Query 011256
Match_columns 490
No_of_seqs 1025 out of 2602
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 23:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0289 mRNA splicing factor [ 100.0 9E-88 1.9E-92 596.4 42.2 451 15-481 51-505 (506)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.2E-51 1.6E-55 360.6 32.7 284 181-480 169-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 4E-48 8.7E-53 338.9 28.1 283 182-480 110-479 (480)
4 KOG0286 G-protein beta subunit 100.0 1.3E-45 2.8E-50 312.7 34.9 291 178-480 46-343 (343)
5 KOG0279 G protein beta subunit 100.0 3.8E-41 8.1E-46 283.9 32.1 292 181-482 9-313 (315)
6 KOG0271 Notchless-like WD40 re 100.0 2.7E-40 5.9E-45 289.8 23.4 252 220-485 106-442 (480)
7 KOG0284 Polyadenylation factor 100.0 5.7E-41 1.2E-45 296.5 19.2 283 185-483 94-381 (464)
8 KOG0315 G-protein beta subunit 100.0 7.4E-39 1.6E-43 265.7 29.9 271 200-485 11-291 (311)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-40 2.8E-45 295.6 19.2 243 180-432 210-458 (459)
10 PF08606 Prp19: Prp19/Pso4-lik 100.0 1.5E-41 3.3E-46 223.2 8.5 70 28-97 1-70 (70)
11 KOG0645 WD40 repeat protein [G 100.0 5.4E-38 1.2E-42 263.8 31.7 290 181-482 8-311 (312)
12 KOG0285 Pleiotropic regulator 100.0 1.4E-38 3.1E-43 276.8 28.5 293 181-485 145-442 (460)
13 KOG0295 WD40 repeat-containing 100.0 7.4E-39 1.6E-43 279.3 25.5 284 183-481 104-405 (406)
14 KOG0265 U5 snRNP-specific prot 100.0 2.2E-38 4.8E-43 269.8 27.6 284 182-480 42-336 (338)
15 KOG0279 G protein beta subunit 100.0 2.6E-38 5.7E-43 266.7 26.8 242 182-433 58-312 (315)
16 KOG0263 Transcription initiati 100.0 1.9E-38 4.1E-43 303.0 28.3 272 187-470 378-703 (707)
17 KOG0273 Beta-transducin family 100.0 5.7E-37 1.2E-41 275.9 30.2 277 187-482 235-523 (524)
18 KOG0266 WD40 repeat-containing 100.0 9.3E-37 2E-41 299.3 33.5 290 181-482 153-454 (456)
19 cd00200 WD40 WD40 domain, foun 100.0 1.2E-35 2.5E-40 276.4 38.1 281 184-480 6-289 (289)
20 KOG0291 WD40-repeat-containing 100.0 4.6E-36 1E-40 284.2 33.6 288 187-484 307-614 (893)
21 KOG0293 WD40 repeat-containing 100.0 4.1E-36 8.9E-41 266.0 29.4 291 180-485 217-516 (519)
22 KOG0318 WD40 repeat stress pro 100.0 1.4E-35 2.9E-40 270.5 33.4 294 181-482 184-602 (603)
23 KOG0273 Beta-transducin family 100.0 3.7E-36 8E-41 270.7 28.3 282 186-485 177-485 (524)
24 KOG0318 WD40 repeat stress pro 100.0 2.6E-35 5.6E-40 268.6 33.9 295 182-484 142-562 (603)
25 PLN00181 protein SPA1-RELATED; 100.0 4.9E-34 1.1E-38 300.7 46.7 284 185-481 481-792 (793)
26 KOG0296 Angio-associated migra 100.0 4.1E-35 9E-40 256.1 29.9 283 182-482 59-398 (399)
27 KOG0282 mRNA splicing factor [ 100.0 4.7E-37 1E-41 277.6 17.7 292 174-480 201-503 (503)
28 KOG0315 G-protein beta subunit 100.0 4E-35 8.8E-40 243.5 27.6 257 187-460 40-308 (311)
29 KOG0263 Transcription initiati 100.0 3.4E-36 7.4E-41 287.6 23.5 207 182-396 446-653 (707)
30 KOG0291 WD40-repeat-containing 100.0 1.5E-34 3.2E-39 274.1 33.8 281 188-484 266-552 (893)
31 KOG0643 Translation initiation 100.0 1.9E-35 4.2E-40 247.8 24.2 288 183-484 6-319 (327)
32 KOG0286 G-protein beta subunit 100.0 3.2E-34 6.9E-39 243.6 29.4 252 223-485 49-306 (343)
33 KOG0288 WD40 repeat protein Ti 100.0 8.2E-35 1.8E-39 258.0 26.5 283 182-480 170-459 (459)
34 KOG0316 Conserved WD40 repeat- 100.0 3.4E-34 7.4E-39 236.1 26.3 281 182-480 12-297 (307)
35 KOG0278 Serine/threonine kinas 100.0 1.6E-35 3.4E-40 246.0 18.4 287 183-487 10-302 (334)
36 KOG0276 Vesicle coat complex C 100.0 2.1E-34 4.6E-39 267.6 27.7 281 186-482 12-298 (794)
37 KOG0281 Beta-TrCP (transducin 100.0 7.1E-36 1.5E-40 259.1 16.2 278 186-486 196-481 (499)
38 KOG0285 Pleiotropic regulator 100.0 5.1E-35 1.1E-39 254.7 20.8 249 220-485 142-392 (460)
39 KOG0282 mRNA splicing factor [ 100.0 1E-35 2.2E-40 268.9 16.8 256 219-484 204-464 (503)
40 KOG0319 WD40-repeat-containing 100.0 3.5E-34 7.7E-39 271.2 27.2 293 184-486 102-581 (775)
41 KOG0319 WD40-repeat-containing 100.0 6.2E-34 1.3E-38 269.5 27.1 288 185-481 321-618 (775)
42 KOG1407 WD40 repeat protein [F 100.0 4.8E-33 1E-37 232.8 27.2 282 183-483 16-312 (313)
43 KOG0275 Conserved WD40 repeat- 100.0 1.3E-33 2.7E-38 243.1 23.8 295 173-480 199-507 (508)
44 KOG0292 Vesicle coat complex C 100.0 1.7E-33 3.7E-38 271.0 26.9 283 187-484 9-323 (1202)
45 KOG0300 WD40 repeat-containing 100.0 3.7E-33 8.1E-38 239.5 24.7 290 181-484 142-478 (481)
46 KOG0284 Polyadenylation factor 100.0 7.9E-35 1.7E-39 257.7 14.6 243 181-433 132-379 (464)
47 KOG0640 mRNA cleavage stimulat 100.0 2.1E-33 4.5E-38 240.4 22.5 292 183-482 108-426 (430)
48 KOG0310 Conserved WD40 repeat- 100.0 1.3E-32 2.8E-37 249.3 27.8 298 171-487 11-314 (487)
49 KOG0295 WD40 repeat-containing 100.0 1.6E-33 3.5E-38 246.1 20.9 241 182-432 145-404 (406)
50 KOG0306 WD40-repeat-containing 100.0 1.4E-32 3E-37 260.6 28.0 287 183-483 369-665 (888)
51 KOG0265 U5 snRNP-specific prot 100.0 1.1E-32 2.4E-37 235.1 23.2 253 221-483 39-297 (338)
52 KOG0266 WD40 repeat-containing 100.0 8.3E-32 1.8E-36 264.3 31.6 253 223-485 152-412 (456)
53 KOG0316 Conserved WD40 repeat- 100.0 2E-32 4.4E-37 225.7 22.4 247 221-485 9-260 (307)
54 KOG2055 WD40 repeat protein [G 100.0 2.5E-31 5.5E-36 239.1 29.2 285 185-482 211-512 (514)
55 KOG0772 Uncharacterized conser 100.0 4E-32 8.7E-37 247.2 24.0 293 183-481 163-486 (641)
56 KOG0276 Vesicle coat complex C 100.0 9.3E-32 2E-36 250.1 25.9 234 185-427 53-290 (794)
57 KOG0268 Sof1-like rRNA process 100.0 3.4E-33 7.5E-38 243.8 15.4 279 184-484 63-347 (433)
58 KOG1446 Histone H3 (Lys4) meth 100.0 9.3E-30 2E-34 219.4 34.5 285 186-487 13-308 (311)
59 KOG0305 Anaphase promoting com 100.0 7.2E-31 1.6E-35 247.2 28.5 275 191-485 181-464 (484)
60 KOG0283 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 259.0 23.1 290 181-485 261-579 (712)
61 KOG0313 Microtubule binding pr 100.0 9.5E-31 2E-35 230.0 26.7 287 185-482 103-418 (423)
62 KOG0645 WD40 repeat protein [G 100.0 8.2E-30 1.8E-34 214.6 30.7 246 221-483 6-262 (312)
63 KOG0292 Vesicle coat complex C 100.0 7.6E-31 1.6E-35 252.8 26.9 247 182-433 46-320 (1202)
64 KOG0973 Histone transcription 100.0 8E-31 1.7E-35 259.4 27.8 292 181-484 7-357 (942)
65 KOG0277 Peroxisomal targeting 100.0 5E-31 1.1E-35 219.9 21.6 277 191-481 12-308 (311)
66 KOG0306 WD40-repeat-containing 100.0 4.5E-30 9.8E-35 243.7 29.2 287 182-485 102-583 (888)
67 KOG0274 Cdc4 and related F-box 100.0 5E-30 1.1E-34 250.8 30.4 276 185-486 206-486 (537)
68 PTZ00421 coronin; Provisional 100.0 3.4E-29 7.4E-34 244.8 35.1 267 187-463 20-314 (493)
69 cd00200 WD40 WD40 domain, foun 100.0 1.7E-29 3.7E-34 234.8 31.6 247 223-485 3-252 (289)
70 KOG0299 U3 snoRNP-associated p 100.0 2.1E-29 4.7E-34 226.8 29.7 283 181-476 136-450 (479)
71 PTZ00420 coronin; Provisional 100.0 5.2E-29 1.1E-33 244.4 35.2 249 205-464 50-318 (568)
72 KOG0281 Beta-TrCP (transducin 100.0 1.6E-31 3.4E-36 232.2 15.0 238 182-436 232-479 (499)
73 PLN00181 protein SPA1-RELATED; 100.0 9E-29 1.9E-33 260.9 35.7 265 208-484 457-740 (793)
74 KOG0293 WD40 repeat-containing 100.0 7.9E-30 1.7E-34 226.3 21.1 255 220-486 215-474 (519)
75 KOG0641 WD40 repeat protein [G 100.0 6E-28 1.3E-32 198.2 30.5 285 188-482 33-349 (350)
76 KOG0308 Conserved WD40 repeat- 100.0 5E-30 1.1E-34 239.8 19.6 292 186-484 20-329 (735)
77 PTZ00421 coronin; Provisional 100.0 3.4E-28 7.4E-33 237.8 33.0 229 181-417 69-314 (493)
78 KOG2096 WD40 repeat protein [G 100.0 1.3E-28 2.8E-33 211.8 26.2 286 181-480 80-400 (420)
79 KOG0296 Angio-associated migra 100.0 1E-28 2.3E-33 216.2 25.9 245 182-433 101-397 (399)
80 KOG0294 WD40 repeat-containing 100.0 2.2E-28 4.7E-33 210.3 26.9 263 202-485 4-284 (362)
81 KOG0275 Conserved WD40 repeat- 100.0 5.8E-30 1.2E-34 220.6 17.2 251 227-486 211-471 (508)
82 KOG1407 WD40 repeat protein [F 100.0 1.2E-28 2.6E-33 206.5 22.7 247 223-485 14-264 (313)
83 KOG0647 mRNA export protein (c 100.0 4.6E-28 9.9E-33 207.2 25.4 272 181-470 21-311 (347)
84 KOG0294 WD40 repeat-containing 100.0 5E-28 1.1E-32 208.1 25.4 260 182-460 38-305 (362)
85 KOG0310 Conserved WD40 repeat- 100.0 2E-28 4.3E-33 222.3 22.7 229 187-428 68-301 (487)
86 KOG1036 Mitotic spindle checkp 100.0 9.8E-28 2.1E-32 205.9 25.6 283 183-485 9-319 (323)
87 KOG1446 Histone H3 (Lys4) meth 100.0 8.5E-27 1.8E-31 201.2 30.8 251 221-485 6-265 (311)
88 KOG0313 Microtubule binding pr 100.0 4.4E-28 9.5E-33 213.3 22.8 247 227-487 103-381 (423)
89 KOG0278 Serine/threonine kinas 100.0 4.1E-29 8.8E-34 208.0 15.0 243 182-436 54-299 (334)
90 KOG1273 WD40 repeat protein [G 100.0 1.2E-27 2.6E-32 205.7 24.3 283 190-483 26-323 (405)
91 KOG0640 mRNA cleavage stimulat 100.0 1.8E-28 3.9E-33 210.2 18.9 256 222-484 105-385 (430)
92 KOG0305 Anaphase promoting com 100.0 7.4E-28 1.6E-32 226.9 24.6 241 182-434 212-461 (484)
93 KOG0639 Transducin-like enhanc 100.0 4.1E-28 8.8E-33 220.5 20.5 278 186-481 418-703 (705)
94 KOG0277 Peroxisomal targeting 100.0 4.4E-28 9.6E-33 202.3 18.3 236 187-432 60-307 (311)
95 KOG1332 Vesicle coat complex C 100.0 6.5E-28 1.4E-32 200.2 18.8 249 181-433 5-285 (299)
96 PTZ00420 coronin; Provisional 100.0 1.9E-26 4.2E-31 226.4 31.7 228 182-419 69-319 (568)
97 KOG0643 Translation initiation 100.0 9.3E-27 2E-31 195.8 24.6 231 224-472 5-251 (327)
98 KOG0274 Cdc4 and related F-box 100.0 8.1E-27 1.8E-31 228.3 27.8 236 183-436 245-484 (537)
99 KOG0288 WD40 repeat protein Ti 100.0 1.1E-27 2.4E-32 212.9 18.4 237 183-431 215-458 (459)
100 KOG0264 Nucleosome remodeling 100.0 3.4E-27 7.5E-32 212.7 21.6 248 183-433 120-403 (422)
101 KOG0641 WD40 repeat protein [G 100.0 9.8E-26 2.1E-30 185.2 28.2 256 174-433 76-348 (350)
102 KOG0301 Phospholipase A2-activ 100.0 1.4E-26 3E-31 218.5 26.1 277 181-485 8-291 (745)
103 KOG0973 Histone transcription 100.0 1.3E-26 2.9E-31 229.6 25.9 250 181-434 63-355 (942)
104 KOG1332 Vesicle coat complex C 100.0 3.5E-27 7.7E-32 195.9 17.9 252 226-483 8-287 (299)
105 KOG0289 mRNA splicing factor [ 100.0 1.8E-26 4E-31 206.3 23.8 244 180-433 254-505 (506)
106 KOG1539 WD repeat protein [Gen 100.0 4E-26 8.6E-31 219.5 27.7 291 183-485 198-609 (910)
107 KOG0646 WD40 repeat protein [G 100.0 9.4E-27 2E-31 210.3 21.1 229 187-423 81-336 (476)
108 KOG2106 Uncharacterized conser 100.0 1.5E-25 3.3E-30 204.1 28.3 291 186-489 245-588 (626)
109 KOG1274 WD40 repeat protein [G 100.0 1.4E-25 3.1E-30 218.1 29.6 278 182-479 8-297 (933)
110 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-24 2.8E-29 204.4 35.7 268 199-485 1-282 (300)
111 KOG0269 WD40 repeat-containing 99.9 6.8E-27 1.5E-31 223.1 18.4 287 187-487 39-345 (839)
112 KOG1408 WD40 repeat protein [F 99.9 4.3E-26 9.2E-31 215.5 23.3 286 185-483 367-714 (1080)
113 KOG0299 U3 snoRNP-associated p 99.9 1.8E-25 3.8E-30 201.7 24.5 231 184-427 199-446 (479)
114 KOG4283 Transcription-coupled 99.9 3.6E-25 7.9E-30 188.8 24.8 286 181-481 37-364 (397)
115 KOG2445 Nuclear pore complex c 99.9 1E-24 2.2E-29 187.2 27.2 276 179-482 5-318 (361)
116 KOG0647 mRNA export protein (c 99.9 2.9E-25 6.3E-30 190.1 23.5 246 227-484 25-283 (347)
117 KOG0772 Uncharacterized conser 99.9 8.5E-26 1.8E-30 206.2 21.2 261 219-482 157-445 (641)
118 KOG0646 WD40 repeat protein [G 99.9 2.6E-25 5.7E-30 201.0 24.0 264 209-484 18-309 (476)
119 KOG0267 Microtubule severing p 99.9 1.5E-27 3.2E-32 225.9 9.6 234 184-427 25-259 (825)
120 KOG0268 Sof1-like rRNA process 99.9 9.5E-27 2.1E-31 203.7 13.9 242 222-485 59-305 (433)
121 KOG0308 Conserved WD40 repeat- 99.9 4.9E-26 1.1E-30 213.3 18.8 293 183-483 69-394 (735)
122 KOG0639 Transducin-like enhanc 99.9 3.2E-26 7E-31 208.2 16.8 247 227-485 417-666 (705)
123 KOG0264 Nucleosome remodeling 99.9 2.2E-25 4.9E-30 201.0 22.0 253 227-483 122-405 (422)
124 KOG0650 WD40 repeat nucleolar 99.9 9.1E-25 2E-29 202.9 25.5 308 162-480 376-733 (733)
125 KOG1274 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 211.1 27.3 244 227-483 11-263 (933)
126 KOG1539 WD repeat protein [Gen 99.9 6.8E-24 1.5E-28 204.3 28.4 283 187-481 244-647 (910)
127 KOG1063 RNA polymerase II elon 99.9 4.1E-24 9E-29 201.8 25.2 298 181-484 261-650 (764)
128 KOG2048 WD40 repeat protein [G 99.9 4.2E-23 9.1E-28 194.7 31.9 288 182-483 20-320 (691)
129 KOG0300 WD40 repeat-containing 99.9 9.7E-25 2.1E-29 188.0 19.1 267 202-487 127-433 (481)
130 KOG1036 Mitotic spindle checkp 99.9 4.9E-24 1.1E-28 183.3 23.3 244 228-485 12-265 (323)
131 KOG2106 Uncharacterized conser 99.9 1.3E-22 2.8E-27 185.1 33.6 278 185-479 198-518 (626)
132 KOG0283 WD40 repeat-containing 99.9 8.6E-25 1.9E-29 211.6 20.1 205 219-434 359-576 (712)
133 KOG0267 Microtubule severing p 99.9 4E-26 8.7E-31 216.2 10.5 254 199-474 4-260 (825)
134 KOG2048 WD40 repeat protein [G 99.9 9E-23 2E-27 192.5 32.3 208 181-391 63-274 (691)
135 KOG4328 WD40 protein [Function 99.9 8.3E-24 1.8E-28 190.8 23.9 292 182-483 181-496 (498)
136 KOG0321 WD40 repeat-containing 99.9 7.3E-24 1.6E-28 198.4 22.8 286 191-484 53-393 (720)
137 KOG1538 Uncharacterized conser 99.9 1.5E-23 3.2E-28 197.1 22.2 270 189-483 14-294 (1081)
138 KOG0269 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 207.2 14.9 229 189-427 89-331 (839)
139 KOG1408 WD40 repeat protein [F 99.9 9.1E-24 2E-28 199.9 19.8 245 186-434 458-713 (1080)
140 KOG0302 Ribosome Assembly prot 99.9 2E-23 4.3E-28 183.9 20.2 245 185-432 149-436 (440)
141 KOG0301 Phospholipase A2-activ 99.9 3E-23 6.5E-28 196.1 22.4 231 184-434 54-288 (745)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-21 3.8E-26 183.1 34.1 253 189-462 32-300 (300)
143 KOG1009 Chromatin assembly com 99.9 1.2E-22 2.7E-27 180.7 22.9 285 187-483 13-373 (434)
144 KOG4283 Transcription-coupled 99.9 1.6E-22 3.5E-27 172.7 22.6 207 227-439 41-281 (397)
145 KOG1034 Transcriptional repres 99.9 9.5E-23 2.1E-27 176.7 20.4 291 181-481 32-382 (385)
146 KOG1188 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 177.2 20.8 278 200-483 41-347 (376)
147 KOG2055 WD40 repeat protein [G 99.9 1.4E-22 2.9E-27 183.2 20.7 248 229-483 213-468 (514)
148 KOG0270 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 182.1 20.6 235 191-434 177-449 (463)
149 KOG1063 RNA polymerase II elon 99.9 4E-22 8.6E-27 188.5 23.1 298 180-482 354-763 (764)
150 KOG2919 Guanine nucleotide-bin 99.9 1.1E-21 2.4E-26 169.8 23.8 284 190-483 52-368 (406)
151 KOG4378 Nuclear protein COP1 [ 99.9 3E-22 6.5E-27 182.3 20.3 265 183-464 30-305 (673)
152 KOG1273 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 170.9 20.3 244 232-485 26-283 (405)
153 KOG4328 WD40 protein [Function 99.9 6.1E-22 1.3E-26 178.8 20.9 268 214-485 171-453 (498)
154 KOG0270 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 175.3 23.8 283 190-486 128-453 (463)
155 KOG1034 Transcriptional repres 99.9 4.2E-22 9.1E-27 172.7 15.7 245 185-434 87-381 (385)
156 KOG0302 Ribosome Assembly prot 99.9 2.8E-21 6E-26 170.5 21.0 249 226-480 148-436 (440)
157 KOG0642 Cell-cycle nuclear pro 99.9 1.6E-21 3.4E-26 180.7 20.2 254 223-484 288-563 (577)
158 KOG0307 Vesicle coat complex C 99.9 2.6E-22 5.5E-27 200.4 14.9 283 191-485 10-330 (1049)
159 KOG2096 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 162.8 22.7 260 223-485 80-363 (420)
160 KOG0650 WD40 repeat nucleolar 99.9 3.1E-21 6.8E-26 179.6 20.3 249 221-480 392-678 (733)
161 KOG0649 WD40 repeat protein [G 99.9 9.7E-20 2.1E-24 151.7 25.3 271 189-480 12-314 (325)
162 KOG4227 WD40 repeat protein [G 99.9 3.8E-20 8.1E-25 164.1 22.1 290 183-481 52-386 (609)
163 KOG0303 Actin-binding protein 99.9 1.8E-20 3.9E-25 166.3 20.1 231 224-463 76-320 (472)
164 KOG0321 WD40 repeat-containing 99.9 2.2E-20 4.8E-25 175.3 21.6 252 182-434 95-391 (720)
165 PRK11028 6-phosphogluconolacto 99.9 1.2E-18 2.5E-23 165.9 34.0 273 202-483 5-305 (330)
166 KOG0307 Vesicle coat complex C 99.9 2.5E-21 5.4E-26 193.4 15.8 240 188-435 65-328 (1049)
167 KOG1963 WD40 repeat protein [G 99.9 2.6E-19 5.6E-24 174.5 29.1 297 180-483 198-539 (792)
168 KOG1007 WD repeat protein TSSC 99.9 6.6E-20 1.4E-24 156.4 21.8 270 208-483 39-362 (370)
169 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-20 3.7E-25 171.0 19.4 266 208-488 11-286 (673)
170 KOG1517 Guanine nucleotide bin 99.9 9.2E-20 2E-24 180.1 25.5 288 189-485 1066-1384(1387)
171 KOG0642 Cell-cycle nuclear pro 99.9 8.7E-21 1.9E-25 175.8 16.7 219 183-402 290-571 (577)
172 KOG1445 Tumor-specific antigen 99.9 2.1E-20 4.7E-25 175.1 18.9 123 180-305 72-201 (1012)
173 COG2319 FOG: WD40 repeat [Gene 99.9 7.5E-18 1.6E-22 165.9 38.0 289 182-485 60-362 (466)
174 KOG1523 Actin-related protein 99.9 2.1E-19 4.5E-24 155.7 22.9 232 187-421 10-264 (361)
175 KOG2110 Uncharacterized conser 99.9 6.4E-18 1.4E-22 149.3 32.2 286 187-484 5-332 (391)
176 KOG2919 Guanine nucleotide-bin 99.8 3E-19 6.4E-24 154.8 21.2 246 232-483 52-328 (406)
177 KOG1445 Tumor-specific antigen 99.8 1.6E-19 3.5E-24 169.2 20.6 206 276-485 629-847 (1012)
178 COG2319 FOG: WD40 repeat [Gene 99.8 5.3E-17 1.1E-21 159.8 37.2 284 181-483 149-443 (466)
179 KOG1272 WD40-repeat-containing 99.8 2.8E-20 6.1E-25 168.4 12.4 274 189-478 131-405 (545)
180 KOG0322 G-protein beta subunit 99.8 1.6E-19 3.4E-24 152.3 15.8 281 184-481 11-322 (323)
181 KOG0303 Actin-binding protein 99.8 6.7E-19 1.4E-23 156.5 20.5 230 179-417 73-320 (472)
182 KOG1587 Cytoplasmic dynein int 99.8 2.3E-18 4.9E-23 167.8 25.5 269 209-484 222-518 (555)
183 KOG2445 Nuclear pore complex c 99.8 1.5E-18 3.2E-23 149.6 20.5 209 271-483 10-257 (361)
184 KOG0290 Conserved WD40 repeat- 99.8 1.3E-18 2.9E-23 148.6 20.0 236 185-427 94-357 (364)
185 KOG0649 WD40 repeat protein [G 99.8 4E-18 8.7E-23 142.2 21.9 239 231-483 12-275 (325)
186 KOG1009 Chromatin assembly com 99.8 1.7E-18 3.7E-23 154.5 20.6 250 180-433 58-371 (434)
187 KOG0644 Uncharacterized conser 99.8 1.2E-19 2.5E-24 175.2 12.7 282 183-486 186-472 (1113)
188 PRK11028 6-phosphogluconolacto 99.8 7.8E-17 1.7E-21 153.3 32.1 265 188-460 35-327 (330)
189 KOG1524 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 160.6 18.6 259 186-478 13-282 (737)
190 KOG1334 WD40 repeat protein [G 99.8 5.4E-19 1.2E-23 161.1 15.7 300 182-487 137-471 (559)
191 KOG1963 WD40 repeat protein [G 99.8 6.8E-17 1.5E-21 157.8 29.2 287 191-485 164-490 (792)
192 KOG2110 Uncharacterized conser 99.8 1.1E-16 2.5E-21 141.5 26.7 236 229-485 5-251 (391)
193 KOG4227 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 148.7 20.1 255 223-484 50-324 (609)
194 KOG2139 WD40 repeat protein [G 99.8 1.6E-16 3.5E-21 140.0 26.3 284 188-482 99-431 (445)
195 KOG0290 Conserved WD40 repeat- 99.8 3E-17 6.5E-22 140.5 20.8 257 220-485 36-321 (364)
196 KOG1587 Cytoplasmic dynein int 99.8 2.4E-17 5.1E-22 160.7 23.0 247 185-433 240-515 (555)
197 KOG2111 Uncharacterized conser 99.8 2.1E-15 4.5E-20 131.1 31.0 280 188-482 6-322 (346)
198 KOG1240 Protein kinase contain 99.8 1.1E-16 2.4E-21 161.0 26.2 271 214-486 1034-1338(1431)
199 KOG4497 Uncharacterized conser 99.8 2.9E-16 6.3E-21 136.7 25.2 270 188-475 49-425 (447)
200 KOG0771 Prolactin regulatory e 99.8 7.8E-18 1.7E-22 151.4 15.3 198 191-392 148-354 (398)
201 KOG1524 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 154.1 16.7 203 199-427 75-277 (737)
202 KOG1538 Uncharacterized conser 99.8 3.1E-17 6.7E-22 155.0 19.2 238 181-433 47-292 (1081)
203 KOG1240 Protein kinase contain 99.8 2.4E-16 5.1E-21 158.7 26.3 248 184-434 1045-1334(1431)
204 PRK01742 tolB translocation pr 99.8 1.3E-16 2.8E-21 156.6 23.3 234 208-463 183-426 (429)
205 KOG1523 Actin-related protein 99.8 2.3E-16 5.1E-21 136.9 20.4 204 225-433 6-235 (361)
206 KOG1354 Serine/threonine prote 99.7 2.2E-16 4.8E-21 138.3 19.3 247 187-434 25-359 (433)
207 KOG1310 WD40 repeat protein [G 99.7 5.6E-17 1.2E-21 150.1 15.9 219 181-399 44-310 (758)
208 KOG2321 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 141.4 24.5 281 186-485 50-346 (703)
209 KOG0771 Prolactin regulatory e 99.7 8.7E-17 1.9E-21 144.8 15.7 194 233-434 148-354 (398)
210 KOG1310 WD40 repeat protein [G 99.7 1.7E-16 3.6E-21 147.0 15.0 241 222-487 43-308 (758)
211 KOG1007 WD repeat protein TSSC 99.7 1.1E-15 2.4E-20 130.9 18.4 227 249-483 38-290 (370)
212 KOG1188 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 132.7 19.3 190 242-436 41-244 (376)
213 KOG4497 Uncharacterized conser 99.7 3.2E-15 7E-20 130.3 20.7 273 192-483 13-392 (447)
214 PF02239 Cytochrom_D1: Cytochr 99.7 1E-13 2.3E-18 131.7 33.0 276 200-484 6-349 (369)
215 PF10282 Lactonase: Lactonase, 99.7 4E-13 8.8E-18 127.9 36.7 279 202-483 2-323 (345)
216 KOG2139 WD40 repeat protein [G 99.7 7.7E-15 1.7E-19 129.6 22.2 236 230-473 99-366 (445)
217 PRK01742 tolB translocation pr 99.7 2.3E-15 5.1E-20 147.7 21.4 214 184-417 200-426 (429)
218 KOG1334 WD40 repeat protein [G 99.7 5E-16 1.1E-20 142.0 14.3 260 220-484 133-426 (559)
219 KOG2111 Uncharacterized conser 99.7 4.2E-14 9.1E-19 123.0 24.6 234 231-485 7-259 (346)
220 PRK03629 tolB translocation pr 99.7 5.1E-14 1.1E-18 137.9 27.9 233 209-462 179-427 (429)
221 KOG3881 Uncharacterized conser 99.7 2.3E-14 5.1E-19 127.9 20.7 264 188-463 56-342 (412)
222 KOG0644 Uncharacterized conser 99.7 2.6E-16 5.6E-21 152.4 8.8 241 220-486 181-430 (1113)
223 KOG2394 WD40 protein DMR-N9 [G 99.7 2.8E-14 6E-19 132.2 21.6 241 190-461 126-383 (636)
224 PRK05137 tolB translocation pr 99.6 1.7E-13 3.8E-18 135.0 28.0 232 209-462 182-432 (435)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 4.2E-15 9.1E-20 137.6 14.9 171 197-372 183-383 (636)
226 PF10282 Lactonase: Lactonase, 99.6 1.7E-12 3.7E-17 123.7 33.2 263 189-460 38-345 (345)
227 PRK04922 tolB translocation pr 99.6 1.2E-13 2.5E-18 136.1 25.0 233 209-462 184-432 (433)
228 PRK03629 tolB translocation pr 99.6 1.9E-13 4.1E-18 133.9 26.2 215 186-416 197-427 (429)
229 KOG1272 WD40-repeat-containing 99.6 2E-15 4.2E-20 137.4 10.3 226 232-480 132-360 (545)
230 PRK02889 tolB translocation pr 99.6 1.7E-13 3.6E-18 134.4 24.6 219 185-417 193-425 (427)
231 PRK05137 tolB translocation pr 99.6 5.2E-13 1.1E-17 131.6 28.2 214 251-484 182-414 (435)
232 KOG2315 Predicted translation 99.6 3.8E-13 8.2E-18 125.7 24.8 269 189-484 36-392 (566)
233 COG2706 3-carboxymuconate cycl 99.6 9.2E-12 2E-16 111.1 32.4 271 186-461 38-345 (346)
234 PRK02889 tolB translocation pr 99.6 2.5E-13 5.5E-18 133.2 25.1 234 209-463 176-425 (427)
235 PRK04922 tolB translocation pr 99.6 3.4E-13 7.3E-18 132.8 24.7 216 185-416 201-432 (433)
236 KOG0322 G-protein beta subunit 99.6 3.1E-14 6.7E-19 120.6 14.4 205 185-391 54-322 (323)
237 KOG1517 Guanine nucleotide bin 99.6 6.2E-14 1.3E-18 139.5 18.3 203 191-395 1169-1384(1387)
238 PF08662 eIF2A: Eukaryotic tra 99.6 3.1E-13 6.6E-18 116.8 20.4 155 191-359 9-186 (194)
239 PF08662 eIF2A: Eukaryotic tra 99.6 4.8E-13 1.1E-17 115.6 20.1 154 233-399 9-185 (194)
240 COG2706 3-carboxymuconate cycl 99.6 3.3E-11 7E-16 107.6 31.5 275 208-484 15-323 (346)
241 KOG3881 Uncharacterized conser 99.6 5.3E-13 1.2E-17 119.3 20.0 216 188-417 106-342 (412)
242 KOG2314 Translation initiation 99.6 3.1E-12 6.8E-17 119.3 25.2 274 191-483 214-526 (698)
243 KOG2041 WD40 repeat protein [G 99.6 1.3E-12 2.9E-17 125.1 22.8 278 187-482 14-337 (1189)
244 PF02239 Cytochrom_D1: Cytochr 99.6 1.1E-11 2.3E-16 118.0 29.2 241 191-447 40-356 (369)
245 KOG1354 Serine/threonine prote 99.5 3.5E-13 7.7E-18 118.4 16.6 253 229-485 25-362 (433)
246 TIGR02800 propeller_TolB tol-p 99.5 1.1E-11 2.4E-16 122.3 27.1 204 208-427 169-385 (417)
247 COG5354 Uncharacterized protei 99.5 1.1E-11 2.4E-16 114.7 24.5 275 187-485 32-398 (561)
248 KOG4547 WD40 repeat-containing 99.5 1E-11 2.2E-16 117.1 24.2 203 239-447 3-233 (541)
249 PRK00178 tolB translocation pr 99.5 2.7E-11 5.7E-16 119.7 28.6 232 210-462 180-427 (430)
250 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.5E-10 7.7E-15 105.2 34.0 257 209-485 27-333 (352)
251 KOG0280 Uncharacterized conser 99.5 2E-11 4.4E-16 105.4 23.2 269 208-484 45-335 (339)
252 KOG4547 WD40 repeat-containing 99.5 4.4E-12 9.5E-17 119.6 20.9 187 197-393 3-221 (541)
253 KOG1409 Uncharacterized conser 99.5 5.3E-12 1.2E-16 111.2 19.5 244 182-434 19-270 (404)
254 KOG0974 WD-repeat protein WDR6 99.5 2.5E-12 5.4E-17 128.5 19.5 273 188-484 8-290 (967)
255 TIGR02800 propeller_TolB tol-p 99.5 4.2E-11 9.1E-16 118.1 27.3 212 252-483 171-398 (417)
256 PRK00178 tolB translocation pr 99.5 3.1E-11 6.8E-16 119.2 26.1 216 185-416 196-427 (430)
257 PRK04792 tolB translocation pr 99.5 6.5E-11 1.4E-15 116.6 27.7 232 210-462 199-446 (448)
258 PRK04792 tolB translocation pr 99.4 3.8E-11 8.3E-16 118.2 24.8 215 186-416 216-446 (448)
259 KOG2321 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 115.1 20.1 232 192-433 99-342 (703)
260 KOG2314 Translation initiation 99.4 8.6E-11 1.9E-15 109.9 24.1 287 182-484 244-575 (698)
261 COG4946 Uncharacterized protei 99.4 9.9E-10 2.1E-14 101.1 29.2 213 197-425 276-507 (668)
262 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 113.2 25.7 221 188-418 185-426 (428)
263 KOG1064 RAVE (regulator of V-A 99.4 2E-12 4.4E-17 135.2 13.0 202 182-403 2203-2409(2439)
264 PRK01029 tolB translocation pr 99.4 2.8E-10 6.2E-15 111.2 27.1 239 209-464 165-426 (428)
265 KOG4190 Uncharacterized conser 99.4 3.4E-12 7.4E-17 119.0 12.4 289 182-478 730-1032(1034)
266 KOG0974 WD-repeat protein WDR6 99.4 2.1E-11 4.5E-16 122.1 17.3 195 189-393 89-289 (967)
267 KOG2315 Predicted translation 99.4 3E-10 6.4E-15 106.7 23.7 228 191-433 129-389 (566)
268 KOG0280 Uncharacterized conser 99.4 7.8E-11 1.7E-15 101.9 17.9 234 186-425 68-320 (339)
269 PF04762 IKI3: IKI3 family; I 99.4 1.9E-09 4E-14 113.9 31.9 285 188-481 22-378 (928)
270 COG5170 CDC55 Serine/threonine 99.4 2.9E-11 6.4E-16 105.1 15.0 240 187-427 26-358 (460)
271 PF04762 IKI3: IKI3 family; I 99.3 5.2E-09 1.1E-13 110.6 33.8 290 186-485 74-459 (928)
272 KOG4190 Uncharacterized conser 99.3 1E-11 2.3E-16 115.8 9.6 205 222-432 728-946 (1034)
273 KOG4532 WD40-like repeat conta 99.3 1E-09 2.2E-14 93.8 20.1 234 192-433 72-330 (344)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.7E-13 94.1 30.1 234 195-446 53-338 (352)
275 KOG1832 HIV-1 Vpr-binding prot 99.3 4.4E-12 9.4E-17 124.4 6.2 266 182-471 1096-1378(1516)
276 KOG0309 Conserved WD40 repeat- 99.3 4.7E-11 1E-15 115.1 12.9 288 187-483 24-340 (1081)
277 TIGR03300 assembly_YfgL outer 99.3 1.7E-08 3.6E-13 98.1 30.7 266 198-485 64-341 (377)
278 PLN02919 haloacid dehalogenase 99.2 3.7E-08 8E-13 106.2 33.5 239 191-435 571-889 (1057)
279 KOG2041 WD40 repeat protein [G 99.2 4.2E-10 9.1E-15 108.3 15.7 235 229-473 14-279 (1189)
280 PLN02919 haloacid dehalogenase 99.2 5.6E-08 1.2E-12 104.8 33.4 242 234-486 572-892 (1057)
281 KOG1409 Uncharacterized conser 99.2 7.4E-10 1.6E-14 97.9 15.1 254 220-485 15-273 (404)
282 COG5354 Uncharacterized protei 99.2 1.1E-08 2.3E-13 95.3 22.6 264 187-474 71-421 (561)
283 KOG4532 WD40-like repeat conta 99.2 4.3E-09 9.3E-14 90.1 18.2 193 201-393 130-332 (344)
284 KOG3914 WD repeat protein WDR4 99.2 4.6E-10 9.9E-15 101.4 13.1 214 190-415 65-298 (390)
285 PF15492 Nbas_N: Neuroblastoma 99.2 4.6E-08 1E-12 85.2 24.7 201 280-484 3-261 (282)
286 TIGR03300 assembly_YfgL outer 99.2 3.9E-08 8.5E-13 95.5 27.5 260 198-479 104-376 (377)
287 KOG1912 WD40 repeat protein [G 99.2 5.7E-09 1.2E-13 101.7 20.5 235 189-433 17-303 (1062)
288 PF08450 SGL: SMP-30/Gluconola 99.1 3.8E-07 8.2E-12 82.8 31.6 218 192-425 4-244 (246)
289 KOG4714 Nucleoporin [Nuclear s 99.1 1.5E-09 3.3E-14 92.4 14.0 196 190-393 39-255 (319)
290 PRK04043 tolB translocation pr 99.1 3.6E-08 7.8E-13 95.8 24.9 191 189-394 189-402 (419)
291 KOG1064 RAVE (regulator of V-A 99.1 4.6E-10 1E-14 118.2 11.9 214 242-484 2181-2400(2439)
292 COG5170 CDC55 Serine/threonine 99.1 3.2E-09 6.9E-14 92.7 15.2 250 229-482 26-367 (460)
293 KOG2066 Vacuolar assembly/sort 99.1 5.6E-09 1.2E-13 102.4 18.2 182 230-434 40-233 (846)
294 PF08450 SGL: SMP-30/Gluconola 99.1 6.6E-07 1.4E-11 81.2 31.0 224 234-471 4-244 (246)
295 KOG1912 WD40 repeat protein [G 99.1 1.6E-07 3.5E-12 91.8 27.2 288 183-483 51-552 (1062)
296 COG4946 Uncharacterized protei 99.1 1.6E-07 3.4E-12 86.9 25.1 215 238-471 275-507 (668)
297 PRK04043 tolB translocation pr 99.1 4.4E-07 9.5E-12 88.3 29.4 200 209-427 169-388 (419)
298 KOG0882 Cyclophilin-related pe 99.0 8.4E-09 1.8E-13 94.5 15.0 244 186-435 8-306 (558)
299 KOG1275 PAB-dependent poly(A) 99.0 2.8E-09 6E-14 105.6 12.3 182 285-480 146-340 (1118)
300 KOG2066 Vacuolar assembly/sort 99.0 1.1E-08 2.4E-13 100.3 15.6 185 187-393 39-234 (846)
301 PF15492 Nbas_N: Neuroblastoma 99.0 6.5E-07 1.4E-11 78.2 24.3 207 181-403 37-270 (282)
302 KOG2114 Vacuolar assembly/sort 99.0 2.3E-07 5E-12 92.0 23.5 197 231-434 27-243 (933)
303 KOG1832 HIV-1 Vpr-binding prot 99.0 4.2E-10 9.2E-15 110.8 4.5 219 220-468 1092-1317(1516)
304 KOG1645 RING-finger-containing 99.0 4.8E-07 1E-11 82.1 22.9 256 211-483 175-462 (463)
305 PF07433 DUF1513: Protein of u 99.0 2.5E-06 5.5E-11 76.9 27.5 232 191-433 8-282 (305)
306 KOG3914 WD repeat protein WDR4 98.9 1.7E-08 3.7E-13 91.4 13.2 164 232-403 65-234 (390)
307 KOG0882 Cyclophilin-related pe 98.9 2.4E-08 5.2E-13 91.6 13.2 217 183-401 49-314 (558)
308 KOG2695 WD40 repeat protein [G 98.9 1.3E-08 2.9E-13 90.2 11.0 174 192-372 216-401 (425)
309 KOG2114 Vacuolar assembly/sort 98.9 6.1E-07 1.3E-11 89.1 23.4 205 189-401 27-252 (933)
310 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.6E-11 79.1 24.0 214 208-435 2-231 (238)
311 KOG1275 PAB-dependent poly(A) 98.9 5.8E-08 1.3E-12 96.6 15.6 181 198-391 146-341 (1118)
312 KOG1645 RING-finger-containing 98.8 2.2E-07 4.7E-12 84.4 16.4 242 182-433 188-460 (463)
313 PRK11138 outer membrane biogen 98.8 4.3E-06 9.3E-11 81.6 26.5 264 199-482 120-394 (394)
314 KOG2695 WD40 repeat protein [G 98.8 1E-08 2.2E-13 90.9 7.0 160 245-415 228-401 (425)
315 KOG3621 WD40 repeat-containing 98.8 1.3E-06 2.9E-11 85.0 21.8 118 188-305 34-155 (726)
316 PF07433 DUF1513: Protein of u 98.8 2.4E-05 5.2E-10 70.7 28.1 225 232-476 7-279 (305)
317 KOG1920 IkappaB kinase complex 98.8 3.3E-06 7.1E-11 87.2 25.1 199 229-433 68-321 (1265)
318 KOG0309 Conserved WD40 repeat- 98.8 2.4E-08 5.2E-13 96.9 9.4 206 182-393 109-340 (1081)
319 KOG1920 IkappaB kinase complex 98.8 9E-06 2E-10 84.1 28.1 220 188-418 69-346 (1265)
320 PRK11138 outer membrane biogen 98.8 8.1E-06 1.7E-10 79.7 26.8 267 198-485 68-356 (394)
321 PF00400 WD40: WD domain, G-be 98.7 3.2E-08 7E-13 61.0 6.0 39 219-257 1-39 (39)
322 KOG4714 Nucleoporin [Nuclear s 98.7 1E-07 2.2E-12 81.5 10.6 150 196-352 98-255 (319)
323 PF13360 PQQ_2: PQQ-like domai 98.7 7E-06 1.5E-10 74.1 22.6 192 198-398 35-236 (238)
324 KOG4649 PQQ (pyrrolo-quinoline 98.7 1.8E-05 3.8E-10 68.2 22.6 263 198-484 62-353 (354)
325 KOG3617 WD40 and TPR repeat-co 98.7 3.1E-07 6.7E-12 90.7 13.7 271 192-481 20-332 (1416)
326 PF00930 DPPIV_N: Dipeptidyl p 98.7 1E-05 2.2E-10 77.6 23.5 264 196-471 1-346 (353)
327 PRK02888 nitrous-oxide reducta 98.7 2E-05 4.4E-10 77.8 25.3 167 295-471 214-450 (635)
328 PF04053 Coatomer_WDAD: Coatom 98.6 8.1E-06 1.7E-10 79.3 21.9 220 228-482 31-262 (443)
329 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.4E-12 57.3 6.3 38 265-302 2-39 (39)
330 PF08553 VID27: VID27 cytoplas 98.6 1.6E-05 3.4E-10 81.5 22.9 144 242-391 494-646 (794)
331 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00035 7.6E-09 68.0 29.0 206 210-424 62-277 (410)
332 cd00216 PQQ_DH Dehydrogenases 98.5 0.00023 5E-09 71.3 28.3 198 199-402 61-329 (488)
333 PF06977 SdiA-regulated: SdiA- 98.4 0.00016 3.4E-09 64.5 21.7 205 181-389 16-247 (248)
334 KOG3621 WD40 repeat-containing 98.4 9.7E-06 2.1E-10 79.2 15.0 200 230-434 34-244 (726)
335 PF11768 DUF3312: Protein of u 98.4 2.3E-05 5E-10 75.5 16.8 114 232-353 208-331 (545)
336 KOG1008 Uncharacterized conser 98.4 4.1E-07 8.9E-12 87.4 4.8 250 229-483 56-336 (783)
337 PF02897 Peptidase_S9_N: Proly 98.4 0.0028 6.1E-08 62.4 32.1 243 189-440 125-408 (414)
338 PRK02888 nitrous-oxide reducta 98.3 9.9E-05 2.2E-09 73.0 21.0 181 196-393 201-405 (635)
339 PF08596 Lgl_C: Lethal giant l 98.3 0.00011 2.4E-09 70.6 20.7 277 189-481 3-334 (395)
340 PF00780 CNH: CNH domain; Int 98.3 0.00069 1.5E-08 62.6 25.2 227 239-485 5-258 (275)
341 PF11768 DUF3312: Protein of u 98.3 2.3E-05 4.9E-10 75.6 14.9 114 191-310 209-335 (545)
342 PF06433 Me-amine-dh_H: Methyl 98.3 0.0022 4.7E-08 59.0 26.8 261 209-485 17-323 (342)
343 KOG1008 Uncharacterized conser 98.3 2.7E-07 5.9E-12 88.6 1.9 198 188-393 57-276 (783)
344 PF04053 Coatomer_WDAD: Coatom 98.3 0.00024 5.2E-09 69.2 22.0 143 273-435 31-174 (443)
345 PF06977 SdiA-regulated: SdiA- 98.3 0.0013 2.8E-08 58.8 24.6 199 224-427 16-242 (248)
346 cd00216 PQQ_DH Dehydrogenases 98.3 0.0028 6.1E-08 63.6 29.8 223 200-434 111-422 (488)
347 KOG3617 WD40 and TPR repeat-co 98.2 2.9E-05 6.3E-10 77.3 14.1 148 189-350 61-219 (1416)
348 COG3391 Uncharacterized conser 98.2 0.0018 3.9E-08 62.6 26.2 221 191-417 77-309 (381)
349 PF00780 CNH: CNH domain; Int 98.2 0.0043 9.4E-08 57.3 28.0 228 197-448 5-265 (275)
350 PF14583 Pectate_lyase22: Olig 98.2 0.0066 1.4E-07 57.0 29.2 275 194-482 42-381 (386)
351 PF03178 CPSF_A: CPSF A subuni 98.1 0.00041 8.9E-09 65.7 20.0 177 296-483 2-203 (321)
352 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0053 1.2E-07 53.4 26.2 111 199-315 23-134 (354)
353 PF14870 PSII_BNR: Photosynthe 98.1 0.0081 1.8E-07 55.3 33.4 277 187-479 16-301 (302)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.015 3.4E-07 58.6 31.2 193 199-397 69-338 (527)
355 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.003 6.5E-08 60.6 24.7 234 187-426 42-347 (353)
356 COG3391 Uncharacterized conser 98.1 0.014 3E-07 56.6 31.0 258 211-483 13-284 (381)
357 COG0823 TolB Periplasmic compo 98.1 0.0003 6.4E-09 68.3 17.5 144 273-426 191-345 (425)
358 COG0823 TolB Periplasmic compo 98.0 0.00095 2.1E-08 64.9 20.4 202 211-427 175-390 (425)
359 PF06433 Me-amine-dh_H: Methyl 98.0 0.012 2.7E-07 54.2 26.8 245 191-449 39-331 (342)
360 COG3386 Gluconolactonase [Carb 98.0 0.007 1.5E-07 56.1 24.6 221 236-471 31-274 (307)
361 PF03178 CPSF_A: CPSF A subuni 97.9 0.0057 1.2E-07 57.9 23.8 174 209-392 2-202 (321)
362 PF15390 DUF4613: Domain of un 97.9 0.012 2.6E-07 57.4 24.0 151 189-350 21-185 (671)
363 PF02897 Peptidase_S9_N: Proly 97.9 0.023 5E-07 55.9 27.4 238 232-485 126-407 (414)
364 PF04841 Vps16_N: Vps16, N-ter 97.8 0.018 3.8E-07 56.3 25.5 166 252-434 62-244 (410)
365 KOG4640 Anaphase-promoting com 97.8 9.1E-05 2E-09 71.7 9.4 92 188-283 21-114 (665)
366 PF08553 VID27: VID27 cytoplas 97.8 0.0019 4.1E-08 66.6 18.4 137 206-350 501-646 (794)
367 KOG2395 Protein involved in va 97.8 0.0066 1.4E-07 58.2 20.3 143 244-392 349-500 (644)
368 COG3386 Gluconolactonase [Carb 97.8 0.021 4.6E-07 52.9 23.4 221 194-427 31-276 (307)
369 KOG1897 Damage-specific DNA bi 97.8 0.074 1.6E-06 55.1 28.9 285 188-483 488-816 (1096)
370 PF08596 Lgl_C: Lethal giant l 97.7 0.0034 7.4E-08 60.4 18.2 206 223-433 80-334 (395)
371 KOG4441 Proteins containing BT 97.7 0.012 2.5E-07 60.0 22.8 218 197-427 283-532 (571)
372 KOG4640 Anaphase-promoting com 97.7 0.0002 4.4E-09 69.4 9.4 94 230-331 21-115 (665)
373 COG5276 Uncharacterized conser 97.7 0.035 7.6E-07 49.5 28.4 272 189-482 88-369 (370)
374 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0052 1.1E-07 46.6 14.4 100 232-346 2-109 (111)
375 PF14583 Pectate_lyase22: Olig 97.6 0.059 1.3E-06 50.8 24.3 243 215-473 16-303 (386)
376 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.008 1.7E-07 45.6 14.8 100 190-299 2-109 (111)
377 smart00320 WD40 WD40 repeats. 97.6 0.00018 4E-09 43.0 5.3 39 219-257 2-40 (40)
378 PF05694 SBP56: 56kDa selenium 97.6 0.0086 1.9E-07 56.7 17.8 202 286-487 87-347 (461)
379 KOG1897 Damage-specific DNA bi 97.6 0.1 2.2E-06 54.2 26.2 278 189-485 585-901 (1096)
380 PF05096 Glu_cyclase_2: Glutam 97.5 0.059 1.3E-06 48.1 23.8 189 188-384 45-251 (264)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.082 1.8E-06 51.0 24.3 89 192-284 6-118 (415)
382 PRK13616 lipoprotein LpqB; Pro 97.5 0.026 5.6E-07 57.5 21.3 184 275-476 350-562 (591)
383 PHA02713 hypothetical protein; 97.4 0.033 7.1E-07 56.8 21.5 218 252-485 273-536 (557)
384 COG3204 Uncharacterized protei 97.4 0.068 1.5E-06 47.8 20.1 200 182-383 81-303 (316)
385 PF05694 SBP56: 56kDa selenium 97.4 0.077 1.7E-06 50.5 21.6 223 198-426 86-393 (461)
386 KOG4441 Proteins containing BT 97.4 0.028 6E-07 57.3 20.5 229 240-484 284-548 (571)
387 PRK13616 lipoprotein LpqB; Pro 97.3 0.045 9.8E-07 55.8 20.8 211 208-427 328-559 (591)
388 KOG2079 Vacuolar assembly/sort 97.3 0.0048 1E-07 63.9 13.5 97 198-297 98-198 (1206)
389 smart00320 WD40 WD40 repeats. 97.3 0.00073 1.6E-08 40.2 5.1 38 265-302 3-40 (40)
390 PHA02713 hypothetical protein; 97.3 0.013 2.8E-07 59.7 16.8 188 198-397 303-538 (557)
391 PRK13684 Ycf48-like protein; P 97.3 0.18 3.8E-06 47.9 31.5 277 187-481 45-330 (334)
392 COG3490 Uncharacterized protei 97.2 0.14 3E-06 45.6 19.9 208 192-402 72-320 (366)
393 KOG2280 Vacuolar assembly/sort 97.2 0.1 2.2E-06 52.6 21.0 202 208-418 63-271 (829)
394 COG5276 Uncharacterized conser 97.2 0.15 3.3E-06 45.6 22.5 200 275-487 87-290 (370)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.43 9.4E-06 48.3 29.4 157 199-356 120-338 (527)
396 COG4257 Vgb Streptogramin lyas 97.0 0.21 4.5E-06 44.4 21.2 216 189-422 63-291 (353)
397 KOG2079 Vacuolar assembly/sort 97.0 0.0033 7.1E-08 65.1 9.3 103 332-434 98-203 (1206)
398 PF15390 DUF4613: Domain of un 97.0 0.09 2E-06 51.6 18.3 153 229-393 19-187 (671)
399 KOG2444 WD40 repeat protein [G 97.0 0.0014 3E-08 56.0 5.4 105 285-393 69-178 (238)
400 PF14870 PSII_BNR: Photosynthe 97.0 0.32 6.9E-06 45.0 22.9 153 225-384 140-296 (302)
401 TIGR02604 Piru_Ver_Nterm putat 96.9 0.42 9.1E-06 46.1 24.9 151 231-384 15-204 (367)
402 KOG2395 Protein involved in va 96.9 0.084 1.8E-06 51.0 16.7 142 332-482 344-500 (644)
403 PF07995 GSDH: Glucose / Sorbo 96.9 0.41 8.9E-06 45.4 25.1 238 231-477 3-330 (331)
404 PHA03098 kelch-like protein; P 96.9 0.12 2.6E-06 52.8 19.7 185 198-395 294-514 (534)
405 PF10168 Nup88: Nuclear pore c 96.8 0.56 1.2E-05 49.0 23.6 94 230-353 85-181 (717)
406 PF14727 PHTB1_N: PTHB1 N-term 96.8 0.56 1.2E-05 45.5 26.1 147 241-391 37-203 (418)
407 PF05096 Glu_cyclase_2: Glutam 96.8 0.37 8E-06 43.1 25.1 190 232-433 47-258 (264)
408 PRK10115 protease 2; Provision 96.7 0.85 1.9E-05 47.9 24.7 193 276-482 128-344 (686)
409 COG3204 Uncharacterized protei 96.7 0.41 9E-06 43.0 21.7 205 271-480 82-310 (316)
410 TIGR03074 PQQ_membr_DH membran 96.7 1.1 2.3E-05 47.4 24.9 197 199-399 194-484 (764)
411 PLN00033 photosystem II stabil 96.7 0.66 1.4E-05 44.9 35.0 151 324-479 241-396 (398)
412 PRK10115 protease 2; Provision 96.6 1.1 2.5E-05 47.0 31.2 195 189-393 128-347 (686)
413 PF10214 Rrn6: RNA polymerase 96.6 1.3 2.9E-05 47.2 26.7 114 322-435 146-277 (765)
414 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0081 1.7E-07 38.0 5.3 33 187-220 11-43 (47)
415 KOG2444 WD40 repeat protein [G 96.6 0.0082 1.8E-07 51.4 6.8 105 198-305 69-178 (238)
416 PHA03098 kelch-like protein; P 96.5 0.36 7.9E-06 49.3 20.0 196 239-448 293-523 (534)
417 TIGR02604 Piru_Ver_Nterm putat 96.5 0.91 2E-05 43.8 26.3 145 189-341 15-203 (367)
418 KOG4499 Ca2+-binding protein R 96.4 0.54 1.2E-05 40.8 19.5 136 321-462 108-263 (310)
419 PF07995 GSDH: Glucose / Sorbo 96.4 0.89 1.9E-05 43.1 23.7 237 190-431 4-330 (331)
420 PF12894 Apc4_WD40: Anaphase-p 96.4 0.015 3.3E-07 36.7 5.7 33 452-484 11-43 (47)
421 PHA02790 Kelch-like protein; P 96.4 0.31 6.8E-06 48.9 18.1 182 198-394 271-472 (480)
422 PF12234 Rav1p_C: RAVE protein 96.4 0.13 2.8E-06 52.2 15.0 110 324-433 32-155 (631)
423 COG5167 VID27 Protein involved 96.3 0.9 1.9E-05 44.0 19.3 146 240-392 478-632 (776)
424 COG3292 Predicted periplasmic 96.3 0.52 1.1E-05 46.3 17.8 135 345-483 356-492 (671)
425 COG3490 Uncharacterized protei 96.3 0.8 1.7E-05 41.0 22.8 229 234-483 72-349 (366)
426 PF10647 Gmad1: Lipoprotein Lp 96.3 0.86 1.9E-05 41.3 21.6 152 189-344 25-188 (253)
427 KOG1916 Nuclear protein, conta 96.2 0.012 2.6E-07 60.0 6.8 174 182-397 127-328 (1283)
428 KOG4499 Ca2+-binding protein R 96.2 0.75 1.6E-05 39.9 17.7 137 230-373 109-263 (310)
429 PF10647 Gmad1: Lipoprotein Lp 96.2 0.96 2.1E-05 41.0 22.6 146 231-385 25-187 (253)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.72 1.6E-05 44.7 18.4 85 272-360 305-407 (415)
431 PF12234 Rav1p_C: RAVE protein 96.0 0.2 4.3E-06 50.8 14.3 115 364-481 30-155 (631)
432 KOG3630 Nuclear pore complex, 95.9 0.11 2.3E-06 54.8 12.2 142 322-469 101-260 (1405)
433 PF14761 HPS3_N: Hermansky-Pud 95.8 0.91 2E-05 39.1 15.2 139 287-433 29-213 (215)
434 KOG3630 Nuclear pore complex, 95.7 0.16 3.5E-06 53.6 12.4 149 276-425 102-262 (1405)
435 PF10433 MMS1_N: Mono-function 95.6 3.1 6.6E-05 42.2 21.6 256 196-462 219-503 (504)
436 PF08728 CRT10: CRT10; InterP 95.5 0.76 1.6E-05 47.3 16.1 111 365-481 102-245 (717)
437 KOG1898 Splicing factor 3b, su 95.5 2.1 4.4E-05 45.4 19.0 178 298-484 855-1050(1205)
438 COG5167 VID27 Protein involved 95.4 0.97 2.1E-05 43.8 15.2 135 290-434 484-632 (776)
439 PHA02790 Kelch-like protein; P 95.3 1.2 2.6E-05 44.7 17.3 184 285-484 271-472 (480)
440 KOG2377 Uncharacterized conser 95.2 0.78 1.7E-05 43.8 13.9 141 240-383 32-173 (657)
441 KOG1896 mRNA cleavage and poly 95.2 5.9 0.00013 42.9 26.5 145 334-485 1047-1216(1366)
442 KOG1900 Nuclear pore complex, 95.1 0.69 1.5E-05 50.0 14.7 145 206-352 96-273 (1311)
443 PF10168 Nup88: Nuclear pore c 94.9 0.99 2.1E-05 47.2 15.5 29 364-392 85-113 (717)
444 PF14781 BBS2_N: Ciliary BBSom 94.9 0.88 1.9E-05 35.9 11.4 103 327-433 4-124 (136)
445 PF10433 MMS1_N: Mono-function 94.8 4.8 0.0001 40.8 20.1 219 189-416 257-503 (504)
446 PF08728 CRT10: CRT10; InterP 94.8 2 4.3E-05 44.3 16.7 148 199-350 49-245 (717)
447 KOG1916 Nuclear protein, conta 94.8 0.059 1.3E-06 55.2 5.9 184 250-443 110-328 (1283)
448 PF14727 PHTB1_N: PTHB1 N-term 94.7 4.5 9.8E-05 39.4 31.8 144 199-350 37-203 (418)
449 TIGR03074 PQQ_membr_DH membran 94.7 7 0.00015 41.5 23.6 116 286-402 194-354 (764)
450 PF07250 Glyoxal_oxid_N: Glyox 94.6 1.4 3E-05 39.3 13.4 149 211-361 48-207 (243)
451 KOG2377 Uncharacterized conser 94.6 1.5 3.2E-05 42.0 14.0 138 325-468 26-169 (657)
452 PLN02153 epithiospecifier prot 94.5 4.5 9.8E-05 38.6 23.3 151 198-354 32-228 (341)
453 COG3823 Glutamine cyclotransfe 94.5 2.5 5.5E-05 36.1 13.9 177 198-381 55-247 (262)
454 PF13449 Phytase-like: Esteras 94.5 4.2 9E-05 38.5 17.5 150 230-380 20-231 (326)
455 PRK13684 Ycf48-like protein; P 94.4 4.8 0.0001 38.2 26.4 147 274-427 172-323 (334)
456 PF14761 HPS3_N: Hermansky-Pud 94.3 3.1 6.8E-05 35.9 14.7 144 334-482 29-214 (215)
457 PF05935 Arylsulfotrans: Aryls 94.3 6.4 0.00014 39.5 22.9 150 207-362 126-312 (477)
458 COG4590 ABC-type uncharacteriz 94.2 0.2 4.3E-06 47.6 7.5 169 224-397 215-391 (733)
459 TIGR03118 PEPCTERM_chp_1 conse 93.9 5.1 0.00011 36.6 25.5 213 190-403 25-290 (336)
460 PF03022 MRJP: Major royal jel 93.8 5.5 0.00012 36.8 19.4 170 297-470 35-253 (287)
461 COG5290 IkappaB kinase complex 93.8 2.7 5.9E-05 43.2 14.8 132 326-465 206-349 (1243)
462 COG4590 ABC-type uncharacteriz 93.7 3 6.5E-05 40.0 14.2 157 275-435 221-387 (733)
463 PF14781 BBS2_N: Ciliary BBSom 93.7 2.8 6.1E-05 33.2 13.9 113 192-310 3-131 (136)
464 PRK13979 DNA topoisomerase IV 93.7 13 0.00028 40.6 27.6 175 194-376 511-711 (957)
465 TIGR03548 mutarot_permut cycli 93.6 6.5 0.00014 37.1 17.7 141 198-342 72-233 (323)
466 PLN02153 epithiospecifier prot 93.6 6.9 0.00015 37.3 23.6 185 285-474 85-325 (341)
467 PF07250 Glyoxal_oxid_N: Glyox 93.5 1 2.2E-05 40.1 10.6 138 345-484 48-199 (243)
468 KOG2280 Vacuolar assembly/sort 93.4 9.9 0.00022 39.1 17.9 175 188-375 84-271 (829)
469 PF07569 Hira: TUP1-like enhan 93.2 0.7 1.5E-05 40.8 9.1 67 328-394 17-97 (219)
470 KOG4460 Nuclear pore complex, 93.1 3.2 7E-05 40.6 13.6 99 231-359 105-206 (741)
471 PF02333 Phytase: Phytase; In 93.1 8.5 0.00018 36.8 22.9 186 197-393 66-291 (381)
472 KOG1898 Splicing factor 3b, su 93.0 15 0.00032 39.4 19.8 229 240-478 548-799 (1205)
473 TIGR03547 muta_rot_YjhT mutatr 92.9 8.8 0.00019 36.6 18.7 53 198-250 63-128 (346)
474 PF13449 Phytase-like: Esteras 92.6 9.4 0.0002 36.1 24.2 161 274-435 19-250 (326)
475 TIGR03548 mutarot_permut cycli 92.6 9.3 0.0002 36.1 19.2 139 332-473 72-233 (323)
476 PF10313 DUF2415: Uncharacteri 92.4 0.67 1.4E-05 28.4 5.3 32 275-306 1-35 (43)
477 PF10313 DUF2415: Uncharacteri 92.3 0.66 1.4E-05 28.5 5.3 31 323-353 2-35 (43)
478 PF07795 DUF1635: Protein of u 92.3 0.53 1.1E-05 40.3 6.6 52 46-97 9-60 (214)
479 TIGR03118 PEPCTERM_chp_1 conse 92.2 9.1 0.0002 35.1 21.5 204 276-485 24-282 (336)
480 PF07569 Hira: TUP1-like enhan 92.2 0.92 2E-05 40.0 8.5 70 282-352 18-96 (219)
481 PF14197 Cep57_CLD_2: Centroso 91.4 2.3 5E-05 29.4 7.9 63 35-97 5-67 (69)
482 PLN02193 nitrile-specifier pro 90.9 19 0.00041 36.1 25.1 192 198-396 175-414 (470)
483 KOG1900 Nuclear pore complex, 90.7 3.2 6.9E-05 45.2 11.8 143 340-484 96-274 (1311)
484 TIGR03547 muta_rot_YjhT mutatr 90.6 16 0.00035 34.8 22.2 43 296-342 168-210 (346)
485 PF08801 Nucleoporin_N: Nup133 90.6 19 0.00041 35.5 17.6 31 322-352 190-220 (422)
486 COG4257 Vgb Streptogramin lyas 90.5 13 0.00028 33.5 21.3 202 232-442 64-268 (353)
487 KOG3616 Selective LIM binding 90.5 6 0.00013 40.5 12.7 177 188-395 15-196 (1636)
488 KOG2006 WD40 repeat protein [G 90.3 2.5 5.5E-05 44.7 10.4 72 189-260 150-226 (1023)
489 KOG3522 Predicted guanine nucl 89.8 3.1 6.7E-05 43.1 10.3 143 243-398 549-703 (925)
490 KOG1983 Tomosyn and related SN 89.5 17 0.00037 40.0 16.4 30 230-259 36-65 (993)
491 PLN00033 photosystem II stabil 89.2 23 0.00049 34.5 26.8 143 277-427 241-391 (398)
492 PF11715 Nup160: Nucleoporin N 89.2 4.4 9.5E-05 41.6 11.6 75 239-313 156-257 (547)
493 PF11635 Med16: Mediator compl 89.2 35 0.00075 36.6 19.3 66 322-387 260-345 (753)
494 KOG2247 WD40 repeat-containing 89.2 0.17 3.8E-06 48.4 1.2 111 187-302 74-186 (615)
495 KOG2247 WD40 repeat-containing 88.8 0.065 1.4E-06 51.2 -1.9 138 234-381 39-177 (615)
496 PF10214 Rrn6: RNA polymerase 88.7 38 0.00083 36.4 19.2 117 186-305 144-277 (765)
497 KOG1520 Predicted alkaloid syn 88.2 24 0.00052 33.5 16.3 84 339-424 195-282 (376)
498 PF10395 Utp8: Utp8 family; I 88.1 35 0.00076 35.3 24.6 243 189-433 29-304 (670)
499 PF05935 Arylsulfotrans: Aryls 87.9 32 0.00069 34.6 16.5 104 327-434 153-299 (477)
500 KOG4460 Nuclear pore complex, 87.8 14 0.0003 36.4 12.6 27 365-391 105-131 (741)
No 1
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=9e-88 Score=596.39 Aligned_cols=451 Identities=51% Similarity=0.790 Sum_probs=407.0
Q ss_pred eecccCCCCCCCCCCCCChhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHH
Q 011256 15 TLFQSKQIVKPRPLTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLA 94 (490)
Q Consensus 15 ~~~~~~~~~~~~~~~~~sip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~ 94 (490)
-+||++..++||||++||||+||++|||||||+|||+|+||+||+.+|||||||||||||||||||||.|||+++|++|+
T Consensus 51 V~Ik~~~~v~pk~~satSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE~~eareaLa 130 (506)
T KOG0289|consen 51 VEIKVPAQVRPKPPSATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKERDEAREALA 130 (506)
T ss_pred eeccccccccCCCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCccccccccchhhccCCCCCCCCCcCCcccccCCCCCCHHHHHhHHHHHHHHHHhhccc--CCCCCCCChhhhh
Q 011256 95 QSERQIMPAESTAVTSNAALSNGKRAPEDEDLGPAGKKLHTGITPAIIAELTDCNAALSQQRKKR--QVPPALAPIDALE 172 (490)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~--~~~~~~~~~~~~~ 172 (490)
++..+++...+.+.++.... +....+....+...|+.++++..+.+..+.|++.||+| +.|+.++..+.+.
T Consensus 131 ~~~~qa~a~~peav~~~~~~-------s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg~k~p~~la~~d~~~ 203 (506)
T KOG0289|consen 131 KLSPQAGAIVPEAVPSLAQS-------SVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRGKKLPEKLATTDELS 203 (506)
T ss_pred hcCccccccccccccccccc-------chhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhccccCCcccccHHHHH
Confidence 99998877543333332211 11110111111235789999999999999999999999 8999999999999
Q ss_pred ccccceeec-cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC
Q 011256 173 RYTQLASHP-LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251 (490)
Q Consensus 173 ~~~~~~~~~-~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 251 (490)
.|.+...++ +|....++|+++...|..+.+.||+.|..+.++|..+++.+..+.||...|+.+.|+|+...+++++.|.
T Consensus 204 ~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 204 CLLQVASHTGLHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADE 283 (506)
T ss_pred HHHhcCCCcceeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcc
Confidence 999999998 8889999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
.|+||..... .+......|..+|+.+..||.|.||++++.||++.+.|++++.++...... .....+++.+|||
T Consensus 284 ~i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 284 IIRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHP 357 (506)
T ss_pred eEEeeccccc---cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcC
Confidence 9999998775 456667789999999999999999999999999999999999998887643 2336789999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCee
Q 011256 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
||.+|.+|..||.|+|||+.++..+..|.+|.++|..++|+.||+||+++++|+ |++||+|+.+...++.... ...+.
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~ 436 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVN 436 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccce
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999998765 34799
Q ss_pred EEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 411 SVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
++.|++.|.+|+.++.+++||.+....+.|.++..+..| .+..+++.|....++++++|.|..++++.+
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEeec
Confidence 999999999999999999999998888899999998886 678899999999999999999999999876
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.2e-51 Score=360.65 Aligned_cols=284 Identities=29% Similarity=0.520 Sum_probs=266.2
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeC--CCEEEEEeCCCcEEEEeC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~ 258 (490)
...-+-..+|..+.|+.+++.|+||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..+++|+.||++++|++
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 344556789999999999999999999999999999999999999999999999999996 558999999999999999
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
++. .++..+.+|...|..++|||+|++|++++.|.+.++||++++..+... .||..+|.+++|++||.++++
T Consensus 249 ~~e---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-----EGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 249 SQE---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-----EGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred CCC---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-----cccccccceeEecCCCceeec
Confidence 886 788899999999999999999999999999999999999998766544 478899999999999999999
Q ss_pred EcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC-
Q 011256 339 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH- 416 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~- 416 (490)
|+.|..-+|||+++|.++..+.+|..+|.++.|+|||+.|++|+.|+ ++|||++....+..+..| ..-|+.+.|+|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQ 398 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEeccc
Confidence 99999999999999999999999999999999999999999999998 999999999998888776 78899999998
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
.|.+|++++.| ++||.- ..|.+++.+.+| .+.|.++.+++|+.++++++.|+++++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~----~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWST----RTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecC----CCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeecc
Confidence 78999999999 999996 789999999997 88999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-48 Score=338.91 Aligned_cols=283 Identities=24% Similarity=0.427 Sum_probs=255.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|.++|.|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|++||..++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CccceeeeecccccceEEEEEec-----CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
+ .....+.+|...|++++|.| ..++|++++.||.++|||+..+.++..+. +|..+|+|+.|-.+| +|
T Consensus 190 ~--~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-----gHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 190 Q--QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-----GHTASVTCVRWGGEG-LI 261 (480)
T ss_pred C--cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-----cCccceEEEEEcCCc-eE
Confidence 5 56678899999999999987 45799999999999999999999988876 667899999997654 78
Q ss_pred EEEcCCCcEEEEECCCCceeeee---------------------------------------------------------
Q 011256 337 GTGTSEALVKIWDVKSQANVAKF--------------------------------------------------------- 359 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~--------------------------------------------------------- 359 (490)
++|+.|++|++|+...|.+...+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 99999999999987665433222
Q ss_pred ----------------------cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC
Q 011256 360 ----------------------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 360 ----------------------~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
.+|..-|+.+.||||++++++++.|. |++||.++++.+..|..| -..|..++|+.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH--v~~VYqvawsa 419 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH--VAAVYQVAWSA 419 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc--cceeEEEEecc
Confidence 16777899999999999999999998 999999999999999877 78999999999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
|.++|++|+.| ++||++ ........+++| ...|.++.|+|||..+++|+.|..+++|.
T Consensus 420 DsRLlVS~SkDsTLKvw~V----~tkKl~~DLpGh--~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDV----RTKKLKQDLPGH--ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CccEEEEcCCCceEEEEEe----eeeeecccCCCC--CceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999 999999 555666677776 88999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-45 Score=312.67 Aligned_cols=291 Identities=22% Similarity=0.368 Sum_probs=267.9
Q ss_pred eeeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 178 ASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 178 ~~~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
......++|...|.++.|+++.+.|++++.||.+.|||.-+...++.+.-....|..++|+|.|+++++|+.|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 33467889999999999999999999999999999999999888888888899999999999999999999999999999
Q ss_pred CCCC---CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CC
Q 011256 258 GSED---GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 333 (490)
Q Consensus 258 ~~~~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 333 (490)
+... +.....+.+.+|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..+. +|...|.++.++| ++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-----GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-----GHTGDVMSLSLSPSDG 199 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-----CCcccEEEEecCCCCC
Confidence 9854 23356677899999999999986 6789999999999999999999988876 6779999999999 99
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEE
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 412 (490)
+.|++|+.|+..++||+|.+.++++|.+|...|+++.|.|+|.-+++|++|+ .++||+|..+.+..+.......+|+++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 9999999999999999999999999999999999999999999999999998 999999999999988877778899999
Q ss_pred EEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 413 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+||.+|++|++|..| +.|||. -..+.+..+.+| .+.|+|+..+|||..|++|+.|..|+||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDt----lk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDT----LKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeec----cccceEEEeecc--CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999888 999997 556667777776 88999999999999999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-41 Score=283.92 Aligned_cols=292 Identities=23% Similarity=0.369 Sum_probs=250.5
Q ss_pred ccccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCC-----CCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEE
Q 011256 181 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRP-----SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 254 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 254 (490)
...++|++.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.||+..|..+..+++|++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 356789999999999986 5689999999999999865 3677899999999999999999999999999999999
Q ss_pred EEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC--
Q 011256 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-- 332 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 332 (490)
+||+.++ +..+.|.+|...|.+++|++++..+++|+.|.+|.+|++...... ++... .+...|.|+.|+|+
T Consensus 89 lWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~---~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 89 LWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHED---SHREWVSCVRFSPNES 161 (315)
T ss_pred EEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecC---CCcCcEEEEEEcCCCC
Confidence 9999997 788899999999999999999999999999999999998765444 33322 23589999999997
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeE
Q 011256 333 GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
..+|++++.|++|++||+++.+....+.+|.+.++.+.+||||.++++|+.|| +.+||++.++.+..+.. ...|.+
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v~s 238 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNS 238 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeEee
Confidence 68999999999999999999999999999999999999999999999999999 99999999999777765 678999
Q ss_pred EEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCC---CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 412 VDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL---SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
++|+|+..+|+.+... |+||++............+.+. .......+++|++||..|++|-.|+.|++|.+.
T Consensus 239 l~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999999888777 9999995433222221111111 012235678999999999999999999999874
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-40 Score=289.84 Aligned_cols=252 Identities=25% Similarity=0.418 Sum_probs=222.5
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
.+...+.||.++|.|+.|+|+|..|++|+.|.++++||+.+. .+..+.++|...|.|++|+|||+.|++|+.||.|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 445678899999999999999999999999999999999997 78899999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-----CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCC
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-----DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN 374 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~ 374 (490)
+||.++|+++... ..+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+
T Consensus 183 lwdpktg~~~g~~----l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 183 LWDPKTGQQIGRA----LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EecCCCCCccccc----ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 9999999876544 557889999999987 5689999999999999999999999999999999999999644
Q ss_pred CCEEEEEeCCC-EEEEECCCCcceeeeecC--------------------------------------------------
Q 011256 375 GYYLATAAHDG-VKLWDLRKLKNFRSFESS-------------------------------------------------- 403 (490)
Q Consensus 375 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-------------------------------------------------- 403 (490)
.+|++|+.|+ |++|+...+.+.+.+..|
T Consensus 259 -gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 -GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred -ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 4899999998 999987654422222111
Q ss_pred ---------------------------CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcc
Q 011256 404 ---------------------------DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK 454 (490)
Q Consensus 404 ---------------------------~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
.|..-|+.+.|+||++++++++-| +++|+- .+++.+..|.+| -+.
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g----~tGk~lasfRGH--v~~ 411 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG----RTGKFLASFRGH--VAA 411 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC----CCcchhhhhhhc--cce
Confidence 223568899999999999999999 999997 677888899887 889
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 455 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 455 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|..++|+.|.++|++|+.|.++++|++...+
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 9999999999999999999999999997654
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.7e-41 Score=296.48 Aligned_cols=283 Identities=21% Similarity=0.358 Sum_probs=245.4
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.-+-+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+|+++.|+++|.++++|+.+|.|++|+..-
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---- 169 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---- 169 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch----
Confidence 3456899999999999999999999999999865544556678999999999999999999999999999998766
Q ss_pred ceeeeecccc-cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 265 DCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 265 ~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
..+..+..|. ..|++++|+|+...|++++.||+|+|||....+....+. +|.-.|.+++|||...++++|+.|.
T Consensus 170 nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-----GHgwdVksvdWHP~kgLiasgskDn 244 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-----GHGWDVKSVDWHPTKGLIASGSKDN 244 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-----cCCCCcceeccCCccceeEEccCCc
Confidence 3455555554 899999999999999999999999999998887766664 5567899999999999999999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC-CEE
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYL 421 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l 421 (490)
.|++||.+++.++.++.+|+..|..+.|++++++|+++|.|. +++||+|+.+.+..+..+ ...++++.|+|-. .+|
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLF 322 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccce
Confidence 999999999999999999999999999999999999999998 999999988888888776 7889999999964 567
Q ss_pred EEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 422 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.+|+.| +..|.+. ....+..+ .+.|.+.|.+++|+|-|.+|++|+.|.++++|.-..
T Consensus 323 tsgg~Dgsvvh~~v~----~~~p~~~i-~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVG----LEEPLGEI-PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeccCCCceEEEecc----ccccccCC-CcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 777777 7777763 12222222 334688999999999999999999999999997643
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.4e-39 Score=265.67 Aligned_cols=271 Identities=17% Similarity=0.317 Sum_probs=236.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEE
Q 011256 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQA 279 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 279 (490)
-+|++++.|.+|++|...+|.+..+++...+.|+.++..|+++.|++++. -.|++||+.+.. ..++.++.+|...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-p~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-PNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-CCceeEEeccCCceEE
Confidence 48899999999999999999999999988899999999999999999886 579999999853 4589999999999999
Q ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee
Q 011256 280 VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 359 (490)
Q Consensus 280 l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 359 (490)
+.|..+|+.+++||+||+++|||++...+...+. +..+|+++..+|+...|++|..+|.|++||+....+...+
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 9999999999999999999999999966655554 3489999999999999999999999999999988777666
Q ss_pred cC-CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc------eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eE
Q 011256 360 DG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR 429 (490)
Q Consensus 360 ~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~ 429 (490)
.. ...+|.++...|+|.+|+.+...| .++|++-.... +..++.+ ...+..+.+||++++|++++.| ++
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEE
Confidence 44 346899999999999999998888 99999876432 3334443 7789999999999999999999 99
Q ss_pred EEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 430 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
||+.+.. ......+.+| ...+..++||.||.||++|+.|+.+++|++..++
T Consensus 241 iwn~~~~---~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 241 IWNTDDF---FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred EEecCCc---eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 9998432 3455556665 7899999999999999999999999999999876
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=295.62 Aligned_cols=243 Identities=25% Similarity=0.424 Sum_probs=229.0
Q ss_pred eccccCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 180 HPLHKTSKPGIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
.....+|...|.++.|+|. +..+|+|+.||++++|++.+..++..+.+|...|..++|+|+|++|+|++.|.+-++||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 3467889999999999996 56999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
+.++ ..+....||...|.+++|+|+|..+++||.|..-+|||++++.++..+. +|...|.+++|+|+|..|+
T Consensus 290 ~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-----gH~k~I~~V~fsPNGy~lA 361 (459)
T KOG0272|consen 290 LETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-----GHIKEILSVAFSPNGYHLA 361 (459)
T ss_pred cccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-----ccccceeeEeECCCceEEe
Confidence 9997 5666678999999999999999999999999999999999999998876 5679999999999999999
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
+|+.|++++|||++..+.+.++.+|..-|+.+.|+| .|++|++++.|+ ++||.-++..+++.+..| ...|.++.++
T Consensus 362 Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis 439 (459)
T KOG0272|consen 362 TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDIS 439 (459)
T ss_pred ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEec
Confidence 999999999999999999999999999999999999 699999999998 999999999999999887 7899999999
Q ss_pred CCCCEEEEEecC--eEEEE
Q 011256 416 HSGSYLAVASAD--IRVYQ 432 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~ 432 (490)
++++++++++.| +++|.
