Query 011254
Match_columns 490
No_of_seqs 395 out of 3016
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.5E-42 5E-47 357.5 19.7 213 213-443 142-363 (405)
2 4b4t_I 26S protease regulatory 100.0 3.9E-42 1.3E-46 355.4 19.6 215 211-443 174-397 (437)
3 4b4t_M 26S protease regulatory 100.0 9.2E-42 3.1E-46 356.2 18.6 215 211-443 173-396 (434)
4 4b4t_L 26S protease subunit RP 100.0 2.1E-41 7.2E-46 353.7 20.4 213 213-443 175-396 (437)
5 4b4t_K 26S protease regulatory 100.0 7.5E-41 2.6E-45 349.0 20.3 214 212-443 165-388 (428)
6 4b4t_H 26S protease regulatory 100.0 2E-40 6.8E-45 345.6 19.3 214 212-443 202-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2.2E-36 7.5E-41 336.1 8.1 213 214-444 472-693 (806)
8 3cf2_A TER ATPase, transitiona 100.0 6.9E-34 2.4E-38 316.1 18.4 210 214-444 199-417 (806)
9 3cf0_A Transitional endoplasmi 100.0 4.3E-30 1.5E-34 257.5 21.9 214 213-444 9-231 (301)
10 2x8a_A Nuclear valosin-contain 100.0 3.4E-30 1.2E-34 255.1 18.3 209 214-443 5-227 (274)
11 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.6E-28 9E-33 237.8 20.8 211 215-443 2-223 (262)
12 2ce7_A Cell division protein F 100.0 1.6E-28 5.6E-33 259.8 20.7 211 214-443 11-230 (476)
13 3h4m_A Proteasome-activating n 100.0 1.7E-28 5.8E-33 242.8 19.6 215 211-443 9-232 (285)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 4.7E-28 1.6E-32 245.1 20.7 209 213-444 6-225 (322)
15 1lv7_A FTSH; alpha/beta domain 100.0 1.4E-27 4.8E-32 233.1 19.8 212 213-443 6-226 (257)
16 3eie_A Vacuolar protein sortin 100.0 8.3E-28 2.8E-32 243.1 18.2 209 212-443 11-229 (322)
17 2qp9_X Vacuolar protein sortin 99.9 3.6E-27 1.2E-31 241.8 18.1 208 213-443 45-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 9.2E-27 3.1E-31 247.9 19.1 209 214-443 199-416 (489)
19 2r62_A Cell division protease 99.9 1.2E-27 4.1E-32 234.7 8.9 214 213-443 5-227 (268)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 2.7E-26 9.4E-31 244.1 17.0 211 214-443 26-245 (499)
21 1ixz_A ATP-dependent metallopr 99.9 1.8E-25 6E-30 217.8 21.2 212 213-443 10-230 (254)
22 2zan_A Vacuolar protein sortin 99.9 2.3E-26 7.8E-31 242.6 15.9 209 213-444 128-347 (444)
23 3vfd_A Spastin; ATPase, microt 99.9 2.5E-25 8.7E-30 230.6 20.1 211 211-443 107-327 (389)
24 3d8b_A Fidgetin-like protein 1 99.9 2.9E-25 9.8E-30 227.7 18.0 209 213-443 78-296 (357)
25 1iy2_A ATP-dependent metallopr 99.9 2.5E-24 8.5E-29 212.8 20.9 212 213-443 34-254 (278)
26 3b9p_A CG5977-PA, isoform A; A 99.9 8.6E-25 3E-29 217.5 17.7 209 213-443 15-234 (297)
27 3t15_A Ribulose bisphosphate c 99.9 1.2E-25 4.1E-30 224.5 9.5 170 247-438 30-220 (293)
28 1ypw_A Transitional endoplasmi 99.9 1.7E-27 5.8E-32 267.9 -5.5 212 214-443 472-692 (806)
29 1ypw_A Transitional endoplasmi 99.9 7.4E-23 2.5E-27 230.2 16.7 208 214-442 199-415 (806)
30 2c9o_A RUVB-like 1; hexameric 99.8 3.9E-21 1.3E-25 203.3 6.7 182 213-402 31-226 (456)
31 3pfi_A Holliday junction ATP-d 99.8 8.4E-19 2.9E-23 177.4 21.0 196 205-442 17-227 (338)
32 1g41_A Heat shock protein HSLU 99.8 1.9E-20 6.5E-25 195.7 5.0 162 220-409 16-188 (444)
33 3syl_A Protein CBBX; photosynt 99.8 3.6E-19 1.2E-23 177.5 12.6 178 218-424 29-228 (309)
34 1hqc_A RUVB; extended AAA-ATPa 99.8 5.8E-18 2E-22 169.8 20.3 190 213-442 6-211 (324)
35 3u61_B DNA polymerase accessor 99.7 2.1E-17 7.3E-22 166.1 17.2 157 206-413 15-178 (324)
36 1ofh_A ATP-dependent HSL prote 99.7 3E-17 1E-21 163.1 16.8 173 220-412 16-214 (310)
37 2chg_A Replication factor C sm 99.7 1.4E-16 4.9E-21 149.1 19.0 154 212-415 10-176 (226)
38 1d2n_A N-ethylmaleimide-sensit 99.7 1.6E-16 5.3E-21 156.1 18.1 167 219-411 33-210 (272)
39 3uk6_A RUVB-like 2; hexameric 99.7 4.5E-16 1.5E-20 158.9 21.9 185 213-442 38-303 (368)
40 3hws_A ATP-dependent CLP prote 99.7 1.6E-17 5.6E-22 170.1 8.3 176 220-413 16-269 (363)
41 1njg_A DNA polymerase III subu 99.7 7.7E-16 2.6E-20 145.6 19.1 157 212-417 16-202 (250)
42 1sxj_A Activator 1 95 kDa subu 99.7 2.6E-16 9E-21 168.8 17.7 175 205-416 27-225 (516)
43 1jbk_A CLPB protein; beta barr 99.7 8.5E-17 2.9E-21 147.1 9.4 152 214-409 17-194 (195)
44 3pvs_A Replication-associated 99.6 1.3E-15 4.5E-20 160.3 15.8 150 213-415 20-180 (447)
45 2chq_A Replication factor C sm 99.6 9.7E-16 3.3E-20 152.6 14.0 159 212-420 10-181 (319)
46 2r44_A Uncharacterized protein 99.6 4.8E-15 1.6E-19 149.5 19.1 153 216-415 24-200 (331)
47 4fcw_A Chaperone protein CLPB; 99.6 2.4E-15 8.4E-20 149.7 16.0 160 219-414 17-230 (311)
48 3m6a_A ATP-dependent protease 99.6 3.9E-16 1.3E-20 168.4 10.5 160 218-413 80-266 (543)
49 1um8_A ATP-dependent CLP prote 99.6 2.1E-15 7.3E-20 155.0 14.7 174 220-411 22-284 (376)
50 1sxj_D Activator 1 41 kDa subu 99.6 3.2E-15 1.1E-19 151.2 15.3 160 206-417 26-209 (353)
51 1sxj_B Activator 1 37 kDa subu 99.6 4.8E-15 1.6E-19 147.8 16.3 154 212-415 14-181 (323)
52 1jr3_A DNA polymerase III subu 99.6 8.1E-15 2.8E-19 149.4 18.3 156 213-417 10-195 (373)
53 1iqp_A RFCS; clamp loader, ext 99.6 4.2E-15 1.5E-19 148.4 15.8 163 206-420 14-189 (327)
54 3bos_A Putative DNA replicatio 99.6 1.3E-15 4.5E-20 145.0 11.5 162 211-416 20-190 (242)
55 1l8q_A Chromosomal replication 99.6 3.6E-15 1.2E-19 150.0 14.6 170 212-423 4-189 (324)
56 2v1u_A Cell division control p 99.6 6.2E-15 2.1E-19 150.4 16.3 164 213-414 13-215 (387)
57 1in4_A RUVB, holliday junction 99.6 4.7E-14 1.6E-18 142.9 20.5 190 213-442 19-223 (334)
58 3te6_A Regulatory protein SIR3 99.6 1.3E-14 4.6E-19 145.6 15.9 179 251-465 43-289 (318)
59 2p65_A Hypothetical protein PF 99.6 5.9E-16 2E-20 141.3 4.9 145 214-401 17-187 (187)
60 3pxi_A Negative regulator of g 99.6 1.5E-14 5.1E-19 162.0 15.5 155 219-414 491-676 (758)
61 2qby_B CDC6 homolog 3, cell di 99.6 2.6E-14 8.9E-19 146.2 16.0 151 219-414 20-211 (384)
62 1g8p_A Magnesium-chelatase 38 99.6 1.7E-14 5.9E-19 145.8 14.5 154 213-413 18-232 (350)
63 1r6b_X CLPA protein; AAA+, N-t 99.6 3.7E-14 1.3E-18 158.7 18.0 154 220-414 459-667 (758)
64 1qvr_A CLPB protein; coiled co 99.6 4.3E-14 1.5E-18 160.2 18.4 157 214-414 165-346 (854)
65 2qby_A CDC6 homolog 1, cell di 99.6 4.9E-14 1.7E-18 143.5 17.0 163 212-414 13-211 (386)
66 3pxg_A Negative regulator of g 99.6 3E-14 1E-18 151.0 15.6 147 213-415 174-340 (468)
67 2z4s_A Chromosomal replication 99.6 3.1E-14 1E-18 149.7 14.8 186 212-441 98-305 (440)
68 1sxj_E Activator 1 40 kDa subu 99.5 4.1E-14 1.4E-18 143.5 15.0 180 212-440 7-235 (354)
69 1sxj_C Activator 1 40 kDa subu 99.5 5.1E-14 1.7E-18 142.7 15.5 159 206-416 14-185 (340)
70 1r6b_X CLPA protein; AAA+, N-t 99.5 2E-13 6.9E-18 152.8 21.2 158 214-414 181-363 (758)
71 1fnn_A CDC6P, cell division co 99.5 3.4E-13 1.2E-17 137.8 20.7 162 214-414 12-207 (389)
72 3pxi_A Negative regulator of g 99.5 2E-13 6.9E-18 152.8 17.3 147 213-415 174-340 (758)
73 2bjv_A PSP operon transcriptio 99.5 1.6E-13 5.4E-18 133.9 12.7 154 216-413 3-194 (265)
74 1a5t_A Delta prime, HOLB; zinc 99.5 1.5E-12 5.1E-17 131.8 19.1 126 251-413 22-180 (334)
75 1qvr_A CLPB protein; coiled co 99.4 1.8E-12 6.2E-17 146.9 13.8 155 219-414 558-771 (854)
76 3f9v_A Minichromosome maintena 99.4 5.6E-14 1.9E-18 153.0 0.9 129 255-416 329-493 (595)
77 3n70_A Transport activator; si 99.4 2E-12 6.9E-17 114.8 10.2 85 220-317 2-89 (145)
78 2gno_A DNA polymerase III, gam 99.4 4.4E-12 1.5E-16 126.9 13.1 123 253-414 18-153 (305)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 5.3E-12 1.8E-16 134.3 12.2 146 220-414 23-197 (500)
80 3ec2_A DNA replication protein 99.3 1.7E-12 5.7E-17 119.2 6.9 97 214-316 5-112 (180)
81 4akg_A Glutathione S-transfera 99.3 8E-12 2.8E-16 153.7 13.1 137 253-414 1267-1432(2695)
82 1ojl_A Transcriptional regulat 99.3 1.1E-11 3.7E-16 124.0 11.8 152 220-414 3-191 (304)
83 3co5_A Putative two-component 99.3 2.6E-12 8.9E-17 113.9 6.2 84 220-317 5-88 (143)
84 1w5s_A Origin recognition comp 99.2 7.9E-11 2.7E-15 121.3 15.4 167 215-414 18-229 (412)
85 2w58_A DNAI, primosome compone 99.2 5.4E-11 1.8E-15 110.9 9.4 97 214-316 20-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.1 1.9E-11 6.3E-16 125.7 5.3 121 248-399 164-284 (377)
87 2qgz_A Helicase loader, putati 99.0 2.2E-10 7.6E-15 114.6 7.7 96 215-316 120-226 (308)
88 3cmw_A Protein RECA, recombina 99.0 2.9E-10 9.9E-15 134.8 8.8 147 216-378 1017-1218(1706)
89 1tue_A Replication protein E1; 99.0 5.4E-10 1.8E-14 104.6 8.1 62 249-316 54-115 (212)
90 3k1j_A LON protease, ATP-depen 99.0 2.2E-09 7.4E-14 117.1 12.9 52 213-279 35-86 (604)
91 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.2E-09 4.1E-14 109.2 5.5 116 249-385 119-242 (331)
92 2fna_A Conserved hypothetical 98.9 5.4E-08 1.8E-12 97.5 17.2 176 215-441 9-249 (357)
93 2kjq_A DNAA-related protein; s 98.8 6.1E-09 2.1E-13 93.0 7.7 58 252-316 35-95 (149)
94 2qen_A Walker-type ATPase; unk 98.8 6.2E-07 2.1E-11 89.5 23.4 181 214-441 7-245 (350)
95 2r2a_A Uncharacterized protein 98.8 5.9E-09 2E-13 97.7 7.0 120 254-403 6-156 (199)
96 4akg_A Glutathione S-transfera 98.8 1.6E-08 5.5E-13 124.8 11.2 132 253-414 645-794 (2695)
97 1u0j_A DNA replication protein 98.7 4.2E-08 1.4E-12 95.6 10.8 59 251-316 102-160 (267)
98 3vkg_A Dynein heavy chain, cyt 98.7 3.3E-08 1.1E-12 122.9 12.1 135 253-414 1304-1470(3245)
99 3dzd_A Transcriptional regulat 98.5 1.7E-06 5.8E-11 88.5 15.4 152 220-414 130-317 (368)
100 1ny5_A Transcriptional regulat 98.4 4.9E-06 1.7E-10 85.6 15.4 154 218-414 136-326 (387)
101 3f8t_A Predicted ATPase involv 98.4 2.7E-07 9.1E-12 96.4 5.6 139 221-404 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 2.3E-06 7.7E-11 106.7 14.7 131 253-416 604-756 (3245)
103 3cmu_A Protein RECA, recombina 98.3 1.3E-06 4.3E-11 105.2 9.3 113 250-378 1424-1563(2050)
104 1ye8_A Protein THEP1, hypothet 98.2 5.1E-06 1.8E-10 76.1 9.2 26 256-281 3-28 (178)
105 1jr3_D DNA polymerase III, del 98.1 2.5E-05 8.6E-10 78.5 12.7 125 252-416 17-158 (343)
106 2cvh_A DNA repair and recombin 97.9 4.9E-05 1.7E-09 70.7 10.3 40 249-288 16-55 (220)
107 1z6t_A APAF-1, apoptotic prote 97.8 0.00036 1.2E-08 75.1 17.2 51 215-276 120-170 (591)
108 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00014 4.7E-09 67.9 9.7 29 249-277 19-47 (235)
109 1n0w_A DNA repair protein RAD5 97.7 0.00018 6.2E-09 67.8 10.4 40 249-288 20-68 (243)
110 3sfz_A APAF-1, apoptotic pepti 97.7 0.0011 3.7E-08 77.0 19.0 165 214-436 119-322 (1249)
111 3trf_A Shikimate kinase, SK; a 97.7 2.1E-05 7E-10 71.5 3.4 33 253-285 5-37 (185)
112 1qhx_A CPT, protein (chloramph 97.6 2.9E-05 1E-09 69.9 4.1 34 254-287 4-37 (178)
113 3hr8_A Protein RECA; alpha and 97.6 0.00013 4.4E-09 74.1 8.6 70 249-318 57-153 (356)
114 3vaa_A Shikimate kinase, SK; s 97.6 3.1E-05 1E-09 71.6 3.6 33 253-285 25-57 (199)
115 3kb2_A SPBC2 prophage-derived 97.6 5.6E-05 1.9E-09 67.4 4.9 32 255-286 3-34 (173)
116 2z43_A DNA repair and recombin 97.5 0.00011 3.7E-09 73.6 7.1 40 249-288 103-151 (324)
117 2rhm_A Putative kinase; P-loop 97.5 3.9E-05 1.3E-09 69.9 3.3 33 252-284 4-36 (193)
118 2zr9_A Protein RECA, recombina 97.5 0.00015 5.2E-09 73.4 7.8 69 249-317 57-152 (349)
119 1u94_A RECA protein, recombina 97.5 0.0002 6.9E-09 72.7 8.2 70 249-318 59-155 (356)
120 1via_A Shikimate kinase; struc 97.5 4.8E-05 1.6E-09 68.6 3.1 31 255-285 6-36 (175)
121 1v5w_A DMC1, meiotic recombina 97.5 0.0003 1E-08 71.0 9.2 40 249-288 118-166 (343)
122 2iyv_A Shikimate kinase, SK; t 97.5 5.7E-05 2E-09 68.5 3.4 31 255-285 4-34 (184)
123 2ehv_A Hypothetical protein PH 97.4 0.00053 1.8E-08 64.8 10.3 26 249-274 26-51 (251)
124 3iij_A Coilin-interacting nucl 97.4 5.9E-05 2E-09 68.3 3.3 33 253-285 11-43 (180)
125 1kag_A SKI, shikimate kinase I 97.4 9.1E-05 3.1E-09 66.3 4.3 31 254-284 5-35 (173)
126 1zuh_A Shikimate kinase; alpha 97.4 6.4E-05 2.2E-09 67.2 3.3 32 254-285 8-39 (168)
127 3upu_A ATP-dependent DNA helic 97.4 0.00038 1.3E-08 73.0 9.6 63 212-287 17-83 (459)
128 1xp8_A RECA protein, recombina 97.4 0.0004 1.4E-08 70.7 9.5 69 249-317 70-165 (366)
129 1pzn_A RAD51, DNA repair and r 97.4 0.00031 1.1E-08 71.1 8.5 29 249-277 127-155 (349)
130 1y63_A LMAJ004144AAA protein; 97.4 7.4E-05 2.5E-09 68.2 3.5 32 254-285 11-43 (184)
131 2orw_A Thymidine kinase; TMTK, 97.4 7.6E-05 2.6E-09 68.5 3.6 31 254-284 4-37 (184)
132 1nlf_A Regulatory protein REPA 97.4 0.00035 1.2E-08 68.0 8.4 28 250-277 27-54 (279)
133 1e6c_A Shikimate kinase; phosp 97.3 8.5E-05 2.9E-09 66.4 3.1 32 254-285 3-34 (173)
134 2ze6_A Isopentenyl transferase 97.3 0.00011 3.8E-09 70.9 3.9 32 255-286 3-34 (253)
135 3cmu_A Protein RECA, recombina 97.3 0.00044 1.5E-08 83.5 9.5 70 249-318 1077-1173(2050)
136 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 67.3 3.9 32 254-285 21-52 (201)
137 3lw7_A Adenylate kinase relate 97.3 9.9E-05 3.4E-09 65.5 3.0 29 255-284 3-31 (179)
138 1qf9_A UMP/CMP kinase, protein 97.3 0.0001 3.4E-09 66.9 3.1 34 252-285 5-38 (194)
139 1tev_A UMP-CMP kinase; ploop, 97.3 0.00011 3.6E-09 66.9 3.1 31 254-284 4-34 (196)
140 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5E-09 67.0 3.8 33 253-285 18-50 (202)
141 2pt5_A Shikimate kinase, SK; a 97.3 0.00013 4.5E-09 64.9 3.3 30 256-285 3-32 (168)
142 3cm0_A Adenylate kinase; ATP-b 97.2 0.00011 3.6E-09 66.7 2.5 30 255-284 6-35 (186)
143 1ly1_A Polynucleotide kinase; 97.2 9.3E-05 3.2E-09 66.4 2.1 30 253-282 2-32 (181)
144 1gvn_B Zeta; postsegregational 97.2 0.00035 1.2E-08 68.7 6.3 35 252-286 32-66 (287)
145 2c95_A Adenylate kinase 1; tra 97.2 0.00014 4.8E-09 66.3 3.2 32 254-285 10-41 (196)
146 1zp6_A Hypothetical protein AT 97.2 0.00015 5.2E-09 66.0 3.4 36 251-286 7-42 (191)
147 3be4_A Adenylate kinase; malar 97.2 0.00013 4.4E-09 68.4 2.9 31 254-284 6-36 (217)
148 1kht_A Adenylate kinase; phosp 97.2 0.00012 4.2E-09 66.3 2.7 30 254-283 4-38 (192)
149 3e1s_A Exodeoxyribonuclease V, 97.2 0.00058 2E-08 73.7 8.3 33 254-286 205-240 (574)
150 3io5_A Recombination and repai 97.2 0.00078 2.7E-08 67.1 8.5 68 250-318 26-125 (333)
151 2bwj_A Adenylate kinase 5; pho 97.2 0.00015 5E-09 66.3 3.0 33 253-285 12-44 (199)
152 2i1q_A DNA repair and recombin 97.2 0.00052 1.8E-08 68.3 7.1 28 249-276 94-121 (322)
153 3dl0_A Adenylate kinase; phosp 97.2 0.00017 5.7E-09 67.3 3.3 30 256-285 3-32 (216)
154 1zd8_A GTP:AMP phosphotransfer 97.2 0.00017 5.9E-09 67.9 3.1 32 253-284 7-38 (227)
155 3fb4_A Adenylate kinase; psych 97.2 0.00018 6.2E-09 66.9 3.2 30 256-285 3-32 (216)
156 1aky_A Adenylate kinase; ATP:A 97.1 0.00018 6E-09 67.4 3.1 31 254-284 5-35 (220)
157 1knq_A Gluconate kinase; ALFA/ 97.1 0.0002 6.9E-09 64.3 3.4 31 254-284 9-39 (175)
158 3lda_A DNA repair protein RAD5 97.1 0.00092 3.1E-08 68.9 8.4 27 249-275 174-200 (400)
159 2pez_A Bifunctional 3'-phospho 97.1 0.00034 1.2E-08 63.1 4.5 33 254-286 6-41 (179)
160 1ukz_A Uridylate kinase; trans 97.1 0.00021 7.3E-09 65.8 3.1 32 254-285 16-47 (203)
161 2vli_A Antibiotic resistance p 97.1 0.00021 7.1E-09 64.5 2.9 29 254-282 6-34 (183)
162 2p5t_B PEZT; postsegregational 97.1 0.00034 1.2E-08 67.2 4.6 38 252-289 31-68 (253)
163 2zts_A Putative uncharacterize 97.1 0.0016 5.5E-08 61.3 9.2 38 249-286 26-67 (251)
164 2a5y_B CED-4; apoptosis; HET: 97.1 0.019 6.5E-07 61.3 18.5 44 222-275 131-174 (549)
165 4gp7_A Metallophosphoesterase; 97.1 0.00069 2.4E-08 61.0 6.1 19 254-272 10-28 (171)
166 1ak2_A Adenylate kinase isoenz 97.1 0.00025 8.7E-09 67.1 3.3 31 254-284 17-47 (233)
167 4eun_A Thermoresistant glucoki 97.1 0.00036 1.2E-08 64.3 4.2 31 253-283 29-59 (200)
168 1zak_A Adenylate kinase; ATP:A 97.0 0.00018 6.2E-09 67.4 2.0 32 253-284 5-36 (222)
169 2pbr_A DTMP kinase, thymidylat 97.0 0.00042 1.4E-08 62.9 4.4 31 256-286 3-36 (195)
170 3crm_A TRNA delta(2)-isopenten 97.0 0.00038 1.3E-08 69.6 4.0 34 253-286 5-38 (323)
171 1e4v_A Adenylate kinase; trans 97.0 0.00028 9.5E-09 65.8 2.8 29 256-284 3-31 (214)
172 3umf_A Adenylate kinase; rossm 97.0 0.00043 1.5E-08 65.3 4.1 32 251-282 27-58 (217)
173 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00023 7.9E-09 71.9 2.2 30 254-283 25-54 (359)
174 3tlx_A Adenylate kinase 2; str 96.9 0.00038 1.3E-08 66.6 3.3 33 253-285 29-61 (243)
175 2bbw_A Adenylate kinase 4, AK4 96.9 0.00049 1.7E-08 65.6 4.0 31 253-283 27-57 (246)
176 1cke_A CK, MSSA, protein (cyti 96.9 0.00051 1.8E-08 64.2 3.9 31 254-284 6-36 (227)
177 2if2_A Dephospho-COA kinase; a 96.9 0.00036 1.2E-08 64.3 2.7 30 255-285 3-32 (204)
178 2xb4_A Adenylate kinase; ATP-b 96.9 0.00052 1.8E-08 64.6 3.9 29 256-284 3-31 (223)
179 2v54_A DTMP kinase, thymidylat 96.9 0.00064 2.2E-08 62.3 4.4 33 254-286 5-38 (204)
180 3sr0_A Adenylate kinase; phosp 96.9 0.00054 1.8E-08 64.1 3.9 28 256-283 3-30 (206)
181 2plr_A DTMP kinase, probable t 96.9 0.00099 3.4E-08 61.2 5.5 31 254-284 5-37 (213)
182 1nks_A Adenylate kinase; therm 96.9 0.00041 1.4E-08 62.7 2.8 24 255-278 3-26 (194)
183 2jaq_A Deoxyguanosine kinase; 96.9 0.00055 1.9E-08 62.6 3.7 28 256-283 3-30 (205)
184 2z0h_A DTMP kinase, thymidylat 96.9 0.0007 2.4E-08 61.6 4.3 31 256-286 3-36 (197)
185 1jjv_A Dephospho-COA kinase; P 96.9 0.00044 1.5E-08 63.9 2.9 30 255-285 4-33 (206)
186 3nwj_A ATSK2; P loop, shikimat 96.8 0.0005 1.7E-08 66.3 3.3 33 253-285 48-80 (250)
187 3ake_A Cytidylate kinase; CMP 96.8 0.00054 1.8E-08 63.0 3.2 31 255-285 4-34 (208)
188 3r20_A Cytidylate kinase; stru 96.8 0.0008 2.7E-08 64.2 4.1 32 254-285 10-41 (233)
189 2grj_A Dephospho-COA kinase; T 96.8 0.00059 2E-08 63.0 3.1 31 255-285 14-44 (192)
190 3uie_A Adenylyl-sulfate kinase 96.8 0.0011 3.7E-08 61.1 4.7 33 253-285 25-60 (200)
191 1vt4_I APAF-1 related killer D 96.8 0.0073 2.5E-07 68.9 12.2 43 222-276 131-173 (1221)
192 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00075 2.6E-08 65.1 3.8 32 254-285 5-39 (260)
193 4a74_A DNA repair and recombin 96.7 0.0021 7.2E-08 59.8 6.0 29 249-277 21-49 (231)
194 2b8t_A Thymidine kinase; deoxy 96.6 0.0037 1.3E-07 59.1 7.6 61 256-316 15-101 (223)
195 2r8r_A Sensor protein; KDPD, P 96.6 0.0013 4.6E-08 62.2 4.5 32 255-286 8-42 (228)
196 1uf9_A TT1252 protein; P-loop, 96.6 0.00078 2.7E-08 61.6 2.8 31 254-285 9-39 (203)
197 2wwf_A Thymidilate kinase, put 96.6 0.0005 1.7E-08 63.4 1.5 31 254-284 11-41 (212)
198 1g5t_A COB(I)alamin adenosyltr 96.6 0.0056 1.9E-07 56.6 8.4 108 255-398 30-178 (196)
199 2h92_A Cytidylate kinase; ross 96.6 0.0011 3.7E-08 61.7 3.5 32 254-285 4-35 (219)
200 1vht_A Dephospho-COA kinase; s 96.5 0.0011 3.7E-08 61.8 3.1 31 254-285 5-35 (218)
201 3cmw_A Protein RECA, recombina 96.5 0.0029 9.9E-08 75.6 7.3 70 249-318 30-126 (1706)
202 3jvv_A Twitching mobility prot 96.5 0.0024 8.2E-08 64.7 5.6 24 255-278 125-148 (356)
203 4e22_A Cytidylate kinase; P-lo 96.5 0.0018 6.2E-08 62.1 4.5 30 254-283 28-57 (252)
204 2qt1_A Nicotinamide riboside k 96.5 0.0011 3.8E-08 61.2 2.7 32 254-285 22-54 (207)
205 2qor_A Guanylate kinase; phosp 96.5 0.0016 5.3E-08 60.2 3.6 28 251-278 10-37 (204)
206 2bdt_A BH3686; alpha-beta prot 96.4 0.0017 5.7E-08 59.0 3.7 25 255-279 4-28 (189)
207 2c9o_A RUVB-like 1; hexameric 96.4 0.015 5.2E-07 60.6 11.6 73 305-415 296-381 (456)
208 1kao_A RAP2A; GTP-binding prot 96.4 0.013 4.3E-07 50.8 9.3 22 255-276 5-26 (167)
209 3zvl_A Bifunctional polynucleo 96.4 0.0029 1E-07 65.4 6.0 32 253-284 258-289 (416)
210 1ltq_A Polynucleotide kinase; 96.4 0.001 3.5E-08 65.2 2.3 33 253-285 2-35 (301)
211 1q3t_A Cytidylate kinase; nucl 96.4 0.0021 7.1E-08 60.9 4.3 31 255-285 18-48 (236)
212 1nn5_A Similar to deoxythymidy 96.4 0.00083 2.9E-08 62.0 1.5 26 254-279 10-35 (215)
213 1kgd_A CASK, peripheral plasma 96.4 0.0017 6E-08 58.7 3.6 25 254-278 6-30 (180)
214 3a8t_A Adenylate isopentenyltr 96.4 0.0015 5E-08 65.6 3.2 36 254-289 41-76 (339)
215 4b3f_X DNA-binding protein smu 96.4 0.0048 1.6E-07 67.4 7.5 58 215-287 182-242 (646)
216 1uj2_A Uridine-cytidine kinase 96.4 0.0017 5.7E-08 62.2 3.4 29 253-281 22-50 (252)
217 2ius_A DNA translocase FTSK; n 96.3 0.023 8E-07 60.1 12.2 40 369-410 333-374 (512)
218 1z0j_A RAB-22, RAS-related pro 96.3 0.0059 2E-07 53.3 6.6 23 255-277 8-30 (170)
219 2qmh_A HPR kinase/phosphorylas 96.3 0.0015 5.3E-08 60.6 2.7 32 253-285 34-65 (205)
220 1rz3_A Hypothetical protein rb 96.3 0.006 2E-07 56.2 6.8 35 254-288 23-60 (201)
221 2yvu_A Probable adenylyl-sulfa 96.3 0.0032 1.1E-07 57.0 4.8 33 253-285 13-48 (186)
222 2iut_A DNA translocase FTSK; n 96.3 0.028 9.6E-07 60.2 12.7 41 368-410 378-420 (574)
223 3foz_A TRNA delta(2)-isopenten 96.3 0.0023 7.7E-08 63.5 3.9 35 252-286 9-43 (316)
224 2j41_A Guanylate kinase; GMP, 96.3 0.002 7E-08 58.9 3.3 25 253-277 6-30 (207)
225 1qde_A EIF4A, translation init 96.2 0.016 5.3E-07 53.8 9.2 51 216-269 14-67 (224)
226 2dr3_A UPF0273 protein PH0284; 96.2 0.003 1E-07 59.4 4.1 38 249-286 19-59 (247)
227 3fdi_A Uncharacterized protein 96.2 0.0023 7.9E-08 59.4 3.2 30 254-283 7-36 (201)
228 1m7g_A Adenylylsulfate kinase; 96.2 0.0033 1.1E-07 58.3 4.2 33 253-285 25-61 (211)
229 1nrj_B SR-beta, signal recogni 96.2 0.012 4.3E-07 54.0 8.0 24 254-277 13-36 (218)
230 3tau_A Guanylate kinase, GMP k 96.2 0.0026 8.9E-08 59.0 3.4 27 253-279 8-34 (208)
231 2f6r_A COA synthase, bifunctio 96.1 0.0021 7.2E-08 62.8 2.8 31 254-285 76-106 (281)
232 3d3q_A TRNA delta(2)-isopenten 96.1 0.0025 8.7E-08 64.0 3.4 32 254-285 8-39 (340)
233 2ce2_X GTPase HRAS; signaling 96.1 0.016 5.4E-07 50.0 8.1 22 255-276 5-26 (166)
234 1ek0_A Protein (GTP-binding pr 96.1 0.0077 2.6E-07 52.5 6.2 22 255-276 5-26 (170)
235 3dm5_A SRP54, signal recogniti 96.1 0.0058 2E-07 63.6 6.0 60 226-286 74-136 (443)
236 1t6n_A Probable ATP-dependent 96.1 0.018 6.1E-07 53.2 8.9 60 213-275 11-73 (220)
237 1sky_E F1-ATPase, F1-ATP synth 96.1 0.039 1.3E-06 57.7 12.3 23 255-277 153-175 (473)
238 3c8u_A Fructokinase; YP_612366 96.1 0.0041 1.4E-07 57.6 4.4 25 254-278 23-47 (208)
239 2px0_A Flagellar biosynthesis 96.1 0.011 3.7E-07 58.3 7.6 34 253-286 105-142 (296)
240 3tr0_A Guanylate kinase, GMP k 96.1 0.0034 1.2E-07 57.4 3.6 25 254-278 8-32 (205)
241 1u8z_A RAS-related protein RAL 96.0 0.022 7.6E-07 49.2 8.7 23 254-276 5-27 (168)
242 3b6e_A Interferon-induced heli 96.0 0.012 4.2E-07 53.8 7.3 24 254-277 49-72 (216)
243 3a00_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 57.1 3.3 25 254-278 2-26 (186)
244 2efe_B Small GTP-binding prote 96.0 0.014 4.7E-07 51.6 7.2 23 254-276 13-35 (181)
245 3kw6_A 26S protease regulatory 96.0 0.0065 2.2E-07 47.3 4.4 46 398-443 1-47 (78)
246 1tf7_A KAIC; homohexamer, hexa 96.0 0.017 5.8E-07 61.4 9.0 29 249-277 277-305 (525)
247 3asz_A Uridine kinase; cytidin 96.0 0.0029 9.9E-08 58.4 2.7 30 254-283 7-38 (211)
248 3tkl_A RAS-related protein RAB 96.0 0.013 4.3E-07 52.7 6.9 23 254-276 17-39 (196)
249 3exa_A TRNA delta(2)-isopenten 96.0 0.0039 1.3E-07 62.0 3.7 34 254-287 4-37 (322)
250 3thx_B DNA mismatch repair pro 96.0 0.012 4.1E-07 66.7 8.1 23 253-275 673-695 (918)
