BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011256
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 135/270 (50%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ ++ TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 69
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 124
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASA--DIRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D++++ + K C+KT+
Sbjct: 185 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNDLKLWDYSKGK----CLKTYTGHKNE 239
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G+CL +
Sbjct: 101 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-----AHS 152
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 213 ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G + TL HS V++V F +G L ++ S D R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDN +D S G CL T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY----TG 235
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + +V IW+++++ V K GH V + +
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 133 SVRIWDVKTGM---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 190 LID--DDNPPVSF--VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQ 270
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 135/270 (50%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ ++ TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 69
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 124
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 185 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 239
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G+CL +
Sbjct: 101 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-----AHS 152
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G + TL HS V++V F +G L ++ S D R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 235
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + +V IW+++++ V K GH V + +
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 133 SVRIWDVKTGM---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 190 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 246 NFSVTGGKWIVSGSEDNMVYIWNLQ 270
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 88
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 143
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 204 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 258
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 120 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 171
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 231
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 232 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 198
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 254
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 255 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 314
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 315 IIASAALENDKTIKLW 330
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 152 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 209 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 265 NFSVTGGKWIVSGSEDNLVYIWNLQ 289
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 90
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 91 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 145
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 206 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 260
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 122 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 173
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 233
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 234 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 286
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 200
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 256
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 257 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 316
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 317 IIASAALENDKTIKLW 332
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 154 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 211 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 267 NFSVTGGKWIVSGSEDNLVYIWNLQ 291
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 17/272 (6%)
Query: 214 FDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 273
F +P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGH 67
Query: 274 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333
+ V + + V+AS D T +D+SSG CL + G F+P
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQS 122
Query: 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLR 392
++ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 393 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS 450
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 183 SGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHK 237
Query: 451 GTGKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 101 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 152
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 235
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 377 YLATAAHDGVKLWDLRK 393
+A+AA + K L K
Sbjct: 296 IIASAALENDKTIKLYK 312
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 133 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 190 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 135/272 (49%), Gaps = 17/272 (6%)
Query: 214 FDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 273
F +P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGH 67
Query: 274 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333
+ V + + V+AS D T +D+SSG CL + G F+P
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQS 122
Query: 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLR 392
++ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 393 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS 450
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 183 SGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHK 237
Query: 451 GTGKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 101 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 152
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 10/186 (5%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 235
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 377 YLATAA 382
+A+AA
Sbjct: 296 IIASAA 301
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 133 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 190 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 134/272 (49%), Gaps = 17/272 (6%)
Query: 214 FDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH 273
F +P+ + TL+GH+K V+SVKF G+ SADK +++W G+ DG ++ T+ H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-GAYDGKFE--KTISGH 67
Query: 274 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333
+ V + + V+AS D T +D+SSG CL + G F+P
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQS 122
Query: 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLR 392
++ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 393 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS 450
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 183 SGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHK 237
Query: 451 GTGKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 179
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 235
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 133 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 190 LID--DDNPPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 72
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 127
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 188 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 242
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 104 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 155
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 238
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 136 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 193 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQ 273
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 83
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 84 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 138
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 199 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 253
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 115 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 166
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 226
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 227 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 279
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 193
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 249
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 309
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 310 IIASAALENDKTIKLW 325
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 147 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 204 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 260 NFSVTGGKWIVSGSEDNLVYIWNLQ 284
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 62
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 63 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 117
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 178 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 232
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 233 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 94 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 145
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 205
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 206 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 172
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 228
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 288
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 289 IIASAALENDKTIKLW 304
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 126 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 183 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 239 NFSVTGGKWIVSGSEDNLVYIWNLQ 263
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 72
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 127
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 188 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 242
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 104 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 155
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 238
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 136 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 193 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQ 273
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 66
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 121
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 182 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 236
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 98 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 149
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 232
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 293 IIASAALENDKTIKLW 308
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 130 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 187 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQ 267
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 66
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 121
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 182 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 236
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 98 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 149
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 176
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 232
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 293 IIASAALENDKTIKLW 308
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 130 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 187 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 243 NFSVTGGKWIVSGSEDNLVYIWNLQ 267
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 71
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 72 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 126
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 187 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 241
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 103 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 154
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 214
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 215 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 181
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 237
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 297
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 298 IIASAALENDKTIKLW 313
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 135 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 192 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 248 NFSVTGGKWIVSGSEDNLVYIWNLQ 272
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 67
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 68 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 122
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 183 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 237
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 238 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 99 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 150
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 210
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 211 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 177
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 233
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 293
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 294 IIASAALENDKTIKLW 309
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 131 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 188 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 244 NFSVTGGKWIVSGSEDNLVYIWNLQ 268
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 72
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 73 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 127
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 188 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 242
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 104 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 155
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 215
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 182
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 238
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 299 IIASAALENDKTIKLW 314
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 136 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 193 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 249 NFSVTGGKWIVSGSEDNLVYIWNLQ 273
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 17/270 (6%)
Query: 216 RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+P+ + TL+GH+K V+SVKF G+ + SADK +++W G+ DG ++ T+ H
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-GAYDGKFE--KTISGHKL 65
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
+ V + + V+AS D T +D+SSG CL + G F+P +
Sbjct: 66 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNL 120
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKL 394
+ +G+ + V+IWDVK+ + H V+A+ F+ +G + ++++DG+ ++WD
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452
+ ++ D+ P + V F +G Y+ A+ D ++++ + K C+KT+
Sbjct: 181 QCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNE 235
Query: 453 GKATCVKFG-PDAKYIAVGSMDRNLRVFGL 481
F K+I GS D + ++ L
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+A+ D ++ G+ T+SGH ++ V + ++ +L ++ S DKT+++W S
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C TLK H+ V + + V+ S D + +D+ +G CL +
Sbjct: 97 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHS 148
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLAT 380
+ ++ F+ DG ++ + + + L +IWD S Q D V+ + FS NG Y+
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 208
Query: 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASADIRVY 431
A D +KLWD K K +++ +E +F + G ++ S D VY
Sbjct: 209 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
++I +G D + ++D +G+ + TL HS V++V F +G L ++ S D R+W
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--- 175
Query: 260 EDGNYDCKHTL-KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
+ + C TL D V V KY + A+LDNT +D S G CL T
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG 231
Query: 319 GRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
+ E Y A G + +G+ + LV IW+++++ V K GH V + +