T Consensus 440 ~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCceEEEeccCceeeecc
Confidence 999999999999 99884
No 10
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=100.00 E-value=1.5e-41 Score=223.25 Aligned_cols=70 Identities=70% Similarity=1.022 Sum_probs=68.2
Q ss_pred CCCCChhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhh
Q 011256 28 LTAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 97 (490)
Q Consensus 28 ~~~~sip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~ 97 (490)
|++||||+||++|||||||+|||+|+|||||+++|||||+|||++|||||||||++||||++|++|++++
T Consensus 1 ~~~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~ 70 (70)
T PF08606_consen 1 PTATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ 70 (70)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999998763
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=263.76 Aligned_cols=290 Identities=23% Similarity=0.406 Sum_probs=238.1
Q ss_pred ccccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCC---cEEEEe-ccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 181 PLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG---QIVTTL-SGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
....+|++.|..++|+|. |.+||+|+.|+.|++|+...+ .+...+ .+|...|.+++|+|.|++|++||.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 456788899999999998 889999999999999998743 333333 379999999999999999999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
|.-.. +.++++.++.+|..+|.|++|+++|++|++++.|+.|.||.+..+........ ..+|...|..+.|||...+
T Consensus 88 w~k~~-~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV--L~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 88 WKKED-GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV--LQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred eecCC-CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee--eccccccccEEEEcCCcce
Confidence 98664 67899999999999999999999999999999999999999986544333322 3467788999999999999
Q ss_pred EEEEcCCCcEEEEECC---CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeE
Q 011256 336 LGTGTSEALVKIWDVK---SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
|++++.|.+|++|+-. .-.++.++.+|...|.+++|++.|..|+++++|+ ++||-+... + ...+...+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~-~~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L-SGMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----c-chhcccceEe
Confidence 9999999999999866 2368999999999999999999999999999998 999986621 1 1223577888
Q ss_pred EEEcCCCCEEEEEecC--eEEEEEeec--CCcceEeeeecCCCCCcceEEEEEcCC-CCeEEEEeCCCcEEEecCC
Q 011256 412 VDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d--i~v~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~~ 482 (490)
+.|. ...|++++.| +++|.-... ...++.+... .+.|...|+++.|.|. ...|++|++||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 5567777777 888876431 1223333222 2235779999999994 7789999999999999874
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-38 Score=276.78 Aligned_cols=293 Identities=19% Similarity=0.327 Sum_probs=258.9
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
.+..+|.+-|.|+++.|.+.++++|+.|++|+|||+.+|++..++.||-..|..+++++-..||++++.|+.|+.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
. +.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+++...+..+. +|..+|..+.+.|-...+++|+
T Consensus 225 n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 225 N---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----GHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred h---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----CCCCcceeEEeecCCCceEEec
Confidence 6 7888899999999999999999999999999999999999999888876 6678999999999888899999
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
.|++|++||++.|+...++..|...+.+++.+|..+.+++++.|.|+-|++..+..+..+..+ ...|+++....|| +
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-V 373 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccc--cceeeeeeeccCc-e
Confidence 999999999999999999999999999999999999999999999999999999888886665 6788999887665 5
Q ss_pred EEEEecC--eEEEEEeecCCcceEeeeec---CCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 421 LAVASAD--IRVYQVASVKADWNCIKTFP---DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+++|+.+ +.+|++..+.. ++...+.. .......|.+.+|...|..|++|..|.+|++|.-+...
T Consensus 374 ~~~G~dng~~~fwdwksg~n-yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHN-YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred EEEcCCceEEEEEecCcCcc-cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 6667766 88888855433 22222111 11235678999999999999999999999999876544
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-39 Score=279.33 Aligned_cols=284 Identities=22% Similarity=0.442 Sum_probs=265.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|..+|+.+-|+|+-.++++++.|++|++||..++++...++||...|.++.|+..|.++++++.|-.+++||..+.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~- 182 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF- 182 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
+.++..+.+|...|.++.|-|.|+++++++.|.+|+.|++.++.++.++. +|+..|..+..+.||.++++++.|
T Consensus 183 -~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-----~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 183 -FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-----GHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred -HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-----CchHhEEEEEecCCeeEEEecCCC
Confidence 57888899999999999999999999999999999999999999999987 455799999999999999999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCC---------------CCEEEEEeCCC-EEEEECCCCcceeeeecCCCC
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN---------------GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---------------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 406 (490)
.+|++|-+.++.+...+..|..+|.|++|.|. +.++.+++.|+ |++||+.++.++.++..+ .
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh--d 334 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH--D 334 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc--c
Confidence 99999999999999999999999999999772 35899999998 999999999999999887 7
Q ss_pred CCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 407 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
..|..++|+|.|+||+++.+| ++||++ ++..+.+.+..| ...|+++.|+.+..|+++|+-|-.+++|.-
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl----~~~~cmk~~~ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDL----KNLQCMKTLEAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEe----ccceeeeccCCC--cceeEEEecCCCCceEEeccccceeeeeec
Confidence 899999999999999999999 999999 778899998876 778999999999999999999999999963
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=269.83 Aligned_cols=284 Identities=23% Similarity=0.372 Sum_probs=250.9
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
...+|++.|+.+.|+|+|.+||+||.|..|.+|+.. .-+....+++|.++|..+.|.+|++.+++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 345789999999999999999999999999999953 4566778899999999999999999999999999999999999
Q ss_pred CCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
+ ++.+.+++|..-|+.+....-|. .+.+++.||++++||+++...++.+... ..++++.|..++..+.+|
T Consensus 122 G---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k------yqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 122 G---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK------YQLTAVGFKDTSDQVISG 192 (338)
T ss_pred c---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc------eeEEEEEecccccceeec
Confidence 8 88999999999999998655554 6677889999999999999888877533 678999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC----cceeeeecCCC--CCCeeEE
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDS--ETPTNSV 412 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~----~~~~~~~~~~~--~~~i~~i 412 (490)
+-|+.|++||++.+.....+.+|..+|+.+..+++|.++.+-+.|. +++||++.. .++..+..+.+ ......+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999999999999999999999999999999999999999998 999999864 34666666555 3445678
Q ss_pred EEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 413 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
.|+|++.++..|+.| +.+|+. .....+..+++| .+.|+++.|+|...+|.+++.|.+|++=.
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~----~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDT----TSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eccCCCCccccccccceEEEeec----ccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 899999999999999 889986 455677778886 88999999999999999999999998743
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-38 Score=266.74 Aligned_cols=242 Identities=24% Similarity=0.402 Sum_probs=215.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|...|..+..+++|++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|++|++|++..
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g- 136 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG- 136 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-
Confidence 4566888999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred Cccceeeeeccc--ccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 262 GNYDCKHTLKDH--TAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 262 ~~~~~~~~~~~h--~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.+..++..+ .+.|.|+.|+|+ ..+|++++.|+++++||+++.+....+. +|...++.++++|||.+.+
T Consensus 137 ---~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-----gh~~~v~t~~vSpDGslca 208 (315)
T KOG0279|consen 137 ---VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-----GHSGYVNTVTVSPDGSLCA 208 (315)
T ss_pred ---cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-----cccccEEEEEECCCCCEEe
Confidence 455555543 789999999998 6899999999999999999887766554 6778999999999999999
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCC-------CCCee
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDS-------ETPTN 410 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~-------~~~i~ 410 (490)
+|+.||.+.+||++.++.+..+. +...|.+++|+|+.++|+.+...+|+|||+.+...+..+..... .....
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 99999999999999999988876 67899999999999999999888899999999887766654321 23356
Q ss_pred EEEEcCCCCEEEEEecC--eEEEEE
Q 011256 411 SVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+++|+++|+.|++|..+ |++|.+
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEe
Confidence 78999999999999888 999987
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-38 Score=303.02 Aligned_cols=272 Identities=28% Similarity=0.451 Sum_probs=236.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-------------------------------cEEEEeccCccCEEEE
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-------------------------------QIVTTLSGHSKKVTSV 235 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------------~~~~~~~~h~~~v~~l 235 (490)
...++|..|++++.+||.|..|..|++|.+... ....++.||+++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 357999999999999999999999999987521 1234577999999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 011256 236 KFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 315 (490)
Q Consensus 236 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 315 (490)
.|+|+.++|+++|.|++|++|.+.+. .++..+.+|..+|+++.|+|.|-||++++.|++-++|..........+.
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-- 532 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-- 532 (707)
T ss_pred eecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc--
Confidence 99999999999999999999999886 8888999999999999999999999999999999999998877666654
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC
Q 011256 316 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~ 394 (490)
+|-+.|.|+.|||+..++++|+.|.+|++||+.+|..++.|.||.++|.+++|||+|++|++|+.++ |.+||+.++
T Consensus 533 ---ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 533 ---GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ---ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 5668999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc--------------------ceEeeeecCCCCC
Q 011256 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD--------------------WNCIKTFPDLSGT 452 (490)
Q Consensus 395 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~--------------------~~~~~~~~~~~~~ 452 (490)
..+..+..| .+.|.++.|+.+|..|++|+.| +++||+...... ...+..+... .
T Consensus 610 ~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK--~ 685 (707)
T KOG0263|consen 610 SLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK--N 685 (707)
T ss_pred cchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec--C
Confidence 999988887 8899999999999999999999 999998653332 1122233222 4
Q ss_pred cceEEEEEcCCCCeEEEE
Q 011256 453 GKATCVKFGPDAKYIAVG 470 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~s~ 470 (490)
.+|.++.|......|++|
T Consensus 686 tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 686 TPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ceEEEEEEeccceeEEec
Confidence 577888887665444444
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-37 Score=275.91 Aligned_cols=277 Identities=24% Similarity=0.432 Sum_probs=251.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
...|++++|+.+|.+||+|+.||.+++|+. +|.++.++..|.++|.++.|+..|++|++++.||++.+||..++ ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g---~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG---TV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc---eE
Confidence 358999999999999999999999999997 57888899999999999999999999999999999999999886 67
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEE
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 346 (490)
...+..|..+-..+.|- +...|++++.||.|+++.+....++.++. +|...|.++.|+|.|.+|++++.|++++
T Consensus 311 ~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~-----GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFI-----GHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred EEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeee-----cccCceEEEEECCCCceEEEecCCCeeE
Confidence 77888888887888887 56789999999999999999888888876 4669999999999999999999999999
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEcCCC---------CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC
Q 011256 347 IWDVKSQANVAKFDGHVGAVTAISFSENG---------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~---------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
||..........+..|...|..+.|+|.| ..+++++.|+ |++||+..+.++..|..+ ..+|.+++|+|
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~ 462 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSP 462 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecC
Confidence 99999999999999999999999999953 5788888887 999999999999998766 78999999999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
+|+|+++|+.| +.+|.. +....++.+.+ .+.|..++|+.+|.+|..+-.||.+++.|+.
T Consensus 463 ~g~ylAsGs~dg~V~iws~----~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWST----KTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCcEEEecCCCCeeEeccc----cchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999 999998 66677777665 6779999999999999999999999998874
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.3e-37 Score=299.28 Aligned_cols=290 Identities=26% Similarity=0.470 Sum_probs=256.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 258 (490)
.+...|...|.++.|+++|+.+++++.++.+++|+...++ ....+.+|...|.+++|+|++.++++|+.|++|+|||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 4555668899999999999999999999999999997777 77788899999999999999999999999999999999
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
.... .++.++.+|...|++++|+|+++.+++|+.|++|++||++++++...+. +|...|++++|++++.+|++
T Consensus 233 ~~~~--~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-----~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 233 KDDG--RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-----GHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred cCCC--eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-----ccCCceEEEEECCCCCEEEE
Confidence 4432 7889999999999999999999999999999999999999999988886 45689999999999999999
Q ss_pred EcCCCcEEEEECCCCc--eeeeecCCCCC--eEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCC-CCeeEE
Q 011256 339 GTSEALVKIWDVKSQA--NVAKFDGHVGA--VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE-TPTNSV 412 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~-~~i~~i 412 (490)
++.||.|++||+.++. ++..+.++... ++++.|+|++.++++++.|+ +++||++.+.....+..+... ..+.+.
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 9999999999999998 56777665554 99999999999999999997 999999999998888887543 245556
Q ss_pred EEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe--CCCcEEEecCC
Q 011256 413 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS--MDRNLRVFGLP 482 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~ 482 (490)
..++.+.++++|+.| +.+|++ .....+..+.+|. ...+..+.++|...++++++ .|+.+++|..+
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~----~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDS----SSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeC----CccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 668899999999999 999998 4455666666654 67889999999999999998 78999999865
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-35 Score=276.41 Aligned_cols=281 Identities=32% Similarity=0.600 Sum_probs=249.1
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..|..+|++++|+|+++++++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++|++...
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-- 83 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-- 83 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--
Confidence 368899999999999999999999999999999998888889999999999999999999999999999999999875
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
.....+..|...|.++.|++++.++++++.||.+.+||+.+++....+. .|...+.++.|+|++.++++++.+|
T Consensus 84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----cCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 5666777888899999999998888888889999999999888777665 3457899999999999999998899
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
.|++||+++++.+..+..|...|.++.|+|++..+++++.++ |++||++..+....+..+ ...+.++.|++++.+++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEE
Confidence 999999999998888888888999999999999999988887 999999988877776544 56899999999999998
Q ss_pred EEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 423 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 423 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+++.+ +++|++ ........+..+ ...|.+++|++++.+|++++.||.|++|+
T Consensus 236 ~~~~~~~i~i~~~----~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDL----RTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEc----CCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88744 999998 334555556544 67899999999999999999999999996
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-36 Score=284.23 Aligned_cols=288 Identities=25% Similarity=0.437 Sum_probs=249.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCC-CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVD-TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
..+|..+.|+..|++||.|+.. |.+.||++.+...+...++|...+++++++|||+++++|+.||.|+|||...+ -
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---f 383 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---F 383 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---e
Confidence 4589999999999999998765 89999999999999999999999999999999999999999999999999887 8
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-c
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-L 344 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~ 344 (490)
|..+|..|+..|+.+.|+..|+.+++++-||+|+.||+.......++.... +....|++..|.|.++++|+.|. .
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~----p~QfscvavD~sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE----PIQFSCVAVDPSGELVCAGAQDSFE 459 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC----ceeeeEEEEcCCCCEEEeeccceEE
Confidence 999999999999999999999999999999999999999999998886542 35678999999999999999887 5
Q ss_pred EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc-ceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
|.+|++.+|+.+..+.+|.++|.+++|+|.|..|++++-|. |++||+-... ...++.. ...+..++|.|+|+-|+
T Consensus 460 IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEE
Confidence 99999999999999999999999999999999999999997 9999986542 3344443 56789999999999999
Q ss_pred EEecC--eEEEEEeecCCcceE--------------eeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 423 VASAD--IRVYQVASVKADWNC--------------IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 423 ~~~~d--i~v~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
+++-| |.+|+.......... ..+-.........+.+++++||.+|++||....|++|+++.+
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 99988 999998432221100 000011112356899999999999999999999999999865
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-36 Score=266.05 Aligned_cols=291 Identities=19% Similarity=0.313 Sum_probs=244.7
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
.++...|.+.|..+.||++|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 3466789999999999999999999999999999986543 4578899999999999999999999999999999999
Q ss_pred eCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 257 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 257 d~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
|+.++ .+...+. +|...+.+++|.|||..|++|+.|+.+..||+.... ....... ....|.++++.+||.+
T Consensus 297 Dv~tg---d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv----r~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 297 DVDTG---DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGV----RDPKVHDLAITYDGKY 368 (519)
T ss_pred cCCcc---hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccccc----ccceeEEEEEcCCCcE
Confidence 99997 4444443 356889999999999999999999999999987544 2222211 1246899999999999
Q ss_pred EEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEE
Q 011256 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 414 (490)
+++.+.|..|++|+..+......+. ...+|++++.|.+|+++++.-.+. +.+||+...+.+..+.++.....+..-+|
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 9999999999999988765554444 456899999999999999988886 99999998888888888766666666677
Q ss_pred cC-CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCC
Q 011256 415 DH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 415 s~-~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.- +..++++|+.| |+||+. ....++..+.+| ...|+|++|+| +-.++|+||+||+|+||......
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr----~sgkll~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~ 516 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHR----ISGKLLAVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNN 516 (519)
T ss_pred CCCCcceEEecCCCceEEEEEc----cCCceeEeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCccc
Confidence 54 45899999999 999987 678889999997 78999999999 55679999999999999987553
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-35 Score=270.46 Aligned_cols=294 Identities=21% Similarity=0.322 Sum_probs=237.8
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec---cCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
.-+..|..-|.|+.|+|||.++++.+.||.|.+||-.+++.+..+. +|.+.|.+++|+||+..|++++.|.+++|||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 3456788899999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCC----------------------------------------ccceeeeecccccceEEEEEecCCCEEEEEECCCe
Q 011256 258 GSEDG----------------------------------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 297 (490)
Q Consensus 258 ~~~~~----------------------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 297 (490)
+.+.. .......+.+|...|+++..+|++++|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 66531 01234456789999999999999999999999999
Q ss_pred EEEEeCCCCeEEEE-----------eecC----------------------CCCC-------------------------
Q 011256 298 WCFYDLSSGICLTQ-----------VSDA----------------------GTDG------------------------- 319 (490)
Q Consensus 298 i~iwd~~~~~~~~~-----------~~~~----------------------~~~~------------------------- 319 (490)
|.-|+..++..-.. +... ....
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 99999876532110 0000 0000
Q ss_pred ------------------CCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce--eeeecCCCCCeEEEEEcCCCCEEE
Q 011256 320 ------------------RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 320 ------------------~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
-.....+++++|++..+++|+.||.|+||.+..+.. ......|.++|++++|+||+.+|+
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence 002245889999999999999999999999987543 334567999999999999999999
Q ss_pred EEeCCC-EEEEECCCCccee-eeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcce
Q 011256 380 TAAHDG-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 455 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 455 (490)
+|...+ +.+||+.+..... .+..| ...|.+++|+|+...+|+|+-| +.||.++...+ .+.....| ...|
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~~w~FH--takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~---~i~iknAH--~~gV 576 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTNRWAFH--TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK---HIIIKNAH--LGGV 576 (603)
T ss_pred EeccCCcEEEEEcccCceecceeeee--eeeEEEEEeCCCceEEEeccccceEEEEEccChhh---heEecccc--ccCc
Confidence 999988 9999998876522 22223 7899999999999999999999 99999854332 24444444 5559
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 456 TCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 456 ~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
+.+.|- |...|++.|.|..|++|++.
T Consensus 577 n~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 577 NSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeEEEe-cCceEEeccCcceeEEeccc
Confidence 999997 44678899999999999975
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-36 Score=270.70 Aligned_cols=282 Identities=21% Similarity=0.389 Sum_probs=244.3
Q ss_pred CCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCC--cEE--EEec----------cCccCEEEEEEeeCCCEEEEEeCC
Q 011256 186 SKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG--QIV--TTLS----------GHSKKVTSVKFVTEGDLFLTGSAD 250 (490)
Q Consensus 186 h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--~~~--~~~~----------~h~~~v~~l~~~~~~~~l~s~s~d 250 (490)
|+.+|.+++|+|-.. ++++|+.|-..++|++... ... ..++ ..+..|++++|+.+|..|++|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 889999999999766 9999999999999998641 111 1111 123679999999999999999999
Q ss_pred CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc
Q 011256 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
|.++||+... ..+.++..|.++|.++.|+..|+||++++.||++.+||..++.....+.... .+...+.|-
T Consensus 257 G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-----~~~lDVdW~ 327 (524)
T KOG0273|consen 257 GEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-----APALDVDWQ 327 (524)
T ss_pred cEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-----CCccceEEe
Confidence 9999999876 6778889999999999999999999999999999999999999988887542 333567776
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCe
Q 011256 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 409 (490)
.+ .-|++.+.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|+++++|+ ++||..........+..+ ...|
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H--skei 404 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH--SKEI 404 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh--ccce
Confidence 43 4688889999999999999999999999999999999999999999999998 999999888888877776 6789
Q ss_pred eEEEEcCCC---------CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 410 NSVDFDHSG---------SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 410 ~~i~~s~~~---------~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
..+.|+|.| ..+++++.| +++|++ ....++..|..| ..+|.+++|+|+|+|+++|+.||.|.+
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv----~~gv~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV----ESGVPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc----cCCceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEe
Confidence 999999864 467777777 999999 677788888776 889999999999999999999999999
Q ss_pred ecCCCCC
Q 011256 479 FGLPGND 485 (490)
Q Consensus 479 w~~~~~~ 485 (490)
|+.+.+.
T Consensus 479 ws~~~~~ 485 (524)
T KOG0273|consen 479 WSTKTGK 485 (524)
T ss_pred ccccchh
Confidence 9998764
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-35 Score=268.65 Aligned_cols=295 Identities=23% Similarity=0.377 Sum_probs=246.0
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
-..+|...|++++|-|... .+++|+.|++|.+|+-...+...++..|..-|.|+.|+|||.+|++++.||+|.+||-.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4457888999999999876 799999999999999888888889999999999999999999999999999999999988
Q ss_pred CCccceeeeec---ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC---------------------
Q 011256 261 DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG--------------------- 316 (490)
Q Consensus 261 ~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------------- 316 (490)
+ +.+..+. +|.+.|.+++|+||+..|++++.|.+++|||+.+..++.++....
T Consensus 222 g---e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl 298 (603)
T KOG0318|consen 222 G---EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL 298 (603)
T ss_pred c---cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence 7 4555555 899999999999999999999999999999999877665543221
Q ss_pred -----------------CCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCcee-----------eeec--------
Q 011256 317 -----------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-----------AKFD-------- 360 (490)
Q Consensus 317 -----------------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~~-------- 360 (490)
..+|...|+++..+|++.+|++|+.||.|.-||..++..- ..+.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 2468889999999999999999999999999998765321 0000
Q ss_pred --------------------------------------------------------------CCCCCeEEEEEcCCCCEE
Q 011256 361 --------------------------------------------------------------GHVGAVTAISFSENGYYL 378 (490)
Q Consensus 361 --------------------------------------------------------------~~~~~i~~l~~s~~~~~l 378 (490)
.-.....+++++|++..+
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 001234678899999999
Q ss_pred EEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcce
Q 011256 379 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 455 (490)
Q Consensus 379 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 455 (490)
++|+.|+ |+||.+.............+..+|++++|+|++.||+++... +.+|++..... ....+.. |.+.|
T Consensus 459 aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~F--HtakI 533 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAF--HTAKI 533 (603)
T ss_pred EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeee--eeeeE
Confidence 9999998 999999987765555555668999999999999999999887 89999843222 2222222 48899
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 456 TCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 456 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.|++|+|+..++|+|+.|-.|.||++...
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEEccCh
Confidence 99999999999999999999999999754
No 25
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.9e-34 Score=300.69 Aligned_cols=284 Identities=17% Similarity=0.302 Sum_probs=231.7
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----c----EEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEE
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----Q----IVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRV 255 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~----~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~i 255 (490)
.|...|.+++|+|+++++++|+.|+.|+||+.... . ....+. +...|.+++|++ ++.+|++++.||+|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 37889999999999999999999999999997531 1 222333 346799999987 4779999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc-CCC
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PDG 333 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 333 (490)
||+.++ ..+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++..+..+... ..+.++.|+ ++|
T Consensus 560 Wd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~------~~v~~v~~~~~~g 630 (793)
T PLN00181 560 WDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK------ANICCVQFPSESG 630 (793)
T ss_pred EECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC------CCeEEEEEeCCCC
Confidence 999875 67778889999999999997 7889999999999999999999888777532 568899995 579
Q ss_pred cEEEEEcCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC------cceeeeecCCC
Q 011256 334 LILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL------KNFRSFESSDS 405 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~------~~~~~~~~~~~ 405 (490)
.+|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++.+|++++.|+ |++||++.. ..+..+..+
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-- 707 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-- 707 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--
Confidence 999999999999999998765 567788899999999997 678999999998 999999853 345555544
Q ss_pred CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceE-------eeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 406 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC-------IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 406 ~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
...+..+.|++++.+|++|+.| +.+|+.......+.. ...+....+...|.+++|+|++.+|++|+.||.|
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 6778999999999999999988 889986322111100 0011112235679999999999999999999999
Q ss_pred EEecC
Q 011256 477 RVFGL 481 (490)
Q Consensus 477 ~iw~~ 481 (490)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99986
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-35 Score=256.14 Aligned_cols=283 Identities=21% Similarity=0.324 Sum_probs=240.5
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
-+..|+..|.+++.+|+.++++||+.|..-++|+..++.....+.+|...|+++.|+.+|.+|+||..+|.|+||...++
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.....+...-..|.-+.|||.+..|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.+++|..
T Consensus 139 ---~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-----Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 139 ---GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-----GHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ---ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-----CCCCCcccccccCCCceEEEEec
Confidence 4445554556778889999999999999999999999999976555554 56789999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecC---------------------------------------------------CCCCeEEEE
Q 011256 342 EALVKIWDVKSQANVAKFDG---------------------------------------------------HVGAVTAIS 370 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~---------------------------------------------------~~~~i~~l~ 370 (490)
||+|++||+.++.++..+.. +...+.|+.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988766540 011112222
Q ss_pred Ec---CCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEee
Q 011256 371 FS---ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK 444 (490)
Q Consensus 371 ~s---~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~ 444 (490)
|. ..=.+.++|+-|| |.|||+...+....+.. ...|..+.|.+ ..+|++++.+ ++.|+. ..+.+..
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~t~c~~g~v~~wDa----RtG~l~~ 362 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLLTACANGKVRQWDA----RTGQLKF 362 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchheeeccCceEEeeec----cccceEE
Confidence 22 2334677888888 99999988776655544 56799999998 7788888887 888887 6788888
Q ss_pred eecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 445 TFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 445 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.+.+| ...|.+++++|++++++++|.|++.+||+++
T Consensus 363 ~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 363 TYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEecC--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 88887 8899999999999999999999999999875
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=277.56 Aligned_cols=292 Identities=16% Similarity=0.301 Sum_probs=248.6
Q ss_pred cccceeeccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCC-CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC
Q 011256 174 YTQLASHPLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251 (490)
Q Consensus 174 ~~~~~~~~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 251 (490)
|-+........+|..+|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|.+++|+++|..|+++|.|+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 444444456788999999999999 889999999999999999766 899999999999999999999999999999999
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
.|++||++++ +++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+.. |-..|..+.|-
T Consensus 281 ~lKlwDtETG---~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-----hLg~i~~i~F~ 351 (503)
T KOG0282|consen 281 FLKLWDTETG---QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-----HLGAILDITFV 351 (503)
T ss_pred eeeeeccccc---eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-----hhhheeeeEEc
Confidence 9999999998 7777665 34578999999999 8999999999999999999997776653 34789999999
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeeec-CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC---cceeeeecCCC
Q 011256 331 PDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL---KNFRSFESSDS 405 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~---~~~~~~~~~~~ 405 (490)
++|..+++.+.|+.++||+.+.+..+..+. .+.....++..+|++.+++.-+.|+ |.+|.+... .....+..+..
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 999999999999999999999887665543 2344678899999999999999998 999986532 23345666655
Q ss_pred CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC-CeEEEEeCCCcEEEec
Q 011256 406 ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA-KYIAVGSMDRNLRVFG 480 (490)
Q Consensus 406 ~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~ 480 (490)
.+.-..+.|||||.+|++|+.+ +.+|++ ++...+..+..| .+.+..+.|+|.. ..+|+++.||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdw----kt~kl~~~lkah--~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDW----KTTKLVSKLKAH--DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeec----hhhhhhhccccC--CcceEEEEecCCCcceeEecccCceeEecC
Confidence 6677889999999999999999 777887 556666777775 7899999999954 5699999999999996
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4e-35 Score=243.49 Aligned_cols=257 Identities=25% Similarity=0.453 Sum_probs=220.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.+.|+.+.+.|+++.||+++.- .|++||+.++. ++.++.+|+..|+++.|..+|+++++||.||+++|||+...
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~--- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL--- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc---
Confidence 4679999999999999998754 79999998764 58999999999999999999999999999999999999873
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
.+.+.+ .|..+|+++..+|+...|++|..+|.|++||+....+...+.... ...|.++.+.|||.+++.+...|.
T Consensus 116 ~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~----~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 116 SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED----DTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC----CcceeeEEEcCCCcEEEEecCCcc
Confidence 444444 477999999999999999999999999999999988877765432 278999999999999999999999
Q ss_pred EEEEECCCC------ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC-cceeeeecCCCCCCeeEEEEcC
Q 011256 345 VKIWDVKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 345 i~iwd~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
.++|++-+. .++..++.|.+.|..+.+||++++|++++.|. ++||+..+. +....+.. +...+..++||.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g--h~rWvWdc~FS~ 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG--HQRWVWDCAFSA 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec--CCceEEeeeecc
Confidence 999998654 45667788999999999999999999999997 999999987 33334443 367999999999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
+|.||++|+.| .++|++ ...+.+..+.+| .....|++.
T Consensus 269 dg~YlvTassd~~~rlW~~----~~~k~v~qy~gh--~K~~vc~~l 308 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDL----SAGKEVRQYQGH--HKAAVCVAL 308 (311)
T ss_pred CccEEEecCCCCceeeccc----ccCceeeecCCc--ccccEEEEe
Confidence 99999999999 999998 556667777776 444555554
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-36 Score=287.65 Aligned_cols=207 Identities=28% Similarity=0.482 Sum_probs=197.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|.++|..+.|+|+.++|++++.|+++++|.+.+...+..++||..+|+++.|+|.|-+|||||.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.+.+.+.+|.+.|.|+.|||+..|+++||.|.++++||+.+|..+..|. ||..+|.+++|+|+|.+|++|+.
T Consensus 526 ---~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-----GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 526 ---KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-----GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred ---CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-----CCCCceEEEEEcCCCceEeeccc
Confidence 7888999999999999999999999999999999999999999998885 57799999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN 396 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~ 396 (490)
||.|.+||+.+++.+..+.+|.+.|.++.|+.+|..|++|+.|+ |++||+.+...
T Consensus 598 d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999999999999999999998 99999976543
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=274.10 Aligned_cols=281 Identities=20% Similarity=0.397 Sum_probs=253.4
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC-CcEEEEeCCCCCccce
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSEDGNYDC 266 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~ 266 (490)
..|+|.+|++..+.|++|-..|...+|.+....+++.+.-...+|..+.|+..|++|+.|+.. |.+-||+.... .-
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sY 342 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SY 342 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ce
Confidence 689999999999999999999999999999999999999888899999999999999998864 89999999886 56
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEE
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 346 (490)
+...++|...+++++++|||+++++|+.||.|+|||..++-|..++. .|.+.|+.+.|+..|+.+++.+.||+|+
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-----eHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-----EHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-----cCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 67778999999999999999999999999999999999999999987 4568999999999999999999999999
Q ss_pred EEECCCCceeeeecCC-CCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 347 IWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 347 iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
.||+...+..+++... .-...|++..|.|.++++|+.|. |.+|++.+++.+..+..| +++|.+++|+|.+..|++
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH--EgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH--EGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC--CCcceeeEEccccCeEEe
Confidence 9999999999998753 34678999999999999999997 999999999999999887 899999999999999999
Q ss_pred EecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 424 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 424 ~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
++.| |++|++-... ....++.. ...+..++|+|||+-|+++..||.|.+||...+
T Consensus 496 ~SWDkTVRiW~if~s~---~~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSS---GTVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ccccceEEEEEeeccC---ceeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 9999 9999984322 23333332 567899999999999999999999999998754
No 31
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-35 Score=247.85 Aligned_cols=288 Identities=19% Similarity=0.285 Sum_probs=241.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|..+|+.+.++.+|++|++++.|.+..||-..+|+.+.++.||++.|+|+....+.+.+++|+.|.++++||+.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG- 84 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG- 84 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC-
Confidence 4579999999999999999999999999999998899999999999999999999999999999999999999999998
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEEC-----CCeEEEEeCCC-------CeEEEEeecCCCCCCCCCceEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS-------GICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
+++..+. ...+|..+.|+++|++++.+.. .+.|.++|++. ..+...+. .+.+.++.+-|.
T Consensus 85 --k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~skit~a~Wg 156 (327)
T KOG0643|consen 85 --KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKITSALWG 156 (327)
T ss_pred --cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----CCccceeeeeec
Confidence 6666665 5678999999999998887754 46799999983 33344443 223789999999
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCC
Q 011256 331 PDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 408 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 408 (490)
|-+.+|++|..||.|.+||+++|. .+...+.|...|+.++++++..++++++.|. -++||+++...++++.. ..|
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t---e~P 233 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT---ERP 233 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee---ccc
Confidence 999999999999999999999984 4555577999999999999999999999998 99999999999999987 689
Q ss_pred eeEEEEcCCCCEEEEEecC--eEEEEEeecCC----------cceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 409 TNSVDFDHSGSYLAVASAD--IRVYQVASVKA----------DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
+++.+++|....++.|+.. --|=-...... ..+.+..+.+| -++|++++|+|+|+..++|+.||.|
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCcccccCCCCceE
Confidence 9999999998888877665 22211111000 11223344454 8999999999999999999999999
Q ss_pred EEecCCCC
Q 011256 477 RVFGLPGN 484 (490)
Q Consensus 477 ~iw~~~~~ 484 (490)
++..++.+
T Consensus 312 R~h~Fd~~ 319 (327)
T KOG0643|consen 312 RLHHFDSN 319 (327)
T ss_pred EEEEeccc
Confidence 99877653
No 32
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=243.59 Aligned_cols=252 Identities=25% Similarity=0.384 Sum_probs=220.1
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
+++++|.+.|.++.|++|.++++++|.||.+.|||.-+. ...+.+.-....|..++|+|.|+++++|+-|+...||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt---nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT---NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc---cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 678999999999999999999999999999999998876 45556666778999999999999999999999999999
Q ss_pred CCCC--eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEEE
Q 011256 303 LSSG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLA 379 (490)
Q Consensus 303 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~ 379 (490)
+.+. +....... ...+|.+.+.|+.|-+| ..|++++.|.+..+||+++++.+..|.+|.+.|.+++++| +++.++
T Consensus 126 ls~~d~~g~~~v~r-~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSR-ELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccccceeee-eecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 9855 22222221 14578899999999885 4688999999999999999999999999999999999999 899999
Q ss_pred EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceE
Q 011256 380 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT 456 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 456 (490)
+|+.|. .++||+|.+.+.+.|..+ ...|+++.|.|+|.-+++|+.| .++||+. .-..+..+........|+
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~gh--esDINsv~ffP~G~afatGSDD~tcRlyDlR----aD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGH--ESDINSVRFFPSGDAFATGSDDATCRLYDLR----ADQELAVYSHDSIICGIT 277 (343)
T ss_pred ecccccceeeeeccCcceeEeeccc--ccccceEEEccCCCeeeecCCCceeEEEeec----CCcEEeeeccCcccCCce
Confidence 999998 999999999999999887 7899999999999999999999 9999993 344555555544567899
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 457 CVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 457 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+++||..|++|++|..|..+.+||.-.++
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccc
Confidence 99999999999999999999999975443
No 33
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=8.2e-35 Score=258.01 Aligned_cols=283 Identities=22% Similarity=0.359 Sum_probs=246.5
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
....|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.|..++|+++.|.+++.++++++.|+.+++|+++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 456789999999999999999999999999999987666 677888999999999999999999999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
.. +...++.+|.+.|+++.|......+++|+.|.+|++||+....+...+... +.+..++.+ ...+++|
T Consensus 250 ~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~------S~cnDI~~~--~~~~~Sg 318 (459)
T KOG0288|consen 250 SL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG------SQCNDIVCS--ISDVISG 318 (459)
T ss_pred ch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc------ccccceEec--ceeeeec
Confidence 76 788999999999999999877777999999999999999999888877543 445555554 6689999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC--CCCeeEEEEcC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDH 416 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s~ 416 (490)
..|+.|++||.++..+......+ +.|+++..+++|..|.+++.|. +.++|+++......+..... ....+.+.|||
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 99999999999999999888866 4999999999999999998887 99999999988877765432 34588999999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
++.|+++|+.| ++||++ ...++...+........|+++.|+|.|.+|++++.++.+.+|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v----~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSV----FTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEc----cCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999 999998 5556666665543344799999999999999999999999994
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-34 Score=236.10 Aligned_cols=281 Identities=17% Similarity=0.294 Sum_probs=241.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
+...|+++|.++.|+-+|++.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|+.|.+||+.++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe--EEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
+..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. +++.+.. ....|.++.+. +..|++|
T Consensus 92 ---kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-----a~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 92 ---KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-----AKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ---eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-----hcCceeEEEec--ccEEEee
Confidence 8899999999999999999999999999999999999998654 3443332 23677777775 5689999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
+.||+++.||++.|.....+.+| +|++++|+++++..++++-++ +++.|-.+++.+..+..+.....-...++....
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 99999999999999887766654 899999999999999999998 999999999999999988766666777888889
Q ss_pred CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 419 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 419 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
..+++|+.| +.+|++ .....+..+..+ ..-.|+++.++|.-..|+++. ++.+.+|-
T Consensus 240 thV~sgSEDG~Vy~wdL----vd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDL----VDETQISKLSVV-STVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eeEEeccCCceEEEEEe----ccceeeeeeccC-CceeEEeeecccCccceeEec-CCceecee
Confidence 999999999 777777 445556666554 122388999999887777776 45566664
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=246.03 Aligned_cols=287 Identities=20% Similarity=0.362 Sum_probs=249.4
Q ss_pred ccCCCCCeEEEEecC---CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 183 HKTSKPGIVSLDIHY---SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
-.+|..+|..++|+| +|-+|++++.||.-.+-+-.+|.-+.+|.+|.+.|++.....+...-++++.|-+-+|||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 457889999999986 78899999999999999999999999999999999999998888889999999999999988
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
++ ..+..+. |..-|..++|+.+.++|++|+.+..+++||++..+-... ...+|+..|..+.|....+.|+++
T Consensus 90 tg---delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~----E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 90 TG---DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK----EISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hh---hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch----hhcCCCCcceeEEEeccCceEEee
Confidence 87 5556654 888999999999999999999999999999987543221 134778999999999988889998
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
+.|++|++||.++++.+.++. ...+|+++.++++|.+|.++...+|.+||..+...++.+.. ...|.+..++|+..
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKE 237 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC---ccccccccccCCCc
Confidence 999999999999999999987 46789999999999999998888899999999999888877 46799999999999
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeee-cCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 487 (490)
++++|+.| +..||+ .+...+..+ .+ |.++|.|+.|+|||...++|+.||+|++|....+.++
T Consensus 238 ~fVaGged~~~~kfDy----~TgeEi~~~nkg--h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDY----NTGEEIGSYNKG--HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEecCcceEEEEEec----cCCceeeecccC--CCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999 555565 334444444 44 4889999999999999999999999999998766554
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=267.57 Aligned_cols=281 Identities=21% Similarity=0.341 Sum_probs=253.1
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
+.+.|.+++|+|...+++++-.+|.|.|||.++...++.+.-..-+|.+..|-+..+++++|+.|..|+||+.++. +
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---e 88 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---E 88 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc---e
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCc
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEAL 344 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~ 344 (490)
.+..|..|.+.|.|++.||...+++++|.|-+|++||.+.+-...+. ..+|...|.+++|+| |.+.|++++-|++
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt----feGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT----FEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE----EcCcceEEEEEEecCCCccceeeeecccc
Confidence 88999999999999999999999999999999999999876544333 347788999999999 7799999999999
Q ss_pred EEEEECCCCceeeeecCCCCCeEEEEEcCCC--CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENG--YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~--~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
|++|.+.+..+..++++|...|+|+.|-+.| .+|++|++|. |+|||..+..++.++..| ...|..+.|+|.-.++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVFFHPELPII 242 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEEecCCCcEE
Confidence 9999999999999999999999999998854 6999999997 999999999999999987 6789999999999999
Q ss_pred EEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 422 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
++|+.| ++||+- .++.....+... ..+|.|++-.+.+..++.|.+.|.|. ..+-
T Consensus 243 isgsEDGTvriWhs----~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~-v~lg 298 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNS----KTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVT-VKLG 298 (794)
T ss_pred EEecCCccEEEecC----cceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEE-EEcc
Confidence 999999 999996 566666666543 67899999999888888888777664 3443
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.1e-36 Score=259.10 Aligned_cols=278 Identities=21% Similarity=0.417 Sum_probs=239.0
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
...+|.|+.+. ...+++|..|.+|+|||.++..++..+.||++.|.|+.| +.+.+++|+.|.+|+|||++++ +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg---e 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG---E 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC---c
Confidence 34689999876 668999999999999999999999999999999999999 6779999999999999999998 8
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
++.++.+|...|..+.|+ +.++++++.|.++.+||+.....+... ....||...|+.+.|+ .+++++++.|.+|
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~r--rVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHH--HHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 888999999999999997 789999999999999999876532211 1134777889999886 4599999999999
Q ss_pred EEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEE
Q 011256 346 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 424 (490)
++|++.+++.++++.+|...|-|+.+ .|+++++|+.|. |++||+..+.+++.+.++ +.-|.++.|+ .+.+++|
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD--NKRIVSG 416 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheeec--Cceeeec
Confidence 99999999999999999999999998 789999999997 999999999999999887 6789999995 6789999
Q ss_pred ecC--eEEEEEeecCCcce-----EeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 425 SAD--IRVYQVASVKADWN-----CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 425 ~~d--i~v~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
+.| |+||++........ ++.++.. |.+.|..+.| |...+++++.|.+|.|||+.++.+
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhh--ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 998 99999965433211 2333333 4889999999 667899999999999999976543
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=254.74 Aligned_cols=249 Identities=23% Similarity=0.419 Sum_probs=226.5
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
++...+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++ +...++.+|...|..+++++...|+++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 556678899999999999999999999999999999999997 78889999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEE
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
.||++..+.+..+. +|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-.-.++
T Consensus 219 CwDLe~nkvIR~Yh-----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH-----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhc-----cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 99999988776654 6679999999999999999999999999999999999999999999999999999888999
Q ss_pred EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEE
Q 011256 380 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATC 457 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 457 (490)
+|+.|+ |++||++.++....+..+ ...+.+++.+|....+++++.| ++-|++ .....+..+.+| .+-|++
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~w~~----p~g~f~~nlsgh--~~iint 365 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQWKL----PEGEFLQNLSGH--NAIINT 365 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCccceeccC----Cccchhhccccc--cceeee
Confidence 999998 999999999988887766 7889999999999999999999 999998 445555566665 778999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 458 VKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 458 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
++...|| ++++|++.|.+.+||..++-
T Consensus 366 l~~nsD~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 366 LSVNSDG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred eeeccCc-eEEEcCCceEEEEEecCcCc
Confidence 9998775 78889999999999998764
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-35 Score=268.89 Aligned_cols=256 Identities=25% Similarity=0.493 Sum_probs=227.4
Q ss_pred CcEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCe
Q 011256 219 GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 297 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 297 (490)
.+.+.++.+|+..|+++.|.| .+.+|++|+.|+.|+||++...+ .+++++.+|..+|..+.|+++|..|++++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 466788999999999999999 88999999999999999998744 899999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCC
Q 011256 298 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 376 (490)
|++||+++|+++..+... ..++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|.
T Consensus 282 lKlwDtETG~~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc
Confidence 999999999999999754 678999999988 8999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCc
Q 011256 377 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTG 453 (490)
Q Consensus 377 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~ 453 (490)
.++++++++ ++||+.+....+..+.... .....++..+|++.++++-+-+ +.+|..... ...+..+.|.+|.-.+
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~-~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP-FRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccc-cccCHhhhhcceeccC
Confidence 999999998 9999999887766555433 4567889999999999999988 666664322 2234456777887778
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 454 KATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 454 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.-..+.|||||.+|++|+.||.+.+||..+.
T Consensus 434 ys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred ceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 8889999999999999999999999998753
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-34 Score=271.18 Aligned_cols=293 Identities=22% Similarity=0.409 Sum_probs=241.0
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC--EEEEEeCCCcEEEEeCCCC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~ 261 (490)
..|++||.-++|+|.+.++++|+.||.++|||+..+.+...|+||.+.|.++.|+|+-. .|++|..|+++++||+...
T Consensus 102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 34899999999999999999999999999999999999999999999999999999655 6999999999999999875
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC-----------CC---------CCC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG-----------TD---------GRP 321 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~---------~~~ 321 (490)
. .++.++..|.+.|++++|.+++..++++|.|..+.+||+.+.+....+.... .. +..
T Consensus 182 ~--tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~ 259 (775)
T KOG0319|consen 182 R--TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS 259 (775)
T ss_pred c--hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC
Confidence 4 3788889999999999999999999999999999999996544332221100 00 000
Q ss_pred --------------------------------------------------------------------------------
Q 011256 322 -------------------------------------------------------------------------------- 321 (490)
Q Consensus 322 -------------------------------------------------------------------------------- 321 (490)
T Consensus 260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~l 339 (775)
T KOG0319|consen 260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHL 339 (775)
T ss_pred ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceE
Confidence
Q ss_pred --------------------------CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce----e---------------
Q 011256 322 --------------------------EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN----V--------------- 356 (490)
Q Consensus 322 --------------------------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~--------------- 356 (490)
..|.++....+|.+|++|+.|.++++|.++++.. +
T Consensus 340 aVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 340 AVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence 0111333234455677777777777775522110 0
Q ss_pred -------------------------------e------eecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCccee
Q 011256 357 -------------------------------A------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 398 (490)
Q Consensus 357 -------------------------------~------~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 398 (490)
. +...|...|+|++++|+..+++|||.|. .+||++.......
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE
Confidence 0 0014778899999999999999999997 9999999888888
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
.+..| ...+.++.|+|..+.++++|.| ++||.+ .++.++++|.+| ...|..+.|-.+|..|++++.||-|
T Consensus 500 vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i----s~fSClkT~eGH--~~aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 500 VLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSI----STFSCLKTFEGH--TSAVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EeeCC--ccceEEEEeccccceeEeccCCceEEEEEe----ccceeeeeecCc--cceeEeeeeeeCCcEEEeccCCCcE
Confidence 88877 7899999999999999999999 999999 789999999997 8899999999999999999999999
Q ss_pred EEecCCCCCC
Q 011256 477 RVFGLPGNDA 486 (490)
Q Consensus 477 ~iw~~~~~~~ 486 (490)
++|++.+++.
T Consensus 572 KlWnikt~eC 581 (775)
T KOG0319|consen 572 KLWNIKTNEC 581 (775)
T ss_pred EEEeccchhh
Confidence 9999988753
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-34 Score=269.54 Aligned_cols=288 Identities=23% Similarity=0.388 Sum_probs=251.3
Q ss_pred CCCCCeEEEEec-CCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC-C
Q 011256 185 TSKPGIVSLDIH-YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-G 262 (490)
Q Consensus 185 ~h~~~I~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~ 262 (490)
+-.+.|.+++|- |..+++|+++..+.+++|+..+..+. .+.||+..|.++....+|.+|+||+.|.++++|.++.+ .
T Consensus 321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 345778888864 56789999999999999998876665 88999999999996668889999999999999988432 2
Q ss_pred ccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEE---e-ecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQ---V-SDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~---~-~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
...++....+|...|.+++++..+ .+|+++|.|+++++|++...+.... + .......|...|+|++++|+..+++
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA 479 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA 479 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence 335666778999999999997655 6899999999999999987322111 1 0111335778999999999999999
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
+|+.|.+.+||++.......++.+|...|.|+.|+|+.+.++++|.|+ |+||.+.+..++++|.+| ...|..+.|-.
T Consensus 480 T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH--~~aVlra~F~~ 557 (775)
T KOG0319|consen 480 TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH--TSAVLRASFIR 557 (775)
T ss_pred ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc--cceeEeeeeee
Confidence 999999999999999999999999999999999999999999999998 999999999999999987 78999999999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
+|..|++++.| +++|++ ++..|+.++..| ...|.++..++.+.++++|+.||.|.+|.=
T Consensus 558 ~~~qliS~~adGliKlWni----kt~eC~~tlD~H--~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNI----KTNECEMTLDAH--NDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred CCcEEEeccCCCcEEEEec----cchhhhhhhhhc--cceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999998 999999 778899999887 889999999999999999999999999963
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=232.79 Aligned_cols=282 Identities=22% Similarity=0.356 Sum_probs=240.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE--EeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT--TLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~ 259 (490)
...|...|.+++|+.+|..|++|+.|+++.+|++....... ...+|.+.|-.++|+| +.+.|++++.|.+|++||+.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 34567789999999999999999999999999998765544 4568999999999988 55689999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
.+ ++........+. .-+.|+|+|.+++.++.|..|.+.|.++.+........ ..+..++|+.++.+|+..
T Consensus 96 ~~---k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~------~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 96 SG---KCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK------FEVNEISWNNSNDLFFLT 165 (313)
T ss_pred cC---cEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc------ceeeeeeecCCCCEEEEe
Confidence 87 666666544343 45789999999999999999999999988877665433 567889999888888888
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
+..|.|.|.....-+++..++.|.....||.|+|+|++|++|+.|. +.+||+...-+.+.+... .-+|..+.|+.+|
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~dg 243 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSHDG 243 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEeccCc
Confidence 8889999999999999999999999999999999999999999998 999999999999999877 7899999999999
Q ss_pred CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC---------CcEEEecCCC
Q 011256 419 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD---------RNLRVFGLPG 483 (490)
Q Consensus 419 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~v~iw~~~~ 483 (490)
++|++++.| |-|-++. ++..+..++ +.++...++|+|...+||.+++| |.|++|.+++
T Consensus 244 ~~lASaSEDh~IDIA~ve----tGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEVE----TGDRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred ceeeccCccceEEeEecc----cCCeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 999999999 7776663 344444443 26788999999999999988765 6788888764
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=243.09 Aligned_cols=295 Identities=19% Similarity=0.303 Sum_probs=247.5
Q ss_pred ccccceeeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE--------eccCccCEEEEEEeeCCCEE
Q 011256 173 RYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT--------LSGHSKKVTSVKFVTEGDLF 244 (490)
Q Consensus 173 ~~~~~~~~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~l~~~~~~~~l 244 (490)
+|.......+.-+.++.+-|..|+|||++|++|+.||.|-+||..+|+..+. +.-+..+|.|+.|+.|..+|
T Consensus 199 ~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 199 RYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred hchHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 3444444445556677899999999999999999999999999999876543 33578899999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 011256 245 LTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 323 (490)
Q Consensus 245 ~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 323 (490)
++|+.||.|+||.+.++ .|++.|. .|+..|+|+.|+.++..+++++.|.++++.-+.+|+++..+. +|.+.
T Consensus 279 AsGsqDGkIKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-----GHsSy 350 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-----GHSSY 350 (508)
T ss_pred hccCcCCcEEEEEEecc---hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-----Ccccc
Confidence 99999999999999998 8888887 899999999999999999999999999999999999988776 66789
Q ss_pred ceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC--CCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCCcceee
Q 011256 324 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRS 399 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~ 399 (490)
|+...|.+||..+++++.||+|++|+.++.+++.+++. ...+|+++-.-| +...+++|...+ |+|.++. ++.++.
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 99999999999999999999999999999999999865 345788887777 456777777776 9999876 556666
Q ss_pred eecCCC-CCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 400 FESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 400 ~~~~~~-~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
+..... .+...+.+.+|.|.++++.+.|..+|-+.. ..+....++..| ...|..++-+|..+.|++-+.||.+++
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~--~sG~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV--LSGKLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe--ecCceeeeeecc--cccccccccCcccchhhhhcccchhhh
Confidence 655432 455677889999999999999955554432 345555666665 678889999999999999999999999
Q ss_pred ec
Q 011256 479 FG 480 (490)
Q Consensus 479 w~ 480 (490)
|.
T Consensus 506 Wk 507 (508)
T KOG0275|consen 506 WK 507 (508)
T ss_pred cC
Confidence 95
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=270.98 Aligned_cols=283 Identities=23% Similarity=0.376 Sum_probs=250.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
...|..++|+|...+++++--.|.|.+||..-+.++..|..|.++|..++|+|.+.+|++|+.|-.|+||+..+. +|
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rc 85 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RC 85 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---ee
Confidence 457889999999999999999999999999999999999999999999999999999999999999999999886 89
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEE
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 346 (490)
+.++.+|-+.|..+.||+.-..++++|.|.+|+||+..+++++..+. ||...|.|..|+|...++++++-|.+|+
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-----GHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-----GHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-----cCceEEEeeccCCccceEEEecccceEE
Confidence 99999999999999999999999999999999999999999999886 6678999999999999999999999999
Q ss_pred EEECCCCc-----------------------------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc
Q 011256 347 IWDVKSQA-----------------------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN 396 (490)
Q Consensus 347 iwd~~~~~-----------------------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~ 396 (490)
+||+..-+ ....+++|...|+.++|+|.-.++++|++|. |++|.+...+.
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99984210 1234578999999999999999999999998 99999887665
Q ss_pred eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 397 FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 397 ~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
-..-...+|...|.++.|+|...++++.+.| ++||++ .....+.+|... .+..+.++-+|..+++++| .|+
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm----~kRt~v~tfrre--ndRFW~laahP~lNLfAAg-HDs 313 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM----TKRTSVQTFRRE--NDRFWILAAHPELNLFAAG-HDS 313 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec----ccccceeeeecc--CCeEEEEEecCCcceeeee-cCC
Confidence 4444445568899999999999999999999 999999 445566666543 6788999999999877766 577
Q ss_pred cEEEecCCCC
Q 011256 475 NLRVFGLPGN 484 (490)
Q Consensus 475 ~v~iw~~~~~ 484 (490)
.+.||.++..
T Consensus 314 Gm~VFkleRE 323 (1202)
T KOG0292|consen 314 GMIVFKLERE 323 (1202)
T ss_pred ceEEEEEccc
Confidence 7888988754
No 45
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-33 Score=239.54 Aligned_cols=290 Identities=24% Similarity=0.422 Sum_probs=244.1
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe---
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ--- 257 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd--- 257 (490)
....+|+++|..++.....+++.+++.|.+.+||.++++.++.++.||.+.|+++.|++.+.++++++.|++-.||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 46779999999999988888999999999999999999999999999999999999999999999999999999996
Q ss_pred ---CCC-----------------------------C--CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 011256 258 ---GSE-----------------------------D--GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 303 (490)
Q Consensus 258 ---~~~-----------------------------~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 303 (490)
+.. + ....++..+.+|.+.|.+..|...|+.+++++.|.+..+||+
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV 301 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence 111 0 001245567889999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
+++..+..+. +|....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|..+ ..+++|+
T Consensus 302 Etge~v~~Lt-----GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgS 375 (481)
T KOG0300|consen 302 ETGEVVNILT-----GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGS 375 (481)
T ss_pred ccCceecccc-----CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecC
Confidence 9999887765 66788999999999999999999999999999854 457788999999999999865 5678888
Q ss_pred CCC-EEEEECCCCc-ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec---CCCCCcce
Q 011256 383 HDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP---DLSGTGKA 455 (490)
Q Consensus 383 ~d~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~---~~~~~~~v 455 (490)
+|. |+|||+++.. ++.++.. ..+++.++++..+..|+.-..+ +++|++. +..+..++ ...|...|
T Consensus 376 DDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-----G~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-----GNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred CCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecC-----CCccccCCcccccccceee
Confidence 886 9999999865 4556655 6789999999988899988887 9999983 22232222 12247789
Q ss_pred EEEEEcCCC--CeEEEEeCCCcEEEecCCCC
Q 011256 456 TCVKFGPDA--KYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 456 ~~~~~s~~~--~~l~s~~~dg~v~iw~~~~~ 484 (490)
+|++|..+. .-|+++|.|..+.=|++...
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEeccc
Confidence 999998653 34889999999999998654
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-35 Score=257.69 Aligned_cols=243 Identities=21% Similarity=0.370 Sum_probs=216.3
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.+...|.++|.++.|++++.++++|+.+|.|++|+..-. .++.+.. |...|++++|+|+...|++++.||+|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 366789999999999999999999999999999997644 4444444 55999999999999999999999999999987
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
.. +....+.+|.-.|.+++|||....++++|.|..|++||.+++.++.++- +|...|..+.|+|++++|+++
T Consensus 211 ~~---kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-----~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 211 MP---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-----GHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred CC---chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-----hccceEEEEEEcCCCCeeEEc
Confidence 75 5556679999999999999999999999999999999999999988765 566889999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
+.|..+++||+++.+.+..+.+|...++++.|+| +..+|.+|+.|+ |..|.+...+++..+.. .|...|.+++|+|-
T Consensus 283 skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPL 361 (464)
T ss_pred cCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeecccc
Confidence 9999999999999999999999999999999999 467888888888 99999886666655543 44889999999999
Q ss_pred CCEEEEEecC--eEEEEE
Q 011256 418 GSYLAVASAD--IRVYQV 433 (490)
Q Consensus 418 ~~~l~~~~~d--i~v~~~ 433 (490)
|.+|++|+.| +++|.-
T Consensus 362 Ghil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 362 GHILATGSNDRTVRFWTR 379 (464)
T ss_pred ceeEeecCCCcceeeecc
Confidence 9999999998 999975
No 47
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=240.39 Aligned_cols=292 Identities=18% Similarity=0.347 Sum_probs=241.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------------------CcEEEEeccCccCEEEEEEeeCCCEE
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGDLF 244 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~l 244 (490)
...|++++.+-+|+|||.++++|+.|..|+|.|++. ...++++..|...|+++.|+|....|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 457899999999999999999999999999999751 14577888999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCc
Q 011256 245 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 245 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 324 (490)
++|+.|++|++||+......+....+ ....+|.+|.|||.|.++++|..-.++++||+++.++...-. ....|...|
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai 264 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAI 264 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--cccccccce
Confidence 99999999999999764222222222 345689999999999999999999999999999998876654 255788999
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC-CC-CCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HV-GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~-~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
+++.+++.|++.++|+.||.|++||--+++++.++.. |. ..|.+..|..||+|+++.+.|. +++|.+.+++++..+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 9999999999999999999999999999999998853 54 4799999999999999999998 9999999999998887
Q ss_pred cCCCCC---CeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 402 SSDSET---PTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 402 ~~~~~~---~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
..+..+ --+...|+....|++.-... +.-|+-.. ... ..+....|.+.+..+.-||.+.-+++|+.|-.
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt----adr-~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART----ADR-VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccc----hhh-hhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 753222 23456688888888776554 67777532 211 12223346899999999999999999999999
Q ss_pred EEEecCC
Q 011256 476 LRVFGLP 482 (490)
Q Consensus 476 v~iw~~~ 482 (490)
.++|--.
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999643
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=249.27 Aligned_cols=298 Identities=19% Similarity=0.333 Sum_probs=245.7
Q ss_pred hhccccceeeccccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC
Q 011256 171 LERYTQLASHPLHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA 249 (490)
Q Consensus 171 ~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 249 (490)
...|.+....+.++.| ..|.+++|+|... -+|+.+ .-.+.||+..+.....++......|.+++|..||.+|++|..
T Consensus 11 ~~~w~~~~~~~~~ke~-~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEH-NSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred chhhhhhccccccccc-CcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence 3345555555566665 7899999999654 233333 357999999888888878778899999999999999999999
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
.|.|+|||..+. ..+..+..|..+|..+.|+|++ ..|++|+.|+.+++||+.+...... ..+|...|.|.+
T Consensus 89 sG~V~vfD~k~r---~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~-----l~~htDYVR~g~ 160 (487)
T KOG0310|consen 89 SGHVKVFDMKSR---VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE-----LSGHTDYVRCGD 160 (487)
T ss_pred cCcEEEeccccH---HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE-----ecCCcceeEeec
Confidence 999999996553 5677889999999999999976 5677888899999999999885323 347789999999
Q ss_pred EcCC-CcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCC
Q 011256 329 FHPD-GLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 329 ~~~~-~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~ 406 (490)
|+|. +.++++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|..+++++...|+|||+-++........ .|.
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~-~H~ 238 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMF-NHN 238 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhh-ccc
Confidence 9994 569999999999999999987 6666766 88899999999999999999988899999996654433322 137
Q ss_pred CCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 407 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
..|+|+.+..++..|++++-| ++||++ .++..+..+.. .++|.+++.+|++..++.|..+|.+.+=+....
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~----t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDT----TNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEc----cceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 889999999999999999999 999997 67888877765 789999999999999999999999887755544
Q ss_pred CCC
Q 011256 485 DAP 487 (490)
Q Consensus 485 ~~~ 487 (490)
+.|
T Consensus 312 ~k~ 314 (487)
T KOG0310|consen 312 KKP 314 (487)
T ss_pred cCC
Confidence 433
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=246.06 Aligned_cols=241 Identities=27% Similarity=0.500 Sum_probs=223.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
..++|.+.+..+.|+..|.++++++.|=.+++||..+ .+++..+.+|...|.++.|-|.|+++++++.|.+|+.|++.+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t 224 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT 224 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence 4678999999999999999999999999999999876 566778889999999999999999999999999999999999
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC--------
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-------- 332 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------- 332 (490)
+ .++.++.+|...|..+..+.||..+++++.|.++++|-+.++.+...+. +|..+|.|++|.|.
T Consensus 225 g---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 225 G---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-----EHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred c---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-----ccccceEEEEecccccCcchhh
Confidence 7 8999999999999999999999999999999999999999998776665 45578889988763
Q ss_pred -------CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC
Q 011256 333 -------GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD 404 (490)
Q Consensus 333 -------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~ 404 (490)
+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+|+ +++||+++.++...+..+
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah- 375 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH- 375 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-
Confidence 25899999999999999999999999999999999999999999999999998 999999999999999876
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC--eEEEE
Q 011256 405 SETPTNSVDFDHSGSYLAVASAD--IRVYQ 432 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~d--i~v~~ 432 (490)
..-++++.|+.+..++++|+-+ +++|.
T Consensus 376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -cceeEEEecCCCCceEEeccccceeeeee
Confidence 6789999999999999999998 88886
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=260.64 Aligned_cols=287 Identities=18% Similarity=0.319 Sum_probs=251.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|+..|.+++++.+...+++|+ .+.+++|+..+.+++.++... .+.+..|.|.++++++|...|.+.+||+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~- 444 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA- 444 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh-
Confidence 357899999999998877777664 568999999999999998743 7999999999999999999999999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC-----CeEEE--EeecCCCCCCCCCceEEEEcCCCcE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLT--QVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
..+.+...|.+.|+.++..|++..+++||.|.+|++||..- +.... .+.......-+..|.|+.++|||++
T Consensus 445 --~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 445 --SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred --hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 56667779999999999999999999999999999999742 11111 1111111123478999999999999
Q ss_pred EEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEE
Q 011256 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 414 (490)
|+++--|.+|+||-+.+-+-...+.||.-||.|+..+||++.++|||.|. |+||-+.-+.+-+.+-.| ...|.++.|
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH--dDSvm~V~F 600 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH--DDSVMSVQF 600 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc--cCceeEEEE
Confidence 99999999999999999999999999999999999999999999999997 999999999999888776 789999999
Q ss_pred cCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 415 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 415 s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
-|....+++++.| ++-||- ..+..+..+.+| ...|.|++.+|+|.++++++.|..|++|.-..
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg----~kFe~iq~L~~H--~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDG----EKFEEIQKLDGH--HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cccceeEEEecCcceEEeech----hhhhhheeeccc--hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999 888885 667888888886 88999999999999999999999999998754
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=235.09 Aligned_cols=253 Identities=22% Similarity=0.414 Sum_probs=221.8
Q ss_pred EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEE
Q 011256 221 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 300 (490)
Q Consensus 221 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 300 (490)
++..+.+|.+.|..+.|+|+|.+|++|+.|..|.+|++.... +....+++|.+.|..+.|.++++.+++++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 345677999999999999999999999999999999976543 456677899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEE
Q 011256 301 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
||.++|+.+..+. +|..-++++....-| .++.+|+.||++++||+|+...++++. ....++++.|...+..+.
T Consensus 117 wD~~tG~~~rk~k-----~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 117 WDAETGKRIRKHK-----GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred Eecccceeeehhc-----cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccccee
Confidence 9999999988776 445677777744444 577788999999999999999888886 456899999999999999
Q ss_pred EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCc--c
Q 011256 380 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTG--K 454 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~--~ 454 (490)
+|+-|+ |++||+++......+..+ ..+|+.+..+++|.++.+-+-| +++|++........++..+.++.|.- .
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred eccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 999998 999999999999888887 7899999999999999999888 99999988777778888888876543 4
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 455 ATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 455 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
...++|+|++.++.+|+.|..+++||...
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cceeeccCCCCccccccccceEEEeeccc
Confidence 45679999999999999999999999865
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-32 Score=264.33 Aligned_cols=253 Identities=29% Similarity=0.516 Sum_probs=217.3
Q ss_pred EEeccC-ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEE
Q 011256 223 TTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 301 (490)
Q Consensus 223 ~~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 301 (490)
..+.+| ...|.++.|+++|+.|++++.|+.+++|+...... .....+.+|...|.+++|+|++.++++++.|++|++|
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344343 78899999999999999999999999999965421 2566668999999999999999999999999999999
Q ss_pred eC-CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEE
Q 011256 302 DL-SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 302 d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 380 (490)
|+ ..+..+..+. +|...|++++|+|+|+++++|+.|++|+|||+++++++..+.+|.+.|++++|+++|.+|++
T Consensus 231 d~~~~~~~~~~l~-----gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 231 DLKDDGRNLKTLK-----GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred eccCCCeEEEEec-----CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 99 4457777765 67789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC-EEEEECCCCc--ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCC-cc
Q 011256 381 AAHDG-VKLWDLRKLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT-GK 454 (490)
Q Consensus 381 ~~~d~-i~iwd~~~~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~-~~ 454 (490)
++.|+ |+|||+.++. +...+.......+++++.|+|++.++++++.| +++|++ ........+..|... ..
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l----~~~~~~~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDL----RSGKSVGTYTGHSNLVRC 381 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEc----cCCcceeeecccCCccee
Confidence 99998 9999999998 45555554332279999999999999999999 999999 556666777776432 25
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 455 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 455 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+.+...++.+.++++|+.|+.|++|++.+..
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 5566678899999999999999999998644
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=225.67 Aligned_cols=247 Identities=20% Similarity=0.339 Sum_probs=220.8
Q ss_pred EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEE
Q 011256 221 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 300 (490)
Q Consensus 221 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 300 (490)
....+..|.++|.++.|+-+|+|.++++.|.+|++|+...+ .+++++.+|..+|..++.+.++..|++|+.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 35567889999999999999999999999999999999886 899999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC--ceeeeecCCCCCeEEEEEcCCCCEE
Q 011256 301 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYL 378 (490)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l 378 (490)
||+++|+....+. +|...|+.+.|+.+...+++|+.|..+++||.++. ++++.+......|.++.. .+..+
T Consensus 86 wDV~TGkv~Rr~r-----gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heI 158 (307)
T KOG0316|consen 86 WDVNTGKVDRRFR-----GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEI 158 (307)
T ss_pred EEcccCeeeeecc-----cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEE
Confidence 9999999998876 56689999999999999999999999999999865 788888888889999998 46689
Q ss_pred EEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcce
Q 011256 379 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 455 (490)
Q Consensus 379 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 455 (490)
++|+.|| ++.||+|.+.....+- ..+|+++.|+++++..++++-+ +++.+- .+++.+..+.+|.....-
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk----~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDK----ETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeeccc----chhHHHHHhcccccceee
Confidence 9999998 9999999988765544 5689999999999999999988 888875 667788888888666666
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 456 TCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 456 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...+++.....+++|+.||.|++||+-...
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccce
Confidence 778888888899999999999999997643
No 54
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=239.11 Aligned_cols=285 Identities=20% Similarity=0.334 Sum_probs=233.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~ 261 (490)
...++|+++.|+|...++++++.||+++||.+. ....++.+.--..+|.+++|.|+|. .+++++.....+.||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 345799999999999999999999999999765 3455677766778999999999999 8999999999999999885
Q ss_pred Cccceeeeecccc-cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 262 GNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 262 ~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
. ...+..+.++. ..+....++|++++|+..|..|.|.+....+++.+..+... +.|..++|+.|+..|++.+
T Consensus 291 k-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 291 K-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLASG 363 (514)
T ss_pred c-cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec------cEEeeEEEecCCcEEEEEc
Confidence 3 23344444444 45777888999999999999999999999999999888765 6799999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecCCCC-CeEEEEEcCCCCEEEEEeCCC-EEEEECCC------CcceeeeecCCCCCCeeEE
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK------LKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~------~~~~~~~~~~~~~~~i~~i 412 (490)
.+|.|++||++...+++.+....+ .-++++.+++|.||++|++.| |.|||..+ .+++..+... ...|+++
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl 441 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSL 441 (514)
T ss_pred CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeee
Confidence 999999999999999998863221 336677889999999999999 99999653 3444444443 6789999
Q ss_pred EEcCCCCEEEEEecC----eEEEEEeecCCcceEeeeecCC-CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 413 DFDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDL-SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d----i~v~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.|++++++|+.++.. +++..+. .......++.. ..-+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvP----S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVP----SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEecc----ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999999875 8888873 23333333322 125679999999999999999999999999874
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4e-32 Score=247.19 Aligned_cols=293 Identities=21% Similarity=0.317 Sum_probs=228.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE----EEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI----VTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
..+|...|.++++.|.|-.|++|+.|..|++||+..... .+.+. .-...|.++.|++.|+.|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 356677899999999999999999999999999864321 22222 3345699999999999988888889999999
Q ss_pred CCCCCccc---------eeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCceE
Q 011256 258 GSEDGNYD---------CKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 258 ~~~~~~~~---------~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~ 326 (490)
-......+ -...-++|...++|.+|||.. ..|++++.||++++||++..+. ...+......+....++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 76532111 122346899999999999976 5899999999999999986543 333433334455678899
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECCCCce---eeeecCCCC--CeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc-ceee
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLK-NFRS 399 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-~~~~ 399 (490)
++|++||.+||+|+.||.|.+||.++... ...-+.|.. .|+||.||++|++|++-+.|+ +++||++..+ ++..
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 99999999999999999999999865422 222355766 899999999999999999887 9999999865 4555
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC--------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD--------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d--------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
........+-+.++|||+.++|++|+.- +.+|+. .++..+..+... ...|..+.|+|.-+.|++|+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~----~t~d~v~ki~i~--~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR----MTLDTVYKIDIS--TASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec----cceeeEEEecCC--CceEEEEeecchhhheeeec
Confidence 5555456678899999999999999763 455554 445555555443 67889999999999999999
Q ss_pred CCCcEEEecC
Q 011256 472 MDRNLRVFGL 481 (490)
Q Consensus 472 ~dg~v~iw~~ 481 (490)
.||.++||-=
T Consensus 477 gdG~~~vyYd 486 (641)
T KOG0772|consen 477 GDGTAHVYYD 486 (641)
T ss_pred CCCceEEEEC
Confidence 9999999743
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-32 Score=250.09 Aligned_cols=234 Identities=22% Similarity=0.378 Sum_probs=212.2
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
-..-+|.+..|-+..+++++|++|..|+||+..+++.+..|..|.+.|.|++.+|...+++++|.|-+|++||.+.. +
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--w 130 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--W 130 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--e
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999764 6
Q ss_pred ceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--cEEEEEcC
Q 011256 265 DCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTS 341 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~ 341 (490)
.+.+++.+|...|.+++|+|. .+.|++++-|++|++|.+.+..+..++. +|..+|+|+++-+.| .+|++|+.
T Consensus 131 a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 131 ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-----ccccCcceEEeccCCCcceEEecCC
Confidence 899999999999999999995 5799999999999999999988887775 667999999998844 79999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
|.+|+|||..+..|+.++.+|...|..+.|+|.-.++++|++|| ++||...+.+....+... ...+.+++-.+.+..
T Consensus 206 D~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~ 283 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGK 283 (794)
T ss_pred CceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCe
Confidence 99999999999999999999999999999999999999999999 999999888777666654 567888887777777
Q ss_pred EEEEecC
Q 011256 421 LAVASAD 427 (490)
Q Consensus 421 l~~~~~d 427 (490)
+++|..+
T Consensus 284 i~vG~De 290 (794)
T KOG0276|consen 284 IAVGFDE 290 (794)
T ss_pred EEEeccC
Confidence 7777665
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-33 Score=243.82 Aligned_cols=279 Identities=22% Similarity=0.347 Sum_probs=231.6
Q ss_pred cCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 184 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
.+|.++|.|++=+|.. ..+++|+.||.|+|||+.+..+..++..|.+.|..|++.. ..+++++.|++|+.|.++.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-- 138 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-- 138 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC--
Confidence 7899999999999976 7899999999999999999999999999999999999965 6789999999999999876
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEcC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTS 341 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~ 341 (490)
....++. ....+..|.-+..++.|++||. .|.|||.....++..+.... ..|.++.|+|-. .+|+++..
T Consensus 139 --~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~-----Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 139 --PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA-----DSISSVKFNPVETSILASCAS 208 (433)
T ss_pred --Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCC-----CceeEEecCCCcchheeeecc
Confidence 3555554 3456778888878889999887 69999999888888887542 678999999954 78888889
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCeeEEEEcCCCC
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
|+.|.+||++++.++..+.. ...-+.|+|+|++..++++++|. ++.||++.... +..+..+ .+.|.++.|+|.|+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQ 285 (433)
T ss_pred CCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCCCcc
Confidence 99999999999998877652 34568899999999999999997 99999998654 3444443 78899999999999
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
-+++|+.| |+||..+.+.. ...+... -...|.|+.||.|.+|+++|++|+.|++|.....
T Consensus 286 EfvsgsyDksIRIf~~~~~~S----RdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHS----RDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hhccccccceEEEeecCCCcc----hhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 99999999 99999843221 1111111 1457999999999999999999999999987644
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-30 Score=219.44 Aligned_cols=285 Identities=22% Similarity=0.343 Sum_probs=239.7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC--CCcEEEEeCCCCCc
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGN 263 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~ 263 (490)
-.+.|+++.|+++|.++++++.|.+++|||..+++.+.++..+.-.|..++|......++.++. |.+|+..++.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN-- 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN-- 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--
Confidence 3568999999999999999999999999999999999999988889999999877776776766 889999999887
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
+.++.+.||...|+.|..+|-++.|++++.|++|++||++..++...+.. ..-..++|.|.|.++|++....
T Consensus 91 -kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 91 -KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred -ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCC
Confidence 89999999999999999999999999999999999999998888776653 2345789999999999999888
Q ss_pred cEEEEECCCC--ceeeeec---CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCC-CeeEEEEcC
Q 011256 344 LVKIWDVKSQ--ANVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET-PTNSVDFDH 416 (490)
Q Consensus 344 ~i~iwd~~~~--~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~-~i~~i~~s~ 416 (490)
.|++||+|.- .+..++. +.....+.|.|+|||++|+.+...+ +++.|.-++.....+..+.... .....+|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999864 3444443 3456889999999999999999998 9999999999888888765433 235788999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 487 (490)
+++++++|+.| +.+|++ .....+..+.+. +.+++.++.|+|.-.+++++ +..+.+|=....+.+
T Consensus 243 ds~Fvl~gs~dg~i~vw~~----~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~~~ 308 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNL----ETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDALP 308 (311)
T ss_pred CCcEEEEecCCCcEEEEEc----CCCcEeeEecCC-CCCCccccccCCceeeeeec--CceEEEEeccccccC
Confidence 99999999998 999998 555666666653 47789999999987777766 467888866544433
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-31 Score=247.21 Aligned_cols=275 Identities=23% Similarity=0.338 Sum_probs=237.7
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
+-++|+ ..+.|++|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||.... +.+..+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTL 255 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccc
Confidence 446788 456777765 347999999999877666666899999999999999999999999999999876 666777
Q ss_pred cc-cccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEE
Q 011256 271 KD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 349 (490)
Q Consensus 271 ~~-h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 349 (490)
.+ |...|-+++|. +..+.+|+.|+.|..+|++..+..... ..+|...|..+.|++|+.++++|+.|+.+.|||
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~----~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST----LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh----hhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 77 99999999997 788999999999999999988766552 446779999999999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEcCC-CCEEEEEeCC--C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 350 VKSQANVAKFDGHVGAVTAISFSEN-GYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
.....++..+..|...|..++|+|- ..+||+|+.. + |++||..++..+..+.. ...|.++.|++..+-|+++.
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence 9888999999999999999999995 6788887654 4 99999999988887776 68899999999987777764
Q ss_pred cC----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 426 AD----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 426 ~d----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.. +.||.+ .....+..+.+| ...|..++++|||..+++|+.|.++++|++-+..
T Consensus 407 G~s~n~i~lw~~----ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 407 GYSENQITLWKY----PSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CCCCCcEEEEec----cccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 43 999999 456677777776 7789999999999999999999999999997743
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=258.99 Aligned_cols=290 Identities=19% Similarity=0.260 Sum_probs=216.5
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEE-------------ee---CCC--
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKF-------------VT---EGD-- 242 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-------------~~---~~~-- 242 (490)
.+...|++.|.++.|++||+|||+||.||.|+||.+...+.... +...-.++.+ ++ .++
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc---cccccchhhhhhhhccccCcccccccccccccc
Confidence 35558999999999999999999999999999999765332111 1111111111 11 001
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 322 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 322 (490)
..-.+.....+.+-+..-.-..+++..+.+|.+.|..|.|+ .+++|++++.|.+|++|++....++..|. |..
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~------Hnd 410 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS------HND 410 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe------cCC
Confidence 11112222222111110001126778889999999999999 57799999999999999999999999985 558
Q ss_pred CceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeee
Q 011256 323 GYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 323 ~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 400 (490)
.|+|++|+| |.++|++|+-||.|+||++...+.+.-.. -..-|++++|.|||++.++|+.+| +++|+.+..+....+
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 999999999 88999999999999999998777665555 347899999999999999999999 999999988776555
Q ss_pred ecCCC------CCCeeEEEEcCCCC-EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 401 ESSDS------ETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 401 ~~~~~------~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
....+ ...|+.+.|.|... .+++.+.| |+||+. ....++..|.+......-....|+.||++|++++
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~----~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG----RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec----cchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 44322 23699999997654 35555555 999997 4556667777665555667788999999999999
Q ss_pred CCCcEEEecCCCCC
Q 011256 472 MDRNLRVFGLPGND 485 (490)
Q Consensus 472 ~dg~v~iw~~~~~~ 485 (490)
+|..|+||+++...
T Consensus 566 eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 566 EDSWVYIWKNDSFN 579 (712)
T ss_pred cCceEEEEeCCCCc
Confidence 99999999986543
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.5e-31 Score=229.99 Aligned_cols=287 Identities=21% Similarity=0.355 Sum_probs=232.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC---EEEEEeCCCcEEEEeCCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD---LFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~s~dg~i~iwd~~~~ 261 (490)
.|.+-|.++... ++.|++|++||.+++||. .|+....+.||.++|.+++|.-... .|++++.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 467788888877 789999999999999998 5899999999999999999865333 5999999999999998775
Q ss_pred Cc-cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe--EEEE------------------eecCCCCCC
Q 011256 262 GN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQ------------------VSDAGTDGR 320 (490)
Q Consensus 262 ~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~------------------~~~~~~~~~ 320 (490)
.. ..+.....||...|.++...++|..+++|+.|.+|.+|+..+.. .... .......+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 43 23344455999999999999999999999999999999932210 0000 000113578
Q ss_pred CCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-ee
Q 011256 321 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FR 398 (490)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~ 398 (490)
..+|.++.|++ ...+++++-|.+|+.||+.++..+.++.+ ...++|+.++|...+|++|+.|. |++||.|++.. +.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 89999999998 67889999999999999999999988874 46899999999999999999998 99999998643 33
Q ss_pred eeecCCCCCCeeEEEEcCCCCE-EEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 399 SFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~-l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
......|...|.++.|+|...+ |++++.| +++||++. .+..+..+..| ...|.++.|. ++.++++||.|.+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS---~k~plydI~~h--~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS---TKAPLYDIAGH--NDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc---CCCcceeeccC--CceEEEEecc-CCceEEeccCcce
Confidence 3334445789999999998765 6667777 99999943 34466666665 8899999997 5678999999999
Q ss_pred EEEecCC
Q 011256 476 LRVFGLP 482 (490)
Q Consensus 476 v~iw~~~ 482 (490)
|+|+.-.
T Consensus 412 l~i~~~~ 418 (423)
T KOG0313|consen 412 LRIFKGS 418 (423)
T ss_pred EEEeccc
Confidence 9999754
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.2e-30 Score=214.64 Aligned_cols=246 Identities=23% Similarity=0.389 Sum_probs=208.0
Q ss_pred EEEEeccCccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEECCCeE
Q 011256 221 IVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 221 ~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i 298 (490)
.++.+.+|.+.|..++|+|- |..|++|+.|+.|+||+......+.+...+. +|...|.+++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46778899999999999997 8899999999999999998655567776664 799999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCCeEEEEEcCCC
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~~ 375 (490)
.||.-..+.....-. ..+|...|.|++|+++|++||+++.|..|-||.+..+ .++..+++|..-|..+.|+|..