251 2fz4_A DNA repair protein RAD2 96.0 0.0053 1.8E-07 58.3 4.5 32 255-286 110-141 (237)
252 2a9k_A RAS-related protein RAL 95.9 0.028 9.4E-07 49.8 9.1 23 254-276 19-41 (187)
253 1r2q_A RAS-related protein RAB 95.9 0.011 3.6E-07 51.6 6.2 22 255-276 8-29 (170)
254 2gxq_A Heat resistant RNA depe 95.9 0.016 5.3E-07 52.9 7.5 23 254-276 39-62 (207)
255 1c1y_A RAS-related protein RAP 95.9 0.021 7E-07 49.6 8.0 22 255-276 5-26 (167)
256 2oil_A CATX-8, RAS-related pro 95.9 0.012 4.1E-07 52.9 6.6 23 254-276 26-48 (193)
257 4dsu_A GTPase KRAS, isoform 2B 95.9 0.018 6.1E-07 51.2 7.7 22 255-276 6-27 (189)
258 1w4r_A Thymidine kinase; type 95.9 0.008 2.7E-07 55.5 5.3 32 254-285 21-55 (195)
259 1lvg_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 57.4 3.2 26 253-278 4-29 (198)
260 2bov_A RAla, RAS-related prote 95.9 0.032 1.1E-06 50.5 9.3 23 254-276 15-37 (206)
261 1g41_A Heat shock protein HSLU 95.9 0.024 8.2E-07 59.0 9.3 95 296-410 242-346 (444)
262 3b9q_A Chloroplast SRP recepto 95.9 0.005 1.7E-07 60.9 4.0 52 226-277 71-124 (302)
263 1z0f_A RAB14, member RAS oncog 95.9 0.018 6.3E-07 50.5 7.4 24 254-277 16-39 (179)
264 3q72_A GTP-binding protein RAD 95.8 0.011 3.7E-07 51.5 5.8 21 255-275 4-24 (166)
265 1htw_A HI0065; nucleotide-bind 95.8 0.0055 1.9E-07 54.7 3.8 27 251-277 31-57 (158)
266 3thx_A DNA mismatch repair pro 95.8 0.022 7.5E-07 64.7 9.5 23 253-275 662-684 (934)
267 2v9p_A Replication protein E1; 95.8 0.0051 1.7E-07 61.0 3.8 33 249-281 122-154 (305)
268 1r8s_A ADP-ribosylation factor 95.8 0.06 2.1E-06 46.5 10.5 21 256-276 3-23 (164)
269 3bc1_A RAS-related protein RAB 95.8 0.023 7.7E-07 50.6 7.8 23 254-276 12-34 (195)
270 2xau_A PRE-mRNA-splicing facto 95.8 0.024 8.1E-07 63.3 9.5 60 215-276 71-132 (773)
271 1ex7_A Guanylate kinase; subst 95.8 0.006 2E-07 56.0 3.8 25 254-278 2-26 (186)
272 1z6g_A Guanylate kinase; struc 95.7 0.0052 1.8E-07 57.5 3.4 25 253-277 23-47 (218)
273 3t1o_A Gliding protein MGLA; G 95.7 0.03 1E-06 50.0 8.3 23 255-277 16-38 (198)
274 1wb9_A DNA mismatch repair pro 95.7 0.019 6.6E-07 64.1 8.4 24 253-276 607-630 (800)
275 1vec_A ATP-dependent RNA helic 95.7 0.04 1.4E-06 50.1 9.2 18 254-271 41-58 (206)
276 1znw_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 56.6 3.4 26 253-278 20-45 (207)
277 2atv_A RERG, RAS-like estrogen 95.7 0.034 1.2E-06 50.1 8.6 24 253-276 28-51 (196)
278 2nzj_A GTP-binding protein REM 95.7 0.017 6E-07 50.6 6.4 22 255-276 6-27 (175)
279 2v3c_C SRP54, signal recogniti 95.6 0.011 3.6E-07 61.5 5.7 64 253-316 99-192 (432)
280 1x6v_B Bifunctional 3'-phospho 95.6 0.0074 2.5E-07 65.5 4.6 34 253-286 52-88 (630)
281 1cr0_A DNA primase/helicase; R 95.6 0.0052 1.8E-07 60.0 3.1 37 249-285 31-71 (296)
282 3gmt_A Adenylate kinase; ssgci 95.6 0.0062 2.1E-07 57.8 3.5 29 256-284 11-39 (230)
283 3ice_A Transcription terminati 95.6 0.019 6.4E-07 58.7 7.1 24 254-277 175-198 (422)
284 4eaq_A DTMP kinase, thymidylat 95.6 0.0067 2.3E-07 57.4 3.7 30 255-284 28-59 (229)
285 3kl4_A SRP54, signal recogniti 95.6 0.008 2.7E-07 62.4 4.4 34 253-286 97-133 (433)
286 3dz8_A RAS-related protein RAB 95.6 0.015 5.2E-07 52.3 5.9 23 255-277 25-47 (191)
287 1c9k_A COBU, adenosylcobinamid 95.6 0.011 3.6E-07 54.1 4.7 33 256-289 2-34 (180)
288 3con_A GTPase NRAS; structural 95.6 0.022 7.5E-07 51.0 6.8 22 255-276 23-44 (190)
289 1x3s_A RAS-related protein RAB 95.6 0.027 9.1E-07 50.4 7.4 22 255-276 17-38 (195)
290 1gtv_A TMK, thymidylate kinase 95.6 0.003 1E-07 58.2 1.0 23 256-278 3-25 (214)
291 3ney_A 55 kDa erythrocyte memb 95.6 0.0067 2.3E-07 56.2 3.3 26 253-278 19-44 (197)
292 2erx_A GTP-binding protein DI- 95.6 0.019 6.6E-07 49.9 6.3 22 255-276 5-26 (172)
293 1hv8_A Putative ATP-dependent 95.5 0.031 1.1E-06 55.2 8.5 57 216-275 6-66 (367)
294 2pl3_A Probable ATP-dependent 95.5 0.027 9.1E-07 52.7 7.6 55 213-270 22-79 (236)
295 2og2_A Putative signal recogni 95.5 0.007 2.4E-07 61.3 3.7 52 226-277 128-181 (359)
296 1p9r_A General secretion pathw 95.5 0.014 4.9E-07 60.3 6.0 49 215-278 143-192 (418)
297 3hdt_A Putative kinase; struct 95.5 0.006 2.1E-07 57.6 2.9 30 254-283 15-44 (223)
298 3lxx_A GTPase IMAP family memb 95.5 0.045 1.5E-06 51.4 9.0 24 254-277 30-53 (239)
299 1zbd_A Rabphilin-3A; G protein 95.5 0.027 9.1E-07 51.1 7.1 23 254-276 9-31 (203)
300 1zd9_A ADP-ribosylation factor 95.5 0.035 1.2E-06 49.8 7.8 22 255-276 24-45 (188)
301 2eyu_A Twitching motility prot 95.4 0.0087 3E-07 57.8 3.8 26 253-278 25-50 (261)
302 2yhs_A FTSY, cell division pro 95.4 0.0073 2.5E-07 63.6 3.5 24 254-277 294-317 (503)
303 3eph_A TRNA isopentenyltransfe 95.4 0.0073 2.5E-07 62.0 3.3 32 254-285 3-34 (409)
304 1s96_A Guanylate kinase, GMP k 95.4 0.0084 2.9E-07 56.4 3.4 27 252-278 15-41 (219)
305 2hup_A RAS-related protein RAB 95.4 0.033 1.1E-06 50.7 7.5 22 255-276 31-52 (201)
306 2i3b_A HCR-ntpase, human cance 95.4 0.0077 2.6E-07 55.3 3.1 23 255-277 3-25 (189)
307 3kkq_A RAS-related protein M-R 95.4 0.028 9.5E-07 49.9 6.8 22 255-276 20-41 (183)
308 2krk_A 26S protease regulatory 95.4 0.012 3.9E-07 47.0 3.7 48 396-443 7-55 (86)
309 3q85_A GTP-binding protein REM 95.4 0.029 9.9E-07 48.9 6.7 20 256-275 5-24 (169)
310 1odf_A YGR205W, hypothetical 3 95.3 0.011 3.9E-07 58.0 4.3 27 253-279 31-57 (290)
311 2oxc_A Probable ATP-dependent 95.3 0.04 1.4E-06 51.4 7.9 54 213-269 21-77 (230)
312 3pey_A ATP-dependent RNA helic 95.3 0.1 3.5E-06 52.0 11.4 53 216-271 5-62 (395)
313 2f7s_A C25KG, RAS-related prot 95.3 0.049 1.7E-06 49.9 8.2 22 255-276 27-48 (217)
314 2p5s_A RAS and EF-hand domain 95.2 0.031 1E-06 50.7 6.7 23 254-276 29-51 (199)
315 2h57_A ADP-ribosylation factor 95.2 0.02 7E-07 51.3 5.5 23 255-277 23-45 (190)
316 3clv_A RAB5 protein, putative; 95.2 0.034 1.2E-06 49.7 7.0 23 254-276 8-30 (208)
317 1vma_A Cell division protein F 95.2 0.0087 3E-07 59.3 3.0 59 227-286 79-140 (306)
318 2jeo_A Uridine-cytidine kinase 95.2 0.01 3.5E-07 56.4 3.3 26 255-280 27-52 (245)
319 2fg5_A RAB-22B, RAS-related pr 95.1 0.021 7.1E-07 51.5 5.2 23 254-276 24-46 (192)
320 2gk6_A Regulator of nonsense t 95.1 0.015 5E-07 63.3 4.9 24 254-277 196-219 (624)
321 2ewv_A Twitching motility prot 95.1 0.012 4.1E-07 59.9 3.9 28 251-278 134-161 (372)
322 3e70_C DPA, signal recognition 95.1 0.018 6.2E-07 57.6 5.1 26 252-277 128-153 (328)
323 2y8e_A RAB-protein 6, GH09086P 95.1 0.016 5.4E-07 51.0 4.2 22 255-276 16-37 (179)
324 3tqf_A HPR(Ser) kinase; transf 95.1 0.0088 3E-07 54.2 2.5 28 253-281 16-43 (181)
325 3ber_A Probable ATP-dependent 95.1 0.065 2.2E-06 50.9 8.8 52 216-270 43-97 (249)
326 3bh0_A DNAB-like replicative h 95.1 0.017 5.9E-07 57.2 4.9 38 249-286 64-104 (315)
327 1fzq_A ADP-ribosylation factor 95.1 0.091 3.1E-06 46.8 9.3 23 254-276 17-39 (181)
328 2bme_A RAB4A, RAS-related prot 95.1 0.02 6.8E-07 50.9 4.8 23 254-276 11-33 (186)
329 2axn_A 6-phosphofructo-2-kinas 95.1 0.012 4.2E-07 62.5 4.0 27 253-279 35-61 (520)
330 1a7j_A Phosphoribulokinase; tr 95.0 0.0051 1.8E-07 60.4 0.8 36 255-290 7-45 (290)
331 2g6b_A RAS-related protein RAB 95.0 0.032 1.1E-06 49.2 5.9 22 255-276 12-33 (180)
332 1zu4_A FTSY; GTPase, signal re 95.0 0.017 6E-07 57.4 4.6 36 252-287 104-142 (320)
333 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.022 7.4E-07 50.2 4.7 22 255-276 9-30 (177)
334 2va8_A SSO2462, SKI2-type heli 95.0 0.13 4.4E-06 56.5 12.0 55 216-271 8-64 (715)
335 3lnc_A Guanylate kinase, GMP k 95.0 0.0069 2.4E-07 56.9 1.5 25 254-278 28-53 (231)
336 3kta_A Chromosome segregation 95.0 0.011 3.9E-07 52.9 2.9 24 255-278 28-51 (182)
337 1z06_A RAS-related protein RAB 95.0 0.048 1.6E-06 48.8 7.1 22 255-276 22-43 (189)
338 2hxs_A RAB-26, RAS-related pro 94.9 0.03 1E-06 49.3 5.6 22 255-276 8-29 (178)
339 3fe2_A Probable ATP-dependent 94.9 0.063 2.1E-06 50.5 8.0 53 215-270 28-83 (242)
340 1rj9_A FTSY, signal recognitio 94.9 0.015 5.2E-07 57.5 3.7 25 253-277 102-126 (304)
341 2il1_A RAB12; G-protein, GDP, 94.9 0.034 1.1E-06 50.2 5.8 22 255-276 28-49 (192)
342 1np6_A Molybdopterin-guanine d 94.9 0.015 5.1E-07 52.7 3.4 26 252-277 5-30 (174)
343 1ewq_A DNA mismatch repair pro 94.9 0.036 1.2E-06 61.6 7.1 24 253-276 576-599 (765)
344 2o8b_B DNA mismatch repair pro 94.8 0.039 1.3E-06 63.3 7.5 22 253-274 789-810 (1022)
345 3tqc_A Pantothenate kinase; bi 94.8 0.022 7.5E-07 56.8 4.8 24 255-278 94-117 (321)
346 2gf0_A GTP-binding protein DI- 94.8 0.04 1.4E-06 49.4 6.1 23 254-276 9-31 (199)
347 4dkx_A RAS-related protein RAB 94.7 0.039 1.3E-06 51.5 6.1 22 255-276 15-36 (216)
348 2a5j_A RAS-related protein RAB 94.7 0.027 9.3E-07 50.6 4.8 22 255-276 23-44 (191)
349 4f4c_A Multidrug resistance pr 94.7 0.078 2.7E-06 62.6 9.9 28 251-278 442-469 (1321)
350 2fu5_C RAS-related protein RAB 94.7 0.016 5.6E-07 51.4 3.2 23 254-276 9-31 (183)
351 2fn4_A P23, RAS-related protei 94.7 0.025 8.5E-07 49.8 4.4 23 254-276 10-32 (181)
352 3iuy_A Probable ATP-dependent 94.7 0.071 2.4E-06 49.4 7.7 53 215-270 18-74 (228)
353 1m8p_A Sulfate adenylyltransfe 94.7 0.018 6.3E-07 61.9 4.0 33 254-286 397-433 (573)
354 2gf9_A RAS-related protein RAB 94.7 0.022 7.6E-07 51.0 4.0 22 255-276 24-45 (189)
355 2bcg_Y Protein YP2, GTP-bindin 94.7 0.023 7.7E-07 51.8 4.1 23 254-276 9-31 (206)
356 3oes_A GTPase rhebl1; small GT 94.6 0.029 9.8E-07 51.0 4.8 23 254-276 25-47 (201)
357 2b6h_A ADP-ribosylation factor 94.6 0.07 2.4E-06 48.1 7.4 22 254-275 30-51 (192)
358 1sq5_A Pantothenate kinase; P- 94.6 0.014 4.6E-07 57.7 2.7 24 255-278 82-105 (308)
359 1zj6_A ADP-ribosylation factor 94.6 0.092 3.1E-06 46.8 8.1 23 253-275 16-38 (187)
360 2ew1_A RAS-related protein RAB 94.6 0.028 9.4E-07 51.6 4.6 23 254-276 27-49 (201)
361 3fmo_B ATP-dependent RNA helic 94.6 0.3 1E-05 47.7 12.4 53 214-269 90-147 (300)
362 2zj8_A DNA helicase, putative 94.6 0.14 4.9E-06 56.3 11.2 18 253-270 39-56 (720)
363 3aez_A Pantothenate kinase; tr 94.6 0.019 6.4E-07 57.0 3.5 24 255-278 92-115 (312)
364 2r6a_A DNAB helicase, replicat 94.6 0.028 9.6E-07 58.6 5.1 38 249-286 199-240 (454)
365 2wjy_A Regulator of nonsense t 94.6 0.025 8.5E-07 63.3 4.9 23 255-277 373-395 (800)
366 2oap_1 GSPE-2, type II secreti 94.6 0.015 5.2E-07 61.6 3.0 62 253-314 260-343 (511)
367 1p5z_B DCK, deoxycytidine kina 94.6 0.0092 3.1E-07 57.3 1.2 28 255-282 26-54 (263)
368 4i1u_A Dephospho-COA kinase; s 94.6 0.018 6E-07 53.9 3.1 31 255-286 11-41 (210)
369 4edh_A DTMP kinase, thymidylat 94.5 0.02 6.7E-07 53.6 3.4 31 255-285 8-41 (213)
370 2onk_A Molybdate/tungstate ABC 94.5 0.015 5.1E-07 55.5 2.6 25 254-278 25-49 (240)
371 2cbz_A Multidrug resistance-as 94.5 0.013 4.5E-07 55.7 2.1 25 253-277 31-55 (237)
372 3tif_A Uncharacterized ABC tra 94.5 0.013 4.6E-07 55.5 2.2 26 254-279 32-57 (235)
373 1lw7_A Transcriptional regulat 94.4 0.018 6.2E-07 58.1 3.1 28 253-280 170-197 (365)
374 2pcj_A ABC transporter, lipopr 94.4 0.012 4.2E-07 55.4 1.7 24 255-278 32-55 (224)
375 3b85_A Phosphate starvation-in 94.4 0.015 5.1E-07 54.2 2.3 23 254-276 23-45 (208)
376 2fh5_B SR-beta, signal recogni 94.4 0.046 1.6E-06 50.0 5.6 23 254-276 8-30 (214)
377 1bif_A 6-phosphofructo-2-kinas 94.4 0.012 4E-07 61.8 1.7 28 253-280 39-66 (469)
378 2ocp_A DGK, deoxyguanosine kin 94.4 0.021 7.4E-07 53.8 3.4 25 254-278 3-27 (241)
379 2ged_A SR-beta, signal recogni 94.4 0.016 5.6E-07 52.0 2.4 26 252-277 47-72 (193)
380 2q6t_A DNAB replication FORK h 94.4 0.03 1E-06 58.1 4.7 38 249-286 196-237 (444)
381 3cbq_A GTP-binding protein REM 94.3 0.053 1.8E-06 49.2 5.8 21 255-275 25-45 (195)
382 3cph_A RAS-related protein SEC 94.3 0.047 1.6E-06 49.6 5.5 23 254-276 21-43 (213)
383 3v9p_A DTMP kinase, thymidylat 94.3 0.026 8.9E-07 53.4 3.8 30 256-285 28-64 (227)
384 2z0m_A 337AA long hypothetical 94.3 0.18 6.1E-06 49.1 10.0 29 254-282 32-60 (337)
385 2f9l_A RAB11B, member RAS onco 94.3 0.021 7.2E-07 51.9 3.0 22 255-276 7-28 (199)
386 1sgw_A Putative ABC transporte 94.3 0.017 5.8E-07 54.1 2.3 25 254-278 36-60 (214)
387 2j1l_A RHO-related GTP-binding 94.3 0.049 1.7E-06 50.1 5.5 21 255-275 36-56 (214)
388 2j37_W Signal recognition part 94.2 0.028 9.7E-07 59.4 4.1 34 253-286 101-137 (504)
389 1b0u_A Histidine permease; ABC 94.2 0.017 5.8E-07 55.8 2.2 26 254-279 33-58 (262)
390 1oix_A RAS-related protein RAB 94.2 0.021 7E-07 51.8 2.6 23 255-277 31-53 (191)
391 1xjc_A MOBB protein homolog; s 94.1 0.025 8.5E-07 51.0 3.0 32 254-285 5-39 (169)
392 1g6h_A High-affinity branched- 94.1 0.017 5.8E-07 55.6 2.0 24 255-278 35-58 (257)
393 2dyk_A GTP-binding protein; GT 94.1 0.026 8.8E-07 48.7 3.0 22 255-276 3-24 (161)
394 2pze_A Cystic fibrosis transme 94.1 0.016 5.6E-07 54.7 1.8 25 254-278 35-59 (229)
395 1mv5_A LMRA, multidrug resista 94.1 0.017 5.9E-07 55.0 2.0 24 254-277 29-52 (243)
396 1w36_D RECD, exodeoxyribonucle 94.0 0.034 1.2E-06 60.2 4.5 24 254-277 165-188 (608)
397 3ly5_A ATP-dependent RNA helic 94.0 0.29 1E-05 46.6 10.7 18 254-271 92-109 (262)
398 3fht_A ATP-dependent RNA helic 94.0 0.19 6.6E-06 50.4 9.8 54 214-270 23-81 (412)
399 3fvq_A Fe(3+) IONS import ATP- 94.0 0.019 6.4E-07 58.2 2.1 23 255-277 32-54 (359)
400 3gfo_A Cobalt import ATP-bindi 94.0 0.019 6.3E-07 56.0 2.0 24 255-278 36-59 (275)
401 3k53_A Ferrous iron transport 94.0 0.048 1.6E-06 52.5 5.0 23 254-276 4-26 (271)
402 2ghi_A Transport protein; mult 94.0 0.019 6.7E-07 55.3 2.2 26 253-278 46-71 (260)
403 2olj_A Amino acid ABC transpor 94.0 0.02 6.8E-07 55.4 2.2 25 254-278 51-75 (263)
404 2xxa_A Signal recognition part 94.0 0.033 1.1E-06 57.8 4.0 37 252-288 99-139 (433)
405 2qi9_C Vitamin B12 import ATP- 93.9 0.019 6.6E-07 55.0 2.0 25 255-279 28-52 (249)
406 1ji0_A ABC transporter; ATP bi 93.9 0.019 6.5E-07 54.6 2.0 24 255-278 34-57 (240)
407 2ixe_A Antigen peptide transpo 93.9 0.02 6.9E-07 55.6 2.2 25 254-278 46-70 (271)
408 3sop_A Neuronal-specific septi 93.9 0.023 7.8E-07 55.1 2.6 24 255-278 4-27 (270)
409 2d2e_A SUFC protein; ABC-ATPas 93.9 0.024 8.2E-07 54.3 2.6 23 254-276 30-52 (250)
410 2j0s_A ATP-dependent RNA helic 93.9 0.18 6E-06 50.9 9.3 55 215-272 36-93 (410)
411 2xzl_A ATP-dependent helicase 93.9 0.035 1.2E-06 62.1 4.3 33 255-287 377-413 (802)
412 1z2a_A RAS-related protein RAB 93.9 0.027 9.4E-07 48.8 2.8 23 254-276 6-28 (168)
413 2zu0_C Probable ATP-dependent 93.9 0.026 9E-07 54.6 2.8 24 254-277 47-70 (267)
414 2ff7_A Alpha-hemolysin translo 93.8 0.019 6.5E-07 54.9 1.8 25 254-278 36-60 (247)
415 3rlf_A Maltose/maltodextrin im 93.8 0.026 8.9E-07 57.6 2.9 23 255-277 31-53 (381)
416 1z47_A CYSA, putative ABC-tran 93.8 0.026 8.9E-07 57.0 2.8 23 255-277 43-65 (355)
417 3tmk_A Thymidylate kinase; pho 93.8 0.039 1.3E-06 51.7 3.8 30 255-284 7-36 (216)
418 2wji_A Ferrous iron transport 93.8 0.025 8.6E-07 49.7 2.4 22 255-276 5-26 (165)
419 2ihy_A ABC transporter, ATP-bi 93.8 0.021 7.2E-07 55.7 2.0 24 255-278 49-72 (279)
420 3l0o_A Transcription terminati 93.8 0.092 3.1E-06 53.6 6.7 27 251-277 171-199 (427)
421 2h17_A ADP-ribosylation factor 93.8 0.082 2.8E-06 46.9 5.8 22 255-276 23-44 (181)
422 3eiq_A Eukaryotic initiation f 93.8 0.13 4.4E-06 51.8 7.9 52 216-270 40-94 (414)
423 3b1v_A Ferrous iron uptake tra 93.7 0.092 3.2E-06 50.8 6.5 22 255-276 5-26 (272)
424 1vpl_A ABC transporter, ATP-bi 93.7 0.026 8.9E-07 54.3 2.5 25 254-278 42-66 (256)
425 4g1u_C Hemin import ATP-bindin 93.7 0.021 7.4E-07 55.2 1.9 25 254-278 38-62 (266)
426 2it1_A 362AA long hypothetical 93.7 0.03 1E-06 56.7 3.0 23 255-277 31-53 (362)
427 2www_A Methylmalonic aciduria 93.7 0.049 1.7E-06 54.8 4.6 23 255-277 76-98 (349)
428 2dpy_A FLII, flagellum-specifi 93.7 0.057 1.9E-06 56.1 5.2 32 251-282 153-186 (438)
429 1g8f_A Sulfate adenylyltransfe 93.7 0.023 7.9E-07 60.2 2.3 26 254-279 396-421 (511)
430 4a1f_A DNAB helicase, replicat 93.7 0.05 1.7E-06 54.5 4.6 38 249-286 42-82 (338)
431 3fmp_B ATP-dependent RNA helic 93.7 0.51 1.8E-05 48.8 12.6 58 215-275 91-154 (479)
432 2gza_A Type IV secretion syste 93.7 0.029 9.9E-07 56.7 2.9 26 253-278 175-200 (361)
433 2zej_A Dardarin, leucine-rich 93.7 0.024 8.1E-07 50.8 2.0 22 255-276 4-25 (184)
434 2nq2_C Hypothetical ABC transp 93.7 0.023 7.9E-07 54.6 2.0 25 254-278 32-56 (253)
435 3q3j_B RHO-related GTP-binding 93.7 0.049 1.7E-06 50.2 4.2 22 255-276 29-50 (214)
436 2yyz_A Sugar ABC transporter, 93.6 0.031 1E-06 56.6 3.0 23 255-277 31-53 (359)
437 1g29_1 MALK, maltose transport 93.6 0.029 9.9E-07 57.1 2.8 23 255-277 31-53 (372)
438 1f2t_A RAD50 ABC-ATPase; DNA d 93.6 0.034 1.2E-06 48.8 2.9 22 256-277 26-47 (149)
439 2yz2_A Putative ABC transporte 93.6 0.025 8.4E-07 54.7 2.2 25 254-278 34-58 (266)
440 4f4c_A Multidrug resistance pr 93.6 0.059 2E-06 63.6 5.8 25 253-277 1105-1129(1321)
441 1v43_A Sugar-binding transport 93.6 0.029 9.9E-07 57.1 2.7 23 255-277 39-61 (372)
442 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.025 8.7E-07 56.5 2.3 62 253-314 171-250 (330)
443 3t34_A Dynamin-related protein 93.6 0.31 1E-05 48.9 10.3 22 255-276 36-57 (360)
444 1z08_A RAS-related protein RAB 93.6 0.036 1.2E-06 48.2 3.0 23 254-276 7-29 (170)
445 2qe7_A ATP synthase subunit al 93.6 0.13 4.3E-06 54.1 7.5 34 251-284 158-194 (502)
446 3bgw_A DNAB-like replicative h 93.6 0.048 1.6E-06 56.8 4.3 39 249-287 193-234 (444)
447 2f1r_A Molybdopterin-guanine d 93.5 0.019 6.4E-07 51.8 1.1 25 255-279 4-28 (171)
448 3cr8_A Sulfate adenylyltranfer 93.5 0.023 7.8E-07 60.9 1.9 25 254-278 370-394 (552)
449 1q57_A DNA primase/helicase; d 93.5 0.041 1.4E-06 58.1 3.8 39 249-287 238-280 (503)
450 1ky3_A GTP-binding protein YPT 93.5 0.037 1.3E-06 48.6 3.0 23 254-276 9-31 (182)
451 1j8m_F SRP54, signal recogniti 93.5 0.04 1.4E-06 54.2 3.5 35 253-287 98-135 (297)
452 3lv8_A DTMP kinase, thymidylat 93.5 0.03 1E-06 53.2 2.5 25 254-278 28-52 (236)
453 2ffh_A Protein (FFH); SRP54, s 93.5 0.072 2.5E-06 55.1 5.5 34 253-286 98-134 (425)
454 3p32_A Probable GTPase RV1496/ 93.5 0.054 1.8E-06 54.5 4.4 32 254-285 80-114 (355)
455 1g16_A RAS-related protein SEC 93.5 0.034 1.1E-06 48.3 2.6 22 255-276 5-26 (170)
456 2pjz_A Hypothetical protein ST 93.5 0.027 9.1E-07 54.5 2.0 24 254-277 31-54 (263)
457 2qm8_A GTPase/ATPase; G protei 93.4 0.069 2.3E-06 53.4 5.1 23 255-277 57-79 (337)
458 3iby_A Ferrous iron transport 93.4 0.077 2.6E-06 50.8 5.3 22 255-276 3-24 (256)
459 3d31_A Sulfate/molybdate ABC t 93.4 0.028 9.5E-07 56.7 2.2 23 255-277 28-50 (348)
460 2wjg_A FEOB, ferrous iron tran 93.4 0.036 1.2E-06 49.4 2.6 22 255-276 9-30 (188)
461 1qhl_A Protein (cell division 93.3 0.017 5.6E-07 54.7 0.4 23 256-278 30-52 (227)
462 4djt_A GTP-binding nuclear pro 93.3 0.02 6.8E-07 52.6 0.8 22 254-275 12-33 (218)
463 1tf7_A KAIC; homohexamer, hexa 93.2 0.033 1.1E-06 59.2 2.5 37 250-286 36-76 (525)
464 1fuu_A Yeast initiation factor 93.2 0.18 6.2E-06 50.2 8.0 54 214-270 19-75 (394)
465 2obl_A ESCN; ATPase, hydrolase 93.2 0.058 2E-06 54.3 4.1 27 256-282 74-100 (347)
466 3llu_A RAS-related GTP-binding 93.2 0.15 5E-06 46.0 6.5 23 254-276 21-43 (196)
467 1fx0_A ATP synthase alpha chai 93.2 0.12 4.2E-06 54.2 6.7 33 251-283 159-194 (507)
468 1upt_A ARL1, ADP-ribosylation 93.1 0.046 1.6E-06 47.6 2.9 23 254-276 8-30 (171)
469 1oxx_K GLCV, glucose, ABC tran 93.0 0.027 9.2E-07 56.9 1.4 23 255-277 33-55 (353)
470 2lkc_A Translation initiation 93.0 0.045 1.5E-06 48.1 2.7 24 253-276 8-31 (178)
471 2bbs_A Cystic fibrosis transme 93.0 0.031 1.1E-06 54.8 1.8 24 254-277 65-88 (290)
472 4tmk_A Protein (thymidylate ki 93.0 0.041 1.4E-06 51.4 2.5 23 255-277 5-27 (213)
473 3ld9_A DTMP kinase, thymidylat 93.0 0.044 1.5E-06 51.6 2.7 29 255-283 23-55 (223)
474 3mfy_A V-type ATP synthase alp 92.9 0.31 1.1E-05 51.7 9.3 66 251-317 223-302 (588)
475 2r9v_A ATP synthase subunit al 92.9 0.12 4E-06 54.5 6.0 34 251-284 171-207 (515)
476 3gd7_A Fusion complex of cysti 92.9 0.038 1.3E-06 56.6 2.3 24 254-277 48-71 (390)
477 1yrb_A ATP(GTP)binding protein 92.9 0.08 2.7E-06 50.1 4.4 31 255-285 16-48 (262)
478 2gj8_A MNME, tRNA modification 92.8 0.042 1.4E-06 48.7 2.3 22 255-276 6-27 (172)
479 2npi_A Protein CLP1; CLP1-PCF1 92.8 0.051 1.7E-06 56.8 3.1 27 251-277 136-162 (460)
480 1m7b_A RND3/RHOE small GTP-bin 92.7 0.049 1.7E-06 48.6 2.6 23 254-276 8-30 (184)
481 3tw8_B RAS-related protein RAB 92.7 0.053 1.8E-06 47.6 2.7 23 254-276 10-32 (181)
482 3nh6_A ATP-binding cassette SU 92.6 0.032 1.1E-06 55.1 1.3 28 251-278 78-105 (306)
483 1svi_A GTP-binding protein YSX 92.6 0.043 1.5E-06 49.1 2.0 23 254-276 24-46 (195)
484 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.06 2E-06 47.5 2.9 22 255-276 7-28 (186)
485 2wsm_A Hydrogenase expression/ 92.6 0.053 1.8E-06 49.9 2.7 25 254-278 31-55 (221)
486 4hlc_A DTMP kinase, thymidylat 92.6 0.091 3.1E-06 48.6 4.3 30 256-285 5-36 (205)
487 1ko7_A HPR kinase/phosphatase; 92.6 0.067 2.3E-06 53.0 3.5 28 253-281 144-171 (314)
488 3qks_A DNA double-strand break 92.5 0.054 1.9E-06 50.0 2.6 25 255-279 25-49 (203)
489 3tui_C Methionine import ATP-b 92.5 0.054 1.9E-06 54.9 2.7 25 254-278 55-79 (366)
490 2cxx_A Probable GTP-binding pr 92.4 0.045 1.5E-06 48.6 1.9 21 256-276 4-24 (190)
491 3bwd_D RAC-like GTP-binding pr 92.4 0.066 2.2E-06 47.2 2.9 23 254-276 9-31 (182)
492 1knx_A Probable HPR(Ser) kinas 92.4 0.05 1.7E-06 53.9 2.3 30 252-282 146-175 (312)
493 1m2o_B GTP-binding protein SAR 92.4 0.058 2E-06 48.6 2.6 21 255-275 25-45 (190)
494 3c5c_A RAS-like protein 12; GD 92.3 0.068 2.3E-06 47.9 3.0 22 255-276 23-44 (187)
495 1pui_A ENGB, probable GTP-bind 92.3 0.027 9.2E-07 51.3 0.2 23 255-277 28-50 (210)
496 3oaa_A ATP synthase subunit al 92.3 0.2 6.7E-06 52.6 6.7 33 251-283 158-193 (513)
497 2rcn_A Probable GTPase ENGC; Y 92.3 0.052 1.8E-06 54.9 2.3 25 254-278 216-240 (358)
498 3ihw_A Centg3; RAS, centaurin, 92.3 0.07 2.4E-06 47.8 3.0 22 255-276 22-43 (184)
499 1vg8_A RAS-related protein RAB 92.3 0.07 2.4E-06 48.2 3.0 24 254-277 9-32 (207)
500 2db3_A ATP-dependent RNA helic 92.2 0.37 1.3E-05 49.5 8.8 51 216-269 56-109 (434)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-42 Score=357.49 Aligned_cols=213 Identities=27% Similarity=0.340 Sum_probs=182.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|.++|+|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 355899999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
++..++.+|..+. .||||||||||+++..+...... .......++++||+.|||+.+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~----------------~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG----------------GDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG----------------GGGHHHHHHHHHHHHHHTTTCC
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCC----------------CcHHHHHHHHHHHHhhhccCCC
Confidence 4567999998875 79999999999997633221110 0234467899999999999776
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
.+++||+|||+|+.|||||+||||||++|+|++|+.++|.+||+.++......-..++..++..+ +||+|||.+++.