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Query: 377 YLATAAHDG---VKLW 389
+A+AA + +KLW
Sbjct: 292 IIASAALENDKTIKLW 307
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 194 DIHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251
D+ +S D ++ + D ++D SG+ + TL GHS V F + +L ++GS D+
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311
+VR+W C TL H+ V AV + V++S D +D +SG CL
Sbjct: 129 SVRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-- 369
+ D D P + F P+G + T + +K+WD + + GH I
Sbjct: 186 LID--DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 241
Query: 370 SFS-ENGYYLATAAHDG-VKLWDLR 392
+FS G ++ + + D V +W+L+
Sbjct: 242 NFSVTGGKWIVSGSEDNLVYIWNLQ 266
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 134/295 (45%), Gaps = 29/295 (9%)
Query: 195 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+ +S D IA+ D L++R +GQ++ TL+GHS V V F +G + S DKT
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312
V++W + N TL H++ V V + +AS D T ++ + + T
Sbjct: 122 VKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177
Query: 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372
G AF PDG + + + + VK+W+ Q + GH +V ++FS
Sbjct: 178 ------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFS 230
Query: 373 ENGYYLATAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASADIRV 430
+G +A+A+ D VKLW+ +N + ++ + + N V F G +A AS D V
Sbjct: 231 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 431 YQVASVKADWN-CIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMDRNLRVFGLPG 483
WN + L+G + V F PD + IA S D+ ++++ G
Sbjct: 287 KL-------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 29/295 (9%)
Query: 195 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+ +S D IA+ D L++R +GQ++ TL+GHS V V F +G + S DKT
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312
V++W + N TL H++ V V + +AS D T ++ + + T
Sbjct: 245 VKLW----NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT 300
Query: 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372
G AF PDG + + + + VK+W+ Q ++ GH +V ++FS
Sbjct: 301 ------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFS 353
Query: 373 ENGYYLATAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASADIRV 430
+G +A+A+ D VKLW+ +N + ++ + + V F G +A AS D V
Sbjct: 354 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 431 YQVASVKADWN-CIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMDRNLRVFGLPG 483
WN + L+G + V F PD + IA S D+ ++++ G
Sbjct: 410 KL-------WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 29/295 (9%)
Query: 195 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+ +S D IA+ D L++R +GQ++ TL+GHS V V F +G + S DKT
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 80
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312
V++W + N TL H++ V+ V + +AS D T ++ + + T
Sbjct: 81 VKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372
G AF PDG + + + + VK+W+ Q + GH +V ++FS
Sbjct: 137 ------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFS 189
Query: 373 ENGYYLATAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASADIRV 430
+G +A+A+ D VKLW+ +N + ++ + + V F G +A AS D V
Sbjct: 190 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 431 YQVASVKADWN-CIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483
WN + L+G + V F PD + IA S D+ ++++ G
Sbjct: 246 KL-------WNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 29/291 (9%)
Query: 195 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+ +S D IA+ D L++R +GQ + TL+GHS V V F +G + S DKT
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 367
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312
V++W + N TL H++ V+ V + +AS D T ++ + + T
Sbjct: 368 VKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Query: 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372
G AF PD + + + + VK+W+ Q + GH +V ++FS
Sbjct: 424 ------GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFS 476
Query: 373 ENGYYLATAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASADIRV 430
+G +A+A+ D VKLW+ +N + ++ + + V F G +A AS D V
Sbjct: 477 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 431 YQVASVKADWN-CIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMDRNLRVF 479
WN + L+G + V F PD + IA S D+ ++++
Sbjct: 533 KL-------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284
L HS V V F +G + S DKTV++W + N TL H++ V V
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSP 67
Query: 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344
+ +AS D T ++ + + T G AF PDG + + + +
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLT------GHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 403
VK+W+ Q + GH +V ++FS +G +A+A+ D VKLW+ R + ++
Sbjct: 122 VKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 179
Query: 404 DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWN----CIKTFPDLSGTGKATCVK 459
S V F G +A AS D V WN ++T TG ++ V+
Sbjct: 180 SSSVW--GVAFSPDGQTIASASDDKTVKL-------WNRNGQLLQTL-----TGHSSSVR 225
Query: 460 ---FGPDAKYIAVGSMDRNLRVFGLPG 483
F PD + IA S D+ ++++ G
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWNRNG 252
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 195 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+ +S D IA+ D L++R +GQ++ TL+GHS V V F +G + S DKT
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312
V++W + N TL H++ V+ V + +AS D T ++ + + T
Sbjct: 491 VKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Query: 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 349
G AF PDG + + +S+ VK+W+
Sbjct: 547 ------GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 132/302 (43%), Gaps = 39/302 (12%)
Query: 201 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW--QG 258
V+ + D ++D +G TL GH+ V + F G L + SAD T+++W QG
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318
++C T+ H V +V++ + V+AS D T +++ +G C+ +
Sbjct: 182 -----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----- 231
Query: 319 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS-ENGY- 376
G E + DG ++ + +++ V++W V ++ A+ H V IS++ E+ Y
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291
Query: 377 ------------------YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417
+L + + D +K+WD+ + D+ V F HS
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--VRGVLF-HS 348
Query: 418 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLR 477
G ++ AD + +V K C+KT + T + F A Y+ GS+D+ ++
Sbjct: 349 GGKFILSCADDKTLRVWDYKNK-RCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Query: 478 VF 479
V+
Sbjct: 406 VW 407
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284
LSGH VT V F + ++ S D T++VW E G+++ TLK HT VQ ++
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFE--RTLKGHTDSVQDISFDH 160
Query: 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344
+ K + S D T +D C+ + G +S + P+G + + + +
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMH-----GHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLW 389
+K+W+V++ V F GH V + +++G +A+ ++D V++W
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 67/262 (25%)
Query: 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD 250
+S D +S ++A+ D L+D + + T+ GH V+SV + GD ++ S D
Sbjct: 156 ISFD--HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 213
Query: 251 KTVRVWQ---------------------GSEDGNY------------------DCKHTLK 271
KT+++W+ ++DG +CK L+
Sbjct: 214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 272 DHTAEVQAVTVHATNKY--------------------FVTASLDNTWCFYDLSSGICLTQ 311
+H V+ ++ + Y ++ S D T +D+S+G+CL
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333
Query: 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF 371
+ G D G FH G + + + +++WD K++ + + H VT++ F
Sbjct: 334 L--VGHDNWVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 372 SENGYYLATAAHD-GVKLWDLR 392
+ Y+ T + D VK+W+ R
Sbjct: 389 HKTAPYVVTGSVDQTVKVWECR 410
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384
T FHP ++ + + +A +K+WD ++ GH +V ISF +G LA+ + D
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 171
Query: 385 -GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN 441
+KLWD + + R+ D +SV +G ++ AS D I++++V +
Sbjct: 172 MTIKLWDFQGFECIRTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQTG----Y 225
Query: 442 CIKTFPDLSGTGKATCVKF---GPDAKYIAVGSMDRNLRVFGLPGNDAPSE 489
C+KTF TG V+ D IA S D+ +RV+ + + +E
Sbjct: 226 CVKTF-----TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 271
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 121/268 (45%), Gaps = 21/268 (7%)
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284
L GHS V+ V G+ ++ S D ++R+W N C++ HT +V +V
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ---NGQCQYKFLGHTKDVLSVAFSP 119
Query: 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSE 342
N+ V+ DN +++ G C+ +S + + F P D ++ +G +
Sbjct: 120 DNRQIVSGGRDNALRVWNVK-GECMHTLSRGA---HTDWVSCVRFSPSLDAPVIVSGGWD 175
Query: 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV-KLWDLRKLKNFRSFE 401
LVK+WD+ + V GH VT+++ S +G A++ DGV +LWDL K +
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 402 SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKAT--CV 458
+ P N + F + ++ A+ IR++ + + ++ P+ G+ K CV
Sbjct: 236 AG---APINQICFSPNRYWMCAATEKGIRIFDLENKDI---IVELAPEHQGSKKIVPECV 289
Query: 459 K--FGPDAKYIAVGSMDRNLRVFGLPGN 484
+ D + G D +RV+G+ N
Sbjct: 290 SIAWSADGSTLYSGYTDNVIRVWGVSEN 317
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L++ +GQ GH+K V SV F + ++G D +RVW + +C HTL
Sbjct: 93 LWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW----NVKGECMHTLSR 148
Query: 273 --HTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328
HT V V + V+ DN +DL++G +T + G TS
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK-----GHTNYVTSVT 203
Query: 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSENGYYLATAAHDGVK 387
PDG + + + + ++WD+ +++ GA + I FS N Y++ A G++
Sbjct: 204 VSPDGSLCASSDKDGVARLWDLTKGEALSEM--AAGAPINQICFSPNRYWMCAATEKGIR 261
Query: 388 LWDLRK 393
++DL
Sbjct: 262 IFDLEN 267
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 201 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260
VI +GG D ++D +G++VT L GH+ VTSV +G L + D R+W ++
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 261 DGNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 319
L + A + + N+Y++ A+ + +DL + + +++
Sbjct: 228 ------GEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGS 281
Query: 320 R---PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 354
+ PE S A+ DG L +G ++ ++++W V A
Sbjct: 282 KKIVPE-CVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 14/194 (7%)
Query: 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG 361
D S C + D +G + A +G + + + +++W++++ KF G
Sbjct: 48 DRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLG 107
Query: 362 HVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420
H V +++FS + + + D +++W++ K + + + V F S
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 421 LAVASAD----IRVYQVASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRN 475
+ S ++V+ +A+ + DL G T T V PD A D
Sbjct: 167 PVIVSGGWDNLVKVWDLATG-------RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 476 LRVFGLPGNDAPSE 489
R++ L +A SE
Sbjct: 220 ARLWDLTKGEALSE 233
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 196 HYSKDVIAT--------GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 247
H+ DV+ + G D L+D +G GH+K V SV F ++ ++G
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 248 SADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTV--HATNKYFVTASLDNTWCFYDL 303
S DKT+++W CK+T++D H+ V V +++N V+ D ++L
Sbjct: 147 SRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 363
++ C + + G G + PDG + +G + +WD+ ++ DG
Sbjct: 203 AN--CKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 256
Query: 364 GAVTAISFSENGYYLATAAHDGVKLWDLR------KLKNFRSFESSDSETP-TNSVDFDH 416
+ A+ FS N Y+L A +K+WDL +LK SS +E P S+ +
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 417 SGSYLAVASAD--IRVYQV 433
G L D +RV+QV
Sbjct: 317 DGQTLFAGYTDNLVRVWQV 335
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 16/214 (7%)
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284
L GHS V+ V ++G L+GS D T+R+W + HT +V +V +
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---TRRFVGHTKDVLSVAFSS 138
Query: 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILGTGTS 341
N+ V+ S D T ++ + G+C V D + E + F P+ +I+ G
Sbjct: 139 DNRQIVSGSRDKTIKLWN-TLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGW- 193
Query: 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 400
+ LVK+W++ + GH G + ++ S +G A+ DG LWDL + K+ +
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Query: 401 ESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 433
+ D N++ F + +L A+ I+++ +
Sbjct: 254 DGGD---IINALCFSPNRYWLCAATGPSIKIWDL 284
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 13/221 (5%)
Query: 267 KHTLKDHTAEV-QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325
+ TLK H V Q T ++AS D T + L+ + G +
Sbjct: 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG 385
DG +G+ + +++WD+ + +F GH V +++FS + + + + D
Sbjct: 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 386 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADW 440
+KLW+ + + + S SE + V F + S + S ++V+ +A
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------ 203
Query: 441 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
NC + TG V PD A G D ++ L
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 31/259 (11%)
Query: 196 HYSKDVIAT--------GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 247
H+ DV+ + G D L+D +G GH+K V SV F ++ ++G
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 248 SADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTV--HATNKYFVTASLDNTWCFYDL 303
S DKT+++W CK+T++D H+ V V +++N V+ D ++L
Sbjct: 124 SRDKTIKLWNTLG----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 363
++ C + + G G + PDG + +G + +WD+ ++ DG
Sbjct: 180 AN--CKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG- 233
Query: 364 GAVTAISFSENGYYLATAAHDGVKLWDLR------KLKNFRSFESSDSETP-TNSVDFDH 416
+ A+ FS N Y+L A +K+WDL +LK SS +E P S+ +
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 293
Query: 417 SGSYLAVASAD--IRVYQV 433
G L D +RV+QV
Sbjct: 294 DGQTLFAGYTDNLVRVWQV 312
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 16/214 (7%)
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284
L GHS V+ V ++G L+GS D T+R+W + HT +V +V +
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT---TRRFVGHTKDVLSVAFSS 115
Query: 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILGTGTS 341
N+ V+ S D T ++ + G+C V D + E + F P+ +I+ G
Sbjct: 116 DNRQIVSGSRDKTIKLWN-TLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGW- 170
Query: 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 400
+ LVK+W++ + GH G + ++ S +G A+ DG LWDL + K+ +
Sbjct: 171 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 230
Query: 401 ESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQV 433
+ D N++ F + +L A+ I+++ +
Sbjct: 231 DGGD---IINALCFSPNRYWLCAATGPSIKIWDL 261
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 13/221 (5%)
Query: 267 KHTLKDHTAEV-QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325
+ TLK H V Q T ++AS D T + L+ + G +
Sbjct: 8 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG 385
DG +G+ + +++WD+ + +F GH V +++FS + + + + D
Sbjct: 68 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 386 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADW 440
+KLW+ + + + S SE + V F + S + S ++V+ +A
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCGWDKLVKVWNLA------ 180
Query: 441 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
NC + TG V PD A G D ++ L
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 152/323 (47%), Gaps = 41/323 (12%)
Query: 168 IDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG 227
ID R +L S + K +++ + + + I +G D ++ +G+ + TL G
Sbjct: 99 IDTNWRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG 157
Query: 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 287
H+ V S + ++ ++GS D+T++VW +E G +C HTL HT+ V+ + +H K
Sbjct: 158 HTGGVWSSQM--RDNIIISGSTDRTLKVWN-AETG--ECIHTLYGHTSTVRCMHLH--EK 210
Query: 288 YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA--AFHPDGLILGTGTSEALV 345
V+ S D T +D+ +G CL + G+ +A DG + +G + +V
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLM---------GHVAAVRCVQYDGRRVVSGAYDFMV 261
Query: 346 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSD 404
K+WD +++ + GH V ++ F +G ++ + + D +++WD+ +
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Query: 405 SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK----ATCV 458
S T + + L +AD ++++ + + + C++T L G K TC+
Sbjct: 320 SLTS----GMELKDNILVSGNADSTVKIWDIKTGQ----CLQT---LQGPNKHQSAVTCL 368
Query: 459 KFGPDAKYIAVGSMDRNLRVFGL 481
+F + ++ S D ++++ L
Sbjct: 369 QFNKN--FVITSSDDGTVKLWDL 389
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 195 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 254
+ Y + +G D ++D + + TL GH+ +V S++F +G ++GS D ++R
Sbjct: 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302
Query: 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 314