T Consensus 86 ~Iw~k~~~efecv~~---lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 86 VIWKKEDGEFECVAT---LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred EEeecCCCceeEEee---eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999877654333222 4478899999999999999999999999999998754 5777889999999999999999
Q ss_pred CEEEEEeCCC-EEEEECCC---CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCC
Q 011256 376 YYLATAAHDG-VKLWDLRK---LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL 449 (490)
Q Consensus 376 ~~l~~~~~d~-i~iwd~~~---~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~ 449 (490)
.+|++++.|. |++|+-.. ..+..++..+ ...+.+++|++.|..|++++.| ++||.+. ..+. +
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~--~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~---------~~~~-~ 230 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH--ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY---------TDLS-G 230 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCc--cceEEEEEecCCCceEEEecCCcceEeeeec---------cCcc-h
Confidence 9999999997 99998762 3456666665 6699999999999999999999 9999852 1121 2
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 450 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.|...+..+.|. ...|++++.|+.|++|.-..
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 246788999998 45799999999999998763
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-31 Score=252.81 Aligned_cols=247 Identities=23% Similarity=0.391 Sum_probs=220.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
-+..|.++|..++|+|++.++++||+|-.|+||+..+.+++.++.||-+.|..+.|++.-.+++++|.|.+|+||+..+.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE------------------------eecCCC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ------------------------VSDAGT 317 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------~~~~~~ 317 (490)
+++..+.||...|.|..|||....++++|-|.+|++||+..-+.... +.....
T Consensus 126 ---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 126 ---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred ---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 89999999999999999999999999999999999999853211100 001124
Q ss_pred CCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC
Q 011256 318 DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 318 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~ 394 (490)
.||..+|+-++|+|.-.+|++|+.|..|++|.+...+ .+.+..+|.+.|.++-|+|...++++.++|+ |+|||+.+.
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 6889999999999999999999999999999987654 3556789999999999999999999999998 999999999
Q ss_pred cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 395 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
+.+.+|... ....+.++.+|..+++++|... +.||.+
T Consensus 283 t~v~tfrre--ndRFW~laahP~lNLfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 283 TSVQTFRRE--NDRFWILAAHPELNLFAAGHDSGMIVFKL 320 (1202)
T ss_pred cceeeeecc--CCeEEEEEecCCcceeeeecCCceEEEEE
Confidence 999999765 5678899999999999999887 778876
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=8e-31 Score=259.36 Aligned_cols=292 Identities=20% Similarity=0.322 Sum_probs=239.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeCCC------------CcEEEEeccCccCEEEEEEeeCCCEEEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGG--VDTNAVLFDRPS------------GQIVTTLSGHSKKVTSVKFVTEGDLFLT 246 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s 246 (490)
++..++...|.+++.+|+|..++||| .||.+.||+... .+.+.+...|.+.|+|+.|+|||.+||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34455667799999999999999999 899999998532 2345677789999999999999999999
Q ss_pred EeCCCcEEEEeCCC---------------CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE
Q 011256 247 GSADKTVRVWQGSE---------------DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311 (490)
Q Consensus 247 ~s~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 311 (490)
||.|+.|.||.... -..++++..+.+|...|..++|+|++.++++++.|++|.+|+..+.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 99999999999772 023668888999999999999999999999999999999999999977777
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCC------CCCeEEEEEcCCCCEEEEEeCC-
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENGYYLATAAHD- 384 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~d- 384 (490)
+. +|...|..+.|.|-|++|++-+.|++|+||++.+-...+.+.++ ...+..+.|||||.+|++...-
T Consensus 167 l~-----~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 167 LR-----GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred ee-----cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 65 56689999999999999999999999999998776666665432 2367899999999999986432
Q ss_pred -C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCC-------------CC----EEEEEecC--eEEEEEeecCCcce
Q 011256 385 -G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-------------GS----YLAVASAD--IRVYQVASVKADWN 441 (490)
Q Consensus 385 -~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~-------------~~----~l~~~~~d--i~v~~~~~~~~~~~ 441 (490)
+ +.|.+-.+.+.-..+-+| ..++.++.|+|. .. .+|+|+.| +.||.. ...+
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T----~~~R 315 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT----ALPR 315 (942)
T ss_pred CCcceeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec----CCCC
Confidence 2 888887666666666665 679999999872 11 67888888 999997 2233
Q ss_pred EeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 442 CIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 442 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
++...... ....|..++|+|||..|++++.||+|.++.++..
T Consensus 316 Pl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 33322222 2568999999999999999999999999999764
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-31 Score=219.91 Aligned_cols=277 Identities=20% Similarity=0.319 Sum_probs=221.5
Q ss_pred EEEEecCC-CCEEEEE-------eCCCcEEEEeCCCCcEEEEec--cCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCC
Q 011256 191 VSLDIHYS-KDVIATG-------GVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 191 ~~~~~~~~-~~~l~~~-------~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~ 259 (490)
.++.|||- .++|+++ ...|.+.|.++..++-+..+. .-...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889983 3344333 246889999986554444433 245679999999854 589999999999999965
Q ss_pred CCCccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILG 337 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 337 (490)
... .++..++.|..+|.++.|++. +..+++++.|++|++|+...++.+.++. +|..-|....|+| .+++++
T Consensus 92 ~~s--~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-----gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 92 MPS--KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-----GHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred CCC--cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-----CCccEEEEEecCCCCCCeEE
Confidence 443 688899999999999999985 4578888999999999999999888875 5668899999999 679999
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCeeEEEE
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDF 414 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~ 414 (490)
+++.||++++||++..-....+..|...|.|+.|+. +.+.|++|+.|+ |++||+|+.+. +..+ ..|...|..+.|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKF 242 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--cCCceEEEEEec
Confidence 999999999999987544445888999999999998 567889999998 99999998763 3444 444788999999
Q ss_pred cCC-CCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-CCCeEEEEeCCCcEEEecC
Q 011256 415 DHS-GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 415 s~~-~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~ 481 (490)
||. ..+|++++.| ++||+... .-..+.+... |...|..+.|++ ++.++|+++.|+.++||+-
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~---~ds~~e~~~~--HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPER---QDSAIETVDH--HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEeccccc---chhhhhhhhc--cceEEeccccccccCceeeecccccceeeecc
Confidence 997 4678999999 99999832 2233334443 477889999998 6778999999999999983
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=4.5e-30 Score=243.69 Aligned_cols=287 Identities=21% Similarity=0.370 Sum_probs=242.5
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC-
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE- 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~- 260 (490)
...+|+..|+++.|+..|..|++|+.|+.|.+||+-...-...+.||...|+..-|..+.+++++.|.|+.|++||+.+
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq 181 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ 181 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccc
Confidence 4567999999999999999999999999999999988888889999999999998888788999999999999998000
Q ss_pred --------------------------------------------------------------------------------
Q 011256 261 -------------------------------------------------------------------------------- 260 (490)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (490)
T Consensus 182 hCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c 261 (888)
T KOG0306|consen 182 HCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVC 261 (888)
T ss_pred eeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEE
Confidence
Q ss_pred ----------------------------------------------------------------------C-Cc------
Q 011256 261 ----------------------------------------------------------------------D-GN------ 263 (490)
Q Consensus 261 ----------------------------------------------------------------------~-~~------ 263 (490)
+ ..
T Consensus 262 ~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l 341 (888)
T KOG0306|consen 262 QGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL 341 (888)
T ss_pred ecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe
Confidence 0 00
Q ss_pred -----------------cc----eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 011256 264 -----------------YD----CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 322 (490)
Q Consensus 264 -----------------~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 322 (490)
.. ....+.+|...|.+++++.+...+++| ..+.+++|+..+.+++.++.. .
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~-------~ 413 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITC-------G 413 (888)
T ss_pred ecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEecc-------c
Confidence 00 012345788899999999776666665 457899999999999999864 4
Q ss_pred CceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc-----c
Q 011256 323 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-----N 396 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-----~ 396 (490)
.+.+..|-|.++++++|...|.+.+||+.+...+.++..|.+.|.+++.+||+..+++|+.|. |++||+.-.. .
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc
Confidence 678999999999999999999999999999999999999999999999999999999999998 9999974211 1
Q ss_pred --------eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe
Q 011256 397 --------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 397 --------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 466 (490)
.+++.. ...|.|+.+||||++|+++--| ++||.+ .+......+.+| .-+|.|+.+|||++.
T Consensus 494 ~k~lsl~~~rtLel---~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl----DtlKFflsLYGH--kLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 494 KKVLSLKHTRTLEL---EDDVLCVSVSPDGKLLAVSLLDNTVKVYFL----DTLKFFLSLYGH--KLPVLSMDISPDSKL 564 (888)
T ss_pred ceeeeeccceEEec---cccEEEEEEcCCCcEEEEEeccCeEEEEEe----cceeeeeeeccc--ccceeEEeccCCcCe
Confidence 122222 5679999999999999999888 999998 456666677776 889999999999999
Q ss_pred EEEEeCCCcEEEecCCCCC
Q 011256 467 IAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 467 l~s~~~dg~v~iw~~~~~~ 485 (490)
++|||.|..|+||.++-++
T Consensus 565 ivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred EEeccCCCceEEeccccch
Confidence 9999999999999998765
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=5e-30 Score=250.78 Aligned_cols=276 Identities=26% Similarity=0.501 Sum_probs=242.5
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE-eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
.+...+.+..|+ .+++++++.+++|.+||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.++++||..++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-- 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-- 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--
Confidence 456788899998 77899999999999999999998888 9999999999999776889999999999999999887
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
.|...+.+|...|.++... ..++++|+.|.+|++|++.++.++..+.. |...|.++.++ +.++++|+.||
T Consensus 282 -~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-----h~~~V~~v~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 282 -ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-----HTGPVNCVQLD--EPLLVSGSYDG 351 (537)
T ss_pred -cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-----ccccEEEEEec--CCEEEEEecCc
Confidence 8999999999999999875 66788899999999999999999988862 66899999998 78999999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC-cceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
+|++||+.+++++..+.+|.+.|.++.+... ..+++|+.|+ |++||+++. +++..+..+ ...+..+. ..+++|
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~--~~~~~L 426 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLL--LRDNFL 426 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC--cccccccc--ccccee
Confidence 9999999999999999999999999988655 8999999998 999999999 888888776 44554444 467899
Q ss_pred EEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 422 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
++++.| |++|+. ....++..+... +.+.|..+++. ...+++++.||.+++||++++..
T Consensus 427 vs~~aD~~Ik~WD~----~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 427 VSSSADGTIKLWDA----EEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EeccccccEEEeec----ccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 999988 999998 667788887764 36788888876 45788889999999999988754
No 68
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=3.4e-29 Score=244.77 Aligned_cols=267 Identities=19% Similarity=0.236 Sum_probs=201.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-------------EEeccCccCEEEEEEee-CCCEEEEEeCCCc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-------------TTLSGHSKKVTSVKFVT-EGDLFLTGSADKT 252 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~ 252 (490)
-..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.||+
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345555666666666666666666666664333221 24678999999999999 8889999999999
Q ss_pred EEEEeCCCCCc----cceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEE
Q 011256 253 VRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 327 (490)
Q Consensus 253 i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (490)
|++||+...+. ...+..+.+|...|.+++|+|++ ++|++++.|++|++||++++..+..+. +|...|.++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-----~h~~~V~sl 174 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-----CHSDQITSL 174 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-----CCCCceEEE
Confidence 99999976421 13566788999999999999986 699999999999999999998776664 455789999
Q ss_pred EEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCC-eEEEEEcCCCCEEEEEe----CCC-EEEEECCCCcceeeee
Q 011256 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA-VTAISFSENGYYLATAA----HDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 328 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~l~~~~----~d~-i~iwd~~~~~~~~~~~ 401 (490)
+|+|+|.+|++|+.||.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .++ |++||+++........
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 99999999999999999999999999999999888764 45678998877777654 245 9999999865433322
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 463 (490)
.......+....|++++.+|++++. | |++|++... ......... ....+.+++|.|.
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~----~~~~~~~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE----RLTFCSSYS-SVEPHKGLCMMPK 314 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC----ceEEEeecc-CCCCCcceEeccc
Confidence 2222345666789999999998874 5 999999542 233322221 2445677888774
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.7e-29 Score=234.83 Aligned_cols=247 Identities=34% Similarity=0.621 Sum_probs=214.0
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
.++.+|..+|.+++|+|++++|++++.||.|++|++.+. .....+..|...+..+.|+|+++++++++.||.|.+||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC---CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 456789999999999999999999999999999999875 45667778999999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 011256 303 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
+.++.....+. .|...+.++.|++++.++++++.+|.|.+||+++++....+..|...|.++.|+|++.++++++
T Consensus 80 ~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 80 LETGECVRTLT-----GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred cCcccceEEEe-----ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 99877666654 3346899999999999999998899999999998988888888999999999999999999988
Q ss_pred CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEE
Q 011256 383 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 459 (490)
Q Consensus 383 ~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 459 (490)
.++ |++||++..+....+..+ ...+.++.|+|+++.+++++.+ +++|++ ........+..+ ...+.++.
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~----~~~~~~~~~~~~--~~~i~~~~ 226 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDL----STGKCLGTLRGH--ENGVNSVA 226 (289)
T ss_pred CCCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEEC----CCCceecchhhc--CCceEEEE
Confidence 676 999999988887777754 5689999999999888888877 999998 334555555443 66899999
Q ss_pred EcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 460 FGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 460 ~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|+|++.++++++.||.|++|++..+.
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 99998889888889999999997543
No 70
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=226.79 Aligned_cols=283 Identities=17% Similarity=0.298 Sum_probs=237.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----E-------------e-ccCccCEEEEEEeeCCC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----T-------------L-SGHSKKVTSVKFVTEGD 242 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~-------------~-~~h~~~v~~l~~~~~~~ 242 (490)
..+..|.-+|+|++++|++.++++++.+|+|.-|+..+++... + - .+|...|.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4567788899999999999999999999999999988776331 1 0 27888899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 322 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 322 (490)
||++|+.|..|.||+..+. ..+..+.+|.+.|.+++|-.....+++++.|+.+++|++.....+.++. +|..
T Consensus 216 ylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-----GHqd 287 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-----GHQD 287 (479)
T ss_pred EEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-----CCcc
Confidence 9999999999999999987 6777899999999999999888899999999999999998877666554 6778
Q ss_pred CceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 323 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
.|..+....-++.+.+|+.|+++++|++.. .....+.++.+.+-|++|- |...|++|+++| |.+|++.+.+++.+..
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEee
Confidence 999999998899999999999999999944 3444677888899999998 457899999999 9999999988876665
Q ss_pred cCCC----------CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEE
Q 011256 402 SSDS----------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV 469 (490)
Q Consensus 402 ~~~~----------~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 469 (490)
..+. ...|++++..|...++++|+.+ +++|.+..+....+.+..+.. .+.|++++|+++|+.|++
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCCCEEEE
Confidence 4321 2378999999999999999988 999999665555556655553 789999999999997666
Q ss_pred E-eCCCcE
Q 011256 470 G-SMDRNL 476 (490)
Q Consensus 470 ~-~~dg~v 476 (490)
| +....+
T Consensus 443 giGkEhRl 450 (479)
T KOG0299|consen 443 GIGKEHRL 450 (479)
T ss_pred eccccccc
Confidence 5 444333
No 71
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=5.2e-29 Score=244.43 Aligned_cols=249 Identities=20% Similarity=0.331 Sum_probs=195.3
Q ss_pred EeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCc-----cceeeeecccccceE
Q 011256 205 GGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGN-----YDCKHTLKDHTAEVQ 278 (490)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~ 278 (490)
|+.++.|.+|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.+... ..+...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998888888899999999999999996 78999999999999999976421 123456788999999
Q ss_pred EEEEecCCCE-EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceee
Q 011256 279 AVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 357 (490)
Q Consensus 279 ~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 357 (490)
+++|+|++.. +++++.|++|++||++++.....+.. ...|.+++|+|+|.+|++++.|+.|+|||+++++.+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999999875 57899999999999999987666532 2679999999999999999999999999999999999
Q ss_pred eecCCCCCeEE-----EEEcCCCCEEEEEeCC----C-EEEEECCC-CcceeeeecCCCCCCeeEEEEcCCCCEEEEEec
Q 011256 358 KFDGHVGAVTA-----ISFSENGYYLATAAHD----G-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 358 ~~~~~~~~i~~-----l~~s~~~~~l~~~~~d----~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
.+.+|.+.+.+ ..|++++.+|++++.+ . |+|||+++ ..++..+........+......++|.++++|+.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 99999876543 2355888888887765 2 99999996 455555544333333334444556888989988
Q ss_pred C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 427 D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 427 d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
| +++|++... .+..+....+..++.+++|.|..
T Consensus 284 D~tIr~~e~~~~-----~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLG-----SIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCC-----cEEeecccccCCCccceEEcccc
Confidence 8 999998432 22223333346778899999964
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.6e-31 Score=232.17 Aligned_cols=238 Identities=23% Similarity=0.419 Sum_probs=204.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|.+.|.|+.|. .+.+++|++|.+|+|||.++++++.++-+|...|..+.|+ ..++++++.|.++.+||+...
T Consensus 232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc
Confidence 567899999999987 5699999999999999999999999999999999999994 668999999999999999887
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
....+.+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+++++..+. +|..+|-|+.+ .|+++++|+.
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-----gHkRGIAClQY--r~rlvVSGSS 378 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACLQY--RDRLVVSGSS 378 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-----cccccceehhc--cCeEEEecCC
Confidence 6667778889999999999996 6799999999999999999999988875 55678877776 5889999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCccee-------eeecCCCCCCeeEEE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR-------SFESSDSETPTNSVD 413 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~-------~~~~~~~~~~i~~i~ 413 (490)
|.+|++||+..|.+++.+++|..-|.|+.| |.+.+++|..|| |+|||+......+ ......+.+.|..+.
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 999999999999999999999999999999 678999999998 9999998754321 111223467888999
Q ss_pred EcCCCCEEEEEecC--eEEEEEeec
Q 011256 414 FDHSGSYLAVASAD--IRVYQVASV 436 (490)
Q Consensus 414 ~s~~~~~l~~~~~d--i~v~~~~~~ 436 (490)
|+ ...+++++.+ |-||++...
T Consensus 457 FD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 457 FD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ec--ceEEEeccCCCeEEEEEcCCC
Confidence 85 3445555444 999998543
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=9e-29 Score=260.90 Aligned_cols=265 Identities=17% Similarity=0.278 Sum_probs=213.7
Q ss_pred CCcEEEEeCCCCcEEEE-----eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC----c-cceeeeecccccce
Q 011256 208 DTNAVLFDRPSGQIVTT-----LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG----N-YDCKHTLKDHTAEV 277 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~-~~~~~~~~~h~~~v 277 (490)
+|.+++|+......... +..|.+.|.+++|+|+|++|++|+.|+.|+||+..... . ......+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788888776554433 34589999999999999999999999999999975421 0 01122233 34679
Q ss_pred EEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCce
Q 011256 278 QAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN 355 (490)
Q Consensus 278 ~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~ 355 (490)
.+++|++. +.+|++++.||+|++||+.++..+..+. +|...|.+++|+| ++.+|++|+.||.|++||++++..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-----~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-----EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-----CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 99999874 6899999999999999999988777664 4668899999997 789999999999999999999988
Q ss_pred eeeecCCCCCeEEEEEc-CCCCEEEEEeCCC-EEEEECCCCc-ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEE
Q 011256 356 VAKFDGHVGAVTAISFS-ENGYYLATAAHDG-VKLWDLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 430 (490)
Q Consensus 356 ~~~~~~~~~~i~~l~~s-~~~~~l~~~~~d~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v 430 (490)
+..+..+ ..|.++.|+ ++|.+|++|+.|+ |++||+++.. ....+.. +...|.++.|. ++.+|++++.| +++
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC--CCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 8888754 689999995 5699999999998 9999998765 3444444 36789999997 67889999888 999
Q ss_pred EEEeecC--CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 431 YQVASVK--ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 431 ~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
|++.... ..+..+..+.+| ...+.+++|++++.+|++|+.||.|++|+....
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9985421 123456677765 678899999999999999999999999997543
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.9e-30 Score=226.33 Aligned_cols=255 Identities=20% Similarity=0.349 Sum_probs=219.7
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
+..+.+..|+..|.-+.|+++|++||+++.|.+..||.+......+..+++.+|..+|..+.|+||.+++++|+.|..+.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 34566788999999999999999999999999999999988777788999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC-CCeEEEEEcCCCCEE
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-GAVTAISFSENGYYL 378 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l 378 (490)
+||..+|.....+... +...+.+++|.|||..+++|+.|+.+..||+.. .....+++-. ..|.+++..+||+++
T Consensus 295 lwDv~tgd~~~~y~~~----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSG----LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred eccCCcchhhhhcccC----cCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEE
Confidence 9999999988877532 447899999999999999999999999999864 4455555432 469999999999999
Q ss_pred EEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcce
Q 011256 379 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 455 (490)
Q Consensus 379 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 455 (490)
++.+.|. |++|+.........+.. ..+|+++++|.+++++++.-.+ +++|++ ..+..+..+.+|.....+
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL~~qei~LWDl----~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNLQDQEIHLWDL----EENKLVRKYFGHKQGHFI 442 (519)
T ss_pred EEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEcccCeeEEeec----chhhHHHHhhcccccceE
Confidence 9999887 99999887666555544 5789999999999999988776 999999 567778888888666677
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEecCCCCCC
Q 011256 456 TCVKFGP-DAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 456 ~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
..-||.- +..++++|+.|+.|+||+..++..
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 7778865 558999999999999999887754
No 75
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6e-28 Score=198.17 Aligned_cols=285 Identities=20% Similarity=0.309 Sum_probs=224.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------C---------cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------G---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~---------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 252 (490)
..|.+++|+|.|.+.++|+..++++|..... + -..+.-+.|.+.|.|.+|+|+|.++++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 4799999999999999999999998874321 1 112234578999999999999999999999999
Q ss_pred EEEEeCCCCCc--cceeeeecccccceEEEEEecC----CCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 253 VRVWQGSEDGN--YDCKHTLKDHTAEVQAVTVHAT----NKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 253 i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
|++..++.... .-.-..+.-|.+.|..++|..+ +..|++++ .|..|++-|...|+....+. +|.+.|.
T Consensus 113 ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-----ghtghil 187 (350)
T KOG0641|consen 113 IKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-----GHTGHIL 187 (350)
T ss_pred EEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-----CCcccEE
Confidence 99987665321 1223456679999999999643 34666665 46778888988888777665 4556665
Q ss_pred EEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC--C-----CCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcce
Q 011256 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--H-----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF 397 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~ 397 (490)
++ ++-+|-+|++|+.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|-.|. ..+||++.++.+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 54 334688999999999999999999988887742 2 35799999999999999999997 999999999999
Q ss_pred eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 398 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
+.+..+ ...|.++.|+|...|+++++.| |++-++.-.-...-.+.... .|...+..+.|+|..-.+++.+.|.+
T Consensus 267 q~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 267 QRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred eeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCccceeeeccCcce
Confidence 998776 7899999999999999999999 77777632111111122222 34778889999999989999999999
Q ss_pred EEEecCC
Q 011256 476 LRVFGLP 482 (490)
Q Consensus 476 v~iw~~~ 482 (490)
+.+|.++
T Consensus 343 ~tlwa~~ 349 (350)
T KOG0641|consen 343 ATLWALN 349 (350)
T ss_pred EEEeccC
Confidence 9999875
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-30 Score=239.80 Aligned_cols=292 Identities=19% Similarity=0.365 Sum_probs=238.1
Q ss_pred CCCCeE---EEEecC-CCCEEEEEeCCCcEEEEeCCCCc------EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 186 SKPGIV---SLDIHY-SKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 186 h~~~I~---~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
|...|. .+..+. .+++|++||.||.|++|+..... .+..++.|...|+.+....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 334454 444444 56689999999999999875422 36788899999999999999999999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEE-ecCCCEEEEEECCCeEEEEeCCCCeE--EEEee---cCCCC-CCCCCceEEE
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTV-HATNKYFVTASLDNTWCFYDLSSGIC--LTQVS---DAGTD-GRPEGYTSAA 328 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~-~~~~~v~~~~ 328 (490)
|+...+. .-|..++..|.+.|.|+++ .++...+++||-|+.|.+||++++.. +..+. ..... ++...|++++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9998754 4688889999999999999 77888999999999999999998833 22222 11122 6778999999
Q ss_pred EcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCC
Q 011256 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
.++.|..|++|+..+.+++||.++++.+..+.+|...|.++..++||..+++++.|+ |++||+...+++.++..| ..
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e 256 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KE 256 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cC
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999998887 55
Q ss_pred CeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 408 PTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.+.++..+|+-..+++|+.+..|+..+.... ......+.. ..+|..+..+...+-+.+++.|+.|+-|.....
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~~~tlick~---daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP-AKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc-hhheEeecC---CCchhhhhhccccCCceeeeccccceecCCccc
Confidence 6999999999999999999966665533221 222222222 456777777655555677888999999987643
No 77
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.4e-28 Score=237.78 Aligned_cols=229 Identities=17% Similarity=0.255 Sum_probs=185.3
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEeccCccCEEEEEEeeCC-CEEEEEeCCC
Q 011256 181 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADK 251 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg 251 (490)
++..+|.+.|++++|+| ++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34568999999999999 7889999999999999998765 3467889999999999999975 6999999999
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
+|+|||+.++ .....+.+|...|.+++|+|++.+|++++.|+.|++||++++..+..+..+.. ..+..+.|.+
T Consensus 149 tVrIWDl~tg---~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~----~~~~~~~w~~ 221 (493)
T PTZ00421 149 VVNVWDVERG---KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS----AKSQRCLWAK 221 (493)
T ss_pred EEEEEECCCC---eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC----CcceEEEEcC
Confidence 9999999876 66778889999999999999999999999999999999999988777653211 2345677888
Q ss_pred CCcEEEEEc----CCCcEEEEECCCCc-eeeeecCC-CCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcceeeeecC
Q 011256 332 DGLILGTGT----SEALVKIWDVKSQA-NVAKFDGH-VGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 332 ~~~~l~~g~----~dg~i~iwd~~~~~-~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~ 403 (490)
++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++. |+ |++||++++..+......
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence 877776643 47899999998754 34333322 345666789999999988874 67 999999998876655432
Q ss_pred CCCCCeeEEEEcCC
Q 011256 404 DSETPTNSVDFDHS 417 (490)
Q Consensus 404 ~~~~~i~~i~~s~~ 417 (490)
...++..++|.|.
T Consensus 302 -s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 -SVEPHKGLCMMPK 314 (493)
T ss_pred -CCCCCcceEeccc
Confidence 2456788888875
No 78
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=211.83 Aligned_cols=286 Identities=21% Similarity=0.329 Sum_probs=214.4
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-----EE-EeccCccCEEEEEEeeCCCE-EEEEeCCCcE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VT-TLSGHSKKVTSVKFVTEGDL-FLTGSADKTV 253 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~-~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i 253 (490)
...++|.+.|++++|+.||+.|++++.|++|++|++.+... ++ .+. -+.-+.+.|.||.+- ++++-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence 35688999999999999999999999999999999876321 11 111 124578999999875 4444556689
Q ss_pred EEEeCCCCC--ccc-------eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCc
Q 011256 254 RVWQGSEDG--NYD-------CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 254 ~iwd~~~~~--~~~-------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 324 (490)
++|.+.... .+. ....-..|...|..+-...++.+|++++.|..|.+|+++ |+.+..+.... ..-
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-----~~n 231 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-----SSN 231 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-----ccc
Confidence 999764321 111 011122456677777777788999999999999999999 88777776443 345
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECC---CC-----ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC--
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVK---SQ-----ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK-- 393 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~-- 393 (490)
+..+++|+|+++++++..-.|++|.+- .| ..+..+++|...|..++|+++...+++.+.|| ++|||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 678899999999999999999999863 22 34567899999999999999999999999999 99999752
Q ss_pred -----Ccceeeee--cCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC
Q 011256 394 -----LKNFRSFE--SSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 465 (490)
Q Consensus 394 -----~~~~~~~~--~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 465 (490)
.+.++... .+...+....+.++|+|+.|+++... +++|.... .+....+... |...|.+++|+++|+
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~----g~~~~~~e~~-h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED----GKDYPELEDI-HSTTISSISYSSDGK 386 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc----CccchhHHHh-hcCceeeEEecCCCc
Confidence 22233332 12224445689999999999988776 99998733 3333333332 578999999999999
Q ss_pred eEEEEeCCCcEEEec
Q 011256 466 YIAVGSMDRNLRVFG 480 (490)
Q Consensus 466 ~l~s~~~dg~v~iw~ 480 (490)
+++++| |..++++.
T Consensus 387 ~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 387 YIATCG-DRYVRVIR 400 (420)
T ss_pred EEeeec-ceeeeeec
Confidence 999998 78888886
No 79
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1e-28 Score=216.21 Aligned_cols=245 Identities=18% Similarity=0.268 Sum_probs=207.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|+..|+|+.|+.+|.+||||+.+|.|+||...++.....+..--..|.=+.|+|.+..|+.|+.||.+-+|.+..+
T Consensus 101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 45679999999999999999999999999999999999988888766677888999999999999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC------------------------
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT------------------------ 317 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------ 317 (490)
...+.+.+|..++++=.|.|+|+.++++..||+|++||+.++..+..+.....
T Consensus 181 ---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 181 ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 56778899999999999999999999999999999999999988777651100
Q ss_pred ----------------------CCCCCCceEEEEcC---CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEc
Q 011256 318 ----------------------DGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 318 ----------------------~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 372 (490)
..+...+.|+.+.| .=.+.|+|+.||+|.|||+...+....+. |..+|+.+.|.
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~ 336 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL 336 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence 00111222333333 34678899999999999998877666555 88899999999
Q ss_pred CCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 373 ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 373 ~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+ ..+|++++.+| |+.||.|+++....+..| ...|.+++++|+++++++++.| .+||..
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 8 67888888888 999999999999888877 7899999999999999999999 777765
No 80
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-28 Score=210.30 Aligned_cols=263 Identities=16% Similarity=0.268 Sum_probs=214.2
Q ss_pred EEEEeCCCcEEEEeCCCC------------cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeee
Q 011256 202 IATGGVDTNAVLFDRPSG------------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 202 l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 269 (490)
|++|++...|.-+++... ..+..+..|.++|++++. ++.++++||.|-+|+|||+... .....
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---KQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch---hhhcc
Confidence 556666666655554321 225567789999999998 7999999999999999999886 56677
Q ss_pred ecccccceEEEEEecCCC--EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEE
Q 011256 270 LKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 347 (490)
Q Consensus 270 ~~~h~~~v~~l~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 347 (490)
+..|.+.|+++.|.+.-. .|++|+.||.|.+|+...-.++..+. +|...|+.+++||.|++-++.+.|+.++.
T Consensus 79 ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-----~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 79 LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-----AHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-----ccccccceeEecCCCceEEEEcCCceeee
Confidence 778999999999998764 89999999999999999988888776 44577999999999999999999999999
Q ss_pred EECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 348 WDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 348 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
||+-+|+.-..+.- ...-+.+.|+|.|.+++.++.++|-+|.+.+......+... ..+.++.|. ++.+|++|+.+
T Consensus 154 WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCC
Confidence 99998876655542 22345599999999999999999999999988777666553 456777775 57788888888
Q ss_pred --eEEEEEeecCCcceEeeeecCCCCCcceEEEEE--cCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 428 --IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF--GPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 428 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+.+||-+ ...+...+..| ..+|-++.+ .|++.||++++.||.|+|||++...
T Consensus 229 ~~i~~~D~d----s~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 229 EWISLKDTD----SDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ceEEEeccC----CCccceeeecc--hhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 9999973 35566667775 888998874 5688999999999999999998763
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.8e-30 Score=220.58 Aligned_cols=251 Identities=20% Similarity=0.378 Sum_probs=214.4
Q ss_pred cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc-----cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEE
Q 011256 227 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-----YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 301 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 301 (490)
+....+-|..|+|||++|++|+.||.|.+||..++.. ++....+.-+..+|.|+.|+.+...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 3455688999999999999999999999999887632 22233445588899999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
.+++|.|+..+.. .|..+|+|+.|+.|+..+++++.|.++++.-+++|+++..+.+|.+.|+...|.++|.+++++
T Consensus 291 ri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 291 RIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEecchHHHHhhh----hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999998853 466899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCcceEeeeecCC-CCCcceE
Q 011256 382 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDL-SGTGKAT 456 (490)
Q Consensus 382 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~-~~~~~v~ 456 (490)
+.|| |++|+..+.++..+|.......+|+++..-|.. ..++++... +.|.++ .+..++.+... ...+...
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-----qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-----QGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-----cceEEeeeccCCccCCceE
Confidence 9998 999999999999999988888899999888764 445555444 666654 45666666432 2356677
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 457 CVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 457 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
+.+.+|.|.++.+.+.|+.++.|.+.++..
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 888999999999999999999999887653
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=206.54 Aligned_cols=247 Identities=25% Similarity=0.405 Sum_probs=210.5
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEE
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFY 301 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iw 301 (490)
..+.+|...|.+++|+.+|..|++|+.|+++.+|+++.. .........+|.+.|-.++|+|. .+.|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999875 23334455789999999999885 4799999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
|++.+++...+... ..-.-+.|+|+|.++++|+.|..|.+.|.++.+.+...+ ....++.++|+.++.+++..
T Consensus 93 d~r~~k~~~~i~~~------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 93 DIRSGKCTARIETK------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EeccCcEEEEeecc------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence 99999999888754 334568999999999999999999999999988776665 44577888898766666666
Q ss_pred eCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEE
Q 011256 382 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCV 458 (490)
Q Consensus 382 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 458 (490)
...| |.|......+++..+..| .....||.|+|+|+|+++|+.| +.+||+ ....+++.+..+ .-+|..+
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH--~snCicI~f~p~GryfA~GsADAlvSLWD~----~ELiC~R~isRl--dwpVRTl 237 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAH--PSNCICIEFDPDGRYFATGSADALVSLWDV----DELICERCISRL--DWPVRTL 237 (313)
T ss_pred cCCceEEEEeccccccccccccC--CcceEEEEECCCCceEeeccccceeeccCh----hHhhhheeeccc--cCceEEE
Confidence 5555 999999999999999887 5788899999999999999999 999998 566777777765 6789999
Q ss_pred EEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 459 KFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 459 ~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.||.||++||+|+.|..|-|=++++++
T Consensus 238 SFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 238 SFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred EeccCcceeeccCccceEEeEecccCC
Confidence 999999999999999999877776664
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.6e-28 Score=207.15 Aligned_cols=272 Identities=18% Similarity=0.254 Sum_probs=213.0
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCC-CcEE-EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 181 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
.+.....+.|.+++||| ...++++|+.||+|++|++.. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 34455577899999999 556777999999999999876 3332 34557999999999999999999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCC--EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
+.++ ....+..|.++|.++.|-+... .|++||.|.+|++||.+....+.++... ..++++..- ..+
T Consensus 101 L~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP------eRvYa~Dv~--~pm 168 (347)
T KOG0647|consen 101 LASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP------ERVYAADVL--YPM 168 (347)
T ss_pred ccCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc------ceeeehhcc--Cce
Confidence 9985 4556678999999999987765 8999999999999999999998888754 556666553 457
Q ss_pred EEEEcCCCcEEEEECCCCceee-eec-CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC--cceeeeecCCC-----
Q 011256 336 LGTGTSEALVKIWDVKSQANVA-KFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDS----- 405 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~----- 405 (490)
++++..+..|.+|+++++.... .+. ..+-.+.|++..++....+.|+-.| +-|..+..+ +.-..|..|..
T Consensus 169 ~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~ 248 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN 248 (347)
T ss_pred eEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCC
Confidence 8888999999999997763322 221 2344688999988887778898888 777776655 44445555542
Q ss_pred --CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEE
Q 011256 406 --ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG 470 (490)
Q Consensus 406 --~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 470 (490)
-..|++|+|+|....|+++++| ..+||- .....++....+ ..+|+|.+|+.+|.+++.+
T Consensus 249 ~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk----dar~kLk~s~~~--~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 249 DDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK----DARTKLKTSETH--PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CceEEecceEeecccceEEEecCCceEEEecc----hhhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence 2458899999999999999988 788885 333444555554 7899999999999998765
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-28 Score=208.11 Aligned_cols=260 Identities=17% Similarity=0.310 Sum_probs=213.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC--EEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~s~dg~i~iwd~~ 259 (490)
.+..|.++|++++.+ +.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 356789999999987 89999999999999999999999999999999999999988665 89999999999999985
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
. +.++..+++|.+.|+.+++||.+++-++.+.|+.++.||+-.|+.-...... ...+.+.|+|.|.+|+++
T Consensus 116 ~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 S---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred C---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC------CcceeeEEcCCCCEEEEE
Confidence 4 5899999999999999999999999999999999999999998876666533 334559999999999998
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEE--cC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF--DH 416 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~--s~ 416 (490)
..++ |-+|.+.+.+....+.. ...+.|+.|. ++..|++|.++. |.+||.....+...+..| ...|..+.+ .|
T Consensus 187 ~~~~-i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 187 GRNK-IDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNP 261 (362)
T ss_pred eccE-EEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecC
Confidence 8765 89999988776666553 3567788776 567888888887 999999998888888777 678888874 56
Q ss_pred CCCEEEEEecC--eEEEEEeecCCc-ceEeeeecCCCCCcceEEEEE
Q 011256 417 SGSYLAVASAD--IRVYQVASVKAD-WNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 460 (490)
.+.||+++++| |+||+++...+. ...+..+.. ...++|+..
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~---~~RltCl~~ 305 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT---NVRLTCLRV 305 (362)
T ss_pred CceEEEEeccCceEEEEEccccccCCcceeEEeec---CCccceeee
Confidence 78999999999 999998654322 122332222 445666554
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-28 Score=222.25 Aligned_cols=229 Identities=22% Similarity=0.329 Sum_probs=201.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
+..+.+++|..||.++++|+..|.|+|||..+...+..+.+|+.+|..+.|+|.+ ..|++|+.|+.+++||+.+. .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~ 144 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---Y 144 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---E
Confidence 5689999999999999999999999999987777788899999999999999955 57889999999999999886 3
Q ss_pred eeeeecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 266 CKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
....+.+|++.|.|.+|+|.+. .+++||.||+|++||++.. ..+..+. |..+|..+.+-|.|.++++++. .
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln------hg~pVe~vl~lpsgs~iasAgG-n 217 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN------HGCPVESVLALPSGSLIASAGG-N 217 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec------CCCceeeEEEcCCCCEEEEcCC-C
Confidence 4667889999999999999765 7899999999999999987 4555543 4488999999999999999875 5
Q ss_pred cEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 344 LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 344 ~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
.|++||+-+| +.+..+..|...|+|+.+..++..|++++-|+ |++||+.+.+.+..+.. .++|.+++.+|+++.+
T Consensus 218 ~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 218 SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTV 294 (487)
T ss_pred eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceE
Confidence 7999999865 44555555999999999999999999999998 99999999998888887 6899999999999999
Q ss_pred EEEecCe
Q 011256 422 AVASADI 428 (490)
Q Consensus 422 ~~~~~di 428 (490)
+.|..++
T Consensus 295 viGmsnG 301 (487)
T KOG0310|consen 295 VIGMSNG 301 (487)
T ss_pred EEecccc
Confidence 9999983
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9.8e-28 Score=205.95 Aligned_cols=283 Identities=16% Similarity=0.249 Sum_probs=219.9
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
....+..|.++.|+|.++.|+++++||++++||.........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~- 85 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG- 85 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC-
Confidence 33446789999999999999999999999999998876666666 899999999986 456899999999999999985
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
....+..|..+|.||.+.+....+++||.|++|++||.+.......+... ..|.++... |+.|++|+.+
T Consensus 86 ---~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~------kkVy~~~v~--g~~LvVg~~~ 154 (323)
T KOG1036|consen 86 ---NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG------KKVYCMDVS--GNRLVVGTSD 154 (323)
T ss_pred ---cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC------ceEEEEecc--CCEEEEeecC
Confidence 34456679999999999999999999999999999999985555444322 467777664 6789999999
Q ss_pred CcEEEEECCCCceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC----cceeeeecCCC-------CCC
Q 011256 343 ALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDS-------ETP 408 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~----~~~~~~~~~~~-------~~~ 408 (490)
..|.+||+++.....+.. ..+..+.|+++-|++.-+++++-+| |.+=.+... .....|..|.. -.+
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 999999999875544322 2345799999999988888888887 554433332 22233433321 357
Q ss_pred eeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC-----CCc------
Q 011256 409 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-----DRN------ 475 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~------ 475 (490)
|++++|+|-...|++|+.| +.+|+. .+.+.+..+... ...|.+++|+.||..||+++. ...
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~----~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~sy~ye~~~~~~~~~~ 308 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGIVNIWDL----FNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASSYQYERADTPTHERN 308 (323)
T ss_pred eceeEeccccceEEecCCCceEEEccC----cchhhhhhccCC--CCceEEEEeccCCCeEEEEechhhhcCCCCCCCCC
Confidence 9999999999999999999 899998 445555555554 567999999999999999873 122
Q ss_pred -EEEecCCCCC
Q 011256 476 -LRVFGLPGND 485 (490)
Q Consensus 476 -v~iw~~~~~~ 485 (490)
|.|.++...+
T Consensus 309 ~i~I~~l~d~e 319 (323)
T KOG1036|consen 309 AIFIRDLTDYE 319 (323)
T ss_pred ceEEEeccccc
Confidence 6666665544
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.5e-27 Score=201.20 Aligned_cols=251 Identities=20% Similarity=0.362 Sum_probs=205.2
Q ss_pred EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEEC--CCeE
Q 011256 221 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTW 298 (490)
Q Consensus 221 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~i 298 (490)
..+.+....+.|+++.|+++|.+|++++.|.++++||...+ +.+.++..+.-.|..+.|....+.++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 34455556788999999999999999999999999999887 777788777788889999777777777776 8899
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEE
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 378 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 378 (490)
++.++.+.+.++.+. ||...|.+++.+|-+..+++++.|++|++||++..++...+... .-..++|.|.|-++
T Consensus 83 ryLsl~dNkylRYF~-----GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLif 155 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFP-----GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIF 155 (311)
T ss_pred EEEEeecCceEEEcC-----CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEE
Confidence 999999999998876 67799999999999999999999999999999988877666533 33557899999999
Q ss_pred EEEeCCC-EEEEECCCC--cceeeeecC-CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCC
Q 011256 379 ATAAHDG-VKLWDLRKL--KNFRSFESS-DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452 (490)
Q Consensus 379 ~~~~~d~-i~iwd~~~~--~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
|++.... |++||+|.. .+...+... ......+.+.|+|+|++|+.++.. +.+.+. ..+....++..+...
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA----f~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA----FDGTVKSTFSGYPNA 231 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc----cCCcEeeeEeeccCC
Confidence 9999886 999999975 344555543 235678999999999999999888 555554 344466666655433
Q ss_pred cc-eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 453 GK-ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 453 ~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+. ....+|+||++++++|+.||+|.+|++.++.
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 32 2567899999999999999999999997764
No 88
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.4e-28 Score=213.29 Aligned_cols=247 Identities=23% Similarity=0.404 Sum_probs=208.0
Q ss_pred cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC---EEEEEECCCeEEEEeC
Q 011256 227 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK---YFVTASLDNTWCFYDL 303 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~l~s~~~dg~i~iwd~ 303 (490)
.|...|.++... ++.+++|++||.+++||... ++...+.+|.++|.+++|.-.+. .|++++.|.++++|.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 388888888775 78899999999999999876 78889999999999998865444 5999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC-------------------------CCceeee
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-------------------------SQANVAK 358 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-------------------------~~~~~~~ 358 (490)
+.+......... ..||...|.++...++|..+++|+-|..|.||+.. ++.++.+
T Consensus 177 ~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt 255 (423)
T KOG0313|consen 177 NVGENKVKALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT 255 (423)
T ss_pred cCchhhhhHHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence 888765443322 34888999999999999999999999999999921 1235567
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEee
Q 011256 359 FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
+.+|..+|.++.|++ ...+++++-|. |+.||+.++.....+.. ...+.++..+|...+|++|+.| +++||...
T Consensus 256 l~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 256 LEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred ecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 789999999999998 66888888886 99999999999888877 5789999999999999999999 99999866
Q ss_pred cCCcceEeeeecCCCCCcceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCCCC
Q 011256 436 VKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~ 487 (490)
+. .......+.+| .+.|.++.|+|... .|++|+.||++++||+.+...|
T Consensus 332 ~~-gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 332 GD-GSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred CC-CceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc
Confidence 53 23445566665 77999999999655 5889999999999999987755
No 89
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.1e-29 Score=207.97 Aligned_cols=243 Identities=22% Similarity=0.315 Sum_probs=217.9
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
-+.+|++.|....++.+....++++.|-+-+|||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..++|||++..
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p 132 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP 132 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence 467899999999999988899999999999999999999999987 8889999999999999999999999999999875
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
. .+...+.+|.+.|..+.|....+.|++++.|++|++||.+++..+..+... .+|+++.++++|.+|.++.
T Consensus 133 ~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~- 203 (334)
T KOG0278|consen 133 K--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAY- 203 (334)
T ss_pred C--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEec-
Confidence 4 456677899999999999999999999999999999999999999988754 7899999999999887764
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
.+.|.+||..+-..+..++ -...|.+.+.+|+...+++|+.|. ++.||..++..+..+. ..+.++|.|+.|+|+|..
T Consensus 204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCce
Confidence 5679999999988888877 456799999999999999999998 9999999999887762 234789999999999999
Q ss_pred EEEEecC--eEEEEEeec
Q 011256 421 LAVASAD--IRVYQVASV 436 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~ 436 (490)
.++|+.| +++|.....
T Consensus 282 yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eeccCCCceEEEEEecCC
Confidence 9999999 999998543
No 90
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-27 Score=205.67 Aligned_cols=283 Identities=17% Similarity=0.248 Sum_probs=220.4
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeee
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 269 (490)
..|+.|++.|.+||+|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|+++|.|..|.+||+..+ .+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g---s~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG---SPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC---CceeE
Confidence 789999999999999999999999999999888899999999999999999999999999999999999887 45555
Q ss_pred ecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 270 LKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 270 ~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
+. ...+|+...|||... .+++.-.+..-.+.++..+... .+.............+..|++.|+++++|+..|.+.++
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 54 678999999999653 3344334444555555543221 11111111112233455789999999999999999999
Q ss_pred ECCCCceeeeecCCC-CCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc---------ceeeeecCCCCCCeeEEEEcCC
Q 011256 349 DVKSQANVAKFDGHV-GAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------NFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 349 d~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~---------~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
|..+.+++..++... ..|..+.|+..|.+|+..+.|. |+.|+++... +.+.+...-....-.+++|+.+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999999998887655 7899999999999999999998 9999987321 1122222222455678999999
Q ss_pred CCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 418 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 418 ~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
|.|++.++.. +.||.- ..+.+++.+.+.. ......+.|+|-...+++- ..|.|+||....
T Consensus 261 geYv~a~s~~aHaLYIWE~----~~GsLVKILhG~k-gE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEK----SIGSLVKILHGTK-GEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ccEEEeccccceeEEEEec----CCcceeeeecCCc-hhheeecccccceeeeeec-cCCceEEEEeec
Confidence 9999999876 889986 6677888877652 2457789999988888877 689999998754
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=210.20 Aligned_cols=256 Identities=24% Similarity=0.416 Sum_probs=207.2
Q ss_pred EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC---------------CCccceeeeecccccceEEEEEecCC
Q 011256 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE---------------DGNYDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 222 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---------------~~~~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
...+..|..++.+.+|++||.++++|+.|..|+|+|++. ......++++..|.++|+++.|||..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345667999999999999999999999999999999761 11124678888999999999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee---cCCC
Q 011256 287 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHV 363 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~ 363 (490)
..|++|+.|++|++||+.......-++.. ....+|.++.|||.|.+|++|+....+++||+++-++...- ..|.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999765443333211 11267999999999999999999999999999998776554 3588
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcc
Q 011256 364 GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 440 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~ 440 (490)
+.|+++.++++|++.++++.|| |++||--+.+++.++........|.+..|..+|+|+++++.| +++|.+ .+.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi----~t~ 337 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI----STG 337 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee----cCC
Confidence 9999999999999999999999 999999999999999887778899999999999999999999 999999 566
Q ss_pred eEeeeecCCCCCcc---eEEEEEcCCCCeEEEEe-CCCcEEEecCCCC
Q 011256 441 NCIKTFPDLSGTGK---ATCVKFGPDAKYIAVGS-MDRNLRVFGLPGN 484 (490)
Q Consensus 441 ~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~ 484 (490)
.++..+.+....+. -+...|+....|++.-. ..+.+.-||..+.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 67777665421121 23445666666665543 2355667776554
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.4e-28 Score=226.91 Aligned_cols=241 Identities=18% Similarity=0.259 Sum_probs=211.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
+...+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.||.|..+|+..
T Consensus 212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 4445578999999999999999999999999999999999999998 99999999995 77899999999999999988
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 339 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 339 (490)
.. ....++.+|...|..+.|++++.++++|+.|+.+.|||......+..+. .|...|.+++|+| ...+||+|
T Consensus 290 ~~--~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-----~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 290 SQ--HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-----EHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred ch--hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-----ccceeeeEeeeCCCccCceEEc
Confidence 64 2223588999999999999999999999999999999997776666665 4568999999999 67889886
Q ss_pred c--CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC--C-EEEEECCCCcceeeeecCCCCCCeeEEEE
Q 011256 340 T--SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 340 ~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 414 (490)
+ .|+.|++||..+++.+..+. ....|.+|.|++..+-|+++... + |.||+..+.+.+..+..| ...|..+++
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~ 439 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLAL 439 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEE
Confidence 4 68999999999999998887 45689999999998777776544 3 999999998888888777 778999999
Q ss_pred cCCCCEEEEEecC--eEEEEEe
Q 011256 415 DHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 415 s~~~~~l~~~~~d--i~v~~~~ 434 (490)
+|+|..+++|+.| +++|++-
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCCCCEEEEecccCcEEecccc
Confidence 9999999999998 9999973
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=4.1e-28 Score=220.49 Aligned_cols=278 Identities=18% Similarity=0.330 Sum_probs=225.7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEec--cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
|..-|.++.++...+.++||+ .|.|+|||+... ..+..+. .....|.++..+|||+.|++|+.-.++.|||+..
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 556677888998889999987 567999998643 2333333 2456799999999999999999999999999987
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
.. ......+....-...+++.+||.+..++++.||.|.|||+.+...+..+. +|..++.|+.+++||..|.+|+
T Consensus 497 pT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----GhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 497 PT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred CC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-----CCCCCceeEEecCCCceeecCC
Confidence 42 22333333333456788999999999999999999999999998888775 6779999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
.|.+|+.||+++++.+.... ....|.++..+|++.||++|-.++ +.|-....... +..+.++..|.++.|.+.|+
T Consensus 571 lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---yqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---YQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc---eeecccccEEEEEEecccCc
Confidence 99999999999998776655 457899999999999999999997 87777665432 33444588999999999999
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
++++.+.| +..|... -+..+...+. ...|.++.+|.|.+|+++|+.|.+-.||.+
T Consensus 647 wfvStGkDnlLnawrtP----yGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTP----YGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeecCchhhhhhccCc----cccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999988 8899863 2333433333 678999999999999999999998888865
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-28 Score=202.34 Aligned_cols=236 Identities=21% Similarity=0.368 Sum_probs=197.1
Q ss_pred CCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCC-CcEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 187 KPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 187 ~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
.+++..++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++ ++..++++|.|++|++|+....
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-- 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-- 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--
Confidence 5688999999964 5888999999999999643 467889999999999999988 5567888899999999998776
Q ss_pred cceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS 341 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~ 341 (490)
..+.++.+|...|....|+|. .+.|++++.|+++++||++.......+. .|...+.|+.|+. +.+++++|+.
T Consensus 138 -~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----ah~~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 138 -NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-----AHNSEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred -cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-----eccceeEeecccccCCcEEEecCC
Confidence 778889999999999999995 5899999999999999998654443444 3447899999998 7789999999
Q ss_pred CCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCeeEEEEcC-
Q 011256 342 EALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDH- 416 (490)
Q Consensus 342 dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~- 416 (490)
|+.|++||+++. .++..+.+|.-.|..+.|||. ...|++++.|- ++|||...... +.+...| ..-+..+.|++
T Consensus 212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~ 289 (311)
T KOG0277|consen 212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLF 289 (311)
T ss_pred CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccc
Confidence 999999999875 578888999999999999997 56889999995 99999985543 3333333 56678888887
Q ss_pred CCCEEEEEecC--eEEEE
Q 011256 417 SGSYLAVASAD--IRVYQ 432 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~ 432 (490)
+..+++..+-| +.||+
T Consensus 290 ~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWN 307 (311)
T ss_pred cCceeeecccccceeeec
Confidence 46788888888 78876
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.5e-28 Score=200.25 Aligned_cols=249 Identities=21% Similarity=0.308 Sum_probs=202.9
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRV 255 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~i 255 (490)
.+...|++.|..+.....|..|||+++|++|+||....+ +++.++.||.++|..++|.. -|.+|++++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 456788899999999889999999999999999997653 56889999999999999954 7899999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCceEEEEcCC
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPD 332 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (490)
|.-..+ .+........|...|++++|.|. |-.|++++.||.|.+.+.+.. ....... ...|.-+|++++|.|.
T Consensus 85 Wke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki---~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 85 WKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI---VFAHEIGVNSVSWAPA 160 (299)
T ss_pred EecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh---hhccccccceeeecCc
Confidence 997764 67777788899999999999886 468999999999999988765 2111111 3467789999999985
Q ss_pred ---C-----------cEEEEEcCCCcEEEEECCCC--ceeeeecCCCCCeEEEEEcCC----CCEEEEEeCCC-EEEEEC
Q 011256 333 ---G-----------LILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSEN----GYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 333 ---~-----------~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~----~~~l~~~~~d~-i~iwd~ 391 (490)
| +.|++|+.|..|+||+..++ ..-.++.+|.+.|+.++|.|. ..+|++++.|+ +.||-.
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 4 56999999999999999876 334558899999999999996 35899999998 999977
Q ss_pred CCCcceee-eecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 392 RKLKNFRS-FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 392 ~~~~~~~~-~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+....... -..+.....+..+.||..|++|++++.| +.+|.-
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 63311111 1112235679999999999999999888 888864
No 96
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.9e-26 Score=226.38 Aligned_cols=228 Identities=13% Similarity=0.201 Sum_probs=177.0
Q ss_pred cccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc--------EEEEeccCccCEEEEEEeeCCCE-EEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQ--------IVTTLSGHSKKVTSVKFVTEGDL-FLTGSADK 251 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg 251 (490)
...+|.+.|.+++|+|+ +++|++|+.||.|+|||+.++. .+..+.+|...|.+++|+|++.. |++|+.||
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 34678999999999996 7899999999999999987542 34567899999999999998875 57899999
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCc-----eE
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-----TS 326 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~ 326 (490)
+|+|||+.++ .....+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+.. |...+ ..
T Consensus 149 tIrIWDl~tg---~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g-----H~g~~~s~~v~~ 219 (568)
T PTZ00420 149 FVNIWDIENE---KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI-----HDGGKNTKNIWI 219 (568)
T ss_pred eEEEEECCCC---cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec-----ccCCceeEEEEe
Confidence 9999999876 3444444 567899999999999999999999999999999988877653 33332 23
Q ss_pred EEEcCCCcEEEEEcCCC----cEEEEECCC-Cceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCccee
Q 011256 327 AAFHPDGLILGTGTSEA----LVKIWDVKS-QANVAKFD--GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 398 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg----~i~iwd~~~-~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 398 (490)
..|++++.+|++++.|+ .|+|||++. ++++..+. .+.+.+......++|.++++|+.|+ |++|++..+. +.
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~ 298 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IR 298 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EE
Confidence 34568888888877664 799999995 55555543 2333444444455689999999998 9999998763 34
Q ss_pred eeecCCCCCCeeEEEEcCCCC
Q 011256 399 SFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~ 419 (490)
.+....+..+...++|.|...
T Consensus 299 ~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 299 KVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eecccccCCCccceEEccccc
Confidence 444444467888999999643
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9.3e-27 Score=195.85 Aligned_cols=231 Identities=22% Similarity=0.361 Sum_probs=203.2
Q ss_pred EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 011256 224 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 303 (490)
Q Consensus 224 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 303 (490)
.++||..+++.+.++.+|++|++|+.|.++.||-...+ +.+.++.+|.+.|+|+....+.+++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 36789999999999999999999999999999987665 788999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-----CCcEEEEECC-------CCceeeeecCCCCCeEEEEE
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVK-------SQANVAKFDGHVGAVTAISF 371 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~ 371 (490)
++|+++..+... .+|..+.|+++|++++..+. .+.|.++|++ ..++...+..+...++.+-|
T Consensus 82 ~tGk~la~~k~~------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 82 ETGKQLATWKTN------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred CCCcEEEEeecC------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 999999998754 78999999999998887654 4689999998 44667778778899999999
Q ss_pred cCCCCEEEEEeCCC-EEEEECCCCcce-eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec
Q 011256 372 SENGYYLATAAHDG-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 372 s~~~~~l~~~~~d~-i~iwd~~~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 447 (490)
.|-+.+|++|.++| |.+||++++... .....+ ...|+.++++++..++++++.| -++||+ .....++++.
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~FiT~s~Dttakl~D~----~tl~v~Kty~ 229 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYFITGSKDTTAKLVDV----RTLEVLKTYT 229 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccCCcceEEecccCccceeeec----cceeeEEEee
Confidence 99999999999999 999999997554 333444 6699999999999999999999 999998 6677888876
Q ss_pred CCCCCcceEEEEEcCCCCeEEEEeC
Q 011256 448 DLSGTGKATCVKFGPDAKYIAVGSM 472 (490)
Q Consensus 448 ~~~~~~~v~~~~~s~~~~~l~s~~~ 472 (490)
. ..+|++.+++|-...++.||.
T Consensus 230 t---e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 230 T---ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred e---cccccceecccccceEEecCC
Confidence 5 678999999998777777653
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=8.1e-27 Score=228.31 Aligned_cols=236 Identities=24% Similarity=0.472 Sum_probs=210.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|.++|.+++|...++++++|+.|.++++||..+|++...+.+|.+.|.++.. .+.++++|+.|.+|++|++.++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~- 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG- 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc-
Confidence 6789999999999988889999999999999999999999999999999999977 5667889999999999999976
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.++..+.+|.++|.++..+ +.++++|+.||+|++||+.+++++..+. +|...|+++.+.+. ..+++|+.|
T Consensus 322 --~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-----gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 322 --ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-----GHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred --ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-----CCcceEEEEEecCc-ceEEeeeec
Confidence 7888888899999999997 8999999999999999999999999886 46789999988765 899999999
Q ss_pred CcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 343 ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 343 g~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
+.|++||+++. +++.++.+|..-+..+.+ .+++|++++.|+ |++||...+++.+.+... +...+..+++. ...
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEE 466 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cce
Confidence 99999999999 999999999988877766 678999999998 999999999999998875 35677777765 456
Q ss_pred EEEEecC--eEEEEEeec
Q 011256 421 LAVASAD--IRVYQVASV 436 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~ 436 (490)
+++++.+ +++|++...
T Consensus 467 il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEEecCCeeEEEecccC
Confidence 6666666 999998443
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=212.94 Aligned_cols=237 Identities=25% Similarity=0.369 Sum_probs=205.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+..++|++++|.+++..+++++.|+.+++|++...+...++.||++.|+++.|......+++|+.|.+|++||+...
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~- 293 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA- 293 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-
Confidence 3455678999999999999999999999999999999999999999999999999876666999999999999999875
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.|..++. ....+..|... ...+++|-.|++|++||+++..+...+... +.|+++..+++|..+.+++.|
T Consensus 294 --~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g------g~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 294 --YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG------GRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred --heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC------cceeeEeeccCCeEEeeecCC
Confidence 5655543 23445555554 667889999999999999999998888754 679999999999999999999
Q ss_pred CcEEEEECCCCceeeeecC----CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 343 ALVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
.++.++|+++......+.. .....+.+.|||++.|+++|+.|| |+||++.++++...+........|+++.|+|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 9999999999888777743 223488999999999999999999 99999999999888887755557999999999
Q ss_pred CCEEEEEecC--eEEE
Q 011256 418 GSYLAVASAD--IRVY 431 (490)
Q Consensus 418 ~~~l~~~~~d--i~v~ 431 (490)
|.+|++++.+ +.+|
T Consensus 443 G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 GSGLLSADKQKAVTLW 458 (459)
T ss_pred CchhhcccCCcceEec
Confidence 9999999988 7776
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.4e-27 Score=212.69 Aligned_cols=248 Identities=20% Similarity=0.381 Sum_probs=200.0
Q ss_pred ccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCc----------EEEEeccCccCEEEEEEeeCCC-EEEEEeCC
Q 011256 183 HKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQ----------IVTTLSGHSKKVTSVKFVTEGD-LFLTGSAD 250 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~d 250 (490)
...|.+.|+.+.+-|.. .++++++..+.|+|||..... +-.++.+|...-.+++|++... .|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34688899999999965 477888899999999975421 1237789998788899988544 79999999
Q ss_pred CcEEEEeCCCCCc----cceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 251 KTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 251 g~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
++|++||+..... ......+.+|...|..++|++.. ..|++++.|+.+.|||++++. .-......+|...+.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---SKPSHSVKAHSAEVN 276 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---CCCcccccccCCcee
Confidence 9999999977543 45567788999999999999865 688999999999999999731 111122457789999
Q ss_pred EEEEcC-CCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCccee---
Q 011256 326 SAAFHP-DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFR--- 398 (490)
Q Consensus 326 ~~~~~~-~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~--- 398 (490)
|++|+| ++.+||+|+.|++|.+||+|+. +++.++.+|...|.++.|+|+ ...|++++.|+ +.|||+..-...+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 999999 6789999999999999999975 678899999999999999997 56888888888 9999997643322
Q ss_pred ---------eeecCCCCCCeeEEEEcCCCCEEEEEec-C--eEEEEE
Q 011256 399 ---------SFESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQV 433 (490)
Q Consensus 399 ---------~~~~~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~ 433 (490)
.|.-.+|...|..+.|+|+..+++++-. | +.||.+
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 2444456888999999999988666544 4 999987
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.8e-26 Score=185.18 Aligned_cols=256 Identities=19% Similarity=0.311 Sum_probs=205.5
Q ss_pred cccceeeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-----EEEeccCccCEEEEEEeeC----CCEE
Q 011256 174 YTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTE----GDLF 244 (490)
Q Consensus 174 ~~~~~~~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~----~~~l 244 (490)
+.+.....-.++|++.|.|.+|+|+|.+|++|+.|++|++.-.+...+ -..+.-|.+.|..++|..+ +.+|
T Consensus 76 ~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 76 QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred CCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 333444456778999999999999999999999999999975543221 2356779999999999643 4467
Q ss_pred EEEeC-CCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC--CC
Q 011256 245 LTGSA-DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG--RP 321 (490)
Q Consensus 245 ~s~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~ 321 (490)
++++. |..|.+-|...+ +..+.+.+|++.|.++- +-++-.|++|+.|.+|++||++-..++..+......+ ..
T Consensus 156 ~s~gagdc~iy~tdc~~g---~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gles 231 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRG---QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLES 231 (350)
T ss_pred EecCCCcceEEEeecCCC---CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccc
Confidence 77664 566666676665 67788899999998873 3468899999999999999999999888876432211 23
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC--ccee
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFR 398 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~ 398 (490)
+.|.++++.|.|++|++|..|....+||++.++.++.+..|...|.|+.|+|...|+++|+.|. |++-|+... ..+.
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELP 311 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCc
Confidence 6789999999999999999999999999999999999999999999999999999999999997 999998743 2222
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
......+...+..+.|+|..--+++.+.| ..+|.+
T Consensus 312 ~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 312 IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 23333446778889999998888888888 888875
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-26 Score=218.50 Aligned_cols=277 Identities=18% Similarity=0.338 Sum_probs=228.3
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE--EEeccCccCEEE-EEEee-CCCEEEEEeCCCcEEEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV--TTLSGHSKKVTS-VKFVT-EGDLFLTGSADKTVRVW 256 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~~~-~~~~l~s~s~dg~i~iw 256 (490)
....+|+..|..+++.+ +..+++++.||++++|+-..++.+ ..+.+|.+-|.+ +++.+ ++..+++|+.|++|.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 45678888998888774 558999999999999997655443 456778888887 88875 44569999999999999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
..... .+..++.+|...|.|++...++. +++||.|.++++|-...-.. . ..+|...|.++..-|++ .+
T Consensus 87 ~~~~~---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~--~-----l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 87 KLSQA---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY--S-----LQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred ecCCC---CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc--c-----cCCcchheeeeeecCCC-cE
Confidence 98876 78899999999999999876666 99999999999998754322 2 45788999999999988 89
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
++|+.|.+|++|.- ++.+.+|.+|...|+.+++-+++ .|++++.|| |++|++ ++..+.....+ ...+.++...
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~ 228 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMA 228 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEec
Confidence 99999999999974 78899999999999999999764 567788888 999999 67777666555 7889999988
Q ss_pred CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 416 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.++..+++++.| ++||..+ .+...+... ...|+++++-++|. +++|+.||.||||......
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~------e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD------ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred CCCCeEEEecCCceEEEeecC------ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 899999999999 9999862 455554432 45889999988887 6678889999999987544
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-26 Score=229.63 Aligned_cols=250 Identities=17% Similarity=0.265 Sum_probs=209.8
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------------------CcEEEEeccCccCEEEEEEeeCCC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------------------GQIVTTLSGHSKKVTSVKFVTEGD 242 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~ 242 (490)
..+..|.+.|+|+.|+|||.+||+|++|+.|.||.... .+.+..+.+|...|..++|+|++.
T Consensus 63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 34677899999999999999999999999999998762 135678889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCC
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRP 321 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~ 321 (490)
+|++++.|++|.||+..+- ..+..+.+|.+.|..+.|.|-|+||++-+.|++|+||++.+-...+.+..... ....
T Consensus 143 ~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred EEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 9999999999999998775 88899999999999999999999999999999999999887666666653321 1223
Q ss_pred CCceEEEEcCCCcEEEEEcC----CCcEEEEECCCCceeeeecCCCCCeEEEEEcCC-----CC------------EEEE
Q 011256 322 EGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-----GY------------YLAT 380 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~------------~l~~ 380 (490)
..+.-+.|+|||.+|++... -..+.|.+-.+.+.-..+.+|.+++.++.|+|. .. .+++
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 45778999999999998642 347888888777888889999999999999981 11 6788
Q ss_pred EeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEe
Q 011256 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 381 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 434 (490)
|+.|+ |.||.....+++..+...- ...|..++|+|||..|++++.| +.++.+.
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 99998 9999998777765544322 5789999999999999999999 5556553
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.5e-27 Score=195.89 Aligned_cols=252 Identities=17% Similarity=0.222 Sum_probs=202.9
Q ss_pred ccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec--CCCEEEEEECCCeEEEEeC
Q 011256 226 SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDL 303 (490)
Q Consensus 226 ~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~ 303 (490)
..|...|..+...-.|..|+|++.|++|+|+.+...+....+.++.+|.++|+.++|.. -|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 46888888888877899999999999999999998776688899999999999999964 6899999999999999999
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCC--CcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCCeEEEEEcCC---C
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSEN---G 375 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~---~ 375 (490)
+++....... ...|...|++++|.|. |.+|++++.||.|.|.+.+.. ........|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 88 ENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred CCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 8885443333 4467799999999995 679999999999999998764 222334678899999999995 4
Q ss_pred -----------CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC----CEEEEEecC--eEEEEEeecC
Q 011256 376 -----------YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG----SYLAVASAD--IRVYQVASVK 437 (490)
Q Consensus 376 -----------~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~----~~l~~~~~d--i~v~~~~~~~ 437 (490)
+.|++|+.|. |+||+.....-...-....|...++.++|.|.- .+|++++.| +.||..+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 6699999998 999999886443333334458899999999974 679999999 7778765433
Q ss_pred CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 438 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
..|.... +.. ....+..+.||..|++|+.++.|+.|.+|.-..
T Consensus 245 e~wk~tl-l~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPWKKTL-LEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred Ccccccc-ccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 4443211 111 256799999999999999999999999997543
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=206.34 Aligned_cols=244 Identities=23% Similarity=0.334 Sum_probs=205.1
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
..+.++|...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|+||++++.||+..+.|+.
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 34778999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred CCCccceeeeec--ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 260 EDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 260 ~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
++. ++.... ...-.+++.+|||||..|.+|..||.++|||+.++..+..|. +|.++|..++|+.+|.+|+
T Consensus 334 ~g~---~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-----ght~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 334 SGS---QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-----GHTGPVKAISFSENGYWLA 405 (506)
T ss_pred CCc---EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-----CCCCceeEEEeccCceEEE
Confidence 873 333322 233468999999999999999999999999999988666554 6789999999999999999
Q ss_pred EEcCCCcEEEEECCCCceeeeecCC-CCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC--cceeeeecCCCCCCeeEEE
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSETPTNSVD 413 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~i~~i~ 413 (490)
+++.|+.|++||+|..+...++... ..++.++.|.+.|.+|+.++.+- |++++-.+. .++..+. .+.+..+.+.
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~ 483 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVR 483 (506)
T ss_pred EEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceee
Confidence 9999999999999998877777543 33799999999999999996663 666654333 3333443 3366889999
Q ss_pred EcCCCCEEEEEecC--eEEEEE
Q 011256 414 FDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 414 ~s~~~~~l~~~~~d--i~v~~~ 433 (490)
|....+++++++.+ +++|.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 99999999999998 666643
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=4e-26 Score=219.53 Aligned_cols=291 Identities=22% Similarity=0.346 Sum_probs=241.6
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~ 261 (490)
..++.+.|+++.-+|--+.++.|..+|+|.++|+..++.+.+++...+.|++++|..||. .+++|+..|.+.+||++..
T Consensus 198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k 277 (910)
T KOG1539|consen 198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK 277 (910)
T ss_pred ecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC
Confidence 345668999999999999999999999999999999999999995569999999999998 6788888899999999885
Q ss_pred Cccceeee-ecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-----------------EEEe-----------
Q 011256 262 GNYDCKHT-LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-----------------LTQV----------- 312 (490)
Q Consensus 262 ~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------~~~~----------- 312 (490)
+.... ...|.+.|..+.|.|....+++++.|..+++|-.+++.- +..+
T Consensus 278 ---kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~ 354 (910)
T KOG1539|consen 278 ---KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAK 354 (910)
T ss_pred ---eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecc
Confidence 33333 347889999999999999999999998888774432100 0000
Q ss_pred --------------------------------------------------------------------------------
Q 011256 313 -------------------------------------------------------------------------------- 312 (490)
Q Consensus 313 -------------------------------------------------------------------------------- 312 (490)
T Consensus 355 ~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~ 434 (910)
T KOG1539|consen 355 QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS 434 (910)
T ss_pred cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc
Confidence
Q ss_pred -----ecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee---cCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 313 -----SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 313 -----~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
...........+++++.++-|++.+.|+..|.|-+|++.+|-....+ ..|.++|++++...-++.+++++.+
T Consensus 435 G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 435 GRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCc
Confidence 00000001135678899999999999999999999999999888888 4799999999998888999999999
Q ss_pred C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 385 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 385 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
| +++||+.+......+.. ...+.++..+.....++.+..+ |+++|. .+...++.|.+| .+.|++++||
T Consensus 515 Gilkfw~f~~k~l~~~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~----~t~kvvR~f~gh--~nritd~~FS 585 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDV----VTRKVVREFWGH--GNRITDMTFS 585 (910)
T ss_pred ceEEEEecCCcceeeeecc---CCCcceeeeeehhhhhhhhcCceeEEEEEc----hhhhhhHHhhcc--ccceeeeEeC
Confidence 9 99999999887777766 5678899999988999999888 889987 556677888886 8899999999
Q ss_pred CCCCeEEEEeCCCcEEEecCCCCC
Q 011256 462 PDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 462 ~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|||++|++++.|++|++||++++.
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcc
Confidence 999999999999999999998764
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.4e-27 Score=210.26 Aligned_cols=229 Identities=24% Similarity=0.380 Sum_probs=200.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC------
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE------ 260 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~------ 260 (490)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|.++..+.+|-..|+|+.|+.||.+|++||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999997532
Q ss_pred CCccceeeeecccccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
.....+.+.+..|.-+|+.+...+.| .+++++|.|.++++||+..+..+..+... ..+.+++++|-+..+++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------SSIKAVALDPAERVVYI 234 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------CcceeEEEcccccEEEe
Confidence 12446788899999999999987653 69999999999999999999998888654 78999999999999999
Q ss_pred EcCCCcEEEEECCCC----------------ceeeeecCCCC--CeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceee
Q 011256 339 GTSEALVKIWDVKSQ----------------ANVAKFDGHVG--AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 399 (490)
Q Consensus 339 g~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 399 (490)
|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.|| |.|||+.+.+++++
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 999999999887432 23455678888 999999999999999999999 99999999999988
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEE
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
+... .++|+.+.+.|-.+-.+.
T Consensus 315 l~~~--kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 315 LQTS--KGPVTNLQINPLERGIIL 336 (476)
T ss_pred Hhhh--ccccceeEeeccccceec
Confidence 8743 788999998765444443
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=204.06 Aligned_cols=291 Identities=20% Similarity=0.321 Sum_probs=223.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC---
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--- 262 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--- 262 (490)
.+..|.|++|.++|+ ++||.++|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|+.|..||-.-..
T Consensus 245 ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~ 322 (626)
T KOG2106|consen 245 EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRE 322 (626)
T ss_pred cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEecccccccccc
Confidence 346899999998876 568999999999999888887777799999999999999985 559999999999821100
Q ss_pred --------------------------c--------cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE
Q 011256 263 --------------------------N--------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC 308 (490)
Q Consensus 263 --------------------------~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 308 (490)
+ -.......+|....+.++.+|+.+.+++++.|+.+++|+ ..+.
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 0 011122356888999999999999999999999999999 3344
Q ss_pred EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EE
Q 011256 309 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK 387 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~ 387 (490)
....... .++.|+.|+|.| .++.|+..|...+.|..+...+..-.. ..+++++.|+|+|.+|++|+.|+ |+
T Consensus 401 ~wt~~~~------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 401 EWTKIIE------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred eEEEEec------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 4333322 678999999999 999999999999999998665555444 78999999999999999999998 99
Q ss_pred EEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc--------c---eEeeee--cCCCCC
Q 011256 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD--------W---NCIKTF--PDLSGT 452 (490)
Q Consensus 388 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~--------~---~~~~~~--~~~~~~ 452 (490)
||-+.............+..+|+.+.|++|++++.+-+.| +-.|.. ..-.. | .+..-| .+..+.
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~-~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~ 551 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP-SECKQITSVKDVKWATYTCTLGFEVFGGSDG 551 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc-ccCcccceecceeeeeeEEEEEEEEecccCC
Confidence 9988765443333333335899999999999999999988 777732 11111 1 111111 112234
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCCC
Q 011256 453 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSE 489 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 489 (490)
..|..++-+...+++++|.+.|+|++|..+-..+.++
T Consensus 552 t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 552 TDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred chHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 5567777788889999999999999999987665443
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=218.07 Aligned_cols=278 Identities=19% Similarity=0.268 Sum_probs=224.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
+...|..+.+.|+|.|+|.+|++++.||.|++|+.... +...++..+...|.+++. ++.+|++|+.+++|.+|.+..
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 34578889999999999999999999999999987655 444444447788888876 566899999999999999988
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
+.. -..+....-++.+++|+-+|++++.||.|-.|++.++.+......+. +|..+|.++.|+|++.+||+.+
T Consensus 86 ~~~---~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-----gh~apVl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 86 GEE---DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-----GHDAPVLQLSYDPKGNFLAVSS 157 (933)
T ss_pred CCc---cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-----ccCCceeeeeEcCCCCEEEEEe
Confidence 632 22334456789999999999999999999999999999888777665 5679999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecC--------CCCCeEEEEEcCCCCEEEEEeCC-CEEEEECCCCcceeeeecCCCCCCeeE
Q 011256 341 SEALVKIWDVKSQANVAKFDG--------HVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
.||.|++||+.++.+..++.+ ....+..++|+|+|..|++...+ .|++|+.........+....+...+..
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 999999999999887766643 13456789999995555555555 599999999888888777665666999
Q ss_pred EEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 412 VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
+.|+|+|.|||+++.+ |.||++++ ...|.....|+|++|.|++.-+-.-...|...+|
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t----------~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT----------HERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc----------chhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999998 99999843 1113336689999999998876655555554444
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.3e-24 Score=204.40 Aligned_cols=268 Identities=16% Similarity=0.224 Sum_probs=201.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCccceeeeecccccce
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++..+ ++++.++.|++||..++ .....+..+. .+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATG---EVIGTLPSGP-DP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCC---cEEEeccCCC-Cc
Confidence 35788999999999999999998888886654 6789999999876 56778899999999875 4444444443 35
Q ss_pred EEEEEecCCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-cEEEEECCCCce
Q 011256 278 QAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVKSQAN 355 (490)
Q Consensus 278 ~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~ 355 (490)
..+.|+|+++.++++ +.++.+.+||+.++..+..+... ..+.+++|+|+|.+++++..++ .+.+||..+++.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 678999999877655 56899999999998777666421 3467899999999999988765 567789988877
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEe-CCC-EEEEECCCCcceeeeecCC-----CCCCeeEEEEcCCCCEEEEEe--c
Q 011256 356 VAKFDGHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSD-----SETPTNSVDFDHSGSYLAVAS--A 426 (490)
Q Consensus 356 ~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~-----~~~~i~~i~~s~~~~~l~~~~--~ 426 (490)
...+.. ...+.+++|+|+|.+|++++ .++ |++||+++++....+.... .......+.|+|++++++++. .
T Consensus 150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 150 VDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 655432 23567899999999886655 456 9999999987766554321 112245688999999866543 3
Q ss_pred C-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCC
Q 011256 427 D-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGND 485 (490)
Q Consensus 427 d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~ 485 (490)
+ +.+|+. ..+.....+.. ...+.+++|+|+|++|+++ +.+|.|++||+.+..
T Consensus 229 ~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 229 NRVAVVDA----KTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CeEEEEEC----CCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 3 889987 33444433321 3468899999999999886 468999999998765
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.8e-27 Score=223.09 Aligned_cols=287 Identities=20% Similarity=0.315 Sum_probs=223.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeccC---ccCEEEEEEee-CCCEEEEEeCCCcEEEEeC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGH---SKKVTSVKFVT-EGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h---~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~ 258 (490)
+..+.+|..+++-..|+.+|.. .+.||..... ++...+... .-.+..+.|.. +.++||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 4567888888888888877654 6777765432 222222211 12345677864 5679999999999999999
Q ss_pred CCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLIL 336 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 336 (490)
.....-+.+..|..|...|+++.||+.. .+|++|+.||+|++||++.......+.. ....|+.+.|+| .+..|
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----NSESIRDVKFSPGYGNKF 192 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-----cchhhhceeeccCCCceE
Confidence 8743336667888999999999999865 6899999999999999999887777664 347899999999 67899
Q ss_pred EEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc--eeeeecCCCCCCeeEE
Q 011256 337 GTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSDSETPTNSV 412 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i 412 (490)
+++...|.+.+||+|.. ++...+..|.++|.|+.|+|++.+|++|+.|+ |+|||+...+. ..++.. ..++.++
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT---iapv~rV 269 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT---IAPVGRV 269 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee---cceeeee
Confidence 99999999999999975 56778889999999999999999999999998 99999986544 334433 6889999
Q ss_pred EEcCCCCE-EEEEec--C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-CCCeEEEEeCCCcEEEecCCCCCC
Q 011256 413 DFDHSGSY-LAVASA--D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 413 ~~s~~~~~-l~~~~~--d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
.|-|...+ |++++. | |+||++. ..+-+..++..| ...++.++|.. |...|.+++.||.|..-.+++...
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvr---RPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVR---RPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeec---cccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 99998766 444432 2 9999994 445556666665 77899999965 566799999999987766665544
Q ss_pred C
Q 011256 487 P 487 (490)
Q Consensus 487 ~ 487 (490)
|
T Consensus 345 p 345 (839)
T KOG0269|consen 345 P 345 (839)
T ss_pred h
Confidence 3
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.3e-26 Score=215.51 Aligned_cols=286 Identities=21% Similarity=0.258 Sum_probs=226.6
Q ss_pred CCCCCeEEEEecC-----------CCCEEEEEeCCCcEEEEeCCCC---cEEEE--e-----------------------
Q 011256 185 TSKPGIVSLDIHY-----------SKDVIATGGVDTNAVLFDRPSG---QIVTT--L----------------------- 225 (490)
Q Consensus 185 ~h~~~I~~~~~~~-----------~~~~l~~~~~dg~i~iwd~~~~---~~~~~--~----------------------- 225 (490)
-|...|+.+.--| -...++|++.|++|++||+..+ ...+. +
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 3555666665444 1236899999999999998652 11100 0
Q ss_pred ---------ccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec---CCCEEEEEE
Q 011256 226 ---------SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA---TNKYFVTAS 293 (490)
Q Consensus 226 ---------~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~ 293 (490)
-+....|.+++.+|+|++|++|..-|+++||++... .....+..|..+|.|+.|+. ..++|++++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l---~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL---EYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh---hhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 012345899999999999999999999999999875 56667789999999999984 347899999
Q ss_pred CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--cEEEEEcCCCcEEEEECCCCceeeeecC-----CCCCe
Q 011256 294 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTSEALVKIWDVKSQANVAKFDG-----HVGAV 366 (490)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~~~~i 366 (490)
.|..|.+||+...-.+... ..+|...|+++.|...| ..+++++.|..|.+--.+.......+.. ....+
T Consensus 524 rdRlIHV~Dv~rny~l~qt----ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLVQT----LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred CCceEEEEecccccchhhh----hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 9999999998765443322 45778999999999877 6788888888776543322111122211 24578
Q ss_pred EEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC-CCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceE
Q 011256 367 TAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC 442 (490)
Q Consensus 367 ~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~ 442 (490)
+.++..|+.+++++++.|. |+|||+.+++..+.|+... +++....+..+|.|.|+++.+.| +.+||+ ...++
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df----~sgEc 675 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF----VSGEC 675 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe----ccchh
Confidence 9999999999999999997 9999999999999998754 35778889999999999999998 999999 67888
Q ss_pred eeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 443 IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 443 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+....+| ...|+.+.|.+|.+.|++.+.||.|.||.++.