T Consensus 286 --~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 286 --KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp --CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred --CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999998765433334567777655 599999998864
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-42 Score=355.35 Aligned_cols=215 Identities=23% Similarity=0.304 Sum_probs=182.9
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR 290 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 290 (490)
.-.+..+|++|+|.+++|++|.+.+..|+.+|++|.++|.+||+|||||||||||||+||+|+|++++.+++.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ------ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 291 ------GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 291 ------~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
++..++.+|..+. .||||||||||+++..+...... .......++++||+.|||+.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~----------------~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG----------------GEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS----------------SCCHHHHHHHHHHHHHHHCC
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC----------------ccHHHHHHHHHHHHHhhCcC
Confidence 3567888888775 79999999999997633211100 13345678999999999987
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
+. ++++||+|||+++.|||||+||||||++|+|++|+.++|++||+.++......-..+++.++..+ +||+|||.++
T Consensus 318 ~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l 395 (437)
T 4b4t_I 318 DR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAM 395 (437)
T ss_dssp CS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHH
T ss_pred CC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 65 45999999999999999999999999999999999999999999999765433233566666654 5999999988
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+.
T Consensus 396 ~~ 397 (437)
T 4b4t_I 396 CT 397 (437)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-42 Score=356.19 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=181.6
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR 290 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 290 (490)
.-.++.+|++|+|.+++|++|.+.+..|+.+|+.|.++|+++|+|||||||||||||++|+|+|++++.+++.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ------ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 291 ------GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 291 ------~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
+...++.+|..+. .||||||||||+++..+....... ......++++||+.|||+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~----------------~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG----------------DREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT----------------THHHHHHHHHHHHHHTTSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC----------------chHHHHHHHHHHHHhhccC
Confidence 3567888888764 799999999999986332211110 2234678999999999997
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
+. ++++||+|||+|+.|||||+||||||.+|+|++|+.++|.+||+.++......-.-++..++..+ +||+|||.++
T Consensus 317 ~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 317 SD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp SS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHH
T ss_pred CC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHH
Confidence 76 45999999999999999999999999999999999999999999988654322222456666554 5999999988
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+.
T Consensus 395 ~~ 396 (434)
T 4b4t_M 395 TV 396 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-41 Score=353.75 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=181.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
+...++.+|..+. .||||||||||+++..+...+.. .......++++||+.|||+.+.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~----------------~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS----------------ADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS----------------STTHHHHHHHHHHHHHHSSSCT
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC----------------cchHHHHHHHHHHHHhhcccCC
Confidence 3557888888764 79999999999997632211100 1234567899999999999876
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
++++||+|||+|+.|||||+||||||.+|+|++|+.++|.+||+.++......-..++..++..+ +||+|||.+++.
T Consensus 319 --~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 319 --GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp --TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred --CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999998754333333566676654 599999998874
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-41 Score=349.04 Aligned_cols=214 Identities=25% Similarity=0.354 Sum_probs=181.7
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
-.+..+|++|+|.+++|+.|.+.+..|+.+|++|.++|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.+|..+. .||||||||+|+++..+... .. ........++++||+.|||+.+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~--~~--------------~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA--QT--------------GSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSS--CS--------------CCCCHHHHHHHHHHHHHHHSCS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCC--CC--------------CCChHHHHHHHHHHHHhhCCCC
Confidence 3567899998775 79999999999997632211 10 0133456789999999999988
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeC-CCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMS-YCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~-~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
.++ ++||+|||+|+.|||||+||||||++|+|| +|+.++|..|++.++......-..++..++..+ +||+|||.++
T Consensus 309 ~~~--v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 309 STN--VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp SCS--EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHH
T ss_pred CCC--EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHH
Confidence 654 999999999999999999999999999996 899999999999998654322223466666654 5999999988
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+.
T Consensus 387 ~~ 388 (428)
T 4b4t_K 387 MQ 388 (428)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=345.60 Aligned_cols=214 Identities=22% Similarity=0.256 Sum_probs=181.6
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
-.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||+||+|+|++++.+|+.++++++.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
++..++.+|..+. .||||||||+|.++..+...... .......++++||+.|||+.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~----------------~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG----------------GDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG----------------GGGHHHHHHHHHHHHHHSSCC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCC----------------ccHHHHHHHHHHHHHhhccCC
Confidence 3567889998774 79999999999997633211110 023346788999999999876
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
. +.++||+|||+++.|||||+||||||++|+|++|+.++|.+||+.++.........+++.++..+ +||+|||.+++
T Consensus 346 ~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 346 R--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp T--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred C--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 5 45999999999999999999999999999999999999999999998765433333456666554 59999999886
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
.
T Consensus 424 ~ 424 (467)
T 4b4t_H 424 T 424 (467)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-36 Score=336.10 Aligned_cols=213 Identities=22% Similarity=0.325 Sum_probs=161.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|++++|.+++|+.|.+.+..++.+++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.++..++++|..+. .||||||||||+++..+....... ......++++||..|||+.+.
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~----------------~~~~~rv~~~lL~~mdg~~~~- 614 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG----------------GGAADRVINQILTEMDGMSTK- 614 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------------------CHHHHHHHHHHHSSCSS-
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCC----------------chHHHHHHHHHHHHHhCCCCC-
Confidence 46788999999885 699999999999987443221111 334567899999999999775
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHHc
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLMR 444 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 444 (490)
++++||+|||+|+.||||++||||||++|++++|+.++|.+||+.++.........++..|++.+ +||+|||.+++..
T Consensus 615 -~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 615 -KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp -SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHH
T ss_pred -CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999998765433344566777654 4999999998653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.9e-34 Score=316.09 Aligned_cols=210 Identities=21% Similarity=0.329 Sum_probs=181.3
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|++|+|.+++|++|.+.+..++.+|+.|.++|..+|+|+|||||||||||+||+|+|++++.+++.++++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.++..++.+|..+. .||||||||||.++..++.. .....+..+++||..|||+.+..
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-------------------~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-------------------HGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-------------------CCTTHHHHHHHHHTHHHHCCGGG
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC-------------------CChHHHHHHHHHHHHHhcccccC
Confidence 23567999999875 69999999999998633211 13345778999999999998764
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHHc
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLMR 444 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~~ 444 (490)
.++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++..+ +|++||+..++.+
T Consensus 340 --~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~e 417 (806)
T 3cf2_A 340 --HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417 (806)
T ss_dssp --CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred --CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999998765433344567777654 5999999887643
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=4.3e-30 Score=257.49 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=175.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
.++.+|++|+|.+++++.|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.....++.+|..+. .|+||||||||.+...+...... ........++.||..||++...
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~----------------~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD----------------GGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC----------------SSCSCCHHHHHHHHHHHSSCTT
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC----------------cchHHHHHHHHHHHHhhcccCC
Confidence 24456788887764 68999999999987532211000 0223356788999999998654
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
.+++||+|||+++.||++++|||||+..|+++.|+.++|..|++.++.........++..++.. .+++++|+.+++-
T Consensus 153 --~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 153 --KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp --SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred --CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999976533222234444443 3599999988764
Q ss_pred c
Q 011254 444 R 444 (490)
Q Consensus 444 ~ 444 (490)
+
T Consensus 231 ~ 231 (301)
T 3cf0_A 231 R 231 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=255.12 Aligned_cols=209 Identities=21% Similarity=0.335 Sum_probs=164.9
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC--
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG-- 291 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 291 (490)
+..+|++|+|.+++|+.|.+.+..++.+++.|..+|...++|+||+||||||||+|+++||++++.+++.++..++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999877632
Q ss_pred ----hHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 292 ----NMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 292 ----~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
...++.+|..+ ..|+|+|+||+|.++..+.. .. .......++.++..|||....
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~--~~-----------------~~~~~~~~~~~l~~Lsgg~~~- 144 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--RE-----------------TGASVRVVNQLLTEMDGLEAR- 144 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------------------CTTHHHHHHHHHHTCCST-
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC--Cc-----------------chHHHHHHHHHHHhhhccccc-
Confidence 34577778775 36899999999987642211 00 111245678999999998654
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC-CCCc--hHHHHHhhhc---cCCCHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT-EHPL--FLEVEGLIEK---AKVTPADVA 439 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~-~~~l--~~~i~~l~~~---~~~tpa~i~ 439 (490)
..++++++||+|+.||||++||||||.+|++++|+.++|.+|++.++... ..++ ..++..++.. .+||+|||.
T Consensus 145 -~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~ 223 (274)
T 2x8a_A 145 -QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLS 223 (274)
T ss_dssp -TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHH
T ss_pred -CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHH
Confidence 44899999999999999999999999999999999999999999988542 1222 2345666654 379999999
Q ss_pred HHHH
Q 011254 440 EQLM 443 (490)
Q Consensus 440 ~~l~ 443 (490)
.++-
T Consensus 224 ~l~~ 227 (274)
T 2x8a_A 224 ALVR 227 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 11
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=237.84 Aligned_cols=211 Identities=24% Similarity=0.332 Sum_probs=156.4
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR---- 290 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~---- 290 (490)
+.+|++|+|.+++|+.|.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 5789999999999999987665 58888899999999999999999999999999999999999999999998763
Q ss_pred --ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC
Q 011254 291 --GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG 366 (490)
Q Consensus 291 --~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~ 366 (490)
+...++.+|..+. .++||||||+|.+...+....... ........+..||+.+++....
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~---------------~~~~~~~~l~~ll~~~~~~~~~-- 143 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF---------------SNTEEEQTLNQLLVEMDGMGTT-- 143 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------CHHHHHHHHHHHTCCTT--
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCc---------------cchhHHHHHHHHHHHhhCcCCC--
Confidence 2345677777654 589999999999865221110000 0223356788999999987553
Q ss_pred CcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH--HHHhhhcc-CCCHHHHHHHHH
Q 011254 367 DERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLE--VEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 367 ~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~--i~~l~~~~-~~tpa~i~~~l~ 443 (490)
..++||+|||.++.||++++|||||+..++++.|+.++|.+|++.++.........+ ...+.... ++++++|.+++.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999987654444333 24455443 589999988764
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.6e-28 Score=259.78 Aligned_cols=211 Identities=25% Similarity=0.353 Sum_probs=169.7
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--- 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 290 (490)
.+.+|++|+|.++.|+++.+.+. ++.++..|.++|...++|+||+||||||||+|++++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 45689999999999999988765 67889999999999999999999999999999999999999999999988863
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 291 ---GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
+...++.+|..+. .|+||||||||.+...+... .. +.......++++||..||++.+.
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~--~~--------------g~~~~~~~~l~~LL~~ld~~~~~- 152 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG--LG--------------GGHDEREQTLNQLLVEMDGFDSK- 152 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------------------------CHHHHHHHHHHHHHHHSCGG-
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc--cC--------------cCcHHHHHHHHHHHHHHhccCCC-
Confidence 3456778887764 79999999999986522110 00 00233467899999999998654
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
..++||+|||+++.|||+++||||||.+|+++.|+.++|..|++.++......-..++..++..+ +++++|+.+++-
T Consensus 153 -~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 153 -EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp -GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred -CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999988754322122345555543 589999988763
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.7e-28 Score=242.75 Aligned_cols=215 Identities=24% Similarity=0.286 Sum_probs=173.7
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR 290 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 290 (490)
...++.+|++|+|.+++++.|.+.+..++..++.|..+|...++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred C------hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 291 G------NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 291 ~------~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
+ ...++.+|..+. .|+||||||+|.+...+.. ... .........+..+++.++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~--------------~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTD--ALT--------------GGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSS--SCC--------------GGGGHHHHHHHHHHHHHHTTC
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCcc--ccC--------------CccHHHHHHHHHHHHHhhCCC
Confidence 2 345666666553 6799999999998642110 000 002234567888999998875
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
.. ..++||+|||.++.+|++++|||||+..|+++.|+.+++.+|++.++.........++..++... ++++++|..+
T Consensus 153 ~~--~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 153 AR--GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SS--SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHH
T ss_pred CC--CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 54 45999999999999999999999999999999999999999999998765433333455555543 4899999887
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+.
T Consensus 231 ~~ 232 (285)
T 3h4m_A 231 CT 232 (285)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=245.10 Aligned_cols=209 Identities=22% Similarity=0.269 Sum_probs=172.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEecccc--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTNL-- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~-- 289 (490)
.++.+|++|+|.+++|+.|.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34678999999999999999999999999998874 35667999999999999999999999999 899999998876
Q ss_pred ----CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 290 ----RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 290 ----~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
.....++.+|..+. +|+||||||||.+...+... ........+++||..+||+..
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-------------------~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-------------------ESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-------------------CTTHHHHHHHHHHHHHHCSSS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-------------------cchHHHHHHHHHHHHHhcccc
Confidence 24567888887653 78999999999986522110 023345678999999999854
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhcc-CCCHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
. ...++||+|||+++.||++++| ||+.+|+++.|+.++|..|++.++......+ ..++..++..+ ++|++||..+
T Consensus 146 ~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 146 D-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp C-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred c-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2 3569999999999999999999 9999999999999999999999997665443 45677777655 5999999887
Q ss_pred HHc
Q 011254 442 LMR 444 (490)
Q Consensus 442 l~~ 444 (490)
+..
T Consensus 223 ~~~ 225 (322)
T 1xwi_A 223 VRD 225 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 15
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.4e-27 Score=233.09 Aligned_cols=212 Identities=22% Similarity=0.349 Sum_probs=163.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.++.+|++|+|.+++++.+.+.+ .++.+++.|..+|...++|+|||||||||||++++++|+.++.+++.++++++.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 45789999999999999998766 467888888999999999999999999999999999999999999999988762
Q ss_pred ----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
....++.+|..+. .|+||||||||.+...+.. .. ..........++.+|..+|++...
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~--~~--------------~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA--GL--------------GGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCST--TS--------------CCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCC--Cc--------------CCCchHHHHHHHHHHHHhhCcccC
Confidence 3467788887764 5799999999988641110 00 000222346788999999998654
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
..++||+|||+++.+|++++|||||+..|+++.|+.++|.+|++.++.........++..+.... +++++|+.+++.
T Consensus 149 --~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 149 --EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp --SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred --CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999998653221122234444443 479999987654
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=8.3e-28 Score=243.08 Aligned_cols=209 Identities=20% Similarity=0.255 Sum_probs=171.7
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC-
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR- 290 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~- 290 (490)
-.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 456789999999999999999999999999988876 455678999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
....++.+|..+. .|+||||||||.+...+.. .. ........+.||..++++..
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~--~~-----------------~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE--GE-----------------SEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------------------------CCTHHHHHHHHHHHGGGGT
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC--Cc-----------------chHHHHHHHHHHHHhccccc
Confidence 2455777777654 6899999999998652211 10 23446778999999999854
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhcc-CCCHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
. ...++||+|||+++.||++++| ||+..|+++.|+.++|..|++.++......+ ..++..++..+ ++++++|..+
T Consensus 151 ~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 151 D-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp S-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred c-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 3469999999999999999999 9999999999999999999999998765544 45677777665 4999999887
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+.
T Consensus 228 ~~ 229 (322)
T 3eie_A 228 VK 229 (322)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=3.6e-27 Score=241.77 Aligned_cols=208 Identities=20% Similarity=0.267 Sum_probs=168.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc---
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL--- 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~--- 289 (490)
.++.+|++|+|.+++++.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++++
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999999988876 56677899999999999999999999999999999998775
Q ss_pred ---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 290 ---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 290 ---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
.....++.+|..+. .|+||||||||.+...+.. .. ........++||..||++...
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~--~~-----------------~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE--GE-----------------SEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------------------------CTHHHHHHHHHHHHHHHCC--
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC--Cc-----------------chHHHHHHHHHHHHhhccccc
Confidence 23556777777664 7899999999998652211 00 233466788999999988542
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhcc-CCCHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
...++||+|||+++.||++++| ||+..|+++.|+.++|..|++.++......+ ..++..++..+ ++++++|..++
T Consensus 185 -~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 185 -SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred -CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2459999999999999999999 9999999999999999999999997665443 44667777655 48999998876
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
.
T Consensus 262 ~ 262 (355)
T 2qp9_X 262 K 262 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=9.2e-27 Score=247.92 Aligned_cols=209 Identities=22% Similarity=0.323 Sum_probs=173.7
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--- 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 290 (490)
.+.+|++|+|....++.|.+.+..++.+++.|..+|.+.++++|||||||||||++|+++|++++.+++.++++++.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 291 ---GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
....++.+|..+. .|+||||||||.+...+... ........++.||..||++...
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-------------------~~~~~~~~~~~LL~~ld~~~~~- 338 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-------------------HGEVERRIVSQLLTLMDGLKQR- 338 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-------------------CCHHHHHHHHHHHHHHHHSCTT-
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-------------------cchHHHHHHHHHHHHhhccccC-
Confidence 2346777887764 67999999999997522110 0122356788999999988654
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
..++||+|||+++.||++++|||||+..|+++.|+.++|..|++.++.........++..++.. .+++++++..++.
T Consensus 339 -~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 339 -AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp -SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred -CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999998865433333345566554 3599999987754
No 19
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=1.2e-27 Score=234.67 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=162.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.++.+|++|+|.++.++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345789999999999999988665 68899999999999999999999999999999999999999999999887752
Q ss_pred ----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
+...++.+|..+. .++||||||+|.+...+....... ........++.||+.+++..+.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---------------~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVS---------------GNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------------------CCCSCSSTTTTTTTTTCSSCS
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCC---------------CchhHHHHHHHHHHHhhCcccC
Confidence 2233445555543 589999999999865221111000 0222345677889999987542
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
...++||+|||.++.||++++|||||+..|+++.|+.++|..+++.++.........++..++... +++++++.+++.
T Consensus 149 -~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 149 -NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp -CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred -CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 345899999999999999999999999999999999999999999998654222122234444433 488999887653
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=2.7e-26 Score=244.10 Aligned_cols=211 Identities=24% Similarity=0.324 Sum_probs=166.9
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC--
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG-- 291 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~-- 291 (490)
++.+|++|+|.++.|+++.+.+. ++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67899999999999999987654 677888899999999999999999999999999999999999999999987632
Q ss_pred ----hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 292 ----NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 292 ----~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
...++.+|..+. .|+|+||||||.+...+... .. ........++++||..|||....
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~--~~--------------~~~~e~~~~l~~LL~~Ldg~~~~- 167 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG--VG--------------GGNDEREQTLNQLLVEMDGFEKD- 167 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS--TT--------------TSSHHHHHHHHHHHHHGGGCCSS-
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC--cC--------------CCcHHHHHHHHHHHHHhcccccC-
Confidence 345777787764 58999999999885421100 00 00122356789999999998654
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
..+++|++||+|+.||++++||||||.+|+++.|+.++|.+|++.++......-..++..++..+ +++++|+.+++.
T Consensus 168 -~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 168 -TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp -CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred -ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44899999999999999999999999999999999999999999887543222122344444443 589999988764
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=1.8e-25 Score=217.83 Aligned_cols=212 Identities=24% Similarity=0.334 Sum_probs=162.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.++.+|++++|.++.+.++.+... ++..+..+..++...++|++|+||||||||+|++++|+.++.+++.++..++.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 455799999999999999977655 56778889999999999999999999999999999999999999999876541
Q ss_pred ----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
....+..+|..+. .|++++|||||.+...+...... ........++.+++.++|....
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~----------------~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG----------------GNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-------------------------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccc----------------cchHHHHHHHHHHHHHhCCCCC
Confidence 1345667777764 58999999999886422110000 0122345678899999987553
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
..++++++||+|+.||++++|||||+.+|+++.|+.++|.+|++.++.........++..++... +++++|+.+++.
T Consensus 153 --~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 --TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp --CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred --CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999887543222122345555543 588999987754
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=2.3e-26 Score=242.62 Aligned_cols=209 Identities=22% Similarity=0.267 Sum_probs=167.8
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEeccccC-
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELTNLR- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~s~~~- 290 (490)
.++.+|++|+|.+++|+.|.+.+..++.+++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45689999999999999999999999999888764 34567899999999999999999999999 8999999988762
Q ss_pred -----ChHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 291 -----GNMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 291 -----~~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
....++.+|..+ ..|+||||||||.+...+... ........+++||..||++..
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-------------------~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-------------------ESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-------------------CCGGGHHHHHHHHTTTTCSSC
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-------------------cccHHHHHHHHHHHHHhCccc
Confidence 234577777665 368999999999986421110 023346778999999999854
Q ss_pred CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhcc-CCCHHHHHHH
Q 011254 364 SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKA-KVTPADVAEQ 441 (490)
Q Consensus 364 ~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~ 441 (490)
. ...++||+|||+++.||++|+| ||+..|+++.|+.++|..|++.++......+ ..++..++..+ ++++++|..+
T Consensus 268 ~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 268 D-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp C-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred C-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2 3469999999999999999999 9999999999999999999999987654433 34566776654 5899999887
Q ss_pred HHc
Q 011254 442 LMR 444 (490)
Q Consensus 442 l~~ 444 (490)
+..
T Consensus 345 ~~~ 347 (444)
T 2zan_A 345 VRD 347 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=230.56 Aligned_cols=211 Identities=23% Similarity=0.309 Sum_probs=167.9
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR 290 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~ 290 (490)
...+|.+|++|+|.+.+++.|.+.+..++.+++.|...+. .++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 3567889999999999999999999999998888887774 478999999999999999999999999999999998873
Q ss_pred ------ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc
Q 011254 291 ------GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW 362 (490)
Q Consensus 291 ------~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~ 362 (490)
....++.+|..+. .++||||||||.++..+.. .. .......+..||..++|+.
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~--~~-----------------~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE--GE-----------------HDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------------------CTHHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC--cc-----------------chHHHHHHHHHHHHhhccc
Confidence 3445667776553 6799999999999652211 00 2334667888999999987
Q ss_pred cCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch-HHHHHhhhcc-CCCHHHHHH
Q 011254 363 SSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF-LEVEGLIEKA-KVTPADVAE 440 (490)
Q Consensus 363 s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~i~~ 440 (490)
......++||+|||+++.||++++| ||+.+|+++.|+.++|..|++.++......+. ..+..++... +++++++..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 6555679999999999999999999 99999999999999999999999977655554 4455665543 589999987
Q ss_pred HHH
Q 011254 441 QLM 443 (490)
Q Consensus 441 ~l~ 443 (490)
++.
T Consensus 325 L~~ 327 (389)
T 3vfd_A 325 LAK 327 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=227.72 Aligned_cols=209 Identities=18% Similarity=0.300 Sum_probs=166.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC-
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG- 291 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~- 291 (490)
.++.+|++|+|.+++++.|.+.+..++.+++.|...+ ..++++|||||||||||++|+++|++++.+++.++++++..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3578999999999999999999999998888887765 55789999999999999999999999999999999988732
Q ss_pred -----hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 292 -----NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 292 -----~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
...++.+|..+. .++||||||||.+...+.. .. .......++.||..+++....
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~--~~-----------------~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD--GE-----------------HESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------------------------CHHHHHHHHHHHHHHC----
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC--Cc-----------------chHHHHHHHHHHHHHhccccc
Confidence 345666666553 6899999999998652211 00 223456788999999998655
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhcc-CCCHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKA-KVTPADVAEQL 442 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~i~~~l 442 (490)
....++||+|||.++.||++++| ||+..++++.|+.++|..++..++......+ ...+..++..+ +++++++..++
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55679999999999999999999 9999999999999999999999886654444 34566666654 58999998876
Q ss_pred H
Q 011254 443 M 443 (490)
Q Consensus 443 ~ 443 (490)
-
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=2.5e-24 Score=212.82 Aligned_cols=212 Identities=24% Similarity=0.334 Sum_probs=161.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.++.+|++++|.++.++++.+... ++..+..+..++...++|++|+||||||||+|+++||+.++.+++.++..++.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 467899999999999999877554 56778889999999999999999999999999999999999999999876541
Q ss_pred ----ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
....+..+|..+. .|+++++||||.+...+...... ........++.+++.++|....
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~----------------~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG----------------GNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC------------------------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCC----------------cchHHHHHHHHHHHHHhCCCCC
Confidence 1244667777654 58999999999885422110000 0112355678899999987543
Q ss_pred CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 365 CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 365 ~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
..++++++||+|+.||++++|||||+.+|+++.|+.++|.+|++.++......-..++..++... +++++|+..++.
T Consensus 177 --~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 177 --TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp --CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred --CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999887543221122344455443 588888877654
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=8.6e-25 Score=217.51 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=163.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-- 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-- 290 (490)
.++.+|++++|.+++++.|.+.+..+..+++.|..++ ..++++||+||||||||++|+++|++++.+++.++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4578999999999999999999999888888887765 4568999999999999999999999999999999988763
Q ss_pred ----ChHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC
Q 011254 291 ----GNMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS 364 (490)
Q Consensus 291 ----~~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~ 364 (490)
....++.+|..+ ..|+||||||+|.+...+... . ........+.||..+|++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~-----------------~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--E-----------------HEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------------------------CCSHHHHHHHHHHHHHCC--
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--c-----------------chHHHHHHHHHHHHHhccccc
Confidence 234456666554 368999999999987522110 0 122355677899999987543
Q ss_pred -CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCch-HHHHHhhhc-cCCCHHHHHHH
Q 011254 365 -CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLF-LEVEGLIEK-AKVTPADVAEQ 441 (490)
Q Consensus 365 -~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~-~~i~~l~~~-~~~tpa~i~~~ 441 (490)
.+..++||+|||.++.||++++| ||+..++++.|+.+++..|++.++......+. ..+..++.. .+++++++..+
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 23458999999999999999999 99999999999999999999998876554443 345555554 36899999776
Q ss_pred HH
Q 011254 442 LM 443 (490)
Q Consensus 442 l~ 443 (490)
+-
T Consensus 233 ~~ 234 (297)
T 3b9p_A 233 AK 234 (297)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=1.2e-25 Score=224.45 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=122.2
Q ss_pred HhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC------ChHHHHHHHHhcc------CCeEEEEeccc
Q 011254 247 NVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR------GNMELRNLLIATE------NKSILVVEDID 314 (490)
Q Consensus 247 ~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~------~~~~l~~l~~~~~------~~sIl~iDdiD 314 (490)
..+..+|+|+|||||||||||++|+++|++++.+++.++++++. ....++.+|..+. .|+||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34678889999999999999999999999999999999988763 2345777777662 78999999999
Q ss_pred hhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc---------CCCCcEEEEEecCCCCCCCccc
Q 011254 315 CSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS---------SCGDERIIIFTTNHKDRLDPAF 385 (490)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s---------~~~~~~iiI~TTN~~~~LD~aL 385 (490)
.+.+. +.+... .....+...+.||+.+|+... ....+++||+|||+++.||++|
T Consensus 110 ~~~~~--~~~~~~---------------~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al 172 (293)
T 3t15_A 110 AGAGR--MGGTTQ---------------YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPL 172 (293)
T ss_dssp -------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHH
T ss_pred hhcCC--CCCCcc---------------ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHH
Confidence 98751 111100 012345667889999985531 1224589999999999999999
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccCCCHHHH
Q 011254 386 LRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTPADV 438 (490)
Q Consensus 386 lRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i 438 (490)
+||||||.+|++ |+.++|..|++.++...+. ...++..+... ++++++
T Consensus 173 ~R~~R~d~~i~~--P~~~~r~~Il~~~~~~~~~-~~~~l~~~~~~--~~~~~l 220 (293)
T 3t15_A 173 IRDGRMEKFYWA--PTREDRIGVCTGIFRTDNV-PAEDVVKIVDN--FPGQSI 220 (293)
T ss_dssp HHHHHEEEEEEC--CCHHHHHHHHHHHHGGGCC-CHHHHHHHHHH--SCSCCH
T ss_pred hCCCCCceeEeC--cCHHHHHHHHHHhccCCCC-CHHHHHHHhCC--CCcccH
Confidence 999999999984 6999999999988864432 24566666655 555555
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=1.7e-27 Score=267.94 Aligned_cols=212 Identities=22% Similarity=0.318 Sum_probs=167.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc----
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL---- 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~---- 289 (490)
+..+|++++|.+++|+.|.+.+..++.++..|..+|..+++++|||||||||||+||+++|++++.+++.++++++
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 4578999999999999999998888888888889999999999999999999999999999999999999998886
Q ss_pred --CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 290 --RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 290 --~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
.....++.+|..+. .|+||||||||.++..+....... .......+++||+.||++...
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~----------------~~~~~~v~~~LL~~ld~~~~~- 614 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG----------------GGAADRVINQILTEMDGMSTK- 614 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHH----------------HHHHHHHHHHHHTTCC------
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCc----------------chhHHHHHHHHHHHHhccccc-
Confidence 34567888888764 689999999999875322110000 123467889999999998664
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQLM 443 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l~ 443 (490)
..++||+|||+++.||||++|||||+.+|++++|+.++|..|++.++.........++..++.. .++|+++|.+++.
T Consensus 615 -~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 615 -KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp --CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred -CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999865422222233444443 3599999988764
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=7.4e-23 Score=230.23 Aligned_cols=208 Identities=22% Similarity=0.325 Sum_probs=170.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--- 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 290 (490)
++.+|++|+|.+++++.|.+.+..++.+++.|..++...++++|||||||||||+|+++||+.++.+++.+++.++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999987763
Q ss_pred ---ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCC
Q 011254 291 ---GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSC 365 (490)
Q Consensus 291 ---~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~ 365 (490)
....++.+|..+. .|+||||||||.++..+... ........+..|+..++|+...
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-------------------~~~~~~~~~~~Ll~ll~g~~~~- 338 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-------------------HGEVERRIVSQLLTLMDGLKQR- 338 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-------------------CSHHHHHHHHHHHHHHHSSCTT-
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-------------------cchHHHHHHHHHHHHhhhhccc-
Confidence 2345777777654 68999999999987522110 0122356778899999998765
Q ss_pred CCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhc-cCCCHHHHHHHH
Q 011254 366 GDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEK-AKVTPADVAEQL 442 (490)
Q Consensus 366 ~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~i~~~l 442 (490)
..+++|+|||+++.||+++.|+|||+..|+++.|+.++|..+++.++.........++..++.. .+++++++...+
T Consensus 339 -~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 339 -AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp -SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred -ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 4589999999999999999999999999999999999999999988765432222234555544 358899887764
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=3.9e-21 Score=203.26 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=121.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc--CcEEEEeccccC
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELTNLR 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~l~~s~~~ 290 (490)
.+...|++++|.+++++.+...+..+ +.|..+++|+|||||||||||++|+++|++++ .+++.++++.+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 34457899999999999887766432 33667789999999999999999999999999 999999998873
Q ss_pred C-----hHHHHHHHHhc-----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 291 G-----NMELRNLLIAT-----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 291 ~-----~~~l~~l~~~~-----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
+ ...++++|..+ ..|+||||||||.++..+...............................+.++..++.
T Consensus 103 ~~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp CSSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 2 23488888876 3799999999999986332211000000000000000000011112333456666653
Q ss_pred cccCCCCcEEEEEecCCCCCCCccccCCCceee--EEEeCCCCH
Q 011254 361 LWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDV--HIHMSYCTS 402 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~--~I~~~~p~~ 402 (490)
.....++.++|++|||+++.+|+++.||||||. ++.++.|+.
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 222334446666899999999999999999999 667777754
No 31
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=8.4e-19 Score=177.38 Aligned_cols=196 Identities=12% Similarity=0.153 Sum_probs=145.5
Q ss_pred CcceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 205 DVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 205 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
..|.. ...|.+|++++|.+..++.+...+..... +.....++||+||||||||++|+++|+.++.+++.+
T Consensus 17 ~~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 35653 34677999999999999998887764432 123456899999999999999999999999999999
Q ss_pred eccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc-
Q 011254 285 ELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS- 363 (490)
Q Consensus 285 ~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s- 363 (490)
++..+.....+...+.....+++|||||||.+.. .....|+..++...-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------------------------~~~~~Ll~~l~~~~~~ 136 (338)
T 3pfi_A 87 AAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP------------------------------AIEEVLYPAMEDYRLD 136 (338)
T ss_dssp EGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH------------------------------HHHHHHHHHHHTSCC-
T ss_pred cchhccchhHHHHHHHhccCCCEEEEechhhcCH------------------------------HHHHHHHHHHHhccch
Confidence 9999888888989998888999999999998732 123345555543210
Q ss_pred -------------CCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH-HHHhhh
Q 011254 364 -------------SCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLE-VEGLIE 429 (490)
Q Consensus 364 -------------~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~-i~~l~~ 429 (490)
.....+++|++||....++++|++ ||+.+|+|+.|+.+++..++..++......+.++ +..++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 137 IIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK 214 (338)
T ss_dssp --------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred hhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 000137899999999999999999 9999999999999999999998886554444433 344444
Q ss_pred ccCCCHHHHHHHH
Q 011254 430 KAKVTPADVAEQL 442 (490)
Q Consensus 430 ~~~~tpa~i~~~l 442 (490)
...-.+.++.+.+
T Consensus 215 ~~~G~~r~l~~~l 227 (338)
T 3pfi_A 215 RSRSTPRIALRLL 227 (338)
T ss_dssp TTTTCHHHHHHHH
T ss_pred HHCcCHHHHHHHH
Confidence 4445555554443
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.9e-20 Score=195.73 Aligned_cols=162 Identities=14% Similarity=0.178 Sum_probs=74.2
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCC-CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC--------
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR-------- 290 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~-------- 290 (490)
.|+|+++.|+.|...+..++.++..+...+. .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999888877666655544443 3678999999999999999999999999999999987652
Q ss_pred ChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEE
Q 011254 291 GNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERI 370 (490)
Q Consensus 291 ~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~i 370 (490)
....++.+|..+.. ++++||+|.+..... .......++.||+.|||+.+... +
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~~~~----------------------~~~e~rvl~~LL~~~dg~~~~~~---v 148 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRARAE----------------------DVAEERILDALLPPAKNQWGEVE---N 148 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhccch----------------------hhHHHHHHHHHHHHhhccccccc---c
Confidence 34567777765432 334777776532100 23346789999999999976422 2
Q ss_pred EEEe-cCCCCCCCccccCCCceeeEEEeCCCCHH-HHHHHH
Q 011254 371 IIFT-TNHKDRLDPAFLRPGRMDVHIHMSYCTSC-GFKMLA 409 (490)
Q Consensus 371 iI~T-TN~~~~LD~aLlRpGR~d~~I~~~~p~~~-~r~~L~ 409 (490)
+++ ||+++.||+||+||||||++|+++.|+.. ++.+|+
T Consensus 149 -~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 149 -HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------
T ss_pred -ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 454 99999999999999999999999999987 555554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=3.6e-19 Score=177.55 Aligned_cols=178 Identities=17% Similarity=0.248 Sum_probs=135.5
Q ss_pred cc-ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCc---ceeeeCCCCCcHHHHHHHHHHhcc-------CcEEEEec
Q 011254 218 FD-TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKR---GYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLEL 286 (490)
Q Consensus 218 f~-~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~r---g~LL~GPpGtGKT~la~aiA~~l~-------~~~~~l~~ 286 (490)
++ +|+|.+++|+.|.+.+..+. .+..+.+.|...++ ++|||||||||||++|+++|+.++ .+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 69999999999998887655 36667777765443 599999999999999999999984 38899998
Q ss_pred cccCC------hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 287 TNLRG------NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 287 s~~~~------~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
+.+.+ ...+..+|..+ .++||||||+|.++..+.. .......++.|++.++.