VW E GN C HTL H + + + + V+ + D+T +D+ +G CL +
Sbjct: 303 VWD-VETGN--CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ- 356
Query: 315 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-----DGHVGAVTAI 369
G + T F+ + +I T + + VK+WD+K+ + G G V I
Sbjct: 357 -GPNKHQSAVTCLQFNKNFVI--TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI 413
Query: 370 SFSENGYYLATAAHDGVK 387
S A + +G +
Sbjct: 414 RASNTKLVCAVGSRNGTE 431
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 9/153 (5%)
Query: 200 DVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257
+ +A+ D ++ + + VTTL GH +V SV + G+L T S DK+V VW+
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY--DLSSGICLTQVSDA 315
E+ Y+C L HT +V+ V H + + +AS D+T Y + +C A
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC-----A 188
Query: 316 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348
+G S AF P G L + + + V+IW
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 227 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 286
GH + V V + G+ + S D T +W+ ++D +++C TL+ H EV++V +
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSG 117
Query: 287 KYFVTASLDNT---WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343
T S D + W + C++ ++ D + +HP +L + + +
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK-----HVVWHPSQELLASASYDD 172
Query: 344 LVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD-GVKLW 389
VK++ + V A +GH V +++F +G LA+ + D V++W
Sbjct: 173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD 384
A++P G +L + + ++IW + + + K +GH V +++S G YLA+A+ D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 385 GVK-LWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK 437
+W KN FE + E SV + SG+ LA S D + V++V +
Sbjct: 83 ATTCIWK----KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-E 137
Query: 438 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
++ C+ S T V + P + +A S D ++++
Sbjct: 138 DEYECVSVLN--SHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 196 HYSKDVIATGGVDTNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVTEGDLFLTGSADKTV 253
H S++++A+ D L+ V TL GH V S+ F G + S D+TV
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Query: 254 RVWQGSEDGN 263
R+W+ GN
Sbjct: 219 RIWRQYLPGN 228
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 196 HYSKDVIAT--------GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG 247
H+ +DV+ + G D L+D +G GH+K V SV F + ++
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 248 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV--TVHATNKYFVTASLDNTWCFYDLSS 305
S D+T+++W + Y + H V V + + V+AS D T ++LS+
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 306 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA 365
C + + AG G ++ A PDG + +G + +V +WD+ + + +
Sbjct: 551 --CKLRSTLAGHTGY---VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SV 604
Query: 366 VTAISFSENGYYLATAAHDGVKLWDLR 392
+ A+ FS N Y+L A G+K+WDL
Sbjct: 605 IHALCFSPNRYWLCAATEHGIKIWDLE 631
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 15/223 (6%)
Query: 267 KHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325
K T++ HT V A+ N V+AS D + + L+ V+ G
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD- 384
DG +G+ + +++WD+ + + +F GH V +++FS + + +A+ D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 385 GVKLWD-LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKAD 439
+KLW+ L + K S + V F + + SA ++V+ ++
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS----- 549
Query: 440 WNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
NC K L+G TG + V PD A G D + ++ L
Sbjct: 550 -NC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 33/170 (19%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I + D +++ + ++ +TL+GH+ V++V +G L +G D V +W
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW----- 588
Query: 262 GNYDCKHTLKDHTAEVQAVTVHAT----NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT 317
D K ++ E +V +HA N+Y++ A+ ++ +DL S + V D
Sbjct: 589 ---DLAEGKKLYSLEANSV-IHALCFSPNRYWLCAATEHGIKIWDLESK---SIVEDLKV 641
Query: 318 DGRPEGY-----------------TSAAFHPDGLILGTGTSEALVKIWDV 350
D + E TS + DG L +G ++ ++++W +
Sbjct: 642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 193 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
L + Y + VI TG D+ ++D +G+++ TL H + V ++F + +T S D++
Sbjct: 177 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRS 234
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312
+ VW + + + L H A V V +KY V+AS D T ++ S+ + +
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTL 292
Query: 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372
+G G + D L++ +G+S+ +++WD++ A + +GH V I F
Sbjct: 293 -----NGHKRGIACLQYR-DRLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF- 344
Query: 373 ENGYYLATAAHDG-VKLWDL 391
+ + + A+DG +K+WDL
Sbjct: 345 -DNKRIVSGAYDGKIKVWDL 363
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 32/162 (19%)
Query: 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 391
D ++ TG+S++ V++WDV + + H AV + F+ NG + + + +WD+
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDM 240
Query: 392 ---------RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 440
R L R+ N VDFD Y+ AS D I+V+ ++ +
Sbjct: 241 ASPTDITLRRVLVGHRA--------AVNVVDFD--DKYIVSASGDRTIKVWNTSTCEF-- 288
Query: 441 NCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFGL 481
++T L+G + C+++ + + GS D +R++ +
Sbjct: 289 --VRT---LNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDI 323
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 391
+G + +KIWD + GH G+V + + E + T + D V++WD+
Sbjct: 148 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDV 200
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 25/314 (7%)
Query: 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA 249
+ SLD K+ I + D ++++ + Q + H V F G G
Sbjct: 69 VYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL 128
Query: 250 DKTVRVW----QGSEDGNYDCKHTLKDHTAEVQAVT-VHATNKYFVTASLDNTWCFYDLS 304
D ++ Q DGN L H + V +T S D T +D++
Sbjct: 129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT 188
Query: 305 SGICLTQVSDAGTDGRPEGYTSAAFHP-----DGLILGTGTSEALVKIWDVK-SQANVAK 358
+G ++S G++ P G+T+ + + +G+ + V++WD++ + V
Sbjct: 189 TG---QRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244
Query: 359 FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR---KLKNF-RSFESSDSETP-TNSV 412
+ GH G + ++ F +G T + DG +L+D+R +L+ + R + +D+E P SV
Sbjct: 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304
Query: 413 DFDHSGSYL--AVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG 470
F SG L ++ D V+ + N + T + S G+ +C+ D + G
Sbjct: 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLN-LGTLQN-SHEGRISCLGLSSDGSALCTG 362
Query: 471 SMDRNLRVFGLPGN 484
S D+NL+++ G+
Sbjct: 363 SWDKNLKIWAFSGH 376
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 20/205 (9%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
+ATG D ++D + +IV L GH + + S+ + GD ++GS D+TVR+W
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV---SDAGTD 318
C TL KY SLD +D +G + ++ +++GT
Sbjct: 198 ---QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT- 253
Query: 319 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK------------FDGHVGAV 366
G + S F DG + +G+ + VK+W++++ N + + GH V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 367 TAISFSENGYYLATAAHD-GVKLWD 390
+++ ++N Y+ + + D GV WD
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWD 338
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 40/274 (14%)
Query: 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVT 291
+ SV F +G TG+ D+ +R+W + N L+ H ++ ++ + V+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW---DIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 292 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV 350
S D T +DL +G C +S +G T+ A P DG + G+ + V++WD
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLS------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 351 KSQANVAKFD-------GHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFES 402
++ V + D GH +V ++ F+ +G + + + D VKLW+L+ N
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-----K 291
Query: 403 SDSETP---TNSVDF-DHSGSYLAVASADIRVYQVASVKAD----WNCIKTFPDLSGTGK 454
SDS+TP T V + H L+VA+ Y ++ K W+ P L G
Sbjct: 292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 455 ATCV---------KFGPDAKYIAVGSMDRNLRVF 479
V GP+ A GS D R++
Sbjct: 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 268 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-AGTDGRPEGYT- 325
H DHT+ V V +Y T + T Y +S G + ++SD + + PE
Sbjct: 58 HKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 326 -----------SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 374
S F PDG L TG + L++IWD++++ V GH + ++ + +
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 375 GYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 433
G L + + D V++WDLR + + D T D G Y+A S D R +V
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLD-RAVRV 233
Query: 434 ASVKADWNCIKTF-------PDLSGTG---KATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483
W+ F + SGTG V F D + + GS+DR+++++ L
Sbjct: 234 ------WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 484 NDAPSES 490
+ S+S
Sbjct: 288 ANNKSDS 294
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 29/296 (9%)
Query: 201 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW---Q 257
++ATG D L+D + T+ GH+ V +F + +L + SAD T+R+W
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 258 GSEDGNYDCKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 310
+E + + K +D V+ + A + A+ N +D+ + L
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLA 833
Query: 311 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS 370
++ G F P + S+ V++W++ S+ VA GH+ V +
Sbjct: 834 EIH----TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 371 FSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLAVASADI 428
FS +G TA+ D +++W+ +K+ KN S+ V F + + + +A +I
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKN-----SAIVLKQEIDVVFQENET-MVLAVDNI 943
Query: 429 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484
R Q+ + K I P+ + +C P +Y+A G D +++ LP N
Sbjct: 944 RGLQLIAGKT--GQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 993
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 118/306 (38%), Gaps = 54/306 (17%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
IA+ G D +F +G+ + + H +V F ++ T SADK V++W S
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SAT 688
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNK----YFVTASLDNTWCFYDLSSGICLTQVSDAGT 317
G HT +H+ +V H TNK T S D +DL+ C +
Sbjct: 689 GKL--VHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---- 740
Query: 318 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS-----QANVAKF---------DGHV 363
G F PD +L + +++ +++WDV+S NV +F D V
Sbjct: 741 -GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 799
Query: 364 GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423
V S+S +G + AA + V L+D+ + + H+G + +
Sbjct: 800 -IVKCCSWSADGDKIIVAAKNKVLLFDIH---------------TSGLLAEIHTGHHSTI 843
Query: 424 ASADIRVY-QVASVKADWNCIKTFPDLSGTGKATC---------VKFGPDAKYIAVGSMD 473
D Y +A + C++ + S A C V F PD S D
Sbjct: 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903
Query: 474 RNLRVF 479
+ +RV+
Sbjct: 904 QTIRVW 909
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
+ +A G D + + P+ ++ ++ GH K V ++F +G ++ S D ++VW
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW- 1032
Query: 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTD 318
+ G+Y L+ H V+ + ++ ++ S D T +++ +G I GT
Sbjct: 1033 QTGDYV---FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGT- 1087
Query: 319 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 378
S A D + +++ KIW + + + GH G V +FS +G L
Sbjct: 1088 -----VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142
Query: 379 ATAAHDG-VKLWDL 391
AT +G +++W++
Sbjct: 1143 ATGDDNGEIRIWNV 1156
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 5/154 (3%)
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G 385
A F DG + + ++ ++++ ++ + H V +FS + Y+AT + D
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKT 445
VK+WD K +++ + N F + ++L +A+ + C T
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738
Query: 446 FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
T +F PD + +A S D LR++
Sbjct: 739 M--FGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 126/296 (42%), Gaps = 29/296 (9%)
Query: 201 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW---Q 257
++ATG D L+D + T+ GH+ V +F + +L + SAD T+R+W
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 258 GSEDGNYDCKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 310
+E + + K +D V+ + A + A+ N +D+ + L
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLA 840
Query: 311 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS 370
++ G F P + S+ V++W++ S+ VA GH+ V +
Sbjct: 841 EIH----TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 371 FSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLAVASADI 428
FS +G TA+ D +++W+ +K+ KN S+ V F + + + +A +I
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKN-----SAIVLKQEIDVVFQENET-MVLAVDNI 950
Query: 429 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484
R Q+ + K I P+ + +C P +Y+A G D +++ LP N
Sbjct: 951 RGLQLIAGKT--GQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN 1000
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 118/306 (38%), Gaps = 54/306 (17%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
IA+ G D +F +G+ + + H +V F ++ T SADK V++W S
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SAT 695
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNK----YFVTASLDNTWCFYDLSSGICLTQVSDAGT 317
G HT +H+ +V H TNK T S D +DL+ C +
Sbjct: 696 GKL--VHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---- 747
Query: 318 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS-----QANVAKF---------DGHV 363
G F PD +L + +++ +++WDV+S NV +F D V
Sbjct: 748 -GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV 806
Query: 364 GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423
V S+S +G + AA + V L+D+ + + H+G + +
Sbjct: 807 -IVKCCSWSADGDKIIVAAKNKVLLFDIH---------------TSGLLAEIHTGHHSTI 850
Query: 424 ASADIRVY-QVASVKADWNCIKTFPDLSGTGKATC---------VKFGPDAKYIAVGSMD 473
D Y +A + C++ + S A C V F PD S D
Sbjct: 851 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 910
Query: 474 RNLRVF 479
+ +RV+
Sbjct: 911 QTIRVW 916
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
+ +A G D + + P+ ++ ++ GH K V ++F +G ++ S D ++VW
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW- 1039
Query: 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTD 318
+ G+Y L+ H V+ + ++ ++ S D T +++ +G I GT
Sbjct: 1040 QTGDYV---FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGT- 1094
Query: 319 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 378
S A D + +++ KIW + + + GH G V +FS +G L
Sbjct: 1095 -----VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1149
Query: 379 ATAAHDG-VKLWDL 391
AT +G +++W++
Sbjct: 1150 ATGDDNGEIRIWNV 1163
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 5/154 (3%)
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G 385
A F DG + + ++ ++++ ++ + H V +FS + Y+AT + D
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKT 445
VK+WD K +++ + N F + ++L +A+ + C T
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQ--VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 745
Query: 446 FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
T +F PD + +A S D LR++
Sbjct: 746 M--FGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I T DT L+D +GQ TT +GH+ V S+ + LF++G+ D + ++W E
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C+ T H +++ A+ F T S D T +DL + L S D
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381
G TS +F G +L G + +WD GH V+ + +++G +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 382 AHDG-VKLWD 390
+ D +K+W+
Sbjct: 331 SWDSFLKIWN 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 18/270 (6%)
Query: 217 PSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
P G+I TL GH K+ ++ + T+ L L+ S D + +W H +
Sbjct: 39 PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPL 95
Query: 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFH 330
++ V + Y LDN Y+L + +VS AG GY S
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG----HTGYLSCCRF 151
Query: 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389
D + T + + +WD+++ F GH G V ++S + + + A D KLW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL 449
D+R+ ++F +S+ N++ F +G+ A S D ++ ++AD + T+
Sbjct: 212 DVREGMCRQTFTGHESD--INAICFFPNGNAFATGSDDATC-RLFDLRADQE-LMTYSHD 267
Query: 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
+ T V F + + G D N V+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
+ TL+ H A++ A+ ++ ++AS D +D T R +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-----SYTTNKVHAIPLRSSWVMT 102
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKS-QANV---AKFDGHVGAVTAISFSENGYYLATAA 382