T Consensus 676 vA~m~GH--sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 VAQMTGH--SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhcCc--chheeeeeecccchhheeecCCceEEEEECch
Confidence 8888886 78999999999999999999999999999874
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.8e-25 Score=201.70 Aligned_cols=231 Identities=20% Similarity=0.295 Sum_probs=196.3
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
+.|...|.+++.++||++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....|++++.|++|++|+++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-- 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-- 276 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence 478899999999999999999999999999999999999999999999999999887778999999999999999875
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
..+.++.+|.+.|.+|....-++.+-+|+.|+++++|++.....+... ++...+-|++|-.+ ..|++|+.+|
T Consensus 277 -s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifr------g~~~sidcv~~In~-~HfvsGSdnG 348 (479)
T KOG0299|consen 277 -SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFR------GGEGSIDCVAFIND-EHFVSGSDNG 348 (479)
T ss_pred -HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeee------CCCCCeeeEEEecc-cceeeccCCc
Confidence 677788999999999998877888888889999999999554333222 33467889998754 5789999999
Q ss_pred cEEEEECCCCceeeeecC------------CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC----cceeeeecCCCC
Q 011256 344 LVKIWDVKSQANVAKFDG------------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL----KNFRSFESSDSE 406 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~------------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~----~~~~~~~~~~~~ 406 (490)
.|.+|++-..+++.+... ++..|++++..|...++++|+.+| |++|-+..+ .++..+. ..
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~ 425 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LV 425 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cc
Confidence 999999998888776531 123799999999999999999998 999988765 3344444 36
Q ss_pred CCeeEEEEcCCCCEEEEEecC
Q 011256 407 TPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~d 427 (490)
+.|++++|+++|..+++|...
T Consensus 426 GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 426 GFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cEEEEEEEccCCCEEEEeccc
Confidence 789999999999988887655
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.6e-25 Score=188.76 Aligned_cols=286 Identities=17% Similarity=0.368 Sum_probs=214.9
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcE----------EE-----EeccCccCEEEEEEee-CCCE
Q 011256 181 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQI----------VT-----TLSGHSKKVTSVKFVT-EGDL 243 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~----------~~-----~~~~h~~~v~~l~~~~-~~~~ 243 (490)
.+...|.+.|+++.+.+ .|+++++|+.||.|.+||++.... +. .-.+|.-.|.++.|-| |..+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 45667889999999998 588999999999999999875321 11 1136888999999999 6668
Q ss_pred EEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 011256 244 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320 (490)
Q Consensus 244 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 320 (490)
|.+++.|.+++|||.++. +....|. ..+.|.+-+++|- ..++++|..|-.|++.|+.+|.+.+.+. +|
T Consensus 117 FtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-----GH 187 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-----GH 187 (397)
T ss_pred eecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-----cc
Confidence 999999999999999885 4455544 4567888888874 3477888888999999999999888776 67
Q ss_pred CCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCC-ceeeee--------------cCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 321 PEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQ-ANVAKF--------------DGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 321 ~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
...|.++.|+|.. -.|++|+.||.|++||++.. .+...+ ..|.+.++.++|..+|.++++++.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 7999999999965 56889999999999999864 333333 2467889999999999999999888
Q ss_pred C-EEEEECCCCcceee-eecCCC---CCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEE
Q 011256 385 G-VKLWDLRKLKNFRS-FESSDS---ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCV 458 (490)
Q Consensus 385 ~-i~iwd~~~~~~~~~-~~~~~~---~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 458 (490)
. +++|+..++..... +....+ ...-..+.--..+.++..-..+ +.++.+ ..+..+..+..| ...|.|.
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~----~sgs~ir~l~~h--~k~i~c~ 341 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNL----LEGSFVRRLSTH--LKRINCA 341 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEc----cCceEEEeeecc--cceeeEE
Confidence 7 99999988765322 211111 1111112211122232222223 666666 556677777776 7789999
Q ss_pred EEcCCCCeEEEEeCCCcEEEecC
Q 011256 459 KFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 459 ~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
.+-|+-+.+.+|..|+.|..|..
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecCchhhhhccccCCccccccc
Confidence 99999899999999999999976
No 115
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-24 Score=187.16 Aligned_cols=276 Identities=20% Similarity=0.298 Sum_probs=204.8
Q ss_pred eeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeccCccCEEEEEEee--CCCEEEEEeCCCc
Q 011256 179 SHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKT 252 (490)
Q Consensus 179 ~~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~ 252 (490)
..++..+|++-|.|+.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+++++.|++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34678889999999999999999999999999999996432 45667789999999999954 5889999999999
Q ss_pred EEEEeCCCC------CccceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecC--------C
Q 011256 253 VRVWQGSED------GNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDA--------G 316 (490)
Q Consensus 253 i~iwd~~~~------~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~ 316 (490)
+.||.-... ..+....++......|+.+.|.|. |-.+++++.||.++||+....-.+...... .
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 999975221 234556677778889999999985 568999999999999987654433322211 1
Q ss_pred CCCCCCCceEEEEcCC---CcEEEEEcCC-----CcEEEEECCCC----ceeeeecCCCCCeEEEEEcCC-C---CEEEE
Q 011256 317 TDGRPEGYTSAAFHPD---GLILGTGTSE-----ALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN-G---YYLAT 380 (490)
Q Consensus 317 ~~~~~~~v~~~~~~~~---~~~l~~g~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~-~---~~l~~ 380 (490)
...+.....|+.|+|. ..+|++|+.+ +.++||....+ ..+.++.+|..+|+.|+|.|+ | ..|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 1224466789999984 4788888876 47888876543 345567789999999999997 3 57899
Q ss_pred EeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 381 AAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 381 ~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
++.|||+||.+....... ... .+. .|++ +.++ ....+..+..| .+.|..+.|
T Consensus 245 A~kDgv~I~~v~~~~s~i-~~e-----e~~----~~~~-----------~~~l-----~v~~vs~~~~H--~~~VWrv~w 296 (361)
T KOG2445|consen 245 ATKDGVRIFKVKVARSAI-EEE-----EVL----APDL-----------MTDL-----PVEKVSELDDH--NGEVWRVRW 296 (361)
T ss_pred eecCcEEEEEEeeccchh-hhh-----ccc----CCCC-----------cccc-----ceEEeeeccCC--CCceEEEEE
Confidence 999999999987532211 100 000 0110 0011 12334455554 889999999
Q ss_pred cCCCCeEEEEeCCCcEEEecCC
Q 011256 461 GPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 461 s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
+-.|..|++.|+||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999764
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.9e-25 Score=190.09 Aligned_cols=246 Identities=17% Similarity=0.199 Sum_probs=189.7
Q ss_pred cCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC
Q 011256 227 GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 305 (490)
Q Consensus 227 ~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 305 (490)
...+.|.+|+|+| ...+++.||.||+||+|+++..+.+.. .....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4567899999999 555777999999999999988544333 45567999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCCCCceEEEEcCCCc--EEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 011256 306 GICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 383 (490)
++....- .|..+|.++.|-+... .|++|+-|.+|++||.+...++.++. -...++++..- ..+++++..
T Consensus 104 ~Q~~~v~------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata 174 (347)
T KOG0647|consen 104 GQVSQVA------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATA 174 (347)
T ss_pred CCeeeee------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEec
Confidence 9654433 4568999999988665 99999999999999999999998887 34577777653 346666666
Q ss_pred CC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCC-------Cc
Q 011256 384 DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG-------TG 453 (490)
Q Consensus 384 d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~-------~~ 453 (490)
+. |.+|+|+++..............+.+++..++....+.|+-+ +.|..++.... ..-.+|+.|.. --
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceE
Confidence 65 999999876543322222236778999999998888999888 55566654321 22233334321 23
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 454 KATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 454 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.|++++|+|.-..|+++|.||++.+||-+..
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999999999999999999997643
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=8.5e-26 Score=206.20 Aligned_cols=261 Identities=21% Similarity=0.303 Sum_probs=198.3
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc-ceeeee-cccccceEEEEEecCCCEEEEEECCC
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY-DCKHTL-KDHTAEVQAVTVHATNKYFVTASLDN 296 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~dg 296 (490)
+.....+.+|+..|.++++.|.|-.|++|+.|-+|++||+...... ...+.+ ......|+++.|++.|..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 4445678899999999999999999999999999999999764311 111111 23345799999999999999999999
Q ss_pred eEEEEeCCCCeEEEEeec-------CCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCc-eeeeec-----CC
Q 011256 297 TWCFYDLSSGICLTQVSD-------AGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQA-NVAKFD-----GH 362 (490)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~-~~~~~~-----~~ 362 (490)
..+++|-........... ....+|...++|.+|+|+. ..|++++.||+++|||+...+ ....++ +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999766554443322 2356899999999999965 688999999999999997653 233332 23
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc---eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeec
Q 011256 363 VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 436 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~ 436 (490)
.-+++.++|+++|.++++|..|| |.+||.++... ...-..|.....|+|+.||++|++|++-+.| +++|+++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 45789999999999999999999 99999865432 2222334335589999999999999999888 999999654
Q ss_pred CCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe------CCCcEEEecCC
Q 011256 437 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS------MDRNLRVFGLP 482 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~v~iw~~~ 482 (490)
++ ++....+....-.-+.++|||+.++|++|. ..|.+.+||-.
T Consensus 397 kk---pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 397 KK---PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred cc---chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 43 344444443344567899999999999985 35678888754
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=200.99 Aligned_cols=264 Identities=19% Similarity=0.321 Sum_probs=209.6
Q ss_pred CcEEEEeCCCCcEEEEeccCc-cCEEEEEEeeCCCEEEEEeC-CCcEEEEeCCCCCccceeeeecccccceEEEEEecCC
Q 011256 209 TNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
.++.+||+.+|....++++.. ..-.++..- ++.+++++.. ...|.+|.+..... .....--.++|.+++-+|+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~---~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ---VVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh---hhhhcccccceeeeecCCCc
Confidence 459999999999988888652 222222211 3456666653 45789999876432 22222345789999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC---------CCceee
Q 011256 287 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK---------SQANVA 357 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~---------~~~~~~ 357 (490)
.+++.|+..|.|++|.+.+|..+..+. .|-..|+|+.|+.||.+|++|+.||.|.+|++. +-++.+
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~-----aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLS-----AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHH-----hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee
Confidence 999999999999999999999887774 455889999999999999999999999999863 346788
Q ss_pred eecCCCCCeEEEEEcCC--CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEe
Q 011256 358 KFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 434 (490)
Q Consensus 358 ~~~~~~~~i~~l~~s~~--~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 434 (490)
.+..|.-+|+.+...+. ..+|++++.|. +++||+..+..+..+.. ...+.+++.+|.+..+++|+.+.+||...
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeee
Confidence 88999999999988765 46899999997 99999999999888887 57899999999999999999997776553
Q ss_pred ecC--------------CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 435 SVK--------------ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 435 ~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
-.. ........+.+|.....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 211 11234455666655569999999999999999999999999998753
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.5e-27 Score=225.91 Aligned_cols=234 Identities=25% Similarity=0.425 Sum_probs=214.3
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..|...+.|+..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+++..+|++|+.+|+|++||++..
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-- 102 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-- 102 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--
Confidence 356677888888777899999999999999998877778889999999999999999999999999999999999986
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
+.++++.+|...+..+.|+|-+.|+++|+.|+.+++||++...+.+.+. +|...+.++.|+|+|.+++.|+.|.
T Consensus 103 -k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-----s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 103 -KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-----SHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred -hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-----CCcceeEEEeecCCCceeeccCCcc
Confidence 7788999999999999999999999999999999999999888888775 3568899999999999999999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
.++|||+..|+....|..|.+.+..+.|+|...+++.|+.|. +++||+++...+...... ...|.+..|+|++..++
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeee
Confidence 999999999999999999999999999999999999999998 999999988877666654 67899999999999999
Q ss_pred EEecC
Q 011256 423 VASAD 427 (490)
Q Consensus 423 ~~~~d 427 (490)
+|...
T Consensus 255 ~G~q~ 259 (825)
T KOG0267|consen 255 SGEQI 259 (825)
T ss_pred cCchh
Confidence 98776
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.5e-27 Score=203.70 Aligned_cols=242 Identities=21% Similarity=0.361 Sum_probs=199.0
Q ss_pred EEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEE
Q 011256 222 VTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCF 300 (490)
Q Consensus 222 ~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i 300 (490)
+..+.||.+.|.|++=+|.. ..+++|+.||.|+|||+... .+..++..|.+.|..|++.. ..+++++.|.+|+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 44567899999999999876 67999999999999999886 78999999999999999975 78999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC-CEEE
Q 011256 301 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLA 379 (490)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~ 379 (490)
|.++.. ...++... ..+..+.-+..+..+++++. .|.|||.....++..+.-....|.++.|+|.. ..|+
T Consensus 134 wk~~~~-p~~tilg~------s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 134 WKIDGP-PLHTILGK------SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeccCC-cceeeecc------ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 998764 44444322 56677777777888998875 49999999999999998778899999999975 4566
Q ss_pred EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceE
Q 011256 380 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT 456 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 456 (490)
+|..|+ |.+||+|...++..+.. ....+.|+|+|.+-.+.+++.| +..||+. .....+..+.+| ...|.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~nlY~~DmR---~l~~p~~v~~dh--vsAV~ 276 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNFVAANEDHNLYTYDMR---NLSRPLNVHKDH--VSAVM 276 (433)
T ss_pred eeccCCceEEEecccCCccceeee---eccccceecCccccceeeccccccceehhhh---hhcccchhhccc--ceeEE
Confidence 666776 99999999999888776 4567889999977778888888 5555552 223344455554 78999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 457 CVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 457 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
++.|||.|+-+++||.|.+|+||.+..+.
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCc
Confidence 99999999999999999999999987654
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.9e-26 Score=213.26 Aligned_cols=293 Identities=13% Similarity=0.210 Sum_probs=228.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEEEEeccCccCEEEEEE-eeCCCEEEEEeCCCcEEEEeCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKF-VTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~-~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
...|.+.|+.+....+++.|++++.|-+|++|+...+ -+..++..|...|.|+++ .++..++++||.|+.|.+||++
T Consensus 69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 4567889999999999999999999999999998776 567788899999999999 7788899999999999999998
Q ss_pred CCCc-------cceeeeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 260 EDGN-------YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 260 ~~~~-------~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
++.. ......+. ++..+|++++.++.|..|++|+..+.+++||.++++.+..+. +|...|.++-.++
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-----GHTdNVr~ll~~d 223 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-----GHTDNVRVLLVND 223 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-----ccccceEEEEEcC
Confidence 7521 11222333 788999999999999999999999999999999998887775 6779999999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCe
Q 011256 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPT 409 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i 409 (490)
||..+++++.||+|++||+...+++.++..|...|.++..+|+-..+.+|+.++ |..=|+++... ...+.. ..++
T Consensus 224 DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv 300 (735)
T KOG0308|consen 224 DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPV 300 (735)
T ss_pred CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---CCch
Confidence 999999999999999999999999999999999999999999999999999998 99999998533 333332 4566
Q ss_pred eEEEEcCCCC--EEEEEecCeEEEEEeecC------Ccce---------Eee---eecCCCCCcceEEEEEcCCCCeEEE
Q 011256 410 NSVDFDHSGS--YLAVASADIRVYQVASVK------ADWN---------CIK---TFPDLSGTGKATCVKFGPDAKYIAV 469 (490)
Q Consensus 410 ~~i~~s~~~~--~l~~~~~di~v~~~~~~~------~~~~---------~~~---~~~~~~~~~~v~~~~~s~~~~~l~s 469 (490)
..+..+...+ ++.+...+|+-|...... ..+. +-. ......+...|...++-.|.+++++
T Consensus 301 ~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlT 380 (735)
T KOG0308|consen 301 LKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLT 380 (735)
T ss_pred hhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEee
Confidence 6666653332 333333336666432100 0000 000 0000112334555556668899999
Q ss_pred EeCCCcEEEecCCC
Q 011256 470 GSMDRNLRVFGLPG 483 (490)
Q Consensus 470 ~~~dg~v~iw~~~~ 483 (490)
-...|.+.+||+-.
T Consensus 381 kDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 381 KDAKGNVALWDILA 394 (735)
T ss_pred ecCCCCEEEEEeee
Confidence 99999999999854
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.2e-26 Score=208.19 Aligned_cols=247 Identities=20% Similarity=0.314 Sum_probs=205.2
Q ss_pred cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecc--cccceEEEEEecCCCEEEEEECCCeEEEEeCC
Q 011256 227 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 304 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 304 (490)
.|..-|.++..+...++++||+. |.|+|||+...++...+..+.. ....|.++.++|+|+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 48888888999988889999887 7899999988765555555543 45679999999999999999999999999998
Q ss_pred CCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 305 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
........... ...-...+++++||.++.++++.||.|.|||+.+...++.|.+|...+.||.++++|..|.+|+-|
T Consensus 496 apTprikaelt---ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 496 APTPRIKAELT---SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CCCcchhhhcC---CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 76543322211 111346788999999999999999999999999999999999999999999999999999999999
Q ss_pred C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC
Q 011256 385 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 385 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 463 (490)
. |+.||+|.++.+..... ...|.++-.+|++.++++|-.+..+|-+..... ..+..|.|...|.++.|.+.
T Consensus 573 ntvRcWDlregrqlqqhdF---~SQIfSLg~cP~~dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlKFa~c 644 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDF---SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYC 644 (705)
T ss_pred cceeehhhhhhhhhhhhhh---hhhheecccCCCccceeeecccCcEEEEecCCc-----cceeecccccEEEEEEeccc
Confidence 7 99999999877665554 678999999999999999999866666533222 12333446889999999999
Q ss_pred CCeEEEEeCCCcEEEecCCCCC
Q 011256 464 AKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 464 ~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|+++++.|.|..+..|..+-+.
T Consensus 645 GkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred CceeeecCchhhhhhccCcccc
Confidence 9999999999999999987654
No 123
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.2e-25 Score=201.03 Aligned_cols=253 Identities=20% Similarity=0.368 Sum_probs=198.3
Q ss_pred cCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCc-------cceeeeecccccceEEEEEecCC-CEEEEEECCCe
Q 011256 227 GHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN-------YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT 297 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~ 297 (490)
.|.+.|+.+.+.|... ++++++..+.|.|||...... ..+-..+.+|...-.+|+|++.. .++++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5889999999999654 777888899999999865432 12334778999988899999865 58999999999
Q ss_pred EEEEeCCCCeEE--EEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECC--CCceeeeecCCCCCeEEEEEc
Q 011256 298 WCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK--SQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 298 i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s 372 (490)
|++||+...... .........+|...|..++|++ +..+|++++.|+.+.|||+| +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999765441 0111112457889999999999 56889999999999999999 556677778899999999999
Q ss_pred CC-CCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCc-------
Q 011256 373 EN-GYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKAD------- 439 (490)
Q Consensus 373 ~~-~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~------- 439 (490)
|- +..||+|+.|+ |.+||+|+... +..+..+ ...|.++.|+|.. ..|++++.| +.|||+......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H--~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGH--EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCC--CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 94 77888999898 99999998754 4455444 8899999999975 567777777 999999653322
Q ss_pred ---ceEeeeecCCCCCcceEEEEEcCCCCe-EEEEeCCCcEEEecCCC
Q 011256 440 ---WNCIKTFPDLSGTGKATCVKFGPDAKY-IAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 440 ---~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~ 483 (490)
..++....+ |...|..+.|+|...+ |++.+.|+.+.||+...
T Consensus 360 dgppEllF~HgG--H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGG--HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecC--cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 123344444 4888999999997765 77889999999999873
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.1e-25 Score=202.89 Aligned_cols=308 Identities=18% Similarity=0.224 Sum_probs=233.7
Q ss_pred CCCCCChhhhhccccceeeccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC
Q 011256 162 PPALAPIDALERYTQLASHPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG 241 (490)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 241 (490)
-+.++....++.|..... -+.++|++.|.||...|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+
T Consensus 376 iPkLPsp~dLrPFPt~~~-lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 376 IPKLPSPKDLRPFPTRCA-LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLS 453 (733)
T ss_pred cccCCChhhcCCCcceee-eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCC
Confidence 345566666666654433 4788999999999999999999999999999999999999999887 45679999999977
Q ss_pred C--EEEEEeCCCcEEEEe---------------------------------CCCCCc-cceeeeecccccceEEEEEecC
Q 011256 242 D--LFLTGSADKTVRVWQ---------------------------------GSEDGN-YDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 242 ~--~l~s~s~dg~i~iwd---------------------------------~~~~~~-~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
. .|+++-.+ .+.|-+ -..... ..-+...-.|...|..+.||..
T Consensus 454 ~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 454 DLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred CceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 6 44444333 244433 111000 0112233458889999999999
Q ss_pred CCEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCC
Q 011256 286 NKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH 362 (490)
Q Consensus 286 ~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 362 (490)
|.||++...+ ..|.|+++........|.. ..+.+.++.|||...+|++++. ..|+|||+..+..+..+...
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-----skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-----SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhh-----cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC
Confidence 9999998664 4688899877665544432 2267899999999988888876 57999999998888888777
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC-cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeec--
Q 011256 363 VGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV-- 436 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~-- 436 (490)
...|..++.+|+|..|+.|+.++ +..||+.-. ++.+.+..| ...+++++|++.-.++++|+.| +.||.-...
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 78999999999999999999998 999999754 455555555 6789999999999999999998 555542111
Q ss_pred ---CCcceEeeeecCCCC--CcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 437 ---KADWNCIKTFPDLSG--TGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 437 ---~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+...-.++.+.+|.. ...|..+.|+|...+|+++|.||+|++|.
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 112345566666632 24488889999999999999999999983
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=211.12 Aligned_cols=244 Identities=21% Similarity=0.387 Sum_probs=202.4
Q ss_pred cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 011256 227 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 306 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 306 (490)
.|+...+.++|.|+|.+|++++.||.|++|+..... ..-.++..+...|.+++.. +++|++|+.+++|.+|.+.++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 588889999999999999999999999999876652 1122223377788888764 669999999999999999887
Q ss_pred eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-
Q 011256 307 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 385 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~- 385 (490)
..-..+... .-++++++|+.+|.+++.|+.|-.|++.++........+.+|.++|.++.|+|++.+|++.+.||
T Consensus 87 ~~~~iL~Rf-----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 87 EEDTILARF-----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred Cccceeeee-----eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 654333221 16789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCcceeeeecCCC------CCCeeEEEEcCCCCEE-EEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEE
Q 011256 386 VKLWDLRKLKNFRSFESSDS------ETPTNSVDFDHSGSYL-AVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATC 457 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~------~~~i~~i~~s~~~~~l-~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 457 (490)
|+|||+.++.....+..... ...+..++|+|+|..+ +.+..+ |++|+. ..|.....+....+...+.+
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r----~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR----KGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc----CCceeheeecccccccceEE
Confidence 99999998877665544211 3456789999995554 445544 999997 78888888877655666999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 458 VKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 458 ~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+.|+|.|+|||+++.||.|.|||++.
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999999984
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=204.27 Aligned_cols=283 Identities=20% Similarity=0.325 Sum_probs=229.3
Q ss_pred CCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc-
Q 011256 187 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN- 263 (490)
Q Consensus 187 ~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 263 (490)
.+.|++++|.-||+ ++++|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|+.+++|-.+++..
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 48999999999987 67788888999999998877766554 6777777788877777778877777777773220000
Q ss_pred -----------------------------------------------------------------------cce------
Q 011256 264 -----------------------------------------------------------------------YDC------ 266 (490)
Q Consensus 264 -----------------------------------------------------------------------~~~------ 266 (490)
...
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 000
Q ss_pred --------------------------------eeee-----cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 011256 267 --------------------------------KHTL-----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 267 --------------------------------~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
.+.+ +.....+++++.++.|++.+.|...|.|-+|++.+|...
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 0000 011256888999999999999999999999999999888
Q ss_pred EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEE
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL 388 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i 388 (490)
..+.. ...|..+|+.++...-++.+++++.+|.+.+||.+....+..+. -...+.++..+.....++.+.++- |++
T Consensus 484 ~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 484 KSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred ccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 77742 34677999999999999999999999999999999888777776 345788999988888888888885 999
Q ss_pred EECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe
Q 011256 389 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 466 (490)
+|..+.+..+.|..+ ...|+.++|||+|++|++++.| |++||+ .+..++..+.. ..+.+++.|+|+|.+
T Consensus 561 vD~~t~kvvR~f~gh--~nritd~~FS~DgrWlisasmD~tIr~wDl----pt~~lID~~~v---d~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGH--GNRITDMTFSPDGRWLISASMDSTIRTWDL----PTGTLIDGLLV---DSPCTSLSFSPNGDF 631 (910)
T ss_pred EEchhhhhhHHhhcc--ccceeeeEeCCCCcEEEEeecCCcEEEEec----cCcceeeeEec---CCcceeeEECCCCCE
Confidence 999999999999887 7899999999999999999998 999999 45556655544 668899999999999
Q ss_pred EEEEeCC-CcEEEecC
Q 011256 467 IAVGSMD-RNLRVFGL 481 (490)
Q Consensus 467 l~s~~~d-g~v~iw~~ 481 (490)
||+...| ..|++|.=
T Consensus 632 LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSN 647 (910)
T ss_pred EEEEEecCceEEEEEc
Confidence 9999988 67999964
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.1e-24 Score=201.80 Aligned_cols=298 Identities=17% Similarity=0.276 Sum_probs=235.7
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEE-----EEeccCccCEEEEEEeeCCCEEEEEeCCCcE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIV-----TTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 253 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~-----~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 253 (490)
.+.-+|.+-|.++.|+|.+..|++++.|.++.+|...+. --+ ..+.+.........|+|+++.+++-+.-|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 466689999999999999999999999999999986544 222 2233455678899999999999999999999
Q ss_pred EEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCceEEEEcCC
Q 011256 254 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPD 332 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (490)
++|.......+.....+.+|.+.|+.++|+|.|.+++++|.|.+-++|-.- ....-+.+.. ...|...++|+++-+.
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR--PQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR--PQIHGYDLTCLSFVNE 418 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc--cccccccceeeehccC
Confidence 999855555566666778999999999999999999999999999998765 2222333333 3455577899999987
Q ss_pred CcEEEEEcCCCcEEEEECCCC--------------------------------cee------------------------
Q 011256 333 GLILGTGTSEALVKIWDVKSQ--------------------------------ANV------------------------ 356 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~~--------------------------------~~~------------------------ 356 (490)
...|++|.....+++|+.... +..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 778888888889999965210 000
Q ss_pred --------------------eeecCCCCCeEEEEEcCCCCEEEEEeCC-----C-EEEEECCCCcceeeeecCCCCCCee
Q 011256 357 --------------------AKFDGHVGAVTAISFSENGYYLATAAHD-----G-VKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 357 --------------------~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----~-i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
..+.+|...|++++.+|+|+++++++.. . |++|+..+......+..| .-.|+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H--sLTVT 576 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH--SLTVT 576 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc--ceEEE
Confidence 0011788899999999999999998765 1 999999988888777766 77899
Q ss_pred EEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 411 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.++|||||++|++.+.| ..+|................. |..-|.++.|+|++.+++|++.|.+|+||..+.+
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~--HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA--HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccc--cceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999999999 999987433222222222333 4778999999999999999999999999999876
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-23 Score=194.75 Aligned_cols=288 Identities=14% Similarity=0.224 Sum_probs=229.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE-EEEeccC-ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
+..-...+|.|++|+.+.+.||.+-.+|.|-+|++..+=. ...+.++ ...|.+++|++ +..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 3344567999999999999999999999999999877533 3344544 46799999994 5568888999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
+. +....+....+.|++++.+|.+..++.|+.||.+..++...+......... ...+.+.++.|+|++..++.|
T Consensus 99 ~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~---rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 99 TL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM---RQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred cC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc---cccceEEEEEecCCccEEEec
Confidence 87 677777788899999999999999999999998888888888766554422 224789999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeec--------CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCee
Q 011256 340 TSEALVKIWDVKSQANVAKFD--------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~--------~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
+.||.|++||..++..+.... +...-|.++.|..++ .|++|...| |.+||...+..+..+..+ ...|.
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 999999999999987766221 123357788888655 667776667 999999999999988887 78899
Q ss_pred EEEEcCCCCEEEEEecCeEEEEEee--cCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 411 SVDFDHSGSYLAVASADIRVYQVAS--VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~di~v~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+++.++++.++++++-|.+++.+.. ....|........| ...|.+++..++ .|++||.|+.+.+-.+..
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h--~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH--AHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC--cccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999999999955555433 33335444444444 668899998877 899999999998876544
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.7e-25 Score=187.96 Aligned_cols=267 Identities=23% Similarity=0.354 Sum_probs=215.8
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEE
Q 011256 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 281 (490)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 281 (490)
|++.-.++++. ..++..+.||...|+.++.......+.+++.|.+.+||.++++ .|+.++.+|.+.|++|.
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIK 197 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEE
Confidence 44444555532 2456678899999999998777778999999999999999998 89999999999999999
Q ss_pred EecCCCEEEEEECCCeEEEEeC------CCC------------------------------eEEEEeecCCCCCCCCCce
Q 011256 282 VHATNKYFVTASLDNTWCFYDL------SSG------------------------------ICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 282 ~~~~~~~l~s~~~dg~i~iwd~------~~~------------------------------~~~~~~~~~~~~~~~~~v~ 325 (490)
|++.+.++++++.|++-.||.. ... ..+. .......+|...|.
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-vPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-VPLMRLTGHRAVVS 276 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-eeeeeeeccccceE
Confidence 9999999999999999999962 110 0011 11112346778888
Q ss_pred EEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC-cceeeeecC
Q 011256 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL-KNFRSFESS 403 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~ 403 (490)
+..|...|..+++++-|.+..+||+.++..+..+.+|....+.++-+|+.+++++++.|. .++||++.. ..+..|..+
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH 356 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH 356 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999998 999999943 224455554
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 404 DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
...|+++.|..+. .+++|+.| ++||++..... .+.++.. ..+++.++.+..+..++.--++..|++||+
T Consensus 357 --tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs---plATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 357 --TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS---PLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred --ccceeEEEEecCC-ceeecCCCceEEEeeeccccC---cceeeec---CCccceeEeecCCceEEeccCCceEEEEec
Confidence 7889999998654 46677777 99999954333 3344433 668899999988889999988999999999
Q ss_pred CCCCCC
Q 011256 482 PGNDAP 487 (490)
Q Consensus 482 ~~~~~~ 487 (490)
.+...+
T Consensus 428 nG~Rla 433 (481)
T KOG0300|consen 428 NGNRLA 433 (481)
T ss_pred CCCccc
Confidence 987643
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.9e-24 Score=183.31 Aligned_cols=244 Identities=21% Similarity=0.235 Sum_probs=191.3
Q ss_pred CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 011256 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 307 (490)
Q Consensus 228 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 307 (490)
....|+++.|+|.++.|++++.||++++|++... ..... ..|..++.+++|.+ ...+++|+-||.|+.+|++++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 3577999999999898999999999999999874 33333 35889999999985 6789999999999999999987
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-E
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V 386 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i 386 (490)
..... .|..++.|+...+....+++|+-|++|++||.+....+..+.. ...|.++.. .|..|++|+.+. +
T Consensus 87 ~~~ig------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v 157 (323)
T KOG1036|consen 87 EDQIG------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKV 157 (323)
T ss_pred ceeec------cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceE
Confidence 65433 4558999999999888999999999999999998666666653 348888887 567888888886 9
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEE--EEeecCCcceEeeeecCCCC-------CcceEE
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVY--QVASVKADWNCIKTFPDLSG-------TGKATC 457 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~--~~~~~~~~~~~~~~~~~~~~-------~~~v~~ 457 (490)
.+||+|+...............+.++++-|++.-.++++-+++|. .++...........|..|.. --+|++
T Consensus 158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA 237 (323)
T ss_pred EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence 999999987765554444577899999999999899999885543 23222111122223333311 237899
Q ss_pred EEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 458 VKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 458 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
++|+|-...|+|||.||.|.+||+...+
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchh
Confidence 9999999999999999999999997643
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.3e-22 Score=185.11 Aligned_cols=278 Identities=17% Similarity=0.262 Sum_probs=212.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE---eccC-ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT---LSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
.....|....|+|.+.-+++....|.+.+|++..+.+..+ +..+ ...|.|++|.++|+ +++|..+|.|.||+..+
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT 276 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC
Confidence 3456788999999766555555578999999988766543 3332 25699999999998 78999999999999865
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEee------------cC-------------
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS------------DA------------- 315 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~------------- 315 (490)
. +..+....|.+.|.++....+|.++- |+.|+.|..||-.- +.+.... ..
T Consensus 277 ~---~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 277 N---RISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred c---eEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 4 44455558999999999998886555 99999999998321 1111000 00
Q ss_pred -----------CCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 316 -----------GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 316 -----------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
...+|......++.+|+...+++++.|+.+++|+ ..+++.+.. -..+..|+.|+|.| .++.|+..
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeecc
Confidence 0124556778899999999999999999999999 444444433 35689999999999 99999998
Q ss_pred C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 385 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 385 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
| ..+.|..+...+..-.. ..+++.+.|+|+|.+||+|+.| |.||.++.......... .+. ..+|+.+.||
T Consensus 428 G~w~V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~---k~~-gs~ithLDwS 500 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG---KCS-GSPITHLDWS 500 (626)
T ss_pred ceEEEEecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee---eec-CceeEEeeec
Confidence 8 88999998554433333 6899999999999999999999 88888855444333333 332 3799999999
Q ss_pred CCCCeEEEEeCCCcEEEe
Q 011256 462 PDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 462 ~~~~~l~s~~~dg~v~iw 479 (490)
+|+++|.+-+-|-.|..|
T Consensus 501 ~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CCCceEEeccCceEEEEE
Confidence 999999999999999999
No 132
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.6e-25 Score=211.60 Aligned_cols=205 Identities=20% Similarity=0.384 Sum_probs=173.2
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec-CCCEEEEEECCCe
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNT 297 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 297 (490)
.+++..|.||.+.|..+.|+.+ ++|++++.|.+|++|++... .|+..|. |.+.|+|++|+| |.+||++|+-||.
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEEe-cCCeeEEEEecccCCCcEeecccccc
Confidence 4667888999999999999954 57999999999999999876 7888875 999999999999 5689999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC--------CCCCeEEE
Q 011256 298 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--------HVGAVTAI 369 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------~~~~i~~l 369 (490)
++||++...+.+.-.... .-|++++|.|||+..++|+.+|.+++|+....+....+.. ....|+.+
T Consensus 434 vRiWsI~d~~Vv~W~Dl~------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 434 VRLWSISDKKVVDWNDLR------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred eEEeecCcCeeEeehhhh------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 999999988877655433 6799999999999999999999999999988776655421 12279999
Q ss_pred EEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEe
Q 011256 370 SFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 370 ~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 434 (490)
.|.|.. ..+++.+.|. |+|||+++...+..|+.......-....|+.+|++|++++.| +.||+++
T Consensus 508 Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred EecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 999853 3455556665 999999999998888877666666788999999999999988 9999973
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4e-26 Score=216.22 Aligned_cols=254 Identities=23% Similarity=0.433 Sum_probs=219.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceE
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 278 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 278 (490)
..+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+... .++..+.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCcce
Confidence 3344555555567777753 34468888999888777889999999999999988664 56667899999999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeee
Q 011256 279 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK 358 (490)
Q Consensus 279 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 358 (490)
++.|++...+|++|+.+|+|++||++..+.+..+. +|...+.++.|+|-+.+++.|+.|+.+.+||.+...+.+.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-----gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-----GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhhhh-----ccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 99999999999999999999999999988877664 5568899999999999999999999999999999899999
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEee
Q 011256 359 FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
+.+|...+.++.|+|+|+|++.+++|. ++|||+..++....|..+ ...+..+.|+|..-+++.|+.| +++|++
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl-- 225 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDL-- 225 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc--cccccccccCchhhhhccCCCCceeeeecc--
Confidence 999999999999999999999999987 999999999999999876 7789999999999999999999 999998
Q ss_pred cCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 436 VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
..+..+...... ...|.+..|+|++..+++|..+.
T Consensus 226 --etfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 226 --ETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --ceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence 556666555443 67899999999999998886543
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9e-23 Score=192.54 Aligned_cols=208 Identities=18% Similarity=0.229 Sum_probs=171.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
.++......|-+++|+ ++..|++.+.+|.|.-||+.+++....+....+.|++++.+|.++.++.|+.||.+..++...
T Consensus 63 vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p 141 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP 141 (691)
T ss_pred EEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC
Confidence 3566667899999999 566777888899999999999999999999999999999999999999999999777777765
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC---CCCCCCCceEEEEcCCCcEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---TDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 337 (490)
+ .......+...++.|.++.|+|++..++.|+.||.|++||...+..+....... ..+.+.-|.++.|-.+ ..|+
T Consensus 142 ~-~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~ 219 (691)
T KOG2048|consen 142 D-KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIA 219 (691)
T ss_pred c-eEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEE
Confidence 3 334445555667899999999999999999999999999999998777332211 1112234666666644 4789
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEEC
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~ 391 (490)
+|...|+|.+||...+..+..+..|...|.+++..+++.++++++.|+ |..|..
T Consensus 220 sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 220 SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 999999999999999999999999999999999999988999888887 555443
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=8.3e-24 Score=190.76 Aligned_cols=292 Identities=18% Similarity=0.208 Sum_probs=214.5
Q ss_pred cccCCCCCeEEEEecCCC--CEEEEEeCCCcEEEEeCCC----CcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEE
Q 011256 182 LHKTSKPGIVSLDIHYSK--DVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVR 254 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~--~~l~~~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~ 254 (490)
..+-+...|++++|+|.. +++++|...|.|-+||+.+ ...+..+..|+.+|.++.|+|.. ..+++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 445678899999999965 4889999999999999942 23356778899999999999954 5899999999999
Q ss_pred EEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CC
Q 011256 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 333 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 333 (490)
+-|++.. ....+..+......+..+.|+.+...++.++.=|.+.+||++++...... ..-|...|.+++++| ..
T Consensus 261 ~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~----~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 261 LQDFEGN-ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN----LRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeecch-hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh----hhhhhcccceeecCCCCc
Confidence 9999874 23344444434556778888888888888888889999999987653222 123446899999999 45
Q ss_pred cEEEEEcCCCcEEEEECCCCce----eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC----CCcceeeeecCC
Q 011256 334 LILGTGTSEALVKIWDVKSQAN----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR----KLKNFRSFESSD 404 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~----~~~~~~~~~~~~ 404 (490)
.+|++++.|++.+|||++.-.. +.....|...|.+..|||.+-.|++.+.|. |+|||.. ...+...+.-..
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 7899999999999999986422 233355999999999999877788888887 9999984 333444443221
Q ss_pred C---CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEE-EEEcCCCC-eEEEEeCCCcEE
Q 011256 405 S---ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATC-VKFGPDAK-YIAVGSMDRNLR 477 (490)
Q Consensus 405 ~---~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~-~l~s~~~dg~v~ 477 (490)
. --......|+|+..++++|..- |-||+- ...+.+..+.... ...|.+ ..|+|-+. +++.++..|.|+
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~----~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG----NGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcC----CCCEEeeeccCcc-ccccccceeecccccceeccCCccceEE
Confidence 1 1234567899999999999876 888885 4444444443321 224554 48999887 455556778899
Q ss_pred EecCCC
Q 011256 478 VFGLPG 483 (490)
Q Consensus 478 iw~~~~ 483 (490)
||.-+.
T Consensus 491 vft~k~ 496 (498)
T KOG4328|consen 491 VFTNKK 496 (498)
T ss_pred EEecCC
Confidence 986543
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=7.3e-24 Score=198.40 Aligned_cols=286 Identities=18% Similarity=0.257 Sum_probs=204.6
Q ss_pred EEEEecC---CCCEEEEEeCCCcEEEEeCCCCcE------EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 191 VSLDIHY---SKDVIATGGVDTNAVLFDRPSGQI------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 191 ~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
.+..|++ ...+|+.+..||.|.++|...... +.....|...|..+.|.|....|++++.|.++++||+.+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 4456665 345899999999999999765322 3456689999999999996668999999999999999886
Q ss_pred Cccceeee--ecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeE--EEEe--------------------ecCC
Q 011256 262 GNYDCKHT--LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGIC--LTQV--------------------SDAG 316 (490)
Q Consensus 262 ~~~~~~~~--~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~--------------------~~~~ 316 (490)
.+... +.+|.+.|.+++|+|.+ ..|++|+.||.|.|||++-... ...+ ....
T Consensus 133 ---~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 133 ---RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ---eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 44444 78999999999999976 5889999999999999874331 0000 0000
Q ss_pred CCCCCCCceE---EEEcCCCcEEEEEcC-CCcEEEEECCCCceeeee--------cCC---CCCeEEEEEcCCCCEEEEE
Q 011256 317 TDGRPEGYTS---AAFHPDGLILGTGTS-EALVKIWDVKSQANVAKF--------DGH---VGAVTAISFSENGYYLATA 381 (490)
Q Consensus 317 ~~~~~~~v~~---~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~--------~~~---~~~i~~l~~s~~~~~l~~~ 381 (490)
...+...|.+ +.+..|...|++++. |+.|+|||++........ ..| ...++++.....|.+|++.
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 1122233444 556678888888777 999999999976543332 122 3367888888778887777
Q ss_pred eCCC-EEEEECCCCcc--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceE
Q 011256 382 AHDG-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKAT 456 (490)
Q Consensus 382 ~~d~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 456 (490)
+.|+ |++|+++.... ...+...........-..+|++.++++|+.+ ..+|.+.. .+.....+.+| ...|+
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~---~e~~~~~l~Gh--t~eVt 364 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS---PEAPPALLLGH--TREVT 364 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC---ccCChhhhhCc--ceEEE
Confidence 7776 99999987643 3333332222233344568999999999999 77887733 33344445554 77899
Q ss_pred EEEEcCCC-CeEEEEeCCCcEEEecCCCC
Q 011256 457 CVKFGPDA-KYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 457 ~~~~s~~~-~~l~s~~~dg~v~iw~~~~~ 484 (490)
+++|.|.. .-++++++|-.++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998733 23777799999999999654
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=197.05 Aligned_cols=270 Identities=17% Similarity=0.323 Sum_probs=208.0
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.|..++|.|||..|+.+.. ..+.+||.+.|..++++++|.+.|.|++|+.||+.|++|+.|..|.+|+..-.+ +.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG----~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG----IL 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc----ee
Confidence 7899999999997776643 479999999999999999999999999999999999999999999999865432 22
Q ss_pred eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
. ..|.+.|.||.|+|-...+++++-. ..-+|..........- ....+.+++|..||.+|+.|-.+|+|.|-
T Consensus 89 k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~k-------ss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 89 K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHK-------SSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhh-------hheeEEEeeecCCCcEEEEeccCceEEee
Confidence 2 2599999999999999999998763 4677877654433222 12678899999999999999999999998
Q ss_pred ECCCCceeeeec---CCCCCeEEEEEcCCC-----CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 349 DVKSQANVAKFD---GHVGAVTAISFSENG-----YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 349 d~~~~~~~~~~~---~~~~~i~~l~~s~~~-----~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
+- +++....+. +.+.+|.+++|+|+. ..+++..-+. +.+|.+.. +.+..-... .....|+.+.++|.
T Consensus 160 Nk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L--~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 160 NK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRAL--NFDPCCISYFTNGE 235 (1081)
T ss_pred cC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccC--CCCchhheeccCCc
Confidence 64 444433443 467799999999973 3444444443 55665543 222111111 44567899999999
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
|+..|+.+ +++|.- .+..+.+.... ...|+.++..|++++++.|+.||+|..|++-.
T Consensus 236 y~LiGGsdk~L~~fTR-----~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTR-----DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCCCceEEEee-----cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999998 777763 45555555543 67899999999999999999999999998743
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-24 Score=207.18 Aligned_cols=229 Identities=19% Similarity=0.355 Sum_probs=183.2
Q ss_pred CeEEEEecC-CCCEEEEEeCCCcEEEEeCCC---CcEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 189 GIVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 189 ~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
.+..+.|+. ..++|||++..|.|.+||+.. .+.+..|..|...|+++.|++ ...+|++||.||+|++||+...
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-- 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-- 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--
Confidence 345677774 467999999999999999987 566778899999999999988 4568999999999999999886
Q ss_pred cceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
....++.+....|..+.|+|. +.+|+++...|.+.+||++........ ...|.++|.|+.|+|++.+||+|+.|
T Consensus 167 -~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k----~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 167 -KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK----LTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred -cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHH----hhcccCceEEEeecCCCceeeecCCC
Confidence 566777788899999999985 578999999999999999876532221 34677999999999999999999999
Q ss_pred CcEEEEECCCCce--eeeecCCCCCeEEEEEcCC-CCEEEEEeCC--C-EEEEECCCCc-ceeeeecCCCCCCeeEEEEc
Q 011256 343 ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSEN-GYYLATAAHD--G-VKLWDLRKLK-NFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 343 g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d--~-i~iwd~~~~~-~~~~~~~~~~~~~i~~i~~s 415 (490)
+.|+|||+.+++. +.++. ...++.++.|-|. .+.|++++.- . |+|||++..- +...+..+ ...++.++|.
T Consensus 242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~ 318 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWD 318 (839)
T ss_pred ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--Cccccceecc
Confidence 9999999986543 33333 3468999999997 4567777654 3 9999998654 34555554 7788999996
Q ss_pred C-CCCEEEEEecC
Q 011256 416 H-SGSYLAVASAD 427 (490)
Q Consensus 416 ~-~~~~l~~~~~d 427 (490)
. +...+.+++.|
T Consensus 319 ~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 319 SGDRINLWSCSKD 331 (839)
T ss_pred CCCceeeEeecCc
Confidence 5 34556666666
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=9.1e-24 Score=199.90 Aligned_cols=245 Identities=19% Similarity=0.297 Sum_probs=208.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEee---CCCEEEEEeCCCcEEEEeCCCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT---EGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
.+-+|.+++++|+|++||+|..-|+++||++..-+....+..|...|.|+.|+. ..++|++++.|..|+|||+..
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-- 535 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-- 535 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--
Confidence 456899999999999999999999999999999998999999999999999975 346899999999999999864
Q ss_pred ccceeeeecccccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
++..+.++.+|...|+++.|.-.| ..+++++.|..|.+--.........+...........++.+++.|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 568889999999999999998777 689999999877653332222222222222222336789999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecC---CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC
Q 011256 341 SEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
.|..|+|||+.+++.++.|++ |.+..-.+...|.|.|+++...|. +.+||+.+++++.....| ...|+.+.|.+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH--sE~VTG~kF~n 693 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH--SEAVTGVKFLN 693 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc--chheeeeeecc
Confidence 999999999999999999975 667888899999999999999997 999999999999888776 77899999999
Q ss_pred CCCEEEEEecC--eEEEEEe
Q 011256 417 SGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~ 434 (490)
|.+.|++.+.| |.||.+.
T Consensus 694 DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchhheeecCCceEEEEECc
Confidence 99999999999 8888874
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=183.91 Aligned_cols=245 Identities=18% Similarity=0.311 Sum_probs=184.0
Q ss_pred CCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCC----------------CcEEEEeccCccCEEEEEEeeCC-CEEE
Q 011256 185 TSKPGIVSLDIHYSKD--VIATGGVDTNAVLFDRPS----------------GQIVTTLSGHSKKVTSVKFVTEG-DLFL 245 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~--~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~l~~~~~~-~~l~ 245 (490)
.|.+.|+-+..++-++ +.++-+..|.|.||++.. .+.+.++.+|...=..++|||-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4566777777776543 666667889999999642 35677888999999999999932 2488
Q ss_pred EEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCc
Q 011256 246 TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 246 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 324 (490)
+|..-+.|++|...++.-..-...+.+|+..|..|+|+|.. ..|++||.||+|+|||++.+.....+. ...|...|
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~---~kAh~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS---TKAHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE---eeccCCce
Confidence 88888999999988843222334566899999999999975 689999999999999999984443333 24566899
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECCC---CceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcc---
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN--- 396 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~--- 396 (490)
+.+.|+.+..+|++|+.||+++|||+|+ ++++..|+-|..+|++|.|+|. ...|++++.|. |.|||+....-
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 9999999888999999999999999985 5788999999999999999996 45566666665 99999864221
Q ss_pred -------------eeeeecCCCCCCeeEEEEcCCCC-EEEEEecC-eEEEE
Q 011256 397 -------------FRSFESSDSETPTNSVDFDHSGS-YLAVASAD-IRVYQ 432 (490)
Q Consensus 397 -------------~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d-i~v~~ 432 (490)
.+.+-.|.....+..+.|++.-. ++++.+.+ +.||.
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 11112222345677788887643 44444444 77765
No 141
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3e-23 Score=196.11 Aligned_cols=231 Identities=24% Similarity=0.382 Sum_probs=197.0
Q ss_pred cCCCCCeEE-EEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 184 KTSKPGIVS-LDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 184 ~~h~~~I~~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
.+|.+-|.+ +++-+ ++..+++|+.|++|.+|.+....++.++.+|...|.|+....++. +++||.|.++++|-..
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-- 130 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-- 130 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--
Confidence 345566666 77775 555799999999999999999999999999999999999877776 9999999999999764
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
++...+.+|...|+++...|.+ .+++||.|.+|++|.- ++.+..+. +|...|+.+++-+++. |++++.
T Consensus 131 ---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-----gHtD~VRgL~vl~~~~-flScsN 198 (745)
T KOG0301|consen 131 ---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-----GHTDCVRGLAVLDDSH-FLSCSN 198 (745)
T ss_pred ---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-----cchhheeeeEEecCCC-eEeecC
Confidence 4666689999999999999888 8999999999999985 55555554 6779999999998765 677889
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
||.|++|++ +|.++..+.+|...|++++...++..++++++|+ ++||+.. .+.+.+..+ ...++++.+-++|..
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgDI 273 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGDI 273 (745)
T ss_pred CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCCE
Confidence 999999999 8899999999999999999888899999999998 9999877 666777665 557899999888887
Q ss_pred EEEEecC-eEEEEEe
Q 011256 421 LAVASAD-IRVYQVA 434 (490)
Q Consensus 421 l~~~~~d-i~v~~~~ 434 (490)
++.||.. ++||..+
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 6655555 8998875
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.8e-21 Score=183.06 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=187.9
Q ss_pred CeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCccce
Q 011256 189 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 189 ~I~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~ 266 (490)
.+.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.|++||+.+. ..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---~~ 107 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETR---KV 107 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCC---eE
Confidence 35789999999876 5677889999999999888877765544 5678999999976554 56899999999875 44
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCC-eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE-cCCCc
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEAL 344 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~ 344 (490)
+..+. +...+.+++|+|++.++++++.++ .+.+||..++......... ..+.+++|+|++.+|+++ ..++.
T Consensus 108 ~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 108 LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------QRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC------CCccEEEECCCCCEEEEEcCCCCE
Confidence 44443 233568899999999999988775 5677899888776554321 345779999999887654 46899
Q ss_pred EEEEECCCCceeeeecCCC-----C--CeEEEEEcCCCCEEEEEe-CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 345 VKIWDVKSQANVAKFDGHV-----G--AVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~-----~--~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
|++||+.+++.+..+..+. . ....++|+|++++++++. .++ +.+||+++++....+.. ...+.++.|+
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~ 257 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFT 257 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEEC
Confidence 9999999988776654221 1 235688999999865543 334 99999998877655433 3468899999
Q ss_pred CCCCEEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 416 HSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 416 ~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
|+|++|++++. + +.||++ .....+..+.. ....+.++++|
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~----~~~~~~~~~~~---~~~~~~~~~~~ 300 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDV----AALKVIKSIKV---GRLPWGVVVRP 300 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEEC----CCCcEEEEEEc---ccccceeEeCC
Confidence 99999988743 3 999998 45666666653 34457777764
No 143
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=1.2e-22 Score=180.73 Aligned_cols=285 Identities=19% Similarity=0.322 Sum_probs=211.1
Q ss_pred CCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCC---------cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 187 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 187 ~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
..+|.++.|.++.. .+++|+.|..|++|.+..+ +....+..|...|+++.|+|+|++|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999766 9999999999999976532 2345677899999999999999999999999999999
Q ss_pred eCC--------C-----CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 011256 257 QGS--------E-----DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 323 (490)
Q Consensus 257 d~~--------~-----~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 323 (490)
... + ...+.....+.+|...|..++|+|++.++++++.|..+++||+..|.....+. +|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-----dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-----DHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-----ccccc
Confidence 765 2 23356667788999999999999999999999999999999999999887765 45578
Q ss_pred ceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec-------------------CC----CCCeEEEEEcCCCCEEEE
Q 011256 324 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-------------------GH----VGAVTAISFSENGYYLAT 380 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------------~~----~~~i~~l~~s~~~~~l~~ 380 (490)
+..++|.|-++++++-+.|...+.+++.....+.... -| ......++|+|+|.+|++
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999999999999998888877777765433222111 01 123456789999999987
Q ss_pred EeCC----C------EEEEECCCC-cceeeeecCCCCCCeeEEEEc------------------CCCCEEEEEecC-eEE
Q 011256 381 AAHD----G------VKLWDLRKL-KNFRSFESSDSETPTNSVDFD------------------HSGSYLAVASAD-IRV 430 (490)
Q Consensus 381 ~~~d----~------i~iwd~~~~-~~~~~~~~~~~~~~i~~i~~s------------------~~~~~l~~~~~d-i~v 430 (490)
...- + .++|+-... ++...+... ..+...+.|+ |.+-.+++++.+ +.|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 6431 1 345543322 122222222 2333333333 345567888888 999
Q ss_pred EEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 431 YQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
|+. ....++...... |...|+.++|++||.+|+..+.||...+-.++.
T Consensus 326 ydt----q~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 326 YDT----QTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ecc----ccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 986 333333333322 477899999999999999999999877766654
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-22 Score=172.71 Aligned_cols=207 Identities=25% Similarity=0.425 Sum_probs=168.5
Q ss_pred cCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCcc---------cee---eeecccccceEEEEEec-CCCEEEEE
Q 011256 227 GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNY---------DCK---HTLKDHTAEVQAVTVHA-TNKYFVTA 292 (490)
Q Consensus 227 ~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~---~~~~~h~~~v~~l~~~~-~~~~l~s~ 292 (490)
.|.+.|+++...+ .|+++++|+.||.|.+||++....+ .|+ ..-.+|.-.|..+.|-| |...|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4778899999877 7889999999999999998764321 111 11236888999999998 45688899
Q ss_pred ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC---CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEE
Q 011256 293 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI 369 (490)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l 369 (490)
+.|.++++||.++.+....+... +.|++-+++|- -.++++|..+-.|++.|+.+|..-+++.+|.+.|.++
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred cccceEEEeecccceeeEEeecC------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 99999999999999988888754 67888888883 4588999999999999999999999999999999999
Q ss_pred EEcCCC-CEEEEEeCCC-EEEEECCCC-cceeeeecC------------CCCCCeeEEEEcCCCCEEEEEecC--eEEEE
Q 011256 370 SFSENG-YYLATAAHDG-VKLWDLRKL-KNFRSFESS------------DSETPTNSVDFDHSGSYLAVASAD--IRVYQ 432 (490)
Q Consensus 370 ~~s~~~-~~l~~~~~d~-i~iwd~~~~-~~~~~~~~~------------~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~ 432 (490)
.|+|.. ..|++|+.|| |++||+|.. .++..+..+ .+.+.++.++|+.++.++++.+.| +++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 999975 5578889998 999999875 333333322 235678999999999999998887 99999
Q ss_pred EeecCCc
Q 011256 433 VASVKAD 439 (490)
Q Consensus 433 ~~~~~~~ 439 (490)
...+..+
T Consensus 275 ~~~G~nt 281 (397)
T KOG4283|consen 275 MESGRNT 281 (397)
T ss_pred cccCccc
Confidence 8655443
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=9.5e-23 Score=176.66 Aligned_cols=291 Identities=14% Similarity=0.292 Sum_probs=216.9
Q ss_pred ccccCCCCCeEEEEecC-----CCCEEEEEeCCCcEEEEeCCCC---cEEEEec--cCccCEEEEEEeeC----CCEEEE
Q 011256 181 PLHKTSKPGIVSLDIHY-----SKDVIATGGVDTNAVLFDRPSG---QIVTTLS--GHSKKVTSVKFVTE----GDLFLT 246 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~~----~~~l~s 246 (490)
.+...|+.+|..++|++ ....+++.|.+ .+.+|..... ..++.+. .|......++|+-+ ..+++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 46778888999999985 23466666644 6888876543 2333332 36777888999763 338999
Q ss_pred EeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 247 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 247 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
|+.-|.|+|.|+... ++...+.+|...|+.|.++|.. ++++++|.|..|++|++.+..++..+.. ..+|...|.
T Consensus 111 ~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVL 185 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVL 185 (385)
T ss_pred ecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEE
Confidence 999999999999887 7888899999999999999976 7999999999999999999999988864 668999999
Q ss_pred EEEEcCCCcEEEEEcCCCcEEEEECCCCce------ee----------------------eecCCCCCeEEEEEcCCCCE
Q 011256 326 SAAFHPDGLILGTGTSEALVKIWDVKSQAN------VA----------------------KFDGHVGAVTAISFSENGYY 377 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~------~~----------------------~~~~~~~~i~~l~~s~~~~~ 377 (490)
++.|+++|.+|++++.|..|++|++...+. .. +-..|...|.|+.|- |.+
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ 263 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF 263 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence 999999999999999999999999974211 10 112355566666663 578
Q ss_pred EEEEeCCC-EEEEECCC-Ccc-------------eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcc
Q 011256 378 LATAAHDG-VKLWDLRK-LKN-------------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 440 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~-~~~-------------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~ 440 (490)
+++-+.++ |..|..-+ .+. +..+............+|+|-++.|+.|... +.+|+++.....
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~- 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP- 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-
Confidence 88877777 99997722 111 2223333212223445667888999999887 888888654332
Q ss_pred eEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 441 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 441 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
...++........|...+|+.||.+|+..++||.|.-||.
T Consensus 343 -~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 343 -KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 2222222233678999999999999999999999998875
No 146
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=177.24 Aligned_cols=278 Identities=15% Similarity=0.253 Sum_probs=202.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccc-cc
Q 011256 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AE 276 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~ 276 (490)
..+|++.+.|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||+..... .....+..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhheeccCCCCCc
Confidence 5788999999999999999999999999999999999977 456899999999999999988543 2333344454 56
Q ss_pred eEEEEEecCCCEEEEEEC----CCeEEEEeCCCCeE-EEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEEC
Q 011256 277 VQAVTVHATNKYFVTASL----DNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDV 350 (490)
Q Consensus 277 v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~ 350 (490)
..|++..-.++.+++|.. +-.+.+||++..+. +..+ ...|...|+++.|+| +.++|++|+.||.|.+||+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~----~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL----NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh----hhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 778877767788888753 67899999998776 4444 446779999999999 5689999999999999999
Q ss_pred CCCc---eeeeecCCCCCeEEEEEcCCC--CEEEEEeCCCEEEEECCCCcceeeeecCCCC----------CCeeEEEEc
Q 011256 351 KSQA---NVAKFDGHVGAVTAISFSENG--YYLATAAHDGVKLWDLRKLKNFRSFESSDSE----------TPTNSVDFD 415 (490)
Q Consensus 351 ~~~~---~~~~~~~~~~~i~~l~~s~~~--~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~----------~~i~~i~~s 415 (490)
+... .+...-.+...|.++.|..++ ++++.....+..+|++..+.+...+...... ..+......
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 7642 222223467789999999988 5444444556999999988765444433110 111111112
Q ss_pred CCCCEEEEEecC---eEEEEEe--ecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 416 HSGSYLAVASAD---IRVYQVA--SVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 416 ~~~~~l~~~~~d---i~v~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.++..++.++.+ +.++-+. ...........+.++ |..-|.++.|...+.++.+||.||.|.+|..++
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 345566666554 6666553 222233334444443 466788899998999999999999999999643
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=183.16 Aligned_cols=248 Identities=22% Similarity=0.330 Sum_probs=202.6
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCe
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI 307 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~ 307 (490)
.+.|+++.|+|...+|++|+.||+++||.++...+ ..+..+.--..+|.+..|+|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46799999999999999999999999999987544 35555656678999999999998 89999999999999999887
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-E
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-V 386 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i 386 (490)
....-...+.. ...+....+++++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.+++.|++++.+| |
T Consensus 292 ~~k~~~~~g~e--~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 292 VTKLKPPYGVE--EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred cccccCCCCcc--cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 65443322211 2467888999999999999999999999999999998887 467899999999999999998888 9
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeec--CCcceEeeeecCCCCCcceEEEEEcC
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV--KADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
.+||++...++..+...+ .-.-++++.+++|.|||+|+.. +.||+.... .....++..+... ...|+++.|++
T Consensus 369 ~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~Itsl~Fn~ 445 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAITSLQFNH 445 (514)
T ss_pred EEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heeeeeeeeCc
Confidence 999999999999888754 2344778889999999999998 999996542 2233444554443 66899999999
Q ss_pred CCCeEEEEe--CCCcEEEecCCC
Q 011256 463 DAKYIAVGS--MDRNLRVFGLPG 483 (490)
Q Consensus 463 ~~~~l~s~~--~dg~v~iw~~~~ 483 (490)
|++.|+.++ .+..+++-.+++
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred chhhhhhhhhccccceEEEeccc
Confidence 999988776 456788877765
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=182.12 Aligned_cols=235 Identities=20% Similarity=0.289 Sum_probs=180.8
Q ss_pred EEEEecC-------CCCEEEEEeCCCcEEEEeCCCCcE---EE------------------EeccCccCEEEEEEeeC-C
Q 011256 191 VSLDIHY-------SKDVIATGGVDTNAVLFDRPSGQI---VT------------------TLSGHSKKVTSVKFVTE-G 241 (490)
Q Consensus 191 ~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~---~~------------------~~~~h~~~v~~l~~~~~-~ 241 (490)
.|+.|.. .|+++|.|+.|..|-|||+.-... .. .-.+|+..|.++.|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 357999999999999999752110 01 12379999999999774 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCC
Q 011256 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDG 319 (490)
Q Consensus 242 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 319 (490)
+.||+||.|.+|++||+.++ ++..++..|.+.|.++.|+|.. .+|++|+.|+++.+.|.+.... -..+..
T Consensus 257 nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----- 328 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----- 328 (463)
T ss_pred eeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-----
Confidence 48999999999999999998 8888999999999999999965 6899999999999999984221 112221
Q ss_pred CCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCc
Q 011256 320 RPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLK 395 (490)
Q Consensus 320 ~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~ 395 (490)
.+.|-.++|+|. ...+++++.||+|+-+|+|+. +++.+++.|.++|.+|+++.. ..++++++.++ |++|++....
T Consensus 329 -~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 329 -DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred -ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 167889999994 478888999999999999975 899999999999999999885 56788888888 9999987654
Q ss_pred ceeeeecCCCCCCeeEEEEcCCCCE-EEEEecC--eEEEEEe
Q 011256 396 NFRSFESSDSETPTNSVDFDHSGSY-LAVASAD--IRVYQVA 434 (490)
Q Consensus 396 ~~~~~~~~~~~~~i~~i~~s~~~~~-l~~~~~d--i~v~~~~ 434 (490)
..........-+...|++++|+-.+ ++.|+.. ++||++.
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 4222221111334677788887655 4455555 9999983
No 149
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=4e-22 Score=188.52 Aligned_cols=298 Identities=22% Similarity=0.347 Sum_probs=225.2
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
.++..+|.++|..++|+|.|.+|++.+.|.+-++|-.... ..+..-+-|...++|++|-+....|++|.....+|+
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 3567899999999999999999999999999999875411 223344568888999999886667899999999999
Q ss_pred EeCC-------------------------------------------CCC------------------------------
Q 011256 256 WQGS-------------------------------------------EDG------------------------------ 262 (490)
Q Consensus 256 wd~~-------------------------------------------~~~------------------------------ 262 (490)
|+.. +++
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 9711 000
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCC-----eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.+..++.+.+|...|.+++.+|+++++++++... .|++|+..+-.....+. +|.-.|+.++|+|||++|+
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEE
Confidence 0122344678999999999999999999998753 58999988766655443 5678899999999999999
Q ss_pred EEcCCCcEEEEECCCCc----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC--cceeeeecCCCCCCee
Q 011256 338 TGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL--KNFRSFESSDSETPTN 410 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~--~~~~~~~~~~~~~~i~ 410 (490)
+.+.|.++.+|...... .....+.|..-|..+.|+|++.+++|+|.|. |++|..... +.+..+........++
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVT 668 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVT 668 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCcee
Confidence 99999999999874431 1223567999999999999999999999998 999999887 6666655555578899
Q ss_pred EEEEcCC-----CCEEEEEecC--eEEEEEeecC-----CcceEeeee-cCCCCCcceEEEEEcCC----------CCeE
Q 011256 411 SVDFDHS-----GSYLAVASAD--IRVYQVASVK-----ADWNCIKTF-PDLSGTGKATCVKFGPD----------AKYI 467 (490)
Q Consensus 411 ~i~~s~~-----~~~l~~~~~d--i~v~~~~~~~-----~~~~~~~~~-~~~~~~~~v~~~~~s~~----------~~~l 467 (490)
.+++.|- +..+++|-.. |.+|...... ..+...... ....+...|+.+.|.|. ...|
T Consensus 669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEE
Confidence 9998763 2356666665 7777764111 111111111 12234678999999974 2347
Q ss_pred EEEeCCCcEEEecCC
Q 011256 468 AVGSMDRNLRVFGLP 482 (490)
Q Consensus 468 ~s~~~dg~v~iw~~~ 482 (490)
++|++|..++|+++.
T Consensus 749 a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 749 AVGGDDESVRIFNVD 763 (764)
T ss_pred eeecccceeEEeecc
Confidence 999999999999875
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=169.75 Aligned_cols=284 Identities=19% Similarity=0.288 Sum_probs=206.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE------------EEEec-cCccCEEEEEEe-------eCCCEEEEEeC
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI------------VTTLS-GHSKKVTSVKFV-------TEGDLFLTGSA 249 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~-~h~~~v~~l~~~-------~~~~~l~s~s~ 249 (490)
...+.|+|||..|++-+.|..+.+|++...-. ..++. .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 34688999999999999999999998753210 01111 123557788885 56678999999
Q ss_pred CCcEEEEeCCCCCccceeeeecccccc---eEEEEEecCCCEEEEEECCCeEEEEeC-CCCeEEEEee--cCCCCCCCCC
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAE---VQAVTVHATNKYFVTASLDNTWCFYDL-SSGICLTQVS--DAGTDGRPEG 323 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~--~~~~~~~~~~ 323 (490)
+.-|++||.-++. .++......|... ..+++|+|||.+|++| ....|++||+ +.|....... .....+..+-
T Consensus 132 ~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999998863 2333333345544 4689999999999876 5579999999 5554322221 1123344577
Q ss_pred ceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcc-eee
Q 011256 324 YTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN-FRS 399 (490)
Q Consensus 324 v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~-~~~ 399 (490)
+.|++|+| +...+++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|++|.... |.+||+|.... +..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 89999999 556999999999999999888899999999999999999999999999998764 99999997543 344
Q ss_pred eecCCC-CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 400 FESSDS-ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 400 ~~~~~~-~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
+..+.. ...-.-+...|++++|++|+.+ |++|++... .+.+..+..+ ...++.++++|--.++++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~---gn~~sv~~~~--sd~vNgvslnP~mpilatssGq--- 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL---GNEVSVTGNY--SDTVNGVSLNPIMPILATSSGQ--- 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC---CCcccccccc--cccccceecCcccceeeeccCc---
Confidence 443321 2222334557899999999888 999998432 3334444443 7789999999998888887643
Q ss_pred EEecCCC
Q 011256 477 RVFGLPG 483 (490)
Q Consensus 477 ~iw~~~~ 483 (490)
++|..+.
T Consensus 362 r~f~~~~ 368 (406)
T KOG2919|consen 362 RIFKYPK 368 (406)
T ss_pred eeecCCC
Confidence 4454443
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=3e-22 Score=182.30 Aligned_cols=265 Identities=19% Similarity=0.325 Sum_probs=202.4
Q ss_pred ccCCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCC--CcE--EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 183 HKTSKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPS--GQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~-l~~~~~dg~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
+....+++.++.|+....+ +++.+.|..+++|.-.. ++. +....+. .-.|++......++++|+..+.|+|||
T Consensus 30 ~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 30 HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWD 107 (673)
T ss_pred cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehh
Confidence 3334557999999976642 23345678888986432 222 2222322 334444444458999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEE
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LIL 336 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 336 (490)
+... .+.+.+.+|...|+++.++....||++++..|.|.|..+.++.....+.... ...|.-+.|+|.. .+|
T Consensus 108 l~~k---l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s----gqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 108 LRAK---LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS----GQSVRLLRYSPSKRFLL 180 (673)
T ss_pred hHHH---HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC----CCeEEEeecccccceee
Confidence 9864 6778889999999999999999999999999999999999988777775431 2456789999965 567
Q ss_pred EEEcCCCcEEEEECCCCceeeee-cCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEE
Q 011256 337 GTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 413 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 413 (490)
.+++.+|.|.+||+....++..+ +.|..+...|+|+|. ..+|++.+.|. |.+||.+.......+.. ..+...++
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstva 257 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVA 257 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceee
Confidence 77899999999999888777766 568999999999995 56778888887 99999998777776665 67899999
Q ss_pred EcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 414 FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 414 ~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
|.++|.+|+.|+.. +..||+.. ...++.....| ...|++++|-|..
T Consensus 258 f~~~G~~L~aG~s~G~~i~YD~R~---~k~Pv~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKGELIAYDMRS---TKAPVAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred ecCCceEEEeecCCceEEEEeccc---CCCCceEeeec--ccceeEEEeeecc
Confidence 99999999999998 55555532 33455555554 6679999997754
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.7e-22 Score=170.89 Aligned_cols=244 Identities=18% Similarity=0.255 Sum_probs=183.2
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE
Q 011256 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 311 (490)
-.|+.|++.|.+||+|+.||.|.|||+.+- .....+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 689999999999999999999999999886 56677889999999999999999999999999999999999999988
Q ss_pred eecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCceeeeecCC----CCCeEEEEEcCCCCEEEEEeCCC-
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGH----VGAVTAISFSENGYYLATAAHDG- 385 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~l~~~~~d~- 385 (490)
+... ++|..+.|+|.. +.+++.-.+..-.+.++..++...--... ...-.+..|.+.|+++++|...|
T Consensus 103 irf~------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 103 IRFD------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred EEcc------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 8754 789999999943 33333333333455555443221111111 11223446889999999999999
Q ss_pred EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecC---Ccce--EeeeecCCCCCcceEEE
Q 011256 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK---ADWN--CIKTFPDLSGTGKATCV 458 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~---~~~~--~~~~~~~~~~~~~v~~~ 458 (490)
+.++|..+.+++..+.... ...|..+.++..|++|+..+.| |+.|++..-. .... ....+...-....-.++
T Consensus 177 llv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 9999999999988887653 3679999999999999999999 9999874211 1111 11222211123344688
Q ss_pred EEcCCCCeEEEEeC-CCcEEEecCCCCC
Q 011256 459 KFGPDAKYIAVGSM-DRNLRVFGLPGND 485 (490)
Q Consensus 459 ~~s~~~~~l~s~~~-dg~v~iw~~~~~~ 485 (490)
+|+.+|.|++.|+. -..++||.-..+.
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~Gs 283 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGS 283 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcc
Confidence 99999999988764 3469999876553
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=6.1e-22 Score=178.83 Aligned_cols=268 Identities=22% Similarity=0.319 Sum_probs=202.2
Q ss_pred EeCCCCcEEEEeccCccCEEEEEEeeCC--CEEEEEeCCCcEEEEeCCCC-CccceeeeecccccceEEEEEecCC-CEE
Q 011256 214 FDRPSGQIVTTLSGHSKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATN-KYF 289 (490)
Q Consensus 214 wd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~-~~l 289 (490)
+|+.+-.....+..+.+.|++++|+|.. +++++|..-|+|-+||+.+. ....-+..+..|..+|.+|.|+|.+ ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444444455666788999999999954 48999999999999999532 2335566778899999999999966 689
Q ss_pred EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce-eeeecCCCCCeEE
Q 011256 290 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTA 368 (490)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~ 368 (490)
++.+.||+|++-|++.+..-..+... .....+..+.|+.+...++.|+.=|...+||++++.. ...+.-|...|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence 99999999999999877543333321 1225677888888777777777777999999998754 5566778889999
Q ss_pred EEEcCC-CCEEEEEeCCC-EEEEECCCCcceee--eecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceE
Q 011256 369 ISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNC 442 (490)
Q Consensus 369 l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~--~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~ 442 (490)
++++|- ..+|++++.|+ .+|||+|....... +....|...|.+..|||++-.|++.+.| |+||+..-.......
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 999995 67889999997 99999998765553 5666678899999999998888888888 999997311111222
Q ss_pred eeeecCCCC--Cc--ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 443 IKTFPDLSG--TG--KATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 443 ~~~~~~~~~--~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...+ .|.+ .. ......|.|+..++++|..-..|-||+-.++.
T Consensus 408 ~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 408 LGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 2222 1211 11 23456899999999999999999999987765
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.8e-21 Score=175.26 Aligned_cols=283 Identities=17% Similarity=0.291 Sum_probs=202.9
Q ss_pred eEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEeccCc----cCEEEEEEee-------CCCEEEEEeCCCcE
Q 011256 190 IVSLDIHYSKDVIATGGVDT-----NAVLFDRPSGQIVTTLSGHS----KKVTSVKFVT-------EGDLFLTGSADKTV 253 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~-------~~~~l~s~s~dg~i 253 (490)
.-.+.+-|+.++|+++-.+. .|+||+-..... +-.|. ..-.|++|.. .|+++|.|+.|..|
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL---YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcce---eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 34566678777777775432 256666443222 11122 2335777743 36799999999999
Q ss_pred EEEeCCCCCccceeee------------------ecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeec
Q 011256 254 RVWQGSEDGNYDCKHT------------------LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSD 314 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 314 (490)
.|||+.-.....+..+ -.+|+..|.+++|+..- +.|++||.|.+|++||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 9999764322222222 23688899999998654 6899999999999999999999888863
Q ss_pred CCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEEC
Q 011256 315 AGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDL 391 (490)
Q Consensus 315 ~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~ 391 (490)
|...|.++.|+| ...+|++|+.|++|.+.|.|........-...+.|-.++|.|.. ..++++.+|| |+-+|+
T Consensus 285 -----~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 285 -----HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred -----cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 348899999999 56899999999999999999533322222245789999999974 4566667778 999999
Q ss_pred CCC-cceeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC-e
Q 011256 392 RKL-KNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-Y 466 (490)
Q Consensus 392 ~~~-~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 466 (490)
|+. +++.++..| ..+|.+++++..- .++++++.+ +++|++..........+.+. .+...|+++.|+-. .
T Consensus 360 R~~~~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~----~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 360 RNPGKPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK----LGRLHCFALDPDVAFT 433 (463)
T ss_pred CCCCCceeEEEec--cCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc----ccceeecccCCCcceE
Confidence 987 777777776 7799999998865 456677777 99999965433222222222 33467788888654 4
Q ss_pred EEEEeCCCcEEEecCCCCCC
Q 011256 467 IAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 467 l~s~~~dg~v~iw~~~~~~~ 486 (490)
++.||..+.++|||+..+.+
T Consensus 434 la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred EEecCccceEEEeecccChh
Confidence 77888888999999977643
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=4.2e-22 Score=172.69 Aligned_cols=245 Identities=21% Similarity=0.323 Sum_probs=188.7
Q ss_pred CCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCC
Q 011256 185 TSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 185 ~h~~~I~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~ 259 (490)
.|......++|+.+ ..++|+||.-|.|+|.|+.+++....+.+|...|+.+.|+|+. ++++++|.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46677888888864 3489999999999999999999999999999999999999965 689999999999999999
Q ss_pred CCCccceeeee---cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC---------------------
Q 011256 260 EDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA--------------------- 315 (490)
Q Consensus 260 ~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------- 315 (490)
+. .|+..+ .+|.+.|.++.|+++|.+|++++.|.+|++|++...+....+...
T Consensus 167 ~~---~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TD---VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CC---eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 97 666655 479999999999999999999999999999999843321111100
Q ss_pred --CCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC-CCc-------------eeeeecCCCCCeEEEE--EcCCCCE
Q 011256 316 --GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-SQA-------------NVAKFDGHVGAVTAIS--FSENGYY 377 (490)
Q Consensus 316 --~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~i~~l~--~s~~~~~ 377 (490)
....|...|-|+.|- |.++++-+-++.|..|... -++ .+..+.-....|.-+. |.|-+++
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 122344555555554 5688888888999999872 111 1223333444566554 4556889
Q ss_pred EEEEeCCC-EEEEECCCCcce--eeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEe
Q 011256 378 LATAAHDG-VKLWDLRKLKNF--RSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 434 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~~~~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 434 (490)
|+.|...| |.+||++...+. .++........|...+|+.+|.+|+..+.+..||.++
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 99999998 999999987653 2333333467899999999999999999998888764
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=170.52 Aligned_cols=249 Identities=18% Similarity=0.346 Sum_probs=187.6
Q ss_pred ccCccCEEEEEEeeCCC--EEEEEeCCCcEEEEeCCCC-------------CccceeeeecccccceEEEEEecCC-CEE
Q 011256 226 SGHSKKVTSVKFVTEGD--LFLTGSADKTVRVWQGSED-------------GNYDCKHTLKDHTAEVQAVTVHATN-KYF 289 (490)
Q Consensus 226 ~~h~~~v~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~~~~~-~~l 289 (490)
..|.+.++.+.-.+-++ +.++-+..|.|+||++... ...+++.++.+|...=++|+|+|-. ..+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35777888888777554 6666778999999996431 2346788899999999999999943 458
Q ss_pred EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCC
Q 011256 290 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGA 365 (490)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~ 365 (490)
++|..-+.|++|...++....... .+.+|...|-.++|+|. ...|++|+.||+|+|||+|.+ .++. .+.|.+-
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~--Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQR--PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCceeecCc--cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCc
Confidence 888888999999998876544332 25568899999999995 478999999999999999988 3333 3789999
Q ss_pred eEEEEEcCCCCEEEEEeCCC-EEEEECCCC---cceeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCC
Q 011256 366 VTAISFSENGYYLATAAHDG-VKLWDLRKL---KNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKA 438 (490)
Q Consensus 366 i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~---~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~ 438 (490)
|+-|+|+.+-.+|++|+++| ++|||+|.. +++..|..| ..+|+++.|+|.. ..|++++.| +.+|++.....
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999999888999999999 999999975 456677776 7899999999864 455555555 99999964322
Q ss_pred c-------ceEe-----eeecCCCCCcceEEEEEcCCC-CeEEEEeCCCcEEEec
Q 011256 439 D-------WNCI-----KTFPDLSGTGKATCVKFGPDA-KYIAVGSMDRNLRVFG 480 (490)
Q Consensus 439 ~-------~~~~-----~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~ 480 (490)
. ...+ .-+..|.+...+..+.|+++- .+|++.+.|| +.||.
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 0 0000 111223345677889999853 4678888888 45553
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-21 Score=180.68 Aligned_cols=254 Identities=19% Similarity=0.266 Sum_probs=187.7
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC-----CCccceeeeecccccceEEEEEecCCCEEEEEECCCe
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-----DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 297 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 297 (490)
.++..|...|+.+.|++....|++|+.||++++|++.. ....+.+.+|.+|.++|.|+++.+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36667899999999999999999999999999999932 2345788999999999999999999999999999999
Q ss_pred EEEEeCCCC------eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC--CCCCeEEE
Q 011256 298 WCFYDLSSG------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG--HVGAVTAI 369 (490)
Q Consensus 298 i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l 369 (490)
|+.|++... .....+.. ...||...+..+++|+....|++++.||+++.|+.....+ .++.. ..+.-.++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSG-TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhcc-ceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999976522 11112222 2557889999999999998999999999999999876655 33432 12233455
Q ss_pred EEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCC-----CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcc
Q 011256 370 SFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDS-----ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW 440 (490)
Q Consensus 370 ~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~ 440 (490)
.|-... .++++....+ -.++++.....+..+..... ...+..+.++|.+.+.+++..+ |++++. ...
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn----~~~ 521 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN----KTG 521 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc----ccc
Confidence 554332 1222222222 33444444443333332211 2457888999999999999998 999987 455
Q ss_pred eEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 441 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 441 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
..+.....| ...++++++.|+|-+|++|+.||.|++|.++..