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~---------------------~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNE---------------------RDYGQEAIEILLQVMEN 165 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC------------------------CCTHHHHHHHHHHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCc---------------------ccccHHHHHHHHHHHhc
Confidence 87632 34566666655 5789999999988631110 12345677888998886
Q ss_pred cccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHH
Q 011254 361 LWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEV 424 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i 424 (490)
. ...++||+|||..+ .++|+|++ ||+.+|+|+.|+.+++..|++.++......+.++.
T Consensus 166 ~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 166 N----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp C----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred C----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3 23578889998654 35799999 99999999999999999999999876555444443
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.78 E-value=5.8e-18 Score=169.77 Aligned_cols=190 Identities=18% Similarity=0.178 Sum_probs=145.1
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCCh
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGN 292 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~ 292 (490)
..|.+|++++|.+..++.+...+...... ...++++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 45779999999999998888777644221 1235789999999999999999999999999999999988877
Q ss_pred HHHHHHHHh-ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc-----cC--
Q 011254 293 MELRNLLIA-TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW-----SS-- 364 (490)
Q Consensus 293 ~~l~~l~~~-~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~-----s~-- 364 (490)
..+...+.. ...+++|||||||.+.. .....|+..++... ..
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~------------------------------~~~~~L~~~l~~~~~~~v~~~~~ 127 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR------------------------------QAEEHLYPAMEDFVMDIVIGQGP 127 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH------------------------------HHHHHHHHHHHHSEEEECCSSSS
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc------------------------------chHHHHHHHHHhhhhHHhccccc
Confidence 888888777 56889999999998732 11233444444321 00
Q ss_pred -------CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchH-HHHHhhhccCCCHH
Q 011254 365 -------CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFL-EVEGLIEKAKVTPA 436 (490)
Q Consensus 365 -------~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~-~i~~l~~~~~~tpa 436 (490)
....+++|+|||.++.++++|.+ ||+.+++++.|+.+++..++..++...+..+.+ .++.++....-.|.
T Consensus 128 ~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 128 AARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205 (324)
T ss_dssp SCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHH
T ss_pred cccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Confidence 01247899999999999999998 999999999999999999999988665555544 34555555556777
Q ss_pred HHHHHH
Q 011254 437 DVAEQL 442 (490)
Q Consensus 437 ~i~~~l 442 (490)
++.+.+
T Consensus 206 ~l~~~l 211 (324)
T 1hqc_A 206 VAKRLF 211 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=2.1e-17 Score=166.14 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=121.1
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.|.. -..|.+|++++|.++.++.+...+. ....+..+|++||||||||++++++|+.++.+++.++
T Consensus 15 ~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 5643 3568999999999999887776654 2234567899999999999999999999999999999
Q ss_pred ccccCChHHHHHHHHhc----c---CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 286 LTNLRGNMELRNLLIAT----E---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 286 ~s~~~~~~~l~~l~~~~----~---~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
++... ...++..+... + .+.||||||+|.+.+ ....+.|+..+
T Consensus 81 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------------------------~~~~~~L~~~l 130 (324)
T 3u61_B 81 GSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------------------------AESQRHLRSFM 130 (324)
T ss_dssp TTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------------------------HHHHHHHHHHH
T ss_pred ccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------------------------HHHHHHHHHHH
Confidence 87754 55666555432 1 578999999998841 11234566666
Q ss_pred cccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 359 DGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
+... ..+.+|+|||.+..++++|.+ |+. .++|+.|+.+++..++..++
T Consensus 131 e~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 131 EAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 6542 236788999999999999999 884 69999999999887777654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=3e-17 Score=163.07 Aligned_cols=173 Identities=17% Similarity=0.275 Sum_probs=121.9
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHh-CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC-------
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG------- 291 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~-g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------- 291 (490)
.++|.++.++.|...+...+.+....... +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999988776543322111110 1234678999999999999999999999999999999887632
Q ss_pred -hHHHHHHHHhc-------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 292 -NMELRNLLIAT-------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 292 -~~~l~~l~~~~-------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
...++.++... ..++||||||+|.+........ .........+.||..+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~------------------~~~~~~~~~~~Ll~~le~~~~ 157 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG------------------ADVSREGVQRDLLPLVEGSTV 157 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS------------------SHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc------------------cchhHHHHHHHHHHHhcCCeE
Confidence 34566666543 3479999999998853110000 001112335678888886421
Q ss_pred C------CCCcEEEEEe----cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011254 364 S------CGDERIIIFT----TNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSY 412 (490)
Q Consensus 364 ~------~~~~~iiI~T----TN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~ 412 (490)
. ....+++|+| ++.+..++|+|++ ||+.+|+|+.|+.+++..|++..
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 158 STKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSS
T ss_pred ecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhh
Confidence 0 1134778888 5678899999998 99999999999999999999843
No 37
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.73 E-value=1.4e-16 Score=149.05 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=116.3
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEec
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 286 (490)
...|.+|++++|.++.++.+.+.+.. .....+||+||||||||++++++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 35688999999999888877665541 112349999999999999999999986 456888888
Q ss_pred cccCChHHHHHHHHhc--------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 287 TNLRGNMELRNLLIAT--------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 287 s~~~~~~~l~~l~~~~--------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
+...+...+...+... ..+.||+|||+|.+.. .....|+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------~~~~~l~~~l 126 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------DAQAALRRTM 126 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------------------------HHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------------------------HHHHHHHHHH
Confidence 7766555555444332 4688999999998732 1233455555
Q ss_pred cccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 359 DGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
+.. .....+|+|||.++.+++++.+ |+. .++++.|+.++...++..++..
T Consensus 127 ~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 127 EMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp HHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred Hhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHH
Confidence 543 2347889999999999999998 887 8999999999999998877643
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=1.6e-16 Score=156.07 Aligned_cols=167 Identities=22% Similarity=0.260 Sum_probs=114.6
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-C--C----
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL-R--G---- 291 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~-~--~---- 291 (490)
+.+++..+..+.++.....+. ......+...++++|||||||||||++|+++|+.++.+++.+++++. . .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 446666666566655422221 22333456677899999999999999999999999999999987653 1 1
Q ss_pred hHHHHHHHHhc--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcE
Q 011254 292 NMELRNLLIAT--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDER 369 (490)
Q Consensus 292 ~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~ 369 (490)
...++.+|..+ ..++||||||||.+++.... . .......+..|+..+++... .+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~------------------~~~~~~~l~~L~~~~~~~~~-~~~~~ 168 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI--G------------------PRFSNLVLQALLVLLKKAPP-QGRKL 168 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT--T------------------TBCCHHHHHHHHHHTTCCCS-TTCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC--C------------------hhHHHHHHHHHHHHhcCccC-CCCCE
Confidence 14566777664 36899999999998642110 0 12234556667777776543 24468
Q ss_pred EEEEecCCCCCCCc-cccCCCceeeEEEeCCCCH-HHHHHHHHH
Q 011254 370 IIIFTTNHKDRLDP-AFLRPGRMDVHIHMSYCTS-CGFKMLASS 411 (490)
Q Consensus 370 iiI~TTN~~~~LD~-aLlRpGR~d~~I~~~~p~~-~~r~~L~~~ 411 (490)
+||+|||.++.+|+ .+.+ ||+..|++|.++. ++...++..
T Consensus 169 ~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 89999999998888 4554 9999999987766 555555543
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=4.5e-16 Score=158.87 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=125.3
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC--cEEEEeccccC
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTNLR 290 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~~~ 290 (490)
.+..+|++++|.+..++.+...+... ..|...++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 33445999999999988765444322 224555689999999999999999999999975 67777654420
Q ss_pred --------------------------------------------------C-----hHHHHHHHHhcc-----------C
Q 011254 291 --------------------------------------------------G-----NMELRNLLIATE-----------N 304 (490)
Q Consensus 291 --------------------------------------------------~-----~~~l~~l~~~~~-----------~ 304 (490)
+ ...++..+..+. .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 1 234444443321 1
Q ss_pred CeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEec---------
Q 011254 305 KSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTT--------- 375 (490)
Q Consensus 305 ~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TT--------- 375 (490)
|+||||||+|.+.. ..++.|+..++... ..+++++|.
T Consensus 190 ~~vl~IDEi~~l~~------------------------------~~~~~L~~~le~~~----~~~~ii~t~~~~~~i~~t 235 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI------------------------------ESFSFLNRALESDM----APVLIMATNRGITRIRGT 235 (368)
T ss_dssp BCEEEEESGGGSBH------------------------------HHHHHHHHHTTCTT----CCEEEEEESCSEEECBTS
T ss_pred CceEEEhhccccCh------------------------------HHHHHHHHHhhCcC----CCeeeeecccceeeeecc
Confidence 57999999998731 23456667665432 234444443
Q ss_pred --CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHH-HHHhhhccC-CCHHHHHHHH
Q 011254 376 --NHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLE-VEGLIEKAK-VTPADVAEQL 442 (490)
Q Consensus 376 --N~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~-i~~l~~~~~-~tpa~i~~~l 442 (490)
|.+..++++|++ ||.. |+|+.|+.+++..+++.++...+..+.++ ++.++.... .++.++.++|
T Consensus 236 ~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 236 SYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp SCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 357889999999 9976 89999999999999998887655555444 344444433 5666665554
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=1.6e-17 Score=170.09 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=118.7
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHH-hCC-CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCC------
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRN-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRG------ 291 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~-~g~-~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~------ 291 (490)
.|+|++..++.|...+.....+...... .+. ..++++||+||||||||++|++||+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999998888654433211000 111 25678999999999999999999999999999999987642
Q ss_pred --hHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 292 --NMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 292 --~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
...+..++... ..++||||||||.+...++.. ... .........+.||..|||...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~--~~~--------------~~~~~~~~~~~Ll~~leg~~~ 159 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNP--SIT--------------RDVSGEGVQQALLKLIEGTVA 159 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC-------------------CHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccc--ccc--------------cccchHHHHHHHHHHhcCcee
Confidence 23455666554 357899999999885421110 000 011123478889999996421
Q ss_pred C-----------------CCCcEEEEEecCCC----------CC-----------------------------------C
Q 011254 364 S-----------------CGDERIIIFTTNHK----------DR-----------------------------------L 381 (490)
Q Consensus 364 ~-----------------~~~~~iiI~TTN~~----------~~-----------------------------------L 381 (490)
. ...++++|+|+|.. .. +
T Consensus 160 ~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~ 239 (363)
T 3hws_A 160 AVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGL 239 (363)
T ss_dssp --------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTC
T ss_pred eccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCC
Confidence 0 11234555555532 11 6
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 382 DPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 382 D~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
+|+|+. |||..+.|+.|+.+.+..|+...+
T Consensus 240 ~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 240 IPEFIG--RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred CHHHhc--ccCeeeecCCCCHHHHHHHHHHHH
Confidence 788887 999999999999999999998533
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.69 E-value=7.7e-16 Score=145.65 Aligned_cols=157 Identities=17% Similarity=0.290 Sum_probs=117.1
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC------------
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 279 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------ 279 (490)
...|.+|++++|.+..++.|...+.. + ..++.++|+||||||||++++++++.++.
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 35678899999999888888766542 1 22457999999999999999999998754
Q ss_pred ------------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 280 ------------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 280 ------------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
+++.++.........++.++.... .+.+|+|||+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------------------ 139 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 139 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------------
T ss_pred HHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------------------
Confidence 344444443333455677776543 47899999999762
Q ss_pred ccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 342 NLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 342 ~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
...+..|+..++.. .....+|++||.++.+++++.+ |+ .+|+++.++.++...++..++....
T Consensus 140 ------~~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~ 202 (250)
T 1njg_A 140 ------RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEH 202 (250)
T ss_dssp ------HHHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcC
Confidence 12345567777653 2358899999999999999988 75 7899999999999999998875443
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=2.6e-16 Score=168.76 Aligned_cols=175 Identities=16% Similarity=0.280 Sum_probs=120.2
Q ss_pred CcceecccCCCCCccccccChhHHHHHHHHHHHHHHcH-HHHHHhCC---CCCcceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 205 DVWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRK-EFYRNVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 205 ~~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~-~~y~~~g~---~~~rg~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
..|.. -..|.+|++|+|.++.++.|.+.+..+.... ..|.+.|. +.++++||+||||||||++|+++|++++++
T Consensus 27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35653 4678899999999999999988887654322 22333333 356899999999999999999999999999
Q ss_pred EEEEeccccCChHHHHHHHH-------------hc-------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccc
Q 011254 281 VYDLELTNLRGNMELRNLLI-------------AT-------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPV 340 (490)
Q Consensus 281 ~~~l~~s~~~~~~~l~~l~~-------------~~-------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~ 340 (490)
++.+++++..+...+...+. .+ ..+.||||||+|.+..
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---------------------- 162 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---------------------- 162 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT----------------------
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch----------------------
Confidence 99999988766544433332 11 3578999999998843
Q ss_pred cccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 341 MNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 341 ~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
.....+..|++.++.. +..+|+|+++.....++ .+. |+...|+|+.|+.+++..++...+...
T Consensus 163 -----~~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 163 -----GDRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp -----TSTTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 1122345566666542 11233333333333443 344 445789999999999998888766443
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=8.5e-17 Score=147.12 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=106.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 46789999999888777766543 1335789999999999999999999997 788888
Q ss_pred EeccccCC--------hHHHHHHHHh---ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 284 LELTNLRG--------NMELRNLLIA---TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 284 l~~s~~~~--------~~~l~~l~~~---~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
+++..+.. ...+..++.. ...+.||+|||+|.+...... .. .. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~----------------~~---~~~~ 141 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DG----------------AM---DAGN 141 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------------------------CC---CCHH
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cc----------------hH---HHHH
Confidence 88766521 1234555543 346889999999998642110 00 11 1122
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLA 409 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~ 409 (490)
.|...++. ..+.+|++||.++ .+|+++++ ||+ .|+++.|+.+++.+|+
T Consensus 142 ~l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 142 MLKPALAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHHhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 22333322 2467888888876 78999999 998 6999999999988764
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.65 E-value=1.3e-15 Score=160.30 Aligned_cols=150 Identities=21% Similarity=0.327 Sum_probs=112.8
Q ss_pred CCCCCccccccChhHH---HHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 213 DHPATFDTLAMDSDMK---QMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k---~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
-.|.+|++++|++.++ +.|...+.. |. ..++|||||||||||++|++||+.++.+++.++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4689999999999887 555554431 11 2579999999999999999999999999999987653
Q ss_pred CChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccccc
Q 011254 290 RGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWS 363 (490)
Q Consensus 290 ~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s 363 (490)
+...++.++..+. .+.||||||||.+.. .....||..++.
T Consensus 87 -~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------------------~~q~~LL~~le~--- 132 (447)
T 3pvs_A 87 -GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------------------SQQDAFLPHIED--- 132 (447)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------------------CCHHHHHT---
T ss_pred -CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------------------------HHHHHHHHHHhc---
Confidence 4556777666543 689999999998732 122346777764
Q ss_pred CCCCcEEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 364 SCGDERIIIFTT--NHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 364 ~~~~~~iiI~TT--N~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
..+++|++| |....++++|++ |+. .+.|+.|+.+++..++.+++..
T Consensus 133 ---~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 133 ---GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp ---TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred ---CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 235666655 445689999999 875 6889999999999999998865
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.64 E-value=9.7e-16 Score=152.56 Aligned_cols=159 Identities=17% Similarity=0.201 Sum_probs=116.4
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEec
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 286 (490)
-..|.+|++++|.+..++.+...+.. | .. ..+|||||||||||++++++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-----------K-NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-----------T-CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-----------C-CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 45788999999999988877665431 1 12 239999999999999999999987 456788888
Q ss_pred cccCChHHHHHHHHh----c----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHh
Q 011254 287 TNLRGNMELRNLLIA----T----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFI 358 (490)
Q Consensus 287 s~~~~~~~l~~l~~~----~----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~i 358 (490)
++..+...++..+.. . .++.||+|||+|.+.. ...+.|+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------~~~~~L~~~l 126 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------DAQAALRRTM 126 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------------------------HHHHTTGGGT
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------------------------HHHHHHHHHH
Confidence 765433333332222 1 3478999999998732 1233455556
Q ss_pred cccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 359 DGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 359 dgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
+.. ....++|++||.++.+++++.+ |+. .++|+.|+.+++..++..++...+..+
T Consensus 127 e~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 127 EMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp SSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred Hhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 543 2457899999999999999998 775 899999999999999988876554444
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.64 E-value=4.8e-15 Score=149.49 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=108.5
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMEL 295 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l 295 (490)
..+++++|.+++++.+...+.. ++++|||||||||||++|+++|+.++.+++.++++.-....++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467889998888877665431 3589999999999999999999999999999887532222222
Q ss_pred HHHH---------HhccC---CeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc---
Q 011254 296 RNLL---------IATEN---KSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG--- 360 (490)
Q Consensus 296 ~~l~---------~~~~~---~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg--- 360 (490)
.... ..... .+||||||+|.+.. ...+.|+..|+.
T Consensus 89 ~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~------------------------------~~~~~Ll~~l~~~~~ 138 (331)
T 2r44_A 89 IGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA------------------------------KVQSALLECMQEKQV 138 (331)
T ss_dssp HEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH------------------------------HHHHHHHHHHHHSEE
T ss_pred CCceeecCCCCceEeccCcccccEEEEEccccCCH------------------------------HHHHHHHHHHhcCce
Confidence 1100 00011 37999999997632 233445555542
Q ss_pred ----cccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 361 ----LWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 361 ----l~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
........++||+|+|..+ .++++|++ ||+.++++++|+.+++.+|++..+..
T Consensus 139 ~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 139 TIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred eeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1111223477888888554 38999999 99999999999999999999988764
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=2.4e-15 Score=149.70 Aligned_cols=160 Identities=17% Similarity=0.277 Sum_probs=113.5
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHH
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMEL 295 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l 295 (490)
+.++|....++.|...+......-. ....+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3577888888888887764422100 001122469999999999999999999998 567999999877543333
Q ss_pred HHHH---------------Hh---ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 296 RNLL---------------IA---TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 296 ~~l~---------------~~---~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
..++ .. ...++||||||+|.+.. ...+.|+..
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------------------------~~~~~Ll~~ 142 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------------------------------DVFNILLQM 142 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH------------------------------HHHHHHHHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH------------------------------HHHHHHHHH
Confidence 3322 11 12458999999997732 234567777
Q ss_pred hcccccCCC-------CcEEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCCHHH
Q 011254 358 IDGLWSSCG-------DERIIIFTTNH--------------------------KDRLDPAFLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 358 idgl~s~~~-------~~~iiI~TTN~--------------------------~~~LD~aLlRpGR~d~~I~~~~p~~~~ 404 (490)
++.-.-..+ .+.++|+|||. .+.++|+|+. ||+..+.++.|+.++
T Consensus 143 le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~ 220 (311)
T 4fcw_A 143 LDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQ 220 (311)
T ss_dssp HHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHH
T ss_pred HhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHH
Confidence 664221100 25789999998 5578899997 999999999999999
Q ss_pred HHHHHHHhhC
Q 011254 405 FKMLASSYLG 414 (490)
Q Consensus 405 r~~L~~~~l~ 414 (490)
+..|++.++.
T Consensus 221 ~~~i~~~~l~ 230 (311)
T 4fcw_A 221 IRQIVEIQMS 230 (311)
T ss_dssp HHHHHHHHTH
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 48
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.63 E-value=3.9e-16 Score=168.37 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=111.7
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChH----
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNM---- 293 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~---- 293 (490)
.++++|.+++++.+.+.+....... ...+..+||+||||||||+|+++||+.++.++..+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~-------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK-------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS-------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc-------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 4568999999988866544221111 11345799999999999999999999999999999887753211
Q ss_pred -----------HHHHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhccc
Q 011254 294 -----------ELRNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGL 361 (490)
Q Consensus 294 -----------~l~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl 361 (490)
.+...|..+. ...||||||||.+... + .....+.||..||..
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~--~------------------------~~~~~~~LL~~ld~~ 206 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSD--F------------------------RGDPSSAMLEVLDPE 206 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------------------CCGGGTCTT
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhh--h------------------------ccCHHHHHHHHHhhh
Confidence 2334455443 4459999999988541 1 011334566666643
Q ss_pred ccC-----------CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 362 WSS-----------CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 362 ~s~-----------~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
... .-..++||+|||.++.+||+|++ ||+ .|+|+.|+.+++..|+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 207 QNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp TTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred hcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 211 00357999999999999999999 996 69999999999999999887
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=2.1e-15 Score=154.97 Aligned_cols=174 Identities=18% Similarity=0.242 Sum_probs=113.2
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHH-----------------HhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYR-----------------NVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~-----------------~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
.|+|++++|+.|...+...+.+...-. .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999888754443322100 011234568999999999999999999999999999
Q ss_pred EEeccccCC--------hHHHHHHHHhc------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchh
Q 011254 283 DLELTNLRG--------NMELRNLLIAT------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQ 348 (490)
Q Consensus 283 ~l~~s~~~~--------~~~l~~l~~~~------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
.++++.+.. ...+..++... ..++||||||||.+...+. ..... ......
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~--------------~~~~~~ 165 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSE--NRSIT--------------RDVSGE 165 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------------------------CH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcC--CCcee--------------cccchH
Confidence 999887631 23355555433 2679999999999864211 10000 011123
Q ss_pred hHHHHHHHHhcccc----cCC-------------CCcEEEEEecCCC---------------------------------
Q 011254 349 VTLSGMLNFIDGLW----SSC-------------GDERIIIFTTNHK--------------------------------- 378 (490)
Q Consensus 349 ~~ls~LL~~idgl~----s~~-------------~~~~iiI~TTN~~--------------------------------- 378 (490)
...+.||..||+.. ... ..++++|+|||..
T Consensus 166 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~ 245 (376)
T 1um8_A 166 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245 (376)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred HHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhh
Confidence 46788888888641 000 0235778887721
Q ss_pred --------CCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011254 379 --------DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASS 411 (490)
Q Consensus 379 --------~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~ 411 (490)
..+.|+|+. |++..|.|+.++.++...++..
T Consensus 246 ~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 246 VQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp CCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 124566666 8989999999999998888874
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=3.2e-15 Score=151.24 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=116.2
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc------C
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------F 279 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~------~ 279 (490)
.|.. -..|.+|++++|.+++++.+...+. . | . ..++||+||||||||++++++|+.++ .
T Consensus 26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~-~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----S-------A-N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----C-------T-T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----c-------C-C-CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 4543 3578899999999999887766543 1 1 1 13499999999999999999999875 3
Q ss_pred cEEEEeccccCChHHHHHHHHh------------------ccCCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 280 DVYDLELTNLRGNMELRNLLIA------------------TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 280 ~~~~l~~s~~~~~~~l~~l~~~------------------~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
.+..+++++..+...++..+.. ...+.||+|||+|.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------------- 147 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------- 147 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------------------
Confidence 5788888775444444433221 12457999999998732
Q ss_pred ccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 342 NLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 342 ~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
...+.|+..++... ....+|++||+++.+++++.+ |+. .++|+.|+.++...++...+...+
T Consensus 148 -------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 148 -------DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp -------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred -------HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhC
Confidence 12345666666542 236677889999999999998 885 899999999999988887775443
No 51
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4.8e-15 Score=147.81 Aligned_cols=154 Identities=13% Similarity=0.204 Sum_probs=116.0
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEec
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 286 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~ 286 (490)
-..|.+|++++|.+..++.+...+.. | ..+. +|||||||||||++++++|+.+ +.+++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 35788999999999998887766531 2 2233 9999999999999999999986 456888887
Q ss_pred cccCChHHHHHHHHhc--------c-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 287 TNLRGNMELRNLLIAT--------E-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 287 s~~~~~~~l~~l~~~~--------~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
++..+...++.++... . ++.||+|||+|.+.. ...+.|+..
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------------------------~~~~~L~~~ 130 (323)
T 1sxj_B 81 SDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------------------------GAQQALRRT 130 (323)
T ss_dssp TSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------------------------HHHHTTHHH
T ss_pred ccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------------------------HHHHHHHHH
Confidence 7655556666655432 2 378999999998732 123345666
Q ss_pred hcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 358 IDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 358 idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
++.. .....+|++||.++.+++++.+ |+. .++|+.|+.++...++...+..
T Consensus 131 le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 131 MELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp HHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred Hhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 6543 2347788899999999999998 664 8999999999999999877643
No 52
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=8.1e-15 Score=149.41 Aligned_cols=156 Identities=16% Similarity=0.277 Sum_probs=117.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
..|.+|++++|.++.++.+...+.. ...+..|||+||||||||++++++|+.++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 5678999999999988888776541 123457999999999999999999998864
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhcc------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccc
Q 011254 280 -----------DVYDLELTNLRGNMELRNLLIATE------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMN 342 (490)
Q Consensus 280 -----------~~~~l~~s~~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 342 (490)
+++.++.........++.++.... .+.||+|||+|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------------------ 133 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------------ 133 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------------------
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH------------------------
Confidence 345555443223345666666543 468999999997721
Q ss_pred cCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCC
Q 011254 343 LNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITE 417 (490)
Q Consensus 343 ~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~ 417 (490)
...+.|+..++.. ...+++|++||.+..+++++.+ |+ ..++|+.|+.++...++..++...+
T Consensus 134 ------~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~ 195 (373)
T 1jr3_A 134 ------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEH 195 (373)
T ss_dssp ------HHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 2345677777653 3458899999999999999988 76 7899999999999999988775433
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4.2e-15 Score=148.43 Aligned_cols=163 Identities=15% Similarity=0.214 Sum_probs=117.1
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-----Cc
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 280 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~ 280 (490)
.|.. ...|.+|++++|.++.++.+...+.. |. ...+|||||||||||++|+++|+.+. .+
T Consensus 14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 4543 46788999999999988887765542 21 12499999999999999999999863 34
Q ss_pred EEEEeccccCChHHHHHHHHh----c----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 281 VYDLELTNLRGNMELRNLLIA----T----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 281 ~~~l~~s~~~~~~~l~~l~~~----~----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
++.+++++..+...++..+.. . .++.||+|||+|.+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------~~~~ 128 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------------------------DAQQ 128 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------------------------HHHH
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------------------------HHHH
Confidence 777777654322223322221 1 3578999999998732 1234
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCc
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPL 420 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l 420 (490)
.|+..++.. .....+|++||.++.+++++.+ |+. .++|+.++.++...++..++...+..+
T Consensus 129 ~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 129 ALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp HHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 566666653 2347788899999999999988 875 799999999999998888776544433
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=1.3e-15 Score=144.98 Aligned_cols=162 Identities=14% Similarity=0.169 Sum_probs=105.7
Q ss_pred ccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEecc
Q 011254 211 NLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELT 287 (490)
Q Consensus 211 ~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s 287 (490)
.+.++.+|+++++.+. .+.+++.+..+... +.++++||+||||||||++++++|+.+. .+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 20 HLPDDETFTSYYPAAG-NDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCCTTCSTTTSCC--C-CHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCCCChhhccCCCC-CHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4556689999998321 23344444443331 2357899999999999999999999875 788888887
Q ss_pred ccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCC
Q 011254 288 NLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGD 367 (490)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~ 367 (490)
++.. .+.+.+....++.+|+|||+|.+... ......|+..++......
T Consensus 90 ~~~~--~~~~~~~~~~~~~vliiDe~~~~~~~----------------------------~~~~~~l~~~l~~~~~~~-- 137 (242)
T 3bos_A 90 IHAS--ISTALLEGLEQFDLICIDDVDAVAGH----------------------------PLWEEAIFDLYNRVAEQK-- 137 (242)
T ss_dssp GGGG--SCGGGGTTGGGSSEEEEETGGGGTTC----------------------------HHHHHHHHHHHHHHHHHC--
T ss_pred HHHH--HHHHHHHhccCCCEEEEeccccccCC----------------------------HHHHHHHHHHHHHHHHcC--
Confidence 6532 12223334467899999999987420 011233445544433221
Q ss_pred cEEEEEecC-CCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 368 ERIIIFTTN-HKD---RLDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 368 ~~iiI~TTN-~~~---~LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
...+|+||| .++ .+++++.+ |+. ..|+++.|+.+++..++..++...
T Consensus 138 ~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 138 RGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp SCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 132444444 444 45688888 776 899999999999999999887543
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.61 E-value=3.6e-15 Score=150.03 Aligned_cols=170 Identities=14% Similarity=0.223 Sum_probs=110.6
Q ss_pred cCCCCCccccc-cChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 212 LDHPATFDTLA-MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 212 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
+.+..+|++++ |... ... ...+..+...+ ...+.+++||||||||||+|++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~a-~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLA-YEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHH-HHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HHH-HHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 55667899997 4332 221 22233333221 1235689999999999999999999999 8999999987
Q ss_pred ccCCh--H-----HHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 288 NLRGN--M-----ELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 288 ~~~~~--~-----~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
.+... . .+..+.....++.||||||||.+... ......|+..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~----------------------------~~~~~~l~~~l~~ 126 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK----------------------------ERTQIEFFHIFNT 126 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC----------------------------hHHHHHHHHHHHH
Confidence 65210 0 01112222345899999999987420 0122234444444
Q ss_pred cccCCCCcEEEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHH
Q 011254 361 LWSSCGDERIIIFTTNHKD---RLDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLE 423 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~~~---~LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~ 423 (490)
+... +.++|+.++|.+. .++++|.+ ||+ ..++++. +.+++..+++.++...+..+.++
T Consensus 127 ~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~ 189 (324)
T 1l8q_A 127 LYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE 189 (324)
T ss_dssp HHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHH
Confidence 3332 2366766777665 68999998 886 7899999 99999999998886544444443
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=6.2e-15 Score=150.39 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=115.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---------cCcEEE
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYD 283 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~ 283 (490)
.+...+++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +..++.
T Consensus 13 ~~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
T 2v1u_A 13 LPDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIY 83 (387)
T ss_dssp STTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3444558899999888888766543211 2345789999999999999999999998 888889
Q ss_pred EeccccCC----------------------hHH-HHHHHHhc---cCCeEEEEeccchhhhhhhhHhhhhhccccccccc
Q 011254 284 LELTNLRG----------------------NME-LRNLLIAT---ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVI 337 (490)
Q Consensus 284 l~~s~~~~----------------------~~~-l~~l~~~~---~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~ 337 (490)
+++....+ ... +..++... ..+.||||||+|.+...
T Consensus 84 i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~------------------ 145 (387)
T 2v1u_A 84 VNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR------------------ 145 (387)
T ss_dssp EETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS------------------
T ss_pred EECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc------------------
Confidence 98775432 122 22222222 34789999999988531
Q ss_pred ccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhh
Q 011254 338 QPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK---DRLDPAFLRPGRMDV-HIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 338 ~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~---~~LD~aLlRpGR~d~-~I~~~~p~~~~r~~L~~~~l 413 (490)
......+..+++.++.... +..+.+|++||.+ +.+++++.+ |+.. .|+|+.++.++...++...+
T Consensus 146 -------~~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 146 -------PGGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp -------TTHHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred -------CCCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 0023445566666554321 2347899999988 788999998 8875 89999999999999999887
Q ss_pred C
Q 011254 414 G 414 (490)
Q Consensus 414 ~ 414 (490)
.
T Consensus 215 ~ 215 (387)
T 2v1u_A 215 E 215 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.59 E-value=4.7e-14 Score=142.88 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=129.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCCh
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGN 292 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~ 292 (490)
-.|.+|+.++|.+.+++.+...+.... ..| ..+..++|+||||||||||++++|+.++.++...+.......
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 457799999998877766654443211 112 233579999999999999999999999999887776666666
Q ss_pred HHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc------cC--
Q 011254 293 MELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW------SS-- 364 (490)
Q Consensus 293 ~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~------s~-- 364 (490)
.++..++.....+.|++|||++.+... . ...|+..++... ..
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~l~~~--~----------------------------~e~L~~~~~~~~~~i~~~~~~~ 140 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHRLNKA--V----------------------------EELLYSAIEDFQIDIMIGKGPS 140 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGGCCHH--H----------------------------HHHHHHHHHTSCCCC-------
T ss_pred HHHHHHHHHccCCCEEEEcchhhcCHH--H----------------------------HHHHHHHHHhcccceeeccCcc
Confidence 777777766667889999999987531 0 001111111100 00
Q ss_pred ------CCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchH-HHHHhhhccCCCHHH
Q 011254 365 ------CGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGITEHPLFL-EVEGLIEKAKVTPAD 437 (490)
Q Consensus 365 ------~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~-~i~~l~~~~~~tpa~ 437 (490)
.-..+.++.+||++..|++++++ ||...+.+++++.+++..+++......+..+.+ .+..++....-+|..