A+ P G + G + + I+++K+ + NV + GH G ++ F ++ + ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 383 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQVASVKAD-- 439
LWD+ + +F H+G ++++ A D R++ + A
Sbjct: 163 DTTCALWDIETGQQTTTFTG-------------HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 440 -WN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
W+ C +TF A C F P+ A GS D R+F L
Sbjct: 210 LWDVREGMCRQTFTGHESDINAIC--FFPNGNAFATGSDDATCRLFDL 255
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 242
H GI S+ S ++ G D N ++D L+GH +V+ + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 243 LFLTGSADKTVRVWQ 257
TGS D +++W
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I T DT L+D +GQ TT +GH+ V S+ + LF++G+ D + ++W E
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C+ T H +++ A+ F T S D T +DL + L S D
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381
G TS +F G +L G + +WD GH V+ + +++G +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 382 AHDG-VKLWD 390
+ D +K+W+
Sbjct: 331 SWDSFLKIWN 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 112/270 (41%), Gaps = 18/270 (6%)
Query: 217 PSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
P G+I TL GH K+ ++ + T+ L L+ S D + +W H +
Sbjct: 39 PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPL 95
Query: 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFH 330
++ V + Y LDN Y+L + +VS AG GY S
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG----HTGYLSCCRF 151
Query: 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389
D + T + + +WD+++ F GH G V ++S + + + A D KLW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL 449
D+R+ ++F +S+ N++ F +G+ A S D ++ ++AD + T+
Sbjct: 212 DVREGMCRQTFTGHESD--INAICFFPNGNAFATGSDDATC-RLFDLRADQE-LMTYSHD 267
Query: 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
+ T V F + + G D N V+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
+ TL+ H A++ A+ ++ ++AS D +D T R +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD-----SYTTNKVHAIPLRSSWVMT 102
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKS-QANV---AKFDGHVGAVTAISFSENGYYLATAA 382
A+ P G + G + + I+++K+ + NV + GH G ++ F ++ + ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 383 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQVASVKAD-- 439
LWD+ + +F H+G ++++ A D R++ + A
Sbjct: 163 DTTCALWDIETGQQTTTFTG-------------HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 440 -WN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
W+ C +TF A C F P+ A GS D R+F L
Sbjct: 210 LWDVREGMCRQTFTGHESDINAIC--FFPNGNAFATGSDDATCRLFDL 255
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 242
H GI S+ S ++ G D N ++D L+GH +V+ + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 243 LFLTGSADKTVRVWQ 257
TGS D +++W
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I T DT L+D +GQ TT +GH+ V S+ + LF++G+ D + ++W E
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C+ T H +++ A+ F T S D T +DL + L S D
Sbjct: 228 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 281
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381
G TS +F G +L G + +WD GH V+ + +++G +AT
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 382 AHDG-VKLWD 390
+ D +K+W+
Sbjct: 342 SWDSFLKIWN 351
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 18/270 (6%)
Query: 217 PSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
P G+I TL GH K+ ++ + T+ L ++ S D + +W H +
Sbjct: 50 PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPL 106
Query: 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFH 330
++ V + Y LDN Y+L + +VS AG GY S
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG----HTGYLSCCRF 162
Query: 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389
D + T + + +WD+++ F GH G V ++S + + + A D KLW
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL 449
D+R+ ++F +S+ N++ F +G+ A S D ++ ++AD + T+
Sbjct: 223 DVREGMCRQTFTGHESD--INAICFFPNGNAFATGSDDATC-RLFDLRADQE-LMTYSHD 278
Query: 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
+ T V F + + G D N V+
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
+ TL+ H A++ A+ ++ V+AS D +D T R +
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-----SYTTNKVHAIPLRSSWVMT 113
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKS-QANV---AKFDGHVGAVTAISFSENGYYLATAA 382
A+ P G + G + + I+++K+ + NV + GH G ++ F ++ + ++
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 383 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQVASVKAD-- 439
LWD+ + +F H+G ++++ A D R++ + A
Sbjct: 174 DTTCALWDIETGQQTTTFTG-------------HTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 440 -WN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
W+ C +TF A C F P+ A GS D R+F L
Sbjct: 221 LWDVREGMCRQTFTGHESDINAIC--FFPNGNAFATGSDDATCRLFDL 266
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 242
H GI S+ S ++ G D N ++D L+GH +V+ + +G
Sbjct: 277 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 336
Query: 243 LFLTGSADKTVRVWQ 257
TGS D +++W
Sbjct: 337 AVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I T DT L+D +GQ TT +GH+ V S+ + LF++G+ D + ++W E
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C+ T H +++ A+ F T S D T +DL + L S D
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381
G TS +F G +L G + +WD GH V+ + +++G +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 382 AHDG-VKLWD 390
+ D +K+W+
Sbjct: 331 SWDSFLKIWN 340
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 18/270 (6%)
Query: 217 PSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
P G+I TL GH K+ ++ + T+ L ++ S D + +W H +
Sbjct: 39 PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPL 95
Query: 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFH 330
++ V + Y LDN Y+L + +VS AG GY S
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG----HTGYLSCCRF 151
Query: 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389
D + T + + +WD+++ F GH G V ++S + + + A D KLW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL 449
D+R+ ++F +S+ N++ F +G+ A S D ++ ++AD + T+
Sbjct: 212 DVREGMCRQTFTGHESD--INAICFFPNGNAFATGSDDATC-RLFDLRADQE-LMTYSHD 267
Query: 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
+ T V F + + G D N V+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
+ TL+ H A++ A+ ++ V+AS D +D T R +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-----SYTTNKVHAIPLRSSWVMT 102
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKS-QANV---AKFDGHVGAVTAISFSENGYYLATAA 382
A+ P G + G + + I+++K+ + NV + GH G ++ F ++ + ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 383 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQVASVKAD-- 439
LWD+ + +F H+G ++++ A D R++ + A
Sbjct: 163 DTTCALWDIETGQQTTTFTG-------------HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 440 -WN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
W+ C +TF A C F P+ A GS D R+F L
Sbjct: 210 LWDVREGMCRQTFTGHESDINAIC--FFPNGNAFATGSDDATCRLFDL 255
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 242
H GI S+ S ++ G D N ++D L+GH +V+ + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 243 LFLTGSADKTVRVWQ 257
TGS D +++W
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I T DT L+D +GQ TT +GH+ V S+ + LF++G+ D + ++W E
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321
C+ T H +++ A+ F T S D T +DL + L S D
Sbjct: 217 M---CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH---DNII 270
Query: 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381
G TS +F G +L G + +WD GH V+ + +++G +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 382 AHDG-VKLWD 390
+ D +K+W+
Sbjct: 331 SWDSFLKIWN 340
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 18/270 (6%)
Query: 217 PSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
P G+I TL GH K+ ++ + T+ L ++ S D + +W H +
Sbjct: 39 PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPL 95
Query: 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD--AGTDGRPEGYTSAAFH 330
++ V + Y LDN Y+L + +VS AG GY S
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG----HTGYLSCCRF 151
Query: 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389
D + T + + +WD+++ F GH G V ++S + + + A D KLW
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL 449
D+R+ ++F +S+ N++ F +G+ A S D ++ ++AD + T+
Sbjct: 212 DVREGMCRQTFTGHESD--INAICFFPNGNAFATGSDDATC-RLFDLRADQE-LMTYSHD 267
Query: 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
+ T V F + + G D N V+
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 33/228 (14%)
Query: 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
+ TL+ H A++ A+ ++ V+AS D +D T R +
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD-----SYTTNKVHAIPLRSSWVMT 102
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKS-QANV---AKFDGHVGAVTAISFSENGYYLATAA 382
A+ P G + G + + I+++K+ + NV + GH G ++ F ++ + ++
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 383 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA-DIRVYQVASVKAD-- 439
LWD+ + +F H+G ++++ A D R++ + A
Sbjct: 163 DTTCALWDIETGQQTTTFTG-------------HTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 440 -WN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
W+ C +TF A C F P+ A GS D R+F L
Sbjct: 210 LWDVREGMCRQTFTGHESDINAIC--FFPNGNAFATGSDDATCRLFDL 255
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 242
H GI S+ S ++ G D N ++D L+GH +V+ + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 243 LFLTGSADKTVRVWQ 257
TGS D +++W
Sbjct: 326 AVATGSWDSFLKIWN 340
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 11/192 (5%)
Query: 245 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 304
+TGS D V+VW+ D D + +L+ H V +V + T ++SLD +DL
Sbjct: 52 VTGSLDDLVKVWKW-RDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 305 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 364
+G + + DAG P + AF PD L TGT V I+ V+S D
Sbjct: 111 NGKQIKSI-DAG----PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 165
Query: 365 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423
+ +I++S +G YLA+ A DG + ++D+ K + E P S+ F L
Sbjct: 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG--HAMPIRSLTFSPDSQLLVT 223
Query: 424 ASAD--IRVYQV 433
AS D I++Y V
Sbjct: 224 ASDDGYIKIYDV 235
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 112/246 (45%), Gaps = 13/246 (5%)
Query: 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS 248
G+VS+DI ++ + A+ +D + L+D +G+ + ++ ++ F + TG+
Sbjct: 82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 249 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 308
V ++ G E G +++L + ++ KY + ++D +D+++G
Sbjct: 142 HVGKVNIF-GVESGKK--EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198
Query: 309 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA 368
L + +G S F PD +L T + + +KI+DV+ GH V
Sbjct: 199 LHTL-----EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253
Query: 369 ISFS-ENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427
++F ++ +++++++ VK+WD+ +F D + V ++ +GS + D
Sbjct: 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF--FDHQDQVWGVKYNGNGSKIVSVGDD 311
Query: 428 --IRVY 431
I +Y
Sbjct: 312 QEIHIY 317
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT 239
H L + P I SL ++ T D ++D + TLSGH+ V +V F
Sbjct: 200 HTLEGHAMP-IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Query: 240 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299
+ F++ S+DK+V+VW + G C HT DH +V V + V+ D
Sbjct: 259 DDTHFVSSSSDKSVKVW---DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315
Query: 300 FYD 302
YD
Sbjct: 316 IYD 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 123/284 (43%), Gaps = 44/284 (15%)
Query: 225 LSGHSKKVTSV------KFVTEGDLFLTGSADKTVRVWQGSED---GNYDCKH-TLKDHT 274
L GHS VTS+ K + + ++GS DKTV +W+ E+ G + H L H
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 334
V + + N + +++S D T +DL +G + G S AF PD
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-----GHQSEVYSVAFSPDNR 131
Query: 335 ILGTGTSEALVKIWDVKSQANV--AKFDGHVGAVTAISFS----------ENGYYLATAA 382
+ + +E +K+W++ + A+ + H V+ + +S Y A+
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 383 HDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADW 440
DG +K+W+ NF+ + E+ N + +G Y+A D ++ W
Sbjct: 192 WDGRLKVWN----TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI-------W 240
Query: 441 NCIK-TFPDLSGTGKATC--VKFGPDAKYIAVGSMDRNLRVFGL 481
+ + T+P +T + F P +++AVG+ D+ +++F L
Sbjct: 241 DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNL 283
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 44/220 (20%)
Query: 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267
D L+D +G GH +V SV F + L+ A++ +++W +CK
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG----ECK 152
Query: 268 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 327
F +A +N D S + + + + +P A
Sbjct: 153 ---------------------FSSAEKEN---HSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GV 386
+ DG + K+W+ Q F H V +S S NG Y+AT D +
Sbjct: 189 SVGWDGRL----------KVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 387 KLWDLRKLKN-FRSFESSDSETPTNSVDFDHSGSYLAVAS 425
+WD+ L R F D+ + N + F+ ++AV +
Sbjct: 238 LIWDILNLTYPQREF---DAGSTINQIAFNPKLQWVAVGT 274
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDHTAEVQAV 280
V TLSGHS++V +++ +G +G D V VW + +G + T H V+AV
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 281 TVHATNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLI 335
+ + D +++ SG CL+ V DA + S + P LI
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQ-----VCSILWSPHYKELI 347
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKL 394
G G ++ + IW + A VA+ GH V +++ S +G +A+AA D ++LW +L
Sbjct: 348 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 407
Query: 395 KNFRSFESSDSETPTNSV 412
R E + +S+
Sbjct: 408 DPARRREREKASAAKSSL 425
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 22/243 (9%)
Query: 247 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 306
GS+ KT R D D D+ + V ++ + +LDN+ + SSG
Sbjct: 91 GSSRKTCRYIPSLPDRILDAPEIRNDYYLNL----VDWSSGNVLAVALDNSVYLWSASSG 146
Query: 307 --ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 364
+ L Q+ G E +S A+ +G L GTS A V++WDV+ Q + H
Sbjct: 147 DILQLLQMEQPG-----EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA 201
Query: 365 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423
V ++S+ N Y L++ + G + D+R ++ + S S+ + + G +LA
Sbjct: 202 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE-VCGLRWAPDGRHLAS 258
Query: 424 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV---GSMDRNLRV 478
D + V+ A + W ++TF G KA V + P + G+ DR++R+
Sbjct: 259 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA--VAWCPWQSNVLATGGGTSDRHIRI 316
Query: 479 FGL 481
+ +
Sbjct: 317 WNV 319
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADKTVRV 255
S +V+A +D + L+ SG I+ L + ++SV ++ EG+ G++ V++
Sbjct: 126 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 184
Query: 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--------- 306
W + + H+A V ++ +W Y LSSG
Sbjct: 185 WDVQQQKRL---RNMTSHSARVGSL----------------SWNSYILSSGSRSGHIHHH 225
Query: 307 -ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK----SQANVAKFDG 361
+ + + A G + + PDG L +G ++ LV +W + F
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 362 HVGAVTAISF 371
H GAV A+++
Sbjct: 286 HQGAVKAVAW 295
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 196 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255
HY + + G V++ P+ V L GH+ +V S+ +G + +AD+T+R+
Sbjct: 342 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401
Query: 256 WQGSE 260
W+ E
Sbjct: 402 WRCFE 406
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDHTAEVQAV 280
V TLSGHS++V +++ +G +G D V VW + +G + T H V+AV
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 281 TVHATNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLI 335
+ + D +++ SG CL+ V DA + S + P LI
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQ-----VCSILWSPHYKELI 336
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKL 394
G G ++ + IW + A VA+ GH V +++ S +G +A+AA D ++LW +L
Sbjct: 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396
Query: 395 KNFRSFESSDSETPTNSV 412
R E + +S+
Sbjct: 397 DPARRREREKASAAKSSL 414
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 107/243 (44%), Gaps = 22/243 (9%)
Query: 247 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 306
GS+ KT R D D D+ + V ++ + +LDN+ + SSG
Sbjct: 80 GSSRKTCRYIPSLPDRILDAPEIRNDYYLNL----VDWSSGNVLAVALDNSVYLWSASSG 135
Query: 307 --ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 364
+ L Q+ G E +S A+ +G L GTS A V++WDV+ Q + H
Sbjct: 136 DILQLLQMEQPG-----EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA 190
Query: 365 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423
V ++S+ N Y L++ + G + D+R ++ + S S+ + + G +LA
Sbjct: 191 RVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE-VCGLRWAPDGRHLAS 247
Query: 424 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV---GSMDRNLRV 478
D + V+ A + W ++TF G KA V + P + G+ DR++R+
Sbjct: 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA--VAWCPWQSNVLATGGGTSDRHIRI 305
Query: 479 FGL 481
+ +
Sbjct: 306 WNV 308