T Consensus 522 ~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 KILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 555555544 778999999999999999999999999999654
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-22 Score=200.37 Aligned_cols=283 Identities=17% Similarity=0.304 Sum_probs=213.2
Q ss_pred EEEEecCCCC-EEEEE----------eCCCcEEEEeCC--CCc----EEEEeccCccCEEEEEEeeCCCE----EEEEeC
Q 011256 191 VSLDIHYSKD-VIATG----------GVDTNAVLFDRP--SGQ----IVTTLSGHSKKVTSVKFVTEGDL----FLTGSA 249 (490)
Q Consensus 191 ~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~--~~~----~~~~~~~h~~~v~~l~~~~~~~~----l~s~s~ 249 (490)
..++|+|.+. ++++| +.+.++-||.+. +.. .+..+. -....+.++|.+.|.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3567888776 55544 234455555432 222 233333 3456889999887664 888899
Q ss_pred CCcEEEEeCCC---CCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 250 DKTVRVWQGSE---DGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 250 dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
||.|.+||... +.....+.+...|.+.|..+.|++... .+++|+.||.|.|||++..+...... .....+.|.
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~ 165 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIK 165 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccce
Confidence 99999999766 344566777889999999999999764 99999999999999998855444432 222347899
Q ss_pred EEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeecCCCC--CeEEEEEcCCC-CEEEEEeCC-C---EEEEECCCCc-c
Q 011256 326 SAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGHVG--AVTAISFSENG-YYLATAAHD-G---VKLWDLRKLK-N 396 (490)
Q Consensus 326 ~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~~-~~l~~~~~d-~---i~iwd~~~~~-~ 396 (490)
+++|+.. ..+|++++.+|.+.|||++..+.+..+..+.+ .+..++|+|++ ..|+++++| + |.+||+|... +
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 9999984 57889999999999999999988877765543 57899999984 455666555 3 9999999754 4
Q ss_pred eeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC-eEEEEeC
Q 011256 397 FRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSM 472 (490)
Q Consensus 397 ~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~ 472 (490)
.+.+..| ...|.++.|++.+ .+|++++.| +.+|+. .+.+.+..+... ...+..+.|.|... .+++++-
T Consensus 246 ~k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~----~tgEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 246 LKILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNP----NTGEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred hhhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecC----CCceEeeecCCC--CcceeeeeecCCCcchhhhhee
Confidence 4555444 7889999999987 788888888 777776 556777777663 67899999999665 7888999
Q ss_pred CCcEEEecCCCCC
Q 011256 473 DRNLRVFGLPGND 485 (490)
Q Consensus 473 dg~v~iw~~~~~~ 485 (490)
||.|-||.+.+..
T Consensus 318 dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 318 DGKISIYSLQGTD 330 (1049)
T ss_pred ccceeeeeeecCC
Confidence 9999999998765
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=162.81 Aligned_cols=260 Identities=18% Similarity=0.279 Sum_probs=187.2
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc--cceeeeecccccceEEEEEecCCCEEE-EEECCCeEE
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN--YDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWC 299 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~ 299 (490)
..+++|.+.|++++|+.||++|++++.|++|++|++..-.+ .++++.- -.-+..+.+.|.||-+-++ ++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35789999999999999999999999999999999875211 1111111 1123568899999876554 445566899
Q ss_pred EEeCCCCe---EEEEee-c---CCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEc
Q 011256 300 FYDLSSGI---CLTQVS-D---AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 300 iwd~~~~~---~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 372 (490)
+|.+...+ ....+. . .....|...+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..+.|
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99764322 111111 0 1122345566777777788999999999999999998 88888888777777889999
Q ss_pred CCCCEEEEEeCCC-EEEEECC---CC---cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcc---
Q 011256 373 ENGYYLATAAHDG-VKLWDLR---KL---KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW--- 440 (490)
Q Consensus 373 ~~~~~l~~~~~d~-i~iwd~~---~~---~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~--- 440 (490)
|+|+++++++-.- |++|..- ++ +..+.+...+|...|..++|+++...+++.+.| .+||+.+......
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998886 9999863 22 223455556668899999999999999999999 9999986533222
Q ss_pred eEeeee--cCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 441 NCIKTF--PDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 441 ~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
..++.. +.+...+....+.++|.|+.|+.+. ...+++|..+.++
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGK 363 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCc
Confidence 222222 1222234455899999999888764 5578888877654
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.1e-21 Score=179.60 Aligned_cols=249 Identities=21% Similarity=0.298 Sum_probs=194.2
Q ss_pred EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEE
Q 011256 221 IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWC 299 (490)
Q Consensus 221 ~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~ 299 (490)
+...+.||++.|.+|...|.|.+|++|+.||+|+||.+.++ .|+.++. ..+.|.|++|+|.+. .++++..++.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence 34567899999999999999999999999999999999997 7888776 456899999999875 333333444455
Q ss_pred EEeCCCCeEEE----------------------EeecC----------CCCCCCCCceEEEEcCCCcEEEEEcCC---Cc
Q 011256 300 FYDLSSGICLT----------------------QVSDA----------GTDGRPEGYTSAAFHPDGLILGTGTSE---AL 344 (490)
Q Consensus 300 iwd~~~~~~~~----------------------~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~ 344 (490)
|.+..-|..+. ..... ....|...|..+.||..|.+|++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 54432221000 00000 011245788999999999999997654 47
Q ss_pred EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEE
Q 011256 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 424 (490)
|.|+++...+...-|....+.|.++.|+|...+|++++...|+|||+.....++.+... ...|..++++|.|.-|++|
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEe
Confidence 89999988776666766778899999999999999999999999999987777666554 5689999999999999999
Q ss_pred ecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 425 SAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 425 ~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+.+ +..||++...+.+. ++..| ...+++++|++.-.++++|+.||.+.||.
T Consensus 626 s~d~k~~WfDldlsskPyk---~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYK---TLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred cCCCeeEEEEcccCcchhH---Hhhhh--hhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999 88888865544443 44443 77899999999999999999999999884
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.7e-20 Score=151.73 Aligned_cols=271 Identities=17% Similarity=0.266 Sum_probs=195.0
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCC----------CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeC
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS----------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 258 (490)
.|.+-+++|.+++|++|..+|.|.++.+++ ...+...++|.++|..++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 456667899999999999999999998653 23355668999999999997 45677766 499999976
Q ss_pred CCCCcc---ceee--eeccc-----ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 259 SEDGNY---DCKH--TLKDH-----TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 259 ~~~~~~---~~~~--~~~~h-----~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
...... +... ....| -..|++|...|..+.++.++.|+.++-||+++|+....+. +|...+.++.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-----GHtDYvH~vv 163 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-----GHTDYVHSVV 163 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-----CCcceeeeee
Confidence 543210 0000 01112 2468999999998888888899999999999999888876 6678899998
Q ss_pred EcCCCcEEEEEcCCCcEEEEECCCCceeeeecC---------CC-CCeEEEEEcCCCCEEEEEeCCCEEEEECCCCccee
Q 011256 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---------HV-GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR 398 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------~~-~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~ 398 (490)
.-.....+++|++||++++||.++++++..+.. |. ..|-+++. +..+|++|+.-.+.+|.++..++..
T Consensus 164 ~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTC 241 (325)
T ss_pred ecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceE
Confidence 866666789999999999999999999888743 21 24666666 4569998877779999999999999
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC-CCeEEEEeCCCcE
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNL 476 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v 476 (490)
.|+. ..++..+.|..+ ..++.|-.+ +.-|.+ .+......+.. ....++..|+.. -++|-.++...++
T Consensus 242 vfpi---pa~v~~v~F~~d-~vl~~G~g~~v~~~~l-----~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ag~s~~~ 310 (325)
T KOG0649|consen 242 VFPI---PARVHLVDFVDD-CVLIGGEGNHVQSYTL-----NGVLQANIPVE--STACYSASWQTSPIKFISIAGFSNKL 310 (325)
T ss_pred EEec---ccceeEeeeecc-eEEEeccccceeeeee-----ccEEEEeccCC--ccceeeecccCCceEEEEecccceee
Confidence 9887 467888888643 334444233 888876 23333333222 223344444432 3556667777888
Q ss_pred EEec
Q 011256 477 RVFG 480 (490)
Q Consensus 477 ~iw~ 480 (490)
.|+.
T Consensus 311 ~i~~ 314 (325)
T KOG0649|consen 311 HILK 314 (325)
T ss_pred eeee
Confidence 7763
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=164.09 Aligned_cols=290 Identities=14% Similarity=0.218 Sum_probs=212.2
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC------CcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS------GQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
...|.+.|+++.|+.++++|++|+.|..+.+|++.. .+++.... .|...|.|++|.....++++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 457889999999999999999999999999999653 34444443 45588999999988899999999999999
Q ss_pred EeCCCCCccceeeeec--ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcCC
Q 011256 256 WQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPD 332 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (490)
.|+++. +.+..+. ...+.|+.+..+|..+.|++.+.+|.|.+||.+... .+..+... ........+.|+|.
T Consensus 132 HDiEt~---qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A---N~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 132 HDIETK---QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA---NSGKNFYTAEFHPE 205 (609)
T ss_pred eecccc---eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec---CCCccceeeeecCC
Confidence 999986 3444433 233589999999999999999999999999998765 22222211 22356788999994
Q ss_pred -CcEEEEEcCCCcEEEEECCCCc-eeeeec---C---CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC
Q 011256 333 -GLILGTGTSEALVKIWDVKSQA-NVAKFD---G---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 333 -~~~l~~g~~dg~i~iwd~~~~~-~~~~~~---~---~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 403 (490)
..+|++.+..+-+-+||.+... .+.... + ......++.|+|+|+.|.+--... -.+||+-...+..--..+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 5788899999999999998653 222221 1 122346788999999988876665 677888775543211111
Q ss_pred C-----CCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcce-------------------EeeeecCCCCCcceEE
Q 011256 404 D-----SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-------------------CIKTFPDLSGTGKATC 457 (490)
Q Consensus 404 ~-----~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~-------------------~~~~~~~~~~~~~v~~ 457 (490)
. ....+.+++|..+.. +++|+.+ +.+|.+......+. .+..+.+| ..-++.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--RSv~NQ 362 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--RSVPNQ 362 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--cccccc
Confidence 1 134567788865544 7888887 99998864322211 12234444 667889
Q ss_pred EEEcCCCCeEEEEeCCCcEEEecC
Q 011256 458 VKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 458 ~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
+.|+|...+|++.|-...++||.-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eeecCCcceEeccchhhheecccc
Confidence 999999999999999999999964
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1.8e-20 Score=166.34 Aligned_cols=231 Identities=23% Similarity=0.338 Sum_probs=181.5
Q ss_pred EeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCc----cceeeeecccccceEEEEEecCC-CEEEEEECCCe
Q 011256 224 TLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNT 297 (490)
Q Consensus 224 ~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~ 297 (490)
.+.||+++|..++|+| +...||+||.|.+|.||.+..++. ...+..+.+|...|-.++|||.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999 555899999999999999876532 35577889999999999999975 78999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCC-CeEEEEEcCCCC
Q 011256 298 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGY 376 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~ 376 (490)
|.+||+.+++.+..+. |+..|.++.|+-||.+|++.+.|..|+|||.++++.+..-.+|.+ .-..+.|..+|.
T Consensus 156 v~iWnv~tgeali~l~------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred EEEEeccCCceeeecC------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 9999999999887764 678999999999999999999999999999999999998877876 345566788888
Q ss_pred EEEEEeCC---C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCC
Q 011256 377 YLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDL 449 (490)
Q Consensus 377 ~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~ 449 (490)
++.+|-.. . +-+||..+......+...+....|.---|+++...++.++.. |+.|.+.........+.+|..
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S- 308 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS- 308 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc-
Confidence 66666443 2 999998877655555555556677777889999988877665 999998543333334444433
Q ss_pred CCCcceEEEEEcCC
Q 011256 450 SGTGKATCVKFGPD 463 (490)
Q Consensus 450 ~~~~~v~~~~~s~~ 463 (490)
..+-..+.|.|.
T Consensus 309 --~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 --KEPQRGMGFMPK 320 (472)
T ss_pred --CCcccccccccc
Confidence 333445555553
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.2e-20 Score=175.27 Aligned_cols=252 Identities=17% Similarity=0.265 Sum_probs=185.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE--eccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQG 258 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~ 258 (490)
..-.|.+.|..+.|-|....|++++.|.++++||+..+++... +.||.+.|.+++|.|.. ..|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3456889999999999667999999999999999999988776 88999999999999955 48999999999999996
Q ss_pred CCCCc------------------------cceeeeecccccceEE---EEEecCCCEEEEEEC-CCeEEEEeCCCCeEEE
Q 011256 259 SEDGN------------------------YDCKHTLKDHTAEVQA---VTVHATNKYFVTASL-DNTWCFYDLSSGICLT 310 (490)
Q Consensus 259 ~~~~~------------------------~~~~~~~~~h~~~v~~---l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~ 310 (490)
..... .+.+.....+...|.+ +.+..|...|++++. |+.|+|||++......
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 54320 0011112234444555 555668889999888 9999999999876654
Q ss_pred EeecCCC---CCC---CCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC--ceeeeecCCCC--CeEEEEEcCCCCEEEE
Q 011256 311 QVSDAGT---DGR---PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVG--AVTAISFSENGYYLAT 380 (490)
Q Consensus 311 ~~~~~~~---~~~---~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~--~i~~l~~s~~~~~l~~ 380 (490)
....... ..+ ..++.++.....|.+|++.+.|+.|++|++.+. .++..+.++.. ....-..+|++.++++
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 4432211 111 346788888888898888888999999999764 34444444322 1223346889999999
Q ss_pred EeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEe
Q 011256 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVYQVA 434 (490)
Q Consensus 381 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~ 434 (490)
|+.+. .++|.+.+...-..+.. .+...|++++|.|.. .-+++++.| ++||++.
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLL-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cCCCcceeeeeecCccCChhhhh-CcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 99998 99999988765433322 236789999998764 234555777 9999984
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1.2e-18 Score=165.88 Aligned_cols=273 Identities=12% Similarity=0.205 Sum_probs=182.5
Q ss_pred EEEEeCCCcEEEEeCCC-Cc--EEEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCccceeeeecccccce
Q 011256 202 IATGGVDTNAVLFDRPS-GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 202 l~~~~~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
+++...++.|.+|++.+ ++ .+..+. +.+....+.++|++++|++++ .++.|.+|++...+.+....... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 34446789999999964 33 445554 345677899999999887664 58889999997433333333322 23456
Q ss_pred EEEEEecCCCEEEEEEC-CCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEEECCCCc
Q 011256 278 QAVTVHATNKYFVTASL-DNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA 354 (490)
Q Consensus 278 ~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~ 354 (490)
..++++|+++++++++. ++.|.+|++.+.. ........ .+.....+++++|+++++++++ .++.|.+||+.+..
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 78999999998888764 8899999997432 11111100 1113467788999998886554 56899999997633
Q ss_pred eee-------eecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCC----cceeeeecCC----CCCCeeEEEEcCC
Q 011256 355 NVA-------KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL----KNFRSFESSD----SETPTNSVDFDHS 417 (490)
Q Consensus 355 ~~~-------~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~----~~~~~~~~~~----~~~~i~~i~~s~~ 417 (490)
.+. ... .......+.|+|+|++++++... + |.+||+... +.+..+.... .......+.++|+
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111 12346789999999999888763 4 999999742 2233332211 1112346889999
Q ss_pred CCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC-CCcEEEecCCC
Q 011256 418 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-DRNLRVFGLPG 483 (490)
Q Consensus 418 ~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~ 483 (490)
|++++++... +.+|+++........+..... ......+.|+|||++|++++. ++.|.+|+++.
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9999998653 999998654333334443332 124457899999999998775 89999998864
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.5e-21 Score=193.41 Aligned_cols=240 Identities=19% Similarity=0.309 Sum_probs=192.4
Q ss_pred CCeEEEEecCCCCE----EEEEeCCCcEEEEeCCC------CcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEE
Q 011256 188 PGIVSLDIHYSKDV----IATGGVDTNAVLFDRPS------GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVW 256 (490)
Q Consensus 188 ~~I~~~~~~~~~~~----l~~~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw 256 (490)
...+.++|.+.|.. ||.|..||.|.+||... ...+.++..|.+.|..+.|++... +|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 46678999987764 89999999999999654 234667788999999999999655 99999999999999
Q ss_pred eCCCCCccceeeee--cccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 257 QGSEDGNYDCKHTL--KDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 257 d~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
|+.... .-..+ ....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+..... ...+..+.|||+.
T Consensus 145 Dlnn~~---tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~---~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 145 DLNKPE---TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG---RMHCSVLAWHPDH 218 (1049)
T ss_pred ccCCcC---CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC---ccceeeeeeCCCC
Confidence 998742 22222 2255789999998654 5788889999999999999987777764322 2457899999976
Q ss_pred -cEEEEEcCCC---cEEEEECCCC-ceeeeecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCCC
Q 011256 334 -LILGTGTSEA---LVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 334 -~~l~~g~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 406 (490)
..+++++.|. .|.+||+|.- .+++.+.+|...|.++.|++.+ .+|++++.|+ |.+|+..+++.+..+... .
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--G 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--C
Confidence 4555555443 7999999864 6778888999999999999976 8899999998 999999999999888774 6
Q ss_pred CCeeEEEEcCCCC-EEEEEecC--eEEEEEee
Q 011256 407 TPTNSVDFDHSGS-YLAVASAD--IRVYQVAS 435 (490)
Q Consensus 407 ~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~ 435 (490)
..+..+.|+|... .+++++-+ |.||.+..
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 7899999999876 66666766 88898854
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.6e-19 Score=174.53 Aligned_cols=297 Identities=17% Similarity=0.259 Sum_probs=218.8
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC----CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
+..+..|.-.++|.++||+++++|+|..||.|.+|.-.. ....+.+.-|...|.++.|+++|.+|++|+..|.+.+
T Consensus 198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 446667777799999999999999999999999996322 2335567779999999999999999999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC------CCCCCceEEEE
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD------GRPEGYTSAAF 329 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~ 329 (490)
|.+.+++ ..-+..-.++|..+.++|++.+.+....|..|.+....+......+...... ...+-.+.+++
T Consensus 278 Wq~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 278 WQLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred EeecCCC----cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 9998863 3444556789999999999999999999999999887665544443322111 12345678899
Q ss_pred cCCCcEEEEEcCCCcEEEEECCCCceeeeec-----------CCCCCeEEEEEcCCCCEEEEEe--------CCC---EE
Q 011256 330 HPDGLILGTGTSEALVKIWDVKSQANVAKFD-----------GHVGAVTAISFSENGYYLATAA--------HDG---VK 387 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----------~~~~~i~~l~~s~~~~~l~~~~--------~d~---i~ 387 (490)
+|..+.++..+..|.|.+||+-+.+.+..+. .+...++.++.+.+|.+++|.- .++ ++
T Consensus 354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 9977778888889999999998877666552 1223577888888899999873 233 88
Q ss_pred EEECCCCcc----eeeeecCCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEE------eecCCcceEeeeecCCCCCcc
Q 011256 388 LWDLRKLKN----FRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQV------ASVKADWNCIKTFPDLSGTGK 454 (490)
Q Consensus 388 iwd~~~~~~----~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~------~~~~~~~~~~~~~~~~~~~~~ 454 (490)
+|-...... ...+..++....+..+..++... .+++++.+ ++||.+ ......|.+...-.. +..+
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy--~k~~ 511 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY--HKTP 511 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc--ccCc
Confidence 896654332 22233332233333333444443 67777776 999998 445566777655433 4778
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 455 ATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 455 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+++++|+.||..|+ .+.|+.|.+||...
T Consensus 512 i~a~~fs~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 512 ITALCFSQDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred ccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence 99999999997555 55799999999987
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=6.6e-20 Score=156.41 Aligned_cols=270 Identities=19% Similarity=0.331 Sum_probs=195.2
Q ss_pred CCcEEEEeCCCCc--E-EEEeccCccCEEEEEEee-CCCEEEEEeCC-------CcEEEEeCCCCCc------cceeeee
Q 011256 208 DTNAVLFDRPSGQ--I-VTTLSGHSKKVTSVKFVT-EGDLFLTGSAD-------KTVRVWQGSEDGN------YDCKHTL 270 (490)
Q Consensus 208 dg~i~iwd~~~~~--~-~~~~~~h~~~v~~l~~~~-~~~~l~s~s~d-------g~i~iwd~~~~~~------~~~~~~~ 270 (490)
|+.|.+.++..+. + ...|..|.+.|..++-+| +..+|+++..+ ..+.||.+..... ++++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5667776655432 2 345667889999999999 45567776553 2367998866422 3444444
Q ss_pred c-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCceEEEEcC--CCcEEEEEcCCCcEE
Q 011256 271 K-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVK 346 (490)
Q Consensus 271 ~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~ 346 (490)
. .+-+.|.|+.|.|++..+++.. |..|.+|++..+.. +..+......++....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 4 4566899999999999998876 78999999998776 44444433444566788899999 78887775 579999
Q ss_pred EEECCCCceeeeec-CCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCeeEEEEcCC-CCEE
Q 011256 347 IWDVKSQANVAKFD-GHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHS-GSYL 421 (490)
Q Consensus 347 iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~-~~~l 421 (490)
.||+++.++...+. .|...|..+.|+|+. .+|++|++|+ |+|||.|+.+. +..+.. |...+.++.|+|. .+++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~--HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG--HSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC--CceEEEEEEecCccceEE
Confidence 99999988777764 577889999999995 5677888888 99999998653 444444 4789999999996 4677
Q ss_pred EEEecC--eEEEEEeecCCc-------------------------ceEeeeecCCCCCcceEEEEEcC-CCCeEEEEeCC
Q 011256 422 AVASAD--IRVYQVASVKAD-------------------------WNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMD 473 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d 473 (490)
++|+.| +.++........ -..+.++.. |...|.+++||. |--.+++-+.|
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccC
Confidence 788888 767654322100 011223334 478999999987 55567888999
Q ss_pred CcEEEecCCC
Q 011256 474 RNLRVFGLPG 483 (490)
Q Consensus 474 g~v~iw~~~~ 483 (490)
|+|.|=+++.
T Consensus 353 GRviIs~V~r 362 (370)
T KOG1007|consen 353 GRVIISSVPR 362 (370)
T ss_pred ceEEeecCCh
Confidence 9998877653
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-20 Score=170.98 Aligned_cols=266 Identities=15% Similarity=0.237 Sum_probs=193.8
Q ss_pred CCcEEEEeCCCCcEEEEeccCc--cCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCC-ccceeeeecccccceEEEEEe
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHS--KKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDG-NYDCKHTLKDHTAEVQAVTVH 283 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~ 283 (490)
...+++||.......-.+..|+ ..+.+++|..... .+++.+.|..+++|.-.... ....+.... ...-.|++..
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~--gd~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT--GDNAFCVACA 88 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccc--cchHHHHhhh
Confidence 3469999987655544444333 3489999976554 23444568889999754421 111222222 2244566666
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC
Q 011256 284 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 363 (490)
Q Consensus 284 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 363 (490)
....|+++|+..+.|+|||++...+...+ .+|...|+++.++....+|++++..|.|.|..+.++.....|....
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-----kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFL-----KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhc-----cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 66789999999999999999955544444 3566899999999999999999999999999999988777776543
Q ss_pred C-CeEEEEEcCCCCE-EEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEEeecC
Q 011256 364 G-AVTAISFSENGYY-LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVK 437 (490)
Q Consensus 364 ~-~i~~l~~s~~~~~-l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~ 437 (490)
+ .|.-+.|+|..++ |.+++++| |.+||+....++..+... |..+...|+|+|... +|++.+.| |.+||...
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~-HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s-- 240 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA-HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS-- 240 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-ccCCcCcceecCCccceEEEecccceEEEeeccc--
Confidence 3 5668999998665 55566778 999999988877666543 378899999999765 55666777 77787732
Q ss_pred CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCCC
Q 011256 438 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPS 488 (490)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 488 (490)
......+.. ..+...++|+++|.+|++|+..|.|..||+.+...|.
T Consensus 241 --~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 241 --QASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred --ccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 222222222 4578899999999999999999999999999877663
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=9.2e-20 Score=180.07 Aligned_cols=288 Identities=16% Similarity=0.300 Sum_probs=213.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccC---ccCEEEEEEee--CCCEEEEEeCCCcEEEEeCCCC--
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED-- 261 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~-- 261 (490)
+-..+.|+|-...++++...-.|+|||...++.+..|..+ ...|+.+++-. |..++++|+.||.|+||+-...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4567889998899999988889999999999988877644 35688999865 4458999999999999975433
Q ss_pred Cccceeeeecccc-------cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CC
Q 011256 262 GNYDCKHTLKDHT-------AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DG 333 (490)
Q Consensus 262 ~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 333 (490)
+..+.+..+.+-. +.=.-+.|.....+|+++|.-..|+|||......+..+... ....++++.-+- .|
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~----s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG----SSTLVTALSADLVHG 1221 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC----CCccceeecccccCC
Confidence 2233333332211 11134567777778888888899999999988888777543 235666665544 47
Q ss_pred cEEEEEcCCCcEEEEECCCC---ceeeeecCCCCC--eEEEEEcCCCCE-EEEEeCCC-EEEEECCCCccee--eeecCC
Q 011256 334 LILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGA--VTAISFSENGYY-LATAAHDG-VKLWDLRKLKNFR--SFESSD 404 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~--i~~l~~s~~~~~-l~~~~~d~-i~iwd~~~~~~~~--~~~~~~ 404 (490)
+++++|..||.|++||.+.. ..+..+..|... |..+.+.++|.- |++|+.+| |++||+|...... .+..+-
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 99999999999999999864 346677778776 999999998765 99999999 9999999852222 222211
Q ss_pred C-CCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCC-----CCCcceEEEEEcCCCCeEEEEeCCCcEE
Q 011256 405 S-ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL-----SGTGKATCVKFGPDAKYIAVGSMDRNLR 477 (490)
Q Consensus 405 ~-~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 477 (490)
. .+..+++..++....+++|+.. ++||++.. +.+..+..+ ...+.+.|++|+|-.-.|++|+.|..|.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-----~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSAQLIKIYSLSG-----EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCcceEEEEecCh-----hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 1 2348999999999999999977 99999732 222222211 1246789999999999999999999999
Q ss_pred EecCCCCC
Q 011256 478 VFGLPGND 485 (490)
Q Consensus 478 iw~~~~~~ 485 (490)
||..+.+.
T Consensus 1377 iYs~~k~~ 1384 (1387)
T KOG1517|consen 1377 IYSCEKPR 1384 (1387)
T ss_pred EeecCCcC
Confidence 99987654
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8.7e-21 Score=175.81 Aligned_cols=219 Identities=22% Similarity=0.313 Sum_probs=180.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--------CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEE
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 254 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 254 (490)
...|.+.|..+.|+|....|++++.||.+.+|++.. -+.+.+|.+|.++|.|+++.+++..+++|+.||+|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 356788999999999999999999999999999832 256789999999999999999999999999999999
Q ss_pred EEeCCCCCc-------cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC-----------
Q 011256 255 VWQGSEDGN-------YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG----------- 316 (490)
Q Consensus 255 iwd~~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------- 316 (490)
.|++..... ......+.||.+.|+.+++|+....|++++.||+++.|+...... ..+....
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 997653211 134456789999999999999999999999999999998765433 1110000
Q ss_pred ---------------------------------CC---CCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec
Q 011256 317 ---------------------------------TD---GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 360 (490)
Q Consensus 317 ---------------------------------~~---~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 360 (490)
.. .....+.-+.++|.+.+.+++..|+.|+++|..+++.+....
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~ 528 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV 528 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee
Confidence 00 011345678889999999999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 361 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
.|...++++++.|+|-+|++++.|+ +++|.+....++.....
T Consensus 529 a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 529 AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred eccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 9999999999999999999999999 99999877666555443
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=2.1e-20 Score=175.06 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=101.7
Q ss_pred eccccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcE------EEEeccCccCEEEEEEeeCCCEEEEEeCCCc
Q 011256 180 HPLHKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQI------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 252 (490)
..+...|.+.|+.+.|+|- ..+||+|+.|..|+||.+..+.. -..+.+..-.|-|+.|+|..+-|+..+.-|+
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 3467789999999999994 45899999999999999874422 1223344556889999996664555556699
Q ss_pred EEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC
Q 011256 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 305 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 305 (490)
++|||+.++ +....+.+|...|.++.|+.||..+++++.|..|+|||.+.
T Consensus 152 v~i~D~stq---k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 152 VYITDISTQ---KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEEEcccC---ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999987 78888899999999999999999999999999999999875
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=7.5e-18 Score=165.89 Aligned_cols=289 Identities=27% Similarity=0.528 Sum_probs=225.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-EEEEeccCcc-CEEEEEE-eeCCC-EEEEEeC-CCcEEEE
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSK-KVTSVKF-VTEGD-LFLTGSA-DKTVRVW 256 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~l~~-~~~~~-~l~s~s~-dg~i~iw 256 (490)
....|...|.++.+.+.+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 345678899999999999999999999999999998876 6677766443 7777777 77777 5555444 9999999
Q ss_pred eCCC-CCccceeeeecccccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc
Q 011256 257 QGSE-DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 334 (490)
Q Consensus 257 d~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (490)
+... . .....+..|...|..+.|+|++.++++++. |+.+++|++..+..+..+.. |...+.+++|+|++.
T Consensus 140 ~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~ 211 (466)
T COG2319 140 DLSTPG---KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-----HTDPVSSLAFSPDGG 211 (466)
T ss_pred EecCCC---eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-----CCCceEEEEEcCCcc
Confidence 9986 3 567778889999999999999998888886 99999999998777666653 558899999999998
Q ss_pred -EEEEEcCCCcEEEEECCCCceee-eecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCee
Q 011256 335 -ILGTGTSEALVKIWDVKSQANVA-KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTN 410 (490)
Q Consensus 335 -~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~ 410 (490)
++++++.|+.|++||...+..+. .+.+|.... ...|++++.++++++.++ +++||++.... ...+ ..+...+.
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~ 288 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVL 288 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEE
Confidence 55555999999999999888777 677787765 448999998888888888 99999997765 3444 23367899
Q ss_pred EEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEE-eCCCcEEEecCCCCC
Q 011256 411 SVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGND 485 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~ 485 (490)
++.|+|++..+++++.+ +.+|+... ...........+...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLET----GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCC----CceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 99999988888888888 88996632 2222222211124468889884343555555 688999999987654
No 174
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=2.1e-19 Score=155.70 Aligned_cols=232 Identities=19% Similarity=0.225 Sum_probs=184.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..+|+|.+|++++..+|++.....|.||..... +..+++..|...|+.++|+|..+.|++|+.|..-+||....++.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 468999999999999999999999999987654 46788999999999999999999999999999999999977788
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
++....+..++..++++.|+|.++.|++|+....|.||-++....-..-+.. ...+.+.|.+++|+|++-+|++|+.|+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhi-kkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHI-KKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhh-CCccccceeeeeccCCcceecccccCc
Confidence 8888888889999999999999999999999999999988765543222211 234457899999999999999999999
Q ss_pred cEEEEECC-----C-------------CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-eeeeecC
Q 011256 344 LVKIWDVK-----S-------------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESS 403 (490)
Q Consensus 344 ~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~ 403 (490)
..++|..- . |..+.++....+.+..+.|+|+|..|+-.+.|. +.+-|...... .......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99998631 1 123334445567899999999999999999987 88888776542 2222222
Q ss_pred CCCCCeeEEEEcCCCCEE
Q 011256 404 DSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l 421 (490)
.-+..++.|-.+...+
T Consensus 249 --~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 249 --QLPLLSVSWISENSVV 264 (361)
T ss_pred --cCCceeeEeecCCcee
Confidence 2455666665443333
No 175
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=6.4e-18 Score=149.32 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=204.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCcc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNY 264 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~ 264 (490)
...|..+.|+.+...|..|+.|| .++|+................|.-+-| ...+++..+.+. .++++++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLF--SSSLvaiV~~~qpr~Lkv~~~Kk~--- 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLF--SSSLVAIVSIKQPRKLKVVHFKKK--- 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeec--ccceeEEEecCCCceEEEEEcccC---
Confidence 45788888999999999999988 678877654432222222334555556 445666665543 4888888764
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE--cCC
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG--TSE 342 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g--~~d 342 (490)
..+..+. ...+|.++.++ -+.|+++-.+ .|+|||+++.+.+.++... ..+..++.++.+++.+.+++.- ...
T Consensus 79 ~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETT--PPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhcc--CCCccceEeeccCCCCceEEecCCCCC
Confidence 2222222 34678888886 4556666554 4999999999999888643 2344667777777777888864 346
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
|.|.+||+.+-+.+..+..|.+++-+++|+++|.+|+++++.| |+||.+.+++.+..|........|.+++|+|++++
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 8999999999999999999999999999999999999999998 99999999999999987655667899999999999
Q ss_pred EEEEecC--eEEEEEeecCCcceE------------------------------eeeecC--CCCCcceEEEEEc--CCC
Q 011256 421 LAVASAD--IRVYQVASVKADWNC------------------------------IKTFPD--LSGTGKATCVKFG--PDA 464 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~------------------------------~~~~~~--~~~~~~v~~~~~s--~~~ 464 (490)
|++.++. |+||.++........ .+.|.. ....+.-..+.+. +..
T Consensus 233 L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~ 312 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKI 312 (391)
T ss_pred EEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCC
Confidence 9988877 999988642211000 000000 0001111223333 467
Q ss_pred CeEEEEeCCCcEEEecCCCC
Q 011256 465 KYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 465 ~~l~s~~~dg~v~iw~~~~~ 484 (490)
.++..++.||.++.|.++..
T Consensus 313 ~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 313 PRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CEEEEEEcCCeEEEEEcCCC
Confidence 78889999999999999764
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=3e-19 Score=154.81 Aligned_cols=246 Identities=16% Similarity=0.261 Sum_probs=176.7
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc---------cceeeeec-ccccceEEEEEe-------cCCCEEEEEEC
Q 011256 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN---------YDCKHTLK-DHTAEVQAVTVH-------ATNKYFVTASL 294 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~~~~~~-~h~~~v~~l~~~-------~~~~~l~s~~~ 294 (490)
...+.|+|||..|++-+.|..+++|++....- ......+. .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 44678999999999999999999999754210 01111111 123456666665 56789999999
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEEC-CCCceee--ee-----cCCCCCe
Q 011256 295 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV-KSQANVA--KF-----DGHVGAV 366 (490)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~~~~--~~-----~~~~~~i 366 (490)
+.-|++||.-+|+....+........-....+++|+|||..|++|. ...|++||+ +.|.... .. .+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999998877765432222223457899999999999875 578999999 5553221 11 2346788
Q ss_pred EEEEEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcce
Q 011256 367 TAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWN 441 (490)
Q Consensus 367 ~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~ 441 (490)
.+++|+|.. ..+++++... +-||.-....++..+..+ .+.|+.++|.++|+.|++|... |..||+.. ...
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~---~~~ 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY---SRD 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehh---ccc
Confidence 999999964 5888888875 666666666666666544 8899999999999999999875 99999943 233
Q ss_pred EeeeecCCCC-CcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 442 CIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 442 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.+..+..|.. ...=.-....|++++|++|+.||.|++||++.
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 3444444321 12222345578999999999999999999987
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.6e-19 Score=169.23 Aligned_cols=206 Identities=16% Similarity=0.243 Sum_probs=147.0
Q ss_pred ceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEee--cCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECC
Q 011256 276 EVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVS--DAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK 351 (490)
Q Consensus 276 ~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~ 351 (490)
.|+.+.|.| |...|++++.||.|++|.+..+....... ......|...|+++.||| -...|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 467778887 55789999999999999987654322111 111335668899999999 45789999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--
Q 011256 352 SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN-FRSFESSDSETPTNSVDFDHSGSYLAVASAD-- 427 (490)
Q Consensus 352 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-- 427 (490)
+++....+.+|.+.|..++|+|+|+.+++.+.|+ |++|.-++... ++.-.... ...-..|.|..+|+++++.+-|
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEeccccc
Confidence 9999999999999999999999999999999999 99999987654 22222221 3445678899999999988776
Q ss_pred ----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC-eEEEEeCCCcEEEecCCCCC
Q 011256 428 ----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 428 ----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~ 485 (490)
+.+|+..... ...+.+.... ....+.--.+.+|.. ++++|-.|..|.+|.+-...
T Consensus 788 SeRQv~~Y~Aq~l~--~~pl~t~~lD-vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLD--LRPLYTQVLD-VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred chhhhhhhhhhhcc--CCcceeeeec-ccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 7778753221 1111111000 011111123455555 46777789999999886544
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=5.3e-17 Score=159.83 Aligned_cols=284 Identities=30% Similarity=0.556 Sum_probs=220.1
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQG 258 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~ 258 (490)
.....|...|.++.|+|++..+++++. |+.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.|++||.
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~ 228 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence 345678889999999999998888885 99999999998889999999999999999999998 5555599999999987
Q ss_pred CCCCccceee-eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 259 SEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 259 ~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
..+ .... .+.+|...+ ...|+|++.++++++.|+.+++|++..... ...+ .+|...+.++.|+|++..+
T Consensus 229 ~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 229 STG---KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-----SGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred CCC---cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-----ecCCccEEEEEECCCCCEE
Confidence 743 4555 577888775 448999998999999999999999987765 3333 2446889999999988888
Q ss_pred EEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcCCCCEEEEE-eCCC-EEEEECCCCcceeeeecCCCCCCeeEE
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATA-AHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~-~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 412 (490)
++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..++ +.+|++........... ...+..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 376 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSV 376 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEE
Confidence 889989999999998887666665 677789999994333566665 4566 88899988772222222 2227889
Q ss_pred EEcCCCCEEEE-EecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 413 DFDHSGSYLAV-ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 413 ~~s~~~~~l~~-~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.+.+ ...+.. +..+ +.+|+. ............ ...+....+++++.++++++.++.+++|+...
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDL----STGSLLRNLDGH--TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEec----ccCeeeeeccCC--CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9988 633333 3444 999987 333333333321 16888999999999999999999999999876
No 179
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=2.8e-20 Score=168.43 Aligned_cols=274 Identities=20% Similarity=0.330 Sum_probs=220.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
+-..+.++.+|..++.|+..|.|-.+|..++++...+.. ...|.++.|..+.++||++- ...+.|||-.. ..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~G----tElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNG----TELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCC----cEEe
Confidence 446789999999999999999999999999999888774 45699999988888777765 47899999655 5556
Q ss_pred eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
.+..| ..|..+.|.|..-+|++++..|.+..-|+.+|+.+..+... .+.+..++-+|-+..+-+|...|+|.+|
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----AGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----CCccchhhcCCccceEEEcCCCceEEec
Confidence 66544 46899999999999999999999999999999998877643 2667888999999999999999999999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 349 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
...+.+++..+-.|.++|.+|++.++|+|++|++.|. ++|||+|+...+.++.. ..+...++||..|.+.++-+..
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~SqkglLA~~~G~~ 355 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKGLLALSYGDH 355 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCccccccccccceeeecCCe
Confidence 9999999999999999999999999999999999998 99999999887766665 4567888898766554444444
Q ss_pred eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 428 IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 428 i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
+.||.=... ........+-.|...+.|..+.|.|-...|-.|-..|--.|
T Consensus 356 v~iw~d~~~-~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 356 VQIWKDALK-GSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred eeeehhhhc-CCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 999963221 11223334445555679999999998777777765554333
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.6e-19 Score=152.27 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=195.0
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
+.|.+.++++.|..++. |.+|...|.|++|++.+......+. .|...|+.+.-.|+ +.|.+-+.|+.+.+|++....
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 46778999999987665 8889999999999999988888887 67788888888887 558899999999999987632
Q ss_pred ccceeeeecccccceEEEEEec-----CCC----EEEEEECCC-eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHA-----TNK----YFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 331 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~-----~~~----~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 331 (490)
+ ...|.-.++++.|.+ +++ .++.-+... .+.+-|......+..... ...+..+.+.|..+.-
T Consensus 89 -~-----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd-~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 89 -F-----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD-SERSKLGSVMCQDKDHA 161 (323)
T ss_pred -e-----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc-hhccccCceeeeecccc
Confidence 1 122334455555543 211 112111110 022223222222222221 1223345666666433
Q ss_pred CC--cEEEEEcCCCcEEEEECCCCceee----------eecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc--c
Q 011256 332 DG--LILGTGTSEALVKIWDVKSQANVA----------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK--N 396 (490)
Q Consensus 332 ~~--~~l~~g~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~--~ 396 (490)
++ -++++|.++|.|.+||+.++..+. ....|..+|.++.|.+.-..=++|+.+. +..|++.... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 23 467788999999999999984333 3346889999999987544445555554 8888876432 1
Q ss_pred --eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC
Q 011256 397 --FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 472 (490)
Q Consensus 397 --~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 472 (490)
...+... ...+..+.+-||++.+++++.| |+||.+ .+.+.+..+..| .+.|++++|+|+...+|+++.
T Consensus 242 q~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVysw----rtl~pLAVLkyH--sagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 242 QIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSW----RTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred cccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEe----ccCCchhhhhhh--hcceeEEEeCCCCchhhhccC
Confidence 1112221 4568889999999999999999 999998 667777777776 689999999999999999999
Q ss_pred CCcEEEecC
Q 011256 473 DRNLRVFGL 481 (490)
Q Consensus 473 dg~v~iw~~ 481 (490)
|++|.+|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999987
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=6.7e-19 Score=156.47 Aligned_cols=230 Identities=20% Similarity=0.347 Sum_probs=175.4
Q ss_pred eeccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEeccCccCEEEEEEeeC-CCEEEEEeC
Q 011256 179 SHPLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTE-GDLFLTGSA 249 (490)
Q Consensus 179 ~~~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~ 249 (490)
..++..+|+++|..++|+| +...||+|+.|.+|.||++..+ +.+..+.+|...|--+.|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3467889999999999999 4568999999999999998754 446788899999999999995 458999999
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEE
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 329 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (490)
|.+|.+||+.++ ..+.++. |.+.|+++.|+.+|.+|++.+.|..|+|||.++++.+..-..+. + ..-.-+.|
T Consensus 153 Dn~v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he--G--~k~~Raif 224 (472)
T KOG0303|consen 153 DNTVSIWNVGTG---EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE--G--AKPARAIF 224 (472)
T ss_pred CceEEEEeccCC---ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc--C--CCcceeEE
Confidence 999999999997 5555666 99999999999999999999999999999999999887764321 1 23345567
Q ss_pred cCCCcEEEEEc---CCCcEEEEECCCCc---eeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcce-eee
Q 011256 330 HPDGLILGTGT---SEALVKIWDVKSQA---NVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNF-RSF 400 (490)
Q Consensus 330 ~~~~~~l~~g~---~dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~-~~~ 400 (490)
-.+|.++.+|. .+..+.+||..+-+ ...++. ....|.---|.++...+..++.+ + |+.|.+....+. ..+
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 77888666664 46789999976543 233444 33456666788888888777665 5 999999876542 222
Q ss_pred ecCCCCCCeeEEEEcCC
Q 011256 401 ESSDSETPTNSVDFDHS 417 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~ 417 (490)
.......+-..+.|-|.
T Consensus 304 n~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 304 NTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cccccCCcccccccccc
Confidence 22222444555666554
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=2.3e-18 Score=167.76 Aligned_cols=269 Identities=19% Similarity=0.205 Sum_probs=189.2
Q ss_pred CcEEEEeCCCC-cEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCc--ccee-eeecccccceEEEEEe
Q 011256 209 TNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGN--YDCK-HTLKDHTAEVQAVTVH 283 (490)
Q Consensus 209 g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~~-~~~~~h~~~v~~l~~~ 283 (490)
+.+.||++... .....+. ....|.|++|+| +..+++.|+.+|.|.+||+..... ...+ .....|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999998876 3334444 567799999999 566889999999999999987643 1111 2223688999999997
Q ss_pred cCC--CEEEEEECCCeEEEEeCCCCeEEEEeec-C------CCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCC
Q 011256 284 ATN--KYFVTASLDNTWCFYDLSSGICLTQVSD-A------GTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 284 ~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~------~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~ 353 (490)
.+. .-|++++.||.|..|+++.-........ . ........+++++|.+ +...|++|+.+|.|.--+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 654 4599999999999998875433111110 0 0112235789999998 5688999999999887443222
Q ss_pred --------ceeeeecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEECC-CCcceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 354 --------ANVAKFDGHVGAVTAISFSENGY-YLATAAHDGVKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 354 --------~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~d~i~iwd~~-~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
+....+..|.++|+++.++|-+. .+.++++.+++||... ...++..+... ...+++++|||...-+++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc--cceeeeeEEcCcCceEEE
Confidence 12334566889999999999754 4445554459999987 55665555543 456999999998866555
Q ss_pred Eec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 424 ASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 424 ~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
... + +.+||+.... ..++...... ....+.+.|++.|+.|++|+..|.+++|++..+
T Consensus 459 ~~d~~G~l~iWDLl~~~--~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDD--EEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEcCCCceehhhhhccc--cCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444 4 8999984422 2333333222 445678889999999999999999999999643
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.5e-18 Score=149.57 Aligned_cols=209 Identities=19% Similarity=0.338 Sum_probs=162.5
Q ss_pred cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC--CCcEEEEEcCCCcEEEE
Q 011256 271 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIW 348 (490)
Q Consensus 271 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iw 348 (490)
.+|.+-|.++.|.+.|+.+++|+.|++++|||.+........... -..|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~-Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS-WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee-EEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 368889999999999999999999999999997654433222211 335668899999866 58999999999999999
Q ss_pred ECCC---------CceeeeecCCCCCeEEEEEcCC--CCEEEEEeCCC-EEEEECCCCccee------eee-----cCCC
Q 011256 349 DVKS---------QANVAKFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLKNFR------SFE-----SSDS 405 (490)
Q Consensus 349 d~~~---------~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~-i~iwd~~~~~~~~------~~~-----~~~~ 405 (490)
.-.. -....++....+.|+.++|.|. |-.|++++.|| ++||+.-....+. .+. ...+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 1234455667789999999995 88999999999 9999876543322 222 1123
Q ss_pred CCCeeEEEEcCC---CCEEEEEecC-------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC----CCeEEEEe
Q 011256 406 ETPTNSVDFDHS---GSYLAVASAD-------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD----AKYIAVGS 471 (490)
Q Consensus 406 ~~~i~~i~~s~~---~~~l~~~~~d-------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~ 471 (490)
..+..|+.|+|. ..+|++|+.+ +.||.+......|..+..+..+ ..+|++++|.|+ -..||+++
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH--TDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC--CCcceeeeeccccCCceeeEEEee
Confidence 567789999975 4788988876 8899998877778888888865 889999999994 34699999
Q ss_pred CCCcEEEecCCC
Q 011256 472 MDRNLRVFGLPG 483 (490)
Q Consensus 472 ~dg~v~iw~~~~ 483 (490)
.|| |+||.+..
T Consensus 247 kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 247 KDG-VRIFKVKV 257 (361)
T ss_pred cCc-EEEEEEee
Confidence 999 99999974
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=148.65 Aligned_cols=236 Identities=18% Similarity=0.257 Sum_probs=180.7
Q ss_pred CCCCCeEEEEecCCC-----CEEEEEeCCCcEEEEeCCCC--cEE--EE-----eccCccCEEEEEEee-CCCEEEEEeC
Q 011256 185 TSKPGIVSLDIHYSK-----DVIATGGVDTNAVLFDRPSG--QIV--TT-----LSGHSKKVTSVKFVT-EGDLFLTGSA 249 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~--~~~--~~-----~~~h~~~v~~l~~~~-~~~~l~s~s~ 249 (490)
.|.-+++.+.|.|+. ++||+++ ..+++|.+... +.. .. -..+..++++..|+. +.+++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 467789999999976 3666654 47999987632 211 11 124668899999986 6779999999
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
|-+..|||++.+........+-.|..+|..++|...+ +.|+++|.||.+++||++..+.-..+.... ....+...++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC--CCCCcceeec
Confidence 9999999999863334566677899999999999765 689999999999999999877655554321 1135678889
Q ss_pred EcC-CCcEEEEEcCC-CcEEEEECCCC-ceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcc------e
Q 011256 329 FHP-DGLILGTGTSE-ALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN------F 397 (490)
Q Consensus 329 ~~~-~~~~l~~g~~d-g~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~------~ 397 (490)
|++ |.+++|+-..| ..|.|.|+|.. .++..+.+|.+.|+.++|.|. ...|+++++|. +.+||+...-. +
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence 988 55777775554 47999999875 678899999999999999996 67899999998 99999976422 2
Q ss_pred eeeecCCCCCCeeEEEEcC-CCCEEEEEecC
Q 011256 398 RSFESSDSETPTNSVDFDH-SGSYLAVASAD 427 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d 427 (490)
..+. ..+.|+.+.|++ ...+++++..+
T Consensus 330 lay~---a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 330 LAYT---AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred hhhh---ccceeeeeeecccCCCEEEEEecC
Confidence 2222 267899999996 46788887766
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4e-18 Score=142.17 Aligned_cols=239 Identities=12% Similarity=0.172 Sum_probs=175.8
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC-------CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSED-------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 303 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 303 (490)
.|.+-+|+|.+++|+.|+.+|.|.++.+.+. .....+..+++|.++|+.++|+ ..+|++|+. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3566688999999999999999999987542 1124456668999999999998 556666654 99998876
Q ss_pred CCCeE------EEEeecC-CC-CCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC
Q 011256 304 SSGIC------LTQVSDA-GT-DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 304 ~~~~~------~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 375 (490)
+.... +...... .. ...-..|+++.+.|..+-++.++.|+.++.||+++|+..+++.+|...|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54322 0011100 00 1112468899999977666666789999999999999999999999999999985556
Q ss_pred CEEEEEeCCC-EEEEECCCCcceeeeecCCCC--------CCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeee
Q 011256 376 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSE--------TPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKT 445 (490)
Q Consensus 376 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~--------~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~ 445 (490)
..+++|++|| +++||+++.+.+..+....+. ..|.+ ..-+..+|++|+.- +.+|++.. .++...
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgGp~lslwhLrs----se~t~v 242 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGGPKLSLWHLRS----SESTCV 242 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCCCceeEEeccC----CCceEE
Confidence 6788999998 999999999998888765432 23344 44567899999887 99999943 344444
Q ss_pred ecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 446 FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 446 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
|+. .+++..+.|.. +.+++++..+.|.-|.+.+
T Consensus 243 fpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 243 FPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred Eec---ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 433 45678888854 4677788777888887754
No 186
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.7e-18 Score=154.54 Aligned_cols=250 Identities=18% Similarity=0.288 Sum_probs=186.7
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEeccCccCEEEEEEeeCCCE
Q 011256 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--------S--------GQIVTTLSGHSKKVTSVKFVTEGDL 243 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~ 243 (490)
+.....|...|+++.|+|+|++||+|+.+|.|.+|... + ......+.+|...|..++|+|++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 34566788999999999999999999999999999765 2 2335567899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEee----c--CCC
Q 011256 244 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVS----D--AGT 317 (490)
Q Consensus 244 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~--~~~ 317 (490)
+++++.|+.+++||+..+ .....+..|...|..++|.|-++++++-+.|...+.+.+.....+.... . ...
T Consensus 138 l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFN 214 (434)
T ss_pred eeeeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccC
Confidence 999999999999999987 7888889999999999999999999999999877777765544333222 0 000
Q ss_pred ------------CCCCCCceEEEEcCCCcEEEEEcC----CC-----cEEEEECCC-CceeeeecCCCCCeEEEEEcC--
Q 011256 318 ------------DGRPEGYTSAAFHPDGLILGTGTS----EA-----LVKIWDVKS-QANVAKFDGHVGAVTAISFSE-- 373 (490)
Q Consensus 318 ------------~~~~~~v~~~~~~~~~~~l~~g~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~-- 373 (490)
.........++|+|+|.++++... ++ ..++|+-.. .+++..+.....+...+.|+|
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy 294 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVY 294 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeE
Confidence 001123456789999999987532 22 234454322 234444444444555555544
Q ss_pred ----------------CCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 374 ----------------NGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 374 ----------------~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
-+..++.++.+.|+|||..+..++...... |-..++.++|+++|.+|++.+.| ..+..+
T Consensus 295 ~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 295 YELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred EEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 344677888888999999998887766553 26789999999999999999999 344444
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=175.21 Aligned_cols=282 Identities=18% Similarity=0.215 Sum_probs=212.9
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|...|.|+.|...|.++++|+.|..++||...++.++..+.||.+.|+.++.+.+..++++++.|..|++|.+..+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~- 264 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG- 264 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC-
Confidence 4578899999999999999999999999999999999999999999999999999998889999999999999999887
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.++..+.+|++.|++|+|+|-. +.+.||++++||.+-...+...... ......-+.++.|...+.-+++|+.|
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~-~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPL-KFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCC-CcccccceeeeeccccccccccccCC
Confidence 7888899999999999999854 7789999999998822111111111 11122456677788888889999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
+.-..|.+..- ..+...+.-+.++.+ ..+.+++-.+. +.+|++..+...+....+ ...+..+.++|-...
T Consensus 338 ~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh--sd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 338 GEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH--SDEVYVLDVHPFNPR 409 (1113)
T ss_pred cccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc--ccceeeeeecCCCcH
Confidence 98877765321 112222222222222 23445555554 899999999887777766 567888999997655
Q ss_pred EE-EEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 421 LA-VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 421 l~-~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
++ +++.| ..||++-. +..++.+.. +.+.+...+||+||..++....-|.++|.....++.
T Consensus 410 i~msag~dgst~iwdi~e----g~pik~y~~--gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWE----GIPIKHYFI--GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeeccc----CCcceeeec--ccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 44 55666 88999832 333333332 256778889999999999998899999998765543
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=7.8e-17 Score=153.31 Aligned_cols=265 Identities=15% Similarity=0.198 Sum_probs=172.4
Q ss_pred CCeEEEEecCCCCEEEEEe-CCCcEEEEeCC-CCcE--EEEeccCccCEEEEEEeeCCCEEEEEeC-CCcEEEEeCCCCC
Q 011256 188 PGIVSLDIHYSKDVIATGG-VDTNAVLFDRP-SGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDG 262 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~ 262 (490)
+....+.++|++++|++++ .++.|.+|++. ++.. +.... ..+....+.|+|++++|++++. ++.|.+|+++..+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567889999999887664 58889999986 3433 22222 2335678999999998887764 8899999997543
Q ss_pred cc-ceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeec-CCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 263 NY-DCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSD-AGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 263 ~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
.. .....+. +.....+++++|+++++++++ .++.|.+||+.+...+..... ............+.|+|+|++++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 21 2222222 234467788999999886655 569999999986432211000 0000011446789999999999888
Q ss_pred cC-CCcEEEEECCC--C--ceeeeecCC------CCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcc----eeeeec
Q 011256 340 TS-EALVKIWDVKS--Q--ANVAKFDGH------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN----FRSFES 402 (490)
Q Consensus 340 ~~-dg~i~iwd~~~--~--~~~~~~~~~------~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~----~~~~~~ 402 (490)
+. ++.|.+||+.. + +.+..+... ......+.|+|+|++++++... + |.+|++..... +..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 3 223333211 1123468899999999998654 4 99999865432 222222
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 403 SDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 403 ~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
......+.++|+|++|++++.. +.+|.++........+..+.. .....|+.|
T Consensus 273 ---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~---g~~P~~~~~ 327 (330)
T PRK11028 273 ---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV---GQGPMWVSV 327 (330)
T ss_pred ---cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc---CCCceEEEE
Confidence 2345689999999999998763 999988644333444443332 233455554
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=160.56 Aligned_cols=259 Identities=18% Similarity=0.237 Sum_probs=185.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEE-eCCCCcEEEEeccCccCEEEEEE-ee-------CCCEEEEEeCCCcEEEE
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLF-DRPSGQIVTTLSGHSKKVTSVKF-VT-------EGDLFLTGSADKTVRVW 256 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~h~~~v~~l~~-~~-------~~~~l~s~s~dg~i~iw 256 (490)
|...+.|+.|+.+...+.+++ |..+.+| |+.+. ....+.-....|....+ -+ ..+.|+.++.||.+.|.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccccceEEEecc-CceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 444567899987777766655 4555555 44332 22222111111111111 11 23478889999999998
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
+-.. +....+..|.+.|.+-.|+|+|.-|++++.||.|++|.-. |-....+... ..+|+|++|.|+.+-+
T Consensus 91 ~k~~----rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~-----~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 91 NKSA----RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQN-----EESIRCARWAPNSNSI 160 (737)
T ss_pred cccc----hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhc-----CceeEEEEECCCCCce
Confidence 7544 5666778899999999999999999999999999999853 3222222211 2679999999987655
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
+.+ ..+.+.|=.+.....+..++.|.+-|.++.|++...++++|++|- .+|||-.. ..+.. ...++.+|++++|.
T Consensus 161 l~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~--S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 161 VFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFT--SAAEEYAITSVAFN 236 (737)
T ss_pred EEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccccc--CChhccceeeeeec
Confidence 443 346788877777777888999999999999999999999999997 99999653 33333 33347899999999
Q ss_pred CCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 416 HSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 416 ~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
|+ ..+++++.+ .+ +.. ...+.|..++||+||..++.|+..|.|.+
T Consensus 237 pd-~~~~v~S~nt~R----------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 237 PE-KDYLLWSYNTAR----------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cc-cceeeeeeeeee----------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 99 666777755 33 111 12678999999999999999999998765
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.4e-19 Score=161.13 Aligned_cols=300 Identities=20% Similarity=0.294 Sum_probs=223.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-ccCccCEEEEEEeeC--CCEEEEEeCCCcEEEEeC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd~ 258 (490)
....|++.|+.+.|+..|..|++|+.|..|.+||...+.....+ .+|...|....|.|. ..-+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 45678999999999999999999999999999999988776665 489999999999884 347999999999999887
Q ss_pred CCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCC-CCCCCceEEEEcCCC-cE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTD-GRPEGYTSAAFHPDG-LI 335 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~ 335 (490)
...+.......+..|.++|..++.-|+. .-|.+++.|+.+.-+|++.+.....+...... ...-....++.+|.. ..
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 6655445466677899999999999976 57899999999999999887665544421111 011356788999954 58
Q ss_pred EEEEcCCCcEEEEECCCCc------eeeeec------CCCCCeEEEEEcCCCCEEEEEeCC-CEEEEECCCCc-------
Q 011256 336 LGTGTSEALVKIWDVKSQA------NVAKFD------GHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLK------- 395 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~------~~~~~~------~~~~~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~------- 395 (490)
+++|+.|-.+++||.+.-. .+..+- .....|++++|+.++.-|.++..| .|++|.-..+.
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 9999999999999987532 122322 223579999999776555555555 59999433221
Q ss_pred -----ce-eeeecCCCCCCeeEEEE-cCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe
Q 011256 396 -----NF-RSFESSDSETPTNSVDF-DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 396 -----~~-~~~~~~~~~~~i~~i~~-s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 466 (490)
.. +.++.|.....|..+-| -|...|+++|+.. |.||+- +....+.-+.+. ..-|+|+.-+|--..
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K----~t~eii~~MegD--r~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK----KTGEIIRFMEGD--RHVVNCLEPHPHLPV 450 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec----chhHHHHHhhcc--cceEeccCCCCCCch
Confidence 11 22555555556777765 6778888888877 666663 445555555554 338999999999999
Q ss_pred EEEEeCCCcEEEecCCCCCCC
Q 011256 467 IAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 467 l~s~~~dg~v~iw~~~~~~~~ 487 (490)
||++|-|..|+||.-.+.+..
T Consensus 451 LAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred hhccCCccceeeecCCccccc
Confidence 999999999999987555443
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.8e-17 Score=157.83 Aligned_cols=287 Identities=15% Similarity=0.207 Sum_probs=211.5
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC-CCccc
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYD 265 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~ 265 (490)
.++.+++.|.+....-.+ .+.+|+...+.... .-..|...++|.+++|+++++++|..||.|.+|.--. .....
T Consensus 164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 567788888777666544 58888877654111 1124777799999999999999999999999996443 22224
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
....+.=|..+|++++|+++|.+|++||..|.+.+|.+.+++. ++-+ .-.++|..+.++||+.+.++...|..|
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLP----RLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLP----RLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--cccc----ccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 4556667889999999999999999999999999999999882 2221 122789999999999999999999999
Q ss_pred EEEECCCCceeeeecC-----------CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC---------
Q 011256 346 KIWDVKSQANVAKFDG-----------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD--------- 404 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~-----------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~--------- 404 (490)
.+....+.....++.+ ..+-.+.++++|--+.++..+..+ |.+||+-+...+..+....
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 9998766544444322 134567889999666677777777 9999998877665554321
Q ss_pred CCCCeeEEEEcCCCCEEEEEec--------C----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc-CC-CCeEEEE
Q 011256 405 SETPTNSVDFDHSGSYLAVASA--------D----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG-PD-AKYIAVG 470 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~--------d----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~-~~~l~s~ 470 (490)
..-.++.++.+..|+++++.-. + +++|.+.....+|.+....... |...+...++. +. ...++++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta 475 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTA 475 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEe
Confidence 1234677778888999998642 1 8999998888888877766543 34444444443 33 3378999
Q ss_pred eCCCcEEEecCCCCC
Q 011256 471 SMDRNLRVFGLPGND 485 (490)
Q Consensus 471 ~~dg~v~iw~~~~~~ 485 (490)
+.||.++||-+.+.+
T Consensus 476 ~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDS 490 (792)
T ss_pred ccCCeEEEEEEeccc
Confidence 999999999995543
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.1e-16 Score=141.51 Aligned_cols=236 Identities=18% Similarity=0.282 Sum_probs=177.5
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC--CeEEEEeCCCC
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD--NTWCFYDLSSG 306 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--g~i~iwd~~~~ 306 (490)
...+..+.|..+...|..|+.||. ++|+.+.-+ ++. ........|.-+-|+ ..+++..+.+ +.+++++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~--k~~-~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFE--KCF-SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchH--Hhh-cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 345677779888889999999984 788776532 111 111223345566665 5566655554 45999999988
Q ss_pred eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC---CCCCeEEEEEcCCCCEEEEEeC
Q 011256 307 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---HVGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~l~~~~~ 383 (490)
..+..+... ..|.++.++.+ .|++.-.+ .|+|||+++.+.+.++.. +...+.++++++.+.+++.-+.
T Consensus 79 ~~ICe~~fp------t~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 79 TTICEIFFP------TSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred ceEEEEecC------CceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 888777643 67888888754 45554443 499999999999988853 4445677777777778887544
Q ss_pred C--C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEE
Q 011256 384 D--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATC 457 (490)
Q Consensus 384 d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 457 (490)
. | |.|||+.+.+....+..| .+++.+++|+++|.+||+++.. ||||.+ ..+..+..|....-...|.+
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH--~~~lAalafs~~G~llATASeKGTVIRVf~v----~~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAH--KGPLAALAFSPDGTLLATASEKGTVIRVFSV----PEGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred CCCceEEEEEcccceeeeEEEec--CCceeEEEECCCCCEEEEeccCceEEEEEEc----CCccEeeeeeCCceeeEEEE
Confidence 3 4 999999999999999876 8899999999999999999998 999998 55666666654433567899
Q ss_pred EEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 458 VKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 458 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
++|+|++.+|++.|..++|+||.++...
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999999999997543
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=148.70 Aligned_cols=255 Identities=13% Similarity=0.153 Sum_probs=183.6
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC---Cccceeeeec-ccccceEEEEEecCCCEEEEEECCCeE
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED---GNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i 298 (490)
+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++.. ...+++.... .|...|.|++|...+.++++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345689999999999999999999999999999997652 1113333333 466899999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc-eeee--ecCCCCCeEEEEEcCC-
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAK--FDGHVGAVTAISFSEN- 374 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~--~~~~~~~i~~l~~s~~- 374 (490)
...|+++.+.+..+... ...+.|+.+..+|-.+.|++.+.+|.|.+||.+... .+.. ..........+.|+|.
T Consensus 130 I~HDiEt~qsi~V~~~~---~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANEN---NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeecccceeeeeeccc---CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999988887643 234689999999999999999999999999998654 2222 2224457788999996
Q ss_pred CCEEEEEeCCC-EEEEECCCCcc-eeeeec---C-CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeee
Q 011256 375 GYYLATAAHDG-VKLWDLRKLKN-FRSFES---S-DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 446 (490)
Q Consensus 375 ~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~---~-~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~ 446 (490)
..+|++.+..+ +.+||.++... +..... . .....-.++.|+|+|..+.+--.. -.+|++.. ..-.+..+
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S---~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS---QRCFVLKS 283 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec---ccceeEec
Confidence 55667776665 99999997643 111111 1 112234678899999888776554 45566521 11122222
Q ss_pred c----CCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 447 P----DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 447 ~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
. +.-....+.+++|..|.. +++|+++=.|++|.++..
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCC
Confidence 1 111133567788876544 999999999999999754
No 194
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-16 Score=139.99 Aligned_cols=284 Identities=18% Similarity=0.279 Sum_probs=189.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
..+.-++|++--..++++..|..|++||... +....++ .....|+|++|-|.+ ..|+.|+.. -|.||......+..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3567889998666788899999999999876 4444443 245679999999955 467777764 58999865432211
Q ss_pred e-----------eeeecccccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 266 C-----------KHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 266 ~-----------~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
. +....+| .+|++|.|.+||..+++++. |..|.|||..++..+...... ..+++-+.|+|||
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-----lgg~slLkwSPdg 250 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-----LGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-----CCceeeEEEcCCC
Confidence 1 1222344 68999999999999999876 578999999998876555221 2678899999999
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcce---------------e
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNF---------------R 398 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~---------------~ 398 (490)
.+|++++.|+..++|+...........-..+.|...+|+|.|.+|+......-++|.+.-...- .
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeec
Confidence 9999999999999996554332223333456899999999999887776665455544321100 0
Q ss_pred eeec---CC----CCCCeeEEEEcCCCCEEEEEecC----------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 399 SFES---SD----SETPTNSVDFDHSGSYLAVASAD----------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 399 ~~~~---~~----~~~~i~~i~~s~~~~~l~~~~~d----------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
.+.. .. ..+++.+++|+|.|.+|++.-.. +.+|+... .......+-+.........++|+
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~---sp~vels~cg~i~ge~P~~IsF~ 407 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK---SPPVELSYCGMIGGEYPAYISFG 407 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc---cCceEEEecccccCCCCceEEee
Confidence 0000 00 14678999999999999997554 33444311 11111111111112224456666
Q ss_pred C---CCCeEEEEeCCCcEEEecCC
Q 011256 462 P---DAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 462 ~---~~~~l~s~~~dg~v~iw~~~ 482 (490)
| +|.+|..+=..|.+.-|.+.
T Consensus 408 pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 408 PLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ecccCCcEEEEEeccCceEeeeeE
Confidence 5 67788888788888877764
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=3e-17 Score=140.46 Aligned_cols=257 Identities=17% Similarity=0.259 Sum_probs=183.7
Q ss_pred cEEEEeccCccCEEEEEEee--C-CCEEEEEeC----CCcEEEEeCCCCCc-cceeeeecccccceEEEEEecCCC----
Q 011256 220 QIVTTLSGHSKKVTSVKFVT--E-GDLFLTGSA----DKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNK---- 287 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~--~-~~~l~s~s~----dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~---- 287 (490)
+.+..+..+ -++.++.|+. + +.+|+.|+. .+.|.|-.+..... ...... ..|.-+++.+.|.|+..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCc
Confidence 334444433 3577888873 2 336888874 46777776654321 111122 36889999999999763
Q ss_pred -EEEEEECCCeEEEEeCCC--CeE--EEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCc---eeee
Q 011256 288 -YFVTASLDNTWCFYDLSS--GIC--LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQA---NVAK 358 (490)
Q Consensus 288 -~l~s~~~dg~i~iwd~~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~---~~~~ 358 (490)
.|++++ ..+++|.+.. ... ...+.......+..+++++.|+. +.+++.+++-|-+..|||+.++. ....
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 455543 4899999873 221 12223333445568899999998 77899999999999999999863 3566
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCC-CCCeeEEEEcCCC-CEEEEEecC---eEEE
Q 011256 359 FDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ETPTNSVDFDHSG-SYLAVASAD---IRVY 431 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~i~~i~~s~~~-~~l~~~~~d---i~v~ 431 (490)
+..|...|..++|...+ ..|++.+.|| +++||+|.......+..... ..+...++|++.. +|+++-..| +.|.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 77899999999999864 5788888898 99999998766444443332 6678889998764 566665444 8888
Q ss_pred EEeecCCcceEeeeecCCCCCcceEEEEEcCC-CCeEEEEeCCCcEEEecCCCCC
Q 011256 432 QVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|+. .....+..+..| .+.|++++|.|. +..|+++|+|..+.|||+....
T Consensus 272 DiR---~P~tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 272 DIR---VPCTPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred Eec---CCCcceehhhcC--cccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 884 344566667775 889999999994 5679999999999999997643
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.4e-17 Score=160.69 Aligned_cols=247 Identities=17% Similarity=0.178 Sum_probs=178.4
Q ss_pred CCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcE--EE----EeccCccCEEEEEEeeCC--CEEEEEeCCCcEEE
Q 011256 185 TSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQI--VT----TLSGHSKKVTSVKFVTEG--DLFLTGSADKTVRV 255 (490)
Q Consensus 185 ~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~h~~~v~~l~~~~~~--~~l~s~s~dg~i~i 255 (490)
.-...|+|+.|+|. .++++.|..+|.|.+||+..+.. .. ....|..+|+.+.|..+. .-|++++.||.|..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 34678999999994 56888899999999999877654 22 224689999999997644 34999999999999
Q ss_pred EeCCCCCccceeee---ec------ccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEE--Eeec-CCCCCCCC
Q 011256 256 WQGSEDGNYDCKHT---LK------DHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLT--QVSD-AGTDGRPE 322 (490)
Q Consensus 256 wd~~~~~~~~~~~~---~~------~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~ 322 (490)
|+++.-........ .. .....++++.|.+.. ..|+.|+.+|.|..-+......-. .+.. .....|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98765321111111 11 123468999998855 679999999998874433222111 1111 13446779
Q ss_pred CceEEEEcCCCcEEEEEcCCCcEEEEECC-CCceeeeecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcc--e
Q 011256 323 GYTSAAFHPDGLILGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN--F 397 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~--~ 397 (490)
+|+++.++|-+..++..+.|.+|+||... ...++..+..+...+++++|||.. ..|+++..+| |.+||+..... +
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 99999999976555554459999999988 667888888788889999999974 5666666678 99999976543 3
Q ss_pred eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 398 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
...... ....+.+.|+++|+.|++|... +.+|++
T Consensus 480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 333332 5567888899999999999988 677776
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=2.1e-15 Score=131.06 Aligned_cols=280 Identities=16% Similarity=0.300 Sum_probs=193.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC--EEEEEEeeCCCEEE-EEeCC------CcEEEEeC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFL-TGSAD------KTVRVWQG 258 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~-s~s~d------g~i~iwd~ 258 (490)
....+++|+.|...+++|..+| .+||+.+.-+.......+.+. +.-+-| ..++|+ +||.+ +.|.|||-
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 3456699999999999988776 899998754332222222222 222223 334443 34333 46999994
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
... .++..+. ...+|.++.+.+ ..+++. ..+.|.+|... +.+.+..+... ..+.++.+++-+.+..+|+
T Consensus 83 ~k~---~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~---~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 83 LKE---RCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETR---SNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ccC---cEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecc---cCCCceEeecCCCCceEEE
Confidence 332 5666654 667899999874 445554 35789999987 55555555432 2234555555444555555
Q ss_pred E-EcCCCcEEEEECCCCce--eeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcceeeeecCCCCCCeeEE
Q 011256 338 T-GTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 338 ~-g~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~~~~~~~~i~~i 412 (490)
. |..-|.|.|-|+...+. ...+..|.+.|.|++.+.+|..+|++|..| |+|||..++..+..+........|.++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 5 55679999999987655 467788999999999999999999999998 999999999999999887767889999
Q ss_pred EEcCCCCEEEEEecC--eEEEEEeecCCcce----------Ee----------eeecCCCCCcceEEEEEcCCCCeEEEE
Q 011256 413 DFDHSGSYLAVASAD--IRVYQVASVKADWN----------CI----------KTFPDLSGTGKATCVKFGPDAKYIAVG 470 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~----------~~----------~~~~~~~~~~~v~~~~~s~~~~~l~s~ 470 (490)
+|+|++.+|+++|.. ++||.+........ .+ ..+.. ..+...-++|..+.+.++..
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i 310 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAI 310 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEc--cCCCcEEEEecCCCCeEEEE
Confidence 999999999999988 88888854322111 00 01111 13455667787776677777
Q ss_pred eCCCcEEEecCC
Q 011256 471 SMDRNLRVFGLP 482 (490)
Q Consensus 471 ~~dg~v~iw~~~ 482 (490)
+.||..+=+.+.
T Consensus 311 ~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 311 CADGSYYKFKFD 322 (346)
T ss_pred EeCCcEEEEEec
Confidence 788987655554
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-16 Score=160.96 Aligned_cols=271 Identities=18% Similarity=0.236 Sum_probs=188.6
Q ss_pred EeCCCCcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCC----CccceeeeecccccceEEEEEecCCCE
Q 011256 214 FDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSED----GNYDCKHTLKDHTAEVQAVTVHATNKY 288 (490)
Q Consensus 214 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~ 288 (490)
|+. .|..+..+..|...|..++.++.. .+|++||.||+|++|+...- +..+...++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 555 578889999999999999987754 89999999999999997642 223444455546678999999999999
Q ss_pred EEEEECCCeEEEEeCCCC--eEEE-EeecCCCCCCCCCc-eEEEEcC-CCc-EEEEEcCCCcEEEEECCCCceeeeec--
Q 011256 289 FVTASLDNTWCFYDLSSG--ICLT-QVSDAGTDGRPEGY-TSAAFHP-DGL-ILGTGTSEALVKIWDVKSQANVAKFD-- 360 (490)
Q Consensus 289 l~s~~~dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~v-~~~~~~~-~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~-- 360 (490)
+++++.||.|.+.+++-. .... ...........+.+ ..-++.. .+. .++.++.-+.|..||+++.....+++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998762 1111 11001011111223 2333332 233 78888899999999999876655553
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC---CEEEEEec-C---eEEEE
Q 011256 361 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG---SYLAVASA-D---IRVYQ 432 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~---~~l~~~~~-d---i~v~~ 432 (490)
...|.|++++.+|.+.|++.|+..| +.+||+|-..++..+..+. ..++..+..+|-. .+.++++. . +.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 3457899999999999999999999 9999999998888887665 4788888887643 45555554 2 99999
Q ss_pred EeecCCcceEeee-----e----cCC----CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 433 VASVKADWNCIKT-----F----PDL----SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 433 ~~~~~~~~~~~~~-----~----~~~----~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
+..+......... + +.. .+.-......+...+.++.+|+.|+.|+.||......
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 8554322211111 0 000 0111222334444567899999999999999976543
No 199
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=2.9e-16 Score=136.74 Aligned_cols=270 Identities=16% Similarity=0.223 Sum_probs=191.2
Q ss_pred CCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccc
Q 011256 188 PGIVSLDIHYSKDVIATG-GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
+.|.-+.|..+..+++++ ..++.|.+|++...+-...+.....++.+++|+|+|+ +|.+...|-.|.||.+.+.
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~---- 124 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ---- 124 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----
Confidence 356778888887766554 6688999999998888888888889999999999996 5666777999999999884
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECC------------------------------------CeEEEEeCCCCeEE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLD------------------------------------NTWCFYDLSSGICL 309 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------------------------------------g~i~iwd~~~~~~~ 309 (490)
....+......+..++|+|+|++.+.++.- ..+.+||---...+
T Consensus 125 ~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv 204 (447)
T KOG4497|consen 125 KGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV 204 (447)
T ss_pred eeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee
Confidence 233334344567889999999988776542 12333432211111
Q ss_pred EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeee-------------------------------
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK------------------------------- 358 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~------------------------------- 358 (490)
..+. ..-++..++|+|.+++|++|+.|+.+++.+--+-+....
T Consensus 205 ~aYe------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 205 YAYE------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred eeee------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1111 115688999999999999999999988764322111100
Q ss_pred -----------------------------ec------CCCCCeEEEEEcCCCCEEEEEeCC--C-EEEEECCCCcceeee
Q 011256 359 -----------------------------FD------GHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 359 -----------------------------~~------~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~ 400 (490)
++ .....+.-++|++|..++++-.+. + +.+||+++.+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 00 112356789999999999998777 3 999999988776555
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 401 ESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
.. ..+|....|+|....|+++....++|-+.. .+......+.. .-.|..++|.-+|.+++..+.|..
T Consensus 359 iQ---k~piraf~WdP~~prL~vctg~srLY~W~p---sg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 359 IQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP---SGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hh---ccceeEEEeCCCCceEEEEcCCceEEEEcC---CCceEEecCCC--CceeeeEEecCCCcEEEEEcCCce
Confidence 44 678999999999988888877755555422 23222222222 357899999999999999998864
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7.8e-18 Score=151.44 Aligned_cols=198 Identities=22% Similarity=0.281 Sum_probs=150.3
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
.+++|+.+|..+++|+.||.++||+.++...+.....|...|.++.|+|||++|++.+.| ..+||+.+++. ++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~---~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA---ALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc---hhhhc
Confidence 789999999999999999999999998888888888899999999999999999999999 89999998862 22222
Q ss_pred c--ccccceEEEEEecCC---CEE--EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 271 K--DHTAEVQAVTVHATN---KYF--VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 271 ~--~h~~~v~~l~~~~~~---~~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
. ........+.|+.++ .++ +.....+.|..||+.....-..+...........|++++++++|++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2 233345667777666 332 233345566666654322211111111111225799999999999999999999
Q ss_pred cEEEEECCCCceeeee-cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC
Q 011256 344 LVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 392 (490)
.|.|++..+.+.++-. +.|...|+.+.|+|+.+++++.+.+. ..|..+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999888777665 45889999999999999999888775 6666554
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=154.14 Aligned_cols=203 Identities=15% Similarity=0.254 Sum_probs=165.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceE
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 278 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 278 (490)
.+.++.+++||.+.+.+. .++....+..|.+.|.|-.|+|+|.-|++++.||.|++|.-.. ....++.....+|.
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hHHHHHhhcCceeE
Confidence 457888899999999875 5777888899999999999999999999999999999998654 44455556778999
Q ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeee
Q 011256 279 AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK 358 (490)
Q Consensus 279 ~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 358 (490)
|++|.|+.+.++.+.. +.+.|=.+.....+.... .|.+-|.++.|++..+++++|++|-..++||- .|..+..
T Consensus 150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~Wk-----AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~ 222 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWR-----AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFT 222 (737)
T ss_pred EEEECCCCCceEEecC-CeEEEeecccccceeEEe-----ccCcEEEEeecCccccceeecCCceeEEeecc-cCccccc
Confidence 9999999876666533 456665555544444443 56688999999999999999999999999995 5677777
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 359 FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
-..|..+|++++|+|+ ..++.++.+.++ +..+ ..+.|..++||+||..+++|+..
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~S~nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLWSYNTAR------------FSSP-RVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred CChhccceeeeeeccc-cceeeeeeeeee------------ecCC-CccceEEEEEcCCCceeeccccC
Confidence 7789999999999999 777888877665 2222 15789999999999999999887
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=154.97 Aligned_cols=238 Identities=13% Similarity=0.221 Sum_probs=179.4
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
.-.++|++.|.|++|+.+|+.+++|+.|+.|.+|+..-...+ .+ .|++.|.|+.|+|-...|++++-. ..-+|....
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q 123 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ 123 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence 346789999999999999999999999999999986433222 22 499999999999999999998864 467898765
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-----cE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----LI 335 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~ 335 (490)
. .+... .....|.+.+|..||.+|+.|-.+|+|.+-+-.....+ .+.. ..+..++|.+++|+|.. ..
T Consensus 124 K----~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~R--pgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 124 K----SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIER--PGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred h----hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-EEeC--CCCCCCCceEEEecCCCCCCccce
Confidence 3 22221 23457889999999999999999999999865433333 3332 33556899999999953 56
Q ss_pred EEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEE
Q 011256 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 414 (490)
+++..-..++.+|.+. |+.+..-..-.-...|+++.+||.++..|+.++ +.+|- |.+-.+.++... ...|+.++.