T Consensus 141 ~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~ 218 (334)
T 1in4_A 141 AKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRI 218 (334)
T ss_dssp --------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHH
T ss_pred cccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHH
Confidence 00135677899999999999999 999899999999999999998776544333433 344455555556655
Q ss_pred HHHHH
Q 011254 438 VAEQL 442 (490)
Q Consensus 438 i~~~l 442 (490)
+.+.|
T Consensus 219 a~~ll 223 (334)
T 1in4_A 219 AIRLT 223 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.3e-14 Score=145.64 Aligned_cols=179 Identities=12% Similarity=0.181 Sum_probs=119.3
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEEEeccccCC----------------------hHHHHHH
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELTNLRG----------------------NMELRNL 298 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~l~~s~~~~----------------------~~~l~~l 298 (490)
..+.++|||||||||||++++++++++ ++.++.++|..+.+ ...|.++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456789999999999999999999998 45778888766422 2346667
Q ss_pred HHhc----cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEe
Q 011254 299 LIAT----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFT 374 (490)
Q Consensus 299 ~~~~----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~T 374 (490)
|... ..+.||+|||+|.+. .+..|..|++.... ....++||++
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-----------------------------~q~~L~~l~~~~~~----~~s~~~vI~i 169 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-----------------------------SEKILQYFEKWISS----KNSKLSIICV 169 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-----------------------------CTHHHHHHHHHHHC----SSCCEEEEEE
T ss_pred HHHhhhccCCceEEEEecHHHhh-----------------------------cchHHHHHHhcccc----cCCcEEEEEE
Confidence 7653 357899999999884 12344455554321 2235889999
Q ss_pred cCCCCC----CCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCCCCCCch----------------H-HHHHh---hh
Q 011254 375 TNHKDR----LDPAFLRPGRMD-VHIHMSYCTSCGFKMLASSYLGITEHPLF----------------L-EVEGL---IE 429 (490)
Q Consensus 375 TN~~~~----LD~aLlRpGR~d-~~I~~~~p~~~~r~~L~~~~l~~~~~~l~----------------~-~i~~l---~~ 429 (490)
+|..+. |++++.+ ||. ..|+|+.++.++...|+++.+.......+ + .-+.. +.
T Consensus 170 ~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (318)
T 3te6_A 170 GGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVI 247 (318)
T ss_dssp CCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEE
T ss_pred ecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccc
Confidence 999875 3555566 886 58999999999999999988754221100 0 00000 00
Q ss_pred --ccCCCHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHhhc
Q 011254 430 --KAKVTPADVAEQLM-----RNEVPEIALRELIQFLEIKRRE 465 (490)
Q Consensus 430 --~~~~tpa~i~~~l~-----~~~~~~~al~~l~~~l~~~~~~ 465 (490)
...+++.-| +++. .++|+..||+-+..+.+...++
T Consensus 248 ~~~~~i~~~ai-~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 248 VINHKINNKIT-QLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp EECEECCHHHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHH-HHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 012455444 2222 2689999999999888776553
No 59
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.58 E-value=5.9e-16 Score=141.30 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=100.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 36789999999887777765542 1335689999999999999999999997 788888
Q ss_pred EeccccC----C----hHHHHHHHHhc---cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 284 LELTNLR----G----NMELRNLLIAT---ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 284 l~~s~~~----~----~~~l~~l~~~~---~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
+++..+. . ...+..++... ..+.||+|||+|.+...... .........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---------------------~~~~~~~~~ 142 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV---------------------AEGALDAGN 142 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS---------------------CTTSCCTHH
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc---------------------cccchHHHH
Confidence 8876542 1 12344444443 35789999999988531100 000122233
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCC
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCT 401 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~ 401 (490)
.|+..++. ..+++|++||.++ .+|+++++ ||+. |+++.|+
T Consensus 143 ~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 143 ILKPMLAR------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred HHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 34444432 3477889999775 68999999 9985 9999885
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.57 E-value=1.5e-14 Score=162.01 Aligned_cols=155 Identities=15% Similarity=0.247 Sum_probs=111.1
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCC---CCc-ceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA---WKR-GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~r-g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
+.++|.+..++.|...+.... .|.. .|. ++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 467888888888877776432 1222 122 59999999999999999999998 78899999998743
Q ss_pred -----hHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccc-cC-
Q 011254 292 -----NMELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLW-SS- 364 (490)
Q Consensus 292 -----~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~-s~- 364 (490)
...+...+.. ..++||||||||.+- ...++.||..||.-. ..
T Consensus 563 ~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------------------~~~~~~Ll~~le~g~~~~~ 611 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR-KPYSVVLLDAIEKAH------------------------------PDVFNILLQVLEDGRLTDS 611 (758)
T ss_dssp SCCCC---CHHHHHH-CSSSEEEEECGGGSC------------------------------HHHHHHHHHHHHHSBCC--
T ss_pred ccccccchhhHHHHh-CCCeEEEEeCccccC------------------------------HHHHHHHHHHhccCeEEcC
Confidence 1233333332 357899999998762 234566777777411 00
Q ss_pred -----CCCcEEEEEecCCCCC------------CCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 365 -----CGDERIIIFTTNHKDR------------LDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 365 -----~~~~~iiI~TTN~~~~------------LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
...+++||+|||.+.. ++|+|+. |||..|.|+.|+.+++..|+..++.
T Consensus 612 ~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 612 KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 1134789999997654 7888887 9999999999999999999998774
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=2.6e-14 Score=146.22 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=111.2
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----------cCcEEEEecc
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------NFDVYDLELT 287 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----------~~~~~~l~~s 287 (490)
++++|.++..+.+.+.+..++.. ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999888877655432 235689999999999999999999988 8899999876
Q ss_pred ccC-Ch-----------------------HH-HHHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhccccccccccccc
Q 011254 288 NLR-GN-----------------------ME-LRNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVM 341 (490)
Q Consensus 288 ~~~-~~-----------------------~~-l~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~ 341 (490)
... +. .. +..++.... .+.||+|||+|.+..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~----------------------- 147 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK----------------------- 147 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH-----------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc-----------------------
Confidence 543 21 11 222232232 234999999998853
Q ss_pred ccCCchhhH-HHHHHHHhcccccCCCCcEEEEEecCCC---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 342 NLNQVPQVT-LSGMLNFIDGLWSSCGDERIIIFTTNHK---DRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 342 ~~~~~~~~~-ls~LL~~idgl~s~~~~~~iiI~TTN~~---~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
.. .... +..|+... ..+.||+|||.+ +.+++++.+ ||+.+|+|+.++.++...++..++.
T Consensus 148 --~~-~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 148 --RR-GGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp --ST-TSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred --CC-CCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 10 0122 33444332 348899999987 788999988 8878999999999999999998774
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=1.7e-14 Score=145.79 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=100.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC-------------
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~------------- 279 (490)
.+|.+|++++|.+..++.+...+. . +...++|||||||||||++|+++|+.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~----~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAV----D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH----C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhh----C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 456789999999887765422211 1 12356999999999999999999998863
Q ss_pred --------------------cEEEEeccccCChHH------HHHHHHhc-----------cCCeEEEEeccchhhhhhhh
Q 011254 280 --------------------DVYDLELTNLRGNME------LRNLLIAT-----------ENKSILVVEDIDCSIELQDR 322 (490)
Q Consensus 280 --------------------~~~~l~~s~~~~~~~------l~~l~~~~-----------~~~sIl~iDdiD~l~~~~~r 322 (490)
+++.+.... +... +...+... ..++||||||||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 122211111 1111 12222221 1378999999998732
Q ss_pred HhhhhhcccccccccccccccCCchhhHHHHHHHHhcc----cccCC-----CCcEEEEEecCCCC-CCCccccCCCcee
Q 011254 323 FAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG----LWSSC-----GDERIIIFTTNHKD-RLDPAFLRPGRMD 392 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg----l~s~~-----~~~~iiI~TTN~~~-~LD~aLlRpGR~d 392 (490)
...+.|+..++. +.... ...+++|+|||..+ .++++|++ ||+
T Consensus 159 --------------------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~ 210 (350)
T 1g8p_A 159 --------------------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFG 210 (350)
T ss_dssp --------------------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCS
T ss_pred --------------------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcc
Confidence 123455555553 11110 12578999999755 89999999 999
Q ss_pred eEEEeCCC-CHHHHHHHHHHhh
Q 011254 393 VHIHMSYC-TSCGFKMLASSYL 413 (490)
Q Consensus 393 ~~I~~~~p-~~~~r~~L~~~~l 413 (490)
.+++++.| +.+.+..|++..+
T Consensus 211 ~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 211 LSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEEECCCCCSHHHHHHHHHHHH
T ss_pred eEEEcCCCCcHHHHHHHHHHHH
Confidence 99999999 5777778887643
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=3.7e-14 Score=158.70 Aligned_cols=154 Identities=15% Similarity=0.290 Sum_probs=112.5
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCC----CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCCh---
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGN--- 292 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~--- 292 (490)
.++|.++.++.|...+.. .+.|.. +...+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 467777777777665542 223332 22359999999999999999999999999999999886321
Q ss_pred ----------------HHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHH
Q 011254 293 ----------------MELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLN 356 (490)
Q Consensus 293 ----------------~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 356 (490)
..+...+.. ..++||||||||.+- ...++.||.
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------------------~~~~~~Ll~ 579 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH------------------------------PDVFNILLQ 579 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC------------------------------HHHHHHHHH
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC------------------------------HHHHHHHHH
Confidence 123333333 357999999999762 235667788
Q ss_pred Hhcccc--cCCC-----CcEEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHH
Q 011254 357 FIDGLW--SSCG-----DERIIIFTTNHKD-------------------------RLDPAFLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 357 ~idgl~--s~~~-----~~~iiI~TTN~~~-------------------------~LD~aLlRpGR~d~~I~~~~p~~~~ 404 (490)
.||.-. ...| .+++||+|||... .++|+|+. |||..|.|+.++.++
T Consensus 580 ~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~ 657 (758)
T 1r6b_X 580 VMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDV 657 (758)
T ss_dssp HHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHH
T ss_pred HhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHH
Confidence 777311 1111 3478999999754 57888888 999999999999999
Q ss_pred HHHHHHHhhC
Q 011254 405 FKMLASSYLG 414 (490)
Q Consensus 405 r~~L~~~~l~ 414 (490)
+..|+..++.
T Consensus 658 ~~~i~~~~l~ 667 (758)
T 1r6b_X 658 IHQVVDKFIV 667 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=4.3e-14 Score=160.21 Aligned_cols=157 Identities=15% Similarity=0.199 Sum_probs=106.1
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|.+|+.++|.++..+.+++.+. ...++++||+||||||||++++++|+.+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 46789999999988777766543 1335689999999999999999999998 889999
Q ss_pred EeccccCC--------hHHHHHHHHhcc---CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 284 LELTNLRG--------NMELRNLLIATE---NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 284 l~~s~~~~--------~~~l~~l~~~~~---~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
++++.+.. ...++.++..+. .++||||||+|.+.+.....+ .....+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g----------------------~~~~~~ 289 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG----------------------AVDAGN 289 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------------------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc----------------------hHHHHH
Confidence 99887632 234677776653 578999999999864221100 011122
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCC----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKD----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
.|+..++. .++.+|++||.++ .+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 290 ~L~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 290 MLKPALAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp --HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 23333332 3477888888765 47999999 9986 99999999999999986654
No 65
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=4.9e-14 Score=143.49 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=114.6
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc------cCcEEEEe
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLE 285 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~l~ 285 (490)
+.+...+++++|.++..+.+.+.+...+. ...++.++|+||||||||+|++++++.+ +..++.++
T Consensus 13 l~~~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 13 LLPDYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp GSSSCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34445568899998888877765543221 1335689999999999999999999998 88899888
Q ss_pred ccccCC----------------------hHH-HHHH---HHhccCCeEEEEeccchhhhhhhhHhhhhhccccccccccc
Q 011254 286 LTNLRG----------------------NME-LRNL---LIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQP 339 (490)
Q Consensus 286 ~s~~~~----------------------~~~-l~~l---~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~ 339 (490)
+....+ ... +..+ +.....+.||+|||+|.+...
T Consensus 84 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~-------------------- 143 (386)
T 2qby_A 84 TRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK-------------------- 143 (386)
T ss_dssp HHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS--------------------
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc--------------------
Confidence 654211 122 2222 222234899999999988531
Q ss_pred ccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC---CCCCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhC
Q 011254 340 VMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK---DRLDPAFLRPGRMD-VHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 340 ~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~---~~LD~aLlRpGR~d-~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
.....+..|+..++.+ .+..+.+|++||.+ +.+++++.+ |+. .+|+|+.++.++...++...+.
T Consensus 144 ------~~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 144 ------YNDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp ------SCSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred ------CcCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 0123566777777654 12358889999977 467888887 665 4899999999999999987764
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.56 E-value=3e-14 Score=150.95 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=106.4
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEE
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 282 (490)
..|.+|+.++|.++..+.++..+. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 356789999999988888776554 1335689999999999999999999997 78899
Q ss_pred EEecccc-C--ChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 283 DLELTNL-R--GNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 283 ~l~~s~~-~--~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
.++++.. . ....++.+|..+. .++||||| .. . ...+.|+..
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~--------------------------~---~a~~~L~~~ 286 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------------------I---DASNILKPS 286 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------------------------CCC
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc--------------------------h---hHHHHHHHh
Confidence 8887622 1 1245667776654 58899999 10 0 011223333
Q ss_pred hcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 358 IDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 358 idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
++ ...+.+|++||..+ .+|++|.| ||.. |.|+.|+.+++..|++.++..
T Consensus 287 L~------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 287 LA------RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp TT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred hc------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 33 13588999999988 69999999 9975 999999999999999988765
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=3.1e-14 Score=149.73 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=116.7
Q ss_pred cCCCCCccccc-cChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEe
Q 011254 212 LDHPATFDTLA-MDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 285 (490)
Q Consensus 212 ~~~~~~f~~l~-g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~ 285 (490)
+.+..+|++++ |..... ....+..+...+ +. ..+++||||||||||+|+++||+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 55566899987 543322 223333332221 22 5789999999999999999999998 88899998
Q ss_pred ccccCChHHHH---------HHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHH
Q 011254 286 LTNLRGNMELR---------NLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGML 355 (490)
Q Consensus 286 ~s~~~~~~~l~---------~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 355 (490)
+..+. ..+. .+..... ++.||||||+|.+.+. ..+...|+
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------------------------~~~q~~l~ 217 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------------------------TGVQTELF 217 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------------------------HHHHHHHH
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------------------------hHHHHHHH
Confidence 77652 1111 2222234 6899999999987431 01223355
Q ss_pred HHhcccccCCCCcEEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCCCCCCchHH-HHHhhh
Q 011254 356 NFIDGLWSSCGDERIIIFTTNHKDR---LDPAFLRPGRMD--VHIHMSYCTSCGFKMLASSYLGITEHPLFLE-VEGLIE 429 (490)
Q Consensus 356 ~~idgl~s~~~~~~iiI~TTN~~~~---LD~aLlRpGR~d--~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~-i~~l~~ 429 (490)
..++.+... +..+||.|.+.+.. ++++|++ ||+ ..++++.|+.+++..+++..+...+..+.++ +..++.
T Consensus 218 ~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~ 293 (440)
T 2z4s_A 218 HTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAE 293 (440)
T ss_dssp HHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH
T ss_pred HHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555544332 22555555554554 8899998 886 7899999999999999998875433333333 333344
Q ss_pred ccCCCHHHHHHH
Q 011254 430 KAKVTPADVAEQ 441 (490)
Q Consensus 430 ~~~~tpa~i~~~ 441 (490)
...-++.++...
T Consensus 294 ~~~gn~R~l~~~ 305 (440)
T 2z4s_A 294 NVDDNLRRLRGA 305 (440)
T ss_dssp HCCSCHHHHHHH
T ss_pred hcCCCHHHHHHH
Confidence 444445544443
No 68
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=4.1e-14 Score=143.49 Aligned_cols=180 Identities=10% Similarity=0.153 Sum_probs=116.4
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-cC-----------
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NF----------- 279 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-~~----------- 279 (490)
-.+|.+|++++|+++..+.+...+. +.| ..+. +||+||||||||++++++|+.+ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~----------~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD----------QPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT----------CTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh----------hCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 4578999999999888776655431 112 2234 9999999999999999999964 21
Q ss_pred -----------------cEEEEeccccC--ChHHHHHHHHhc----------------cCCeEEEEeccchhhhhhhhHh
Q 011254 280 -----------------DVYDLELTNLR--GNMELRNLLIAT----------------ENKSILVVEDIDCSIELQDRFA 324 (490)
Q Consensus 280 -----------------~~~~l~~s~~~--~~~~l~~l~~~~----------------~~~sIl~iDdiD~l~~~~~r~~ 324 (490)
+++.++.+... ....+++.+... .++.||+|||+|.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 12333333221 111345544432 256799999999751
Q ss_pred hhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHH
Q 011254 325 KAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCG 404 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~ 404 (490)
....+.|+..++... .+..+|++||.++.+.+++.+ |+ ..++|+.|+.++
T Consensus 148 -----------------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~ 197 (354)
T 1sxj_E 148 -----------------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSE 197 (354)
T ss_dssp -----------------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHH
T ss_pred -----------------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHH
Confidence 122345666666542 247889999999999999998 87 789999999999
Q ss_pred HHHHHHHhhCCCCCCch-H-HHHHhhhccCCCHHHHHH
Q 011254 405 FKMLASSYLGITEHPLF-L-EVEGLIEKAKVTPADVAE 440 (490)
Q Consensus 405 r~~L~~~~l~~~~~~l~-~-~i~~l~~~~~~tpa~i~~ 440 (490)
...+++..+...+..+. + .+..++...+-.+.++.+
T Consensus 198 ~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 198 ISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp HHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHH
Confidence 99999887754433332 2 233444333334444333
No 69
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=5.1e-14 Score=142.70 Aligned_cols=159 Identities=20% Similarity=0.317 Sum_probs=114.5
Q ss_pred cceecccCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc-----Cc
Q 011254 206 VWQSVNLDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 280 (490)
Q Consensus 206 ~w~~~~~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~-----~~ 280 (490)
.|.. -..|.+|++++|++.+++.|...+. . | ..+. +|||||||||||++++++|+.+. ..
T Consensus 14 ~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 14 PWVE--KYRPETLDEVYGQNEVITTVRKFVD----E-------G-KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHHHH----T-------T-CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred chHH--HhCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 4543 3578999999999888777665543 1 2 2223 99999999999999999999874 34
Q ss_pred EEEEeccccCChHHHHHHHHhc--------cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 281 VYDLELTNLRGNMELRNLLIAT--------ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 281 ~~~l~~s~~~~~~~l~~l~~~~--------~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
+..++.++..+...+++.+... ..+.|++|||+|.+.. ...+
T Consensus 79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------------------------~~~~ 128 (340)
T 1sxj_C 79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------------------------AAQN 128 (340)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------------------------HHHH
T ss_pred EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------------------------HHHH
Confidence 6777776654555555544322 1368999999997732 1234
Q ss_pred HHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 353 GMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 353 ~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
.|+..++... ....+|++||.+..+.+++.+ |+. .++|+.++.++....+...+...
T Consensus 129 ~L~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 129 ALRRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp HHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHc
Confidence 5667776542 346788899999999999998 875 78999999998888887776433
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=2e-13 Score=152.80 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=112.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEEE
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 283 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~~ 283 (490)
.|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 46689999999888887766543 2346789999999999999999999987 667888
Q ss_pred EeccccCC--------hHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHH
Q 011254 284 LELTNLRG--------NMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSG 353 (490)
Q Consensus 284 l~~s~~~~--------~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 353 (490)
++++.+.. ...++.++..+. .++||||||+|.+.+... .......
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~----------------------~~~~~~~--- 302 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA----------------------ASGGQVD--- 302 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCC----------------------SSSCHHH---
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCC----------------------CCcchHH---
Confidence 77765521 356777777765 479999999999864111 0000111
Q ss_pred HHHHhcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 354 MLNFIDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 354 LL~~idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+.+.+..+... .++.+|++||.++ .+|++|.| ||+ .|.|+.|+.+++..+++.++.
T Consensus 303 ~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 303 AANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 22233332222 3478888888643 57899999 998 699999999999998886653
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=3.4e-13 Score=137.83 Aligned_cols=162 Identities=16% Similarity=0.060 Sum_probs=115.2
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEecccc
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTNL 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~ 289 (490)
+...+++++|.++..+.|...+...+... .+..+.++|+||||||||++++++++.+ +..++.+++...
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 33445889999999998888777554321 1112379999999999999999999998 678888887654
Q ss_pred CChH----------------------H----HHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhccccccccccccccc
Q 011254 290 RGNM----------------------E----LRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNL 343 (490)
Q Consensus 290 ~~~~----------------------~----l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~ 343 (490)
.+.. . +...+.....+.||+|||+|.+-
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------------------- 138 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------------------- 138 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------------------
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------------------
Confidence 3211 1 11222223458899999999761
Q ss_pred CCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhC
Q 011254 344 NQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK---DRLDPAFLRPGRMDV-HIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 344 ~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~---~~LD~aLlRpGR~d~-~I~~~~p~~~~r~~L~~~~l~ 414 (490)
...+..|+..++.........+.||++||.+ +.+++.+.+ |+.. .|+|+.++.++...++...+.
T Consensus 139 ----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 139 ----PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp ----HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 2345566676655432101247889999988 678888887 8775 899999999999999987764
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=2e-13 Score=152.85 Aligned_cols=147 Identities=17% Similarity=0.185 Sum_probs=107.2
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----------cCcEE
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 282 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----------~~~~~ 282 (490)
..|..|+.++|.++..+.++..+. ...+.++|||||||||||++|+++|+.+ +..++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 356789999999999888876654 2345689999999999999999999997 88888
Q ss_pred EEecccc---CChHHHHHHHHhcc--CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 283 DLELTNL---RGNMELRNLLIATE--NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 283 ~l~~s~~---~~~~~l~~l~~~~~--~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
.+++..- .....++.+|..+. .++||||| .. . ...+.|+..
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~--------------------------~---~~~~~L~~~ 286 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA--------------------------I---DASNILKPS 286 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C-------------------------------------CCC
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc--------------------------h---hHHHHHHHH
Confidence 8887221 12336777777654 68999999 10 0 011223333
Q ss_pred hcccccCCCCcEEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 358 IDGLWSSCGDERIIIFTTNHKD-----RLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 358 idgl~s~~~~~~iiI~TTN~~~-----~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
++ ..++.+|+|||..+ .+||+|.| ||. .|+|+.|+.+++..|++.++..
T Consensus 287 l~------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 287 LA------RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp TT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred Hh------cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 33 13588999999988 79999999 995 5999999999999999977765
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.48 E-value=1.6e-13 Score=133.92 Aligned_cols=154 Identities=12% Similarity=0.162 Sum_probs=98.9
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEeccccCCh
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTNLRGN 292 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~ 292 (490)
.+|++++|.....+.+.+.+..... .+.++||+||||||||++|+++++.+. .+++.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 4799999999988888877764422 246899999999999999999999885 6899999988732
Q ss_pred HHHHH-HHH-----------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHH
Q 011254 293 MELRN-LLI-----------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGM 354 (490)
Q Consensus 293 ~~l~~-l~~-----------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 354 (490)
..+.. +|. ....+++|||||||.+.. .....|
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------------------~~q~~L 120 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------MVQEKL 120 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------------------HHHHHH
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------------------HHHHHH
Confidence 22222 221 112468999999998732 123345
Q ss_pred HHHhcccc-cC------CCCcEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhh
Q 011254 355 LNFIDGLW-SS------CGDERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCTS--CGFKMLASSYL 413 (490)
Q Consensus 355 L~~idgl~-s~------~~~~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~~--~~r~~L~~~~l 413 (490)
+..++.-. .. ....+.||+|||.. ..++++|.. ||+ ..|++|..+. +....|++.++
T Consensus 121 l~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 121 LRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp HHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred HHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 55555210 00 01236788999974 357888888 886 4677766654 55666666665
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=1.5e-12 Score=131.82 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=97.9
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc------------------------CcEEEEecc---ccCChHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELT---NLRGNMELRNLLIATE 303 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~------------------------~~~~~l~~s---~~~~~~~l~~l~~~~~ 303 (490)
..+.+||||||||||||++|+++|+.+. .+++.++.. .-.+.+.++.++....
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999999999874 345666653 2234566777776653
Q ss_pred ------CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCC
Q 011254 304 ------NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNH 377 (490)
Q Consensus 304 ------~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~ 377 (490)
.+.|++|||+|.+.. ...+.||..++.. ....++|++||.
T Consensus 102 ~~~~~~~~kvviIdead~l~~------------------------------~a~naLLk~lEep----~~~~~~Il~t~~ 147 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTD------------------------------AAANALLKTLEEP----PAETWFFLATRE 147 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCH------------------------------HHHHHHHHHHTSC----CTTEEEEEEESC
T ss_pred hccccCCcEEEEECchhhcCH------------------------------HHHHHHHHHhcCC----CCCeEEEEEeCC
Confidence 468999999998731 2346788888753 345889999999
Q ss_pred CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011254 378 KDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYL 413 (490)
Q Consensus 378 ~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l 413 (490)
++.+.|++++ |+ ..++|+.|+.++...++....
T Consensus 148 ~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 148 PERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred hHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence 9999999998 76 479999999999988888765
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1.8e-12 Score=146.89 Aligned_cols=155 Identities=20% Similarity=0.335 Sum_probs=111.0
Q ss_pred cccccChhHHHHHHHHHHHHHHcHHHHHHhCCC----CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC
Q 011254 219 DTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG 291 (490)
Q Consensus 219 ~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~ 291 (490)
+.|+|.++.++.+...+.... .|.. +...+||+||||||||++|++||+.+ +.+++.++++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 567888888777777665332 1211 12469999999999999999999999 88999999987643
Q ss_pred hH-------------------HHHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHH
Q 011254 292 NM-------------------ELRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLS 352 (490)
Q Consensus 292 ~~-------------------~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 352 (490)
.. .+...+.. ..++||||||||.+- ...++
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~------------------------------~~~~~ 678 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH------------------------------PDVFN 678 (854)
T ss_dssp SGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGSC------------------------------HHHHH
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC------------------------------HHHHH
Confidence 21 12222222 346899999998762 23567
Q ss_pred HHHHHhcccc--cCCC-----CcEEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCC
Q 011254 353 GMLNFIDGLW--SSCG-----DERIIIFTTNH--------------------------KDRLDPAFLRPGRMDVHIHMSY 399 (490)
Q Consensus 353 ~LL~~idgl~--s~~~-----~~~iiI~TTN~--------------------------~~~LD~aLlRpGR~d~~I~~~~ 399 (490)
.||..||.-. ...+ .+.+||+|||. ...+.|+|+. |+|..+.|..
T Consensus 679 ~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~p 756 (854)
T 1qvr_A 679 ILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRP 756 (854)
T ss_dssp HHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCC
T ss_pred HHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCC
Confidence 7888887321 1111 35789999997 2356777777 9999999999
Q ss_pred CCHHHHHHHHHHhhC
Q 011254 400 CTSCGFKMLASSYLG 414 (490)
Q Consensus 400 p~~~~r~~L~~~~l~ 414 (490)
|+.+++..|+..++.
T Consensus 757 l~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 757 LTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998874
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=5.6e-14 Score=152.98 Aligned_cols=129 Identities=21% Similarity=0.259 Sum_probs=87.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec----cccCC---hHH------HHHHHHhccCCeEEEEeccchhhhhhh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL----TNLRG---NME------LRNLLIATENKSILVVEDIDCSIELQD 321 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~----s~~~~---~~~------l~~l~~~~~~~sIl~iDdiD~l~~~~~ 321 (490)
++||+||||||||+||+++|+.++..++.... ..+.. ... +..-......++||||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~--- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD--- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH---
Confidence 69999999999999999999999877665321 22100 000 000001112568999999997721
Q ss_pred hHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc---------cccCCCCcEEEEEecCCCC-------------
Q 011254 322 RFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG---------LWSSCGDERIIIFTTNHKD------------- 379 (490)
Q Consensus 322 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg---------l~s~~~~~~iiI~TTN~~~------------- 379 (490)
...+.|+..|+. ..........||+|||.+.
T Consensus 406 ---------------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni 458 (595)
T 3f9v_A 406 ---------------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNI 458 (595)
T ss_dssp ---------------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTT
T ss_pred ---------------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhcc
Confidence 234556666652 1111123478999999987
Q ss_pred CCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhCCC
Q 011254 380 RLDPAFLRPGRMDV-HIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 380 ~LD~aLlRpGR~d~-~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
.|+++|++ |||. .+..++|+.+ ...|+++.+...
T Consensus 459 ~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 459 NLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred CCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 89999999 9985 5566888888 888888888653
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=2e-12 Score=114.84 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=64.6
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHH
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELR 296 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~ 296 (490)
.++|.....+.+.+.+.... ..+..+||+||||||||++|+++++.. +.+++ ++++.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 46677777777777666432 234579999999999999999999987 78899 9999886655555
Q ss_pred HHHHhccCCeEEEEeccchhh
Q 011254 297 NLLIATENKSILVVEDIDCSI 317 (490)
Q Consensus 297 ~l~~~~~~~sIl~iDdiD~l~ 317 (490)
.++..+ .+++|||||||.+.
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~ 89 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLT 89 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSC
T ss_pred cHHHHc-CCcEEEEcChHHCC
Confidence 556554 56799999999873
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=4.4e-12 Score=126.94 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=97.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc------cCcEEEEeccc-cCChHHHHHHHHhcc------CCeEEEEeccchhhhh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELTN-LRGNMELRNLLIATE------NKSILVVEDIDCSIEL 319 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l------~~~~~~l~~s~-~~~~~~l~~l~~~~~------~~sIl~iDdiD~l~~~ 319 (490)
...||||||||||||++|+++|+.+ ..+++.++.++ -.+-+.++.++..+. +..|++|||+|.+-.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 3589999999999999999999874 45888888764 345567788776653 357999999998731
Q ss_pred hhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011254 320 QDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSY 399 (490)
Q Consensus 320 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~ 399 (490)
...+.||..|+.. +...++|++||.+.+|.|+++. | .++|+.
T Consensus 97 -----------------------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~ 138 (305)
T 2gno_A 97 -----------------------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVV 138 (305)
T ss_dssp -----------------------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEEC
T ss_pred -----------------------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCC
Confidence 2346688888853 3458888889999999999999 7 789999
Q ss_pred CCHHHHHHHHHHhhC
Q 011254 400 CTSCGFKMLASSYLG 414 (490)
Q Consensus 400 p~~~~r~~L~~~~l~ 414 (490)
|+.++....+...++
T Consensus 139 l~~~~i~~~L~~~~~ 153 (305)
T 2gno_A 139 NVPKEFRDLVKEKIG 153 (305)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC
Confidence 999998888877763
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.32 E-value=5.3e-12 Score=134.35 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=92.9
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC--cEEEEeccccCChHHH--
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTNLRGNMEL-- 295 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~~~~~~~l-- 295 (490)
.++|.+++++.+...+. .+.++||+||||||||++|+++|+.++. ++..+.+.. .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46677777766654432 1357999999999999999999999854 344443321 111111
Q ss_pred ---------HHHHHhcc-----CCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc--
Q 011254 296 ---------RNLLIATE-----NKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-- 359 (490)
Q Consensus 296 ---------~~l~~~~~-----~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-- 359 (490)
...+.... .++|||||||+.+. ..+.+.||..|+
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~------------------------------~~~q~~LL~~lee~ 136 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG------------------------------PAILNTLLTAINER 136 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC------------------------------HHHHHHHHHHHHSS
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc------------------------------HHHHHHHHHHHHHH
Confidence 11122111 45699999998652 234566777775
Q ss_pred -----ccccCCCCcEEEEEecCCCCC---CCccccCCCceeeEEEeCCCCH-HHHHHHHHHhhC
Q 011254 360 -----GLWSSCGDERIIIFTTNHKDR---LDPAFLRPGRMDVHIHMSYCTS-CGFKMLASSYLG 414 (490)
Q Consensus 360 -----gl~s~~~~~~iiI~TTN~~~~---LD~aLlRpGR~d~~I~~~~p~~-~~r~~L~~~~l~ 414 (490)
|..... ..+++|+|||.+.. +.+++++ ||..+|++++|+. +++..|++....
T Consensus 137 ~v~i~G~~~~~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 137 QFRNGAHVEKI-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EEECSSSEEEC-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hccCCCCcCCc-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 221111 22467888886322 4459999 9999999999997 678888886553
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=1.7e-12 Score=119.17 Aligned_cols=97 Identities=22% Similarity=0.299 Sum_probs=66.8
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEecccc
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTNL 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~~ 289 (490)
.+.+|++++......+.+.+.+..+.. .+..+.+++++|+||||||||+|++++|+.+ |..++.++..++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVH------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHH------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHH------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 457899998865555566666665543 3344456889999999999999999999987 666766766554
Q ss_pred CCh-------HHHHHHHHhccCCeEEEEeccchh
Q 011254 290 RGN-------MELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 290 ~~~-------~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
... .....++....++.+|+|||++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 110 001133444457899999999853
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.29 E-value=8e-12 Score=153.70 Aligned_cols=137 Identities=20% Similarity=0.372 Sum_probs=99.1
Q ss_pred CcceeeeCCCCCcHHHHH-HHHHHhccCcEEEEeccccCChHHHHHHHHhc-----------------cCCeEEEEeccc
Q 011254 253 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELTNLRGNMELRNLLIAT-----------------ENKSILVVEDID 314 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la-~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~-----------------~~~sIl~iDdiD 314 (490)
++++||+||||||||++| +++++..++.++.++++...+...+.+.+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 479999999999999999 66666668899999999888888887777642 124799999998
Q ss_pred hhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCC------CcEEEEEecCCCC-----CCCc
Q 011254 315 CSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCG------DERIIIFTTNHKD-----RLDP 383 (490)
Q Consensus 315 ~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~------~~~iiI~TTN~~~-----~LD~ 383 (490)
.... ++.+ .......+.+++ ...|++.... .++.+|+|||+++ .|||
T Consensus 1347 mp~~--d~yg-------------------~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~ 1404 (2695)
T 4akg_A 1347 LPKL--DKYG-------------------SQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSE 1404 (2695)
T ss_dssp CSCC--CSSS-------------------CCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCH
T ss_pred cccc--cccC-------------------chhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCCh
Confidence 5321 1000 111122333333 2235544321 2478999999995 7999
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 384 AFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 384 aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
+|+| || ..|+++.|+.+++..|+..++.