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADKTVRV 255
S +V+A +D + L+ SG I+ L + ++SV ++ EG+ G++ V++
Sbjct: 115 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173
Query: 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--------- 306
W + + H+A V ++ +W Y LSSG
Sbjct: 174 WDVQQQKRL---RNMTSHSARVGSL----------------SWNSYILSSGSRSGHIHHH 214
Query: 307 -ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK----SQANVAKFDG 361
+ + + A G + + PDG L +G ++ LV +W + F
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 362 HVGAVTAISF 371
H GAV A+++
Sbjct: 275 HQGAVKAVAW 284
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 196 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255
HY + + G V++ P+ V L GH+ +V S+ +G + +AD+T+R+
Sbjct: 331 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390
Query: 256 WQGSE 260
W+ E
Sbjct: 391 WRCFE 395
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 31/284 (10%)
Query: 169 DALERYTQLASHPLHKTSKPGIVSL--------DIHYSKDVIATGGVDTNAVLFDRPSGQ 220
+ + + L H L + P IV L +++ + A VD + + + +
Sbjct: 548 ENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKK 607
Query: 221 IVTTLSG-----HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA 275
+T LS H+ V F +G + ADKT++V++ +E G + +K H
Sbjct: 608 NITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFK-AETGEKLLE--IKAHED 664
Query: 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335
EV +++ T S+D ++ +G + + +T+++ H L+
Sbjct: 665 EVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHH---LL 721
Query: 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL--- 391
L TG+S+ +K+WD+ + GH +V FS + LA+ + DG +KLWD
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 392 --RKLKNFRSF------ESSDSETPTNSVDFDHSGSYLAVASAD 427
RK N + F D E + G+ + VA+ +
Sbjct: 782 NERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN 825
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 120/305 (39%), Gaps = 47/305 (15%)
Query: 201 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS- 259
++ATG D L+D + T+ GH+ V +F + L + SAD T+++W +
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 260 ----------------EDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFY 301
ED D + +K +A+ + V A NK F+ +
Sbjct: 781 ANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFL----------F 830
Query: 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG 361
D+ + L ++ G F P + S+ V++W+ S++ VA G
Sbjct: 831 DIHTSGLLGEIHT----GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG 886
Query: 362 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420
H+ V + FS +G T++ D ++LW+ +K+ + + VD +
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCK------NSAVMLKQEVDVVFQENE 940
Query: 421 LAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479
+ V + D IR Q+ + + D + +C P +YIA G + + +
Sbjct: 941 VMVLAVDHIRRLQLINGRTGQ------IDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL 994
Query: 480 GLPGN 484
L N
Sbjct: 995 ELVNN 999
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 30/181 (16%)
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ---GSEDGNYDCKHTLKDHTAEVQAVT 281
L GH + V + + L L+ S D TV+VW G+++ ++ C H V +
Sbjct: 1046 LRGHQETVKDFRLLKNSRL-LSWSFDGTVKVWNIITGNKEKDFVC------HQGTVLSCD 1098
Query: 282 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341
+ F + S D T + + L ++ G +AF D +L TG
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSFDLLLPLHELR-----GHNGCVRCSAFSVDSTLLATGDD 1153
Query: 342 EALVKIWDVK-----------SQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD 390
++IW+V S+ A H G VT + FS +G L +A +K W+
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAAT---HGGWVTDLCFSPDGKMLISAG-GYIKWWN 1209
Query: 391 L 391
+
Sbjct: 1210 V 1210
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 13/192 (6%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
IA G + + + + +I + H K V ++F + ++ S D ++VW D
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD 1041
Query: 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ-VSDAGTDGR 320
L+ H V+ + N ++ S D T +++ +G V GT
Sbjct: 1042 KCI----FLRGHQETVKDFRL-LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGT--- 1093
Query: 321 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT 380
S D + +++ KIW + + GH G V +FS + LAT
Sbjct: 1094 ---VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLAT 1150
Query: 381 AAHDG-VKLWDL 391
+G +++W++
Sbjct: 1151 GDDNGEIRIWNV 1162
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV--TEGDLFLTGSADKTVRVWQGS 259
I T D L+D SGQ++ + GH V + G+ F++G DK VW
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 319
C + H ++V +V + + F + S D T YDL + +V+ +
Sbjct: 229 SG---QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKES 282
Query: 320 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 379
G +S F G +L G ++ + +WDV + V+ GH V+ + S +G
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342
Query: 380 TAAHD-GVKLW 389
+ + D +++W
Sbjct: 343 SGSWDHTLRVW 353
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 137/364 (37%), Gaps = 22/364 (6%)
Query: 127 GPAGKKLHTGITPAII-AELTDCNAALSQQRKKR---QVPPALAPIDALERYTQLASHPL 182
G A LH T A + +E L ++R K ++ ++AL ++ L
Sbjct: 1 GMATDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTL 60
Query: 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD 242
K ++ +D K I + D +++D + ++ V + + G
Sbjct: 61 -KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 243 LFLTGSADKTVRVWQGSEDGNYDC---KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299
G D V+ + D N + K ++ HT + A + ++ +TAS D T
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 359
+D+ SG L G D A G +G + +WD++S V F
Sbjct: 180 LWDVESGQLLQSFHGHGADVLC---LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 360 DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418
+ H V ++ + +G A+ + D +L+DLR + + +SVDF SG
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 419 SYLAVASADIRVYQVASVKADWNCIK--TFPDLSG-TGKATCVKFGPDAKYIAVGSMDRN 475
L D + W+ +K L G + + ++ PD GS D
Sbjct: 297 RLLFAGYNDYTINV-------WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 476 LRVF 479
LRV+
Sbjct: 350 LRVW 353
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDHTAEVQAV 280
V TLSGHS++V +++ +G +G D V VW + +G + T H V+AV
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 281 TVHATNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337
+ + D +++ SG CL+ V DA + ++ H LI G
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSP---HYKELISG 258
Query: 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNF 397
G ++ + IW + A VA+ GH V +++ S +G +A+AA D L+ +
Sbjct: 259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD-------ETLRLW 311
Query: 398 RSFE 401
R FE
Sbjct: 312 RCFE 315
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 18/201 (8%)
Query: 289 FVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346
+ +LDN+ + SSG + L Q+ G E +S A+ +G L GTS A V+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPG-----EYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 347 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS 405
+WDV+ Q + H V ++S+ N Y L++ + G + D+R ++ + S S
Sbjct: 93 LWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150
Query: 406 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 463
+ + + G +LA D + V+ A + W ++TF G KA V + P
Sbjct: 151 QE-VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA--VAWCPW 207
Query: 464 AKYIAV---GSMDRNLRVFGL 481
+ G+ DR++R++ +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNV 228
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 196 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255
HY + + G V++ P+ V L GH+ +V S+ +G + +AD+T+R+
Sbjct: 251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310
Query: 256 WQGSE 260
W+ E
Sbjct: 311 WRCFE 315
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADKTVRV 255
S +V+A +D + L+ SG I+ L + ++SV ++ EG+ G++ V++
Sbjct: 35 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 93
Query: 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--------- 306
W + + H+A V ++ +W Y LSSG
Sbjct: 94 WDVQQQKRL---RNMTSHSARVGSL----------------SWNSYILSSGSRSGHIHHH 134
Query: 307 -ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK----SQANVAKFDG 361
+ + + A G + + PDG L +G ++ LV +W + F
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 362 HVGAVTAISF 371
H GAV A+++
Sbjct: 195 HQGAVKAVAW 204
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 33/264 (12%)
Query: 152 LSQQRKKRQVPPALAPIDALERYTQLASHPLHKTSKPGIVSLD--IHYSKDVIATGGVDT 209
LSQQ + R L I L+ + P T + + S+ + + + + TG D
Sbjct: 85 LSQQDRLR--LSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDK 142
Query: 210 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 269
++D + + + LSGH V ++K+ G + ++GS D+TVRVW + C H
Sbjct: 143 MIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGC---CTHV 198
Query: 270 LKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD--------- 318
+ H + V+ + + + KY VT S DNT + L + V D G +
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE---SSVPDHGEEHDYPLVFHT 255
Query: 319 --------GRPEGYTSAA--FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTA 368
G G+ ++ G I+ +G+ + + +WDV + GH + +
Sbjct: 256 PEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315
Query: 369 ISFSENGYYLATAAHD-GVKLWDL 391
+ +A+ D +++WDL
Sbjct: 316 TIYDHERKRCISASMDTTIRIWDL 339
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
+++ +G D +++D + + LSGH+ ++ S + E ++ S D T+R+W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD-L 339
Query: 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD 295
E+G + +TL+ HTA V + + ++K+ V+A+ D
Sbjct: 340 ENG--ELMYTLQGHTALVGLLRL--SDKFLVSAAAD 371
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Query: 221 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 280
V L GH V +V G++ ++GS D T+ VW ++ C + L HT + +
Sbjct: 262 FVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ---MKCLYILSGHTDRIYST 316
Query: 281 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI----- 335
K ++AS+D T +DL +G + + +G+T+ GL+
Sbjct: 317 IYDHERKRCISASMDTTIRIWDLENGELMYTL---------QGHTALV----GLLRLSDK 363
Query: 336 -LGTGTSEALVKIWDVKSQANVAKFDGH---VGAVTAISFSENGYYLATAAHDGVKLWDL 391
L + ++ ++ WD + KF H + A+T S+N L + + + +++L
Sbjct: 364 FLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNL 419
Query: 392 R 392
R
Sbjct: 420 R 420
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328
TL+ H V + + Y +T + D YD + L Q+S G DG A
Sbjct: 116 TLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS--GHDGG----VWAL 168
Query: 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE--NGYYLATAAHDG- 385
+ G IL +G+++ V++WD+K F+GH V + E N Y+ T + D
Sbjct: 169 KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 386 VKLWDLRK 393
+ +W L K
Sbjct: 229 LHVWKLPK 236
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%)
Query: 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNF 397
TG + +++++D ++ + + GH G V A+ ++ G ++ + V++WD++K
Sbjct: 137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196
Query: 398 RSFESSDS 405
FE +S
Sbjct: 197 HVFEGHNS 204
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 29/219 (13%)
Query: 195 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 254
+ + + + TG D ++D + + + LSGH V ++K+ G + ++GS D+TVR
Sbjct: 128 LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVR 186
Query: 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQV 312
VW + C H + H + V+ + + + KY VT S DNT + L + V
Sbjct: 187 VWDIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE---SSV 240
Query: 313 SDAGTD-----------------GRPEGYTSAA--FHPDGLILGTGTSEALVKIWDVKSQ 353
D G + G G+ ++ G I+ +G+ + + +WDV
Sbjct: 241 PDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQX 300
Query: 354 ANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDL 391
+ GH + + + +A+ D +++WDL
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259
+++ +G D +++D + + LSGH+ ++ S + E ++ S D T+R+W
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD-L 339
Query: 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD 295
E+G + +TL+ HTA V + + ++K+ V+A+ D
Sbjct: 340 ENG--ELXYTLQGHTALVGLLRL--SDKFLVSAAAD 371
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328
TL+ H V + + Y +T + D YD + L Q+S G DG A
Sbjct: 116 TLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLS--GHDGG----VWAL 168
Query: 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE--NGYYLATAAHDG- 385
+ G IL +G+++ V++WD+K F+GH V + E N Y+ T + D
Sbjct: 169 KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 386 VKLWDLRK 393
+ +W L K
Sbjct: 229 LHVWKLPK 236
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 31/181 (17%)
Query: 221 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 280
V L GH V +V G++ ++GS D T+ VW ++ C + L HT + +
Sbjct: 262 FVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQX---KCLYILSGHTDRIYST 316
Query: 281 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI----- 335
K ++AS D T +DL +G + +G+T+ GL+
Sbjct: 317 IYDHERKRCISASXDTTIRIWDLENGELXYTL---------QGHTALV----GLLRLSDK 363
Query: 336 -LGTGTSEALVKIWDVKSQANVAKFDGH---VGAVTAISFSENGYYLATAAHDGVKLWDL 391
L + ++ ++ WD + KF H + A+T S+N L + + + +++L
Sbjct: 364 FLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIYNL 419
Query: 392 R 392
R
Sbjct: 420 R 420
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNF 397
TG + ++++D ++ + + GH G V A+ ++ G ++ + V++WD++K
Sbjct: 137 TGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 196
Query: 398 RSFESSDS 405
FE +S
Sbjct: 197 HVFEGHNS 204
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K+ I G D +F+ +G+ V H + S+ L+GS D TV++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT---WCFYDLSSGICLTQVSD 314
+ N+ + T + H V V + + F + LD T W + LT +
Sbjct: 127 --ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 315 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 374
G + Y PD + T + + +KIWD ++++ VA +GH+ V+ F
Sbjct: 185 RGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 375 GYYLATAAHDG-VKLWD 390
+ + + DG +K+W+
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 193 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+D H ++ + T L++ + V ++ V + KF+ + + GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 253 VRVWQGSEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309
+RV+ NY+ + D H ++++ VH T Y ++ S D T ++ + L
Sbjct: 79 IRVF------NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 310 TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV-KSQANVAKFDGHVGAVT 367
Q +G AF+P D +G + VK+W + +S N G V
Sbjct: 133 EQTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 368 AISFS--ENGYYLATAAHD-GVKLWDLR 392
+ + + Y+ TA+ D +K+WD +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K + T D ++D + V TL GH V+ F + ++GS D T+++W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDN 296
S Y + TL + H T K ++ + DN
Sbjct: 258 S---TYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K+ I G D +F+ +G+ V H + S+ L+GS D TV++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT---WCFYDLSSGICLTQVSD 314
+ N+ + T + H V V + + F + LD T W + LT +
Sbjct: 127 --ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 315 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 374
G + Y PD + T + + +KIWD ++++ VA +GH+ V+ F
Sbjct: 185 RGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 375 GYYLATAAHDG-VKLWD 390
+ + + DG +K+W+
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 193 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+D H ++ + T L++ + V ++ V + KF+ + + GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 253 VRVWQGSEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309
+RV+ NY+ + D H ++++ VH T Y ++ S D T ++ + L
Sbjct: 79 IRVF------NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 310 TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV-KSQANVAKFDGHVGAVT 367
Q +G AF+P D +G + VK+W + +S N G V
Sbjct: 133 EQTF----EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 368 AISFS--ENGYYLATAAHD-GVKLWDLR 392
+ + + Y+ TA+ D +K+WD +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K + T D ++D + V TL GH V+ F + ++GS D T+++W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDN 296
S Y + TL + H T K ++ + DN
Sbjct: 258 S---TYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 28/278 (10%)
Query: 215 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
D+ G V + GHS V +G L+ S DKT+R+W + Y H
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 331
++V +V + ++ S D T + + G CL + G + + P
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 332 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387
D + + + ++ +VK W++ A F GH + ++ S +G +A+A DG +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 446
LW+L K + + D S+ F + +LA A+A I+V+ S+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVF---SLDPQYLVDDLR 275
Query: 447 PDLSGTGK-----ATCVKFGPDAKYIAVGSMDRNLRVF 479
P+ +G K A + + D + + G D +RV+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+D +G+ GH V SV + + ++GS DKT++VW C TL
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLG 146
Query: 273 HTAEVQAVTVHATNK------YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
H V V V K ++A D ++L+ Q+ +A G +