T Consensus 196 ~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~--D~WIWtV~~ 271 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ--DSWIWTVQA 271 (1081)
T ss_pred EEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc--ceeEEEEEE
Confidence 7777777778877764 444433222333567899999999999999997 88885 555555555443 789999999
Q ss_pred cCCCCEEEEEecC--eEEEEE
Q 011256 415 DHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 415 s~~~~~l~~~~~d--i~v~~~ 433 (490)
.|++++++.|+.| +..|++
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccCCceEEEEEccCeeehhhh
Confidence 9999999999999 555554
No 203
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=2.4e-16 Score=158.69 Aligned_cols=248 Identities=16% Similarity=0.180 Sum_probs=173.6
Q ss_pred cCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCC-------cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 184 KTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
..|.+.|..++.++.. .++++|+.||+|++||...- +...++..-...+.++.+.+.++.+|+++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 3467778888888755 89999999999999996531 223344445678999999999999999999999999
Q ss_pred EeCCCC--Ccc--ceeeeeccc-ccceEEE-EEec-CCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEE
Q 011256 256 WQGSED--GNY--DCKHTLKDH-TAEVQAV-TVHA-TNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 327 (490)
Q Consensus 256 wd~~~~--~~~--~~~~~~~~h-~~~v~~l-~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (490)
.+++.. ... .+......+ .+.+..| +|.. .+. .++.+..-+.|..||++........... ...+.|+++
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~---~~hG~vTSi 1201 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ---LRHGLVTSI 1201 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC---ccccceeEE
Confidence 998762 111 111222222 2333333 3322 223 7788888899999999987766655532 233789999
Q ss_pred EEcCCCcEEEEEcCCCcEEEEECCCCceeeeec-CCCCCeEEEEEcCC---CCEEEEEeC-C-C-EEEEECCCCcceeee
Q 011256 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSEN---GYYLATAAH-D-G-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 328 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~---~~~l~~~~~-d-~-i~iwd~~~~~~~~~~ 400 (490)
+.+|-++++++|+..|.+.+||+|-+.++..+. ++..+|+.+..+|- ....++++. . + |.+|++.++.+...+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 999999999999999999999999998888875 34567888777763 356666555 3 4 999999988765555
Q ss_pred ecCC-----------------CCCCeeEEEEcCCCCEEEEEecC--eEEEEEe
Q 011256 401 ESSD-----------------SETPTNSVDFDHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 401 ~~~~-----------------~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 434 (490)
.... ..-......+...+.++.+|+.| |+.||..
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 4431 01112223344445677788877 8889864
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.3e-16 Score=156.60 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=160.1
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEec
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 284 (490)
+..|++||..... ...+..|...+.+..|+|||+.|+.++.+ ..|.+||+.++. ...+..+.+| ...++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g~---~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRGH---NGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCCc---cCceeECC
Confidence 4689999986444 55677788889999999999998887654 369999997742 2233334443 34689999
Q ss_pred CCCEEEEEE-CCCeEEE--EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE-cCCCcEEEEECCCC-ceeeee
Q 011256 285 TNKYFVTAS-LDNTWCF--YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQ-ANVAKF 359 (490)
Q Consensus 285 ~~~~l~s~~-~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~-~~~~~~ 359 (490)
+|+.|+.++ .+|.+.| ||+.++... .+.. +...+....|+|||..|+.+ ..+|...||++... .....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~-----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPS-QLTS-----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeE-eecc-----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 999888764 6776555 566666543 2321 22457789999999876654 45788888876432 222223
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecC
Q 011256 360 DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK 437 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~ 437 (490)
.+.+ .+..|+|+|++|+..+.+++.+||+.++........ ....++.|+|+|++|+.++.+ ..+|.+..
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-- 402 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVS-- 402 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEE--
Confidence 3333 467899999999988887888899988765422211 123567899999999998876 66666532
Q ss_pred CcceEeeeecCCCCCcceEEEEEcCC
Q 011256 438 ADWNCIKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~~~s~~ 463 (490)
..+.....+..+ .+.+...+|+|-
T Consensus 403 ~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCC--CCCCCCcccCCC
Confidence 234455556544 567888999884
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=2.3e-16 Score=136.94 Aligned_cols=204 Identities=16% Similarity=0.191 Sum_probs=163.5
Q ss_pred eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC-
Q 011256 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL- 303 (490)
Q Consensus 225 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~- 303 (490)
+.-...+|+|.+|++|+..++.+.....|.||.....+.++..+++..|...|++++|.|..+.|++|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334578999999999999999999999999999887778999999999999999999999999999999999999998
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCcee----eeecCCCCCeEEEEEcCCCCEEE
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV----AKFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
..+.....+. ...+....+++.|+|.++.|++|+....|.||-+.....- +.-+.+...|+++.|+|++-+|+
T Consensus 86 ~~~~Wkptlv---LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 86 SGGTWKPTLV---LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred CCCeecccee---EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 5554443333 1233478899999999999999999999999987654321 12245678899999999999999
Q ss_pred EEeCCC-EEEEECC-----C-------------CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 380 TAAHDG-VKLWDLR-----K-------------LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 380 ~~~~d~-i~iwd~~-----~-------------~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+|+.|+ .+||..- . +..+..+. ...+.+..+.|+|+|..|+..+.| +.+-+.
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 999998 8888531 1 11122222 236789999999999999999888 555554
No 206
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.74 E-value=2.2e-16 Score=138.28 Aligned_cols=247 Identities=23% Similarity=0.394 Sum_probs=175.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEeccCc------------cCEEEEEEeeCCC--EEEEE
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHS------------KKVTSVKFVTEGD--LFLTG 247 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~--~l~s~ 247 (490)
.+-|.++.|...|.+|+||..+|.|.+|...... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568999999999999999999999999654322 334455553 4588999988665 67778
Q ss_pred eCCCcEEEEeCCCCCccc--------------------------------eeeee-cccccceEEEEEecCCCEEEEEEC
Q 011256 248 SADKTVRVWQGSEDGNYD--------------------------------CKHTL-KDHTAEVQAVTVHATNKYFVTASL 294 (490)
Q Consensus 248 s~dg~i~iwd~~~~~~~~--------------------------------~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~ 294 (490)
+.|.+|++|.+...+... +.+.+ ..|..-|++|.++.|...++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999865432111 11111 2578889999999999888886 5
Q ss_pred CCeEEEEeCCCCeEEEEee---cCCCCCCCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceee----ee-------
Q 011256 295 DNTWCFYDLSSGICLTQVS---DAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVA----KF------- 359 (490)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~----~~------- 359 (490)
|=.|.+|+++-...-..+. +.....-..-|++..|||. .++|+..+..|+|++.|++...... .+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999987544333222 2211122346889999994 5788888999999999998543211 11
Q ss_pred -----cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECC-CCcceeeeecCCC-------------CCCeeEEEEcCCCCE
Q 011256 360 -----DGHVGAVTAISFSENGYYLATAAHDGVKLWDLR-KLKNFRSFESSDS-------------ETPTNSVDFDHSGSY 420 (490)
Q Consensus 360 -----~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~-~~~~~~~~~~~~~-------------~~~i~~i~~s~~~~~ 420 (490)
.+--..|..+.|+++|+|+++-..-.|++||+. ..+++.+++.+.. -..-..++|+.++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 111246889999999999999877789999994 4566666665432 112356789999999
Q ss_pred EEEEecC--eEEEEEe
Q 011256 421 LAVASAD--IRVYQVA 434 (490)
Q Consensus 421 l~~~~~d--i~v~~~~ 434 (490)
+++|+.. .++|+..
T Consensus 344 v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLA 359 (433)
T ss_pred EecccccceEEEecCC
Confidence 9999988 8898854
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.6e-17 Score=150.08 Aligned_cols=219 Identities=21% Similarity=0.324 Sum_probs=164.9
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-ccCccCEEEEEEee--CCCEEEEEeCCCcEEEEe
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd 257 (490)
....+|.+-|+|+.|+.+|.+|++|+.|-.+.|||....+++..+ .+|...|.++.|.| +..++++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 456789999999999999999999999999999999888887766 58999999999998 456899999999999999
Q ss_pred CCCCC-------ccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecC-----CCCCCCCCc
Q 011256 258 GSEDG-------NYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDA-----GTDGRPEGY 324 (490)
Q Consensus 258 ~~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v 324 (490)
+.... .......+..|...|..|+..|++ +.|.+++.||+|+-+|++....-..-... .....--..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 97521 124455667899999999999998 78999999999999999874321110000 000111346
Q ss_pred eEEEEcC-CCcEEEEEcCCCcEEEEECCCC--------c----------eeeeec-CCC-----------CCeEEEEEcC
Q 011256 325 TSAAFHP-DGLILGTGTSEALVKIWDVKSQ--------A----------NVAKFD-GHV-----------GAVTAISFSE 373 (490)
Q Consensus 325 ~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~--------~----------~~~~~~-~~~-----------~~i~~l~~s~ 373 (490)
.|+.++| +..+|++|+.|-..++||.+.. . ++.-+. +|. ..++.+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 7899999 5589999999999999995321 1 122221 111 1256789999
Q ss_pred CCCEEEEEeCCC-EEEEECCCCcceee
Q 011256 374 NGYYLATAAHDG-VKLWDLRKLKNFRS 399 (490)
Q Consensus 374 ~~~~l~~~~~d~-i~iwd~~~~~~~~~ 399 (490)
||.-|++.-.+. |++||+...+....
T Consensus 284 NGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred CCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 998777766554 99999987665433
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=141.37 Aligned_cols=281 Identities=14% Similarity=0.215 Sum_probs=201.1
Q ss_pred CCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 186 SKPGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
+...-+.|..+|||++ +++|...-.|++||+..-.+...-.-....|.-.-.+.|-..++.-..|.+|.+..-..-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~--- 126 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR--- 126 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe---
Confidence 3445688999999995 567778899999999765443322222333444444545555666677888876543221
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
...+. -...-..|+++.-..-|++++....|+-++++.|..+..+... ...++++.+++-..+|++|+.+|.
T Consensus 127 --hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~-----~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 127 --HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD-----SGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred --eeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccc-----cccceeeeecCccceEEecccCce
Confidence 11111 1112345666654555666666678999999999988877643 277999999999999999999999
Q ss_pred EEEEECCCCceeeeec------CCCC-----CeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEE
Q 011256 345 VKIWDVKSQANVAKFD------GHVG-----AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~------~~~~-----~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 412 (490)
|.+||.+....+.++. .|.+ .|+++.|+.+|-.+++|+..| +.|||+|..+++..- .+....+|..+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l 277 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKL 277 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeee
Confidence 9999999877666653 2333 499999999999999999999 999999998876543 44557889999
Q ss_pred EEcCC--CCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 413 DFDHS--GSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 413 ~~s~~--~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.|.+. +..+++.... ++||+- ..+........ ...++.+|+-|++.+++++..++.+..|-++.-.
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~----~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDE----CTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cccccCCCceEEecchHHhhhccc----ccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 99776 4556665555 999996 33444443333 4568999999999999999999999888877643
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.7e-17 Score=144.75 Aligned_cols=194 Identities=22% Similarity=0.349 Sum_probs=152.0
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEe
Q 011256 233 TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312 (490)
Q Consensus 233 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 312 (490)
.+++|+.+|..|++|+.||++|||+.... ..+.....|...|.+|.|+|||++|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 68899999999999999999999997665 5566667899999999999999999999999 9999999999776665
Q ss_pred ecCCCCCCCCCceEEEEcCCC-----cEEEEEcCCCcEEEEECCCCce-----eeeecCCCCCeEEEEEcCCCCEEEEEe
Q 011256 313 SDAGTDGRPEGYTSAAFHPDG-----LILGTGTSEALVKIWDVKSQAN-----VAKFDGHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
.. ...+..+..+.|+.|+ .+++.-...+.|+.||+..... ..+.......|++++.+++|++++.|+
T Consensus 224 t~---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 224 TP---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred CC---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 53 2333556777888877 3444444556777777643211 111122234799999999999999999
Q ss_pred CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEe
Q 011256 383 HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 383 ~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 434 (490)
.+| |-|++..+.+..+.++. .|...|+.+.|+|+.++++..+.+ ..|..+.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999 99999998887766654 346799999999999999987777 6666663
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-16 Score=146.99 Aligned_cols=241 Identities=20% Similarity=0.341 Sum_probs=160.1
Q ss_pred EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee-cccccceEEEEEecC--CCEEEEEECCCeE
Q 011256 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDHTAEVQAVTVHAT--NKYFVTASLDNTW 298 (490)
Q Consensus 222 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~s~~~dg~i 298 (490)
.+.+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-.. +.++.+ .+|...|.++.|-|. +..+++|..|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4578899999999999999999999999999999998754 444444 489999999999984 5689999999999
Q ss_pred EEEeCCCCeEEE-----EeecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCcee-------e---eecCC
Q 011256 299 CFYDLSSGICLT-----QVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANV-------A---KFDGH 362 (490)
Q Consensus 299 ~iwd~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~-------~---~~~~~ 362 (490)
++||+...+.-. .....-...|...|.-++..|++ ..+.++++||+|+-+|++..... . .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 999998522110 00001123455778889999988 89999999999999999874211 1 11122
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcc-eeeeecCCC--CCCeeEEE-EcCCCCEEEEEecCeEEEEEeec
Q 011256 363 VGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN-FRSFESSDS--ETPTNSVD-FDHSGSYLAVASADIRVYQVASV 436 (490)
Q Consensus 363 ~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~-~~~~~~~~~--~~~i~~i~-~s~~~~~l~~~~~di~v~~~~~~ 436 (490)
.-...|+.++|. ..+|++|+.+- .++||.|.... ...-..... .....|+. |+|.+. ..
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn----------- 264 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KN----------- 264 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cC-----------
Confidence 235678999996 67888888887 99999654322 111100000 00111111 222211 00
Q ss_pred CCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 011256 437 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 487 (490)
..+..... ...++.+.|+|+|.-|+..-..-.|++|++..++.|
T Consensus 265 -~~gn~~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 265 -SQGNLDRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -cccccccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 00000000 123567889999887666555567999999877654
No 211
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=1.1e-15 Score=130.90 Aligned_cols=227 Identities=17% Similarity=0.290 Sum_probs=166.5
Q ss_pred CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCE-EEEEECC-------CeEEEEeCCCCeEEEE------eec
Q 011256 249 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLD-------NTWCFYDLSSGICLTQ------VSD 314 (490)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d-------g~i~iwd~~~~~~~~~------~~~ 314 (490)
.|+.|.+.+++.++..-....|..|.+.|+.|+-+|-... |+++..+ -.+.||.+........ +..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3788998888876655556677788999999999997654 4444332 2477898865432210 100
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce-eeeec-----CCCCCeEEEEEcC--CCCEEEEEeCCCE
Q 011256 315 AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKFD-----GHVGAVTAISFSE--NGYYLATAAHDGV 386 (490)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~--~~~~l~~~~~d~i 386 (490)
. ...+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+. ++....++-+|+| +|+.+++.++.++
T Consensus 118 L-dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 118 L-DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred C-CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 0 112335789999999999888876 78899999987755 33332 2455678889998 6889999888889
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEE-EecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV-ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~-~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 463 (490)
..||+|+.+....+... |...+..+.|.|+.+++++ ++.| ++|||.. .....+..+.+| ...|.++.|+|.
T Consensus 196 ~~~D~RT~~~~~sI~dA-Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~H--sHWvW~VRfn~~ 269 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDA-HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGH--SHWVWAVRFNPE 269 (370)
T ss_pred EEEEccchhhhcchhhh-hcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCC--ceEEEEEEecCc
Confidence 99999998887777653 3567999999999877555 4555 9999984 344566677776 668999999994
Q ss_pred -CCeEEEEeCCCcEEEecCCC
Q 011256 464 -AKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 464 -~~~l~s~~~dg~v~iw~~~~ 483 (490)
.++|++||.|..|.+|-..+
T Consensus 270 hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cceEEEecCCCceeEEEeccc
Confidence 46788999999999997654
No 212
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=132.74 Aligned_cols=190 Identities=17% Similarity=0.288 Sum_probs=146.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 011256 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 319 (490)
Q Consensus 242 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 319 (490)
..++++...|.|++||..++ ..+..++++...++.+.|.. ....+.+|+.||+|++||++.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 46888888999999999886 67778888999999999976 4578999999999999999988776666533221
Q ss_pred CCCCceEEEEcCCCcEEEEEcC----CCcEEEEECCCCce-eeee-cCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEEC
Q 011256 320 RPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQAN-VAKF-DGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~-~~~~-~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~ 391 (490)
..+..|++....++++++|+. +-.|.+||+|..+. +..+ ..|..-|+++.|+|+ .++|++||.|| |.|||+
T Consensus 117 -~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 117 -GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred -CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 256788888888899999864 66899999998765 5554 569999999999995 78999999999 999999
Q ss_pred CCCcceee-eecCCCCCCeeEEEEcCCC--CEEEEEecC-eEEEEEeec
Q 011256 392 RKLKNFRS-FESSDSETPTNSVDFDHSG--SYLAVASAD-IRVYQVASV 436 (490)
Q Consensus 392 ~~~~~~~~-~~~~~~~~~i~~i~~s~~~--~~l~~~~~d-i~v~~~~~~ 436 (490)
.....--. .....+...|.++.|..++ ++....... ..+|++...
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 86532111 1112235679999999887 544444444 999998543
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=3.2e-15 Score=130.29 Aligned_cols=273 Identities=13% Similarity=0.210 Sum_probs=186.0
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCccceeeee
Q 011256 192 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
-+.|||+|+++|+.+.- .+.|-|..+-+..+.+. .-..|.-+.|..|..+ |.....|+.|.+|++... +-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEe
Confidence 46799999999998765 78888887766544443 2456888999888775 455567889999999775 455566
Q ss_pred cccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC--------
Q 011256 271 KDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------- 341 (490)
Q Consensus 271 ~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------- 341 (490)
.....++.++.|+|+|+ .+.+...|-.|.+|.+.+.......-.. ..+..++|+|||++.+..+.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK------~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK------TNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc------cCceeEEECCCCceeeeeecccHHHHHH
Confidence 67778999999999996 4556677999999999987765443221 44578888888887766542
Q ss_pred ----------------------------CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC
Q 011256 342 ----------------------------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 342 ----------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 392 (490)
+..+.+||.--.-.+..+. ..-.+..+.|+|.+++|++|+.|+ ++|.+--
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhcee
Confidence 1223444422111122222 224688999999999999999997 7664421
Q ss_pred CCcc------------------------------------------------------------eeeeec----CCCCCC
Q 011256 393 KLKN------------------------------------------------------------FRSFES----SDSETP 408 (490)
Q Consensus 393 ~~~~------------------------------------------------------------~~~~~~----~~~~~~ 408 (490)
+.+. +..... ......
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 1100 000000 011234
Q ss_pred eeEEEEcCCCCEEEEEecC----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 409 TNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+.-++|++|..|+++-.+. +-+|++. ..+....+. ...+|....|+|....|+.+.....+++|...+
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq----~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQ----NLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEech----hhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 6779999999999998877 6677762 222222221 256899999999988888887778899998765
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.70 E-value=1e-13 Score=131.69 Aligned_cols=276 Identities=16% Similarity=0.191 Sum_probs=175.4
Q ss_pred CEE-EEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceE
Q 011256 200 DVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 278 (490)
Q Consensus 200 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 278 (490)
+++ ++-..+|.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+. +.+.++... ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G-~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG-GNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-SEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-CCcc
Confidence 444 45567899999999999999999865554455789999999999999999999999987 566666543 3468
Q ss_pred EEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCC--CCCCCceEEEEcCCCcEEEEE-cCCCcEEEEECCCCc
Q 011256 279 AVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQA 354 (490)
Q Consensus 279 ~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~ 354 (490)
+++++++|+++++++ .++.+.++|.++.+.+..+...... .....+..+..+|....+++. -..+.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 899999999998776 5899999999999998887643211 133467778888887755554 445889888987654
Q ss_pred eee-eecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecC----------------------------
Q 011256 355 NVA-KFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESS---------------------------- 403 (490)
Q Consensus 355 ~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~---------------------------- 403 (490)
.+. .............|+|++++++++... . |-++|..+.+....+...
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 332 222234567889999999988876544 3 778887665432211100
Q ss_pred -------------C-----------CCCCeeEEEEcCCCCEEEEE---ecC---eEEEEEeecCCcceEeeeecCCCCCc
Q 011256 404 -------------D-----------SETPTNSVDFDHSGSYLAVA---SAD---IRVYQVASVKADWNCIKTFPDLSGTG 453 (490)
Q Consensus 404 -------------~-----------~~~~i~~i~~s~~~~~l~~~---~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~ 453 (490)
. ..+...-+..+|+++++.+. +.+ +.|+|. .+......+.... ..
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~----~tl~~~~~i~~~~-~~ 316 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDK----KTLKVVKTITPGP-GK 316 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEEC----CGTEEEE-HHHHH-T-
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEEC----cCcceeEEEeccC-CC
Confidence 0 00112445668999999998 444 888887 4455555554321 22
Q ss_pred ceEEEEEcCCCCeEEEEeCCC--cEEEecCCCC
Q 011256 454 KATCVKFGPDAKYIAVGSMDR--NLRVFGLPGN 484 (490)
Q Consensus 454 ~v~~~~~s~~~~~l~s~~~dg--~v~iw~~~~~ 484 (490)
.+..+.|++||+++..+..++ .|.|||..+-
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 489999999999877665544 5999998764
No 215
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=4e-13 Score=127.94 Aligned_cols=279 Identities=14% Similarity=0.255 Sum_probs=185.7
Q ss_pred EEEEeCC----CcEEEEeC--CCCcEE--EEeccCccCEEEEEEeeCCCEEEEEeC----CCcEEEEeCCCC-Cccceee
Q 011256 202 IATGGVD----TNAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVTEGDLFLTGSA----DKTVRVWQGSED-GNYDCKH 268 (490)
Q Consensus 202 l~~~~~d----g~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~----dg~i~iwd~~~~-~~~~~~~ 268 (490)
+++|+.. +.|++|++ .++++. ..+. .......++++|++++|+++.. +|.|..|.+... +.+..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455555 67888877 444442 2222 2344567889999999998877 578999998775 4555555
Q ss_pred eecccccceEEEEEecCCCEEEEEEC-CCeEEEEeCCC-CeEEEEeec--------CCCCCCCCCceEEEEcCCCcEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSS-GICLTQVSD--------AGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
...........++++|++++++++.. +|.+.++++.. +........ ...........++.++|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 55544556778999999999999875 89999999987 333322110 000112245789999999998877
Q ss_pred EcC-CCcEEEEECCCCc--ee--eeec-CCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECC--CCc--ceeeeecC---
Q 011256 339 GTS-EALVKIWDVKSQA--NV--AKFD-GHVGAVTAISFSENGYYLATAAHDG--VKLWDLR--KLK--NFRSFESS--- 403 (490)
Q Consensus 339 g~~-dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~--~~~--~~~~~~~~--- 403 (490)
... ...|.+|++.... .. ..+. ........+.|+|+++++++..+.. |.+|++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 643 3479999987654 21 2222 2345678999999999998887764 9999888 332 22223221
Q ss_pred -CCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe-CCCcEEE
Q 011256 404 -DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRV 478 (490)
Q Consensus 404 -~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~i 478 (490)
........+.++|+|++|+++... |.+|+++........+..+... ......+.++|+|++|++++ .++.|.+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 112257889999999999998765 9999996544445555555432 34578999999999999887 5678999
Q ss_pred ecCCC
Q 011256 479 FGLPG 483 (490)
Q Consensus 479 w~~~~ 483 (490)
|+++.
T Consensus 319 f~~d~ 323 (345)
T PF10282_consen 319 FDIDP 323 (345)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 98853
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.7e-15 Score=129.56 Aligned_cols=236 Identities=19% Similarity=0.316 Sum_probs=164.1
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeec-ccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCe
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGI 307 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 307 (490)
..+..++|++.-..|+++..|-+|++|+-.. .+...++ .....|+|++|-|.+ ..|+.|+. +-|.+|......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss----t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC----CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 4577889998777799999999999998765 3333333 234579999999976 45666655 568999765322
Q ss_pred EEEEe---------ecCCCCCCCCCceEEEEcCCCcEEEEEcC-CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCE
Q 011256 308 CLTQV---------SDAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 377 (490)
Q Consensus 308 ~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 377 (490)
..... ......+| ..|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.|||||.+
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 11110 00112234 78999999999999998875 568999999998877665445678999999999999
Q ss_pred EEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEe-----------e
Q 011256 378 LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI-----------K 444 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~-----------~ 444 (490)
|+++.-|+ .++|.............. .+.|...+|+|+|++|+..... -++|.+....+..... .
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred EEEecccceeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeec
Confidence 99999997 899965543333333333 4589999999999987766655 7777764322221111 1
Q ss_pred eecCC---C----CCcceEEEEEcCCCCeEEEEeCC
Q 011256 445 TFPDL---S----GTGKATCVKFGPDAKYIAVGSMD 473 (490)
Q Consensus 445 ~~~~~---~----~~~~v~~~~~s~~~~~l~s~~~d 473 (490)
.+... . -.+.+.+++|.|.|.+|++.-..
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 11100 0 14568899999999999986543
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.3e-15 Score=147.69 Aligned_cols=214 Identities=16% Similarity=0.139 Sum_probs=148.8
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcE--EEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEE-
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW- 256 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw- 256 (490)
..|...+.+..|+|+|+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|+.++ .+|.+.||
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3456789999999999999887653 3699999987754 3334444 34689999999887764 68877666
Q ss_pred -eCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 257 -QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 257 -d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
|+.++ ....+..+...+....|+|+|+.|+.++ .+|...+|++.... ....+. . .. .+..|+|||
T Consensus 277 ~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~---~---~~--~~~~~SpDG 344 (429)
T PRK01742 277 MGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG---G---RG--YSAQISADG 344 (429)
T ss_pred EECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec---C---CC--CCccCCCCC
Confidence 55442 2344556677788999999999777655 57888888764322 122221 1 11 357899999
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEEC--CCCcceeeeecCCCCCCee
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL--RKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~--~~~~~~~~~~~~~~~~~i~ 410 (490)
+.|+.++.++ +.+||+.+++........ ....+.|+|||++|+.++.++ +.+|++ .++.....+..+ .+.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~ 419 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVK 419 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCC
Confidence 9998887765 666999888654332222 345678999999999998876 777765 345666666543 45678
Q ss_pred EEEEcCC
Q 011256 411 SVDFDHS 417 (490)
Q Consensus 411 ~i~~s~~ 417 (490)
..+|+|-
T Consensus 420 ~p~wsp~ 426 (429)
T PRK01742 420 FPAWSPY 426 (429)
T ss_pred CcccCCC
Confidence 8888874
No 218
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5e-16 Score=142.00 Aligned_cols=260 Identities=19% Similarity=0.263 Sum_probs=191.1
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC--CEEEEEECCCe
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNT 297 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~ 297 (490)
.+...+..|.+.|..+.|+..|..|++|+.|..|.+||..... ..+.-..+|...|..-.|-|.. ..+++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3445678899999999999999999999999999999998763 2333345899999888898854 68999999999
Q ss_pred EEEEeCCCCeEEE-EeecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCceeeee---cCCCC---CeEEE
Q 011256 298 WCFYDLSSGICLT-QVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKF---DGHVG---AVTAI 369 (490)
Q Consensus 298 i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~---~i~~l 369 (490)
+++=.+.....+. ... ...|.+.|.-++.-|+. .-|.+++.|+.+.-+|++.+.+...+ ..+.. ....+
T Consensus 211 vr~s~i~~t~~~e~t~r---l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKR---LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred eeeeeeccccceeccee---cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 9998765443333 332 33566889999999954 67889999999999999987554433 22223 56788
Q ss_pred EEcCC-CCEEEEEeCCC-EEEEECCCCcce------eeeecC----CCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecC
Q 011256 370 SFSEN-GYYLATAAHDG-VKLWDLRKLKNF------RSFESS----DSETPTNSVDFDHSGSYLAVASADIRVYQVASVK 437 (490)
Q Consensus 370 ~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~------~~~~~~----~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~ 437 (490)
+..|- .+.+++++.+. +++||.+..... ..+-.+ .....|++++|+.++.-|.++..|..||-+....
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 88885 45889999988 999998864322 222211 2245799999998877777776664444443322
Q ss_pred Ccc----------eEeee-ecCCCCCcceEEEE-EcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 438 ADW----------NCIKT-FPDLSGTGKATCVK-FGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 438 ~~~----------~~~~~-~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
..+ ..++. +++|.....|.++- |.|...|+++|++-|.|.||+-.++
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 222 23333 77887777788885 5788999999999999999997654
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=4.2e-14 Score=123.04 Aligned_cols=234 Identities=16% Similarity=0.260 Sum_probs=165.8
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeeccccc--ceEEEEEecCCCEEEE-EECC------CeEEEE
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA--EVQAVTVHATNKYFVT-ASLD------NTWCFY 301 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s-~~~d------g~i~iw 301 (490)
...+++|+.|...+++|..+| .+||+.+.- +.......+.+ .+.-|-| ..++++. ||.+ ..+.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~---ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPF---KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCch---hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 355699999988888888766 799988652 22111111222 2222323 2445544 3333 469999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC-CCceeeeecCC--CCCeEEEEEcCCCCEE
Q 011256 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-SQANVAKFDGH--VGAVTAISFSENGYYL 378 (490)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~l~~s~~~~~l 378 (490)
|-....++..+... .+|.++.+.++ .|++. ..+.|++|... +.+.++.+... .....+++-..+..+|
T Consensus 81 DD~k~~~i~el~f~------~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 81 DDLKERCIIELSFN------SEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ecccCcEEEEEEec------cceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 98778888877654 78999999876 34443 35789999987 45666666432 2334444444445566
Q ss_pred EEEeCC-C-EEEEECCCCcc--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCC
Q 011256 379 ATAAHD-G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 379 ~~~~~d-~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
+.-+.. | |.|-|+...+. ...+..| ...|.+++++.+|..+|++|.. |+||+. .++..+..+.....
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt----~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATASTKGTLIRIFDT----EDGTLLQELRRGVD 225 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEeccCcEEEEEEEc----CCCcEeeeeecCCc
Confidence 655554 5 99999987665 3445554 8899999999999999999998 999997 56667777766556
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...|.+++|||++.+|+++|+.|+|+||.+....
T Consensus 226 ~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred hheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 7889999999999999999999999999998754
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.1e-14 Score=137.94 Aligned_cols=233 Identities=12% Similarity=0.111 Sum_probs=152.1
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCccceeeeecccccceEEEEEecC
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
..|.++|...... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.++. ...+..+.+ .+....|+|+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~---~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPR---HNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCC---CcCCeEECCC
Confidence 3688888864433 344456678999999999998886542 3578999987642 222333333 3456899999
Q ss_pred CCEEEEE-ECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC-C--cEEEEECCCCceeeee
Q 011256 286 NKYFVTA-SLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-A--LVKIWDVKSQANVAKF 359 (490)
Q Consensus 286 ~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~ 359 (490)
|+.|+.. +.+| .|++||+.++........ ...+....|+|||+.|+..+.+ | .|+++|+.++... .+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l 326 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI 326 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee
Confidence 9988765 4454 588999988765433221 2456789999999988766543 4 4555577666443 33
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEE
Q 011256 360 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 432 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 432 (490)
...........|+|+|++|+..+.+ + |.+||+.++... .+.. ........|+|||++|+.++.+ ..++-
T Consensus 327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3334456678999999998876654 2 889999877543 3322 1223467899999999998876 22333
Q ss_pred EeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 433 VASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
++. .......+..+ .+.+...+|+|
T Consensus 403 ~~~---~G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 403 VST---DGRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred EEC---CCCCeEECccC--CCCcCCcccCC
Confidence 321 22333444443 55677888887
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.3e-14 Score=127.90 Aligned_cols=264 Identities=18% Similarity=0.218 Sum_probs=186.6
Q ss_pred CCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCcEEEE------eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 188 PGIVSLDIHYSKD--VIATGGVDTNAVLFDRPSGQIVTT------LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 188 ~~I~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~------~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
..|+.++|.-+++ .+...+.+..+..+.......... .....++|..+... ...|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 3566677765543 555555666677776665544333 33455667666553 3468888899999999987
Q ss_pred CCCc-cceeeeecccccceEEEEEecCCCE-EEEEECC--CeEEEEeCCCCeEEEEeecCCCC----CCCCCceEEEEcC
Q 011256 260 EDGN-YDCKHTLKDHTAEVQAVTVHATNKY-FVTASLD--NTWCFYDLSSGICLTQVSDAGTD----GRPEGYTSAAFHP 331 (490)
Q Consensus 260 ~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~ 331 (490)
.+.. ......+..+ ..+..+.-++...+ +++||.. ..+.+||++..+.+..-...... .-+-.++++.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 5321 0222222222 45666666665554 5558888 78999999998766655432211 1124567888988
Q ss_pred C--CcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceee-eecCCCC
Q 011256 332 D--GLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS-FESSDSE 406 (490)
Q Consensus 332 ~--~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~-~~~~~~~ 406 (490)
. ...|++++.-+.|++||.+.+ +++..+.-...+|+++...|.|+++++|...+ +..||++.++.... +... .
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--t 290 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--T 290 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc--c
Confidence 7 889999999999999999876 67888887888999999999999999999888 99999999887766 4443 7
Q ss_pred CCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC
Q 011256 407 TPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 463 (490)
+.|.++..+|.++++++++-| ++||++.+ ...+..... ...++++.+.++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt----rkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT----RKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc----chhhhhhhh---hccccEEEecCC
Confidence 889999999999999999999 99999833 223322222 445667766543
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=2.6e-16 Score=152.44 Aligned_cols=241 Identities=19% Similarity=0.326 Sum_probs=179.7
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
+.++.+.+|..+|.|+.|...|.++++|+.|..|+||..++. .+.....||.+.|+.++.+.++..+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 334566799999999999999999999999999999998876 88999999999999999999899999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeee---ec-CCCCCeEEEEEcCCC
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK---FD-GHVGAVTAISFSENG 375 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~-~~~~~i~~l~~s~~~ 375 (490)
+|.+..+..+..+. +|.+.|++++|+|-. +.+.||++++||.+-.-.+.. .+ ....-+.++.|..++
T Consensus 258 vWrl~~~~pvsvLr-----ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLR-----GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred EEecCCCchHHHHh-----ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccc
Confidence 99999998887765 667999999999954 678899999999882111111 01 123467788888889
Q ss_pred CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC-CCEEEEEecC--eEEEEEeecCCcceEeeeecCCCC
Q 011256 376 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 376 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~-~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
.-+.+++.++ -..|.+.....- ...+.-+.++.+ ..+.+++-.+ +.+|++ ..+.......+|
T Consensus 329 ~~f~Tgs~d~ea~n~e~~~l~~~--------~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl----~~g~l~H~l~gh-- 394 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEFEQLAWR--------SNLLIFVTRSSDLSSIVVTARNDHRLCVWNL----YTGQLLHNLMGH-- 394 (1113)
T ss_pred cccccccCCcccccchhhHhhhh--------ccceEEEeccccccccceeeeeeeEeeeeec----ccchhhhhhccc--
Confidence 9999999987 666655432111 001111111111 1344444444 777776 445555556565
Q ss_pred CcceEEEEEcCCC-CeEEEEeCCCcEEEecCCCCCC
Q 011256 452 TGKATCVKFGPDA-KYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 452 ~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
...+..+.++|-. ....+++.||...|||+-.+.+
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 6678889999954 4566899999999999977654
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=2.8e-14 Score=132.24 Aligned_cols=241 Identities=17% Similarity=0.202 Sum_probs=155.6
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE----EE--EeccCccCEEEEEE-----eeCCCEEEEEeCCCcEEEEeC
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI----VT--TLSGHSKKVTSVKF-----VTEGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~--~~~~h~~~v~~l~~-----~~~~~~l~s~s~dg~i~iwd~ 258 (490)
++...++-.|++|+..- ...+++|+...+.. +. .+.+ ...+|-.| .+.+--|+.|-.-|.|.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 34444555566665543 34688888763221 11 2222 12233344 234556788888899998886
Q ss_pred CCCCccceeeee--cccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 259 SEDGNYDCKHTL--KDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 259 ~~~~~~~~~~~~--~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
.... ...+... ......|+|+.|-|.+ ..|+++-.+|.+++||.+.. .. ..-.+....+++..
T Consensus 203 ~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~------~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 203 INFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CG------ATAPSYQALKDGDQ 268 (636)
T ss_pred hhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------cc------CCCCcccccCCCCe
Confidence 5521 1111100 1133689999999866 46777788999999997210 00 11122333446666
Q ss_pred EEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEE
Q 011256 336 LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~ 414 (490)
+......+. .+..++..+....+.|+.++|+|||++|++.+.|| ++|||..+.+........ -+...|++|
T Consensus 269 f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcW 340 (636)
T KOG2394|consen 269 FAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCW 340 (636)
T ss_pred eEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEE
Confidence 655432221 12245555555567999999999999999999999 999999987766555443 567899999
Q ss_pred cCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 415 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 415 s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
+|||+||++|+.| +.||.+ ...+.+..- +.|...|..|+|.
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf----~erRVVARG--qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSF----EERRVVARG--QGHKSWVSVVAFD 383 (636)
T ss_pred cCCccEEEecCCcceEEEEEe----ccceEEEec--cccccceeeEeec
Confidence 9999999999999 999998 445555544 4458899999887
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.7e-13 Score=134.99 Aligned_cols=232 Identities=16% Similarity=0.180 Sum_probs=154.9
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCccceeeeecccccceEEEEEecC
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
..|+++|.. +.....+..|...+.+..|+|||+.|+..+. +..|.+||+.++. ...+..+.+.+.+..|+|+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCC
Confidence 478888875 4555666678889999999999998887764 4689999997752 2234445667788999999
Q ss_pred CCEEE-EEECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--cEEEEECCCCceeeee
Q 011256 286 NKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKF 359 (490)
Q Consensus 286 ~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~ 359 (490)
|+.|+ +.+.++. |++||+.++.... +.. +........|+|||+.|+..+. +| .|+++|+..+... .+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~-----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l 329 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTD-----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI 329 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEE-ccC-----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee
Confidence 98775 5555554 7778988876533 321 1234567899999998877653 33 6888898766543 33
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC------eE
Q 011256 360 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IR 429 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~ 429 (490)
..+.+.+....|+|+|++|+..+.+ + |.+||+.... ...+.. ...+..+.|+|+|+.|+..+.+ ..
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 3344556778999999999887654 2 8888975543 233322 2346778999999998876543 25
Q ss_pred EEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 430 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
+|.++...... ..+.. .+.+...+|+|
T Consensus 406 L~~~dl~g~~~---~~l~~---~~~~~~p~Wsp 432 (435)
T PRK05137 406 LYTVDLTGRNE---REVPT---PGDASDPAWSP 432 (435)
T ss_pred EEEEECCCCce---EEccC---CCCccCcccCC
Confidence 66654322222 22221 23455667776
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=4.2e-15 Score=137.59 Aligned_cols=171 Identities=20% Similarity=0.298 Sum_probs=130.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEec----cCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCC----------
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSED---------- 261 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~---------- 261 (490)
+.+--+..|-.-|.|.++|....+..+.+. .....|+|+.|-|.++ .|+.+-.+|.+.+||....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567778888999998865432211111 1236799999998554 6777788999999974321
Q ss_pred ----Ccc-----------ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE
Q 011256 262 ----GNY-----------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 262 ----~~~-----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
..+ .++..+..-.+.|+.++|+|||++|++.+.||.++|||..+.+.+..+... . +...|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-F----GGLLC 337 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-F----GGLLC 337 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-c----cceEE
Confidence 000 111122223457889999999999999999999999999987766555433 1 67899
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEc
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 372 (490)
++|+|||++|++|++|..|.||.+..++.+..-.+|+..|+.++|.
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999999999999999999999999998
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.64 E-value=1.7e-12 Score=123.68 Aligned_cols=263 Identities=13% Similarity=0.221 Sum_probs=172.9
Q ss_pred CeEEEEecCCCCEEEEEeC----CCcEEEEeCCCC--c--EEEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEEeCC
Q 011256 189 GIVSLDIHYSKDVIATGGV----DTNAVLFDRPSG--Q--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGS 259 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~ 259 (490)
.-..++++|++++|.+... +|.|..|.+... . .+............++++|++++|+++. .+|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567889999999888866 578999987653 3 2334443344567799999999988887 48999999998
Q ss_pred CCCccceeeeec-----------ccccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCe--EEE--EeecCCCCCCCCC
Q 011256 260 EDGNYDCKHTLK-----------DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGI--CLT--QVSDAGTDGRPEG 323 (490)
Q Consensus 260 ~~~~~~~~~~~~-----------~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~--~~~--~~~~~~~~~~~~~ 323 (490)
..+......... .......++.++|+++++++... ...|.+|++.... ... .+.. .....
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~----~~G~G 193 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV----PPGSG 193 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC----STTSS
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc----ccCCC
Confidence 754333322111 12345789999999998888754 3579999987655 222 2221 12267
Q ss_pred ceEEEEcCCCcEEEEE-cCCCcEEEEECC--CCc--eeeeecC----C--CCCeEEEEEcCCCCEEEEEeCCC--EEEEE
Q 011256 324 YTSAAFHPDGLILGTG-TSEALVKIWDVK--SQA--NVAKFDG----H--VGAVTAISFSENGYYLATAAHDG--VKLWD 390 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g-~~dg~i~iwd~~--~~~--~~~~~~~----~--~~~i~~l~~s~~~~~l~~~~~d~--i~iwd 390 (490)
.+.+.|+|+++++++. -.++.|.+|++. .+. .+..+.. . ......|.++|||++|+++..+. |.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 8999999999877665 456789999987 432 2222211 1 12578999999999999988764 99999
Q ss_pred CCC--C--cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 391 LRK--L--KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 391 ~~~--~--~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
+.. + +.+..+... ......+.++|+|++|++++.+ +.+|+++.............. .....||.|
T Consensus 274 ~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~---~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP---IPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE---SSSEEEEEE
T ss_pred EecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc---CCCCEEEeC
Confidence 942 2 223333332 3457999999999999999876 999998754444444432211 335667765
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.2e-13 Score=136.06 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=151.8
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEecC
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
..|.+||.. +.....+..+...+.+..|+|||+.|+.++.+ ..|.+||+.++. . ..+..+.+...+..|+|+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~-~~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---R-ELVASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---E-EEeccCCCCccCceECCC
Confidence 368899985 44445566677789999999999988887743 469999997742 1 222333445567899999
Q ss_pred CCEEE-EEECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CCc--EEEEECCCCceeeee
Q 011256 286 NKYFV-TASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EAL--VKIWDVKSQANVAKF 359 (490)
Q Consensus 286 ~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~--i~iwd~~~~~~~~~~ 359 (490)
|+.++ +.+.+| .|++||+.++.... +.. +.......+|+|||+.|+.++. +|. |+++|+.+++... +
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-----~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l 331 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN-----HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L 331 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc-----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e
Confidence 98775 445555 59999998887543 221 1133467899999998876653 444 7777877665432 2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEE
Q 011256 360 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 432 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 432 (490)
..+.......+|+|+|++|+..+.+ + |.+||+.++... .+.. ........|+|+|++++..+.+ ..+|.
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 2233345578999999999876543 2 899999876643 3322 1234567899999998887664 45555
Q ss_pred EeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 433 VASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
++... .....+..+ .+.+...+|+|
T Consensus 408 ~~~~g---~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 408 VSTDG---RVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred EECCC---CceEEcccC--CCCCCCCccCC
Confidence 53322 222223222 34566677776
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.9e-13 Score=133.89 Aligned_cols=215 Identities=11% Similarity=0.066 Sum_probs=144.2
Q ss_pred CCCCeEEEEecCCCCEEEEEe---CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEE-eCCC--cEEEEeCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADK--TVRVWQGS 259 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg--~i~iwd~~ 259 (490)
+...+.+.+|+|+|+.|+..+ .+..|++|++.+++... +....+.+..+.|+|||+.|+.. +.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 456789999999999888654 24579999998875433 22233335578999999977754 4455 48888987
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECC-C--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
++ .. ..+..+...+....|+|+|+.|+.++.+ + .|+++|+.++... .+... ........|+|||+.|
T Consensus 276 tg---~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-----~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 276 SG---QI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-----GSQNQDADVSSDGKFM 345 (429)
T ss_pred CC---CE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-----CCCccCEEECCCCCEE
Confidence 74 22 3334444567889999999988877654 4 4555577766543 22211 1334578899999988
Q ss_pred EEEcCC---CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC----EEEEECCCCcceeeeecCCCCCCe
Q 011256 337 GTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 337 ~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i 409 (490)
+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.++ +.++++. +.....+..+ ...+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~--~~~~ 420 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT--DGQV 420 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC--CCCc
Confidence 776543 35889999887643 33321 2345678999999999888764 6777874 4444445433 4567
Q ss_pred eEEEEcC
Q 011256 410 NSVDFDH 416 (490)
Q Consensus 410 ~~i~~s~ 416 (490)
...+|+|
T Consensus 421 ~~p~Wsp 427 (429)
T PRK03629 421 KFPAWSP 427 (429)
T ss_pred CCcccCC
Confidence 7788876
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2e-15 Score=137.38 Aligned_cols=226 Identities=15% Similarity=0.284 Sum_probs=182.2
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE
Q 011256 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 311 (490)
-..+.++.+|.+|+.|+..|.|-.+|..+. .....+. -...|..+.|..+.++|+++ ....++|||- .|..++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHC 205 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEee
Confidence 467889999999999999999999999885 3333332 34578888998777777776 4578899994 4566666
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEE
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWD 390 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd 390 (490)
+... ..|..+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+-.+-+|..+| |.+|.
T Consensus 206 lk~~------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 206 LKRH------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred hhhc------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 6544 6789999999999999999999999999999999999988889999999999988999999998 99999
Q ss_pred CCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEE
Q 011256 391 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIA 468 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 468 (490)
.....++..+..+ .++|.+++++++|.|+++++-| ++|||+.. ...+.++.. ......++||..| ++
T Consensus 280 P~skePLvKiLcH--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~----~~ql~t~~t---p~~a~~ls~Sqkg--lL 348 (545)
T KOG1272|consen 280 PNSKEPLVKILCH--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN----FYQLHTYRT---PHPASNLSLSQKG--LL 348 (545)
T ss_pred CCCcchHHHHHhc--CCCcceEEECCCCcEEeecccccceeEeeecc----ccccceeec---CCCcccccccccc--ce
Confidence 9998888888777 8899999999999999999999 99999943 333333322 2355678888665 33
Q ss_pred EEeCCCcEEEec
Q 011256 469 VGSMDRNLRVFG 480 (490)
Q Consensus 469 s~~~dg~v~iw~ 480 (490)
+.+....|.||.
T Consensus 349 A~~~G~~v~iw~ 360 (545)
T KOG1272|consen 349 ALSYGDHVQIWK 360 (545)
T ss_pred eeecCCeeeeeh
Confidence 344566799995
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.7e-13 Score=134.44 Aligned_cols=219 Identities=15% Similarity=0.140 Sum_probs=144.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEE-EEeCCCcEEEEeCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSE 260 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~ 260 (490)
.+...+.+.+|+|+|+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||.++.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 456688999999999988877643 359999998886543 333345567899999999776 567788877776543
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEEC-CCeEEEEe--CCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYD--LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.. .....+..+........|+|+|+.|+..+. +|...+|. +.++.... +... + .......|+|||++|+
T Consensus 272 ~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~---g--~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 272 DG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFT---G--SYNTSPRISPDGKLLA 343 (427)
T ss_pred CC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecC---C--CCcCceEECCCCCEEE
Confidence 22 223444445555677889999998876654 45555554 44444322 2211 1 2234578999999988
Q ss_pred EEcCCC---cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC----EEEEECCCCcceeeeecCCCCCCee
Q 011256 338 TGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 338 ~g~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
..+.++ .|.+||+.+++... +... .......|+|||+.|+.++.++ +.+.++. +.....+..+ .+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~--~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQ--GGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecC--CCCCC
Confidence 776554 69999998876543 3222 2346789999999988877653 6666763 4444444432 34566
Q ss_pred EEEEcCC
Q 011256 411 SVDFDHS 417 (490)
Q Consensus 411 ~i~~s~~ 417 (490)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 6777763
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5.2e-13 Score=131.64 Aligned_cols=214 Identities=13% Similarity=0.114 Sum_probs=144.3
Q ss_pred CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEE
Q 011256 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSA 327 (490)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (490)
..|.+||.+.. ....+..|...+.+..|+|+|+.|+..+. +..|.+||+.++....... +...+...
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~------~~g~~~~~ 251 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN------FPGMTFAP 251 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec------CCCcccCc
Confidence 36888887552 33445567889999999999998888764 4689999999886543221 12456788
Q ss_pred EEcCCCcEEE-EEcCCCc--EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeee
Q 011256 328 AFHPDGLILG-TGTSEAL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSF 400 (490)
Q Consensus 328 ~~~~~~~~l~-~g~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~ 400 (490)
.|+|||+.|+ +.+.+|. |++||+.++.. ..+..+........|+|||+.|+..+.. + |++||+..+... .+
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l 329 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI 329 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee
Confidence 9999998765 4455554 78889887765 4455555667789999999988877753 2 888898765443 33
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC----
Q 011256 401 ESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD---- 473 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---- 473 (490)
... ...+....|+|+|++|+..+.+ .+||.++...... ..+.. ...+....|+|||++|+..+.+
T Consensus 330 t~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 330 SFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---EeccC---CCCCCCCeECCCCCEEEEEEccCCCC
Confidence 322 3445678899999999887643 3444443222211 12211 2245678999999998776543
Q ss_pred --CcEEEecCCCC
Q 011256 474 --RNLRVFGLPGN 484 (490)
Q Consensus 474 --g~v~iw~~~~~ 484 (490)
..|+++++.++
T Consensus 402 ~~~~L~~~dl~g~ 414 (435)
T PRK05137 402 GAPKLYTVDLTGR 414 (435)
T ss_pred CcceEEEEECCCC
Confidence 25777787654
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.8e-13 Score=125.69 Aligned_cols=269 Identities=17% Similarity=0.261 Sum_probs=172.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEE-----eCC-----CcEEEEeC
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-----SAD-----KTVRVWQG 258 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----s~d-----g~i~iwd~ 258 (490)
+.+..+++++|++++.+. ++.+.|++..++..+.+.... .+.++.|+|-|.+|.+= ..+ -.+.+|++
T Consensus 36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 367888999998888764 668999998888655444433 68999999999988762 122 34679998
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--cEE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LIL 336 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l 336 (490)
.++ .....+......-+++.|++|..+.+-. ..+.+.+|++.+...+.... |...++.+.++|.+ ..+
T Consensus 113 et~---~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl------~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 113 ETG---VQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKL------SVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred ccc---eehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeeee------eccceeeEEecCCCCCceE
Confidence 873 2333333222222678888776543322 23567788776533222111 11334444444431 122
Q ss_pred EE-----EcCCCc---------------------------------------------------------EEEEECCCCc
Q 011256 337 GT-----GTSEAL---------------------------------------------------------VKIWDVKSQA 354 (490)
Q Consensus 337 ~~-----g~~dg~---------------------------------------------------------i~iwd~~~~~ 354 (490)
++ ++.-+. ++++++....
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 21 112223 3444433222
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEeCC--C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC----
Q 011256 355 NVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---- 427 (490)
Q Consensus 355 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---- 427 (490)
+...+. ..++|.++.|+++|+-++++..- . +.|||++- ..+..+. .++-+++-|+|.|++|+.++-+
T Consensus 263 ~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 263 VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC----CCCccceEECCCCCEEEEeecCCCCC
Confidence 222222 36899999999999888776554 3 99999874 3444443 5678899999999999888765
Q ss_pred -eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC------CCcEEEecCCCC
Q 011256 428 -IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM------DRNLRVFGLPGN 484 (490)
Q Consensus 428 -i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~ 484 (490)
+.|||+ .+..++..+... .-+-+.|+|||.+++|+.. |+.++||++.+.
T Consensus 337 ~mEvwDv----~n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 337 DMEVWDV----PNRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ceEEEec----cchhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999998 456666666542 3466899999999998864 688999998764
No 233
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=9.2e-12 Score=111.10 Aligned_cols=271 Identities=15% Similarity=0.228 Sum_probs=184.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCC--CcEE--EEeccCccCEEEEEEeeCCCEEEEEeC-CCcEEEEe
Q 011256 186 SKPGIVSLDIHYSKDVIATGGV---DTNAVLFDRPS--GQIV--TTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQ 257 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd 257 (490)
+.+..+-++|+|+++.|.++.. +|.|-.|.+.. |.+. ........+-+.++++++|++++++.. -|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 3456788999999998888754 46777776654 5442 222222334478999999999888875 58899999
Q ss_pred CCCCCccceeeeecccccc----------eEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCceE
Q 011256 258 GSEDGNYDCKHTLKDHTAE----------VQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~----------v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
+...+..........|.+. +.+..+.|+++++++.+- --.|.+|++..|.......... ....+.+.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRH 195 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRH 195 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCCCCcce
Confidence 9776655555444456665 888999999999998864 2479999999776543332221 22267799
Q ss_pred EEEcCCCcEEEEEc-CCCcEEEEECCCC-c---eeeeec------CCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCC
Q 011256 327 AAFHPDGLILGTGT-SEALVKIWDVKSQ-A---NVAKFD------GHVGAVTAISFSENGYYLATAAHDG--VKLWDLRK 393 (490)
Q Consensus 327 ~~~~~~~~~l~~g~-~dg~i~iwd~~~~-~---~~~~~~------~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~ 393 (490)
+.|||++++..+.+ -+++|.+|..... . .++.+. ........|.+++||++|.++...- |.+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999999887765 4889999998763 2 222221 1234677899999999999987763 88888765
Q ss_pred Ccc-eeeeecCC-CCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 394 LKN-FRSFESSD-SETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 394 ~~~-~~~~~~~~-~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
... +....... .......+.|+++|++|++++.+ +.+|.++........+.... ......|+.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~---~~p~Pvcv~f~ 345 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYA---VVPEPVCVKFL 345 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccccc---CCCCcEEEEEc
Confidence 432 22222211 13347899999999999999887 99999876444333333322 13355677764
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.5e-13 Score=133.19 Aligned_cols=234 Identities=17% Similarity=0.144 Sum_probs=147.3
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEecC
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++. . ..+....+.+.+..|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~-~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---R-RVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---E-EEeecCCCCccceEECCC
Confidence 467777874 45455555677889999999999988877643 359999998752 2 222233345678999999
Q ss_pred CCEEE-EEECCCeEEEE--eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CCcEEEEE--CCCCceeeee
Q 011256 286 NKYFV-TASLDNTWCFY--DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EALVKIWD--VKSQANVAKF 359 (490)
Q Consensus 286 ~~~l~-s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd--~~~~~~~~~~ 359 (490)
|+.|+ +.+.+|...+| |+..+. ...+.. +........|+|||+.|+..+. +|...+|. +.++... .+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-----~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~l 323 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-----SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RV 323 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECCC-----CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EE
Confidence 98876 45677775555 454444 233321 1233466789999998776543 45555664 4444432 22
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEE
Q 011256 360 DGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 432 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 432 (490)
...........|+|+|++|+..+.+ + |.+||+.++.... +.. ........|+|+|+.|+.++.+ ..+|-
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD---TTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC---CCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 2222334567899999999877654 2 9999998776432 222 1234678999999999888765 34554
Q ss_pred EeecCCcceEeeeecCCCCCcceEEEEEcCC
Q 011256 433 VASVKADWNCIKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 463 (490)
++.. ......+.. +.+.+...+|+|-
T Consensus 400 ~~~~---g~~~~~l~~--~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSSD---GRIKQRLSV--QGGDVREPSWGPF 425 (427)
T ss_pred EECC---CCceEEeec--CCCCCCCCccCCC
Confidence 4331 222222322 2456667778763
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3.4e-13 Score=132.78 Aligned_cols=216 Identities=15% Similarity=0.098 Sum_probs=145.5
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEE-EEeCCC--cEEEEeC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG 258 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg--~i~iwd~ 258 (490)
.+...+.+..|+|+|+.|+..+.+ ..|++||+.+++... +..+.+...++.|+|+|+.|+ +.+.+| .|.+||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 345678999999999988877643 469999998776533 333444556789999999665 455555 5889998
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEEC-CCe--EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
.++ . ...+..+.......+|+|+|+.|+.++. +|. |+++|+.++....... . + ......+|+|||+.
T Consensus 280 ~~g---~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~---g--~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GSR---Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-Q---G--NYNARASVSPDGKK 349 (433)
T ss_pred CCC---C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-C---C--CCccCEEECCCCCE
Confidence 774 2 3344455555677899999998887764 444 7777877765433221 1 1 23446899999999
Q ss_pred EEEEcCCC---cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCcceeeeecCCCCCC
Q 011256 336 LGTGTSEA---LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETP 408 (490)
Q Consensus 336 l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~ 408 (490)
|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ + |.++|+.. .....+... .+.
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~ 424 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGE 424 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccC--CCC
Confidence 88765433 6999999887654 333 22244567999999988877664 2 88888854 333444332 345
Q ss_pred eeEEEEcC
Q 011256 409 TNSVDFDH 416 (490)
Q Consensus 409 i~~i~~s~ 416 (490)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 56667765
No 236
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=120.61 Aligned_cols=205 Identities=20% Similarity=0.298 Sum_probs=150.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE---------------------------Ee------------
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---------------------------TL------------ 225 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------~~------------ 225 (490)
.|...|+.+.--|+ +.+.+-+.|+.+.+|++.-+..+. .+
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 55667888877775 566677788888888764321110 00
Q ss_pred --------------ccCccCEEEEEEee-CCC--EEEEEeCCCcEEEEeCCCCCc-------cceeeeecccccceEEEE
Q 011256 226 --------------SGHSKKVTSVKFVT-EGD--LFLTGSADKTVRVWQGSEDGN-------YDCKHTLKDHTAEVQAVT 281 (490)
Q Consensus 226 --------------~~h~~~v~~l~~~~-~~~--~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~l~ 281 (490)
.+..+.+.|..|.- ++. +++.|..+|.|.+||+.++.. ++.......|..+|.++.
T Consensus 133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 01234456665432 333 577888999999999988521 233344557999999999
Q ss_pred EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC
Q 011256 282 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG 361 (490)
Q Consensus 282 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 361 (490)
+.+.-+.=++|+.+..+..|.+.....-.++... ..-...++..+.+-||++++|+++-|+.|++|..++..++..++-
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e-~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky 291 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE-ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY 291 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccCcccccce-EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh
Confidence 9887677788888889999988654211111111 001125688899999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-EEEEEC
Q 011256 362 HVGAVTAISFSENGYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 362 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~ 391 (490)
|...|++++|+|+..++++++.|+ |.+|++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999998 999986
No 237
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=6.2e-14 Score=139.54 Aligned_cols=203 Identities=19% Similarity=0.286 Sum_probs=153.5
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-cCccCEEEEEEe-eCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFV-TEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.-++|.....+|+++|.-..|+|||......+..+. +.+..|+++.-+ ..|+.+++|..||.|++||.........+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 556788776677777778899999999888777665 344557776543 357899999999999999988765445667
Q ss_pred eecccccc--eEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 269 TLKDHTAE--VQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 269 ~~~~h~~~--v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
..+.|+.. |..+.+.++|- .+++|+.||.|++||++.......+.....-...+..+++.+|++..++|+|+. +.|
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence 77788887 99999998774 599999999999999998532222221111111135899999999999999998 999
Q ss_pred EEEECCCCceeeeecC-------CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc
Q 011256 346 KIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 395 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~ 395 (490)
+||++.. +.+..++. ..+.+.|++|+|..-++++|+.|. |.||...+..
T Consensus 1328 kIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1328 KIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9999854 33333321 245789999999999999999888 9999876543
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=3.1e-13 Score=116.81 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=111.8
Q ss_pred EEEEecCCCCEEEEEeC----------CCcEEEEeCCC-CcEEEEecc-CccCEEEEEEeeCCCEEEEE--eCCCcEEEE
Q 011256 191 VSLDIHYSKDVIATGGV----------DTNAVLFDRPS-GQIVTTLSG-HSKKVTSVKFVTEGDLFLTG--SADKTVRVW 256 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~--s~dg~i~iw 256 (490)
..+.|+++|++|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987654332 13344554422 233344432 34579999999999976554 467899999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
|+.. ..+..+. ...++.+.|+|+|+++++++.+ |.|.+||+++.+.+..... ..++.++|+|||
T Consensus 89 d~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-------~~~t~~~WsPdG 155 (194)
T PF08662_consen 89 DVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-------SDATDVEWSPDG 155 (194)
T ss_pred cCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-------CcEEEEEEcCCC
Confidence 9963 4555553 5678899999999999998754 6799999998888766542 347899999999
Q ss_pred cEEEEEcC------CCcEEEEECCCCceeeee
Q 011256 334 LILGTGTS------EALVKIWDVKSQANVAKF 359 (490)
Q Consensus 334 ~~l~~g~~------dg~i~iwd~~~~~~~~~~ 359 (490)
++|++++. |..++||+. .|+.+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 99999864 678899998 46555443
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=4.8e-13 Score=115.57 Aligned_cols=154 Identities=20% Similarity=0.404 Sum_probs=110.0
Q ss_pred EEEEEeeCCCEEEEEeC----------CCcEEEEeCCCCCccceeeeec-ccccceEEEEEecCCCEEEEE--ECCCeEE
Q 011256 233 TSVKFVTEGDLFLTGSA----------DKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTA--SLDNTWC 299 (490)
Q Consensus 233 ~~l~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~--~~dg~i~ 299 (490)
..+.|+++|++|+.-.. -|...+|.++..+ .....+. ...++|.+++|+|+|+.|++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45788999986655332 1345566664433 2223332 234579999999999987654 3567999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC---CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCC
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 376 (490)
+||++ ++.+..+.. ..+..+.|+|+|++|++|+. .|.|.+||.++.+.+.... | ..++.++|+|+|+
T Consensus 87 lyd~~-~~~i~~~~~-------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr 156 (194)
T PF08662_consen 87 LYDVK-GKKIFSFGT-------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGR 156 (194)
T ss_pred EEcCc-ccEeEeecC-------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCC
Confidence 99997 555555531 56788999999999999864 4679999999888887765 3 3578999999999
Q ss_pred EEEEEeC------C-CEEEEECCCCcceee
Q 011256 377 YLATAAH------D-GVKLWDLRKLKNFRS 399 (490)
Q Consensus 377 ~l~~~~~------d-~i~iwd~~~~~~~~~ 399 (490)
+|+++.. | +++||+.. ++.+..
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 9999864 3 39999985 444433
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=3.3e-11 Score=107.64 Aligned_cols=275 Identities=14% Similarity=0.198 Sum_probs=185.7
Q ss_pred CCcEEEEeCCCC--cE-EEEeccCccCEEEEEEeeCCCEEEEEeC---CCcEEEEeCCCC-CccceeeeecccccceEEE
Q 011256 208 DTNAVLFDRPSG--QI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSED-GNYDCKHTLKDHTAEVQAV 280 (490)
Q Consensus 208 dg~i~iwd~~~~--~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l 280 (490)
++-|++|++.+. +. ...+-.+.+.++-++|+|+++.|.++.. +|.|..|.++.. +.+..+........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999988732 22 1222346677899999999998888865 477888887753 3334443333334455889
Q ss_pred EEecCCCEEEEEEC-CCeEEEEeCCC-CeEEEE---eecCCCCCC----CCCceEEEEcCCCcEEEEEcC-CCcEEEEEC
Q 011256 281 TVHATNKYFVTASL-DNTWCFYDLSS-GICLTQ---VSDAGTDGR----PEGYTSAAFHPDGLILGTGTS-EALVKIWDV 350 (490)
Q Consensus 281 ~~~~~~~~l~s~~~-dg~i~iwd~~~-~~~~~~---~~~~~~~~~----~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~ 350 (490)
++++++++++++.. .|.|.++-+.. |..... +.......| ...+.+..+.|++++|++.+. --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998875 58899999865 332222 111111111 122788999999998888753 236999999
Q ss_pred CCCceeeeec---CCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCC-cc---eeeeecC----CCCCCeeEEEEcCC
Q 011256 351 KSQANVAKFD---GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL-KN---FRSFESS----DSETPTNSVDFDHS 417 (490)
Q Consensus 351 ~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~-~~---~~~~~~~----~~~~~i~~i~~s~~ 417 (490)
..|+....-. .....-..|.|+|++++..+..+= + |.+|..... .. ++.+... ........|.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8775432211 234467899999999998887764 4 999988763 22 2222211 12456788999999
Q ss_pred CCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC-cEEEecCCCC
Q 011256 418 GSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR-NLRVFGLPGN 484 (490)
Q Consensus 418 ~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~v~iw~~~~~ 484 (490)
|++|+++... |.+|.++........+.....+ ......+.|+++|++|++++.++ .|.+|..+..
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 9999998765 8889887655544554444432 33478899999999999988654 6888887653
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=5.3e-13 Score=119.34 Aligned_cols=216 Identities=15% Similarity=0.212 Sum_probs=162.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc----EEEEeccCccCEEEEEEeeCCC-EEEEEeCC--CcEEEEeCCC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEGD-LFLTGSAD--KTVRVWQGSE 260 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~d--g~i~iwd~~~ 260 (490)
.+|..+... ...|++|-.+|.+.+|....+. .+..+..+ ..+..+.-++... ++++|+.. ..+.|||++.
T Consensus 106 ~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 345444443 4577888899999999987432 23333333 4466666666444 56679988 8899999987
Q ss_pred CCccceeeeecc---------cccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEE
Q 011256 261 DGNYDCKHTLKD---------HTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 261 ~~~~~~~~~~~~---------h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~ 328 (490)
. +.+..-+. -.-.++++.|-+. ...|++++.-+.+++||...+. ++..+... ..+++++.
T Consensus 183 ~---~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-----E~~is~~~ 254 (412)
T KOG3881|consen 183 S---KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-----ENPISSTG 254 (412)
T ss_pred c---eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-----cCcceeee
Confidence 5 22222111 1124667888887 7899999999999999998654 34444322 37899999
Q ss_pred EcCCCcEEEEEcCCCcEEEEECCCCceeee-ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCC
Q 011256 329 FHPDGLILGTGTSEALVKIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 406 (490)
..|+++++++|..-|.+..||++.++.... +.+..+.|++|..+|++.++++++-|. |+|+|+.+.+.+..... .
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---K 331 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---K 331 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---h
Confidence 999999999999999999999999988777 888999999999999999999999998 99999999776655544 4
Q ss_pred CCeeEEEEcCC
Q 011256 407 TPTNSVDFDHS 417 (490)
Q Consensus 407 ~~i~~i~~s~~ 417 (490)
..++++.+.++
T Consensus 332 s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 SRLTFILLRDD 342 (412)
T ss_pred ccccEEEecCC
Confidence 56777777654
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.1e-12 Score=119.28 Aligned_cols=274 Identities=16% Similarity=0.214 Sum_probs=196.0
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC-----------CCcEEEEeCC
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-----------DKTVRVWQGS 259 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----------dg~i~iwd~~ 259 (490)
+-+.|||-|.+|++-..-| |.+|--.+-..++.+. |.+ |.-+.|||+.+||+|=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999988776 8899876666666665 654 899999999999998653 2579999999
Q ss_pred CCCccceeeeecc---cccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 260 EDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 260 ~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
++ .....+.. ....-.-+.|+.+++|++.... ..|.||+..+...+..-. -...+|....|+|.+++|
T Consensus 291 tG---~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-----lki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 291 TG---LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-----LKISGIRDFSWSPTSNLL 361 (698)
T ss_pred cc---chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----cCCccccCcccCCCcceE
Confidence 97 34444433 2222334679999999998877 578999877643332211 223778999999999888
Q ss_pred EEEcC-----CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-------C----CEEEEECCCCcc-eee
Q 011256 337 GTGTS-----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-------D----GVKLWDLRKLKN-FRS 399 (490)
Q Consensus 337 ~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-------d----~i~iwd~~~~~~-~~~ 399 (490)
|.=+. -..+.+-.+.+++.+++-.-+.-.=..+-|-.+|.+|+.--+ . ++-|+.++.... +..
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 86432 235677777777777666555444455778888888886422 1 166777765443 233
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe---
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS--- 471 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--- 471 (490)
... ...|...+|.|.|..+++-+.+ +.+|.+......+..+..+.. ...+.+.|+|.|++++.++
T Consensus 442 vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 442 VEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred eec---chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecc
Confidence 333 5678999999999888776654 899999766666777776653 3568899999999988764
Q ss_pred CCCcEEEecCCC
Q 011256 472 MDRNLRVFGLPG 483 (490)
Q Consensus 472 ~dg~v~iw~~~~ 483 (490)
..|.+.++|.+-
T Consensus 515 ~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 515 RRGDLEFYDTDY 526 (698)
T ss_pred cccceEEEecch
Confidence 568899999874
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.3e-12 Score=125.09 Aligned_cols=278 Identities=13% Similarity=0.136 Sum_probs=194.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---------------cEEEEeccCccCEEEEEEeeCCCEEEEEeCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG---------------QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK 251 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg 251 (490)
.....|+.|+....++++||.||.+++..+.+. ..-+++.||++.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 356789999999999999999999999976542 11246789999999999999888999999999
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
.|.||-+-.+. +-.-..-....+-|.+++|+.+|..++..-.||.|.+=.++.......-... .....+.|++
T Consensus 94 lIiVWmlykgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg------~~l~hv~ws~ 166 (1189)
T KOG2041|consen 94 LIIVWMLYKGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG------QLLAHVLWSE 166 (1189)
T ss_pred eEEEEeeeccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch------heccceeecc
Confidence 99999877642 2111122234567899999999999999999999988777654432211100 2345788999
Q ss_pred CCcEEEEEcCCCcEEEEECCCC-------ceeee----ecCCCCCeEEEEEc--------CCCCEEEEEeCCC-EEEEEC
Q 011256 332 DGLILGTGTSEALVKIWDVKSQ-------ANVAK----FDGHVGAVTAISFS--------ENGYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~-------~~~~~----~~~~~~~i~~l~~s--------~~~~~l~~~~~d~-i~iwd~ 391 (490)
|...++.+-.+|.+.+||.... .+... +......|-.+.|. |+...|+++..+| +.|..-
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 9998888888999999997542 11111 11122235566664 4667899999888 777655
Q ss_pred CCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----------eEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 392 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
.+......+.. ...+..+.|+++|.+|++++.+ +.+|. .-+..+.++... ...|++++|
T Consensus 247 eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvp--g~~It~lsW 316 (1189)
T KOG2041|consen 247 ENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVP--GSCITGLSW 316 (1189)
T ss_pred cCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecC--CceeeeeEE
Confidence 54444444443 4678899999999999999875 22222 223444555443 668999999
Q ss_pred cCCCCeEEEEeCCCcEEEecCC
Q 011256 461 GPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 461 s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
-..|-.++.+ .|+.|++=++.
T Consensus 317 Eg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 317 EGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cCCceEEEEE-ecceEEEEeec
Confidence 7777666655 36666654443
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=1.1e-11 Score=118.02 Aligned_cols=241 Identities=18% Similarity=0.223 Sum_probs=160.5
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCccceeee
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 269 (490)
..+.|+|||+++++++.||.|.++|+.+++.+.++..... ..++++++||+++++++ .++.+.++|..+. +.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl---e~v~~ 115 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETL---EPVKT 115 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccc---cceee
Confidence 4577999999999999999999999999999999986554 67899999999888765 6899999999886 45554
Q ss_pred ecc-------cccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEE--EeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 270 LKD-------HTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 270 ~~~-------h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
+.. ....+.++..+|....++..-. .+.|.+.|......+. .+... .......|+|++++++++
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g------~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG------RFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--------TTEEEEEE-TTSSEEEEE
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc------ccccccccCcccceeeec
Confidence 432 2346778888888886666655 4889888987654332 22221 456789999999887664
Q ss_pred -cCCCcEEEEECCCCceeeeec-------------------------------------------------------CCC
Q 011256 340 -TSEALVKIWDVKSQANVAKFD-------------------------------------------------------GHV 363 (490)
Q Consensus 340 -~~dg~i~iwd~~~~~~~~~~~-------------------------------------------------------~~~ 363 (490)
..+..|.++|..+++.+..+. ...
T Consensus 190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 556678888887765543321 111
Q ss_pred CCeEEEEEcCCCCEEEEE---eCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC----eEEEEEe
Q 011256 364 GAVTAISFSENGYYLATA---AHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVA 434 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~---~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~ 434 (490)
++ ..+..+|++.++.+. +.+ . |.++|.++.+....+.... ...+..+.|+++|..+.++..+ +.|||.
T Consensus 270 ~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~- 346 (369)
T PF02239_consen 270 GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA- 346 (369)
T ss_dssp SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEET-
T ss_pred Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEEC-
Confidence 22 456678999999998 444 3 9999999998777765422 2348999999999988777554 778875
Q ss_pred ecCCcceEeeeec
Q 011256 435 SVKADWNCIKTFP 447 (490)
Q Consensus 435 ~~~~~~~~~~~~~ 447 (490)
.+++.+..++
T Consensus 347 ---~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 ---KTLKEKKRIP 356 (369)
T ss_dssp ---TTTEEEEEEE
T ss_pred ---CCcEEEEEEE
Confidence 6677766654
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=3.5e-13 Score=118.44 Aligned_cols=253 Identities=15% Similarity=0.282 Sum_probs=173.4
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--ccceeeeecccc------------cceEEEEEecCC--CEEEEE
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATN--KYFVTA 292 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~~~~--~~l~s~ 292 (490)
..-|.++.|...|.+|++|..+|.|.+|.-.... .+.....++.|. ..|..+.|.+++ ..|+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999754432 223444454554 358899999876 478888
Q ss_pred ECCCeEEEEeCCCCeEEE--------------------Ee-----------ecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 293 SLDNTWCFYDLSSGICLT--------------------QV-----------SDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~--------------------~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
+.|.+|++|.+....... .+ .......|...|.++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999875432111 00 011134577788999999999988876 4
Q ss_pred CCcEEEEECCCCce---eeeecCC-----CCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcc----eeeeecCC---
Q 011256 342 EALVKIWDVKSQAN---VAKFDGH-----VGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKN----FRSFESSD--- 404 (490)
Q Consensus 342 dg~i~iwd~~~~~~---~~~~~~~-----~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~----~~~~~~~~--- 404 (490)
|=.|.+|++.-... +..++++ ..-|++..|+|. .++++-++..| |++-|+|.... ...+..+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 67899999864322 2223333 236889999996 45555555556 99999995321 11111110
Q ss_pred -------CCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCC----------Ccce---EEEEEcCC
Q 011256 405 -------SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSG----------TGKA---TCVKFGPD 463 (490)
Q Consensus 405 -------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~----------~~~v---~~~~~s~~ 463 (490)
.-..|..+.|+++|+|+++-..- +++|++....+ ++.+++.|.. ...| ..++|+.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK---PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC---cceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 13568899999999999998877 99999854333 3333333311 1222 45789999
Q ss_pred CCeEEEEeCCCcEEEecCCCCC
Q 011256 464 AKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 464 ~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+.+++||+....+++|++..+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 9999999999999999976654
No 246
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=1.1e-11 Score=122.25 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=138.2
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEec
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 284 (490)
...|.++|... .....+..+...+.+..|+|+|++|+.++.+ ..|++||+.++. . ..+..+...+.++.|+|
T Consensus 169 ~~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~-~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 169 RYELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---R-EKVASFPGMNGAPAFSP 243 (417)
T ss_pred cceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---E-EEeecCCCCccceEECC
Confidence 34577888753 3344555567778999999999998887654 479999998742 1 22333455677789999
Q ss_pred CCCEEEE-EECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--cEEEEECCCCceeee
Q 011256 285 TNKYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK 358 (490)
Q Consensus 285 ~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~ 358 (490)
+++.|+. .+.++ .|++||+.++....... +........|+|||+.|+..+. ++ .|+++|+.+++.. .
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCC------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 9987764 44444 58899998775433221 1123456789999988776544 33 5888888776543 3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCC----EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 359 FDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
+..+...+..+.|+|+|.+++.++.++ |.+||+.+... ..+... .......|+|+|++|+..+.+
T Consensus 317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT---GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC---CCCCCceECCCCCEEEEEEeC
Confidence 433455677889999999988877652 88899887443 222221 223456899999998887765
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=1.1e-11 Score=114.68 Aligned_cols=275 Identities=15% Similarity=0.241 Sum_probs=175.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC---------------
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--------------- 251 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--------------- 251 (490)
.-++..++|||.|.+|++....| |.+|....+..+..+. |. .|..+.|+|++++|.+-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccc-eEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 34788999999999999876654 8999988777666665 43 499999999999999865433
Q ss_pred cEEEEeCCCCCccceeeeecccccc--eE-EEEEecCCCEEEEEECCCeEEEEeCCCCeEE-EEeecCCCCCCCCCceEE
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAE--VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSA 327 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~ 327 (490)
.+.+||+.++ ..+..+.+...+ .+ -+.|+-+.+|++-. ....++|+++ ++... ..+. .-...++...
T Consensus 109 ~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~----~lr~~gi~dF 179 (561)
T COG5354 109 NVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFK----NLRPVGILDF 179 (561)
T ss_pred ceeEEeccCc---eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchh----hccccceeeE
Confidence 4899999887 666666655554 44 66777777766554 3346777775 22111 0000 0011334444
Q ss_pred EEcCCC--cEEEE-----EcCCCcEEEEECCCCce---------------------------------------------
Q 011256 328 AFHPDG--LILGT-----GTSEALVKIWDVKSQAN--------------------------------------------- 355 (490)
Q Consensus 328 ~~~~~~--~~l~~-----g~~dg~i~iwd~~~~~~--------------------------------------------- 355 (490)
.|+|.+ ..|+. ++..+.+++|.+..++.
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 444421 12221 22333444443322211
Q ss_pred -------eeeecCCCCCeEEEEEcCCCCEEEEEe--CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 356 -------VAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 356 -------~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
+.......++|...+|.|.++.+++.+ ... +.++|++.. ....+. ...-+.+.|+|.+++++.++
T Consensus 260 ~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 260 LRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred EeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----CcccccccccCcccEEEEec
Confidence 111113467899999999888777766 333 899999876 222222 34456788999999999987
Q ss_pred cC-----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe------CCCcEEEecCCCCC
Q 011256 426 AD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS------MDRNLRVFGLPGND 485 (490)
Q Consensus 426 ~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~v~iw~~~~~~ 485 (490)
-+ +.+|+. .....+...+.+. ...-+.|+|||.++.+.. .|..|.||++.+..
T Consensus 335 F~nl~gni~i~~~---~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 335 FDNLQGNIEIFDP---AGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCccccceEEecc---CCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 66 778876 2334444455432 345678999999987763 47889999997653
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1e-11 Score=117.15 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=158.7
Q ss_pred eCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEe------c--------------CCCEEEEEECCCeE
Q 011256 239 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH------A--------------TNKYFVTASLDNTW 298 (490)
Q Consensus 239 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~------~--------------~~~~l~s~~~dg~i 298 (490)
|...++|....||.++||+...+...........-.+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456689999999999999988763222222222223334444442 2 22357778889999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEE
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 378 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 378 (490)
.+|++..++....+. ...|.+.|.++.++.+-..|.+++.|+.+..|+......++.+......+.+++.+|||..+
T Consensus 83 ~~ys~~~g~it~~~s---t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLS---TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEe---cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 999999999888887 45778999999999999999999999999999999999999999888899999999999999
Q ss_pred EEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCC-----CCEEEEEecC---eEEEEEeecCCcceEeeeec
Q 011256 379 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHS-----GSYLAVASAD---IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 379 ~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~-----~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~ 447 (490)
++++.. |++||+.+.+.+..|..| .++|.++.|.-+ |.++.++..- +.+|.++...+.......+.
T Consensus 160 ~~as~~-ik~~~~~~kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~ 233 (541)
T KOG4547|consen 160 LTASRQ-IKVLDIETKEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLT 233 (541)
T ss_pred Eeccce-EEEEEccCceEEEEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeec
Confidence 988744 999999999999999887 789999999776 7777665433 88998876444444444443
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.7e-11 Score=119.70 Aligned_cols=232 Identities=15% Similarity=0.084 Sum_probs=146.4
Q ss_pred cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEecCC
Q 011256 210 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
.|.++|...+. ...+..+...+....|+|||+.|+..+.+ ..|.+|++.++. . ..+....+.+....|+|+|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~-~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---R-EQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---E-EEccCCCCCcCCeEECCCC
Confidence 47777876444 44455577789999999999988776643 358889987752 1 2222233445578999999
Q ss_pred CEEEE-EECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--cEEEEECCCCceeeeec
Q 011256 287 KYFVT-ASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 360 (490)
Q Consensus 287 ~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~ 360 (490)
+.|+. .+.+| .|++||+.++.... +.. +........|+|||+.|+..+. +| .|+++|+.+++......
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-----~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSR-VTN-----HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEE-ccc-----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 98774 44455 68888998876543 221 1134556789999987766543 33 57788887776433221
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEE
Q 011256 361 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 433 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 433 (490)
.........|+|+|++|+..+.. + |.+||+.++... .+... .......|+|+|+.++..+.+ ..+|-+
T Consensus 329 -~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 329 -VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred -CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 22233457899999999877653 2 888999876542 22221 122346899999999887754 445555
Q ss_pred eecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 434 ASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
+... .....+.. +.+.+...+|+|
T Consensus 404 ~~~g---~~~~~l~~--~~g~~~~p~ws~ 427 (430)
T PRK00178 404 SING---RVRLPLPT--AQGEVREPSWSP 427 (430)
T ss_pred ECCC---CceEECcC--CCCCcCCCccCC
Confidence 3322 22222322 134566677776
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=3.5e-10 Score=105.18 Aligned_cols=257 Identities=12% Similarity=0.109 Sum_probs=162.0
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC----------CCcEEEEeCCCCCccceeeeeccc-----
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA----------DKTVRVWQGSEDGNYDCKHTLKDH----- 273 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~h----- 273 (490)
+.|.+.|..+++.+..+.....+-. + ++|||+.|+++.. +..|.+||..+. +.+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---LPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---cEEeEEccCCCchh
Confidence 8999999999999988875444332 4 8999997777655 789999999886 455444421
Q ss_pred --ccceEEEEEecCCCEEEEEE-C-CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEE
Q 011256 274 --TAEVQAVTVHATNKYFVTAS-L-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWD 349 (490)
Q Consensus 274 --~~~v~~l~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 349 (490)
......++++|+|+++++.. . +..|.+.|+.+++.+..+... ....-...+++..++. +.||......