T Consensus 1405 rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1405 RFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred hhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999 99 7799999999999999987774
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.29 E-value=1.1e-11 Score=123.96 Aligned_cols=152 Identities=17% Similarity=0.213 Sum_probs=98.2
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHH
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELR 296 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~ 296 (490)
+++|.....+.+.+.+.... ..+.++||+||||||||++|++|++.. +.+++.++|+.+....--.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46777777777777666432 235689999999999999999999965 6789999998863221111
Q ss_pred HHHH-----------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc
Q 011254 297 NLLI-----------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID 359 (490)
Q Consensus 297 ~l~~-----------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id 359 (490)
.+|. ....+++|||||||.+.. .....||..++
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~------------------------------~~q~~Ll~~l~ 121 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------------------------LMQVRLLRAIQ 121 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH------------------------------HHHHHHHHHHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH------------------------------HHHHHHHHHHh
Confidence 2221 112457999999998732 12344666665
Q ss_pred ccc-------cCCCCcEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHhhC
Q 011254 360 GLW-------SSCGDERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCT--SCGFKMLASSYLG 414 (490)
Q Consensus 360 gl~-------s~~~~~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~--~~~r~~L~~~~l~ 414 (490)
... ......+.||+|||.. ..++++|.. ||. ..|++|... .++...|+..|+.
T Consensus 122 ~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 122 EREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp SSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred cCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 321 0011246788999975 345667776 774 446666665 3555667776653
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.28 E-value=2.6e-12 Score=113.94 Aligned_cols=84 Identities=15% Similarity=0.040 Sum_probs=61.6
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHH
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLL 299 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~ 299 (490)
+++|..+..+.+.+.+..+.. .+..+||+||||||||++|+++++..+ +++.++++.+... ....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHH
Confidence 366777777888777765432 246799999999999999999999988 8999988875321 134444
Q ss_pred HhccCCeEEEEeccchhh
Q 011254 300 IATENKSILVVEDIDCSI 317 (490)
Q Consensus 300 ~~~~~~sIl~iDdiD~l~ 317 (490)
..+ .+++|||||||.+.
T Consensus 72 ~~a-~~~~l~lDei~~l~ 88 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQYS 88 (143)
T ss_dssp HHT-TTSEEEEEECTTCC
T ss_pred HhC-CCCeEEEeChHHCC
Confidence 443 56899999999873
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.24 E-value=7.9e-11 Score=121.26 Aligned_cols=167 Identities=10% Similarity=0.117 Sum_probs=106.2
Q ss_pred CCCccccccChhHHHHHHHHH-HHHHHcHHHHHHhCCCCCcceee--eCCCCCcHHHHHHHHHHhc---------cCcEE
Q 011254 215 PATFDTLAMDSDMKQMIMDDL-ERFVKRKEFYRNVGKAWKRGYLL--YGPPGTGKSSLIAAMANYL---------NFDVY 282 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l-~~~l~~~~~y~~~g~~~~rg~LL--~GPpGtGKT~la~aiA~~l---------~~~~~ 282 (490)
....+.++|.++..+.|.+.+ ....... ...++.++| +||||||||+|++++++.+ +..++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 334578899988888887776 5332210 023457899 9999999999999999887 45677
Q ss_pred EEeccccCCh----------------------HH----HHHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccc
Q 011254 283 DLELTNLRGN----------------------ME----LRNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNV 336 (490)
Q Consensus 283 ~l~~s~~~~~----------------------~~----l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~ 336 (490)
.+++....+. .. +...+.....+.||+|||+|.+...
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~----------------- 153 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS----------------- 153 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC-----------------
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc-----------------
Confidence 7776432111 11 2222222245889999999987420
Q ss_pred cccccccCCchhhHHHHHHHHhcccccCC-CCcEEEEEecCCCC---CCC---ccccCCCceeeEEEeCCCCHHHHHHHH
Q 011254 337 IQPVMNLNQVPQVTLSGMLNFIDGLWSSC-GDERIIIFTTNHKD---RLD---PAFLRPGRMDVHIHMSYCTSCGFKMLA 409 (490)
Q Consensus 337 ~~~~~~~~~~~~~~ls~LL~~idgl~s~~-~~~~iiI~TTN~~~---~LD---~aLlRpGR~d~~I~~~~p~~~~r~~L~ 409 (490)
.......+..|+..++...... ...+.||+|||.++ .++ +.+.+ |+...|+++.++.++..+++
T Consensus 154 -------~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll 224 (412)
T 1w5s_A 154 -------PRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTIL 224 (412)
T ss_dssp -------TTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHH
T ss_pred -------cCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHH
Confidence 0011234455555554432100 14578888888665 344 66666 55556999999999999998
Q ss_pred HHhhC
Q 011254 410 SSYLG 414 (490)
Q Consensus 410 ~~~l~ 414 (490)
...+.
T Consensus 225 ~~~~~ 229 (412)
T 1w5s_A 225 EQRAE 229 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.17 E-value=5.4e-11 Score=110.88 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=65.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCC-CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL 289 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~-~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~ 289 (490)
.+.+|+++++.....+.+.+.+..++... +.. .+++++|+||||||||+|++++++.+ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35689999887655555656665554421 111 12789999999999999999999988 677877776653
Q ss_pred CC-------hHHHHHHHHhccCCeEEEEeccchh
Q 011254 290 RG-------NMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 290 ~~-------~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
.. ...+..++.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 0112233333445679999999764
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.15 E-value=1.9e-11 Score=125.67 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=87.8
Q ss_pred hCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchhhhhhhhHhhhh
Q 011254 248 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCSIELQDRFAKAK 327 (490)
Q Consensus 248 ~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~ 327 (490)
++++.++.++|+||||||||||++++|+.++..++.++... ......+....+..++++||++.......+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~--- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLP--- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---
Confidence 47888889999999999999999999999887766543322 12222344556778899999998753110000
Q ss_pred hcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011254 328 ATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSY 399 (490)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~ 399 (490)
......+++.+.+.+||. +.|+++|||++.+ ++++||||++..++..+
T Consensus 237 ----------------~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 ----------------SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ----------------CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred ----------------ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 001112457788888884 4578899999999 89999999999888866
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.04 E-value=2.2e-10 Score=114.64 Aligned_cols=96 Identities=25% Similarity=0.400 Sum_probs=62.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc----CcEEEEeccccC
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELTNLR 290 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~s~~~ 290 (490)
+.+|+++.+....+..+...+..|+.. .+...+.+++||||||||||+|++|+|+++. .+++.+.+.++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 478999987654445555555555442 2222368999999999999999999999765 777777765431
Q ss_pred -------ChHHHHHHHHhccCCeEEEEeccchh
Q 011254 291 -------GNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 291 -------~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
....+..++....+..+|+|||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11112222333345679999999754
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.02 E-value=2.9e-10 Score=134.77 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=92.7
Q ss_pred CCccccccChhHHHHHHHHHHHHHHc----------HHHHHH------hCCC----------CCcc--eeeeCCCCCcHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKR----------KEFYRN------VGKA----------WKRG--YLLYGPPGTGKS 267 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~----------~~~y~~------~g~~----------~~rg--~LL~GPpGtGKT 267 (490)
.+|+++.+..+.|+.+.+.+.+++.+ ++.|+. .|.. +|+| +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999999854 445555 2222 4555 999999999999
Q ss_pred HHHHHHHHhccCc---EEEEeccc----------------c--C----ChHHHHHHHHhc--cCCeEEEEeccchhhhhh
Q 011254 268 SLIAAMANYLNFD---VYDLELTN----------------L--R----GNMELRNLLIAT--ENKSILVVEDIDCSIELQ 320 (490)
Q Consensus 268 ~la~aiA~~l~~~---~~~l~~s~----------------~--~----~~~~l~~l~~~~--~~~sIl~iDdiD~l~~~~ 320 (490)
+||+++|.+...+ ...++... + . ++..|+.++..+ ..+++|++|++|++++.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999877433 33332222 1 1 345676666533 369999999999998643
Q ss_pred hhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
...+... + .+.....+.++++|..||++....+ ++|| +||+.
T Consensus 1177 ~~~g~~~--~-----------~~~~~~~r~~~q~l~~~~~~~~~~~--v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIG--D-----------SHMGLAARMMSQAMRKLAGNLKQSN--TLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTT--C-----------CCTTHHHHHHHHHHHHHHHHHHHTT--CEEE-EEECE
T ss_pred ccccccc--c-----------ccccHHHHHHHHHHHHHHhhhccCC--eEEE-Eeccc
Confidence 3111000 0 0012334578999999999866433 5555 88875
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.01 E-value=5.4e-10 Score=104.62 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=42.9
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
+.|.++++|||||||||||++|.|+|+.++..++...-+. +. -.+....+..||+|||+|..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~----f~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH----FWLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC----GGGGGGTTCSSEEEEEECHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch----hhhcccCCCCEEEEECCCch
Confidence 4677788999999999999999999999876554321111 10 01222334569999999843
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.98 E-value=2.2e-09 Score=117.12 Aligned_cols=52 Identities=35% Similarity=0.354 Sum_probs=42.0
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
-.|.+|++++|...+++.+...+. ....++|+||||||||+|+++||+.+..
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 457889999999888776654443 1257999999999999999999998853
No 91
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.88 E-value=1.2e-09 Score=109.17 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=67.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCc--EEEEeccc----cC-C-hHHHHHHHHhccCCeEEEEeccchhhhhh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELTN----LR-G-NMELRNLLIATENKSILVVEDIDCSIELQ 320 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~s~----~~-~-~~~l~~l~~~~~~~sIl~iDdiD~l~~~~ 320 (490)
|.+.++.+||+||||||||+|+.++|...|.. ++.+...+ .. + +..+..+.....+..+||||+++.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 45556668999999999999999999876655 44441111 11 1 22233333333322299999999885311
Q ss_pred hhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccc
Q 011254 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAF 385 (490)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aL 385 (490)
.. ... .......+.++|..++++.... ++.+|++|| +...|+++
T Consensus 199 ~~--~s~----------------~G~v~~~lrqlL~~L~~~~k~~--gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GG--NTT----------------SGGISRGAFDLLSDIGAMAASR--GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHH--TCEEEEECC-CSSCSSSH
T ss_pred cc--ccc----------------cchHHHHHHHHHHHHHHHHhhC--CCEEEEEeC-CcccchhH
Confidence 10 000 1112345667777776664432 367888888 66677765
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=5.4e-08 Score=97.48 Aligned_cols=176 Identities=17% Similarity=0.127 Sum_probs=103.0
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc-----
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL----- 289 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~----- 289 (490)
+...+.++|-++..+.|.+ +. . +.++++||+|+|||+|++.+++.++.+++.+++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 3455677887766666654 32 1 478999999999999999999998777777776532
Q ss_pred CCh-----------------------------------------------HHHHHHH---Hhcc-CCeEEEEeccchhhh
Q 011254 290 RGN-----------------------------------------------MELRNLL---IATE-NKSILVVEDIDCSIE 318 (490)
Q Consensus 290 ~~~-----------------------------------------------~~l~~l~---~~~~-~~sIl~iDdiD~l~~ 318 (490)
.+. ..+..++ .... +|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 010 1122222 2222 388999999998732
Q ss_pred hhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCC---------CCccccCCC
Q 011254 319 LQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDR---------LDPAFLRPG 389 (490)
Q Consensus 319 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~---------LD~aLlRpG 389 (490)
. .....+..|-..++.. .++.+|+|+..... ....+ .|
T Consensus 152 ~--------------------------~~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~ 198 (357)
T 2fna_A 152 L--------------------------RGVNLLPALAYAYDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FG 198 (357)
T ss_dssp C--------------------------TTCCCHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TT
T ss_pred c--------------------------CchhHHHHHHHHHHcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--cc
Confidence 0 0011122222222321 13566666664321 11122 35
Q ss_pred ceeeEEEeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhccCCCHHHHHHH
Q 011254 390 RMDVHIHMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKAKVTPADVAEQ 441 (490)
Q Consensus 390 R~d~~I~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~~~tpa~i~~~ 441 (490)
|+..+|+++..+.++..+++...++..+.... +...+...++-.|.-+...
T Consensus 199 r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~~l~~~ 249 (357)
T 2fna_A 199 RAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPGWLTYF 249 (357)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHHHHHHH
T ss_pred CccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHHHHHHH
Confidence 77788999999999999998876632111111 1255555566666665443
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=6.1e-09 Score=92.98 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchh
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
....++|+||+|+|||+|++++++.+ |..++.++..++... ....++.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 34679999999999999999999988 777888887776443 11346889999999875
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.82 E-value=6.2e-07 Score=89.50 Aligned_cols=181 Identities=16% Similarity=0.084 Sum_probs=106.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccC---
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLR--- 290 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~--- 290 (490)
++..-+.++|-++..+.|.+.+.. | +.++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344556788888777777665431 2 5799999999999999999999876 5555543211
Q ss_pred ---Ch------------------------------------HHHHHH---HHhc---cCCeEEEEeccchhhhhhhhHhh
Q 011254 291 ---GN------------------------------------MELRNL---LIAT---ENKSILVVEDIDCSIELQDRFAK 325 (490)
Q Consensus 291 ---~~------------------------------------~~l~~l---~~~~---~~~sIl~iDdiD~l~~~~~r~~~ 325 (490)
+. ..+..+ +... .++.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 00 111222 2211 148999999999874200
Q ss_pred hhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC---------CCCccccCCCceeeEEE
Q 011254 326 AKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD---------RLDPAFLRPGRMDVHIH 396 (490)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~---------~LD~aLlRpGR~d~~I~ 396 (490)
.......+..|-..++.. ..+.+|+|+.... .....+ .||....|+
T Consensus 145 ------------------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~ 199 (350)
T 2qen_A 145 ------------------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVL 199 (350)
T ss_dssp ------------------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEE
T ss_pred ------------------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceee
Confidence 001112222233333332 1355666655421 111222 257777899
Q ss_pred eCCCCHHHHHHHHHHhhCCCCCCc-hHHHHHhhhccCCCHHHHHHH
Q 011254 397 MSYCTSCGFKMLASSYLGITEHPL-FLEVEGLIEKAKVTPADVAEQ 441 (490)
Q Consensus 397 ~~~p~~~~r~~L~~~~l~~~~~~l-~~~i~~l~~~~~~tpa~i~~~ 441 (490)
++..+.++..+++...+...+... .+.+..+...++-.|.-+...
T Consensus 200 l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~ 245 (350)
T 2qen_A 200 VKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVF 245 (350)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999887765433333 344556666666667655443
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.80 E-value=5.9e-09 Score=97.72 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=76.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh--------cc-CcEEEEeccccCC---------------------hHHHHHHHH-hc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY--------LN-FDVYDLELTNLRG---------------------NMELRNLLI-AT 302 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~--------l~-~~~~~l~~s~~~~---------------------~~~l~~l~~-~~ 302 (490)
-.+|++|+||||||++|.+++.. .| .++|..++.++.- ...+..++. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35799999999999999887543 34 6776665543310 122332221 12
Q ss_pred cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCC
Q 011254 303 ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLD 382 (490)
Q Consensus 303 ~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD 382 (490)
..++||+|||++.+++.+.. ... ...+|..+..- .....-||++|++++.||
T Consensus 86 ~~~~vliIDEAq~l~~~~~~---------------------~~e----~~rll~~l~~~---r~~~~~iil~tq~~~~l~ 137 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA---------------------GSK----IPENVQWLNTH---RHQGIDIFVLTQGPKLLD 137 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT---------------------TCC----CCHHHHGGGGT---TTTTCEEEEEESCGGGBC
T ss_pred cCceEEEEEChhhhccCccc---------------------cch----hHHHHHHHHhc---CcCCeEEEEECCCHHHHh
Confidence 34899999999988641100 000 01355555432 123467788889899999
Q ss_pred ccccCCCceeeEEEeCCCCHH
Q 011254 383 PAFLRPGRMDVHIHMSYCTSC 403 (490)
Q Consensus 383 ~aLlRpGR~d~~I~~~~p~~~ 403 (490)
.++.+ |++.+++++.+...
T Consensus 138 ~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 138 QNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp HHHHT--TEEEEEEEEECSSC
T ss_pred HHHHH--HhheEEEEcCcccC
Confidence 99887 99999999876543
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.76 E-value=1.6e-08 Score=124.84 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=95.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNA 331 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~ 331 (490)
..|.+++||||||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++++++||++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 468899999999999999999999999999999999888888999888765 589999999997632
Q ss_pred ccccccccccccCCchhhHHHHH----HHHh---------cccccCCCCcEEEEEecC----CCCCCCccccCCCceeeE
Q 011254 332 MDLNVIQPVMNLNQVPQVTLSGM----LNFI---------DGLWSSCGDERIIIFTTN----HKDRLDPAFLRPGRMDVH 394 (490)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ls~L----L~~i---------dgl~s~~~~~~iiI~TTN----~~~~LD~aLlRpGR~d~~ 394 (490)
..-..+++. ++.+ +|-.-.......|++|.| ....|+++|.+ || +.
T Consensus 712 --------------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~ 774 (2695)
T 4akg_A 712 --------------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-RE 774 (2695)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EE
T ss_pred --------------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EE
Confidence 001111111 2222 110000112345778888 34579999998 88 78
Q ss_pred EEeCCCCHHHHHHHHHHhhC
Q 011254 395 IHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 395 I~~~~p~~~~r~~L~~~~l~ 414 (490)
|.|.+|+.+...++.-.-.+
T Consensus 775 v~m~~Pd~~~i~ei~l~s~G 794 (2695)
T 4akg_A 775 FSMKSPQSGTIAEMILQIMG 794 (2695)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EEeeCCCHHHHHHHHHHhcC
Confidence 99999999988777543333
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.73 E-value=4.2e-08 Score=95.62 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhccCCeEEEEeccchh
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATENKSILVVEDIDCS 316 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~~~sIl~iDdiD~l 316 (490)
+++.+++||||||||||+++.|||+.++.- -.++.+.. .-.+.....+.|+++||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTNE------NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTCS------SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeecccc------ccccccccccEEEEeccccch
Confidence 556789999999999999999999986542 22232211 113444556778888887644
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.72 E-value=3.3e-08 Score=122.85 Aligned_cols=135 Identities=17% Similarity=0.373 Sum_probs=94.2
Q ss_pred CcceeeeCCCCCcHHHHHHH-HHHhccCcEEEEeccccCChHHHHHHHHhc------------------cCCeEEEEecc
Q 011254 253 KRGYLLYGPPGTGKSSLIAA-MANYLNFDVYDLELTNLRGNMELRNLLIAT------------------ENKSILVVEDI 313 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~a-iA~~l~~~~~~l~~s~~~~~~~l~~l~~~~------------------~~~sIl~iDdi 313 (490)
++.+||+||||||||++++. +++..+.+++.++++.-.+...+...+... .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 46799999999999987755 444557788999999988888888777630 12369999999
Q ss_pred chhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc--ccccCCC------CcEEEEEecCCCC-----C
Q 011254 314 DCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID--GLWSSCG------DERIIIFTTNHKD-----R 380 (490)
Q Consensus 314 D~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id--gl~s~~~------~~~iiI~TTN~~~-----~ 380 (490)
+.... + ....+..+.-|...+| |++.... .++.+|+|+|++. .
T Consensus 1384 Nmp~~--D----------------------~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~ 1439 (3245)
T 3vkg_A 1384 NLPST--D----------------------KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQ 1439 (3245)
T ss_dssp TCCCC--C----------------------TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCC
T ss_pred CCCCc--c----------------------ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCcc
Confidence 85311 1 0111223333444444 3333211 2467899999884 5
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011254 381 LDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLG 414 (490)
Q Consensus 381 LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~ 414 (490)
|+++|+| ||-. |++++|+.++...|+..++.
T Consensus 1440 l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1440 LTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 8999999 9954 99999999999999876653
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.49 E-value=1.7e-06 Score=88.48 Aligned_cols=152 Identities=15% Similarity=0.216 Sum_probs=92.1
Q ss_pred ccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhccCc--EEEEeccccCChHHHHH
Q 011254 220 TLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELTNLRGNMELRN 297 (490)
Q Consensus 220 ~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~--~~~l~~s~~~~~~~l~~ 297 (490)
.++|.......+...+.... +....+|++|++||||+.+|+++....+.. ++.++|+.+..+.--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666655555555443221 123469999999999999999999887544 99999998854433334
Q ss_pred HHH-----------------hccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcc
Q 011254 298 LLI-----------------ATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDG 360 (490)
Q Consensus 298 l~~-----------------~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idg 360 (490)
+|. ...++..||||||+.+-. .....||..++.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------------------~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ------------------------------RVQAKLLRVLET 248 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH------------------------------HHHHHHHHHHHH
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH------------------------------HHHHHHHHHHHh
Confidence 432 123457899999998732 223446666642
Q ss_pred -cccCCCC------cEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011254 361 -LWSSCGD------ERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCTS--CGFKMLASSYLG 414 (490)
Q Consensus 361 -l~s~~~~------~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~~--~~r~~L~~~~l~ 414 (490)
-...-|. .+-+|+|||.. ..+.+.|.. |+. ..|++|.... +....|+..|+.
T Consensus 249 ~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 249 GSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp SEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred CCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 1111111 24578888852 123333433 433 3577877766 566777777763
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.37 E-value=4.9e-06 Score=85.59 Aligned_cols=154 Identities=14% Similarity=0.202 Sum_probs=92.1
Q ss_pred ccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEeccccCChHH
Q 011254 218 FDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTNLRGNME 294 (490)
Q Consensus 218 f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~~~~~ 294 (490)
++.++|....-+.+.+.+.... +....+||+|++||||+++|+++..... .+++.++|+.+..+.-
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 3456666655555655554321 2245689999999999999999998764 6899999998743322
Q ss_pred HHHHHHh-----------------ccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHH
Q 011254 295 LRNLLIA-----------------TENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNF 357 (490)
Q Consensus 295 l~~l~~~-----------------~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 357 (490)
-..+|.. ...+++||||||+.+-. .....||..
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------------------~~q~~Ll~~ 254 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL------------------------------EAQAKLLRV 254 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH------------------------------HHHHHHHHH
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH------------------------------HHHHHHHHH
Confidence 2233321 12457999999998732 223345555
Q ss_pred hcc-ccc-CCC-----CcEEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011254 358 IDG-LWS-SCG-----DERIIIFTTNHK-------DRLDPAFLRPGRMD-VHIHMSYCTS--CGFKMLASSYLG 414 (490)
Q Consensus 358 idg-l~s-~~~-----~~~iiI~TTN~~-------~~LD~aLlRpGR~d-~~I~~~~p~~--~~r~~L~~~~l~ 414 (490)
++. -.. ..+ -++-||+|||.. ..+.+.|.- |+. ..|++|.... +....|+..|+.
T Consensus 255 l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 255 IESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp HHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 542 100 001 135688899862 233444443 442 4566665543 556667776663
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.36 E-value=2.7e-07 Score=96.38 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=80.2
Q ss_pred cccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHH-HHhccCcEEEEeccccCChHHHH---
Q 011254 221 LAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAM-ANYLNFDVYDLELTNLRGNMELR--- 296 (490)
Q Consensus 221 l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~ai-A~~l~~~~~~l~~s~~~~~~~l~--- 296 (490)
|.|++.+|+.|.-.+.. ..+. ..-.-.+||.|+||| ||+|++++ ++.+...+|...... +...|.
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcC--Cccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEEE
Confidence 67777777766544321 0000 001114999999999 99999999 777655555422111 111111
Q ss_pred ---------HHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhc-------c
Q 011254 297 ---------NLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFID-------G 360 (490)
Q Consensus 297 ---------~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~id-------g 360 (490)
.-........|+|||||+.+- ..+.+.|+..|+ |
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~------------------------------~~~qsaLlEaMEe~~VtI~G 333 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP------------------------------EPHRWALMEAMDKGTVTVDG 333 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC------------------------------HHHHHHHHHHHHHSEEEETT
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC------------------------------HHHHHHHHHHHhCCcEEECC
Confidence 000112357899999998762 234455565554 2
Q ss_pred cccCCCCcEEEEEecCCCC-----------CCCccccCCCceeeEEE-eCCCCHHH
Q 011254 361 LWSSCGDERIIIFTTNHKD-----------RLDPAFLRPGRMDVHIH-MSYCTSCG 404 (490)
Q Consensus 361 l~s~~~~~~iiI~TTN~~~-----------~LD~aLlRpGR~d~~I~-~~~p~~~~ 404 (490)
. .-.....||+|+|..+ .|+++++. |||..+. +++|+.+.
T Consensus 334 ~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 334 I--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp E--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred E--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 2 1123478999999876 78899999 9998654 47776544
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=2.3e-06 Score=106.73 Aligned_cols=131 Identities=17% Similarity=0.102 Sum_probs=95.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhcc-CCeEEEEeccchhhhhhhhHhhhhhccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIATE-NKSILVVEDIDCSIELQDRFAKAKATNA 331 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~~-~~sIl~iDdiD~l~~~~~r~~~~~~~~~ 331 (490)
..|..++||+|||||.+++.+|+.+|..++.++|++-.+...+.++|..+. .++..++||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~------------- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE------------- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH-------------
Confidence 356789999999999999999999999999999998877788888888765 689999999987621
Q ss_pred ccccccccccccCCchhhHHHHHHHHh----------------c-ccccCCCCcEEEEEecCC----CCCCCccccCCCc
Q 011254 332 MDLNVIQPVMNLNQVPQVTLSGMLNFI----------------D-GLWSSCGDERIIIFTTNH----KDRLDPAFLRPGR 390 (490)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~ls~LL~~i----------------d-gl~s~~~~~~iiI~TTN~----~~~LD~aLlRpGR 390 (490)
.++|.+...+ + |-.-.-....-|++|.|. ...|+++|.. |
T Consensus 671 -----------------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--l 731 (3245)
T 3vkg_A 671 -----------------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--L 731 (3245)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--T
T ss_pred -----------------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--h
Confidence 1111111111 1 210000123457788883 4589999998 8
Q ss_pred eeeEEEeCCCCHHHHHHHHHHhhCCC
Q 011254 391 MDVHIHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 391 ~d~~I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
| +.|.|+.|+.+...++.-.-.|..
T Consensus 732 F-r~v~m~~Pd~~~i~ei~L~s~Gf~ 756 (3245)
T 3vkg_A 732 F-RSMAMIKPDREMIAQVMLYSQGFK 756 (3245)
T ss_dssp E-EEEECCSCCHHHHHHHHHHTTTCS
T ss_pred c-EEEEEeCCCHHHHHHHHHHHcccc
Confidence 8 779999999999888766544443
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.27 E-value=1.3e-06 Score=105.16 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=70.1
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc---------------------CChHHHHHHHHhc---
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL---------------------RGNMELRNLLIAT--- 302 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~---------------------~~~~~l~~l~~~~--- 302 (490)
++.+++++||||||||||+||.++|.+. |..+..++.... ....++.+.+...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 6778889999999999999999998775 444555544321 1122333333322
Q ss_pred cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCC
Q 011254 303 ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHK 378 (490)
Q Consensus 303 ~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~ 378 (490)
.++++||||+++.+.+.....+. .. + .........++++|..|++.....+ ++|++||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~-~~----~--------~~~~~~~R~lsqlL~~L~~~~~~~~---v~VI~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGE-IG----D--------SHMGLAARMMSQAMRKLAGNLKQSN---TLLIFINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSC-TT----C--------CCTTHHHHHHHHHHHHHHHHHHTTT---CEEEEEECE
T ss_pred CCCCEEEEcChhHhccccccccc-cc----c--------cccchHHHHHHHHHHHHHHHHHhCC---cEEEEEccc
Confidence 57999999999988753221110 00 0 0011135577889999988876533 455566643
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.17 E-value=5.1e-06 Score=76.08 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=23.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
+.|.||+|+|||||++.|++.++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 67899999999999999999986544
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.07 E-value=2.5e-05 Score=78.49 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=82.1
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc---cC-cEEEEeccccCChHHHHHHHHhc------cCCeEEEEeccch-hhhhh
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NF-DVYDLELTNLRGNMELRNLLIAT------ENKSILVVEDIDC-SIELQ 320 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~-~~~~l~~s~~~~~~~l~~l~~~~------~~~sIl~iDdiD~-l~~~~ 320 (490)
....||||||+|+||++.++++++.+ ++ +...+... ++.++++++..+ ..+-|++|||+|. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 45689999999999999999999876 32 22222222 234455555443 2577999999986 41
Q ss_pred hhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCC------CCCccccCCCceeeE
Q 011254 321 DRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKD------RLDPAFLRPGRMDVH 394 (490)
Q Consensus 321 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~------~LD~aLlRpGR~d~~ 394 (490)
+...+.|+..++... ...++|++|+.++ .+-+++.. |. ..
T Consensus 91 ---------------------------~~~~~aLl~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~ 136 (343)
T 1jr3_D 91 ---------------------------AAINEQLLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQ 136 (343)
T ss_dssp ---------------------------TTHHHHHHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EE
T ss_pred ---------------------------hHHHHHHHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eE
Confidence 223456778777542 3366666665543 35566666 44 57
Q ss_pred EEeCCCCHHHHHHHHHHhhCCC
Q 011254 395 IHMSYCTSCGFKMLASSYLGIT 416 (490)
Q Consensus 395 I~~~~p~~~~r~~L~~~~l~~~ 416 (490)
+++..++..+....++..+...
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 137 VTCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp EEECCCCTTHHHHHHHHHHHHT
T ss_pred EEeeCCCHHHHHHHHHHHHHHc
Confidence 8999999888887777766443
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.90 E-value=4.9e-05 Score=70.68 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~ 288 (490)
|.+...-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555566899999999999999999985566676666543
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.83 E-value=0.00036 Score=75.08 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=36.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
|.....++|-+...+.|.+.+.. +....+-++++||+|+|||+||+.+++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 34455678888777777665431 0122456899999999999999999753
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.69 E-value=0.00014 Score=67.94 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
|.+....++|+||||+|||+|++.+|..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555568999999999999999999654
No 109
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=0.00018 Score=67.83 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh--c-------cCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY--L-------NFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~--l-------~~~~~~l~~s~ 288 (490)
|++...-++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4555566899999999999999999984 3 44566665443
No 110
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.67 E-value=0.0011 Score=77.04 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=95.0
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc-------cCcEEEEec
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLEL 286 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l-------~~~~~~l~~ 286 (490)
.|.....++|-++..++|.+.+... ..-.+-+.|+|++|+|||+||+.+++.. ...++-+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4556677899888888887765311 1223568899999999999999998762 123445554
Q ss_pred cccC---------------------------ChHHHHHHHHhc----cCCeEEEEeccchhhhhhhhHhhhhhccccccc
Q 011254 287 TNLR---------------------------GNMELRNLLIAT----ENKSILVVEDIDCSIELQDRFAKAKATNAMDLN 335 (490)
Q Consensus 287 s~~~---------------------------~~~~l~~l~~~~----~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~ 335 (490)
+... ....+...+... .++.+|||||++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~----------------- 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV----------------- 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----------------
Confidence 4321 011222222211 2378999999974311
Q ss_pred ccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCCCCCCCccccCCCceeeEEEeCC-CCHHHHHHHHHHhhC
Q 011254 336 VIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNHKDRLDPAFLRPGRMDVHIHMSY-CTSCGFKMLASSYLG 414 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~~~~LD~aLlRpGR~d~~I~~~~-p~~~~r~~L~~~~l~ 414 (490)
++.+. .+.-||+||..+..... .. .....++++. .+.++-.+|+..+..