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQI-EADFIGHNSNINT 201
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 386
PDG ++ + + + +W++ ++ + V +++FS N Y+LA A G+
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI 260
Query: 387 KLWDL 391
K++ L
Sbjct: 261 KVFSL 265
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I + G D ++ QI GH+ + ++ +G L + D + +W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW----- 223
Query: 262 GNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320
N K + +A+ + ++ + N+Y++ A+ + L + D R
Sbjct: 224 -NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV-------DDLR 275
Query: 321 PE--GYTSA--------AFHPDGLILGTGTSEALVKIWDV 350
PE GY+ A A+ DG L G ++ ++++W V
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 28/278 (10%)
Query: 215 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
D+ G V + GHS V +G L+ S DKT+R+W + Y H
Sbjct: 45 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 101
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 331
++V +V + ++ S D T + + G CL + G + + P
Sbjct: 102 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 155
Query: 332 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387
D + + + ++ +VK W++ A F GH + ++ S +G +A+A DG +
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 446
LW+L K + + D S+ F + +LA A+A I+V+ S+ +
Sbjct: 216 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVF---SLDPQYLVDDLR 269
Query: 447 PDLSGTGK-----ATCVKFGPDAKYIAVGSMDRNLRVF 479
P+ +G K A + + D + + G D +RV+
Sbjct: 270 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+D +G+ GH V SV + + ++GS DKT++VW C TL
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLG 140
Query: 273 HTAEVQAVTVHATNK------YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
H V V V K ++A D ++L+ Q+ +A G +
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQI-EADFIGHNSNINT 195
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 386
PDG ++ + + + +W++ ++ + V +++FS N Y+LA A G+
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI 254
Query: 387 KLWDL 391
K++ L
Sbjct: 255 KVFSL 259
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I + G D ++ QI GH+ + ++ +G L + D + +W
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW----- 217
Query: 262 GNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320
N K + +A+ + ++ + N+Y++ A+ + L + D R
Sbjct: 218 -NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV-------DDLR 269
Query: 321 PE--GYTSA--------AFHPDGLILGTGTSEALVKIWDV 350
PE GY+ A A+ DG L G ++ ++++W V
Sbjct: 270 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 28/278 (10%)
Query: 215 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
D+ G V + GHS V +G L+ S DKT+R+W + Y H
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 331
++V +V + ++ S D T + + G CL + G + + P
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 332 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387
D + + + ++ +VK W++ A F GH + ++ S +G +A+A DG +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 446
LW+L K + + D S+ F + +LA A+A I+V+ S+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVF---SLDPQYLVDDLR 275
Query: 447 PDLSGTGK-----ATCVKFGPDAKYIAVGSMDRNLRVF 479
P+ +G K A + + D + + G D +RV+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+D +G+ GH V SV + + ++GS DKT++VW C TL
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLG 146
Query: 273 HTAEVQAVTVHATNK------YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
H V V V K ++A D ++L+ Q+ +A G +
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQI-EADFIGHNSNINT 201
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 386
PDG ++ + + + +W++ ++ + V +++FS N Y+LA A G+
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI 260
Query: 387 KLWDL 391
K++ L
Sbjct: 261 KVFSL 265
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 28/278 (10%)
Query: 215 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
D+ G V + GHS V +G L+ S DKT+R+W + Y H
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 331
++V +V + ++ S D T + + G CL + G + + P
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 332 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387
D + + + ++ +VK W++ A F GH + ++ S +G +A+A DG +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 446
LW+L K + + D S+ F + +LA A+A I+V+ S+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVF---SLDPQYLVDDLR 275
Query: 447 PDLSGTGK-----ATCVKFGPDAKYIAVGSMDRNLRVF 479
P+ +G K A + + D + + G D +RV+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+D +G+ GH V SV + + ++GS DKT++VW C TL
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLG 146
Query: 273 HTAEVQAVTVHATNK------YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
H V V V K ++A D ++L+ Q+ +A G +
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQI-EADFIGHNSNINT 201
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 386
PDG ++ + + + +W++ ++ + V +++FS N Y+LA A G+
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI 260
Query: 387 KLWDL 391
K++ L
Sbjct: 261 KVFSL 265
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I + G D ++ QI GH+ + ++ +G L + D + +W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW----- 223
Query: 262 GNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320
N K + +A+ + ++ + N+Y++ A+ + L + D R
Sbjct: 224 -NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV-------DDLR 275
Query: 321 PE--GYTSA--------AFHPDGLILGTGTSEALVKIWDV 350
PE GY+ A A+ DG L G ++ ++++W V
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K+ I G D +F+ +G+ V H + S+ L+GS D TV++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT---WCFYDLSSGICLTQVSD 314
+ N+ + T + H V V + + F + LD T W + LT +
Sbjct: 127 --ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 315 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 374
G + Y PD + T + + +KIWD ++++ VA +GH+ V+ F
Sbjct: 185 RGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 375 GYYLATAAHDG-VKLWD 390
+ + + DG +K+W+
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K + T D ++D + V TL GH V+ F + ++GS D T+++W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDN 296
S Y + TL + H T K ++ + DN
Sbjct: 258 S---TYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258
K+ I G D +F+ +G+ V H + S+ L+GS D TV++W
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 259 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT---WCFYDLSSGICLTQVSD 314
+ N+ + T + H V V + + F + LD T W + LT +
Sbjct: 127 --ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 315 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 374
G + Y PD + T + + +KIWD ++++ VA +GH+ V+ F
Sbjct: 185 RGVN-----YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 375 GYYLATAAHDG-VKLWD 390
+ + + DG +K+W+
Sbjct: 240 LPIIISGSEDGTLKIWN 256
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 127/311 (40%), Gaps = 34/311 (10%)
Query: 193 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+D H ++ + T L++ + V ++ V + KF+ + + GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 253 VRVWQGSEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309
+RV+ NY+ + D H ++++ VH T Y ++ S D T ++ + L
Sbjct: 79 IRVF------NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 310 TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV-KSQANVAKFDGHVGAVT 367
Q +G AF+P D +G + VK+W + +S N G V
Sbjct: 133 EQT----FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 368 AISFS--ENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424
+ + + Y+ TA+ D +K+WD + + E S S H + ++
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV---SFAVFHPTLPIIIS 245
Query: 425 SAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK--YIAVGSMDRNLRVF 479
++ ++++ ++ K + KT G ++ C+ P + YIA G D V
Sbjct: 246 GSEDGTLKIWNSSTYKVE----KTLN--VGLERSWCIATHPTGRKNYIASG-FDNGFTVL 298
Query: 480 GLPGNDAPSES 490
L GND P+ S
Sbjct: 299 SL-GNDEPTLS 308
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 28/278 (10%)
Query: 215 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
D+ G V + GHS V +G L+ S DKT+R+W + Y H
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 331
++V +V + ++ S D T + + G CL + G + + P
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 332 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387
D + + + ++ +VK W++ A F GH + ++ S +G +A+A DG +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 446
LW+L K + + D S+ F + +LA A+A I+V+ S+ +
Sbjct: 222 LWNLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVF---SLDPQYLVDDLR 275
Query: 447 PDLSGTGK-----ATCVKFGPDAKYIAVGSMDRNLRVF 479
P+ +G A + + D + + G D +RV+
Sbjct: 276 PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 24/235 (10%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+D +G+ GH V SV + + ++GS DKT++VW C TL
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLG 146
Query: 273 HTAEVQAVTVHATNK------YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
H V V V K ++A D ++L+ Q+ +A G +
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ----FQI-EADFIGHNSNINT 201
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 386
PDG ++ + + + +W++ ++ + V +++FS N Y+LA A G+
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGI 260
Query: 387 KLWDL------RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433
K++ L L+ + S+ +E S+ + G L D IRV+QV
Sbjct: 261 KVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 24/160 (15%)
Query: 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261
I + G D ++ QI GH+ + ++ +G L + D + +W
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW----- 223
Query: 262 GNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320
N K + +A+ + ++ + N+Y++ A+ + L + D R
Sbjct: 224 -NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV-------DDLR 275
Query: 321 PE--GYTSA--------AFHPDGLILGTGTSEALVKIWDV 350
PE GY++A A+ DG L G ++ ++++W V
Sbjct: 276 PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 28/278 (10%)
Query: 215 DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
D+ G V + GHS V +G L+ S DKT+R+W + Y H
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY---QRFVGHK 107
Query: 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--- 331
++V +V + ++ S D T + + G CL + G + + P
Sbjct: 108 SDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLL-----GHNDWVSQVRVVPNEK 161
Query: 332 ---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387
D + + + ++ VK W++ A F GH + ++ S +G +A+A DG +
Sbjct: 162 ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIX 221
Query: 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTF 446
LW+L K + + D S+ F + +LA A+A I+V+ S+ +
Sbjct: 222 LWNLAAKKAXYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVF---SLDPQYLVDDLR 275
Query: 447 PDLSGTGK-----ATCVKFGPDAKYIAVGSMDRNLRVF 479
P+ +G K A + + D + + G D +RV+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+D +G+ GH V SV + ++GS DKT++VW C TL
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG----QCLATLLG 146
Query: 273 HTAEVQAVTVHATNK------YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326
H V V V K ++A D ++L+ Q+ +A G +
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ----FQI-EADFIGHNSNINT 201
Query: 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGV 386
PDG ++ + + + +W++ ++ V +++FS N Y+LA A G+
Sbjct: 202 LTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYWLAAATATGI 260
Query: 387 KLWDL 391
K++ L
Sbjct: 261 KVFSL 265
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 31/241 (12%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L+ + S L+GH + +T VK+ EGDL + S D + VW N + TL
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL---NGERLGTLDG 72
Query: 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 332
HT + ++ V KY VT S D + +D+S+G C+ T P F P
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV------ATWKSPVPVKRVEFSPC 126
Query: 333 G-----LILGTGTSEALVKIWDVK-----------SQANVAKFDGHVG--AVTAISFSEN 374
G ++ + + I++++ S+ + K H G A T +S
Sbjct: 127 GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186
Query: 375 GYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASADIRVYQ 432
G Y+ DG + +D+ N+ +S D E + + F +Y +S D +
Sbjct: 187 GKYIIAGHKDGKISKYDVS--NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244
Query: 433 V 433
V
Sbjct: 245 V 245
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 26/235 (11%)
Query: 195 IHYSK--DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252
+ Y+K D++ + D++A ++ +G+ + TL GH+ + S+ +TGSAD +
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW------CFYDL--- 303
+++W S N C T K V+ V YF+ A LDN Y++
Sbjct: 98 IKLWDVS---NGQCVATWKS-PVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERD 152
Query: 304 SSGICLTQVSDAG-----TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VA 357
S+ LT+VS+ T + T A + G + G + + +DV + V
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD 212
Query: 358 KFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNS 411
D H +++ + FS + Y T++ D L D+ L+ + +E ++ P N+
Sbjct: 213 SIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNT 264
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 31/248 (12%)
Query: 204 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG 262
TG VD N V + GH+ V + + D + +GS D TV VW+ + G
Sbjct: 67 TGRVDKN-----------VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
Query: 263 NY----DCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT 317
+ TL+ HT V V H T ++A DN +D+ +G V G
Sbjct: 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGP 172
Query: 318 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGA--VTAISFSEN 374
D P+ S + DG ++ T + V++ + + VA+ D H G V A+ SE
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE- 231
Query: 375 GYYLATA----AHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS---AD 427
G L T + V LWD + L+ S + D+ + FD + + + +
Sbjct: 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291
Query: 428 IRVYQVAS 435
IR +++ S
Sbjct: 292 IRYFEITS 299
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 193 LDIHY---SKDVIATGGVDTNAVLFDRPSGQI-------VTTLSGHSKKVTSVKF-VTEG 241
LDI + + +VIA+G D ++++ P G + V TL GH+K+V V + T
Sbjct: 85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ 144
Query: 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWC 299
++ L+ D + VW + G TL H + +V T+ D
Sbjct: 145 NVLLSAGCDNVILVW---DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG---TSEALVKIWDVK 351
+ G + + RP A F +G IL TG SE V +WD K
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRP---VHAVFVSEGKILTTGFSRMSERQVALWDTK 253
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 31/248 (12%)
Query: 204 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG 262
TG VD N V + GH+ V + + D + +GS D TV VW+ + G
Sbjct: 67 TGRVDKN-----------VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGG 115
Query: 263 NY----DCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT 317
+ TL+ HT V V H T ++A DN +D+ +G + + G
Sbjct: 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL---GP 172
Query: 318 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGA--VTAISFSEN 374
D P+ S + DG ++ T + V++ + + VA+ D H G V A+ SE
Sbjct: 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE- 231
Query: 375 GYYLATA----AHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS---AD 427
G L T + V LWD + L+ S + D+ + FD + + + +
Sbjct: 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291
Query: 428 IRVYQVAS 435
IR +++ S
Sbjct: 292 IRYFEITS 299
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 193 LDIHY---SKDVIATGGVDTNAVLFDRPSGQI-------VTTLSGHSKKVTSVKF-VTEG 241
LDI + + +VIA+G D ++++ P G + V TL GH+K+V V + T
Sbjct: 85 LDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ 144
Query: 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWC 299
++ L+ D + VW + G TL H + +V T+ D
Sbjct: 145 NVLLSAGXDNVILVW---DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG---TSEALVKIWDVK 351
+ G + + RP A F +G IL TG SE V +WD K
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRP---VHAVFVSEGKILTTGFSRMSERQVALWDTK 253
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 317 TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376
T P Y + A PD + + S+ + +WD+ +Q V +F GH + I S +G
Sbjct: 138 TSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 377 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA--SADIRVYQV 433
L T D V+ WDLR+ R + D + S+ + +G +LAV S+++ V V
Sbjct: 197 KLWTGGLDNTVRSWDLRE---GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF 244
+S P +L I V + D N ++D + +V GH+ + + +G
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 245 LTGSADKTVRVWQGSE 260
TG D TVR W E
Sbjct: 199 WTGGLDNTVRSWDLRE 214
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 24/223 (10%)
Query: 184 KTSKPGIVSLDIHYSKDVIATGGVDTN----AVLFDRPSGQIVTTLSGHSKKVTSVKFVT 239
K K I S D +S+ ++ATG D +V +D + V + H K + SV +
Sbjct: 11 KLYKEKIWSFD--FSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP 68
Query: 240 EGDLFLTGSADKTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD 295
L GS D TV +W E + D ++ H EV+ V Y T S D
Sbjct: 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD 128
Query: 296 NT-WCFYDLSSG---ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW-DV 350