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp------~~~~vy~t~e~~~~~~--~~Dg~~~~v~ 173 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP------DCYHIFPTANDTFFMH--CRDGSLAKVG 173 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC------CCcEEEEecCCccEEE--eecCceEEEE
Confidence 22344788999999998776 3 689999999999999888642 2122222222222222 2334333322
Q ss_pred CCC-Cce-ee---eecCCCCCeE-EEEEcC-CCCEEEEEeCCCEEEEECCCCc-----ceeeeecCC-----CCCCeeEE
Q 011256 350 VKS-QAN-VA---KFDGHVGAVT-AISFSE-NGYYLATAAHDGVKLWDLRKLK-----NFRSFESSD-----SETPTNSV 412 (490)
Q Consensus 350 ~~~-~~~-~~---~~~~~~~~i~-~l~~s~-~~~~l~~~~~d~i~iwd~~~~~-----~~~~~~~~~-----~~~~i~~i 412 (490)
+.. ++. .. .+.....++. .-.|.+ +|.++++...+.|.+.|+.... ....+.... ....+.-+
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 221 111 11 1111001100 003455 8899988888559999965432 222222110 12233459
Q ss_pred EEcCCCCEEEEEe------------cCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC-eEEEEe-CCCcEEE
Q 011256 413 DFDHSGSYLAVAS------------ADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGS-MDRNLRV 478 (490)
Q Consensus 413 ~~s~~~~~l~~~~------------~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~v~i 478 (490)
+++++++.+++.. ..+.++|. .+++.+..+.. ...+..++++||++ +|++.+ .++.|.+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~----~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDA----KTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEEC----CCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 9999999998853 11555554 55666666654 45789999999999 777666 5788999
Q ss_pred ecCCCCC
Q 011256 479 FGLPGND 485 (490)
Q Consensus 479 w~~~~~~ 485 (490)
+|..+.+
T Consensus 327 iD~~t~k 333 (352)
T TIGR02658 327 FDAETGK 333 (352)
T ss_pred EECcCCe
Confidence 9987764
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.49 E-value=2e-11 Score=105.38 Aligned_cols=269 Identities=13% Similarity=0.136 Sum_probs=172.7
Q ss_pred CCcEEEEeCCCCcEEE--Ee-ccCccCEEEEEEee---CCC-EEEEEeCCCcEEEEeCCCCCccceeeeecccc---cce
Q 011256 208 DTNAVLFDRPSGQIVT--TL-SGHSKKVTSVKFVT---EGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AEV 277 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~~---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v 277 (490)
.|.+.+|++...+... ++ ......+..+.|.- +|. .++-+..+|.|.+|..........+..+..-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678899887654433 11 12344577788864 555 56777788999999876542211122222111 134
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCC-Cce
Q 011256 278 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKS-QAN 355 (490)
Q Consensus 278 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~-~~~ 355 (490)
.++.|++.+..++++..+|.+.+-+........... ...|........|+. +.+++++|+.||.+..||+|. ++.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~---wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQT---WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeeccc---ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 578899999999999999999976655544333211 345667777888876 457999999999999999993 343
Q ss_pred eee-ecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCC-CcceeeeecCCCCCCeeEEEEcCCCC--EEEEEecC-e
Q 011256 356 VAK-FDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGS--YLAVASAD-I 428 (490)
Q Consensus 356 ~~~-~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~--~l~~~~~d-i 428 (490)
+.. .+.|...|.+|.-+|. +.++++|+.|. |++||.|+ ++++..-.. .+.|..+.++|.-. +|+++-.+ .
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ 278 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGA 278 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcCc
Confidence 433 3558889999988874 88999999997 99999995 455544433 57899999998643 44444444 7
Q ss_pred EEEEEeecCCcceEe-eeecCCCCCcceEEEEEcCCCCeEEEEe-CCCcEE-EecCCCC
Q 011256 429 RVYQVASVKADWNCI-KTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLR-VFGLPGN 484 (490)
Q Consensus 429 ~v~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~-iw~~~~~ 484 (490)
+|.+........... .....| .+-+..-.|.....+|++++ .|+.++ +|-.-++
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~h--dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIH--DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eEEEecccccchheeeeccccc--cceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 777764433322222 222222 44444555544445677754 677755 7754444
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.4e-12 Score=119.55 Aligned_cols=187 Identities=19% Similarity=0.297 Sum_probs=151.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecc---CccCEEEEEEe------e--------------CCCEEEEEeCCCcE
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG---HSKKVTSVKFV------T--------------EGDLFLTGSADKTV 253 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~------~--------------~~~~l~s~s~dg~i 253 (490)
|...++|....||.+++|+...++....|.. -++..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776642 22334444442 1 23368888899999
Q ss_pred EEEeCCCCCccceeeee--cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 254 RVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
.+|++..+ +....+ ..|.+.|+++.++.+-..|.+++.|+.+.+|+......+...... ...+.+++++|
T Consensus 83 ~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-----~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-----KPLVSSLCISP 154 (541)
T ss_pred EEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-----CCccceEEEcC
Confidence 99999876 444444 479999999999998999999999999999999999888877643 26789999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCC-----CCEEEEEeCC--CEEEEECCC
Q 011256 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-----GYYLATAAHD--GVKLWDLRK 393 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~~l~~~~~d--~i~iwd~~~ 393 (490)
||..+++++ +.|++||+++++.+..|.+|.++|++++|-.+ |.++.++..- ++.+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999876 68999999999999999999999999999887 7777766544 388886654
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=5.3e-12 Score=111.18 Aligned_cols=244 Identities=18% Similarity=0.242 Sum_probs=175.2
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe-CCCCcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFD-RPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
..++|.+.|++...-|..+-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-.+|++.-+.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 4567778888888888888899999999999994 44454433332 234678999999999999999999999988775
Q ss_pred CCC-ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 260 EDG-NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 260 ~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
..- .....+....|...|..+.|+-....+++.+.|..+..--.+.+..+..+... ...+++.+.-. +.+.
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~------~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE------TPASALQFDAL--YAFV 170 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee------ccCCCCceeeE--EEEe
Confidence 531 12345556689999999999988899999999988877666666554433321 11122222211 5667
Q ss_pred EcCCCcEEEEECC--CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 339 GTSEALVKIWDVK--SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 339 g~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
|...|.|....+. .-..+.++.+|.+.+++++|.+....|++|..|. +.+||+--.+.+.. ....+...+..+..-
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~-el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY-ELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee-eeccchhhhhhhhhh
Confidence 7777777665543 4467888999999999999999999999999997 99999975544322 222235566666666
Q ss_pred CCCCEEEEEecC--eEEEEEe
Q 011256 416 HSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~ 434 (490)
+--+.+++++.| |.+|+++
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 666667777776 7788774
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=2.5e-12 Score=128.50 Aligned_cols=273 Identities=15% Similarity=0.213 Sum_probs=186.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEe-e------CCCEEEEEeCCCcEEEEeCCC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-T------EGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~------~~~~l~s~s~dg~i~iwd~~~ 260 (490)
+++++..+-. ++|.+| ..-.|.+||+.++..+..+... ..+.++ + .+.+++++..-+.+..=+...
T Consensus 8 ~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~----~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQS----KILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred ccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhh----cccccccccccceeccceEEEEEeecceeecchhh
Confidence 3445555443 566554 3457999999888665544311 111111 1 233455555444333222111
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
..... ..+.|....+......++.++.+..+.+||...+........... ..-....-+.++++.-++++|+
T Consensus 81 ----~~~~~---~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~~~~~i~~gs 152 (967)
T KOG0974|consen 81 ----QIIER---FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSAEELYIASGS 152 (967)
T ss_pred ----hhhhh---ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccCcEEEEEecc
Confidence 11222 223344455555778899999999999999988876655542210 0001112234566778999999
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
.-+.|.+|+....+.-..+.+|.+.|.++.|+.||.++++.|+|. +++|++.+.+... -....|...+..++|+|+
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--
Confidence 999999999874444446889999999999999999999999997 9999999987665 223345788999999998
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.+++++.| .++|.. +...+..+..|. ...+..++..++...++|++.||.+++|++.+.
T Consensus 230 ~i~t~gedctcrvW~~-----~~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGV-----NGTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEec-----ccceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999 899965 344444666663 557899999999999999999999999998653
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=4.2e-11 Score=118.09 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=138.6
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC---CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
.|.++|.... ....+..+...+....|+|+|++|+.++.+ ..|++||+.++........ ...+.++.
T Consensus 171 ~l~~~d~~g~----~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~------~~~~~~~~ 240 (417)
T TIGR02800 171 ELQVADYDGA----NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF------PGMNGAPA 240 (417)
T ss_pred eEEEEcCCCC----CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC------CCCccceE
Confidence 5777777542 233444566678999999999999887654 4799999998865433221 13456789
Q ss_pred EcCCCcEEEE-EcCCC--cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeee
Q 011256 329 FHPDGLILGT-GTSEA--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 329 ~~~~~~~l~~-g~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~ 401 (490)
|+|||+.|+. .+.++ .|++||+.++... .+..+........|+|+|++|+..+.. + |+++|+..++.. .+.
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~ 318 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT 318 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee
Confidence 9999987664 44444 5899999877543 343344455677999999988776653 2 888888766533 233
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC---c
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR---N 475 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~ 475 (490)
.. ......+.|+|+|++++.++.+ .+||.++........ +.. ........|+|||++|+.++.++ .
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~---l~~---~~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV---LTD---TGLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE---ccC---CCCCCCceECCCCCEEEEEEeCCCcEE
Confidence 22 3456778999999999888765 355555433222222 211 11234568999999988877654 4
Q ss_pred EEEecCCC
Q 011256 476 LRVFGLPG 483 (490)
Q Consensus 476 v~iw~~~~ 483 (490)
+++.+..+
T Consensus 391 l~~~~~~g 398 (417)
T TIGR02800 391 LGLVSTDG 398 (417)
T ss_pred EEEEECCC
Confidence 55656544
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.1e-11 Score=119.19 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=140.5
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEE-EEeCCC--cEEEEeC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADK--TVRVWQG 258 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg--~i~iwd~ 258 (490)
.+...+....|+|+|+.|+..+.+ ..|++||+.+++... +....+.+....|+|||+.|+ +.+.+| .|.+||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345678999999999988776543 368999998876543 333344456789999999776 444555 5778888
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEEC-CC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
.++. ...+..+........|+|+|+.++..+. +| .|+++|+.+++...... . + .......|+|||+.
T Consensus 275 ~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~---~--~~~~~~~~Spdg~~ 344 (430)
T PRK00178 275 ASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-V---G--NYNARPRLSADGKT 344 (430)
T ss_pred CCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-C---C--CCccceEECCCCCE
Confidence 7742 2334445555667889999998776654 33 57788888776433221 1 1 22345789999998
Q ss_pred EEEEcCC-C--cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCC
Q 011256 336 LGTGTSE-A--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETP 408 (490)
Q Consensus 336 l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~ 408 (490)
|+..+.+ + .|.+||+.+++... +.. ........|+|||++++..+.+ + |.++++... ....+... .+.
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~--~g~ 419 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTA--QGE 419 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC--CCC
Confidence 8876543 3 58889998876432 321 1222356899999998877654 2 777777533 33333322 344
Q ss_pred eeEEEEcC
Q 011256 409 TNSVDFDH 416 (490)
Q Consensus 409 i~~i~~s~ 416 (490)
+....|+|
T Consensus 420 ~~~p~ws~ 427 (430)
T PRK00178 420 VREPSWSP 427 (430)
T ss_pred cCCCccCC
Confidence 56666765
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.5e-11 Score=116.60 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=142.6
Q ss_pred cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC-CC--cEEEEeCCCCCccceeeeecccccceEEEEEecCC
Q 011256 210 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
.+.++|..... ...+..+...+.+..|+|||+.|+..+. ++ .|.+||+.++. ...+..+ .+......|+|+|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-~~~lt~~---~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-REKVTSF---PGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-eEEecCC---CCCcCCeeECCCC
Confidence 56667765433 3445556778899999999998877654 33 58888887642 1222222 2334568999999
Q ss_pred CEEEE-EECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--cEEEEECCCCceeeeec
Q 011256 287 KYFVT-ASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 360 (490)
Q Consensus 287 ~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~ 360 (490)
+.|+. .+.+|. |+++|+.++.... +.. +........|+|||+.|+..+. +| .|+++|+.+++.... .
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~-----~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t 346 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-ITR-----HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-T 346 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc-----CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-e
Confidence 97765 455664 7888988776433 221 1134567899999987766543 33 577778877764332 2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEE
Q 011256 361 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 433 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 433 (490)
.........+|+|||++|+..+.+ + |.++|+.++... .+... .......|+|+|+.|+..+.+ ..+|-+
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 122233457899999998877654 3 666788776542 22221 112345799999998887654 345544
Q ss_pred eecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 434 ASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
+. .......+... .+.+...+|+|
T Consensus 423 ~~---~G~~~~~l~~~--~g~~~~p~Wsp 446 (448)
T PRK04792 423 SI---DGRFKARLPAG--QGEVKSPAWSP 446 (448)
T ss_pred EC---CCCceEECcCC--CCCcCCCccCC
Confidence 32 22223333322 44566777876
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3.8e-11 Score=118.21 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=136.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEE-EeCCCc--EEEEeCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGV-DT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSADKT--VRVWQGS 259 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~dg~--i~iwd~~ 259 (490)
+...+.+..|+|+|+.|+..+. ++ .|++||+.+++... +....+......|+|||+.|+. .+.+|. |.+||+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 3457788999999998877653 33 58888998776532 2222333457899999997664 566675 6677776
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEEC-CC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
++ ....+..+........|+|+++.++..+. ++ .|.++|+.+++...... . + ......+|+|||+.|
T Consensus 295 tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~---g--~~~~~~~~SpDG~~l 364 (448)
T PRK04792 295 TK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-E---G--EQNLGGSITPDGRSM 364 (448)
T ss_pred CC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-C---C--CCCcCeeECCCCCEE
Confidence 64 23334445556678899999998876654 33 57777887776433221 1 1 123456899999888
Q ss_pred EEEcC-CC--cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCe
Q 011256 337 GTGTS-EA--LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 337 ~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i 409 (490)
+..+. ++ .|.++|+.+++... +... .......|+|||+.|+..+.. + +.+++. ++.....+... ...+
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~ 439 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEV 439 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCc
Confidence 77654 33 46667887776432 3222 122345799999988776654 3 677786 44444444432 3455
Q ss_pred eEEEEcC
Q 011256 410 NSVDFDH 416 (490)
Q Consensus 410 ~~i~~s~ 416 (490)
...+|+|
T Consensus 440 ~~p~Wsp 446 (448)
T PRK04792 440 KSPAWSP 446 (448)
T ss_pred CCCccCC
Confidence 6677776
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.6e-11 Score=115.11 Aligned_cols=232 Identities=17% Similarity=0.228 Sum_probs=162.8
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCccceeeee
Q 011256 192 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
..-++.|-..++.-..|.+|-+.... |.... +. -...-..++++. ..++++.| ....|.-++++.+ ..+..+
T Consensus 99 feiLsDD~SK~v~L~~DR~IefHak~-G~hy~-~R-IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqG---rfL~P~ 171 (703)
T KOG2321|consen 99 FEILSDDYSKSVFLQNDRTIEFHAKY-GRHYR-TR-IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQG---RFLNPF 171 (703)
T ss_pred EEEeccchhhheEeecCceeeehhhc-Ceeee-ee-cCcCCccccccCCCccEEEee-cCcceEEEEcccc---cccccc
Confidence 33344444444444556666554321 21111 11 011223455543 44544444 4456888888887 666667
Q ss_pred cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCC-----CCceEEEEcCCCcEEEEEcCCCc
Q 011256 271 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRP-----EGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 271 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
....+.++++..++...+|++|+.+|.|.+||.+....+..+..... ..++ ..|+++.|+.+|-.+++|+.+|.
T Consensus 172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 76778999999999999999999999999999998877666653321 1222 34999999999999999999999
Q ss_pred EEEEECCCCceeeeec-CCCCCeEEEEEcCC--CCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 345 VKIWDVKSQANVAKFD-GHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~--~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
|.|||+++.+++..-. +..-+|..+.|.+. +..+++....-++|||-.+++....+.. ...++.+|+-|++-++
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~ 328 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMF 328 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceE
Confidence 9999999988775543 23458999999876 4455554443499999999999888876 5669999999999999
Q ss_pred EEEecC--eEEEEE
Q 011256 422 AVASAD--IRVYQV 433 (490)
Q Consensus 422 ~~~~~d--i~v~~~ 433 (490)
+++..+ +..|-+
T Consensus 329 f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 329 FTANESSKMHTYYI 342 (703)
T ss_pred EEecCCCcceeEEc
Confidence 999888 444544
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=8.6e-11 Score=109.87 Aligned_cols=287 Identities=13% Similarity=0.191 Sum_probs=183.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCcEEEEeccC--ccCEE-EEEEeeCCCEEEEE
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGV-----------DTNAVLFDRPSGQIVTTLSGH--SKKVT-SVKFVTEGDLFLTG 247 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~h--~~~v~-~l~~~~~~~~l~s~ 247 (490)
+++.-.+.|.-+.|||+.++|+|-+. ...++|||+.+|...+.+... ...+. -..||.|++++|.-
T Consensus 244 ~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 244 IQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred HHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe
Confidence 34444567889999999999998652 257999999999988877652 22222 35899999999887
Q ss_pred eCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCC
Q 011256 248 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPE 322 (490)
Q Consensus 248 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~ 322 (490)
.. .+|.||+...- .++..-.-.-..|....|+|.++.|+.-... ..+.+-.+.+++.+....... .
T Consensus 324 ~~-~sisIyEtpsf---~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-----V 394 (698)
T KOG2314|consen 324 TG-NSISIYETPSF---MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-----V 394 (698)
T ss_pred cc-ceEEEEecCce---eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee-----e
Confidence 76 46899986552 2222212234578889999998887764321 346666666666655543221 1
Q ss_pred CceEEEEcCCCcEEEEEc----------CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC----EEE
Q 011256 323 GYTSAAFHPDGLILGTGT----------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKL 388 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~i 388 (490)
.=..+.|..+|.+|+.-. .-..+.|+.++....-.....-...|...+|-|.|..+++-+... +.+
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeE
Confidence 113456677788777531 112355666655432222223456889999999999888766652 889
Q ss_pred EECCC-CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 389 WDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 389 wd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
|-+.+ ......+.... ....+.+.|+|.|++++++.-. +.+||.+. ..... .... .....+.+.|.|
T Consensus 475 Y~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~--a~~k~---~~~~-eh~~at~veWDP 547 (698)
T KOG2314|consen 475 YAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY--ADLKD---TASP-EHFAATEVEWDP 547 (698)
T ss_pred EEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecch--hhhhh---ccCc-cccccccceECC
Confidence 98873 22222222211 3567899999999999887532 77777532 11111 1111 123457899999
Q ss_pred CCCeEEEEeC------CCcEEEecCCCC
Q 011256 463 DAKYIAVGSM------DRNLRVFGLPGN 484 (490)
Q Consensus 463 ~~~~l~s~~~------dg~v~iw~~~~~ 484 (490)
.|+|+++++. |...+||++.+.
T Consensus 548 tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 548 TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CCCEEEEeeehhhhccccceEEEEeecH
Confidence 9999999875 455678888764
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.41 E-value=9.9e-10 Score=101.08 Aligned_cols=213 Identities=17% Similarity=0.175 Sum_probs=153.1
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEecc------C-----ccCEEEEE-Eee-CCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSG------H-----SKKVTSVK-FVT-EGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------h-----~~~v~~l~-~~~-~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
.||+.++. +..|.|++||..+..+...--+ . ..+..-+. |++ +|++++..|. |...|.+...+
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~-- 351 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG-- 351 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC--
Confidence 35665554 3457899999876544221111 0 01111122 433 7888888886 77777765543
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCC-eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
... --+|.+.|.-..+..+++-++.|..|| .+-++|.++++........ +.|.++..+++|+.++++...
T Consensus 352 --~~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l------g~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 352 --YSI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL------GNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred --eeE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc------cceEEEEEcCCCcEEEEEcCc
Confidence 111 235777798888888888999999999 8999999998865544432 679999999999999999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-----EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
..|.++|+.+++....-+...+-|+.+.|+|++++++-+--+| |++||+..++....-.. ...=.+-+|+|+
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d 499 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPD 499 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCC
Confidence 9999999999987655566678899999999999999887664 89999998776544433 223345678888
Q ss_pred CCEEEEEe
Q 011256 418 GSYLAVAS 425 (490)
Q Consensus 418 ~~~l~~~~ 425 (490)
+++|..-+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 88876554
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.5e-10 Score=113.22 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=135.0
Q ss_pred CCeEEEEecCCCCE---EEEEeCCC--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC-CC----cEEEEe
Q 011256 188 PGIVSLDIHYSKDV---IATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVWQ 257 (490)
Q Consensus 188 ~~I~~~~~~~~~~~---l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg----~i~iwd 257 (490)
..+.+-.|+|||+. +++...+| .|++.++..++... +....+......|+|||+.|+..+. +| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 45567799999974 23444443 57777887765433 2223444567899999998776553 23 344467
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEE--eCCC-CeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFY--DLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
+..+...........+........|+|+|+.|+..+ .+|...+| ++.. +.....+... ...+....|+|||
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-----~~~~~~p~wSPDG 338 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-----YRNSSCPAWSPDG 338 (428)
T ss_pred cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-----CCCccceeECCCC
Confidence 654211122222222233446789999999877765 46654444 4432 2222223211 1345678999999
Q ss_pred cEEEEEcCC---CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCcceeeeecCCCC
Q 011256 334 LILGTGTSE---ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 334 ~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~ 406 (490)
+.|+..+.+ ..|.+||+.+++... +......+....|+|||++|+....+ . |.++|+..++....... .
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~---~ 414 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG---S 414 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC---C
Confidence 988766443 369999998886643 33233467789999999988755433 2 89999987765443322 3
Q ss_pred CCeeEEEEcCCC
Q 011256 407 TPTNSVDFDHSG 418 (490)
Q Consensus 407 ~~i~~i~~s~~~ 418 (490)
+.+...+|+|-.
T Consensus 415 g~~~~p~Ws~~~ 426 (428)
T PRK01029 415 GEKRFPSWGAFP 426 (428)
T ss_pred CcccCceecCCC
Confidence 445677787743
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2e-12 Score=135.24 Aligned_cols=202 Identities=21% Similarity=0.343 Sum_probs=165.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
+.+.+-..|.++.-+|...+.+||+.||.|++|....++.+..+. .....|+.+.|+.+|+.+..+..||.+.+|....
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence 445556788899999999999999999999999998888777664 3347899999999999999999999999998874
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEE---CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
+.....+.|......+.|-. ..+++++ .++.+.+||..-......+. ..|..+++++++-|...+|+
T Consensus 2283 ----k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2283 ----KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred ----cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEEE
Confidence 67778888999999998874 6667664 46889999975433322221 36778999999999999999
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 403 (490)
+|+.+|.|++||++..+.++.+.. +. ...++++|+..| |+||++.....+..++..
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 999999999999999888877764 33 566888998888 999999988777777653
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.8e-10 Score=111.18 Aligned_cols=239 Identities=12% Similarity=0.106 Sum_probs=140.3
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCE--E-EEEeCCC--cEEEEeCCCCCccceeeeecccccceEEEEEe
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL--F-LTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 283 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~--l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 283 (490)
+.|.+.|...+. ...+......+.+-.|+|||+. + ++...+| .|.+.++.++. ...+.. ..+......|+
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~lt~---~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKKILA---LQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceEeec---CCCCccceEEC
Confidence 467777775443 3445545566778899999974 2 3444444 46777777642 223322 33445568999
Q ss_pred cCCCEEEEEEC-CC----eEEEEeCCCCe--EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEE--ECCC-
Q 011256 284 ATNKYFVTASL-DN----TWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIW--DVKS- 352 (490)
Q Consensus 284 ~~~~~l~s~~~-dg----~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iw--d~~~- 352 (490)
|||+.|+..+. +| .+..|++..+. ....+... ........+|+|||+.|+..+ .+|...+| ++..
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 99998887653 23 34446766531 12222211 112335679999998776654 46654444 5432
Q ss_pred CceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-
Q 011256 353 QANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD- 427 (490)
Q Consensus 353 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d- 427 (490)
+.....+..+...+....|+|||++|+..+.+ + |.+||+.+++..... .. ...+....|+|+|+.|+....+
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~--~~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TS--PENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CC--CCCccceEECCCCCEEEEEECCC
Confidence 23344444445567889999999988876654 2 999999887654322 21 2356778999999988765443
Q ss_pred --eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 428 --IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 428 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
..+|.++........+. . ..+.+...+|+|-.
T Consensus 393 g~~~L~~vdl~~g~~~~Lt---~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 393 NESELYLISLITKKTRKIV---I--GSGEKRFPSWGAFP 426 (428)
T ss_pred CCceEEEEECCCCCEEEee---c--CCCcccCceecCCC
Confidence 34444432222222222 1 13455677888743
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.4e-12 Score=118.98 Aligned_cols=289 Identities=12% Similarity=0.129 Sum_probs=187.2
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-------CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEE
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVR 254 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~ 254 (490)
-..+|...|..+.--.+.+-+++++.|++|++|.+.. ..+..+++.|..+|.++.|..+.++++++ ||.|+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 4567888888887777788999999999999998653 24667889999999999999888877754 78999
Q ss_pred EEeCCCCCccceeeeec--ccccceEEEEEecCCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 255 VWQGSEDGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
+||.--+.....+.--. +..+.|.|+.- -+...++.| +...+|+++|.+.+.....+......+....+.++++.+
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 99965542111111111 12223444321 123344444 678899999999999888877665556667889999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEE-EECCCCcceeeeecCCCCCCe
Q 011256 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL-WDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i-wd~~~~~~~~~~~~~~~~~~i 409 (490)
.|+.+++|-.+|.|.+.|.++|+.+..+.........++ .|....|+....+. +.+ |-...+........+. .+.
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp--epa 963 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP--EPA 963 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC--cch
Confidence 999999999999999999999999988875544444444 34455666555554 666 7554443332222211 111
Q ss_pred eEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 410 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 410 ~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
.- .-.-|.-|++.... +.||.-.........+..+....-.+..++++.-|-..-+..|+..|.|.+
T Consensus 964 hf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 HF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 00 01124444444433 566642111111122223333333667888988887777778888998876
No 266
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=2.1e-11 Score=122.08 Aligned_cols=195 Identities=18% Similarity=0.288 Sum_probs=154.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEE----EEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT----SVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~----~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.|....+.-....++.+..+..+.+||...+.....+........ -+-++++.-++++|+.-+.|.+|+.....
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-- 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-- 166 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC--
Confidence 344455555677888888999999999988777666653322111 12234555689999999999999988532
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
.-..+.+|.+.|..+.++-+|.+++++|.|.++++|++++.+... ....+|+..+..++|+|+ .+++++.|.+
T Consensus 167 -~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 167 -KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred -CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccccccceeEEEEeccc--eeEEeccceE
Confidence 222678999999999999999999999999999999999987665 224578899999999998 8999999999
Q ss_pred EEEEECCCCceeeeecCCCC-CeEEEEEcCCCCEEEEEeCCC-EEEEECCC
Q 011256 345 VKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 393 (490)
.++|+.. ++.+..+.+|.+ .|..++..++...+++++.|+ +++||+..
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999754 455557777754 799999999999999999998 99998753
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=3e-10 Score=106.66 Aligned_cols=228 Identities=16% Similarity=0.256 Sum_probs=156.2
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC--EEEE-----EeCCCcEEEEeCCCCCc
Q 011256 191 VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD--LFLT-----GSADKTVRVWQGSEDGN 263 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s-----~s~dg~i~iwd~~~~~~ 263 (490)
++..|++|..+.+- -..+.+.+|+..+.+.+.. .-|...|+.+.++|.+. .+++ +|.-+.|+||.....+.
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 57888887654332 2346799999876443322 23677899999998743 3433 34456799998764322
Q ss_pred cceeeeecccccceEEEEEecCCCE-EEEE--ECC---------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKY-FVTA--SLD---------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~--~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
...+..-.-....=..+.|++.|.- |+.+ .-| .++++.++....+...+.. .++|.++.|+|
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k------~GPVhdv~W~~ 280 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK------EGPVHDVTWSP 280 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC------CCCceEEEECC
Confidence 1222111112233345778877753 2222 223 3688888885555444432 28899999999
Q ss_pred CCcEEEE--EcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCcceeeeecCCC
Q 011256 332 DGLILGT--GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDS 405 (490)
Q Consensus 332 ~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~ 405 (490)
++.-|++ |..-..+.|||++ +.++..+ ..++-+++-|+|.|++++.++-+ | |-|||+.+.+.+..+...
T Consensus 281 s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-- 355 (566)
T KOG2315|consen 281 SGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-- 355 (566)
T ss_pred CCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--
Confidence 9976665 5566789999985 4555555 45778899999999999998877 4 999999998888887764
Q ss_pred CCCeeEEEEcCCCCEEEEEecC--------eEEEEE
Q 011256 406 ETPTNSVDFDHSGSYLAVASAD--------IRVYQV 433 (490)
Q Consensus 406 ~~~i~~i~~s~~~~~l~~~~~d--------i~v~~~ 433 (490)
..+-+.|+|||+++++++.. ++||++
T Consensus 356 --~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 --NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred --CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 34678999999999998753 899998
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=7.8e-11 Score=101.86 Aligned_cols=234 Identities=17% Similarity=0.166 Sum_probs=161.0
Q ss_pred CCCCeEEEEecC---CCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCc------cCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 186 SKPGIVSLDIHY---SKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHS------KKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 186 h~~~I~~~~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
-.+.+..+.|.. +|. .++-+..+|.|.+|..........+.+-. ....++.|++.+..++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345677777764 455 56667788999999765544444443221 12457788998999999999999985
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcC-C
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHP-D 332 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~ 332 (490)
-+... ...+.++..+.|.-+++...|+.. .+.+.+|+.|+.+..||++... .+.. ....|..+|.++.-+| .
T Consensus 148 v~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 148 VYETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----NSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred Eecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee----cceeeecceEEEecCCCC
Confidence 55433 334555678899999999999754 4689999999999999999333 2222 2345668899998887 6
Q ss_pred CcEEEEEcCCCcEEEEECCC-CceeeeecCCCCCeEEEEEcCC--CCEEEEEeCCCEEEEECCCCccee--eeec-CCCC
Q 011256 333 GLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNFR--SFES-SDSE 406 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~i~iwd~~~~~~~~--~~~~-~~~~ 406 (490)
+.++++|+.|-.|++||.|+ ++++..-. -.+.|..+.++|. +..|+++-.+|.+|-+........ .+.. ..+.
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 78999999999999999995 56655443 3478999999995 556777777788888877654321 1111 1123
Q ss_pred CCeeEEEEcCCCCEEEEEe
Q 011256 407 TPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~ 425 (490)
+-...-.|+....+|++++
T Consensus 302 Sl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 302 SLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ceeeccccccccceeeeee
Confidence 3344444544445677754
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=1.9e-09 Score=113.86 Aligned_cols=285 Identities=12% Similarity=0.187 Sum_probs=182.6
Q ss_pred CCeEEEEecCCCCEE--EEEeCCC--cEEEEeCCCC---cEEEEec-----cCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 188 PGIVSLDIHYSKDVI--ATGGVDT--NAVLFDRPSG---QIVTTLS-----GHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l--~~~~~dg--~i~iwd~~~~---~~~~~~~-----~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
..+...+|.+..+.+ +++.... .|.+...... +.+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356777777765533 3332222 2333322222 2333433 23567999999999999999999999999
Q ss_pred E----eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC---------------C--------CeE
Q 011256 256 W----QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---------------S--------GIC 308 (490)
Q Consensus 256 w----d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~---------------~--------~~~ 308 (490)
. +... ..+.....-...|.+++|+||+..++.++.++++.+.+-. . |+.
T Consensus 102 ~~~~~~~~~----~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 102 VREDPDPDE----DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEccCCCCC----ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 9 4443 2333333456789999999999999999999988875321 0 001
Q ss_pred EEEeecCC-------------------CCCCCCCceEEEEcCCCcEEEEEcC---C---CcEEEEECCCCceeeeecCCC
Q 011256 309 LTQVSDAG-------------------TDGRPEGYTSAAFHPDGLILGTGTS---E---ALVKIWDVKSQANVAKFDGHV 363 (490)
Q Consensus 309 ~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~l~~g~~---d---g~i~iwd~~~~~~~~~~~~~~ 363 (490)
..+|.... .......-..++|-.||.+||+.+. . ..++||+- .|....+-+.-.
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~ 256 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVD 256 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCC
Confidence 11110000 0002235567899999999999874 2 47999995 476655555444
Q ss_pred CCeEEEEEcCCCCEEEEEeCC--C--EEEEECCCCcceeeeecC--CCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeec
Q 011256 364 GAVTAISFSENGYYLATAAHD--G--VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASV 436 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d--~--i~iwd~~~~~~~~~~~~~--~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~ 436 (490)
+--.+++|-|.|+++++.... . |.+|. |++-.-..|... .....+..+.|++++..|++...+ +.+|....
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N- 334 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN- 334 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC-
Confidence 555678999999999988763 2 77776 444333344432 235678999999999999999887 99998732
Q ss_pred CCcceEeeeecCCCCCcceEEEEEcCCC-CeEEEEeCCCcEEEecC
Q 011256 437 KADWNCIKTFPDLSGTGKATCVKFGPDA-KYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~ 481 (490)
..|-....+... ....+..+.|+|.. ..|...+.+|.+..+++
T Consensus 335 -YHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 335 -YHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred -CEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 345444444432 13345569999954 44777776677755443
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=2.9e-11 Score=105.15 Aligned_cols=240 Identities=20% Similarity=0.326 Sum_probs=162.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-----cEEEEeccCc------------cCEEEEEEeeCCC--EEEEE
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-----QIVTTLSGHS------------KKVTSVKFVTEGD--LFLTG 247 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~------------~~v~~l~~~~~~~--~l~s~ 247 (490)
...|+++.|...|.++++|...|.|.+|..... +....+++|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 467999999999999999999999999976542 2233455654 4588899976544 57777
Q ss_pred eCCCcEEEEeCCCCC-------------------cc--------------------ceee-eecccccceEEEEEecCCC
Q 011256 248 SADKTVRVWQGSEDG-------------------NY--------------------DCKH-TLKDHTAEVQAVTVHATNK 287 (490)
Q Consensus 248 s~dg~i~iwd~~~~~-------------------~~--------------------~~~~-~~~~h~~~v~~l~~~~~~~ 287 (490)
+.|.+|++|.+.... .. .+.+ .-..|...|+++.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 889999999864420 00 0001 1135777788999998887
Q ss_pred EEEEEECCCeEEEEeCCCCeEEEEee---cCCCCCCCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceee----e-
Q 011256 288 YFVTASLDNTWCFYDLSSGICLTQVS---DAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVA----K- 358 (490)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~----~- 358 (490)
.++++ .|-.|.+|+++.......+. +........-|++..|+|. ...+...+..|.|++-|++...... .
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77775 56789999987544332222 2111112245788999995 4677778889999999998542110 1
Q ss_pred -----------ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCc-ceeeeecCCC----------CC---CeeEEE
Q 011256 359 -----------FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK-NFRSFESSDS----------ET---PTNSVD 413 (490)
Q Consensus 359 -----------~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~-~~~~~~~~~~----------~~---~i~~i~ 413 (490)
+.+-...|..+.|+++|+++++-+.-.|+|||.+..+ ++.++..+.. .. .-..+.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence 1122357889999999999998877789999998754 4555543311 11 123467
Q ss_pred EcCCCCEEEEEecC
Q 011256 414 FDHSGSYLAVASAD 427 (490)
Q Consensus 414 ~s~~~~~l~~~~~d 427 (490)
|+.+...+.+|+..
T Consensus 345 fSgd~~~v~sgsy~ 358 (460)
T COG5170 345 FSGDDKHVLSGSYS 358 (460)
T ss_pred ecCCcccccccccc
Confidence 77777777777655
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=5.2e-09 Score=110.55 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=188.9
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEE----eCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC-
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLF----DRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE- 260 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iw----d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~- 260 (490)
..+.|.++.+-++...++.+..+|.|.++ +..+... .....-...|.+++||||+.+|+..+.+|++.+.+..=
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 45689999999999999999999999999 5544322 22223456799999999999999999999888764110
Q ss_pred ---------C--Cc-------------------cce--------------eeeecccccceEEEEEecCCCEEEEEEC--
Q 011256 261 ---------D--GN-------------------YDC--------------KHTLKDHTAEVQAVTVHATNKYFVTASL-- 294 (490)
Q Consensus 261 ---------~--~~-------------------~~~--------------~~~~~~h~~~v~~l~~~~~~~~l~s~~~-- 294 (490)
. +. .+. ...+. +...-..|+|-.||.||++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 000 00111 3345567899999999998875
Q ss_pred -C---CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC---CCcEEEEECCCCceeeeec----CCC
Q 011256 295 -D---NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFD----GHV 363 (490)
Q Consensus 295 -d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~----~~~ 363 (490)
. ..++||+-+ |.....-.. . .+--.+++|-|.|++||+... ...|.+|. ++|-.-..|. ...
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~--v---~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEP--V---DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred CCCceeEEEEECCC-ceEEecccc--C---CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 2 579999976 543333221 1 122357899999999998754 34577776 4444333332 345
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEECCCCccee--eeecCCCCCCeeEEEEcCCCC-EEEEEec-C-eEEEEEe----
Q 011256 364 GAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESSDSETPTNSVDFDHSGS-YLAVASA-D-IRVYQVA---- 434 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~--~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d-i~v~~~~---- 434 (490)
..|..+.|++++..|+....+.|.+|-..+..-.. .+.... ...+..+.|+|... .|.+.+. + +..+++.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~ 383 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS 383 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence 68999999999999999988889999988765432 222221 33455599999643 3544444 3 4443332
Q ss_pred ecCC----cce----------EeeeecC-----------CCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 435 SVKA----DWN----------CIKTFPD-----------LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 435 ~~~~----~~~----------~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.... ... .+..|.. ..-...|.+++|++++..+++-..||.|.+|..+...
T Consensus 384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 1100 000 1111110 0125679999999998888999999999999866543
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1e-11 Score=115.80 Aligned_cols=205 Identities=24% Similarity=0.401 Sum_probs=149.7
Q ss_pred EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC----ccceeeeecccccceEEEEEecCCCEEEEEECCCe
Q 011256 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 297 (490)
Q Consensus 222 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 297 (490)
+..+.||+..|..++-..+.+-+++++.|++|++|.+...+ ...|..++..|..+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45678999999998877778889999999999999986543 234778889999999999999888887764 789
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE-cCCCcEEEEECCCCceeeeec-----CCCCCeEEEEE
Q 011256 298 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQANVAKFD-----GHVGAVTAISF 371 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~ 371 (490)
|.+||.--+..+.++......+....|.|+. +-+..+++.| +...+|+++|.+...-...++ +....+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999988887776655433332223333332 1244455554 778899999999887666553 34467899999
Q ss_pred cCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEE-EE
Q 011256 372 SENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV-YQ 432 (490)
Q Consensus 372 s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v-~~ 432 (490)
.+.|++++++-.+| |.+.|.|+++.+..+... ......++ .|..+.|+....+ +.| |.
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 99999999998888 999999999988777654 22222222 3555666655555 555 54
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=1e-09 Score=93.82 Aligned_cols=234 Identities=17% Similarity=0.140 Sum_probs=155.9
Q ss_pred EEEecC-----CCCEEEEEeCCCcEEEEeCCCCcE-EEEeccCccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 192 SLDIHY-----SKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 192 ~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.+.|.| .-.+|+.||..|...+|...+.+. ......|...|.-+.=.-+ .--+..++.|.++++.+++.+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455665 234899999999999999886544 3334445444432211112 224677889999999998775321
Q ss_pred ceeeeeccccc--ceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 265 DCKHTLKDHTA--EVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 265 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
. ..|.. .+.+++++++++++++.+....|..|.+.... .+...... .....-.+..|+.....+|++..
T Consensus 152 ~-----~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a---~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 152 F-----AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA---PTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred c-----eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec---ccCCCceeeeeccCcceEEEEec
Confidence 1 12333 38899999999999999999999999886543 22222211 12244578899999999999999
Q ss_pred CCcEEEEECCCCceeee-----ecCCCCCeEEEEEcCCCC--EEEEEeCCC-EEEEECCCCcceeeeecCCC------CC
Q 011256 342 EALVKIWDVKSQANVAK-----FDGHVGAVTAISFSENGY--YLATAAHDG-VKLWDLRKLKNFRSFESSDS------ET 407 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~-----~~~~~~~i~~l~~s~~~~--~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~------~~ 407 (490)
||++.|||++....... -..|.+.+..+.|++.|. +|+..-.-+ +.+.|+|+++....+..... ..
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq 303 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQ 303 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccc
Confidence 99999999987543222 234889999999998653 333332234 99999999887665554322 12
Q ss_pred CeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 408 PTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
.|..-.|+.++.-+.+.+.+ +.=|.+
T Consensus 304 ~ifgt~f~~~n~s~~v~~e~~~ae~ni 330 (344)
T KOG4532|consen 304 HIFGTNFNNENESNDVKNELQGAEYNI 330 (344)
T ss_pred ccccccccCCCcccccccchhhheeec
Confidence 36666777777666666655 544544
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=1.7e-08 Score=94.09 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=148.0
Q ss_pred ecCCCCEEEEEeC----------CCcEEEEeCCCCcEEEEeccCcc-------CEEEEEEeeCCCEEEEEe-C-CCcEEE
Q 011256 195 IHYSKDVIATGGV----------DTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTGS-A-DKTVRV 255 (490)
Q Consensus 195 ~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~l~s~s-~-dg~i~i 255 (490)
++|+++.|+++.. +..|.+||..+.+.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999997776654 78999999999999988874222 234788999999888766 3 689999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC-----CCCCceEEEEc
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG-----RPEGYTSAAFH 330 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~ 330 (490)
.|+.+. +.+..+.-. +...-...+ +..++ +-+.||......+................ ...+ .|.
T Consensus 133 vD~~~~---kvv~ei~vp-~~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~ 202 (352)
T TIGR02658 133 VDLEGK---AFVRMMDVP-DCYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYS 202 (352)
T ss_pred EECCCC---cEEEEEeCC-CCcEEEEec-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceE
Confidence 999886 444444321 111111122 12222 23345554444333221111111000000 0111 334
Q ss_pred C-CCcEEEEEcCCCcEEEEECCCC-----ceeeeecC-------CCCCeEEEEEcCCCCEEEEEe---------CC-C-E
Q 011256 331 P-DGLILGTGTSEALVKIWDVKSQ-----ANVAKFDG-------HVGAVTAISFSENGYYLATAA---------HD-G-V 386 (490)
Q Consensus 331 ~-~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~---------~d-~-i 386 (490)
+ +|.++++... |.|++.|+... .....+.. ..+.+.-++++++++.+++.. .. + |
T Consensus 203 ~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V 281 (352)
T TIGR02658 203 NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFL 281 (352)
T ss_pred cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEE
Confidence 5 8888888776 99999996443 22222211 234455699999998888743 11 3 9
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCC-EEEEEecC---eEEEEEeecCCcceEeeee
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD---IRVYQVASVKADWNCIKTF 446 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d---i~v~~~~~~~~~~~~~~~~ 446 (490)
.++|..+.+.+..+.. ...+..++++|+++ +|++.+.. +.|+|. ...+.+..+
T Consensus 282 ~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~----~t~k~i~~i 338 (352)
T TIGR02658 282 FVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA----ETGKELSSV 338 (352)
T ss_pred EEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC----cCCeEEeee
Confidence 9999999999998887 46789999999999 77766532 999997 455555555
No 275
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=4.4e-12 Score=124.37 Aligned_cols=266 Identities=20% Similarity=0.301 Sum_probs=186.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC--cEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~ 259 (490)
..+.|....+|++|+-+.+.|++|+..|.|++|++.+|.......+|..+|+-+.-+.+|..+++.+.-. -..+|+..
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 4556778999999999999999999999999999999999999999999999999999999766655433 46789886
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
... ...+++. .-.++.|+.....-+.|+......+||+.++..+.++... ..+....-++..|+|+..+++-
T Consensus 1176 s~~--~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1176 STG--GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred ccc--Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhhccccccCCCcceEee-
Confidence 532 4444443 3467788766555556666678899999999877664322 1122233378899998887763
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
|| .+||++..+.++.|......+ .-.|+|+|.-++..+ -|||+|+.+.++..+... -..+.|+..|.
T Consensus 1248 --dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~lLh~VP~Ld----qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1248 --DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFKLLHSVPSLD----QCAVTFNSTGD 1314 (1516)
T ss_pred --Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHHHHhcCcccc----ceEEEeccCcc
Confidence 55 379999988888886544222 335999999888775 489999998887776542 36788988888
Q ss_pred EEEEEec------CeEEEEEee---------cCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 420 YLAVASA------DIRVYQVAS---------VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 420 ~l~~~~~------di~v~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.++..-. ++.--+++. ....+..+.++.. ...+..++-+|...+|..--
T Consensus 1315 VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1315 VMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV---DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred chhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec---ccchhhhhcCCccceEEEEe
Confidence 7765541 122211110 0123334444443 45667777777777776643
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=4.7e-11 Score=115.09 Aligned_cols=288 Identities=14% Similarity=0.201 Sum_probs=189.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeccCc--cCEEEEEEeeCC--CEEEEEeCCCcEEEEeCCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHS--KKVTSVKFVTEG--DLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~--~~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~ 261 (490)
.+++.++.++|.|+-+|.++.-| +.+.|+.. +....-+. |. -.|-.+.|+|.. .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 46788999999999999988877 55556554 23222222 32 236677887743 34444444455678998765
Q ss_pred CccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
.....-..+.+|...|+.+.|+|+. ..+++++.|..+..||+++......... ........+.|+.....+.+.+
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~----~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS----SWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee----cccccCceeeecccCcchhhhc
Confidence 5445556677999999999999976 5888999999999999987654322211 1125567788987443444445
Q ss_pred CCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 341 SEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 341 ~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
....|.+||++.| .++..+++|...|+.+.|..- ...+.+++.|+ |+.||..+.......... ...+|..-.+-|-
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPF 256 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcceecccccc
Confidence 6678999999876 677888989889999998764 34566777777 999998875443222221 1566777777775
Q ss_pred CCEEEEE---ecC-eEEEEEeecCC------cceEeeeecCCCCCcceEEEEEcCC----------CCeEEEEeCCCcEE
Q 011256 418 GSYLAVA---SAD-IRVYQVASVKA------DWNCIKTFPDLSGTGKATCVKFGPD----------AKYIAVGSMDRNLR 477 (490)
Q Consensus 418 ~~~l~~~---~~d-i~v~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l~s~~~dg~v~ 477 (490)
|.-.+.- +.+ +.+++-+.... ....+..|.+| ...|....|-.. .-.|++-+.|..++
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 5432221 111 33333322111 23456677776 666665555332 12599999999999
Q ss_pred EecCCC
Q 011256 478 VFGLPG 483 (490)
Q Consensus 478 iw~~~~ 483 (490)
+|-+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998864
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=1.7e-08 Score=98.07 Aligned_cols=266 Identities=16% Similarity=0.157 Sum_probs=157.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
.++.+++++.+|.|..+|..+|+.+..+........... .++..++.++.+|.+..+|..++ +.+...... +.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~-~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDG---KELWRAKLS-SEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCC---cEeeeeccC-cee
Confidence 367888888999999999999998877654433222222 25677888899999999998776 333333211 222
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceee
Q 011256 278 QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 357 (490)
Q Consensus 278 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 357 (490)
.+.-.. .+..++.++.+|.+..||.++|+.+................+..+. +..++.+..+|.+..+|.++|+.+.
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 211111 3557777888999999999999988776533110000000111111 2467788889999999999998765
Q ss_pred eecCCC--C--C---eEEEEEcC--CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 358 KFDGHV--G--A---VTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 358 ~~~~~~--~--~---i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
...... + . ...+.-+| .+..+++++.++ +..||..+++......... ..... ..+..+++++.+
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCce--EeCCEEEEECCC
Confidence 432110 0 0 00010011 244666666676 9999999988765554221 11222 245667777666
Q ss_pred --eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 428 --IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 428 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+..++...+...|. ..... .....+... .+..|++++.+|.|++|+..+++
T Consensus 289 G~l~~~d~~tG~~~W~----~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 289 GVVVALDRRSGSELWK----NDELK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CeEEEEECCCCcEEEc----ccccc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 55555533322222 21110 111122222 45688889999999999987654
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=3.7e-08 Score=106.19 Aligned_cols=239 Identities=12% Similarity=0.188 Sum_probs=153.8
Q ss_pred EEEEecCC-CCEEEEEeCCCcEEEEeCCCCcEEEEecc-C-------------ccCEEEEEEeeCCCEEEEEe-CCCcEE
Q 011256 191 VSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSG-H-------------SKKVTSVKFVTEGDLFLTGS-ADKTVR 254 (490)
Q Consensus 191 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h-------------~~~v~~l~~~~~~~~l~s~s-~dg~i~ 254 (490)
..+++++. +.++++-..++.|.+||.. +..+..+.+ . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35678774 5677777788899999975 554444332 1 12357889998888655554 457899
Q ss_pred EEeCCCCCccceeeeeccc-----------------ccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCC
Q 011256 255 VWQGSEDGNYDCKHTLKDH-----------------TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 316 (490)
++|..++ .+.++.+- -.....++++| ++..+++.+.++.|++||..++.... +...+
T Consensus 650 ~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 650 EIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 9998663 22222110 11346799999 45666777788999999998876432 21110
Q ss_pred ----CCC------CCCCceEEEEcCCCc-EEEEEcCCCcEEEEECCCCceeeeec-------------CC--------CC
Q 011256 317 ----TDG------RPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKFD-------------GH--------VG 364 (490)
Q Consensus 317 ----~~~------~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~~--------~~ 364 (490)
..+ .-.....++++|++. ++++.+.++.|++||+.++....... .. -.
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 000 113456799999987 55556667899999998765321110 00 11
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC-----------CCCCCeeEEEEcCCCCEEEEEecC--eEE
Q 011256 365 AVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------DSETPTNSVDFDHSGSYLAVASAD--IRV 430 (490)
Q Consensus 365 ~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----------~~~~~i~~i~~s~~~~~l~~~~~d--i~v 430 (490)
...+++|+++|.++++.+.++ |++||..++......... ..-.....++++++|+++++.+.+ |++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 246889999998877777776 999999876544322211 011356789999999977776665 999
Q ss_pred EEEee
Q 011256 431 YQVAS 435 (490)
Q Consensus 431 ~~~~~ 435 (490)
|++..
T Consensus 885 id~~~ 889 (1057)
T PLN02919 885 LDLNK 889 (1057)
T ss_pred EECCC
Confidence 98754
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=4.2e-10 Score=108.34 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=164.7
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC------------ccceeeeecccccceEEEEEecCCCEEEEEECCC
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG------------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN 296 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 296 (490)
.....|+.|+.+..++++|+.||.++|..+.+.. +...-+++.+|.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3457899999999999999999999999876532 1233456789999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCcee-eeecCCCCCeEEEEEcCCC
Q 011256 297 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV-AKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~ 375 (490)
.|.+|-+-.+.....+... ...+.|.+++|+.||..++....||.|.+=.+...+.- ..+++ .....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiNn---RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINN---RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhhC---cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence 9999999888765554422 23477899999999999999999999877665433211 11222 234578899998
Q ss_pred CEEEEEeCCC-EEEEECCCCc-----cee--eeec--CCCCCCeeEEEEc--------CCCCEEEEEecCeEEEEEeecC
Q 011256 376 YYLATAAHDG-VKLWDLRKLK-----NFR--SFES--SDSETPTNSVDFD--------HSGSYLAVASADIRVYQVASVK 437 (490)
Q Consensus 376 ~~l~~~~~d~-i~iwd~~~~~-----~~~--~~~~--~~~~~~i~~i~~s--------~~~~~l~~~~~di~v~~~~~~~ 437 (490)
..++.+-.+| +.+||....- .-. .... ......|..+.|. |+...|+++-.++++--+...+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 8888887788 9999975321 101 1110 0112235556653 5778888888775554443322
Q ss_pred CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC
Q 011256 438 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 473 (490)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 473 (490)
.....+... .-.+....|+++|..|+.+|.|
T Consensus 249 D~~Pvv~dt-----gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 249 DPEPVVVDT-----GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCCeEEec-----ccEeecceecCCCcEEEEccCc
Confidence 222222221 3468899999999999998865
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.20 E-value=5.6e-08 Score=104.83 Aligned_cols=242 Identities=14% Similarity=0.146 Sum_probs=153.8
Q ss_pred EEEEeeC-CCEEEEEeCCCcEEEEeCCCCCccceeeeecc--------------cccceEEEEEecCCCEEEEEEC-CCe
Q 011256 234 SVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--------------HTAEVQAVTVHATNKYFVTASL-DNT 297 (490)
Q Consensus 234 ~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~~l~s~~~-dg~ 297 (490)
.+++++. +.++++-+.++.|.+||.... .+..+.+ .-.....+++.++++.|+++.. .+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 5777764 567777778889999997652 2222221 1123578999998887666654 578
Q ss_pred EEEEeCCCCeEEEEeecCCCCC------------CCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecC---
Q 011256 298 WCFYDLSSGICLTQVSDAGTDG------------RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDG--- 361 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--- 361 (490)
|+++|+.++... .+...+..+ .-.....++++| ++.++++.+.++.|++||..++... .+.+
T Consensus 648 Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 648 LREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 999998876533 322111000 012346799999 5677777778899999998776532 2211
Q ss_pred ------------CCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeee-----------cCC--------CCCC
Q 011256 362 ------------HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFE-----------SSD--------SETP 408 (490)
Q Consensus 362 ------------~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~-----------~~~--------~~~~ 408 (490)
.-.....|+|+|+|..|+++..+ + |++||+.++....... ... ....
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 01235679999999866655554 4 9999998754321110 000 0113
Q ss_pred eeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCC------------CCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 409 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL------------SGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
...++++++|.++++.+.+ |++|+... .... .+.+. ........++++++|+.+++-+.++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~t----g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPAT----KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCC----CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 4689999999877766666 88888632 2211 11110 0123567899999999888888999
Q ss_pred cEEEecCCCCCC
Q 011256 475 NLRVFGLPGNDA 486 (490)
Q Consensus 475 ~v~iw~~~~~~~ 486 (490)
.|++|++..+..
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=7.4e-10 Score=97.92 Aligned_cols=254 Identities=12% Similarity=0.205 Sum_probs=171.1
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
..+..++||.+.|++...-|...-+++.+.|.+++||--...+++.+. .......+++++.+++....|++|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-IYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-hhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345678899999999888887778999999999999965443322211 1122456789999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEE
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
-+.+...-....+... ...|...+..+.|+-...++++.+.|..+.---.+.+..+..+.- ...-+++.|.-. +..
T Consensus 94 efs~sedfnkm~~~r~-~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKD-YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEhhhhhhhcchhhh-hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 8876543222222211 335668889999998888999999888775544455543322210 011112222111 344
Q ss_pred EEeCCC-EEEEECC--CCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcc
Q 011256 380 TAAHDG-VKLWDLR--KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK 454 (490)
Q Consensus 380 ~~~~d~-i~iwd~~--~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
.|...+ |.+-.+. ....+..+..+ ...+.++.|++....|++|..+ +.+|++.-.. .......+ |...
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~~el~g--h~~k 242 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTAYELQG--HNDK 242 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCc---ceeeeecc--chhh
Confidence 444444 4443333 33445555544 7899999999999999999998 9999983221 12222333 4778
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 455 ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 455 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|..+...+--+.|++++.||.|.+|+.+...
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 8888888888899999999999999987543
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=1.1e-08 Score=95.30 Aligned_cols=264 Identities=15% Similarity=0.216 Sum_probs=166.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCC---------------CcEEEEeCCCCcEEEEeccCccC--EE-EEEEeeCCCEEEEEe
Q 011256 187 KPGIVSLDIHYSKDVIATGGVD---------------TNAVLFDRPSGQIVTTLSGHSKK--VT-SVKFVTEGDLFLTGS 248 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~s~s 248 (490)
.+.|..+.|+|.+++|.+-+.. ..+++||..+|.++..+.+...+ .. -+.|+-+..+++-..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 4578899999999999986533 35999999999999998876665 45 678888877655442
Q ss_pred CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC--EEEE-----EECCCeEEEEeCCCCeEEEEe---------
Q 011256 249 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK--YFVT-----ASLDNTWCFYDLSSGICLTQV--------- 312 (490)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s-----~~~dg~i~iwd~~~~~~~~~~--------- 312 (490)
...++|+++...-.......+. ...|....|+|.++ .|+. .+.++.+++|.+..+..+...
T Consensus 151 -~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 151 -GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred -cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3468888862211111111111 24566667776532 2222 234556666655432211110
Q ss_pred -----------------------------------ec---CCCCCCCCCceEEEEcCCCcEEEE--EcCCCcEEEEECCC
Q 011256 313 -----------------------------------SD---AGTDGRPEGYTSAAFHPDGLILGT--GTSEALVKIWDVKS 352 (490)
Q Consensus 313 -----------------------------------~~---~~~~~~~~~v~~~~~~~~~~~l~~--g~~dg~i~iwd~~~ 352 (490)
.. .......++|...+|.|.++.|++ |..+..+.++|++.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 00 000123478889999998876665 45678899999987
Q ss_pred CceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCccee-eeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 353 QANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFR-SFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 353 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
. .... .....=+.+.|+|.+++++.++-+ | +-+||........ .+.. ....-+.|+|+++++.+....
T Consensus 308 N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~----~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 308 N-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG----LNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred c-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec----CCceEeeccCCceEEEecCCC
Confidence 6 3322 234455778899999999998777 3 9999987543333 4443 334567899999999887543
Q ss_pred --------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 428 --------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 428 --------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
++||++.. ... ...+.+.|.|.|++..+.+.++
T Consensus 381 ~k~~~Dn~i~l~~v~g-----~~~---------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 381 EKLRVDNSIKLWDVYG-----AKV---------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred cccccCcceEEEEecC-----chh---------hhhhhccccCCcccceeeccCC
Confidence 88998721 111 1335566777776666555444
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=4.3e-09 Score=90.09 Aligned_cols=193 Identities=9% Similarity=0.020 Sum_probs=138.1
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEE
Q 011256 201 VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 280 (490)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 280 (490)
-+..++.|.++++.++.-+.....+.-..-.+.++.++++++++++.+....|..|.++..+.+..........+.=.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 34556777888888765443322221111237899999999999999999999999998866544443444555666788
Q ss_pred EEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--cEEEEEcCCCcEEEEECCCCceeee
Q 011256 281 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LILGTGTSEALVKIWDVKSQANVAK 358 (490)
Q Consensus 281 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~ 358 (490)
.|+.....||++..||++.|||++.............+.|.+.+..+.|++.| .+|+..-.-+.+.+.|+++++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 99999999999999999999999987665555444455688999999999866 3555555567899999999876555
Q ss_pred ecC-------CC-CCeEEEEEcCCCCEEEEEeCCCEEEEECCC
Q 011256 359 FDG-------HV-GAVTAISFSENGYYLATAAHDGVKLWDLRK 393 (490)
Q Consensus 359 ~~~-------~~-~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~ 393 (490)
+.. |. ..|..-.|+.++.-+.+.+++.+.=|++.+
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence 432 22 237777888777777776666555555543
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.17 E-value=4.6e-10 Score=101.39 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=135.9
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCc----EEEEeccCccCEEEEEEeeCCCEEEEE---eCCCcEEEEeCCCCC
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ----IVTTLSGHSKKVTSVKFVTEGDLFLTG---SADKTVRVWQGSEDG 262 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~---s~dg~i~iwd~~~~~ 262 (490)
...+..++.++++|++..+....++++.... +...+.. ...-+++.|..+......+ +....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 3455677888899998888887666654332 2222221 2223455555444443333 3445555665543
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.+...+-+|-..++.++|+||+++++++..|..|++-.......+..+ ..||...|..+++-++. .|++|+.|
T Consensus 142 --~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----clGH~eFVS~isl~~~~-~LlS~sGD 214 (390)
T KOG3914|consen 142 --GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----CLGHKEFVSTISLTDNY-LLLSGSGD 214 (390)
T ss_pred --cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----ccccHhheeeeeeccCc-eeeecCCC
Confidence 233445689999999999999999999999999999888776666655 34677889999988654 58999999
Q ss_pred CcEEEEECCCCceeeeecCCC--CCeE----------EEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCe
Q 011256 343 ALVKIWDVKSQANVAKFDGHV--GAVT----------AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~--~~i~----------~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 409 (490)
++|++||+.+|+.+.++.-.. .+|. .+.|......++..+++. +.++.....+....+... ..++
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~v~l~~--~~qv 292 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSLVPLVS--EVQV 292 (390)
T ss_pred CcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCceeEEEEe--cccc
Confidence 999999999999887764211 1111 112222223334344443 777776665544333222 3445
Q ss_pred eEEEEc
Q 011256 410 NSVDFD 415 (490)
Q Consensus 410 ~~i~~s 415 (490)
.++++-
T Consensus 293 ~d~a~~ 298 (390)
T KOG3914|consen 293 WDLALL 298 (390)
T ss_pred eeeeee
Confidence 666653
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.17 E-value=4.6e-08 Score=85.22 Aligned_cols=201 Identities=14% Similarity=0.228 Sum_probs=122.8
Q ss_pred EEEecCCCEEEEEECCCeEEEEeCCCCe--EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceee
Q 011256 280 VTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA 357 (490)
Q Consensus 280 l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 357 (490)
++.+.+|+.||+. .|..|.|=..+..- .+..... .......-+-++|+||+.+||.+...|+|++||+.. ..+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqV--pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQV--PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF 78 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEec--CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE
Confidence 4556667766654 45556554443321 1111111 112224568899999999999999999999999864 3333
Q ss_pred eecC-------CCCCeEEEEEcCCC------CEEEEEeCCC-EEEEECC-----CCcceeeeecCCC-CCCeeEEEEcCC
Q 011256 358 KFDG-------HVGAVTAISFSENG------YYLATAAHDG-VKLWDLR-----KLKNFRSFESSDS-ETPTNSVDFDHS 417 (490)
Q Consensus 358 ~~~~-------~~~~i~~l~~s~~~------~~l~~~~~d~-i~iwd~~-----~~~~~~~~~~~~~-~~~i~~i~~s~~ 417 (490)
.+.+ -...|..+.|.+.. ..|++-...| ++-|-+. ..+....|....+ ...|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 4332 22467777776532 2344443444 5555432 2333445544322 568999999999
Q ss_pred CCEEEEEecC-------------eEEEEEeecCCcceEeeee----------------c-------CCCCCcceEEEEEc
Q 011256 418 GSYLAVASAD-------------IRVYQVASVKADWNCIKTF----------------P-------DLSGTGKATCVKFG 461 (490)
Q Consensus 418 ~~~l~~~~~d-------------i~v~~~~~~~~~~~~~~~~----------------~-------~~~~~~~v~~~~~s 461 (490)
.++|++|+.. +..|.+-.....+..+... . .......|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 9999888643 5566653222111111110 0 01125578899999
Q ss_pred CCCCeEEEEeCCCcEEEecCCCC
Q 011256 462 PDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 462 ~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
|||..||+...+|.|.+|++++-
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcc
Confidence 99999999999999999999863
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.16 E-value=3.9e-08 Score=95.47 Aligned_cols=260 Identities=16% Similarity=0.137 Sum_probs=153.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
++..+++++.+|.++.+|..+|+.+....... .+.+.-.. .+..++.++.+|.+..||..++ +.+..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG---~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATG---ERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCC---ceeeEEccCCCce
Confidence 46677888899999999999999887665332 22221111 3456777888999999999876 3333332211111
Q ss_pred -----EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCceEEEEcC--CCcEEEEEcCCCcEEEE
Q 011256 278 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW 348 (490)
Q Consensus 278 -----~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~g~~dg~i~iw 348 (490)
.+.... +..++.+..+|.+..+|.++|+.+.........+.. ..+..+.-+| .+..+++++.+|.++.|
T Consensus 179 ~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 179 TLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred eecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111122 346778888999999999999876654321111000 0000111111 34567778889999999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 349 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
|..+++.+...... ....... .+..+++++.++ |..+|..+++.+....... .....+... .+..+++++.+
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~ 329 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFE 329 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCC
Confidence 99999877665421 1222222 456777777777 9999999887765542211 111222222 36688888877
Q ss_pred --eEEEEEeecCCcceEeeeecCCCCCcce-EEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 428 --IRVYQVASVKADWNCIKTFPDLSGTGKA-TCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 428 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
+.+++. .+.+.+..+..+ ...+ .+..+. ++ .|+.++.||.|+.|
T Consensus 330 G~l~~~d~----~tG~~~~~~~~~--~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSR----EDGSFVARLKTD--GSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEEC----CCCCEEEEEEcC--CCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 555554 334444444432 2122 222332 33 57888899999876
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=5.7e-09 Score=101.66 Aligned_cols=235 Identities=14% Similarity=0.077 Sum_probs=167.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC------------CEEEEEeCCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG------------DLFLTGSADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~------------~~l~s~s~dg~i~iw 256 (490)
.-.+++|+|.| +||.|+ ...|.+.|..+-+.++.+..|...|+.+.|.|-. -+|+++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 46788999865 566655 3578899999999999999999999999998721 157778888999999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecC---C-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHAT---N-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 331 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 331 (490)
|.... ..+..+..|..++..+.|-+. . ..+++-....++.+|+..+|+......-. .....|+.+.|
T Consensus 95 d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-----~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 95 DFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-----HEILSCFRVDPF 166 (1062)
T ss_pred Eehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-----CcceeeeeeCCC
Confidence 99876 455667788999999999763 3 46777777889999999999988766532 15567789998
Q ss_pred CCcEEEEEcCCCcEEEEECCC-------CceeeeecCCCC----------------------C---eEEEEEcCC-CCEE
Q 011256 332 DGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVG----------------------A---VTAISFSEN-GYYL 378 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~----------------------~---i~~l~~s~~-~~~l 378 (490)
|.+.+..-+..|.+.+-+.-. ++..+.-..|.. - .-.++|+|. .+.+
T Consensus 167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 667777777788887776521 222222221111 0 112466776 4455
Q ss_pred EEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 379 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 379 ~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+..-..++.|+|++-..++..+.......++..+--+|....|++...| +.+|..
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 6666666999999988888888776433444444445556778888888 677765
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.15 E-value=3.8e-07 Score=82.82 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=144.5
Q ss_pred EEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEe-eCCCEEEEEeCCCcEEEEeCCCCCccceeee
Q 011256 192 SLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-TEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 192 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 269 (490)
+..|.+ ++.++++-...+.|+.|+..++.... +.... ...+.+. +++. |+.+..+ .+.++|..++ ....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCC-cEEEEee
Confidence 567887 67777777788999999998776543 22222 6677777 5654 5555554 4566688774 2233333
Q ss_pred ec--c-cccceEEEEEecCCCEEEEEECC--------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE-
Q 011256 270 LK--D-HTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG- 337 (490)
Q Consensus 270 ~~--~-h~~~v~~l~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 337 (490)
.. . .....+.+++.|+|++.++.... |.|..++.. ++........ ...+.++|+|+++.|+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~------~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL------GFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE------SSEEEEEEETTSSEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc------ccccceEECCcchheee
Confidence 31 1 34578899999999977776543 568888877 5544333322 4568999999998665
Q ss_pred EEcCCCcEEEEECCCCce-------eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCe
Q 011256 338 TGTSEALVKIWDVKSQAN-------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i 409 (490)
+-+..+.|..|++..... ...+....+..-.+++..+|++.++....+ |.++|.. ++.+..+... ...+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~ 227 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRP 227 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCE
Confidence 556778899999863221 122222223478899999998888777666 9999987 8888888776 3478
Q ss_pred eEEEE-cCCCCEEEEEe
Q 011256 410 NSVDF-DHSGSYLAVAS 425 (490)
Q Consensus 410 ~~i~~-s~~~~~l~~~~ 425 (490)
++++| .++...|++.+
T Consensus 228 t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEESTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEe
Confidence 99999 46767666654
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.14 E-value=1.5e-09 Score=92.41 Aligned_cols=196 Identities=16% Similarity=0.271 Sum_probs=116.9
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE------------EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI------------VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
|+.+.++. ...|+++..++.+..+....+.+ ...+..|+++-.+-+.+-.++-+++++.||.+.+++
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55555553 34556666565555544332222 222223333322222233456799999999999998
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEEC-----CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP- 331 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 331 (490)
.+.. ......+..-...-.+.++...++.+.++.. -+..+.|+++..+....-. .. ...|++++-+|
T Consensus 118 ~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~---~~--~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 118 TDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK---KA--LDAVTALCSHPA 190 (319)
T ss_pred chHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc---cc--cccchhhhCCcc
Confidence 7652 1222222211111122223334555554432 2345556655433222111 11 13489999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCC
Q 011256 332 DGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~ 393 (490)
...++++|+.||.+-+||.+... +...+..|+.+|+.+-|+| ++..|+++++|| +.-||..+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45788899999999999999874 3445678999999999999 488999999999 99999765
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.6e-08 Score=95.85 Aligned_cols=191 Identities=10% Similarity=0.034 Sum_probs=123.3
Q ss_pred CeEEEEecCCCCE-EEEEeC---CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEE-EeCC--CcEEEEeCCCC
Q 011256 189 GIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSAD--KTVRVWQGSED 261 (490)
Q Consensus 189 ~I~~~~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~d--g~i~iwd~~~~ 261 (490)
.+..-.|+|+|+. ++..+. +..|+++|+.+++...... ..+......|+|||+.++. .+.+ ..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 554333 3569999998876654433 4555667889999986554 4434 45777787664
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEEC-CC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
. ...+..+........|+|+|+.|+..+. .| .|.+.|+.++........ + . ....|+|||+.|+.
T Consensus 268 ---~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g--~--~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 268 ---T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----G--K--NNSSVSTYKNYIVY 335 (419)
T ss_pred ---c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----C--C--cCceECCCCCEEEE
Confidence 2 2233333333345679999987776654 23 688889887766433321 1 1 12489999998877
Q ss_pred EcCC---------CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC----EEEEECCCC
Q 011256 339 GTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKL 394 (490)
Q Consensus 339 g~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~ 394 (490)
.... ..|.+.|+.++... .+... .......|+|||+.++..+..+ +.++++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6543 36888898877643 33322 2334688999999887766542 677777543
No 291
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=4.6e-10 Score=118.16 Aligned_cols=214 Identities=17% Similarity=0.280 Sum_probs=162.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 011256 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP 321 (490)
Q Consensus 242 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 321 (490)
+.+.....++...-|..+.. -..+..+-..|.++.-||...+.++|+.||.+++|....+..+..+...+ .
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~-----~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g---~- 2251 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGA-----SVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG---N- 2251 (2439)
T ss_pred ccCCcccCCccccceecccc-----eeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---c-
Confidence 34444445555555654432 12234456688999999999999999999999999999999888887543 2
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCcce
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNF 397 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~ 397 (490)
..|+.+.|+.+|+.+..+..||.+.+|... .++....+.|....+.+.|-. ..+++++.. + +.+||.-.....
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc
Confidence 789999999999999999999999999986 677778888999999998865 566665433 3 999997654332
Q ss_pred eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 398 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
..+. ..|...++++++-|..+.|++|+.+ +++||+ ...+....+.. +. ...++++|+..|.
T Consensus 2329 s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~----rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2329 SLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI----RQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred ceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeeh----HHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence 2222 3347889999999999999999998 999998 33444443322 44 5578999999999
Q ss_pred EEEecCCCC
Q 011256 476 LRVFGLPGN 484 (490)
Q Consensus 476 v~iw~~~~~ 484 (490)
++||++..-
T Consensus 2392 ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2392 IKIWRLSEF 2400 (2439)
T ss_pred eEEEEcccc
Confidence 999999753
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.11 E-value=3.2e-09 Score=92.71 Aligned_cols=250 Identities=18% Similarity=0.316 Sum_probs=164.2
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--ccceeeeecccc------------cceEEEEEecCC--CEEEEE
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDHT------------AEVQAVTVHATN--KYFVTA 292 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~~~~~--~~l~s~ 292 (490)
...|+++.|...|.+|++|...|.|.+|.-+... .++....+++|. ..|..|.|..++ ..|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999765432 123334455554 357888887654 478888
Q ss_pred ECCCeEEEEeCCCCeEE-------------------------------------EEee-cCCCCCCCCCceEEEEcCCCc
Q 011256 293 SLDNTWCFYDLSSGICL-------------------------------------TQVS-DAGTDGRPEGYTSAAFHPDGL 334 (490)
Q Consensus 293 ~~dg~i~iwd~~~~~~~-------------------------------------~~~~-~~~~~~~~~~v~~~~~~~~~~ 334 (490)
+.|.+|++|.+...... .... ......|+..+.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999987543110 0000 001234667788999999888
Q ss_pred EEEEEcCCCcEEEEECCCCc---eeeeecCCC-----CCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcce----e--
Q 011256 335 ILGTGTSEALVKIWDVKSQA---NVAKFDGHV-----GAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNF----R-- 398 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~----~-- 398 (490)
.++++ .|-.|.+|++.-.. .+..+++|. .-|++..|+|. ...+.-++..| |++-|+|..... .
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77775 46779999886432 222334443 35888999996 33444444445 999999943211 1
Q ss_pred --eeecC------CCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCC----------CCcce---E
Q 011256 399 --SFESS------DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS----------GTGKA---T 456 (490)
Q Consensus 399 --~~~~~------~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~----------~~~~v---~ 456 (490)
.+... .....|..+.|+++|+|+++-+.. ++||++...+ .++++.+.|. ....| .
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k---~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK---NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc---CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11111 113568899999999999998887 9999985433 3444443321 12223 3
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 457 CVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 457 ~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.+.||.|.+.+.+|+.....-||-..
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEecCCcccccccccccceeeeccc
Confidence 47788898999999988888777643
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=5.6e-09 Score=102.38 Aligned_cols=182 Identities=17% Similarity=0.247 Sum_probs=134.0
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
..++|+++ .+++|+.|+.+|.|++++.... . .+...|... ..+|.++++|+.||+|.|..+-+....
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 44667766 4678999999999999987653 2 333345443 557999999999999999999888877
Q ss_pred EEeecCCCCCCCCCceEEEEcCC-----CcEEEEEcCCCcEEEEECCC--CceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPD-----GLILGTGTSEALVKIWDVKS--QANVAKFDGHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
.++... .++.+++++|+ .+.+++|+..| +.++.-+- .+.-..+....|+|.++.| .|.+++-++
T Consensus 107 ~~~df~------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 107 TQYDFK------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred eeEecC------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 766543 77999999998 47899999988 77775331 1111134456789999999 688999999
Q ss_pred CCCEEEEECCCCcceeeeecCCC----CCCeeEEEEcCCCCEEEEEecC-eEEEEEe
Q 011256 383 HDGVKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASAD-IRVYQVA 434 (490)
Q Consensus 383 ~d~i~iwd~~~~~~~~~~~~~~~----~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 434 (490)
+.||+|||....+.+..++.+.. ......+.|.++.+ |+.|-.+ |+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99999999998877666654421 22345678876555 4555555 9998886
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=6.6e-07 Score=81.23 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=137.9
Q ss_pred EEEEee-CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEe
Q 011256 234 SVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQV 312 (490)
Q Consensus 234 ~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 312 (490)
++.|.+ ++.++++-...+.|..|+..++ ....+... ....+.+...+..++.+..++ +.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----~~~~~~~~--~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----EVEVIDLP--GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEEESS--SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----eEEEEecC--CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEe
Confidence 578887 6777777777899999998774 22222212 277788883335555555544 455599988765544
Q ss_pred ecCCCCCCCCCceEEEEcCCCcEEEEEcCC--------CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
............+.+++.++|++.++.... |.|..++.. ++...... .-...+.|+|+|+++.|+++...
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 432111133678899999999977775533 568888877 55433333 34567899999999988766555
Q ss_pred -C-EEEEECCCCcc----eeee-ecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEE
Q 011256 385 -G-VKLWDLRKLKN----FRSF-ESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATC 457 (490)
Q Consensus 385 -~-i~iwd~~~~~~----~~~~-~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 457 (490)
+ |..|++..... ...+ .........-.++++.+|++.++.....+|+.++. ....+..+... ...+++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p---~G~~~~~i~~p--~~~~t~ 229 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP---DGKLLREIELP--VPRPTN 229 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET---TSCEEEEEE-S--SSSEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC---CccEEEEEcCC--CCCEEE
Confidence 4 88888864322 1222 22211234788999999988777655544444432 24455544442 347899
Q ss_pred EEE-cCCCCeEEEEe
Q 011256 458 VKF-GPDAKYIAVGS 471 (490)
Q Consensus 458 ~~~-s~~~~~l~s~~ 471 (490)
++| .++.+.|+..+
T Consensus 230 ~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEESTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 999 46766665543
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.6e-07 Score=91.83 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=183.3
Q ss_pred ccCCCCCeEEEEecCCC------------CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeC---C-CEEEE
Q 011256 183 HKTSKPGIVSLDIHYSK------------DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE---G-DLFLT 246 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~-~~l~s 246 (490)
...|++.|+.+.|.|-. -+||++...|.|.+||...+..+..+..|..+|..++|-+. . .+|+.
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Lla 130 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLA 130 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEE
Confidence 44567889999998721 26788888999999999999989999999999999999773 3 46777
Q ss_pred EeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEE------------------------
Q 011256 247 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFY------------------------ 301 (490)
Q Consensus 247 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iw------------------------ 301 (490)
-....++.+|+..+++ .............|+.+.| +.+.|...+..|.+.+.
T Consensus 131 Ih~ss~lvLwntdtG~---k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 131 IHGSSTLVLWNTDTGE---KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred ecCCcEEEEEEccCCc---eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 7777899999988863 3333332233444555555 22333333333433333
Q ss_pred --------------------------------------------------eCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 302 --------------------------------------------------DLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 302 --------------------------------------------------d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
|++-..++...... .+.+.-+.+-|
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-----r~~akfv~vlP 282 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-----RGGAKFVDVLP 282 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-----cCCcceeEecc
Confidence 33322222222211 13344566666
Q ss_pred CC--cEEEEEcCCCcEEEEECCC----------------Cceeeee---c------------------------------
Q 011256 332 DG--LILGTGTSEALVKIWDVKS----------------QANVAKF---D------------------------------ 360 (490)
Q Consensus 332 ~~--~~l~~g~~dg~i~iwd~~~----------------~~~~~~~---~------------------------------ 360 (490)
++ ..|+++..||.+.+|-.+. +..+..+ +
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~ 362 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ 362 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence 55 5788999999999986543 1111100 0
Q ss_pred ------------------------------------------CCCCCeEEEEEcC-----------CC-------CEEEE
Q 011256 361 ------------------------------------------GHVGAVTAISFSE-----------NG-------YYLAT 380 (490)
Q Consensus 361 ------------------------------------------~~~~~i~~l~~s~-----------~~-------~~l~~ 380 (490)
+|....++....| .| .+++.
T Consensus 363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAv 442 (1062)
T KOG1912|consen 363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAV 442 (1062)
T ss_pred hhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEe
Confidence 2333333333222 11 25677
Q ss_pred EeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----------eEEEEEeecCCcceEeeeecC
Q 011256 381 AAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----------IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 381 ~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----------i~v~~~~~~~~~~~~~~~~~~ 448 (490)
|...| |.++|+.++.....+..+ ...|.++.|-....++-.+.+. +.|-++.++-. ...+....
T Consensus 443 GT~sGTV~vvdvst~~v~~~fsvh--t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls--k~fR~l~~ 518 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVAASFSVH--TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS--KRFRGLQK 518 (1062)
T ss_pred ecCCceEEEEEecchhhhhhhccc--ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc--cccccCCC
Confidence 88888 999999999888888777 7789999998766665544332 33444432211 11121122
Q ss_pred CCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 449 LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 449 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
....+|..+..|..|+||+..-.|.-+-+||+.+
T Consensus 519 -~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 519 -PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred -CCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 2367899999999999999999999999999854
No 296
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=1.6e-07 Score=86.89 Aligned_cols=215 Identities=14% Similarity=0.162 Sum_probs=143.9
Q ss_pred eeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecc--------cccceEEEE-Eec-CCCEEEEEECCCeEEEEeCCCCe
Q 011256 238 VTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD--------HTAEVQAVT-VHA-TNKYFVTASLDNTWCFYDLSSGI 307 (490)
Q Consensus 238 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------h~~~v~~l~-~~~-~~~~l~s~~~dg~i~iwd~~~~~ 307 (490)
+.||+.++. +.-|.|.+||..+....+.-.-+.- ...+..-+. |++ +|++++..|. |...+.+...+-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 346775554 3457899999877431111111000 011111111 222 5788888877 677777766665
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG- 385 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~- 385 (490)
.+.. ++...|.-..+..++.-++.|..|| .+-|||.++++. ..+...-+.|.++..+++|++++++.+..