T Consensus 251 ----------------------~~~~~----~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~ 300 (1249)
T 3sfz_A 251 ----------------------LKAFD----NQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVN 300 (1249)
T ss_dssp ----------------------HTTTC----SSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHT
T ss_pred ----------------------HHhhc----CCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhC
Confidence 11111 11246667765543211 11 2234577775 788888888887775
Q ss_pred CCCCCchHHHHHhhhccCCCHH
Q 011254 415 ITEHPLFLEVEGLIEKAKVTPA 436 (490)
Q Consensus 415 ~~~~~l~~~i~~l~~~~~~tpa 436 (490)
.....+.+...++++..+.-|-
T Consensus 301 ~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 301 MKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp SCSTTCCTHHHHHHHHTTTCHH
T ss_pred CChhhCcHHHHHHHHHhCCCHH
Confidence 5444444455666666555553
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.66 E-value=2.1e-05 Score=71.53 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++.++|.|||||||||+++++|..+++++++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457899999999999999999999999998765
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=2.9e-05 Score=69.94 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEecc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s 287 (490)
.-++|.||||+||||+++++|..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999988877653
No 113
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.60 E-value=0.00013 Score=74.11 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=45.5
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc---------------------CChHHHHHHHHh---
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL---------------------RGNMELRNLLIA--- 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~---------------------~~~~~l~~l~~~--- 301 (490)
|++..+-++|+||||+|||+|+..+|..+ +..++.++.... .+..++..++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 34555558999999999999999999875 455655554331 111222222221
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24678999999987753
No 114
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=3.1e-05 Score=71.64 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=29.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
...++|.|||||||||+++++|..+++++++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 456899999999999999999999999987654
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.57 E-value=5.6e-05 Score=67.38 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=28.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
-++|.||||+||||+++.+|..+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47899999999999999999999999887663
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.54 E-value=0.00011 Score=73.57 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=30.8
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---------cCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 288 (490)
|.+...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45656668999999999999999999864 45666665543
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.53 E-value=3.9e-05 Score=69.94 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.+.-++|.||||+||||+++.++..+++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 445689999999999999999999999887763
No 118
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.51 E-value=0.00015 Score=73.41 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccC---------------------ChHHHHHHHHh---
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLR---------------------GNMELRNLLIA--- 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~---------------------~~~~l~~l~~~--- 301 (490)
|.+..+-++|+||||+|||+|+..+|..+ +..+..++...-. +..++..++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45555669999999999999999998654 4555555543210 11222222222
Q ss_pred ccCCeEEEEeccchhh
Q 011254 302 TENKSILVVEDIDCSI 317 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~ 317 (490)
...+.+||||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2358999999999886
No 119
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.48 E-value=0.0002 Score=72.71 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc---------------------CChHHHHHHHHh---
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL---------------------RGNMELRNLLIA--- 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~---------------------~~~~~l~~l~~~--- 301 (490)
|.+..+-++|+||||+|||+|+..+|..+ +..++.++.... .+..++..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45666779999999999999999998764 556666665321 112333333332
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
...+.+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 24678999999988753
No 120
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.47 E-value=4.8e-05 Score=68.62 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.++|.|||||||||++++||..+++++++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 4889999999999999999999999887643
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.46 E-value=0.0003 Score=71.00 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---------cCcEEEEeccc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELTN 288 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---------~~~~~~l~~s~ 288 (490)
|.+...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45555558999999999999999999862 44566665443
No 122
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.46 E-value=5.7e-05 Score=68.55 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=28.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
-++|.|+||+||||+++.+|..+|+++++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999987655
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.45 E-value=0.00053 Score=64.79 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHH
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMA 274 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA 274 (490)
|++...-+.|.||+|+|||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44555668999999999999999999
No 124
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.44 E-value=5.9e-05 Score=68.25 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++.++|.||||+||||+++++|..+++.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 356899999999999999999999998887653
No 125
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.42 E-value=9.1e-05 Score=66.33 Aligned_cols=31 Identities=42% Similarity=0.711 Sum_probs=27.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-+.|.|||||||||+++.+|..++..+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4589999999999999999999999876653
No 126
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.42 E-value=6.4e-05 Score=67.22 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
..++|.|+|||||||+++.+|..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46899999999999999999999999998764
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.42 E-value=0.00038 Score=72.99 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=38.5
Q ss_pred cCCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cC-cEEEEecc
Q 011254 212 LDHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NF-DVYDLELT 287 (490)
Q Consensus 212 ~~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~-~~~~l~~s 287 (490)
-..|.+|++| .+++++.+. .+..++... .+.++|.||||||||+++.+++..+ +. .++.+..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~-~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFN-IVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp ----CCSSCC--CHHHHHHHH-HHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred ccCCCccccC--CHHHHHHHH-HHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 4557778876 445555443 333333321 2368999999999999999999887 33 45555443
No 128
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.41 E-value=0.0004 Score=70.72 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=46.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc---------------------CChHHHHHHHHhc--
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL---------------------RGNMELRNLLIAT-- 302 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~---------------------~~~~~l~~l~~~~-- 302 (490)
|.+..+.++|+||||+|||+|+..+|..+ +.++..+++..- .+..++...+...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45556669999999999999999998764 556666654321 1122333333322
Q ss_pred -cCCeEEEEeccchhh
Q 011254 303 -ENKSILVVEDIDCSI 317 (490)
Q Consensus 303 -~~~sIl~iDdiD~l~ 317 (490)
..+.+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 357899999999875
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.41 E-value=0.00031 Score=71.11 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
|++...-+.|+||||+|||+|+..+|..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45555668999999999999999999886
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=7.4e-05 Score=68.20 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=28.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh-ccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY-LNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~-l~~~~~~l~ 285 (490)
..++|.|+|||||||+++.+|.. +|+++++++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 45899999999999999999999 788887665
No 131
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.40 E-value=7.6e-05 Score=68.55 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=22.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l 284 (490)
.-++++||||+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 347899999999999986666543 5554443
No 132
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.39 E-value=0.00035 Score=68.04 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.+...-++|+||||+|||+|+..+|..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444568999999999999999999754
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.34 E-value=8.5e-05 Score=66.43 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=28.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+-++|.|+||+||||+++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999999887644
No 134
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.33 E-value=0.00011 Score=70.86 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=28.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
-++|.|||||||||++++||..+++.++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887764
No 135
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.31 E-value=0.00044 Score=83.50 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=51.2
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccccCC------------------------hHHHHHHHHh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNLRG------------------------NMELRNLLIA 301 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~~~------------------------~~~l~~l~~~ 301 (490)
|++.++.+||+||||||||+|+.+++.+. |..++.+++..... ...+...+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46677789999999999999999998754 66777776655311 1123334444
Q ss_pred ccCCeEEEEeccchhhh
Q 011254 302 TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ~~~~sIl~iDdiD~l~~ 318 (490)
...+.+||||++..+..
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999998854
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00013 Score=67.29 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=28.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-++|.||||+||||+++.+|..+++++++++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 35889999999999999999999999887653
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=9.9e-05 Score=65.53 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=26.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-++|.||||+||||+++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8889887765
No 138
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.30 E-value=0.0001 Score=66.89 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.+.-++|.|||||||||+++.++..+++.+++.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 4456899999999999999999999998877653
No 139
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00011 Score=66.86 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=27.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-++|.|+|||||||+++.+|..+++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999999877654
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00015 Score=66.97 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+.-++|.||||+||||+++.|+..+|+.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346899999999999999999999988776643
No 141
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.25 E-value=0.00013 Score=64.94 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=27.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++|.|+||+||||+++.++..+++++++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 789999999999999999999999887654
No 142
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00011 Score=66.72 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=26.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-++|.|||||||||+++.+|..+++++++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 478999999999999999999999877654
No 143
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=9.3e-05 Score=66.43 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=24.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH-hccCcEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN-YLNFDVY 282 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~-~l~~~~~ 282 (490)
|.-++|.||||+||||+++.++. .+++.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 34589999999999999999999 5665444
No 144
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.23 E-value=0.00035 Score=68.72 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=28.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.+.-++|.||||+||||++++++..++..++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568999999999999999999988544555554
No 145
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.22 E-value=0.00014 Score=66.31 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=28.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-++|.|||||||||+++.+|..+++++++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 45899999999999999999999998877654
No 146
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00015 Score=65.97 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=28.6
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
..+.-+.|.||||+||||++++||+.++...+.++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 334558899999999999999999987766555553
No 147
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.22 E-value=0.00013 Score=68.41 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=27.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-++|.||||+||||+++.||..++++++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3488999999999999999999999888765
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.22 E-value=0.00012 Score=66.28 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=25.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc-----CcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN-----FDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~-----~~~~~ 283 (490)
.-++|.||||+||||+++.+|..++ +++++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 3588999999999999999999988 66654
No 149
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.21 E-value=0.00058 Score=73.73 Aligned_cols=33 Identities=36% Similarity=0.406 Sum_probs=26.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+-+++.||||||||+++.+++..+ +..+..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 568899999999999999999865 566665543
No 150
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.20 E-value=0.00078 Score=67.07 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=42.0
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHhc-----cCcEEEEecccc---------------------CChHHH-HHHHHh-
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELTNL---------------------RGNMEL-RNLLIA- 301 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~aiA~~l-----~~~~~~l~~s~~---------------------~~~~~l-~~l~~~- 301 (490)
.+.. -++++||||||||+|+..++..+ +..+..++...- .+..++ ..+...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444 47899999999999977766543 445555553321 112222 222222
Q ss_pred ----ccCCeEEEEeccchhhh
Q 011254 302 ----TENKSILVVEDIDCSIE 318 (490)
Q Consensus 302 ----~~~~sIl~iDdiD~l~~ 318 (490)
..++.+||||-|..+..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 23689999999998863
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.19 E-value=0.00015 Score=66.34 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=28.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+.-++|.||||+||||+++.+|..+++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999998776654
No 152
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.18 E-value=0.00052 Score=68.31 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.6
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
|.+...-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555556899999999999999999975
No 153
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00017 Score=67.25 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++|.||||+||||+++.+|..+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 688999999999999999999998887663
No 154
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.15 E-value=0.00017 Score=67.92 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=28.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+.-++|.||||+||||+++.||..+++.++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34589999999999999999999999887765
No 155
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00018 Score=66.93 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=27.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
++|.||||+||||+++.+|..+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 688999999999999999999998887653
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00018 Score=67.42 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-++|.||||+||||+++.||..+++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3588999999999999999999999887665
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.0002 Score=64.28 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-++|.||||+||||++++++..+|..+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 3588999999999999999999988766653
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.12 E-value=0.00092 Score=68.89 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHH
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
|++...-++|+||||||||+|+..+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 444455589999999999999997763
No 159
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.11 E-value=0.00034 Score=63.12 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=29.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
.-+.|.|++|+||||+++.++..+ |++++.++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 447899999999999999999998 889888773
No 160
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.10 E-value=0.00021 Score=65.76 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-++|.|||||||||+++.+|..+|+.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 34889999999999999999999998777654
No 161
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.00021 Score=64.48 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=22.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
.-++|.|+||+||||+++.+|..++++++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999877
No 162
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.10 E-value=0.00034 Score=67.21 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
.+.-++|.||||+||||+++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34568999999999999999999999866666665443
No 163
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.0016 Score=61.32 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=27.7
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh----ccCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~----l~~~~~~l~~ 286 (490)
|.+...-++++|+||+|||+++..+|.. .+.+++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4555566999999999999999887643 2556665543
No 164
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.07 E-value=0.019 Score=61.32 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=33.3
Q ss_pred ccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHH
Q 011254 222 AMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 222 ~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
+|-++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 38888888887766321 112246688999999999999999997
No 165
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.07 E-value=0.00069 Score=61.00 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=16.8
Q ss_pred cceeeeCCCCCcHHHHHHH
Q 011254 254 RGYLLYGPPGTGKSSLIAA 272 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~a 272 (490)
.-+.|.||+|+|||||+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3478999999999999994
No 166
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00025 Score=67.12 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-++|.|||||||||+++.||..+++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3589999999999999999999999887665
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.06 E-value=0.00036 Score=64.34 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=26.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
+.-+.|.||||+||||++++|++.+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3458899999999999999999998765544
No 168
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.04 E-value=0.00018 Score=67.42 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=27.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+.-++|.||||+||||+++.||..+++.++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35689999999999999999999999766543
No 169
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.04 E-value=0.00042 Score=62.86 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=28.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+.|.|+||+||||+++.++..+ |+++++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6899999999999999999998 899888763
No 170
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.00 E-value=0.00038 Score=69.57 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
++.++|.||+|||||+++.++|..++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999998888864
No 171
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00028 Score=65.82 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=26.6
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.||||+||||+++.||..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999888765
No 172
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.99 E-value=0.00043 Score=65.34 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=27.2
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
..++-++|.||||+||+|.|+.||..+|++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34567889999999999999999999887654
No 173
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.98 E-value=0.00023 Score=71.94 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=26.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
..++|.||||+|||+++++||+.++++++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999988844
No 174
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.94 E-value=0.00038 Score=66.56 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=28.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
+.-++|.||||+||||+++.|+..+++.+++++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 456899999999999999999999988877653
No 175
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.93 E-value=0.00049 Score=65.61 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=26.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
+.-+.|.||||+||||++++||..+|...++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4568999999999999999999998876543
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00051 Score=64.19 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=27.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-+.|.|||||||||+++.+++.+|+++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 3578999999999999999999999877653
No 177
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.91 E-value=0.00036 Score=64.30 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=26.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
-+.|.||+||||||+++.+|+ +|+++++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 378999999999999999999 898887765
No 178
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.90 E-value=0.00052 Score=64.57 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=26.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
++|.||||+||||+++.||..++++++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999999876654
No 179
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.90 E-value=0.00064 Score=62.32 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=28.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEec
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 286 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~~ 286 (490)
.-+.|.||||+||||+++.++..+ |++++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 347899999999999999999999 688887764
No 180
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.89 E-value=0.00054 Score=64.07 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=24.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
++|.||||+||+|.|+.||..+|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6788999999999999999999876643
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.00099 Score=61.22 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=25.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC--cEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l 284 (490)
.-++|.||||+||||+++.||..++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 34789999999999999999999876 35443
No 182
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.87 E-value=0.00041 Score=62.74 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-++|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999886
No 183
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.87 E-value=0.00055 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.693 Sum_probs=25.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
+.|.|+|||||||+++.+|..++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 6899999999999999999999987653
No 184
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.86 E-value=0.0007 Score=61.61 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=26.7
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+.|.|||||||||+++.++..+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6789999999999999999999 999886643
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.85 E-value=0.00044 Score=63.85 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=26.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
-+.|.||+||||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 467999999999999999998 898887654
No 186
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.84 E-value=0.0005 Score=66.27 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=29.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
...+.|.||||+||||+++.||..+|+++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 356899999999999999999999999988864
No 187
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.82 E-value=0.00054 Score=62.96 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=28.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
-+.|.||+|+||||+++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999988765
No 188
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.78 E-value=0.0008 Score=64.17 Aligned_cols=32 Identities=34% Similarity=0.371 Sum_probs=28.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-+.|.||||+||||+++.||..+++.+++.+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCC
Confidence 45889999999999999999999998876643
No 189
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.00059 Score=63.04 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
-+.|.|++||||||+++.++..+|+++++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4778999999999999999999999988865
No 190
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.76 E-value=0.0011 Score=61.12 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=26.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
+.-+.|.||+||||||++++||..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4558899999999999999999988 44434444
No 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.75 E-value=0.0073 Score=68.91 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=31.7
Q ss_pred ccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 222 AMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 222 ~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
+|-++..++|.+.+.. ....+-+.++||+|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 6777777777665531 011456899999999999999999864
No 192
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.75 E-value=0.00075 Score=65.12 Aligned_cols=32 Identities=38% Similarity=0.463 Sum_probs=27.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh---ccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~ 285 (490)
.-++|.|+||+||||+++.++.. .|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999998 788887554
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.65 E-value=0.0021 Score=59.78 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
|++...-+.|.||+|+|||||++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555558999999999999999999854
No 194
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.64 E-value=0.0037 Score=59.10 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=39.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc-------c-------------CChHHHHHHHHhc---cCCeEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN-------L-------------RGNMELRNLLIAT---ENKSILV 309 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~-------~-------------~~~~~l~~l~~~~---~~~sIl~ 309 (490)
++++||||+|||+++..++..+ |..++.+.... + ....++...+... ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 6788999999999998888766 55666553211 1 1122344333332 2478999
Q ss_pred Eeccchh
Q 011254 310 VEDIDCS 316 (490)
Q Consensus 310 iDdiD~l 316 (490)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999754
No 195
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.64 E-value=0.0013 Score=62.23 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
.+++.|+||+|||+++-++|..+ |+++..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 48899999999999999999876 777765544
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.64 E-value=0.00078 Score=61.63 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=27.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-+.|.|++||||||+++.+|.. |+++++.+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45889999999999999999998 88888765
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.63 E-value=0.0005 Score=63.44 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=25.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
.-+.|.|+|||||||+++.++..++...+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4478999999999999999999886554433
No 198
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.62 E-value=0.0056 Score=56.64 Aligned_cols=108 Identities=11% Similarity=0.152 Sum_probs=66.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc--cC-Ch-----------------------------HHHHHHH
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN--LR-GN-----------------------------MELRNLL 299 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~--~~-~~-----------------------------~~l~~l~ 299 (490)
-+++|+++|.||||+|-++|-.. |+.++.+.+.. .. ++ ......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 47899999999999999999765 77777774322 10 00 1112222
Q ss_pred Hh----c--cCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEE
Q 011254 300 IA----T--ENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIF 373 (490)
Q Consensus 300 ~~----~--~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~ 373 (490)
.. . ..-.+|++||+-..+.. .-.....++..+.. ..+..-||+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~---------------------------g~l~~~ev~~~l~~----Rp~~~~vIl 158 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAY---------------------------DYLPLEEVISALNA----RPGHQTVII 158 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHT---------------------------TSSCHHHHHHHHHT----SCTTCEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccC---------------------------CCCCHHHHHHHHHh----CcCCCEEEE
Confidence 22 2 24579999999654320 11223445666553 234577889
Q ss_pred ecCCCCCCCccccCCCceeeEEEeC
Q 011254 374 TTNHKDRLDPAFLRPGRMDVHIHMS 398 (490)
Q Consensus 374 TTN~~~~LD~aLlRpGR~d~~I~~~ 398 (490)
|+|.+ +++|+- .-|.+=+|.
T Consensus 159 TGr~a---p~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 159 TGRGC---HRDILD--LADTVSELR 178 (196)
T ss_dssp ECSSC---CHHHHH--HCSEEEECC
T ss_pred ECCCC---cHHHHH--hCcceeeec
Confidence 99974 667776 667776664
No 199
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.58 E-value=0.0011 Score=61.69 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-+.|.|+||||||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 45889999999999999999999999887764
No 200
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.54 E-value=0.0011 Score=61.82 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=27.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-+.|.|++|+||||+++.++. +|+++++.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 3578999999999999999998 888887764
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.52 E-value=0.0029 Score=75.61 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHh---ccCcEEEEeccccC---------------------ChHHHHHHHHhc--
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELTNLR---------------------GNMELRNLLIAT-- 302 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~---l~~~~~~l~~s~~~---------------------~~~~l~~l~~~~-- 302 (490)
|++.++.++|+||||||||+|+.++|.. .|..++.++..... ....+.+++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 6777788999999999999999999875 36677777665431 133344444433
Q ss_pred -cCCeEEEEeccchhhh
Q 011254 303 -ENKSILVVEDIDCSIE 318 (490)
Q Consensus 303 -~~~sIl~iDdiD~l~~ 318 (490)
..+.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 4689999999998864
No 202
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.50 E-value=0.0024 Score=64.71 Aligned_cols=24 Identities=54% Similarity=0.854 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+++.||+|+||||++++|++.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 478999999999999999998873
No 203
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.49 E-value=0.0018 Score=62.13 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=26.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
.-+.|.||+||||||+++.||..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 347899999999999999999999988775
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.46 E-value=0.0011 Score=61.20 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=26.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~ 285 (490)
.-+.|.||||+||||+++.|++.+ ++.++..+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 347799999999999999999987 66655544
No 205
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.0016 Score=60.21 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+.++-++|.||||+||||+++.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456689999999999999999999874
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.45 E-value=0.0017 Score=59.01 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
-+.|.||||+||||++++|+..++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986654
No 207
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.45 E-value=0.015 Score=60.64 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=55.0
Q ss_pred CeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccCCCCcEEEEEecCC-------
Q 011254 305 KSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSSCGDERIIIFTTNH------- 377 (490)
Q Consensus 305 ~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~~~~~~iiI~TTN~------- 377 (490)
|.|++|||+|.+- ....+.||..|+.. ... ++|++||.
T Consensus 296 ~~VliIDEa~~l~------------------------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~ 340 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------------------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRG 340 (456)
T ss_dssp ECEEEEESGGGCB------------------------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBT
T ss_pred ceEEEEechhhcC------------------------------HHHHHHHHHHhhcc----CCC-EEEEecCCccccccc
Confidence 4799999999872 23567788888753 223 45555533
Q ss_pred ------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCC
Q 011254 378 ------KDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLASSYLGI 415 (490)
Q Consensus 378 ------~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~~~l~~ 415 (490)
++.|+|.++. |+.. +.|+.++.++..++++..+..
T Consensus 341 ~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~ 381 (456)
T 2c9o_A 341 TEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQT 381 (456)
T ss_dssp TSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHH
T ss_pred cccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHH
Confidence 7789999999 9966 699999999999999876643
No 208
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.45 E-value=0.013 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 209
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0029 Score=65.38 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=27.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+.-++|.||||+||||++++++..+++.+++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 45588999999999999999999988766543
No 210
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.43 E-value=0.001 Score=65.17 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=26.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc-cCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l-~~~~~~l~ 285 (490)
+.-++|.||||+||||+++.++..+ ++.+++.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 3458999999999999999999974 76665443
No 211
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.42 E-value=0.0021 Score=60.86 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=27.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
-+.|.||+||||||+++.+|..+|+++++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 4788999999999999999999998887654
No 212
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.41 E-value=0.00083 Score=62.01 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=22.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
.-++|.|+|||||||+++.++..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999998753
No 213
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0017 Score=58.72 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+-+.|.||+|+|||||+++|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999764
No 214
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.39 E-value=0.0015 Score=65.64 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=31.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
+-++|.||+|+|||+|+..||..++..+++.|--.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 358899999999999999999999998888775543
No 215
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.38 E-value=0.0048 Score=67.39 Aligned_cols=58 Identities=26% Similarity=0.422 Sum_probs=36.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
|..|-+-.+++.+++.|...+. . +.-.|+.||||||||+++..+...+ +..+..+..+
T Consensus 182 ~~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 182 PLTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3344344568888888766553 1 1236899999999997666555443 5556555543
No 216
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.38 E-value=0.0017 Score=62.19 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=25.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
+.-+.|.|||||||||+++.|+..+++++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34588999999999999999999999873
No 217
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.34 E-value=0.023 Score=60.14 Aligned_cols=40 Identities=5% Similarity=0.118 Sum_probs=32.0
Q ss_pred EEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011254 369 RIIIFTTNHKD--RLDPAFLRPGRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 369 ~iiI~TTN~~~--~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~ 410 (490)
+-+|++|.+++ .++..+.. -+...|-|...+..+.+.++.
T Consensus 333 I~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 333 IHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred cEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 77888999887 57776665 778888999999988887764
No 218
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.33 E-value=0.0059 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+++.|++|+|||+|+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.33 E-value=0.0015 Score=60.60 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=27.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.++++|.||+|+|||+|+.+++...+ .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46899999999999999999999876 555444
No 220
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.006 Score=56.17 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEeccc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTN 288 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~ 288 (490)
.-+.|.||+|+||||+++.++..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 347889999999999999999976 66676665443
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0032 Score=57.00 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=25.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~ 285 (490)
+.-++|.|+||+||||+++.+|..++ .++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 34578999999999999999999874 3344444
No 222
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.31 E-value=0.028 Score=60.16 Aligned_cols=41 Identities=7% Similarity=0.105 Sum_probs=32.5
Q ss_pred cEEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011254 368 ERIIIFTTNHKD--RLDPAFLRPGRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 368 ~~iiI~TTN~~~--~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~ 410 (490)
++-+|++|.+|. .|+..+.. -|...|.|...+..+-+.++.
T Consensus 378 GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 378 GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred CeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 488999999987 78877765 677888999888888776663
No 223
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.30 E-value=0.0023 Score=63.51 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=29.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.++-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 34568899999999999999999999887776654
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.27 E-value=0.002 Score=58.94 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+.-+.|.||||+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457899999999999999999987
No 225
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.23 E-value=0.016 Score=53.77 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=30.6
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSL 269 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~l 269 (490)
.+|+++...+.+.+.+... -+..+..|+.... --.+.+++.+|+|+|||..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 5799998888777766432 0111111111110 1135699999999999976
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.21 E-value=0.003 Score=59.36 Aligned_cols=38 Identities=26% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|.+.+.-++|+||||+|||+|+..+|..+ +..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45555668999999999999988887643 455555554
No 227
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.19 E-value=0.0023 Score=59.36 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=27.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
.-+.|.||+|||||++++.+|..+|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 357899999999999999999999999986
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.17 E-value=0.0033 Score=58.27 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=26.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc----CcEEEEe
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLE 285 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~ 285 (490)
+.-++|.|+||+||||+++.|+..++ ++++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44588999999999999999999875 4466555
No 229
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.15 E-value=0.012 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-++|.|++|+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999999864
No 230
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.15 E-value=0.0026 Score=59.01 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
++-+.|.||+|+||||+++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 345889999999999999999998753
No 231
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.15 E-value=0.0021 Score=62.82 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=26.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-+.|.|+|||||||+++.++ .+|+++++.+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 348899999999999999999 6888876654
No 232
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.14 E-value=0.0025 Score=64.01 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-++|.||+|+|||+++..||..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46889999999999999999999987666654
No 233
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.12 E-value=0.016 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 234
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.12 E-value=0.0077 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 235
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0058 Score=63.60 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 226 DMKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 226 ~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
.+++.+.+.+...+..+...... ...|.-+++.||||+||||++..+|..+ |..+..+++
T Consensus 74 ~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 74 HIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44555666665554431100000 1235668999999999999999999876 556655553
No 236
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.11 E-value=0.018 Score=53.25 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCC---CCcceeeeCCCCCcHHHHHHHHHH
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA---WKRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
.+..+|+++...+.+.+.+.+. -+..+..|+....+ -.+.+++.+|+|+|||..+-..+-
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 3446799998888777776541 01111112111110 135699999999999976554443
No 237
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.11 E-value=0.039 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38999999999999999998765
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.09 E-value=0.0041 Score=57.55 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3477899999999999999999875
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.09 E-value=0.011 Score=58.26 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=26.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 286 (490)
++-++|.||+|+||||++..||..+ |..+..++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4568899999999999999999866 445655554
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.06 E-value=0.0034 Score=57.44 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+|||||++.|++.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3478899999999999999999863
No 241
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.03 E-value=0.022 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 242
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.03 E-value=0.012 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+.+++.+|+|+|||.++..++..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999888777653
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.02 E-value=0.0033 Score=57.10 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+-+.|.||+|+|||||+++|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 244
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.99 E-value=0.014 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 245
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.97 E-value=0.0065 Score=47.27 Aligned_cols=46 Identities=7% Similarity=-0.157 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 398 SYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 398 ~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
|.|+.++|.+||+.++......-..++..++..+ +||+|||.+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999999765432234567777655 499999998874
No 246
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.97 E-value=0.017 Score=61.43 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
|++...-++|.||||+|||+|++.+|..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555568999999999999999999765
No 247
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.96 E-value=0.0029 Score=58.37 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=24.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc--CcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~--~~~~~ 283 (490)
.-+.|.||+|+|||||++.|++.++ ..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 3478999999999999999999987 44443
No 248
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.96 E-value=0.013 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34899999999999999999974
No 249
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.96 E-value=0.0039 Score=61.95 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=28.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEecc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELT 287 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s 287 (490)
+-+++.||+|+|||+|+..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578899999999999999999998776665543
No 250
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.96 E-value=0.012 Score=66.67 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
.+-++|.||.|+||||+.+.+|.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45589999999999999999884
No 251
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.95 E-value=0.0053 Score=58.28 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=26.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.++++||+|+|||.++.+++..++..++.+-.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999999999888766665543
No 252
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.95 E-value=0.028 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35899999999999999999864
No 253
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.95 E-value=0.011 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999863
No 254
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.93 E-value=0.016 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=17.1
Q ss_pred cceeeeCCCCCcHHHH-HHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSL-IAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~l-a~aiA~~ 276 (490)
+.+++.+|+|+|||.. +..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 5699999999999976 3333343
No 255
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.92 E-value=0.021 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 256
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.92 E-value=0.012 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 257
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.91 E-value=0.018 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 258
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.90 E-value=0.008 Score=55.50 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=25.8
Q ss_pred cceeeeCCCCCcHH-HHHHHHHHhc--cCcEEEEe
Q 011254 254 RGYLLYGPPGTGKS-SLIAAMANYL--NFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT-~la~aiA~~l--~~~~~~l~ 285 (490)
+-+++|||.|+||| .|++++.++. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 34789999999999 9999998865 55666665
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.88 E-value=0.004 Score=57.38 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
++-+.|.||+|+|||||++.|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998763
No 260
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.87 E-value=0.032 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 261
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.86 E-value=0.024 Score=58.99 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHhccCCeEEEEeccchhhhhhhhHhhhhhcccccccccccccccCCchhhHHHHHHHHhcccccC------CCCcE
Q 011254 296 RNLLIATENKSILVVEDIDCSIELQDRFAKAKATNAMDLNVIQPVMNLNQVPQVTLSGMLNFIDGLWSS------CGDER 369 (490)
Q Consensus 296 ~~l~~~~~~~sIl~iDdiD~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~idgl~s~------~~~~~ 369 (490)
+..+..+....||++||||.+....+.... ..........||..+||-..+ ...++
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~~~~------------------D~s~egvq~aLL~~le~~~~~~~~~~~d~~~i 303 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGA------------------DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 303 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSCSSS------------------HHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCCCCC------------------CchHHHHHHHHHHHhcccccccccceecCCcE
Confidence 344444556789999999998631110000 001122446789999984211 12458
Q ss_pred EEEEec----CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011254 370 IIIFTT----NHKDRLDPAFLRPGRMDVHIHMSYCTSCGFKMLAS 410 (490)
Q Consensus 370 iiI~TT----N~~~~LD~aLlRpGR~d~~I~~~~p~~~~r~~L~~ 410 (490)
++|+|. +.+.++-|.|+. ||+.+|+|+.++.+++..|+.
T Consensus 304 lfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 304 LFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred EEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 899887 233445577877 999999999999999999984
No 262
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.86 E-value=0.005 Score=60.89 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHcHHHHHHhC--CCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 226 DMKQMIMDDLERFVKRKEFYRNVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 226 ~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||+.+
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455566666665553321001122 2233458899999999999999999986
No 263
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.85 E-value=0.018 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998643
No 264
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.83 E-value=0.011 Score=51.51 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 011254 255 GYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~ 275 (490)
-++|.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999999974
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.83 E-value=0.0055 Score=54.65 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+...-+.|.||.|+|||||+++|++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 333448899999999999999999987
No 266
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.81 E-value=0.022 Score=64.67 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
.+-++|.||.|+||||+.+.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35589999999999999999953
No 267
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.80 E-value=0.0051 Score=60.96 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=27.0
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
.++.+.-+.|.||+|+|||||+++|++.+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 456666689999999999999999999883333
No 268
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.79 E-value=0.06 Score=46.53 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHh
Q 011254 256 YLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~ 276 (490)
+++.|++|+|||+|+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 269
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.78 E-value=0.023 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999963
No 270
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.78 E-value=0.024 Score=63.28 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=34.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHH--cHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHh
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVK--RKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~--~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
..+|+++...+...+.+...-..+.. .......+ .-...+++.||+|+|||+++..++..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34688887777666555432211111 11111111 11245899999999999987777544
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.75 E-value=0.006 Score=56.00 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
|-++|.||+|+|||||+++|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5589999999999999999988764
No 272
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.74 E-value=0.0052 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+.-+.|.||+|+|||||++.|++.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4458899999999999999999977
No 273
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.71 E-value=0.03 Score=50.03 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-++|.|+||+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998754
No 274
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.71 E-value=0.019 Score=64.13 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
++-++|.||.|+||||+.+++|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 345889999999999999999975
No 275
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.69 E-value=0.04 Score=50.14 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.1
Q ss_pred cceeeeCCCCCcHHHHHH
Q 011254 254 RGYLLYGPPGTGKSSLIA 271 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~ 271 (490)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999996443
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.69 E-value=0.0056 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
..-+.|.||+|+|||||+++|++.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34478999999999999999999874
No 277
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.034 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
..-+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 278
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.65 E-value=0.017 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|+||+|||+|+.++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999999864
No 279
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.65 E-value=0.011 Score=61.53 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=42.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecccc------------------------CC-h--HHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELTNL------------------------RG-N--MELRNLLIAT 302 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s~~------------------------~~-~--~~l~~l~~~~ 302 (490)
++.+++.||||+||||++.++|..+ |..+..+++... .+ + .-+.+.+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999876 455655543211 00 0 1233455555
Q ss_pred cCCeEEEEeccchh
Q 011254 303 ENKSILVVEDIDCS 316 (490)
Q Consensus 303 ~~~sIl~iDdiD~l 316 (490)
....+++||..-.+
T Consensus 179 ~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 179 KKADVLIIDTAGRH 192 (432)
T ss_dssp SSCSEEEEECCCSC
T ss_pred hCCCEEEEcCCCCc
Confidence 56679999987654
No 280
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.64 E-value=0.0074 Score=65.49 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=30.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+.-++|.|+||+||||++++++..+ |++++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 3448899999999999999999999 999998863
No 281
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.64 E-value=0.0052 Score=60.02 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=28.6
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEe
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLE 285 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~ 285 (490)
|++...-++|.||||+|||+|++.||..+ |..++.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 55556668999999999999999999876 43555444
No 282
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.64 E-value=0.0062 Score=57.83 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=25.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
+-|.||||+||||+++.||..++++.+..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55789999999999999999999887654
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.62 E-value=0.019 Score=58.67 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-++|.||||||||+|++.||+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 348999999999999999999865
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.61 E-value=0.0067 Score=57.37 Aligned_cols=30 Identities=30% Similarity=0.456 Sum_probs=25.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc--CcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN--FDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~--~~~~~l 284 (490)
-+.|.||||+||||+++.|+..++ .+++..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 367889999999999999999986 465543
No 285
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.58 E-value=0.008 Score=62.43 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
++-+++.||+|+||||++..||..+ |..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4568899999999999999999876 556655543
No 286
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.015 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 287
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.58 E-value=0.011 Score=54.06 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEEEEecccc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNL 289 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~ 289 (490)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888877776543
No 288
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.57 E-value=0.022 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999865
No 289
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.56 E-value=0.027 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 290
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.56 E-value=0.003 Score=58.22 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.4
Q ss_pred eeeeCCCCCcHHHHHHHHHHhcc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+.|.||+|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999885
No 291
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0067 Score=56.22 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
++-+.|.||+|+|||||+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998764
No 292
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.019 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 293
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.54 E-value=0.031 Score=55.20 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=32.1
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCC----CCcceeeeCCCCCcHHHHHHHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA----WKRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
.+|+++...+.+.+.+.+. -+..+..++...++ -++.+++.+|+|+|||..+...+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 4577777777666665431 01111111111111 125789999999999987655443
No 294
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.53 E-value=0.027 Score=52.71 Aligned_cols=55 Identities=9% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHHH
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~la 270 (490)
....+|+++...+.+.+.+.+. -+..+.-++.... --.+.+++.+|+|+|||..+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEA---QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHT---TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cccCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 3345688888777777666431 0111111111111 11356999999999999853
No 295
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.53 E-value=0.007 Score=61.34 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHcHHHHHHhC--CCCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 226 DMKQMIMDDLERFVKRKEFYRNVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 226 ~~k~~i~~~l~~~l~~~~~y~~~g--~~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.||+.+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 344555555554443221001122 2233458899999999999999999986
No 296
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.52 E-value=0.014 Score=60.31 Aligned_cols=49 Identities=29% Similarity=0.422 Sum_probs=34.2
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCCCCcc-eeeeCCCCCcHHHHHHHHHHhcc
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+.+++++....+.+..+.+ + + ..+.| +++.||+|+||||++++|++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~-l---~-----------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRR-L---I-----------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHH-H---H-----------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHH-H---H-----------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4568888776655433322 2 1 11334 78999999999999999999884
No 297
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.51 E-value=0.006 Score=57.61 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=27.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 283 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~ 283 (490)
.-+.+.|++|||||++++.+|..+|+++++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999999977
No 298
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.045 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-++|.|++|+|||+|+.+|.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 458999999999999999999743
No 299
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.47 E-value=0.027 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 300
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.47 E-value=0.035 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.43 E-value=0.0087 Score=57.83 Aligned_cols=26 Identities=46% Similarity=0.751 Sum_probs=22.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
..-++|.||+|+||||++++|++.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC
Confidence 34488999999999999999999763
No 302
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.42 E-value=0.0073 Score=63.60 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-++|.||+|+|||||++.||+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHh
Confidence 347899999999999999999986
No 303
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.40 E-value=0.0073 Score=62.00 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=27.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~~l~ 285 (490)
.-+++.||+|+|||+|+..+|..++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999999987766554
No 304
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.39 E-value=0.0084 Score=56.38 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.+.-+.|.||+|+|||||+++|++.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344578999999999999999999875
No 305
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.38 E-value=0.033 Score=50.70 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|++|+|||+|+.++.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.37 E-value=0.0077 Score=55.31 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|+|||||++.||+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36899999999999999999986
No 307
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.37 E-value=0.028 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999965
No 308
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=95.36 E-value=0.012 Score=47.00 Aligned_cols=48 Identities=10% Similarity=-0.099 Sum_probs=35.5
Q ss_pred EeCCCCHHHHHHHHHHhhCCCCCCchHHHHHhhhcc-CCCHHHHHHHHH
Q 011254 396 HMSYCTSCGFKMLASSYLGITEHPLFLEVEGLIEKA-KVTPADVAEQLM 443 (490)
Q Consensus 396 ~~~~p~~~~r~~L~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~i~~~l~ 443 (490)
+-++|+.++|.+|++.++.........++..++..+ +||+|||.+++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 347899999999999999765322233456666554 699999999864
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.35 E-value=0.029 Score=48.87 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.5
Q ss_pred eeeeCCCCCcHHHHHHHHHH
Q 011254 256 YLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~ 275 (490)
+++.|+||+|||+|+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999974
No 310
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.32 E-value=0.011 Score=57.98 Aligned_cols=27 Identities=30% Similarity=0.253 Sum_probs=23.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
+.-+.+.||+|+|||||++.|+..++.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345788999999999999999998863
No 311
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.30 E-value=0.04 Score=51.44 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHH
Q 011254 213 DHPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSL 269 (490)
Q Consensus 213 ~~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~l 269 (490)
.++.+|+++...+.+.+.+.+. . +..+..++...+ --.+.+++.+|+|+|||..