+ W + SG C++ + + D + +HP +L + + + V+IW D
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKH-----VIWHPSEALLASSSYDDTVRIWKDY 183
Query: 351 KSQAN-VAKFDGHVGAVTAISF--SENGYYLATAAHDG-VKLW 389
VA +GH G V + F +E + L + + D V++W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 326 SAAFHPDGLILGTGTSEALVKIWDVKSQAN-------VAKFDGHVGAVTAISFSENGYYL 378
S A+ P +L G+ ++ V IW + A+ +A +GH V +++S +GYYL
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 379 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDH-----SGSYLAVASADIRVYQV 433
AT + D +W ++ +E S +S D H S + LA +S D V
Sbjct: 123 ATCSRDK-SVWIWETDESGEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 434 ASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485
DW C+ GT ++ + GS D +RV+ G+D
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 55/144 (38%), Gaps = 10/144 (6%)
Query: 220 QIVTTLSGHSKKVTSVKF-VTEGDLFL-TGSADKTVRVWQGSEDGNYD-----CKHTLKD 272
+ V L+GH V S F TEG L +GS D TVRVW+ D D C+ L D
Sbjct: 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247
Query: 273 -HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331
H +V V N + D Y+ G A G E
Sbjct: 248 VHKRQVYNVA-WGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL 306
Query: 332 DG-LILGTGTSEALVKIWDVKSQA 354
+G IL TG + +V W ++ A
Sbjct: 307 NGKTILATGGDDGIVNFWSLEKAA 330
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSE 342
N Y ++AS D+T C +D+++ +V DA G A+H + G+ +
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 343 ALVKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK- 395
+ IWD ++ N +K D H V +SF+ + + LAT + D V LWDLR LK
Sbjct: 256 QKLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 396 NFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVY 431
SFES E V + H+ + LA + D R++
Sbjct: 315 KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLH 349
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 225 LSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 283
+GH+ V V + + LF + + D+ + +W + HT+ HTAEV ++ +
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 284 ATNKYFV-TASLDNTWCFYDL 303
+++ + T S D T +DL
Sbjct: 289 PYSEFILATGSADKTVALWDL 309
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 197 YSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVR 254
YS+ ++ATG D L+D + ++ + + H ++ V++ + L S D+ +
Sbjct: 290 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 349
Query: 255 VW-----------QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYD 302
VW + +EDG + HTA++ + + + + + S DN +
Sbjct: 350 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
Query: 303 LSSGI 307
++ +
Sbjct: 410 MAENV 414
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSE 342
N Y ++AS D+T C +D+++ +V DA G A+H + G+ +
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 343 ALVKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK- 395
+ IWD ++ N +K D H V +SF+ + + LAT + D V LWDLR LK
Sbjct: 254 QKLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 396 NFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVY 431
SFES E V + H+ + LA + D R++
Sbjct: 313 KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLH 347
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 225 LSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 283
+GH+ V V + + LF + + D+ + +W + HT+ HTAEV ++ +
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 284 ATNKYFV-TASLDNTWCFYDL 303
+++ + T S D T +DL
Sbjct: 287 PYSEFILATGSADKTVALWDL 307
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 197 YSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVR 254
YS+ ++ATG D L+D + ++ + + H ++ V++ + L S D+ +
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347
Query: 255 VW-----------QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYD 302
VW + +EDG + HTA++ + + + + + S DN +
Sbjct: 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
Query: 303 LSSGI 307
++ +
Sbjct: 408 MAENV 412
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSE 342
N Y ++AS D+T C +D+++ +V DA G A+H + G+ +
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 343 ALVKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK- 395
+ IWD ++ N +K D H V +SF+ + + LAT + D V LWDLR LK
Sbjct: 258 QKLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 396 NFRSFESSDSETPTNSVDFD-HSGSYLAVASADIRVY 431
SFES E V + H+ + LA + D R++
Sbjct: 317 KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLH 351
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 225 LSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 283
+GH+ V V + + LF + + D+ + +W + HT+ HTAEV ++ +
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 284 ATNKYFV-TASLDNTWCFYDL 303
+++ + T S D T +DL
Sbjct: 291 PYSEFILATGSADKTVALWDL 311
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 197 YSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVR 254
YS+ ++ATG D L+D + ++ + + H ++ V++ + L S D+ +
Sbjct: 292 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 351
Query: 255 VW-----------QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYD 302
VW + +EDG + HTA++ + + + + + S DN +
Sbjct: 352 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
Query: 303 LSSGI 307
++ +
Sbjct: 412 MAENV 416
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 201 VIATGGVDTNAVLFDR--------PSGQIVT--TLSGHSKKVTSVKFVTE--GDLFLTGS 248
+IAT ++ ++FD PSG+ L GH K+ + + + G L L+ S
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL-LSAS 199
Query: 249 ADKTVRVWQ---GSEDGNY-DCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDL 303
D TV +W G ++G D K H+A V+ V H ++ F + + D +D
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Query: 304 SSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS-QANVAKFDG 361
S T D +F+P IL TG+++ V +WD+++ + + F+
Sbjct: 260 RSNT--TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 362 HVGAVTAISFS-ENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETP 408
H + + +S N LA++ D + +WDL K+ +S E ++ P
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 225 LSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCK-HTLKDHTAEVQAVTV 282
+ H+ +V + F + L TGSADKTV +W N K HT + H E+ V
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHW 327
Query: 283 HATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPE------GYTSA----AFHP 331
N+ + +S D +DLS I Q ++ DG PE G+T+ +++P
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSK-IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP 386
Query: 332 -DGLILGTGTSEALVKIWDV 350
+ ++ + + + +++IW +
Sbjct: 387 NEPWVICSVSEDNIMQIWQM 406
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 197 YSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVR 254
YS+ ++ATG D L+D + ++ + T H ++ V + + L S D+ +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 255 VW-----------QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYD 302
VW + +EDG + HTA++ + + + + + S DN +
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
Query: 303 LSSGI 307
++ I
Sbjct: 406 MAENI 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 288 YFVTASLDNTWCFYDLSSGICLTQVSDAGT--DGRPEGYTSAAFH-PDGLILGTGTSEAL 344
+ ++AS D+T C +D+S+ +V DA T G ++H + G+ +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 345 VKIWDVKSQANVAK----FDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLK-NF 397
+ IWD +S N +K D H V +SF+ + + LAT + D V LWDLR LK
Sbjct: 252 LMIWDTRSN-NTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 398 RSFESSDSE 406
SFES E
Sbjct: 311 HSFESHKDE 319
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 219 GQIV---TTLSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274
G++V T +GH+ V V + + LF + + D+ + +W + H++ HT
Sbjct: 214 GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 275 AEVQAVTVHATNKYFV-TASLDNTWCFYDL 303
AEV ++ + +++ + T S D T +DL
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDL 303
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 197 YSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVR 254
YS+ ++ATG D L+D + ++ + + H ++ V++ + L S D+ +
Sbjct: 284 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 255 VW-----------QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYD 302
VW + +EDG + HTA++ + + + + + S DN +
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 303 LSSGICLTQVSDAGTDGRPEGYTS 326
++ I + + D PEG S
Sbjct: 404 MAENIYNDEDPEGSVD--PEGQGS 425
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/283 (17%), Positives = 109/283 (38%), Gaps = 81/283 (28%)
Query: 190 IVSLDIHYSKDVIATGGVDTNAVLFD-----------RPSGQIVTTLSGHS--------- 229
I +++ ++S +++ATG V+F R + +T H
Sbjct: 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90
Query: 230 ---KKVTSVKFVTEGDL--FLTGSADKTVRVWQGSE-------------DGNYDCKHTL- 270
+K+ ++++ + + FL + DKT+++W+ SE DG Y T+
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT 150
Query: 271 -----------------------KDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDLSS 305
HT + ++++++ + +++A N W
Sbjct: 151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDR 210
Query: 306 GICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQA---------- 354
+ + A + E T+A FHP+ +S+ +++ D+++ A
Sbjct: 211 SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270
Query: 355 ------NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 391
N + F + +++ + FS +G Y+ T + VK+WDL
Sbjct: 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDL 313
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 24/229 (10%)
Query: 201 VIATGGVDTNAVLFDR--------PSGQIVTTLS--GHSKKVTSVKFVTE--GDLFLTGS 248
+IAT ++ ++FD PSG+ L GH K+ + + + G L L+ S
Sbjct: 141 IIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHL-LSAS 199
Query: 249 ADKTVRVWQ---GSEDGNY-DCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDL 303
D TV +W G ++G D K H+A V+ V H ++ F + + D +D
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Query: 304 SSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS-QANVAKFDG 361
S T D +F+P IL TG+++ V +WD+++ + + F+
Sbjct: 260 RSNT--TSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 362 HVGAVTAISFS-ENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETP 408
H + + +S N LA++ D + +WDL K+ +S E ++ P
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 225 LSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCK-HTLKDHTAEVQAVTV 282
+ H+ +V + F + L TGSADKTV +W N K HT + H E+ V
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHW 327
Query: 283 HATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPE 322
N+ + +S D +DLS I Q ++ DG PE
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSK-IGEEQSAEDAEDGPPE 367
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 197 YSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVR 254
YS+ ++ATG D L+D + ++ + T H ++ V + + L S D+ +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 255 VWQGSEDG 262
VW S+ G
Sbjct: 346 VWDLSKIG 353
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 135/330 (40%), Gaps = 51/330 (15%)
Query: 187 KPGIVSLDIHYSKD---VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---E 240
K G D+ +S D + T G D FD SG+ + + + V F +
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 241 GDLFLTGSADKTVRVWQGSEDGNYDC--KHTLKDHTAEVQAVTVHAT-NKYFVTASLDNT 297
F T AD T+RVW + C K TL Q V V AT N ++ SLD T
Sbjct: 264 SQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 298 WCFYDLSSGICLTQVS---------------DAGTDGRPEGYTSAAFHPD--GLILGTGT 340
FY+L L +S DGR ++S++ H D LI+
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 380
Query: 341 SEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN 396
S+A + + S + K +G G+ ++ + N + A +D DL L++
Sbjct: 381 SKA--QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD----DLLILQS 434
Query: 397 FRS--FESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSG 451
F +S +P ++V S +Y+AV + I+V++++ ++ ++ +KT
Sbjct: 435 FTGDIIKSVRLNSPGSAVSL--SQNYVAVGLEEGNTIQVFKLSDLEVSFD-LKT----PL 487
Query: 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
K + + P YIA G + + ++ L
Sbjct: 488 RAKPSYISISPSETYIAAGDVMGKILLYDL 517
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 199 KDVIATGGVDTNAVLFD--RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256
+D++ATG +DTN ++ RP +I+ L+ H V ++ + T L +G AD ++ W
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPSTLVSSG-ADACIKRW 610
Query: 257 Q 257
Sbjct: 611 N 611
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 16/177 (9%)
Query: 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSA 249
+S D + + G D V SG + +SGHS+++ + + +T
Sbjct: 122 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 181
Query: 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH------ATNKYFVTASLDNTWCFYDL 303
D +V +QG K + D T Q V + ++ +T D +D
Sbjct: 182 DGSVVFYQGPP-----FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236
Query: 304 SSGICLTQVSDAGTDGRP-EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 359
SG L + D D P +G A D T ++A +++WDV + V K+
Sbjct: 237 KSGEFLKYIED---DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Query: 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384
T F P G L + + + +KIW VK +N GH VT I+ + G + +A+ D
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 385 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 443
G ++LW+ +F E P + V+ S D ++++++
Sbjct: 200 GTIRLWECGTGTTIHTFNR--KENPHDGVN-----SIALFVGTDRQLHEIS--------- 243
Query: 444 KTFPDLSGTGKATCVKFGPDAKYIAVG 470
T K ++FG KY+ G
Sbjct: 244 --------TSKKNNLEFGTYGKYVIAG 262
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 287
H ++T +KF G+ ++ S D +++W + N TL H A V + + +
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAIIDRGR 191
Query: 288 YFVTASLDNTWCFYDLSSGICL 309
++ASLD T ++ +G +
Sbjct: 192 NVLSASLDGTIRLWECGTGTTI 213
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 224 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257
TL GH VT + + G L+ S D T+R+W+
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Query: 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384
T F P G L + + + +KIW VK +N GH VT I+ + G + +A+ D
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 385 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCI 443
G ++LW+ +F E P + V+ S D ++++++
Sbjct: 203 GTIRLWECGTGTTIHTFNR--KENPHDGVN-----SIALFVGTDRQLHEIS--------- 246
Query: 444 KTFPDLSGTGKATCVKFGPDAKYIAVG 470
T K ++FG KY+ G
Sbjct: 247 --------TSKKNNLEFGTYGKYVIAG 265
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 287
H ++T +KF G+ ++ S D +++W + N TL H A V + + +
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAIIDRGR 194
Query: 288 YFVTASLDNTWCFYDLSSGICL 309
++ASLD T ++ +G +
Sbjct: 195 NVLSASLDGTIRLWECGTGTTI 216
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 224 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257
TL GH VT + + G L+ S D T+R+W+
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 135/330 (40%), Gaps = 51/330 (15%)
Query: 187 KPGIVSLDIHYSKD---VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---E 240
K G D+ +S D + T G D FD SG+ + + + V F +
Sbjct: 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 241 GDLFLTGSADKTVRVWQGSEDGNYDC--KHTLKDHTAEVQAVTVHAT-NKYFVTASLDNT 297
F T AD T+RVW + C K TL Q V V AT N ++ SLD T
Sbjct: 264 SQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 298 WCFYDLSSGICLTQVS---------------DAGTDGRPEGYTSAAFHPD--GLILGTGT 340
FY+L L +S DGR ++S++ H D LI+
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIXEWSSSSXHQDHSNLIVSLDN 380
Query: 341 SEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN 396
S+A + + S + K +G G+ ++ + N + A +D DL L++
Sbjct: 381 SKA--QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD----DLLILQS 434
Query: 397 FRS--FESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSG 451
F +S +P ++V S +Y+AV + I+V++++ ++ ++ +KT
Sbjct: 435 FTGDIIKSVRLNSPGSAVSL--SQNYVAVGLEEGNTIQVFKLSDLEVSFD-LKT----PL 487
Query: 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481
K + + P YIA G + + ++ L
Sbjct: 488 RAKPSYISISPSETYIAAGDVXGKILLYDL 517
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 199 KDVIATGGVDTNAVLFD--RPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256
+D++ATG +DTN ++ RP +I+ L+ H V ++ + T L +G AD ++ W
Sbjct: 553 EDLVATGSLDTNIFIYSVKRPX-KIIKALNAHKDGVNNLLWETPSTLVSSG-ADACIKRW 610
Query: 257 Q 257
Sbjct: 611 N 611
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 30/184 (16%)
Query: 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSV--------KFVTEGD 242
+S D + + G D V SG + +SGHS+++ + + T GD
Sbjct: 122 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGD 181
Query: 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH------ATNKYFVTASLDN 296
D +V +QG K + D T Q V + ++ +T D
Sbjct: 182 -------DGSVVFYQGPP-----FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229
Query: 297 TWCFYDLSSGICLTQVSDAGTDGRP-EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN 355
+D SG L + D D P +G A D T ++A +++WDV +
Sbjct: 230 KISCFDGKSGEFLKYIED---DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 286
Query: 356 VAKF 359
V K+
Sbjct: 287 VQKW 290
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TN 286
H V++V ++ G ++GS D ++VW ++ + + H A+V V +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS---SYRAHAAQVTCVAASPHKD 182
Query: 287 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALV 345
F++ S DN +D C S G TS A+HP + G V
Sbjct: 183 SVFLSCSEDNRILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239
Query: 346 KIWDVKSQANVAKFDGHVGAVTAISFSENGY-YLATAAHDG------VKLWDLRKLKNFR 398
+ D KS + V H VT + FS + +LA+ + D L +L + + R
Sbjct: 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR 299
Query: 399 SFESSDSETPTN-----SVDFDH 416
F + +P N +V +DH
Sbjct: 300 DFVRDATWSPLNHSLLTTVGWDH 322
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGS 248
SLD+ S ++ TG N +L + G+ + L H KKVT V D FL T S
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270
Query: 249 ADKTVRVW 256
D+TV++W
Sbjct: 271 VDQTVKIW 278
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 376 YYLATAAHDG-VKLWDLRKLKNFRSF-ESSDSETPTNSVDFDHSGSYLAVA--SADIRVY 431
++LATA+ D VK+WDLR+++ SF S P N+ F G+ L ++IRVY
Sbjct: 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 432 QVASVKADWNC 442
+ W+C
Sbjct: 324 SA----SQWDC 330
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGS 248
SLD+ S ++ TG N +L + G+ + L H KKVT V D FL T S
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270
Query: 249 ADKTVRVW 256
D+TV++W
Sbjct: 271 VDQTVKIW 278
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 376 YYLATAAHDG-VKLWDLRKLKNFRSF-ESSDSETPTNSVDFDHSGSYLAVA--SADIRVY 431
++LATA+ D VK+WDLR+++ SF S P N+ F G+ L ++IRVY
Sbjct: 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Query: 432 QVASVKADWNC 442
+ W+C
Sbjct: 324 SA----SQWDC 330
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGS 248
SLD+ S ++ TG N +L + G+ + L H KKVT V D FL T S
Sbjct: 213 FCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALNPCCDWFLATAS 271
Query: 249 ADKTVRVW 256
D+TV++W
Sbjct: 272 VDQTVKIW 279
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 376 YYLATAAHD-GVKLWDLRKLKNFRSF-ESSDSETPTNSVDFDHSGSYLAVA--SADIRVY 431
++LATA+ D VK+WDLR+++ SF S P N+ F G+ L ++IRVY
Sbjct: 265 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Query: 432 QVASVKADWNC 442
+ W+C
Sbjct: 325 SA----SQWDC 331
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 240 EGDLFLTGSADKTVRVW---QGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKY----- 288
EG L+G +D + ++ S Y CK +DH +V +V Y
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH-PDVHRYSVETVQWYPHDTG 113
Query: 289 -FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEAL 344
F ++S D T +D ++ + A E S P ++ GT
Sbjct: 114 MFTSSSFDKTLKVWDTNT------LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPK 167
Query: 345 VKIWDVKSQANVAKFDGHVGAVTAISFS-ENGYYLATAAHDG-VKLWDLRK 393
V++ D+KS + GH + A+S+S Y LATA+ D VKLWD+R+
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 49/240 (20%)
Query: 189 GIVSLDIH-YSKDVIATGGVDTNAVLFD--RPSGQIVTTLSG-----------HSKKVTS 234
GI +LDI + +GG D VL+D S Q T H V +
Sbjct: 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104
Query: 235 VKFVT-EGDLFLTGSADKTVRVW-----QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY 288
V++ + +F + S DKT++VW Q ++ N++ T+ H + V+
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE--ETVYSH--HMSPVSTKHCLVA 160
Query: 289 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKI 347
T C DL SG C + G + + ++ P IL T ++++ VK+
Sbjct: 161 VGTRGPKVQLC--DLKSGSCSHILQ-----GHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 348 WDV----------------KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 390
WDV KSQA + H G V + F+ +G +L T D ++LW+
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|3LRV|A Chain A, The Prp19 Wd40 Domain Contains A Conserved Protein
Interaction Region Essential For Its Function
Length = 343
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 324 YTSAAFHPDGLILGTGTSEALVKIWDVKS--QANVAKFDGHVGAVTAISFSENGYYLATA 381
Y+S H D L+L + + ++ ++++ S QA+ + + F++NGY++
Sbjct: 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE 232
Query: 382 AHDGVKLWDLRK---LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVAS 435
V +DLRK + ++ + +T T + D D SG + S + + +Y+
Sbjct: 233 CDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292
Query: 436 VKADW 440
+W
Sbjct: 293 KTKNW 297
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 170 ALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-- 227
A+ + +L P+ S +S D K +A GG D+ ++ + SG V+ +
Sbjct: 435 AIYSHGKLTEVPISYNSSCVALSND----KQFVAVGGQDSKVHVY-KLSGASVSEVKTIV 489
Query: 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT--LKDHTAEVQAVTVHAT 285
H ++TSV F G + + D++ +V S N++ HT HTA+V V+
Sbjct: 490 HPAEITSVAFSNNGAFLV--ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 547
Query: 286 NKYFVTASLDNTWCFYDLS 304
N T SLDN+ ++++
Sbjct: 548 NVRLATGSLDNSVIVWNMN 566
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 122/310 (39%), Gaps = 47/310 (15%)
Query: 195 IHYSKD--VIATGGVDTNAVLFDRPSGQIVTTLS-------GHSKKVTSVKFVTEGDLFL 245
+ Y+ D + A+ G D VL++ G HS V + + +G
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 246 TGSADKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLS 304
+ SADKT+++W + + T+ T E Q + + T + V+ S + F +
Sbjct: 256 SASADKTIKIWNVA---TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312
Query: 305 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DGHV 363
G + QV G + T+ + DG L + +E + WD+ + + F D H
Sbjct: 313 LG-SIDQVR----YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367
Query: 364 GAVTAISFSENGYYLATAAHDGVKLWDL--RKLKNFRSFESSDSETPTN---SVDFDHSG 418
+T I + G + D +K+ + + ++ + S P S D D
Sbjct: 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--- 424
Query: 419 SYLAVASA--DIRVY---QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 473
+AVA+ I +Y ++ V +N ++CV D +++AVG D
Sbjct: 425 --IAVAACYKHIAIYSHGKLTEVPISYN-------------SSCVALSNDKQFVAVGGQD 469
Query: 474 RNLRVFGLPG 483
+ V+ L G
Sbjct: 470 SKVHVYKLSG 479
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 411 SVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG 470
SV F ++G++L VA+ R SV ++ T T K CV + PD +A G
Sbjct: 496 SVAFSNNGAFL-VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 554
Query: 471 SMDRNLRVFGL 481
S+D ++ V+ +
Sbjct: 555 SLDNSVIVWNM 565
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 52/230 (22%)
Query: 165 LAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT 224
L I +E T+L + H+ ++ G +S + H +G + + V R + + T
Sbjct: 157 LVDIYDVESQTKLRTMAGHQ-ARVGCLSWNRHVLSSGSRSGAIHHHDV---RIANHQIGT 212
Query: 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284
L GHS +V + + ++G +G D V++W K T +H A V+AV
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCP 269
Query: 285 TNKYFVT---ASLDNTWCFYDLSSGICLTQVSDAG-----------------TDGRPEG- 323
+ ++D F++ ++G + V DAG T G P+
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNN 328
Query: 324 -----YTSA------------------AFHPDGLILGTGTSEALVKIWDV 350
Y+S+ A PDG IL T S+ +K W V
Sbjct: 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG 385
S + DG L G LV I+DV+SQ + GH V +S+ N + L++ + G
Sbjct: 139 SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSG 196
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKF--DGHVGAVTAISF 371
A+ DGL L +G ++ +V+IWD +S ++ KF H AV A+++
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARS--SIPKFTKTNHNAAVKAVAW 267
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 195 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTV 253
+ + V+ +G D A ++ G +V L H+ V K V+ + FLT SADKT+
Sbjct: 110 LSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167
Query: 254 RVWQ 257
++WQ
Sbjct: 168 KLWQ 171
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 217 PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE 276
P+G+++ GH ++ ++F L L+ S D T+R+W G GN + ++ H+
Sbjct: 239 PTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHG---GNGNSQNCFYGHSQS 291
Query: 277 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336
+ + + +K ++ S+D + + L L + DG P + DG
Sbjct: 292 IVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLAL---SIVDGVP--IFAGRISQDGQKY 345
Query: 337 GTGTSEALVKIWDVK 351
+ V ++D+K
Sbjct: 346 AVAFMDGQVNVYDLK 360
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/174 (17%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY 288
+ +VT + + +G+ +TG + +R+W + + L H A + +V + +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA----LLNVLNFHRAPIVSVKWNKDGTH 163
Query: 289 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------- 341
++ ++N +++ SG + T G +A H LG
Sbjct: 164 IISMDVENVTILWNVISGTVMQHFELKETGGSS---INAENHSGDGSLGVDVEWVDDDKF 220
Query: 342 -----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389
+ + ++ + + K GH G ++ + F++ L +A+ DG +++W
Sbjct: 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 42/222 (18%)
Query: 195 IHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSAD 250
+ Y +AT D +F+ + +++ TL+GH V V + G + + S D
Sbjct: 17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGIC 308
V +W+ E+G + H+A V +V H + AS D +
Sbjct: 77 GKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK---------VS 126
Query: 309 LTQVSDAGT------DGRPEGYTSAAFHP-----DGLILGT--------GTSEALVKIWD 349
+ + + GT D G SA++ P DG GT G ++ LVKIW
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 350 VKSQANV----AKFDGHVGAVTAISFSENGY---YLATAAHD 384
S A + +GH V +++S YLA+ + D
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 173 RYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKK 231
R++Q+A H +H S + Y + +A+ + V F + H+
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 232 VTSVKF-------------VTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEV 277
V S + E F+TG AD V++W+ + D Y + TL+ H+ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 278 QAVTVHAT---NKYFVTASLDNT 297
+ V T Y + S D T
Sbjct: 208 RDVAWSPTVLLRSYLASVSQDRT 230
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 42/222 (18%)
Query: 195 IHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSAD 250
+ Y +AT D +F+ + +++ TL+GH V V + G + + S D
Sbjct: 19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGIC 308
V +W+ E+G + H+A V +V H + AS D +
Sbjct: 79 GKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK---------VS 128
Query: 309 LTQVSDAGT------DGRPEGYTSAAFHP-----DGLILGT--------GTSEALVKIWD 349
+ + + GT D G SA++ P DG GT G ++ LVKIW
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188
Query: 350 VKSQANV----AKFDGHVGAVTAISFSENGY---YLATAAHD 384
S A + +GH V +++S YLA+ + D
Sbjct: 189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 173 RYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKK 231
R++Q+A H +H S + Y + +A+ + V F + H+
Sbjct: 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149
Query: 232 VTSVKF-------------VTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEV 277
V S + E F+TG AD V++W+ + D Y + TL+ H+ V
Sbjct: 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209
Query: 278 QAVTVHAT---NKYFVTASLDNT 297
+ V T Y + S D T
Sbjct: 210 RDVAWSPTVLLRSYLASVSQDRT 232
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 42/220 (19%)
Query: 197 YSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKT 252
Y +AT D +F+ + +++ TL+GH V V + G + + S D
Sbjct: 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLT 310
V +W+ E+G + H+A V +V H + AS D + +
Sbjct: 79 VLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK---------VSVV 128
Query: 311 QVSDAGT------DGRPEGYTSAAFHP-----DGLILGT--------GTSEALVKIWDVK 351
+ + GT D G SA++ P DG GT G ++ LVKIW
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Query: 352 SQANV----AKFDGHVGAVTAISFSENGY---YLATAAHD 384
S A + +GH V +++S YLA+ + D
Sbjct: 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 173 RYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKK 231
R++Q+A H +H S + Y + +A+ + V F + H+
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 232 VTSVKF-------------VTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEV 277
V S + E F+TG AD V++W+ + D Y + TL+ H+ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 278 QAVTVHAT---NKYFVTASLDNT 297
+ V T Y + S D T
Sbjct: 208 RDVAWSPTVLLRSYLASVSQDRT 230
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 42/220 (19%)
Query: 197 YSKDVIATGGVDTNAVLFD--RPSGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKT 252
Y +AT D +F+ + +++ TL+GH V V + G + + S D
Sbjct: 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLT 310
V +W+ E+G + H+A V +V H + AS D + +
Sbjct: 79 VMIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK---------VSVV 128
Query: 311 QVSDAGT------DGRPEGYTSAAFHP-----DGLILGT--------GTSEALVKIWDVK 351
+ + GT D G SA++ P DG GT G ++ LVKIW
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Query: 352 SQANV----AKFDGHVGAVTAISFSENGY---YLATAAHD 384
S A + +GH V +++S Y+A+ + D
Sbjct: 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 173 RYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKK 231
R++Q+A H +H S + Y + +A+ + V F + H+
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 232 VTSVKF-------------VTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEV 277
V S + E F+TG AD V++W+ + D Y + TL+ H+ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 278 QAVTVHAT---NKYFVTASLDNT 297
+ V T Y + S D T
Sbjct: 208 RDVAWSPTVLLRSYMASVSQDRT 230
>pdb|3ZQB|A Chain A, Prgi-Sipd From Salmonella Typhimurium
pdb|3ZQB|B Chain B, Prgi-Sipd From Salmonella Typhimurium
pdb|3ZQE|A Chain A, Prgi-Sipd From Salmonella Typhimurium In Complex With
Deoxycholate
pdb|3ZQE|B Chain B, Prgi-Sipd From Salmonella Typhimurium In Complex With
Deoxycholate
Length = 305
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 29/168 (17%)
Query: 339 GTSEALVKIWDVKSQANVAKFDGHVGA---VTAI------SFSE-----NGYYLATAAHD 384
GT+ + +IWD+ SQ A D ++G V A+ +FS+ G+ L +
Sbjct: 88 GTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLPGKDGN 147
Query: 385 GVKLWDLRKLKN-FRSFESSDSETPTNSVDFD-HSGSYLAVAS-ADIRVYQVASVKADWN 441
VKL D+ LKN S + ++ +N+V F SGS + VA+ A+ R + ++ + +
Sbjct: 148 TVKL-DVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQW-LSELNLPNS 205
Query: 442 CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSE 489
C+K++ G+G V P K M +++ G PG D+ E
Sbjct: 206 CLKSY----GSGYVVTVDLTPLQK------MVQDIDGLGAPGKDSKLE 243
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS--ENGYYLATAAHDGVKLW 389
DG +G + VK+WD+ +A + ++ H V ++ ++ +L+ + LW
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 390 DLRKLKNFRSFESSDSETPTNSVDF 414
D RK K + S+T SV +
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTW 234
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 37/180 (20%)
Query: 220 QIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277
+++ TL+GH V V + G + + S D V +W+ E+G + H+A V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK-EENGRWSQIAVHAVHSASV 102
Query: 278 QAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT------DGRPEGYTSAAF 329
+V H + AS D + + + + GT D G SA++
Sbjct: 103 NSVQWAPHEYGPXLLVASSDGK---------VSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Query: 330 HP-----DGLILGT--------GTSEALVKIWDVKSQANV----AKFDGHVGAVTAISFS 372
P DG GT G ++ LVKIW S A + +GH V +++S
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 18/143 (12%)
Query: 173 RYTQLASHPLHKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKK 231
R++Q+A H +H S + Y + +A+ + V F + H+
Sbjct: 88 RWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147
Query: 232 VTSVKF-------------VTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEV 277
V S + E F+TG AD V++W+ + D Y + TL+ H+ V
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207
Query: 278 QAVTVHAT---NKYFVTASLDNT 297
+ V T Y + S D T
Sbjct: 208 RDVAWSPTVLLRSYXASVSQDRT 230
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 362 HVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSG 418
H VT F+ + +AT++ D VKLWDLR +K+ S+ + E P N+ F+ +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 419 SYLAVAS---ADIRVY 431
S + + +IRVY
Sbjct: 262 STKLLTTDQRNEIRVY 277
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 362 HVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSG 418
H VT F+ + +AT++ D VKLWDLR +K+ S+ + E P N+ F+ +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 419 SYLAVAS---ADIRVY 431
S + + +IRVY
Sbjct: 263 STKLLTTDQRNEIRVY 278
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 138 TPAIIAELTDCNAALSQQRKKRQVPPALAPIDALERYTQ-LASHPLHKTSKPGIVSLDIH 196
+PA D LS+Q + PA+ P+D+ R L H + G+ S+
Sbjct: 307 SPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLVVGQEHYDTARGVQSILQR 366
Query: 197 YS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--- 251
Y KD+IA G+D +V + ++ FV E TGS K
Sbjct: 367 YQELKDIIAILGMDE----LSEEDKLVVARARKIQRFLSQPFFVAE---VFTGSPGKYVS 419
Query: 252 ---TVRVWQGSEDGNYD 265
T+R ++G +G YD
Sbjct: 420 LKDTIRGFKGIMEGEYD 436
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272
L D PSGQ K +K F +G D +++W+ EDG + + L+
Sbjct: 167 LIDHPSGQ----------KPNYIK------RFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210
Query: 273 HTAEVQAV 280
H+ V+ V
Sbjct: 211 HSDWVRDV 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,713,715
Number of Sequences: 62578
Number of extensions: 606755
Number of successful extensions: 2337
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 345
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)