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~--g-~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAA--G-FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHT--T-CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCCCCHhhcCCCHHHHHHHHHC--C-CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 3456799988887777666431 0 111111111111 1135699999999999976
No 312
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.28 E-value=0.1 Score=52.00 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcH-----HHHHHhCCCCCcceeeeCCCCCcHHHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRK-----EFYRNVGKAWKRGYLLYGPPGTGKSSLIA 271 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~-----~~y~~~g~~~~rg~LL~GPpGtGKT~la~ 271 (490)
.+|+++...+.+.+.+.+. -+..+ +.+..+-...++.+++.+|+|+|||..+-
T Consensus 5 ~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM---KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 5688888777777666541 00111 11111111234789999999999998654
No 313
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.25 E-value=0.049 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 314
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.25 E-value=0.031 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 315
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.24 E-value=0.02 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+++.|++|+|||+|+.++.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 316
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.24 E-value=0.034 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999976
No 317
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.19 E-value=0.0087 Score=59.27 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHcHHHHHHhCCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 227 MKQMIMDDLERFVKRKEFYRNVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 227 ~k~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
+++.+.+.+...+.....+ .+....+.-+++.||+|+||||+++.+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4455555555444322100 0112234458899999999999999999876 445554443
No 318
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.16 E-value=0.01 Score=56.39 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
-+-|.||+|+||||+++.|++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 36789999999999999999988754
No 319
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.14 E-value=0.021 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 320
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.14 E-value=0.015 Score=63.33 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..+++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888877654
No 321
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.13 E-value=0.012 Score=59.86 Aligned_cols=28 Identities=43% Similarity=0.649 Sum_probs=23.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
..+.-++|.||+|+||||++++|++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3344589999999999999999999763
No 322
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.13 E-value=0.018 Score=57.56 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.+.-+.|.||+|+||||+++.||+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34558899999999999999999976
No 323
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.12 E-value=0.016 Score=50.99 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999853
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.11 E-value=0.0088 Score=54.22 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=23.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
.+|+||.||+|+|||+++.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 579999999999999999999874 4443
No 325
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.10 E-value=0.065 Score=50.85 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=29.7
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~la 270 (490)
.+|+++...+.+.+.+...= +..+..++...+ --.+.+++.+|+|+|||..+
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLG---WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh
Confidence 56888887777666553310 001111111110 11367999999999999753
No 326
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.10 E-value=0.017 Score=57.18 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|.+...-++|.|+||+|||+|+..+|... +.++..+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56666669999999999999999999654 346665554
No 327
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.08 E-value=0.091 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|+||+|||+|+.++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999865
No 328
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.08 E-value=0.02 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 329
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.07 E-value=0.012 Score=62.50 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=23.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
+.-++|.|+||+||||+++.+|.++++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345899999999999999999999843
No 330
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.03 E-value=0.0051 Score=60.40 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=25.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEeccccC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELTNLR 290 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~~s~~~ 290 (490)
-+.|.||+|+||||+++.++..++ ..+..+++.++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 478899999999999999999876 445555655553
No 331
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.032 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 332
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.99 E-value=0.017 Score=57.44 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=28.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
.++-+++.||+|+||||++..||..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34558899999999999999999876 5566655543
No 333
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.98 E-value=0.022 Score=50.15 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|+||+|||+|+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 334
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.13 Score=56.54 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=31.0
Q ss_pred CCccccccChhHHHHHHHH-HHHHHH-cHHHHHHhCCCCCcceeeeCCCCCcHHHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDD-LERFVK-RKEFYRNVGKAWKRGYLLYGPPGTGKSSLIA 271 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~-l~~~l~-~~~~y~~~g~~~~rg~LL~GPpGtGKT~la~ 271 (490)
.+|+++...+.+++.+... +..+.. ..+.+.. +..-.+.+++.||+|+|||+.+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHH
Confidence 4678887777666544321 000000 1111221 12235679999999999999873
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.96 E-value=0.0069 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=15.3
Q ss_pred cceeeeCCCCCcHHHHHHHHH-Hhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMA-NYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA-~~l~ 278 (490)
.-+.|.||+|+||||+++.|+ +.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 447899999999999999999 7753
No 336
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.96 E-value=0.011 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999999998875
No 337
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.95 E-value=0.048 Score=48.78 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 338
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.94 E-value=0.03 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|+||+|||+|+.++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999854
No 339
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.88 E-value=0.063 Score=50.50 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=29.4
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHHH
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~la 270 (490)
..+|+++...+.+.+.+.+. -+..+..++...+ --.+.+++.+|+|+|||...
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 35788887777666655431 0111111111100 01357999999999999763
No 340
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.87 E-value=0.015 Score=57.48 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3458899999999999999999887
No 341
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.034 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.87 E-value=0.015 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
...-+.|.||+|+|||||+++++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999875
No 343
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.86 E-value=0.036 Score=61.64 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
..-++|.||.|+||||+.+.+|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 355889999999999999999975
No 344
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.84 E-value=0.039 Score=63.33 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMA 274 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA 274 (490)
++.++|.||.|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568999999999999999994
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.83 E-value=0.022 Score=56.77 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||+||||||++++|+..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 477899999999999999999875
No 346
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.78 E-value=0.04 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999873
No 347
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.74 E-value=0.039 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3899999999999999998753
No 348
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.74 E-value=0.027 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 349
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.74 E-value=0.078 Score=62.59 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.7
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+.+.-+.|.||+|+|||||+++|.+++.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3444588999999999999999999873
No 350
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.72 E-value=0.016 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.70 E-value=0.025 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 352
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.68 E-value=0.071 Score=49.44 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCCccc-cccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHHH
Q 011254 215 PATFDT-LAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 215 ~~~f~~-l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~la 270 (490)
..+|++ +...+++.+.+.+. -+..+..++...+ --.+.+++.+|+|+|||..+
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRV---GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred hhhHhhhhccCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 357888 56666665555431 0111111111111 12356899999999999753
No 353
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.68 E-value=0.018 Score=61.93 Aligned_cols=33 Identities=27% Similarity=0.155 Sum_probs=28.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc----CcEEEEec
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL 286 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~----~~~~~l~~ 286 (490)
.-++|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3478899999999999999999987 77888773
No 354
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.66 E-value=0.022 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|++|+|||+|+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 355
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.65 E-value=0.023 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 356
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.65 E-value=0.029 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 34899999999999999999974
No 357
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.64 E-value=0.07 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 011254 254 RGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~ 275 (490)
.-+++.|++|+|||+|+.++.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999964
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.64 E-value=0.014 Score=57.75 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||+|+|||||++.|++.++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999876
No 359
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.092 Score=46.78 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~ 275 (490)
..-+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999985
No 360
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.028 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 361
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.62 E-value=0.3 Score=47.68 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcH-----HHHHHhCCCCCcceeeeCCCCCcHHHH
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRK-----EFYRNVGKAWKRGYLLYGPPGTGKSSL 269 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~-----~~y~~~g~~~~rg~LL~GPpGtGKT~l 269 (490)
...+|+++...+.+.+.|... -+..+ ..+..+-...++.+++++|+|||||..
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred CcCCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH
Confidence 346799998888777766431 01111 111112112347899999999999965
No 362
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.61 E-value=0.14 Score=56.26 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.0
Q ss_pred CcceeeeCCCCCcHHHHH
Q 011254 253 KRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la 270 (490)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 467999999999999877
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.57 E-value=0.019 Score=57.00 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||+|+|||||++.|++.+.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 367899999999999999999874
No 364
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.57 E-value=0.028 Score=58.57 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 286 (490)
|.+.+.-++|.||||+|||+|+..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45555558999999999999999998764 456766654
No 365
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.57 E-value=0.025 Score=63.31 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888887654
No 366
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.56 E-value=0.015 Score=61.65 Aligned_cols=62 Identities=21% Similarity=0.446 Sum_probs=40.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC--cEEEEeccc-cC-----------------ChHHHHHHHHhc--cCCeEEEE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTN-LR-----------------GNMELRNLLIAT--ENKSILVV 310 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~-~~-----------------~~~~l~~l~~~~--~~~sIl~i 310 (490)
+.++++.||+|+||||++++|++.+.. .++.++-.. +. ....+..++..+ .+|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 456999999999999999999998843 344443221 10 111344444433 37889999
Q ss_pred eccc
Q 011254 311 EDID 314 (490)
Q Consensus 311 DdiD 314 (490)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9874
No 367
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.56 E-value=0.0092 Score=57.30 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=23.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc-cCcEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL-NFDVY 282 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l-~~~~~ 282 (490)
-|.|.|++|+||||+++.|+..+ +..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 47889999999999999999998 54443
No 368
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.56 E-value=0.018 Score=53.90 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEEec
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 286 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~ 286 (490)
.+-|.|..||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 467999999999999999998 9999998875
No 369
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.55 E-value=0.02 Score=53.58 Aligned_cols=31 Identities=32% Similarity=0.316 Sum_probs=25.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc---CcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~---~~~~~l~ 285 (490)
-+.|.||+|+||||+++.++..+. ++++...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 367889999999999999999884 5665443
No 370
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.52 E-value=0.015 Score=55.48 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+|||||+++|++.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999999764
No 371
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.49 E-value=0.013 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
..-+.|.||+|+|||||+++|++.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 372
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.49 E-value=0.013 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
.-+.|.||+|+|||||+++|++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34789999999999999999987643
No 373
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.41 E-value=0.018 Score=58.13 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.1
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
..-+.|.||+|+|||||+++|++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999987654
No 374
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.41 E-value=0.012 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||+|+|||||+++|++.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998764
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.41 E-value=0.015 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+.|.||+|+|||||+++|++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999999986
No 376
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.40 E-value=0.046 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 377
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.39 E-value=0.012 Score=61.75 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=24.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFD 280 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~ 280 (490)
+.-++|.|.||+||||+++.+|..++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3458999999999999999999987543
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.39 E-value=0.021 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999999984
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.38 E-value=0.016 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=22.2
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
...-+++.|++|+|||+|+.++++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999753
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.36 E-value=0.03 Score=58.13 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=29.1
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~ 286 (490)
|.+...-++|.|+||+|||+|+..+|... |.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45555558999999999999999998754 456766654
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.34 E-value=0.053 Score=49.22 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 011254 255 GYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~ 275 (490)
-++|.|+||+|||+|+.++++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 382
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.34 E-value=0.047 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 383
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.33 E-value=0.026 Score=53.35 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc-------cCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL-------NFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l-------~~~~~~l~ 285 (490)
+.|.||+|+||||+++.++..+ |++++.+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 6778999999999999999988 56665443
No 384
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.30 E-value=0.18 Score=49.05 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=21.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
+.+++.+|+|+|||..+...+-..+..++
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~l 60 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSL 60 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEE
Confidence 57999999999999877666555444433
No 385
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.29 E-value=0.021 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+.|.||+|+|||||++++++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999986
No 386
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.28 E-value=0.017 Score=54.09 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||.|+|||||+++|++.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998764
No 387
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.26 E-value=0.049 Score=50.09 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 011254 255 GYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~ 275 (490)
-+++.|++|+|||+|+.++.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 388
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.19 E-value=0.028 Score=59.41 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
++.+++.|+||+||||++.+||..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568899999999999999999776 566666554
No 389
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.19 E-value=0.017 Score=55.76 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
.-+.|.||+|+|||||+++|++.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34789999999999999999998753
No 390
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.18 E-value=0.021 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|+|||||++++++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 391
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.14 E-value=0.025 Score=51.02 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
.-+.+.|++|+|||+++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 357899999999999999999876 45555444
No 392
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.11 E-value=0.017 Score=55.59 Aligned_cols=24 Identities=42% Similarity=0.791 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||.|+|||||+++|++.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998764
No 393
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.10 E-value=0.026 Score=48.72 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 394
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.10 E-value=0.016 Score=54.66 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||.|+|||||+++|++.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4478999999999999999999763
No 395
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.09 E-value=0.017 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||+|+|||||+++|++.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999999876
No 396
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.04 E-value=0.034 Score=60.24 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+-+++.||||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999988887654
No 397
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.03 E-value=0.29 Score=46.60 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.2
Q ss_pred cceeeeCCCCCcHHHHHH
Q 011254 254 RGYLLYGPPGTGKSSLIA 271 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~ 271 (490)
+.+++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 568999999999997543
No 398
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.00 E-value=0.19 Score=50.40 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=32.5
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcH-----HHHHHhCCCCCcceeeeCCCCCcHHHHH
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRK-----EFYRNVGKAWKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~-----~~y~~~g~~~~rg~LL~GPpGtGKT~la 270 (490)
...+|+++...+.+.+.+.+. -+..+ +.+..+-...++.+++.+|+|+|||..+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345789988888777766441 01111 1111111112467999999999999764
No 399
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.00 E-value=0.019 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=21.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999999976
No 400
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.00 E-value=0.019 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||+|+|||||+++|++.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999998764
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.99 E-value=0.048 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999875
No 402
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.99 E-value=0.019 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
..-+.|.||+|+|||||+++|++.+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34588999999999999999998763
No 403
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.99 E-value=0.02 Score=55.41 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||.|+|||||+++|++.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3478999999999999999999874
No 404
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.98 E-value=0.033 Score=57.82 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEeccc
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELTN 288 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s~ 288 (490)
.++.+++.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35678899999999999999999776 66677666543
No 405
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.94 E-value=0.019 Score=54.98 Aligned_cols=25 Identities=44% Similarity=0.539 Sum_probs=22.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
-+.|.||.|+|||||+++|++.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4789999999999999999998643
No 406
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.94 E-value=0.019 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||.|+|||||+++|++.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999764
No 407
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.94 E-value=0.02 Score=55.57 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=22.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+|||||+++|++.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999999874
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.94 E-value=0.023 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999764
No 409
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.91 E-value=0.024 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+.|.||+|+|||||+++|++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34789999999999999999996
No 410
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.90 E-value=0.18 Score=50.92 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHHHHH
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSLIAA 272 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~la~a 272 (490)
..+|+++...+.+.+.|... . +..+..++...+ --.+.+++.+|+|+|||..+-.
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g-~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--G-FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--T-CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--C-CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHH
Confidence 45799998888777766432 0 111111111111 1135699999999999965543
No 411
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.035 Score=62.12 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=23.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEecc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELT 287 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s 287 (490)
-+|+.||||||||+++..++..+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999999887776544 3455544433
No 412
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.88 E-value=0.027 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 413
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.87 E-value=0.026 Score=54.59 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||.|+|||||+++|++.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999974
No 414
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.85 E-value=0.019 Score=54.91 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+|||||+++|++.+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999999864
No 415
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.85 E-value=0.026 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999999976
No 416
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.83 E-value=0.026 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999876
No 417
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.82 E-value=0.039 Score=51.71 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=25.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccCcEEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 284 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~~~~~l 284 (490)
-+.|.||+|+||||+++.++..++.++..+
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 367889999999999999999998754333
No 418
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.82 E-value=0.025 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+.|.|+||+|||+|+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 419
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.81 E-value=0.021 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=21.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
-+.|.||.|+|||||+++|++.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999999764
No 420
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.80 E-value=0.092 Score=53.57 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=22.6
Q ss_pred CCCcc--eeeeCCCCCcHHHHHHHHHHhc
Q 011254 251 AWKRG--YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~la~aiA~~l 277 (490)
|..+| .++.||||||||+|+..||+..
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 44455 8999999999999999999864
No 421
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.79 E-value=0.082 Score=46.92 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 422
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.76 E-value=0.13 Score=51.85 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~la 270 (490)
.+|+++...+.+.+.+.+. -+..+..|+...+ -..+.+++.+|+|+|||..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc---CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHH
Confidence 5688888887777666431 0011111111100 11356899999999999864
No 423
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.75 E-value=0.092 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+.|.|+||+|||||..++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999974
No 424
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.72 E-value=0.026 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||.|+|||||+++|++.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3478999999999999999998764
No 425
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.72 E-value=0.021 Score=55.21 Aligned_cols=25 Identities=36% Similarity=0.696 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+|||||+++|++.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3478999999999999999998763
No 426
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.71 E-value=0.03 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37799999999999999999876
No 427
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.70 E-value=0.049 Score=54.79 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=20.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||||+|||||+.++++.+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.70 E-value=0.057 Score=56.10 Aligned_cols=32 Identities=41% Similarity=0.575 Sum_probs=25.9
Q ss_pred CCCcc--eeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 251 AWKRG--YLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
+.++| +.|.||+|||||||++.||+....+.-
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 33444 789999999999999999999865543
No 429
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.70 E-value=0.023 Score=60.17 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=23.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
..+.|.|++||||||++++||..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34788999999999999999999985
No 430
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.69 E-value=0.05 Score=54.52 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=29.4
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
|..+..-++|.|+||+|||+|+..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45555558999999999999999998764 566665554
No 431
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.68 E-value=0.51 Score=48.83 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCCccccccChhHHHHHHHHHHHHHHc-----HHHHHHhCCCCCcceeeeCCCCCcHHHHH-HHHHH
Q 011254 215 PATFDTLAMDSDMKQMIMDDLERFVKR-----KEFYRNVGKAWKRGYLLYGPPGTGKSSLI-AAMAN 275 (490)
Q Consensus 215 ~~~f~~l~g~~~~k~~i~~~l~~~l~~-----~~~y~~~g~~~~rg~LL~GPpGtGKT~la-~aiA~ 275 (490)
..+|+++...+.+.+.|... -+.. ...+..+-...++.+|+.||+|+|||... .++..
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~ 154 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHT
T ss_pred cCCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHH
Confidence 35789998888777666431 0011 11111111123467999999999999763 34443
No 432
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.67 E-value=0.029 Score=56.72 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+..++|.||+|+|||||+++|++.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45689999999999999999999874
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.66 E-value=0.024 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|+||+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999873
No 434
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.66 E-value=0.023 Score=54.55 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||.|+|||||+++|++.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999998763
No 435
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.65 E-value=0.049 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|++|+|||+|+.++.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 436
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.65 E-value=0.031 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47799999999999999999876
No 437
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.65 E-value=0.029 Score=57.06 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999876
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.64 E-value=0.034 Score=48.77 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.0
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l 277 (490)
.+++||.|+|||+++.||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999998765
No 439
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.63 E-value=0.025 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||.|+|||||+++|++.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3478999999999999999998763
No 440
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.62 E-value=0.059 Score=63.64 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
+.-+-|+||+|+|||||+++|.+.+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3447899999999999999999876
No 441
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.62 E-value=0.029 Score=57.06 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999999876
No 442
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.61 E-value=0.025 Score=56.47 Aligned_cols=62 Identities=16% Similarity=0.385 Sum_probs=39.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccC--cEEEEeccc-c-----------C--ChHHHHHHHHhc--cCCeEEEEeccc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELTN-L-----------R--GNMELRNLLIAT--ENKSILVVEDID 314 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~--~~~~l~~s~-~-----------~--~~~~l~~l~~~~--~~~sIl~iDdiD 314 (490)
+..+++.||+|+|||||+++|++.+.. ..+.++... + . +....+..+..+ .+|.+|++||+-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 356899999999999999999998742 233333211 0 0 122333333332 478899999975
No 443
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.59 E-value=0.31 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+.+.|++|+|||||+.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999983
No 444
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.57 E-value=0.036 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 445
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.55 E-value=0.13 Score=54.08 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=27.6
Q ss_pred CCCcc--eeeeCCCCCcHHHH-HHHHHHhccCcEEEE
Q 011254 251 AWKRG--YLLYGPPGTGKSSL-IAAMANYLNFDVYDL 284 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~l-a~aiA~~l~~~~~~l 284 (490)
|..|| .++.|++|||||+| +..|++..+.+++.+
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 44555 89999999999999 679999988876533
No 446
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.55 E-value=0.048 Score=56.78 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
|.....-++|.|+||+|||+|+..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44444558999999999999999988765 5667666543
No 447
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.53 E-value=0.019 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
.+.|.||+|+|||||++.|+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999999998743
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.53 E-value=0.023 Score=60.85 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|||||||+++||+.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3478999999999999999999985
No 449
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.52 E-value=0.041 Score=58.07 Aligned_cols=39 Identities=15% Similarity=-0.016 Sum_probs=29.2
Q ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHhc----cCcEEEEecc
Q 011254 249 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELT 287 (490)
Q Consensus 249 g~~~~rg~LL~GPpGtGKT~la~aiA~~l----~~~~~~l~~s 287 (490)
|.+...-++|.|+||+|||+|+..+|..+ |.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34444458999999999999999998765 4567666543
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.51 E-value=0.037 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999874
No 451
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.50 E-value=0.04 Score=54.19 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=27.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEecc
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELT 287 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~s 287 (490)
++-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4457888999999999999999877 5666666544
No 452
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.49 E-value=0.03 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||+|+||||+++.++..++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3477889999999999999998873
No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.47 E-value=0.072 Score=55.07 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEec
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 286 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~~ 286 (490)
++.+++.||+|+||||++..+|..+ +..+..+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4567888999999999999999887 445555544
No 454
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.46 E-value=0.054 Score=54.50 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=25.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc---cCcEEEEe
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 285 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l---~~~~~~l~ 285 (490)
.-+.|.|+||+|||||+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 357899999999999999999876 55554444
No 455
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.46 E-value=0.034 Score=48.34 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 456
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.45 E-value=0.027 Score=54.50 Aligned_cols=24 Identities=33% Similarity=0.758 Sum_probs=21.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||+|+|||||+++|++.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 347899999999999999999876
No 457
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.45 E-value=0.069 Score=53.44 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||||+|||||+++|++.+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37799999999999999999875
No 458
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.42 E-value=0.077 Score=50.81 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999875
No 459
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.41 E-value=0.028 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=21.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999876
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.36 E-value=0.036 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|++|+|||+|+.++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999974
No 461
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.34 E-value=0.017 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=20.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHhcc
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+.|.||+|+|||||+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 36789999999999999999874
No 462
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.29 E-value=0.02 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHH
Q 011254 254 RGYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~ 275 (490)
.-++|.|++|+|||+|+.++.+
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999884
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.25 E-value=0.033 Score=59.20 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=26.3
Q ss_pred CCCCcceeeeCCCCCcHHHHHHH--HHHhc--cCcEEEEec
Q 011254 250 KAWKRGYLLYGPPGTGKSSLIAA--MANYL--NFDVYDLEL 286 (490)
Q Consensus 250 ~~~~rg~LL~GPpGtGKT~la~a--iA~~l--~~~~~~l~~ 286 (490)
++...-++|.||+|||||||++. +++.+ +-..+.++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45556699999999999999999 45554 233444443
No 464
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.23 E-value=0.18 Score=50.25 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCCccccccChhHHHHHHHHHHHHHHcHHHHHHhCCC---CCcceeeeCCCCCcHHHHH
Q 011254 214 HPATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGKA---WKRGYLLYGPPGTGKSSLI 270 (490)
Q Consensus 214 ~~~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~~---~~rg~LL~GPpGtGKT~la 270 (490)
...+|+++...+.+.+.+... . +..+..++....+ -.+.+++.+|+|+|||..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g-~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--G-FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--T-CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--C-CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 346799998888777766542 0 1111111111110 1356899999999999763
No 465
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.20 E-value=0.058 Score=54.29 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.1
Q ss_pred eeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 256 YLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
+.|.||+|+|||||++.|++.+..+..
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 789999999999999999999876543
No 466
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.20 E-value=0.15 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-++|.|++|+|||+|++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999988874
No 467
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.17 E-value=0.12 Score=54.23 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.6
Q ss_pred CCCcc--eeeeCCCCCcHHHH-HHHHHHhccCcEEE
Q 011254 251 AWKRG--YLLYGPPGTGKSSL-IAAMANYLNFDVYD 283 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~l-a~aiA~~l~~~~~~ 283 (490)
|..|| .++.|++|||||+| +..|++..+.+++.
T Consensus 159 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~ 194 (507)
T 1fx0_A 159 PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVIC 194 (507)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEE
T ss_pred ccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEE
Confidence 44455 89999999999999 67999988777543
No 468
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.13 E-value=0.046 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999763
No 469
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.05 E-value=0.027 Score=56.88 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|||||||.++||+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999999876
No 470
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.03 E-value=0.045 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHh
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
..-+++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999863
No 471
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.01 E-value=0.031 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.6
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||.|+|||||+++|++.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347899999999999999999876
No 472
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.97 E-value=0.041 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.|++|+||||+++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999987
No 473
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.97 E-value=0.044 Score=51.63 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC----cEEE
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF----DVYD 283 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~----~~~~ 283 (490)
-+.|.|++|+||||+++.++..++. +++.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3677899999999999999998754 5554
No 474
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.93 E-value=0.31 Score=51.72 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=42.9
Q ss_pred CCCcc--eeeeCCCCCcHHHHHHHHHHhccCcEEEEeccccCChHHHHHHHHhc------------cCCeEEEEeccchh
Q 011254 251 AWKRG--YLLYGPPGTGKSSLIAAMANYLNFDVYDLELTNLRGNMELRNLLIAT------------ENKSILVVEDIDCS 316 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~la~aiA~~l~~~~~~l~~s~~~~~~~l~~l~~~~------------~~~sIl~iDdiD~l 316 (490)
|..+| .++.|++|||||+|+..||+..+.+++..-+-. +...++.+++... -.+++||.--.|..
T Consensus 223 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~~~iG-ER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p 301 (588)
T 3mfy_A 223 PQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIYIGCG-ERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMP 301 (588)
T ss_dssp CEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEEEECC-SSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSC
T ss_pred CcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEEEEec-ccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCC
Confidence 44445 899999999999999999998776654332221 1234455555443 14678887766654
Q ss_pred h
Q 011254 317 I 317 (490)
Q Consensus 317 ~ 317 (490)
.
T Consensus 302 ~ 302 (588)
T 3mfy_A 302 V 302 (588)
T ss_dssp H
T ss_pred H
Confidence 3
No 475
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.91 E-value=0.12 Score=54.47 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=27.3
Q ss_pred CCCcc--eeeeCCCCCcHHHH-HHHHHHhccCcEEEE
Q 011254 251 AWKRG--YLLYGPPGTGKSSL-IAAMANYLNFDVYDL 284 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~l-a~aiA~~l~~~~~~l 284 (490)
|..|| .++.|++|||||+| +..|++..+.+++.+
T Consensus 171 PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V 207 (515)
T 2r9v_A 171 PIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCI 207 (515)
T ss_dssp CEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEE
T ss_pred ccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEE
Confidence 44455 89999999999999 679999988886533
No 476
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.88 E-value=0.038 Score=56.55 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+.|.||+|||||||.++||+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 447899999999999999999865
No 477
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.85 E-value=0.08 Score=50.10 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=25.2
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc--cCcEEEEe
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL--NFDVYDLE 285 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l--~~~~~~l~ 285 (490)
.+++.|++|+||||++..+|..+ |..+..++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 46788999999999999999776 55665554
No 478
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.82 E-value=0.042 Score=48.72 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.0
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+.|.|+||+|||||+.++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 479
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.051 Score=56.85 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
....-+.|.||.|+|||||++.|++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 334448999999999999999999976
No 480
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.74 E-value=0.049 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|+||+|||+|+.++.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999875
No 481
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.68 E-value=0.053 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|+||+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999753
No 482
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.63 E-value=0.032 Score=55.15 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 251 AWKRGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 251 ~~~rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+...-+.|.||+|+|||||+++|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3344588999999999999999999774
No 483
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.61 E-value=0.043 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
.-+++.|++|+|||+|+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 484
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.60 E-value=0.06 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 485
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.59 E-value=0.053 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
+-+++.|++|+|||||+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998863
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.59 E-value=0.091 Score=48.64 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=24.8
Q ss_pred eeeeCCCCCcHHHHHHHHHHhc--cCcEEEEe
Q 011254 256 YLLYGPPGTGKSSLIAAMANYL--NFDVYDLE 285 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~l--~~~~~~l~ 285 (490)
|.|-|+.|+||||+++.++..+ |++++...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 5678999999999999999988 56665543
No 487
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.56 E-value=0.067 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHhccCcE
Q 011254 253 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 281 (490)
Q Consensus 253 ~rg~LL~GPpGtGKT~la~aiA~~l~~~~ 281 (490)
.+|+||.|++|+|||+++.++... |..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 578999999999999999999875 4444
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.52 E-value=0.054 Score=49.96 Aligned_cols=25 Identities=40% Similarity=0.510 Sum_probs=22.1
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhccC
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYLNF 279 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l~~ 279 (490)
-.+|+||.|+|||+++.||.-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3689999999999999999987765
No 489
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.45 E-value=0.054 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+-|.||+|+|||||+++|++.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3478999999999999999998763
No 490
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.45 E-value=0.045 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.3
Q ss_pred eeeeCCCCCcHHHHHHHHHHh
Q 011254 256 YLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 256 ~LL~GPpGtGKT~la~aiA~~ 276 (490)
+++.|++|+|||+|+.++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999864
No 491
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.40 E-value=0.066 Score=47.16 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHh
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~ 276 (490)
--+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 492
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.38 E-value=0.05 Score=53.88 Aligned_cols=30 Identities=33% Similarity=0.390 Sum_probs=24.2
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHhccCcEE
Q 011254 252 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 282 (490)
Q Consensus 252 ~~rg~LL~GPpGtGKT~la~aiA~~l~~~~~ 282 (490)
..+|+||.||+|+|||++|.++.. -|..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 357899999999999999999865 355444
No 493
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.36 E-value=0.058 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHH
Q 011254 255 GYLLYGPPGTGKSSLIAAMAN 275 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~ 275 (490)
-+++.|+||+|||+|+.++++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999997
No 494
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.34 E-value=0.068 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999999864
No 495
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.32 E-value=0.027 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHhc
Q 011254 255 GYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~l 277 (490)
-+.|.||+|+|||||++++++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
No 496
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.30 E-value=0.2 Score=52.65 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCCcc--eeeeCCCCCcHHHH-HHHHHHhccCcEEE
Q 011254 251 AWKRG--YLLYGPPGTGKSSL-IAAMANYLNFDVYD 283 (490)
Q Consensus 251 ~~~rg--~LL~GPpGtGKT~l-a~aiA~~l~~~~~~ 283 (490)
|..|| .++.|++|||||++ ...|++..+.+++.
T Consensus 158 PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~ 193 (513)
T 3oaa_A 158 PIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKC 193 (513)
T ss_dssp CCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEE
T ss_pred ccccCCEEEeecCCCCCcchHHHHHHHhhccCCceE
Confidence 44455 89999999999999 58999887777543
No 497
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.29 E-value=0.052 Score=54.87 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=21.9
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhcc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYLN 278 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l~ 278 (490)
.-+.|.||||+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3578999999999999999998654
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.29 E-value=0.07 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHh
Q 011254 255 GYLLYGPPGTGKSSLIAAMANY 276 (490)
Q Consensus 255 g~LL~GPpGtGKT~la~aiA~~ 276 (490)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 499
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.25 E-value=0.07 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHhc
Q 011254 254 RGYLLYGPPGTGKSSLIAAMANYL 277 (490)
Q Consensus 254 rg~LL~GPpGtGKT~la~aiA~~l 277 (490)
.-+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 500
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.25 E-value=0.37 Score=49.51 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=30.1
Q ss_pred CCccccccChhHHHHHHHHHHHHHHcHHHHHHhCC---CCCcceeeeCCCCCcHHHH
Q 011254 216 ATFDTLAMDSDMKQMIMDDLERFVKRKEFYRNVGK---AWKRGYLLYGPPGTGKSSL 269 (490)
Q Consensus 216 ~~f~~l~g~~~~k~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKT~l 269 (490)
.+|+++...+.+.+.|... -+..+.-+++..+ --.+.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKS---GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 5799988877776665431 0111111121111 1236799999999999973
Done!