T Consensus 353 ~iqv-------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e 424 (668)
T COG4946 353 SIQV-------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE 424 (668)
T ss_pred eEEc-------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE
Confidence 5433 2336688888888888899999999 899999987764 45556778999999999999999988877
Q ss_pred EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC------eEEEEEeecCCcceEeeeecCCCCCcceEEEE
Q 011256 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 459 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 459 (490)
|.++|+.+++....-... .+-|+.+.|+|+++++|.+--+ |++|++.. ......... .+.=.+-+
T Consensus 425 l~vididngnv~~idkS~--~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~----~Kiy~vTT~---ta~DfsPa 495 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSE--YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG----GKIYDVTTP---TAYDFSPA 495 (668)
T ss_pred EEEEEecCCCeeEecccc--cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC----CeEEEecCC---cccccCcc
Confidence 999999998764333322 5779999999999999988654 89999832 222221111 22234567
Q ss_pred EcCCCCeEEEEe
Q 011256 460 FGPDAKYIAVGS 471 (490)
Q Consensus 460 ~s~~~~~l~s~~ 471 (490)
|.||+++|.--+
T Consensus 496 FD~d~ryLYfLs 507 (668)
T COG4946 496 FDPDGRYLYFLS 507 (668)
T ss_pred cCCCCcEEEEEe
Confidence 899999877644
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=4.4e-07 Score=88.33 Aligned_cols=200 Identities=12% Similarity=0.052 Sum_probs=122.6
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCE-EEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEec
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 284 (490)
..|.+-|.... ..+.+.... .+....|+|||+. ++..+.+ ..|.++|+.++.. .. +....+......|+|
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~---lt~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EK---IASSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EE---EecCCCcEEeeEECC
Confidence 35555555333 233333233 6788999999984 6654443 4588888877421 22 222444566778999
Q ss_pred CCCEEEEE-EC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--cEEEEECCCCceeee
Q 011256 285 TNKYFVTA-SL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAK 358 (490)
Q Consensus 285 ~~~~l~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~ 358 (490)
||+.++.. +. +..|.++|+.++.... +... ........|+|||+.|+..+. .| .|+++|+.+++....
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~-----~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNY-----PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEEE-cccC-----CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 99876644 33 3568888988776433 3211 112234579999986666543 33 688889887765433
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC---------C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 359 FDGHVGAVTAISFSENGYYLATAAHD---------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~~~l~~~~~d---------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
... +. ....|+|+|++|+..+.. . |.+.|+..+.. ..+... .......|+|||+.|+..+..
T Consensus 317 t~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~---~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 317 VFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN---GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC---CCcCCeEECCCCCEEEEEEcc
Confidence 321 11 124899999988776542 2 78888877654 333322 223358899999988877654
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.4e-09 Score=94.49 Aligned_cols=244 Identities=15% Similarity=0.157 Sum_probs=169.8
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC---CcEEEEeccCccCEEEEEEeeCCCEEEEEeC-CCcEEEEeCCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS---GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSED 261 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~ 261 (490)
|++.|+.+... ..+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++.++.|++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 56667766544 468999999999999997543 1345566788999999999999999999887 999999998764
Q ss_pred CccceeeeecccccceEEEEEecCC--CEEEE-EECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATN--KYFVT-ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
.-.. ...+....+.+.++ .++.. ..+++ .-.+|.+.++|-....+..... ..-|..+|.++.+.+-+..+++
T Consensus 87 Dmin-miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f---kklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 87 DMIN-MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF---KKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred chhh-hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee---cccccCceEEEEeeccccceee
Confidence 2111 11111222222222 12211 13333 3457899999977665433332 3346689999999999999999
Q ss_pred EcCCCcEEEEECCC------Cceee---------eecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 339 GTSEALVKIWDVKS------QANVA---------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 339 g~~dg~i~iwd~~~------~~~~~---------~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
....|.|.-|.... .+... .+........++.|+|+|..+.+-+.|. |+++++++++.++.+..
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 99999999998762 11111 1223456788999999999999999887 99999998775544332
Q ss_pred CC-------------------------------CCCCeeEEEEcCCCCEEEEEecC-eEEEEEee
Q 011256 403 SD-------------------------------SETPTNSVDFDHSGSYLAVASAD-IRVYQVAS 435 (490)
Q Consensus 403 ~~-------------------------------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~ 435 (490)
.. ....-..+.|+.+|++|+.|+-- |+|.++++
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t 306 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT 306 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence 10 12345678899999999999876 89988854
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.02 E-value=2.8e-09 Score=105.65 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=131.3
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCC
Q 011256 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 364 (490)
Q Consensus 285 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 364 (490)
++..++.|+....+..+|+++.+......... .+++- +-.+++++++|...|+|.+-|.++.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a-----~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA-----SGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC-----CceEE--EEecCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence 45678888888889999999887766554321 23333 344678999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCC---------C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC-CEEEEEecC--eEEE
Q 011256 365 AVTAISFSENGYYLATAAHD---------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG-SYLAVASAD--IRVY 431 (490)
Q Consensus 365 ~i~~l~~s~~~~~l~~~~~d---------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~ 431 (490)
.|..+.. .|+.|++|+.. . |+|||+|+.+.+..+..+. ...-+.|.|.- ..+++++.. ..+.
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---CchhhhhcccccceEEEEecccceeec
Confidence 9988766 68899988753 3 8999999988887777652 23456677753 334444433 5555
Q ss_pred EEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 432 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+..........+..+ +.....+..++++++|+.|+.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 522111211222222 22245599999999999999999999999998
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-08 Score=100.31 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=132.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
...|+|++++ +.+++.|.-+|.|++++... .. .+...|+.. .-+|.++++|+.||+|.|-.+.++. .
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~---~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD---E 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc---c
Confidence 4567888887 78999999999999998753 33 333345543 5589999999999999999887753 3
Q ss_pred eeeecccccceEEEEEecC-----CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 267 KHTLKDHTAEVQAVTVHAT-----NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
..++. ...++.+++++|+ .+.+++||.-| +.++.-+=-....... .....++|.++.|. |+++|-++.
T Consensus 106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~---l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV---LSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee---eecCccceEEEEec--CcEEEEecC
Confidence 33332 4568999999997 46899999988 7766532111111111 11233789999996 678999887
Q ss_pred CCcEEEEECCCCceeeeecCCCCC------eEEEEEcCCCCEEEEEeCCCEEEEECCC
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGA------VTAISFSENGYYLATAAHDGVKLWDLRK 393 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~------i~~l~~s~~~~~l~~~~~d~i~iwd~~~ 393 (490)
+| |++||+.+++.+..+...... -..+.|.++ ..|+.|-.+.|+|..+++
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEec
Confidence 77 999999998888777543332 245677654 577888888899988873
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=6.5e-07 Score=78.17 Aligned_cols=207 Identities=15% Similarity=0.227 Sum_probs=126.3
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-------CccCEEEEEEeeCC------CEEEEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEG------DLFLTG 247 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~------~~l~s~ 247 (490)
++.+...+.=.-++||||+.+||.+...|+|++||+.. ..+..+.. -..+|..+.|.+.. ..|++-
T Consensus 37 qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 37 QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE
Confidence 34444455667899999999999999999999999864 33333331 23567777785532 246777
Q ss_pred eCCCcEEEEeCCC--CCccceeeeec---ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 011256 248 SADKTVRVWQGSE--DGNYDCKHTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 322 (490)
Q Consensus 248 s~dg~i~iwd~~~--~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 322 (490)
..+|.++-|-+.. ...+...+.+. .+...|.++.++|..+.|++||.... +.+. ......
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~---------s~a~~~ 180 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM---------SKASSC 180 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc---------cccccc
Confidence 7888888777532 33445555544 24678999999999998888765322 0000 000012
Q ss_pred CceEEEEcCCCcE--EEEEcCCCc------EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC
Q 011256 323 GYTSAAFHPDGLI--LGTGTSEAL------VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 323 ~v~~~~~~~~~~~--l~~g~~dg~------i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 393 (490)
++++-.+-.+..+ .++...|+. ..+|.+-+.+...........|..|..||||..|++...+| |.+|++..
T Consensus 181 GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 181 GLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 2222222111110 111111211 12333322222211122457899999999999999999999 99999999
Q ss_pred CcceeeeecC
Q 011256 394 LKNFRSFESS 403 (490)
Q Consensus 394 ~~~~~~~~~~ 403 (490)
.+....+...
T Consensus 261 L~~~~~W~~~ 270 (282)
T PF15492_consen 261 LRLQRSWKQD 270 (282)
T ss_pred chhhcccchh
Confidence 8887777654
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.3e-07 Score=92.01 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=132.4
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccc-eEEEEEecCCCEEEEEECCC-----eEEEEeCC
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHATNKYFVTASLDN-----TWCFYDLS 304 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~ 304 (490)
.|+| |++.+..++.|+.+|.|.+++-.- .....++.+... |..+....+.++|++.+.|+ .+++|+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4444 477888999999999998886432 455667777666 55554443446888877765 48999986
Q ss_pred CC------eEE--EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC----CCceeeeecCCCCCeEEEEEc
Q 011256 305 SG------ICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK----SQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 305 ~~------~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~~~~~i~~l~~s 372 (490)
.. .++ ..+........+.++.+++++.+-+.+++|-.+|.|..+.-. .+....-......+|+.+.+.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 43 233 122222233346789999999999999999999999988421 122222222345799999999
Q ss_pred CCCCE-EEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEe
Q 011256 373 ENGYY-LATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA 434 (490)
Q Consensus 373 ~~~~~-l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 434 (490)
.++.. ++++....|.+|.+.... ........++.+..|..+++...-+++++.. +.+|+.+
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd 243 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSD 243 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEecCceEEEEcCC
Confidence 98877 566666669999998443 2222223336788999998876645555555 9999863
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=4.2e-10 Score=110.79 Aligned_cols=219 Identities=16% Similarity=0.264 Sum_probs=157.3
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCC--e
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--T 297 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~ 297 (490)
+...++..|+...+|++|+.+.+.|+.|+..|.|++|++.++ .......+|..+|+.+.-+.+|..+++.+.-. .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc---cccccccccccccccccccCCcceeeeeccccCch
Confidence 445677788999999999999999999999999999999987 56667789999999999999998777665433 4
Q ss_pred EEEEeCCC-CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee-c---CCCCCeEEEEEc
Q 011256 298 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-D---GHVGAVTAISFS 372 (490)
Q Consensus 298 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~---~~~~~i~~l~~s 372 (490)
..+|++.+ +...+.+ ..-.++.|+.....-+.|+......+||+.++.++.++ . +....-++..|+
T Consensus 1169 saLW~~~s~~~~~Hsf---------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HHHhccccccCccccc---------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 67899864 2333333 33467888876655666777778999999999877663 2 122334788999
Q ss_pred CCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCC
Q 011256 373 ENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGT 452 (490)
Q Consensus 373 ~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
|+..+++- || .+||+|..+.++.|.... ....-.|+|+|.-++..+ .||++ .++..+...+..
T Consensus 1240 P~D~LIln---dG-vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINS---EIwD~----RTF~lLh~VP~L--- 1302 (1516)
T KOG1832|consen 1240 PCDTLILN---DG-VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINS---EIWDM----RTFKLLHSVPSL--- 1302 (1516)
T ss_pred CCcceEee---Cc-eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeec---hhhhh----HHHHHHhcCccc---
Confidence 99887763 33 589999988877776532 222345899999888877 57887 444444444332
Q ss_pred cceEEEEEcCCCCeEE
Q 011256 453 GKATCVKFGPDAKYIA 468 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~ 468 (490)
.-..+.|+..|..++
T Consensus 1303 -dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred -cceEEEeccCccchh
Confidence 224556666665443
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.8e-07 Score=82.15 Aligned_cols=256 Identities=9% Similarity=0.092 Sum_probs=145.0
Q ss_pred EEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CE
Q 011256 211 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KY 288 (490)
Q Consensus 211 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~ 288 (490)
+++.+..+.+....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++. .++..+..+ ..+++++|.-+. ++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcce
Confidence 55555555555666778888999999999776 7889999999999999985 566666666 789999998766 57
Q ss_pred EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEE------cCCCcEEEEEcCCCcEEEEECCC--C--ceeee
Q 011256 289 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF------HPDGLILGTGTSEALVKIWDVKS--Q--ANVAK 358 (490)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~g~~dg~i~iwd~~~--~--~~~~~ 358 (490)
+..|...|.|.+||++..+........ .....+|..++. .+.|.+++....+ +..|.+.- + .++..
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a--~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVA--NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhh--hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence 778888999999999876533221111 001133333332 2334444444332 44555432 1 22222
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCC--C---EEE----EECCCCcceeeeecCC-----C-CCCeeEEEEcCCCCEEEE
Q 011256 359 FDGHVGAVTAISFSENGYYLATAAHD--G---VKL----WDLRKLKNFRSFESSD-----S-ETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~~~~l~~~~~d--~---i~i----wd~~~~~~~~~~~~~~-----~-~~~i~~i~~s~~~~~l~~ 423 (490)
+. ..+...++++.+-.+.++..... + ++. -|.+++..+....... . ...-..+.-.++.++++.
T Consensus 327 le-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 22 34555666666644444333221 0 111 1112222211111000 0 001111222345566666
Q ss_pred EecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC--CCCeEEEEeCCCcEEEecCCC
Q 011256 424 ASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP--DAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 424 ~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.+.+ +.+||. .....+.++.. ..+|..++... .+.||++-. |..++||..+.
T Consensus 406 ~gd~tn~lil~D~----~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 406 VGDSTNELILQDP----HSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred ecCCcceeEEecc----chhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5554 899997 55666666654 45677776543 344666654 67789987653
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.95 E-value=2.5e-06 Score=76.88 Aligned_cols=232 Identities=18% Similarity=0.234 Sum_probs=159.1
Q ss_pred EEEEecC-CCCEEEEEeCCCc-EEEEeCCCCcEEEEeccCccCEE--EEEEeeCCCEEEEEeC-----CCcEEEEeCCCC
Q 011256 191 VSLDIHY-SKDVIATGGVDTN-AVLFDRPSGQIVTTLSGHSKKVT--SVKFVTEGDLFLTGSA-----DKTVRVWQGSED 261 (490)
Q Consensus 191 ~~~~~~~-~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~ 261 (490)
..++.+| .+..++.+-.-|+ ..+||..+++....+....+.-. .-.|++||++|++.-. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence 3677888 4556666665554 67889999988877654333221 3579999999998643 48899999983
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEEC------------------CCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL------------------DNTWCFYDLSSGICLTQVSDAGTDGRPEG 323 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 323 (490)
.+..+..+..|.-.-..+.+.|++..|+++.. +..+.+.|..+|+.+.+.... ...|...
T Consensus 87 -~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~~lS 164 (305)
T PF07433_consen 87 -GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLHQLS 164 (305)
T ss_pred -CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-ccccccc
Confidence 34777788877777788899999987777632 235667788888888776532 2345578
Q ss_pred ceEEEEcCCCcEEEEEcCCC-------cEEEEECCCCceeeee-------cCCCCCeEEEEEcCCCCEEEEEeCCC--EE
Q 011256 324 YTSAAFHPDGLILGTGTSEA-------LVKIWDVKSQANVAKF-------DGHVGAVTAISFSENGYYLATAAHDG--VK 387 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~d~--i~ 387 (490)
+..+++.++|..++..-..| .|.+++. +..+..+ ..-.+.|-+|++++++.++++++-.+ +.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 99999999998777655444 2344433 2222222 22346789999999999888877765 99
Q ss_pred EEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEE
Q 011256 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 433 (490)
Q Consensus 388 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 433 (490)
+||..++..+...... .+..++..+++ ++++.+. ..++.+
T Consensus 243 ~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~-G~~~~~ 282 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ-GQLIRL 282 (305)
T ss_pred EEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC-ccEEEc
Confidence 9999999887776653 35666666666 4444443 445544
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=1.7e-08 Score=91.40 Aligned_cols=164 Identities=19% Similarity=0.254 Sum_probs=111.6
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc-cceeeeecccccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCe
Q 011256 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGI 307 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~ 307 (490)
+..+..++.+++|+++..+....++++..... .++..... -...-+++.|..+......+..-| .+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 33445567788888888777777777665432 22222222 222334555555555555554444 44455544433
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee-cCCCCCeEEEEEcCCCCEEEEEeCCC-
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG- 385 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~- 385 (490)
+.. ..+|-+.++.++|+||+++|+++..|..|++-.....-.+..+ -||...|..++.-++ +.|++++.|+
T Consensus 144 ~~~------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 144 CEP------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cch------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc
Confidence 322 3367788999999999999999999999999887665555555 569999999998765 5678888887
Q ss_pred EEEEECCCCcceeeeecC
Q 011256 386 VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~ 403 (490)
|++||+++++.+.++...
T Consensus 217 lr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDLS 234 (390)
T ss_pred EEEEecccCCcccccchh
Confidence 999999999988766543
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.4e-08 Score=91.60 Aligned_cols=217 Identities=18% Similarity=0.169 Sum_probs=152.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcEEEEeccCccCEEEEEE-eeCCC---EEEEE-eCCCcEEEE
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHSKKVTSVKF-VTEGD---LFLTG-SADKTVRVW 256 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~~---~l~s~-s~dg~i~iw 256 (490)
...|-..|.+++.+.++-++.+++. |..++++|+.+-..+.-++--.- -..++| ...|. .++.+ -.+|.+.|+
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~Vv 127 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVV 127 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEE
Confidence 3456778899999999999999877 99999999876554432221111 112223 22331 33333 357899999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC------CeEEEEeec----CCCCCCCCCceE
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS------GICLTQVSD----AGTDGRPEGYTS 326 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~----~~~~~~~~~v~~ 326 (490)
|-..+.. +....-.-|..+|.++.+.+.+..+++....|.|..|..+. ......+.. ...........+
T Consensus 128 D~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 128 DGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred CCcCCcC-ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 8766432 22333346999999999999999999999999999999873 111111110 011122356789
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec--------------------------------CCC-CCeEEEEEcC
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--------------------------------GHV-GAVTAISFSE 373 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------~~~-~~i~~l~~s~ 373 (490)
+.|+|+|..+.+-+.|..|+++++++|+.++.+. .|. ..-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 9999999999999999999999999998766542 111 2345678999
Q ss_pred CCCEEEEEeCCCEEEEECCCCcceeeee
Q 011256 374 NGYYLATAAHDGVKLWDLRKLKNFRSFE 401 (490)
Q Consensus 374 ~~~~l~~~~~d~i~iwd~~~~~~~~~~~ 401 (490)
.|++|+-++-=||++.++.++...+.+.
T Consensus 287 s~~flly~t~~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 287 SGNFLLYGTILGIKVINLDTNTVVRILG 314 (558)
T ss_pred CCCEEEeecceeEEEEEeecCeEEEEec
Confidence 9999999999899999999887766554
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=1.3e-08 Score=90.21 Aligned_cols=174 Identities=15% Similarity=0.249 Sum_probs=125.8
Q ss_pred EEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC--Ccccee
Q 011256 192 SLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED--GNYDCK 267 (490)
Q Consensus 192 ~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~ 267 (490)
.++|+-+ |-. ++.|.+-.|-+-|+.+|.. +.|. ..+.|.++.|...+++++.|+.+|.|..+|+... ++..+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3456543 223 4445566788888887643 2333 5677999999988999999999999999999764 223455
Q ss_pred eeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeE---EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 268 HTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGIC---LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
..+. |...|+++..-. ++++|++.+.+|+|++||++--++ +.++..+.. .....-+.+++....+++++.|.
T Consensus 293 ~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN---~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 293 QRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN---LSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred EEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc---cccccccccccccceEEEccCee
Confidence 5543 889999998776 788999999999999999987777 666653321 12233445566777888899999
Q ss_pred cEEEEECCCCceeeeecCCC----CCeEEEEEc
Q 011256 344 LVKIWDVKSQANVAKFDGHV----GAVTAISFS 372 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~----~~i~~l~~s 372 (490)
..+||.++.+..+.++.... ..+.+++|.
T Consensus 369 ytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999999999888875322 245556664
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=6.1e-07 Score=89.11 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=140.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC-EEEEEEeeCCCEEEEEeCCCc-----EEEEeCCCC-
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-VTSVKFVTEGDLFLTGSADKT-----VRVWQGSED- 261 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~s~dg~-----i~iwd~~~~- 261 (490)
.|+| |++++..++.|+.+|.|.+++-. -+.+..++.+... |..+....+..+|++.+.|+. ++||+++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 46778899999999999888752 3445777777777 444433334468888877754 899998754
Q ss_pred -Cc-cceee--eecc-----cccceEEEEEecCCCEEEEEECCCeEEEEeCCC--Ce-EEEEeecCCCCCCCCCceEEEE
Q 011256 262 -GN-YDCKH--TLKD-----HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS--GI-CLTQVSDAGTDGRPEGYTSAAF 329 (490)
Q Consensus 262 -~~-~~~~~--~~~~-----h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~--~~-~~~~~~~~~~~~~~~~v~~~~~ 329 (490)
++ ..++. .+.. ...++.+++++.+-+.+++|-.+|.|..+.-+- .. ....+.. ....+|+.+++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~----~~~~pITgL~~ 179 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH----RGKEPITGLAL 179 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec----cCCCCceeeEE
Confidence 12 34441 1112 345789999999999999999999999885321 11 1111111 22378999999
Q ss_pred cCCCcE-EEEEcCCCcEEEEECCCCce-eeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeee
Q 011256 330 HPDGLI-LGTGTSEALVKIWDVKSQAN-VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE 401 (490)
Q Consensus 330 ~~~~~~-l~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~ 401 (490)
..++.. +++++ -..|.+|.+....+ ...+..|...++|..|++....+++++...+.+||.........+.
T Consensus 180 ~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 998876 33333 35689999874442 4446777889999999987666888877789999988666555555
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=1.2e-06 Score=79.14 Aligned_cols=214 Identities=16% Similarity=0.112 Sum_probs=131.3
Q ss_pred CCcEEEEeCCCCcEEEEeccC--ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecC
Q 011256 208 DTNAVLFDRPSGQIVTTLSGH--SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
+|.|..||..+|+.+.....- .....+. ..+++..+++++.++.+..||..++ +.+..+.. ...+.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~-~~~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTG---KVLWRFDL-PGPISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTS---EEEEEEEC-SSCGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCC---CEEEEeec-ccccccee-eec
Confidence 688999999999998877531 1222211 2336667888889999999999886 44443332 11111111 224
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEe-ecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCC
Q 011256 286 NKYFVTASLDNTWCFYDLSSGICLTQV-SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVG 364 (490)
Q Consensus 286 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 364 (490)
+..+++++.++.+..+|..+|+.+... ... .... ..........++..++++..++.|..+|+++|+.+........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS-SPPA-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-S-SCTC-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeecccc-cccc-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 667777778899999999999998884 322 1111 1122222333477888888899999999999999877755332
Q ss_pred C----------eEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEE
Q 011256 365 A----------VTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVY 431 (490)
Q Consensus 365 ~----------i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~ 431 (490)
. +..-.+..++ .++.++.++ +..+|+.+++...... . ..+.. .....+..|++++.+ +.+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 2 1222233345 666666666 4444999998653222 1 12222 135678888888755 7777
Q ss_pred EEee
Q 011256 432 QVAS 435 (490)
Q Consensus 432 ~~~~ 435 (490)
++.+
T Consensus 228 d~~t 231 (238)
T PF13360_consen 228 DLKT 231 (238)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7633
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=5.8e-08 Score=96.56 Aligned_cols=181 Identities=21% Similarity=0.312 Sum_probs=139.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
++..++.|+-...+..+|+.+.+..+...-..+.|.-++. +++++++|...|+|.+-|..+- +.++++..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~---~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF---ETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC---ceeeeeeccccce
Confidence 4456777777778889999888877766655555665654 7889999999999999998775 8899999999999
Q ss_pred EEEEEecCCCEEEEEEC---------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC-CcEEEEEcCCCcEEE
Q 011256 278 QAVTVHATNKYFVTASL---------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKI 347 (490)
Q Consensus 278 ~~l~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~i 347 (490)
..+..+ |+.|++||. |..|+|||++..+.+..+... ....-+.|+|. ...+++.+..|...+
T Consensus 221 SDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 221 SDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc------cCchhhhhcccccceEEEEecccceee
Confidence 888774 899999886 456899999987766555432 23356778884 357788888999999
Q ss_pred EE---CCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEEC
Q 011256 348 WD---VKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 348 wd---~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~ 391 (490)
-| +.+. ..+..+......+..++++++|..|+.|..+| |.+|.-
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 99 3333 22333444455699999999999999999998 999973
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.2e-07 Score=84.35 Aligned_cols=242 Identities=14% Similarity=0.136 Sum_probs=143.1
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~ 259 (490)
+...|...|..++|+|..+ ++..++.+..|+|.|+.+...+..+..+ ..+++++|.-|. +++..|-.+|.|.|||+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5556778899999999776 7888999999999999999999998888 789999997755 478888899999999998
Q ss_pred CCCccceeeeecccccceEEEEEec------CCCEEEEEECCCeEEEEeCCCCe--EEEEeecCCCCCCCCCceEEEEcC
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHA------TNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~------~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
......+...-.-...+|..++.-+ .+.+++..+.+ +..|.+.-.. ....... +.++...++..++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel----e~pG~cismqy~~ 340 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL----EPPGICISMQYHG 340 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc----CCCcceeeeeecC
Confidence 7543222221112234555554432 33444444332 3445543211 1111111 1124455566665
Q ss_pred CCcEEE-EEcCCC------cEE-EEECCCCceeeeec-CC-CC------CeEEEEEcCCCCEEEEEeCCC--EEEEECCC
Q 011256 332 DGLILG-TGTSEA------LVK-IWDVKSQANVAKFD-GH-VG------AVTAISFSENGYYLATAAHDG--VKLWDLRK 393 (490)
Q Consensus 332 ~~~~l~-~g~~dg------~i~-iwd~~~~~~~~~~~-~~-~~------~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~ 393 (490)
-.+.++ +.-.+. .|- --|...|..+.... .+ .+ .-..+.-.++.++++..+++. +.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 434333 322211 010 11222333322211 11 00 001122233456666555553 99999999
Q ss_pred CcceeeeecCCCCCCeeEEEEcC--CCCEEEEEecC-eEEEEE
Q 011256 394 LKNFRSFESSDSETPTNSVDFDH--SGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 394 ~~~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~d-i~v~~~ 433 (490)
......+.. ..++..++... .+.||++-..+ ++||..
T Consensus 421 ~evvQ~l~~---~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 421 FEVVQTLAL---SEPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred hheeeeccc---CcceeecceeecCCcchhhheecceEEEEec
Confidence 998888877 46777776543 35678887877 888875
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=4.3e-06 Score=81.60 Aligned_cols=264 Identities=11% Similarity=0.061 Sum_probs=149.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce-
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV- 277 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v- 277 (490)
+..++.++.+|.++.+|..+|+.+.+.........+... .+..++.++.+|.+..+|..++ +.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG---~~~W~~~~~~~~~~ 194 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDG---AVKWTVNLDVPSLT 194 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCC---CEeeeecCCCCccc
Confidence 556777888999999999999988776643321111122 2456777888899999999886 3333332111000
Q ss_pred ----EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCceEEEEcC--CCcEEEEEcCCCcEEEEE
Q 011256 278 ----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIWD 349 (490)
Q Consensus 278 ----~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~g~~dg~i~iwd 349 (490)
..-.. .+..++.++.+|.+..+|..+|+.+.........+.. .....+..+| .+..+++++.+|.+..+|
T Consensus 195 ~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 195 LRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 01111 1345777888999999999999876655322111000 0011111222 244666677889999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCe
Q 011256 350 VKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADI 428 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di 428 (490)
..+|+.+-.... +....+.. .+..++.++.++ +..+|..+++.+....... .....+..+ .+.+|++++.+.
T Consensus 273 ~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 273 LRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred CCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECCEEEEEeCCC
Confidence 999987655432 11122222 355666666676 9999999887654433211 111122222 255677777774
Q ss_pred EEEEEeecCCcceEeeeecCCCCCcceE-EEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 429 RVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.++-++. .+.+.+...... ...+. ...+ .+..|+.++.||.|+.++++
T Consensus 346 ~l~~ld~--~tG~~~~~~~~~--~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~~ 394 (394)
T PRK11138 346 YLHWINR--EDGRFVAQQKVD--SSGFLSEPVV--ADDKLLIQARDGTVYAITRP 394 (394)
T ss_pred EEEEEEC--CCCCEEEEEEcC--CCcceeCCEE--ECCEEEEEeCCceEEEEeCC
Confidence 4444432 233444333221 11122 2222 23478888999999988753
No 314
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1e-08 Score=90.92 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=119.3
Q ss_pred EEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-----eEEEEeecCCCCC
Q 011256 245 LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDG 319 (490)
Q Consensus 245 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~ 319 (490)
++.+.+-.|-+-|++++ ....|. ..+.|.++.|+..++.++.|+.+|.|..+|++.+ .+...+ -
T Consensus 228 fs~G~sqqv~L~nvetg----~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl------y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG----HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL------Y 296 (425)
T ss_pred ecccccceeEEEEeecc----cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE------E
Confidence 55566677888888874 233333 5678999999988999999999999999999865 233333 2
Q ss_pred CCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCce---eeeecCCCCCeEEE--EEcCCCCEEEEEeCCC-EEEEECC
Q 011256 320 RPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAI--SFSENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 320 ~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l--~~s~~~~~l~~~~~d~-i~iwd~~ 392 (490)
|++.|+++..-. ++.+|++.+.+|+|++||++--++ +.++++|...-.-+ -..+....++++++|. .+||.++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 457889988877 788999999999999999987766 88888886533332 3445566788888888 9999999
Q ss_pred CCcceeeeecCCC--CCCeeEEEEc
Q 011256 393 KLKNFRSFESSDS--ETPTNSVDFD 415 (490)
Q Consensus 393 ~~~~~~~~~~~~~--~~~i~~i~~s 415 (490)
.+..+.+++.... ...+.+++|+
T Consensus 377 ~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCceeeccCCCCccccccccceehh
Confidence 9998888776532 2234555554
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.3e-06 Score=84.98 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=89.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE-eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
..|.--+++..+++++.|++-|.+++|+...++.... ..+..+.+..+..+++..++|.|+..|.|.++-+........
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3444445566789999999999999999877655332 233445566677788888999999999999998876432222
Q ss_pred eeee---cccccceEEEEEecCCCEEEEEECCCeEEEEeCCC
Q 011256 267 KHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS 305 (490)
Q Consensus 267 ~~~~---~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~ 305 (490)
...- ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2111 23778999999999999999999999999988877
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=2.4e-05 Score=70.66 Aligned_cols=225 Identities=16% Similarity=0.146 Sum_probs=144.5
Q ss_pred EEEEEEee-CCCEEEEEeCCCc-EEEEeCCCCCccceeeeecccccc--eEEEEEecCCCEEEEEEC-----CCeEEEEe
Q 011256 232 VTSVKFVT-EGDLFLTGSADKT-VRVWQGSEDGNYDCKHTLKDHTAE--VQAVTVHATNKYFVTASL-----DNTWCFYD 302 (490)
Q Consensus 232 v~~l~~~~-~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~~~-----dg~i~iwd 302 (490)
...++.+| .+..++.+-.-|+ ..+||..++. ....+....+. --.-.|+++|++|++.-. .|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~---~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ---LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc---eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34567777 4455666666554 5678887763 22222211111 112568999999998744 48899999
Q ss_pred CC-CCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc------------------CCCcEEEEECCCCceeeeec---
Q 011256 303 LS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT------------------SEALVKIWDVKSQANVAKFD--- 360 (490)
Q Consensus 303 ~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~------------------~dg~i~iwd~~~~~~~~~~~--- 360 (490)
.. +-..+..+...+ -....+.+.|||..|+++. .+..+.+.|..+|+.+.+..
T Consensus 84 ~~~~~~ri~E~~s~G-----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 84 AARGYRRIGEFPSHG-----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred CcCCcEEEeEecCCC-----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 99 556666666443 3445688999997777753 23356677888888777643
Q ss_pred -CCCCCeEEEEEcCCCCEEEEEeCCC--------EEEEECCCCcceeeeecC-----CCCCCeeEEEEcCCCCEEEEEec
Q 011256 361 -GHVGAVTAISFSENGYYLATAAHDG--------VKLWDLRKLKNFRSFESS-----DSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 361 -~~~~~i~~l~~s~~~~~l~~~~~d~--------i~iwd~~~~~~~~~~~~~-----~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
-|.-.|..+++.++|..++..-..+ |-+++. +..+..+... .....+-+|++++++.++++++-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 3677899999999998777654332 444443 3323333322 12467999999999999988887
Q ss_pred C---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 427 D---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 427 d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
. +.+|+. .+...+.... ...+..++-.+++ ++++.+ .|.+
T Consensus 237 rGg~~~~~d~----~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 237 RGGRVAVWDA----ATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred CCCEEEEEEC----CCCCEeeccc----cCceeeeeecCCc-eEEeCC-CccE
Confidence 6 888876 4455554443 2356677777776 666655 4544
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.79 E-value=3.3e-06 Score=87.18 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=132.5
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC----C
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL----S 304 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~----~ 304 (490)
...|.++.|..++..++.+..+|.|.+-|..+. .......-...|.+++|+||+..++..+.++++.+-+- -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL----ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc----ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 357999999999999999999999999988773 33333345678999999999999999998888776432 1
Q ss_pred CCeEE-------------------EEeecCCC-------------CC---CCCCceEEEEcCCCcEEEEE-----cCCCc
Q 011256 305 SGICL-------------------TQVSDAGT-------------DG---RPEGYTSAAFHPDGLILGTG-----TSEAL 344 (490)
Q Consensus 305 ~~~~~-------------------~~~~~~~~-------------~~---~~~~v~~~~~~~~~~~l~~g-----~~dg~ 344 (490)
..+.+ .++..... .+ ..+.=++++|--||.++++. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11111 11110000 00 11223468999999999983 33378
Q ss_pred EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCcceee--eecCCCCCCeeEEEEcCCC
Q 011256 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~--~~~~~~~~~i~~i~~s~~~ 418 (490)
|++||-. |..-..-....+.-.+++|-|.|.++++-..+ + |.+|.-.. -.-.. +..+.....+..++|+.++
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCC
Confidence 9999976 54433333344555789999999999986544 3 88887432 22111 1222224458999999999
Q ss_pred CEEEEE---ecC--eEEEEE
Q 011256 419 SYLAVA---SAD--IRVYQV 433 (490)
Q Consensus 419 ~~l~~~---~~d--i~v~~~ 433 (490)
..|++- ... +++|.+
T Consensus 302 diLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CceeeeecccccceEEEEEe
Confidence 999983 333 888887
No 318
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=2.4e-08 Score=96.91 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=140.9
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCc-EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
+..+|..+|+.+.|+|.. ..+++++.|-.+..||+.+.. .+..+..-...-..++|+.....+.+.+..+.|.+||..
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 456788999999999965 589999999999999987643 344444444456789998754445555667789999998
Q ss_pred CCCccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--cEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--LIL 336 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l 336 (490)
.+. .++..+++|...|+.+.|..- ...+.+++.||+|+.||............. ...++.--.+.|-| .++
T Consensus 189 ~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt----t~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 189 KGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT----TNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred CCC--cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc----ccCcceeccccccCceeEe
Confidence 876 677788889999999998742 357889999999999998765432222111 11445555555533 222
Q ss_pred EEEcCCCcEEE---------EECCC-CceeeeecCCCCCeEEEEEcCC----------CCEEEEEeCCC-EEEEECCC
Q 011256 337 GTGTSEALVKI---------WDVKS-QANVAKFDGHVGAVTAISFSEN----------GYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 337 ~~g~~dg~i~i---------wd~~~-~~~~~~~~~~~~~i~~l~~s~~----------~~~l~~~~~d~-i~iwd~~~ 393 (490)
.-.-.+..+.+ |+..+ .++++.|.||...|....|-.. ...|++-+.|. +++|-+.+
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22111223333 33332 3678999999888766655331 35789999997 99997753
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.79 E-value=9e-06 Score=84.06 Aligned_cols=220 Identities=13% Similarity=0.189 Sum_probs=141.7
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC----CCCc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS----EDGN 263 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~----~~~~ 263 (490)
+.|.++.|..+++-++.+...|.|.+-|..+..... ...-...|.+++|+||+..++..+.++++.+-+-. ....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 689999999999999999999999999887654422 22245679999999999999998888887765320 0000
Q ss_pred ----------------cceeeeeccc---------------------ccceEEEEEecCCCEEEEEE----CC-CeEEEE
Q 011256 264 ----------------YDCKHTLKDH---------------------TAEVQAVTVHATNKYFVTAS----LD-NTWCFY 301 (490)
Q Consensus 264 ----------------~~~~~~~~~h---------------------~~~v~~l~~~~~~~~l~s~~----~d-g~i~iw 301 (490)
.+....+.+. .+.=+.|.|--||.+|++.. .+ +.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0000111110 11123588998999998842 23 789999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE---cCCCcEEEEECCC---CceeeeecCCCCCeEEEEEcCCC
Q 011256 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG---TSEALVKIWDVKS---QANVAKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g---~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~~ 375 (490)
|-+ |..-..-. .....-.+++|-|.|.++++- +.|+.|.+|.-+. |.-...+......+..++|+.++
T Consensus 228 drE-g~Lns~se-----~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 228 DRE-GALNSTSE-----PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred ccc-chhhcccC-----cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 987 33222111 111345789999999999885 3456788887432 22222233334459999999999
Q ss_pred CEEEE---EeCCC-EEEEECCCCccee--eeecCCCCCCeeEEEEcCCC
Q 011256 376 YYLAT---AAHDG-VKLWDLRKLKNFR--SFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 376 ~~l~~---~~~d~-i~iwd~~~~~~~~--~~~~~~~~~~i~~i~~s~~~ 418 (490)
..|++ ..... |++|-+.+..-.. .+... ... -+.|+|..
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--~~~--~~~W~p~~ 346 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--QKA--LLMWDPVT 346 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecc--ccc--cccccCCC
Confidence 99998 44444 9999988765432 22222 111 27788854
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=8.1e-06 Score=79.69 Aligned_cols=267 Identities=14% Similarity=0.079 Sum_probs=148.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc----------CEE-EEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----------KVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~----------~v~-~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
.+..+++++.+|.+.-+|..+|+.+-....... .+. .+.. ++..++.++.+|.+..+|..++. .
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~---~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE---V 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC---C
Confidence 366778888889999999999988776543220 000 1111 45567788889999999988763 3
Q ss_pred eeeecccccceEE-EEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 267 KHTLKDHTAEVQA-VTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 267 ~~~~~~h~~~v~~-l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
+...... +.+.+ ... .+..++.++.+|.+..+|..+|+.+................+-.. .+..++.++.+|.+
T Consensus 143 ~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v 217 (394)
T PRK11138 143 AWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRV 217 (394)
T ss_pred cccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEE
Confidence 3333222 12221 112 245677788899999999999998887753211000000001111 12356677889999
Q ss_pred EEEECCCCceeeeecCCC--C-----CeEEEEEcC--CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 346 KIWDVKSQANVAKFDGHV--G-----AVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~~~--~-----~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
..+|..+|+.+....... + ....+..+| .+..+++++.++ +..+|..+++.+....... ...+..
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~- 292 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFAV- 292 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcEE-
Confidence 999999988765543110 0 011111122 244555666666 9999999988765543321 112222
Q ss_pred CCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 416 HSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 416 ~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.+..+++++.+..++-++.. +...+-...... .....+..+ .+.+|+.++.||.|++.|..+++
T Consensus 293 -~~~~vy~~~~~g~l~ald~~--tG~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 293 -DGGRIYLVDQNDRVYALDTR--GGVELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred -ECCEEEEEcCCCeEEEEECC--CCcEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 35566666666444444321 122211111100 111112222 24567788889998888876654
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=3.2e-08 Score=60.96 Aligned_cols=39 Identities=38% Similarity=0.844 Sum_probs=36.7
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
++++.++.+|.+.|.+++|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 322
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=1e-07 Score=81.52 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=95.2
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcE-EEEeccCccCEEEEEEeeCCCEEEEEeC-----CCcEEEEeCCCCCccceeee
Q 011256 196 HYSKDVIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSA-----DKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 196 ~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~ 269 (490)
+-.++.+++++.||.+.+++...-.. ...+..-...-.+.+....++.+.++.. -+..++|+++..+.+ ...
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~--~~~ 175 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL--IPS 175 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc--ccc
Confidence 34567899999999999998654111 1111111111122333334554544322 234556666543211 111
Q ss_pred ecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEE
Q 011256 270 LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKI 347 (490)
Q Consensus 270 ~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~i 347 (490)
......|.+++-||.. ..+++|+.||.+.+||.+.......+ ...|..++..+-||| ++..|+++++||.+.-
T Consensus 176 -~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 176 -KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred -ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH----HHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 1122349999999865 56777888999999999987544333 345678999999999 6788999999999999
Q ss_pred EECCC
Q 011256 348 WDVKS 352 (490)
Q Consensus 348 wd~~~ 352 (490)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99765
No 323
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=7e-06 Score=74.12 Aligned_cols=192 Identities=13% Similarity=0.154 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee-cccc--
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL-KDHT-- 274 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~h~-- 274 (490)
++..+++++.++.++.||..+|+.+..+.. ...+.... ...+..+++++.++.+..+|..++ +..... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG---~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTG---KVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTS---CEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCc---ceeeeeccccccc
Confidence 567777778999999999999999877764 22221112 225556777778889999998886 344432 2110
Q ss_pred -cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC-----CCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 275 -AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP-----EGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 275 -~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
.....+.....++.++.+..++.|..+|+++|+.+............ ..+..-.+..++ .++.++.+|.+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV 188 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE
Confidence 11222333334888999999999999999999998887653211100 011222233345 66666777754444
Q ss_pred ECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCccee
Q 011256 349 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 398 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 398 (490)
|+.+++.+.... ...+..+ ...++..|++++.++ |.+||+++++...
T Consensus 189 d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 189 DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 999998664333 2333332 345677777777666 9999999987653
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=1.8e-05 Score=68.24 Aligned_cols=263 Identities=14% Similarity=0.143 Sum_probs=135.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
-|++++.|+..|.+++.+.++|.....+..-..-=......+++.++..|+.|++.+..|..+. .++...+...+.-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCcee
Confidence 3678899999999999999999877766533321122234568999999999999999998775 5666655433333
Q ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCCe--EEEEeecCCCCCCCCCceE--EEEcCCCcEEEEEcCCCcEEEEECCCC
Q 011256 278 QAVTVHATNKYFVTASLDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTS--AAFHPDGLILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 278 ~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~g~~dg~i~iwd~~~~ 353 (490)
.+-+..|....|..+...|.+.--..+.+. .+...... .++.+ ++. +..+..++.||.+.-+| ..|
T Consensus 139 ~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~------~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG 208 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF------GPIFASPLCV---GSSVIITTVDGVLTSFD-ESG 208 (354)
T ss_pred ccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcC------CccccCceec---cceEEEEEeccEEEEEc-CCC
Confidence 333445533444455555555544444331 11111110 11111 111 22344455566666555 444
Q ss_pred ceeeeecCCCCCe-----------EEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEc-C---CC
Q 011256 354 ANVAKFDGHVGAV-----------TAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFD-H---SG 418 (490)
Q Consensus 354 ~~~~~~~~~~~~i-----------~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s-~---~~ 418 (490)
+.+..+. ..++| ..+.+..++-+.+..-..+-.+|..+.+.....+-.+. ..+.++ + ..
T Consensus 209 ~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~ 282 (354)
T KOG4649|consen 209 RQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYP 282 (354)
T ss_pred cEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcch
Confidence 4444332 12222 22333323333332222345566666654333322211 112221 1 13
Q ss_pred CEEEEEecCeEEEEEeecCCcceEeeeecCCC-CCcceEEEE-----E-cC---CCCeEEEEeCCCcEEEecCCCC
Q 011256 419 SYLAVASADIRVYQVASVKADWNCIKTFPDLS-GTGKATCVK-----F-GP---DAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 419 ~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-----~-s~---~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
++|..++.|.++|-+...+. +.....+. ..+.+..+. | || +| .|+.|+.|..|+-||+++.
T Consensus 283 ~ll~~~s~dgkv~il~~~~s----l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 283 KLLRRSSGDGKVMILMTSKS----LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hhhhhhcCCCcEEEEEeccc----ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 56677777777777633221 22222110 012233222 2 22 44 4777889999999999763
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=3.1e-07 Score=90.73 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=150.3
Q ss_pred EEEecCCCCEEEEEe----CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 192 SLDIHYSKDVIATGG----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
-..|+|...++++++ ..|+|.||- .+|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+. +..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~h 94 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETH 94 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc---eee
Confidence 356888888888775 467888884 4555433222 1123567999999989999999999999988774 333
Q ss_pred eeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC-CCCCCCCceEEEEcCCCc------EEEEEc
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDGL------ILGTGT 340 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~------~l~~g~ 340 (490)
.....|..+|..+.|+++|..++++..-|.+.+|....-..+....... ..+..-...|..+++++. ..++.+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 3345799999999999999999999999999999876332222111100 001011234445556531 223333
Q ss_pred CCCcEE-EEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 341 SEALVK-IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 341 ~dg~i~-iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
.+..+- .++.+....-.... +. -.|+|..++.++.+| |+-.|- ++++....... +. ..+-|.+..
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~d---S~-vQmLf~~~~ 241 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLD---SE-VQMLFMGYC 241 (1416)
T ss_pred chhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEcc---ch-HHHHHhccc
Confidence 333232 33322111111111 11 145677777777777 655552 33333322221 11 112233322
Q ss_pred CEEEEEecC--eEEEEEee-cC-----------Ccc-e-----------E---eeeecCCCCCcceEEEEEcCCCCeEEE
Q 011256 419 SYLAVASAD--IRVYQVAS-VK-----------ADW-N-----------C---IKTFPDLSGTGKATCVKFGPDAKYIAV 469 (490)
Q Consensus 419 ~~l~~~~~d--i~v~~~~~-~~-----------~~~-~-----------~---~~~~~~~~~~~~v~~~~~s~~~~~l~s 469 (490)
.-+++--.+ ..+|-+.. +. +.+ . . ...+ +......++|++++..+..|+.
T Consensus 242 eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKy-g~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 242 EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKY-GLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcch-hhhcCCceEEEEEeccceEEEe
Confidence 222222222 22221110 00 000 0 0 0001 1112457899999999999999
Q ss_pred EeCCCcEEEecC
Q 011256 470 GSMDRNLRVFGL 481 (490)
Q Consensus 470 ~~~dg~v~iw~~ 481 (490)
|...|.+.+|.-
T Consensus 321 gt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 321 GTKEGNVTIWLD 332 (1416)
T ss_pred cccCCcEEEeee
Confidence 999999999953
No 326
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.67 E-value=1e-05 Score=77.55 Aligned_cols=264 Identities=17% Similarity=0.217 Sum_probs=144.1
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 196 HYSKDVIATG---------GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 196 ~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
|||+++++.. +..+.+.|||+.+++...... ....+....|+|+|+.++... ++.|.+++..++. ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~--~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ--ET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE--EE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCC--eE
Confidence 5677766653 234679999998876544333 366788999999999988876 4789999876642 11
Q ss_pred eeeecc-------c---------ccceEEEEEecCCCEEEEEECC-Ce--------------------------------
Q 011256 267 KHTLKD-------H---------TAEVQAVTVHATNKYFVTASLD-NT-------------------------------- 297 (490)
Q Consensus 267 ~~~~~~-------h---------~~~v~~l~~~~~~~~l~s~~~d-g~-------------------------------- 297 (490)
..+..+ - -+.-..+-|+|++++|+....| ..
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 111112 0 1123568899999988876443 11
Q ss_pred ---EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE--cCC---CcEEEEECCCCceeeeecC-CCCC---
Q 011256 298 ---WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG--TSE---ALVKIWDVKSQANVAKFDG-HVGA--- 365 (490)
Q Consensus 298 ---i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g--~~d---g~i~iwd~~~~~~~~~~~~-~~~~--- 365 (490)
+.++|+.+++....-...........+..+.|.+++..|++. ..+ ..+.++|..++.....+.. ..+.
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 222333333321100000000112456788899988833332 222 2567778877654333321 2222
Q ss_pred eEEEEEc-CCC-CEEEEEeCCC---EEEEECCCCcceeeeecCCCCCCee-EEEEcCCCCEEEE-EecC----eEEEEEe
Q 011256 366 VTAISFS-ENG-YYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSYLAV-ASAD----IRVYQVA 434 (490)
Q Consensus 366 i~~l~~s-~~~-~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~-~i~~s~~~~~l~~-~~~d----i~v~~~~ 434 (490)
-....|. +++ .+|.....+| |.+++...+... .+... ...|. .+.++++++.|+. +..+ -.+|.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 2345554 554 4555555666 788887776533 33222 45564 4778888776654 4432 6788875
Q ss_pred ec-CCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 435 SV-KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 435 ~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.. .....++..... .-..+.|||+|++++..+
T Consensus 314 ~~~~~~~~~LT~~~~-----~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 314 LDSGGEPKCLTCEDG-----DHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTETTEEEESSTTSS-----TTEEEEE-TTSSEEEEEE
T ss_pred eCCCCCeEeccCCCC-----CceEEEECCCCCEEEEEE
Confidence 54 333333332211 116899999999987654
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.66 E-value=2e-05 Score=77.80 Aligned_cols=167 Identities=15% Similarity=0.085 Sum_probs=104.0
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc----------------------------------
Q 011256 295 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---------------------------------- 340 (490)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---------------------------------- 340 (490)
.+.+.+.|.++.+...++... .....++++|+|.++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkd 287 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKA 287 (635)
T ss_pred eEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhC
Confidence 456777888887777666543 2335567777777776664
Q ss_pred ------CCCcEEEEECCC----C-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcc-----------
Q 011256 341 ------SEALVKIWDVKS----Q-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKN----------- 396 (490)
Q Consensus 341 ------~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~----------- 396 (490)
.++.|.++|.++ + +.+..+. -......+.++|||+++++++.-. |.|+|+.+.+.
T Consensus 288 GK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 288 GKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 124577778776 3 3333333 344668899999999999888753 99999988653
Q ss_pred -eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEee------cCCcceEeeeecCCCCCcceEE---EEEcCCC
Q 011256 397 -FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS------VKADWNCIKTFPDLSGTGKATC---VKFGPDA 464 (490)
Q Consensus 397 -~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~------~~~~~~~~~~~~~~~~~~~v~~---~~~s~~~ 464 (490)
...... .......+|+++|....+-.-| +..|++.. +.+.+..+..+..|-..+.+.. =.-.|||
T Consensus 367 vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dg 443 (635)
T PRK02888 367 VVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADG 443 (635)
T ss_pred EEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCC
Confidence 222222 3345678899999866665555 88899854 1222344444444422222211 1235678
Q ss_pred CeEEEEe
Q 011256 465 KYIAVGS 471 (490)
Q Consensus 465 ~~l~s~~ 471 (490)
++|++.+
T Consensus 444 k~l~~~n 450 (635)
T PRK02888 444 KWLVSLN 450 (635)
T ss_pred CEEEEcc
Confidence 8877764
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.64 E-value=8.1e-06 Score=79.31 Aligned_cols=220 Identities=12% Similarity=0.139 Sum_probs=118.6
Q ss_pred CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 011256 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 307 (490)
Q Consensus 228 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 307 (490)
..-....+.++|+|++++++ .||...||..... ... ..+.-....|.+ .+.+++-...++|.++.--+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RNK-----AFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EEE-----EEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---ccc-----ccCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 44457889999999988884 4678888873321 111 123455678887 4557777778889996322222
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVK 387 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~ 387 (490)
....+... ..+..+-. |.+|+..+.+ .|.+||..+++.+..+... +|..+.|+++|.+++..+.+.+.
T Consensus 101 ~~k~i~~~------~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~ 168 (443)
T PF04053_consen 101 VVKSIKLP------FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIY 168 (443)
T ss_dssp TT-----S------S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEE
T ss_pred cceEEcCC------cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEE
Confidence 21122211 12233322 7777776654 8999999999999999743 48999999999999999999977
Q ss_pred EEECCCC-----------cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcce
Q 011256 388 LWDLRKL-----------KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKA 455 (490)
Q Consensus 388 iwd~~~~-----------~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v 455 (490)
|++.... ..+..+... ...|.+.+|..+ .++..+.. ++. +. ......+..+ ..++
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d--~fiYtT~~~lkY--l~--~Ge~~~i~~l-----d~~~ 235 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED--CFIYTTSNHLKY--LV--NGETGIIAHL-----DKPL 235 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT--EEEEE-TTEEEE--EE--TTEEEEEEE------SS--
T ss_pred EEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC--EEEEEcCCeEEE--EE--cCCcceEEEc-----CCce
Confidence 7765433 012222211 457899999876 44444444 444 31 1223334443 3355
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 456 TCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 456 ~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.=+.+.+..+.++....|+.|..+.++
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 666777777788888999999888775
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=2e-07 Score=57.32 Aligned_cols=38 Identities=18% Similarity=0.493 Sum_probs=36.2
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
+++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57788999999999999999999999999999999997
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.58 E-value=1.6e-05 Score=81.45 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=97.4
Q ss_pred CEEEEE-eCCCcEEEEeCCCCCccceeeeecccccc-eEEEEEec-----CCCEEEEEECCCeEEEEeCCCCe--EEEEe
Q 011256 242 DLFLTG-SADKTVRVWQGSEDGNYDCKHTLKDHTAE-VQAVTVHA-----TNKYFVTASLDNTWCFYDLSSGI--CLTQV 312 (490)
Q Consensus 242 ~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~~~-----~~~~l~s~~~dg~i~iwd~~~~~--~~~~~ 312 (490)
++|+.- .....|+-.|++.+ +.+..+..|... |..++-.. ++...+.|-.+..+..||.+-.. .+...
T Consensus 494 ~mil~~~~~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ceEeecCCCCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 344433 34577888899887 777777766643 55554321 13345677788899999988643 22111
Q ss_pred ecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEC
Q 011256 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDL 391 (490)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~ 391 (490)
..........+|++-..+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+|+++.+..-|.+++.
T Consensus 571 --~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 571 --SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred --ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 1111233567888877776 688999999999999433233334556678999999999999999988877777775
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.50 E-value=0.00035 Score=68.02 Aligned_cols=206 Identities=15% Similarity=0.200 Sum_probs=109.3
Q ss_pred cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc---ceeeeecccccceEEEEEecCC
Q 011256 210 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY---DCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
.|.||+. .|+.+.++.-..+.|.++.|+.+. .|++...||.+++||+.....+ ..+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4999987 467777665444889999998754 4666788999999998643100 0111111111222222333344
Q ss_pred CEEEEEECCCeEEEEeCCCCe-EEEEeec-CC--CCCCC-CCce-EEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec
Q 011256 287 KYFVTASLDNTWCFYDLSSGI-CLTQVSD-AG--TDGRP-EGYT-SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 360 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~--~~~~~-~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 360 (490)
++.-..++.+.+..-.... ....+.. .. ...+. .... ...++.+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333344555444322211 1111110 00 00000 0011 123444444444444555566444332211 22
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEE
Q 011256 361 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 424 (490)
..+++..+++||+|++++.-..+| +.+.+..-.+....+.... ......+.|.-+...++.-
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEe
Confidence 246899999999999999999888 8888765555555555542 3566788887665444433
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.49 E-value=0.00023 Score=71.33 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=118.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc------CEE--EEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------KVT--SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
+..+++++.++.++.+|..+|+.+-.+..... .+. .+... ++..++.++.+|.|.-+|..++ +.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG---~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETG---KQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCC---CEeeee
Confidence 55677777889999999999988776653322 110 01111 2267888889999999999886 444333
Q ss_pred cccccc-----eE-EEEEecCCCEEEEEE---------CCCeEEEEeCCCCeEEEEeecCCCCC--C-------------
Q 011256 271 KDHTAE-----VQ-AVTVHATNKYFVTAS---------LDNTWCFYDLSSGICLTQVSDAGTDG--R------------- 320 (490)
Q Consensus 271 ~~h~~~-----v~-~l~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~------------- 320 (490)
...... +. ...+. +..++.++ .+|.+..+|..+|+.+..+....... .
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 321110 11 11122 24444543 36889999999999888775421100 0
Q ss_pred -CCCceEEEEcCCCcEEEEEcCCC------------------cEEEEECCCCceeeeecCCCCCeE------EEEEc---
Q 011256 321 -PEGYTSAAFHPDGLILGTGTSEA------------------LVKIWDVKSQANVAKFDGHVGAVT------AISFS--- 372 (490)
Q Consensus 321 -~~~v~~~~~~~~~~~l~~g~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~------~l~~s--- 372 (490)
...-...++.+.+.++++++.++ .|.-+|..+|+.+-.+........ ...+.
T Consensus 215 g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 215 GGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 00001345555567778887665 799999999998877642111110 00111
Q ss_pred -CCCC---EEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 373 -ENGY---YLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 373 -~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
-+|. .+++++.++ +..+|.++++.+.....
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence 1333 567777777 99999999988776543
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.39 E-value=0.00016 Score=64.50 Aligned_cols=205 Identities=11% Similarity=0.168 Sum_probs=115.5
Q ss_pred ccccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccC-ccCEEEEEEeeCCCEEEEEeCCCcEEEEeC
Q 011256 181 PLHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 258 (490)
++.... ..+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++++--.++.+.++++
T Consensus 16 ~l~g~~-~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGIL-DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT---S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCcc-CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 344443 3599999999755 6667777888888887 57888776533 355788999877777766656899999988
Q ss_pred CCCCccce---eeee-----cccccceEEEEEecCCCEEEEEECCCeEEEEeCCC---CeEEEEeec---CCCCCCCCCc
Q 011256 259 SEDGNYDC---KHTL-----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---GICLTQVSD---AGTDGRPEGY 324 (490)
Q Consensus 259 ~~~~~~~~---~~~~-----~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~---~~~~~~~~~v 324 (490)
........ ...+ ..++..+-.++|.|.++.|+.+-......+|.+.. ......... .........+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 44321111 1111 13456789999999988888887766666666543 221111110 0011122457
Q ss_pred eEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCC---------CCeEEEEEcCCCCEEEEEeCCC-EEEE
Q 011256 325 TSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLW 389 (490)
Q Consensus 325 ~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~~~~~d~-i~iw 389 (490)
.+++++| .+.+++.+..+..|.++| .+|+.+..+.-.. ...-.|+|.++|++.+++ +-+ .++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 8999999 467788888889999999 6777665553211 257899999999766665 444 4444
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.39 E-value=9.7e-06 Score=79.20 Aligned_cols=200 Identities=11% Similarity=0.123 Sum_probs=127.9
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
..|.--++...+++++.|+.-|.+.+|+-..+. .......+..+.+..+..+++..+++.|+..|.|.++-+..+...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 345445566788999999999999999977642 222333334556677778888889999999999999988764322
Q ss_pred EE-eecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC----ceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 310 TQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 310 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
.. +.......|...|++++|++++..+++|...|.|..-.+.+. .....+....+.|..+.+. ++.+|++. --
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt-l~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST-LT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh-hh
Confidence 21 112223347789999999999999999999999999888762 1222333345677777765 33444443 33
Q ss_pred CEEEEECCCCcceeeeecCCCCCC-eeEEEEcC-----CCCEEEEEecCeEEEEEe
Q 011256 385 GVKLWDLRKLKNFRSFESSDSETP-TNSVDFDH-----SGSYLAVASADIRVYQVA 434 (490)
Q Consensus 385 ~i~iwd~~~~~~~~~~~~~~~~~~-i~~i~~s~-----~~~~l~~~~~di~v~~~~ 434 (490)
...+++..... +..+......+. -...+|-| +...|+++--+.|+|..+
T Consensus 190 r~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead 244 (726)
T KOG3621|consen 190 RCILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEAD 244 (726)
T ss_pred hhheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEee
Confidence 34455555433 222222221221 23344444 345666666669999875
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=2.3e-05 Score=75.53 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=81.5
Q ss_pred EEEEEEee-CCCEEEEE----eCCCcE----EEEeCCCCCccceeee-ecccccceEEEEEecCCCEEEEEECCCeEEEE
Q 011256 232 VTSVKFVT-EGDLFLTG----SADKTV----RVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 301 (490)
Q Consensus 232 v~~l~~~~-~~~~l~s~----s~dg~i----~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 301 (490)
..++.|+- +...+.+. +.+|.+ .+|++... +.+.+.. --.....|.|++++|+...++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 46677765 33344443 334433 46776553 2233222 22467789999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC
Q 011256 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 353 (490)
|...+....... .-.++.++|||+|.++++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~~~ka-------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTLLAKA-------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeeeeeee-------cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 998775443321 145789999999999999999999999998644
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.36 E-value=4.1e-07 Score=87.41 Aligned_cols=250 Identities=14% Similarity=0.231 Sum_probs=150.6
Q ss_pred ccCEEEEEEeeCC--CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEE----CCCeEEEE
Q 011256 229 SKKVTSVKFVTEG--DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTAS----LDNTWCFY 301 (490)
Q Consensus 229 ~~~v~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~----~dg~i~iw 301 (490)
...+.|+++.-+. .+++.|..+|.|.+-.+..... .......+|....++++|++-. +.|++|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456777775543 4788999999999988765321 1233445678899999999854 5666652 35679999
Q ss_pred eCCCCeE--EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcC-CCCE
Q 011256 302 DLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSE-NGYY 377 (490)
Q Consensus 302 d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~ 377 (490)
|+.++-. ........ +......+++|..+.+++.+|.....+.++|++.. .....+ ....+..+.+.| .+.+
T Consensus 135 di~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred ecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 9988722 21111111 12345668899989999999999999999999843 222222 233567778888 7888
Q ss_pred EEEEeCCCEEEEE-CCCCcce-eeeecCCC--CCCeeEEEEcCCCC-EEEEEecC---eEEEEEeecCC-----cceE--
Q 011256 378 LATAAHDGVKLWD-LRKLKNF-RSFESSDS--ETPTNSVDFDHSGS-YLAVASAD---IRVYQVASVKA-----DWNC-- 442 (490)
Q Consensus 378 l~~~~~d~i~iwd-~~~~~~~-~~~~~~~~--~~~i~~i~~s~~~~-~l~~~~~d---i~v~~~~~~~~-----~~~~-- 442 (490)
+++..++-|.+|| .++.+.. ..+..... ...+..++|+|... .+++...+ |+.|++..... ....
T Consensus 211 ~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~ 290 (783)
T KOG1008|consen 211 FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVN 290 (783)
T ss_pred eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceee
Confidence 8888744499999 5554332 22221111 23488999999753 34555555 77776643211 1111
Q ss_pred -eeeecCCCC--CcceEEEEEcCCC--CeEEEEeCCCcEEEecCCC
Q 011256 443 -IKTFPDLSG--TGKATCVKFGPDA--KYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 443 -~~~~~~~~~--~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~ 483 (490)
...++.... -..|.+..|++.. ...+++-..-.+.-|++..
T Consensus 291 ~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 291 YESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred ecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 111111111 2467777787644 2344444455555555544
No 337
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.35 E-value=0.0028 Score=62.41 Aligned_cols=243 Identities=14% Similarity=0.172 Sum_probs=130.1
Q ss_pred CeEEEEecCCCCEEEEE-eCCC----cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC-----------c
Q 011256 189 GIVSLDIHYSKDVIATG-GVDT----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK-----------T 252 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg-----------~ 252 (490)
.+..+.++|+|+++|.+ +..| .++++|+.+++.+...-.... ...+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988765 3334 499999999977653211111 23499999988766655433 3
Q ss_pred EEEEeCCCCCccceeeeecccccc--eEEEEEecCCCEEEEEECC----CeEEEEeCCCC----eEEEEeecCCCCCCCC
Q 011256 253 VRVWQGSEDGNYDCKHTLKDHTAE--VQAVTVHATNKYFVTASLD----NTWCFYDLSSG----ICLTQVSDAGTDGRPE 322 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~~~~ 322 (490)
|..|.+.+... .....+...... ...+..++++++++..+.. ..+.+.++..+ .....+... . .
T Consensus 204 v~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~----~ 277 (414)
T PF02897_consen 204 VYRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-E----D 277 (414)
T ss_dssp EEEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-S----S
T ss_pred EEEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-C----C
Confidence 77888776432 212333333322 5678889999987765432 34788888774 222222211 1 2
Q ss_pred CceEEEEcCCCcEEEEEc---CCCcEEEEECCCCce---eeeecCCCC--CeEEEEEcCCCCEEEEEeCCC---EEEEEC
Q 011256 323 GYTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN---VAKFDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDL 391 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~---~~~~~~~~~--~i~~l~~s~~~~~l~~~~~d~---i~iwd~ 391 (490)
.+....-+..+.+++... ..+.|...++..... ...+..+.. .+..+... .+.+++....++ |+++|+
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEEC
Confidence 233322222444444433 345777778876652 224444444 45555543 233444445554 999999
Q ss_pred CCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC----eEEEEEeecCCcc
Q 011256 392 RKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADW 440 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~~~~~~~ 440 (490)
..+.....+.... .+.+..+...+++..+...-+. ..+|.++......
T Consensus 357 ~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 357 DDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp T-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred CCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 9444444444432 3445666655666555443333 6667665544433
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.35 E-value=9.9e-05 Score=73.04 Aligned_cols=181 Identities=13% Similarity=0.094 Sum_probs=110.8
Q ss_pred cCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC----cEEEEeCCCCCccceeeee
Q 011256 196 HYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK----TVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 196 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~ 270 (490)
+|+|+.+. +.-..+.+.+.|..+.+...++.--. ....+.++++|.++++.+.+. ++..-+.... .....+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d~~vvf 276 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---DWVVVF 276 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC---ceEEEE
Confidence 34554332 22334566677777776666655322 346678899999888876422 2322222211 111111
Q ss_pred cccccceEEEEEecCCCEEEEEECCCeEEEEeCCC-----CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCc
Q 011256 271 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEAL 344 (490)
Q Consensus 271 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~ 344 (490)
.- ..+ -.+.++|++... .++.|.++|..+ ...+..+... .....+.++|||+++++++ .+.+
T Consensus 277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG------KsPHGV~vSPDGkylyVanklS~t 344 (635)
T PRK02888 277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP------KNPHGVNTSPDGKYFIANGKLSPT 344 (635)
T ss_pred ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC------CCccceEECCCCCEEEEeCCCCCc
Confidence 10 000 023457776665 367899999998 3455555433 4567899999999877765 4889
Q ss_pred EEEEECCCCce------------eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC
Q 011256 345 VKIWDVKSQAN------------VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 345 i~iwd~~~~~~------------~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 393 (490)
|.|+|+.+.+. +.+..-.. .-...+|.++|+...+..-|. |..||+.+
T Consensus 345 VSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 345 VTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99999987553 33333222 335678999998888888887 99999876
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.33 E-value=0.00011 Score=70.57 Aligned_cols=277 Identities=13% Similarity=0.125 Sum_probs=140.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC---C---C
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE---D---G 262 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---~---~ 262 (490)
.|+++.|.++..-|++|...|.|.||.....+... ..-..+-....+.+- ...++.-.+-|+.. . .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998999999999999999875433222 000011111111110 00111112222221 1 1
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC---CCCCCCCceEEEEcC-----CC-
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---TDGRPEGYTSAAFHP-----DG- 333 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~-----~~- 333 (490)
.+.+...+....++|++++.+ +=.+++.|..+|.+.|.|++....+..-.... .......++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 234455555668899999987 66799999999999999999988887644322 112335677888763 33
Q ss_pred --cEEEEEcCCCcEEEEECC--C-Cc----eeeeecCCCCCeEEEE-EcCC---------------------CCEEEEEe
Q 011256 334 --LILGTGTSEALVKIWDVK--S-QA----NVAKFDGHVGAVTAIS-FSEN---------------------GYYLATAA 382 (490)
Q Consensus 334 --~~l~~g~~dg~i~iwd~~--~-~~----~~~~~~~~~~~i~~l~-~s~~---------------------~~~l~~~~ 382 (490)
-++++|+..|.+.+|.+- . +. .......+.++|..|. |+.+ ..++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 588999999999999874 1 11 1111223556666554 3211 12677777
Q ss_pred CCCEEEEECCCCcceeeeecCCCCCCeeEEEEc-----CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCC--CCCc
Q 011256 383 HDGVKLWDLRKLKNFRSFESSDSETPTNSVDFD-----HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL--SGTG 453 (490)
Q Consensus 383 ~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s-----~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~--~~~~ 453 (490)
...++++...+.+........ ......+.+- ..+..|++-..+ +++|.+ ...+.+...... ....
T Consensus 234 e~~irv~~~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL----P~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL----PSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET----TT--EEEEEE-SS---HH
T ss_pred ccceEEEeCCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEEC----CCchHhhcccCCCccccc
Confidence 777999999887765544421 1223334442 245556666665 888887 334444443331 1123
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 454 KATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 454 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
.+...+++++|..++-.+. ..+.++.+
T Consensus 308 ~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 4456777889997776653 34444433
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.31 E-value=0.00069 Score=62.59 Aligned_cols=227 Identities=16% Similarity=0.191 Sum_probs=129.9
Q ss_pred eCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec----
Q 011256 239 TEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD---- 314 (490)
Q Consensus 239 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---- 314 (490)
..++.|+.|+.+| +.+++..... ...... +...|..+...|+-+.+++-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~--~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS--KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc--cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3577899999998 8999883322 222221 223499999999888777765 49999999876544431100
Q ss_pred -----CCCCCCCCCceEEE--EcCC-CcEEEEEcCCCcEEEEECCCC-----ceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 315 -----AGTDGRPEGYTSAA--FHPD-GLILGTGTSEALVKIWDVKSQ-----ANVAKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 315 -----~~~~~~~~~v~~~~--~~~~-~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
.........+..++ -... +..|+++. ...|.+|..... +....+. -...+.+++|. +..++.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence 00011113344444 1123 34444444 458888877653 3445554 34688999997 6688888
Q ss_pred eCCCEEEEECCCCcceeeeecCCC----------CCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCC
Q 011256 382 AHDGVKLWDLRKLKNFRSFESSDS----------ETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 382 ~~d~i~iwd~~~~~~~~~~~~~~~----------~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
..++..+.|+.++.....+..... ..++..+.. +++.+|++...-..+.+. .+.........+
T Consensus 155 ~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~~~g~fv~~-~G~~~r~~~i~W----- 227 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYDNIGVFVNK-NGEPSRKSTIQW----- 227 (275)
T ss_pred eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEecceEEEEcC-CCCcCcccEEEc-----
Confidence 888899999997665443322211 123333333 345666654322333333 111111111122
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...+.++++ ...||++.+. +.|.||++.+++
T Consensus 228 ~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 228 SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred CCchhEEEE--ECCEEEEECC-CEEEEEECcCCc
Confidence 234556666 3458877765 559999998874
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.29 E-value=2.3e-05 Score=75.58 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=80.3
Q ss_pred EEEEecCC-CCEEEEE----eCCCc----EEEEeCCCCcEE----EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 191 VSLDIHYS-KDVIATG----GVDTN----AVLFDRPSGQIV----TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 191 ~~~~~~~~-~~~l~~~----~~dg~----i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
.++.|+-. ...+.+. +.+|. -++|+...++.. .++ .....|.|++++|+.+.|+.|+.||+|.+||
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 56667653 3334332 23443 345666544331 222 3667899999999999999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 310 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 310 (490)
...+ +..+....-..+.++|||+|..|++|+..|.+.+||+.-.....
T Consensus 288 ~~~~-----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~ 335 (545)
T PF11768_consen 288 TTRG-----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKM 335 (545)
T ss_pred cCCC-----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccce
Confidence 8764 22222344568899999999999999999999999987554433
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.29 E-value=0.0022 Score=59.02 Aligned_cols=261 Identities=12% Similarity=0.131 Sum_probs=150.9
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe----------CCCcEEEEeCCCCCccceeeeecccc----
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKDHT---- 274 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~h~---- 274 (490)
+.++++|..+++.+..+... -.-.+..+|+++.+++++ ..-.|.+||..+......+.....|.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999988877632 233466799999877653 23468999988752211111111111
Q ss_pred cceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC-CcEEEEEcCCCcEEEEECC
Q 011256 275 AEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVK 351 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~ 351 (490)
.....+.++.++++++.... -..|.|.|+..++.+..+... -|.-..|. ..-|.+-|.||.+.-..+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------GC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------GCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------SEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------CEEEEEecCCCceEEEecCCceEEEEEC
Confidence 12234577888988877643 467999999999998888643 23333342 2457777889999888887
Q ss_pred -CCceeeee----cCCCCCe-EEEEEcCCCCEEEEEeCCC-EEEEECCCCcc--eeeeecCC--------CCCCeeEEEE
Q 011256 352 -SQANVAKF----DGHVGAV-TAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSD--------SETPTNSVDF 414 (490)
Q Consensus 352 -~~~~~~~~----~~~~~~i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~--------~~~~i~~i~~ 414 (490)
.|+...+. .....++ ..-.+...+..++--+..| |+-.|+..... ...+.... ..+...-+++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 45544222 2222222 2334444444444345555 88888776542 12222110 0133455778
Q ss_pred cCCCCEEEEEec--------C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC-eEEEE-eCCCcEEEecCC
Q 011256 415 DHSGSYLAVASA--------D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK-YIAVG-SMDRNLRVFGLP 482 (490)
Q Consensus 415 s~~~~~l~~~~~--------d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~v~iw~~~ 482 (490)
++..+.|++--. + -.||.++. .+.+.+..+.. ...+.++..+.|.+ +|++. ..++.|.+||..
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~--~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDL--KTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEET--TTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEEC--CCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 776665555321 1 55666654 44556666553 34677999998776 55544 457899999998
Q ss_pred CCC
Q 011256 483 GND 485 (490)
Q Consensus 483 ~~~ 485 (490)
+++
T Consensus 321 tGk 323 (342)
T PF06433_consen 321 TGK 323 (342)
T ss_dssp T--
T ss_pred CCc
Confidence 764
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.29 E-value=2.7e-07 Score=88.58 Aligned_cols=198 Identities=13% Similarity=0.214 Sum_probs=132.2
Q ss_pred CCeEEEEecCCC--CEEEEEeCCCcEEEEeCCCCcE--EEEeccCccCEEEEEEee-CCCEEEEEe----CCCcEEEEeC
Q 011256 188 PGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGS----ADKTVRVWQG 258 (490)
Q Consensus 188 ~~I~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~s----~dg~i~iwd~ 258 (490)
..+.|+++..+. .++++|..+|.|.+-......- .....+|....++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 467788876644 4888999999999987654322 234457888899999988 556777763 3567999999
Q ss_pred CCCC-ccceeeeecc-cccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecCCCCCCCCCceEEEEcC-CCc
Q 011256 259 SEDG-NYDCKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGL 334 (490)
Q Consensus 259 ~~~~-~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~ 334 (490)
.+.- .......+.+ ......+++|..+.+.+++|.....+.++|++.... ...+. ...+..+.+.| .++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn-------Tk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN-------TKYVQGITVDPFSPN 209 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh-------hhhcccceecCCCCC
Confidence 8741 1111122222 334566888888888999999999999999984322 11111 13466778888 677
Q ss_pred EEEEEcCCCcEEEEE-CCCC-ceeeeecCC----CCCeEEEEEcCC-CCEEEEEeCCC--EEEEECCC
Q 011256 335 ILGTGTSEALVKIWD-VKSQ-ANVAKFDGH----VGAVTAISFSEN-GYYLATAAHDG--VKLWDLRK 393 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd-~~~~-~~~~~~~~~----~~~i~~l~~s~~-~~~l~~~~~d~--i~iwd~~~ 393 (490)
++++-. ||.|.+|| .++- .++..+... ...+..++|+|. ...+++...+. |++||+..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 776654 99999999 3332 233333222 234899999996 34566677664 99999864
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.00024 Score=69.23 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred cccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCC
Q 011256 273 HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS 352 (490)
Q Consensus 273 h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 352 (490)
.......+.++|+|+++++ +.||...++.......... +....++|.+.+. +|+-...+.|.|+.--+
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----------GSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----------EE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----------CceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 4445788999999999888 5668888888544443322 2346688888554 66666688899974333
Q ss_pred CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEE
Q 011256 353 QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVY 431 (490)
Q Consensus 353 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~ 431 (490)
.+....+.. ...+..|-. |.+|+..+.+.|.+||..+++.+..+... +|..+.|+++|.+++..+.+ +.|+
T Consensus 99 ~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~~i~il 170 (443)
T PF04053_consen 99 NEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTKDSIYIL 170 (443)
T ss_dssp E-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred cccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeCCeEEEE
Confidence 333233432 223455543 88888888778999999999999988753 48999999999999999888 8888
Q ss_pred EEee
Q 011256 432 QVAS 435 (490)
Q Consensus 432 ~~~~ 435 (490)
+.+.
T Consensus 171 ~~~~ 174 (443)
T PF04053_consen 171 KYNL 174 (443)
T ss_dssp EE-H
T ss_pred Eecc
Confidence 8743
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.27 E-value=0.0013 Score=58.76 Aligned_cols=199 Identities=12% Similarity=0.190 Sum_probs=108.4
Q ss_pred EeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccceeeeeccc-ccceEEEEEecCCCEEEEEECCCeEEEE
Q 011256 224 TLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TAEVQAVTVHATNKYFVTASLDNTWCFY 301 (490)
Q Consensus 224 ~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~dg~i~iw 301 (490)
.+.+-...+..+.|.|+.+ ++++....+.|..++.+. +.+..+.-. .+..-.|++..++.++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 4556666799999999755 666666778887777643 344444322 3567888888777666666668999999
Q ss_pred eCCCCe------EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCC---Cceeeee--------cCCCC
Q 011256 302 DLSSGI------CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS---QANVAKF--------DGHVG 364 (490)
Q Consensus 302 d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~--------~~~~~ 364 (490)
++.... ....+.......+..++-.++|++.++.|+++-...-..+|.++. ...+... .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884321 122233222223456789999999887777777776666776653 2211111 12334
Q ss_pred CeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcceeeeecCCC-------CCCeeEEEEcCCCCEEEEEecC
Q 011256 365 AVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 365 ~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~d 427 (490)
.+.+++++|....|..-|. .. |..+| .+++....+..... -...-.|+|+++|.+.+++--+
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 6789999997544444444 44 88888 66666655554321 1357789999999777766544
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.26 E-value=0.0028 Score=63.56 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=127.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccCccC-----EE-EEEEeeCCCEEEEEe---------CCCcEEEEeCCCCCcc
Q 011256 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VT-SVKFVTEGDLFLTGS---------ADKTVRVWQGSEDGNY 264 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~-~l~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~ 264 (490)
..++.++.+|.|+.+|..+|+.+-.+...... +. +..+ .+..++.++ .+|.+..+|..++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~-- 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGK-- 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCc--
Confidence 67778888999999999999998776643221 11 1122 234455554 36788888888763
Q ss_pred ceeeeeccc-c-------------------cce-EEEEEecCCCEEEEEECCC------------------eEEEEeCCC
Q 011256 265 DCKHTLKDH-T-------------------AEV-QAVTVHATNKYFVTASLDN------------------TWCFYDLSS 305 (490)
Q Consensus 265 ~~~~~~~~h-~-------------------~~v-~~l~~~~~~~~l~s~~~dg------------------~i~iwd~~~ 305 (490)
.+..+... . ..| ...++.+.+..++.++.++ .|.-+|..+
T Consensus 187 -~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 -LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred -eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 33332211 0 011 1234455567777777665 799999999
Q ss_pred CeEEEEeecCCCCCC----CCCceEEEEc-CCCc---EEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCE
Q 011256 306 GICLTQVSDAGTDGR----PEGYTSAAFH-PDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 377 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~----~~~v~~~~~~-~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 377 (490)
|+....+........ .......... -++. .+++++.+|.+..+|.++|+.+-..... ...+..+| + .
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~ 340 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-L 340 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-e
Confidence 999887753211100 0000111111 1333 6888899999999999999988765421 11233333 2 2
Q ss_pred EEEE------------------eCCC-EEEEECCCCcceeeeecCCCC------CCe--eEEEEcCCCCEEEEEecCeEE
Q 011256 378 LATA------------------AHDG-VKLWDLRKLKNFRSFESSDSE------TPT--NSVDFDHSGSYLAVASADIRV 430 (490)
Q Consensus 378 l~~~------------------~~d~-i~iwd~~~~~~~~~~~~~~~~------~~i--~~i~~s~~~~~l~~~~~di~v 430 (490)
++.+ ..++ +.-.|+.+++.+......... .+. ..+. -.+.++++++.+..+
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l 418 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYF 418 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeE
Confidence 2221 1234 888888888876666543110 111 1122 246778888877555
Q ss_pred EEEe
Q 011256 431 YQVA 434 (490)
Q Consensus 431 ~~~~ 434 (490)
|-++
T Consensus 419 ~ald 422 (488)
T cd00216 419 RAFD 422 (488)
T ss_pred EEEE
Confidence 5444
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.9e-05 Score=77.30 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=97.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|.-+.|+++|..|+++..-|.|.+|....-+.+....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 35679999998899999999999999998877777777899999999999999999999999999999887433322222
Q ss_pred eecccc--cc--eEEEEEecCCC------EEEEEECCCeEE-EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 269 TLKDHT--AE--VQAVTVHATNK------YFVTASLDNTWC-FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 269 ~~~~h~--~~--v~~l~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.+. |. .. ..|...++++. ..++.+.+..+- .++.+......... -.-.|+|..|+
T Consensus 141 ~~~-hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-------------ksgv~~g~~F~ 206 (1416)
T KOG3617|consen 141 IMQ-HELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-------------KSGVPKGTEFL 206 (1416)
T ss_pred hhh-hHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-------------ccCCCCCcEEE
Confidence 222 22 22 33444455532 122333332222 22222111000000 01246788888
Q ss_pred EEcCCCcEEEEEC
Q 011256 338 TGTSEALVKIWDV 350 (490)
Q Consensus 338 ~g~~dg~i~iwd~ 350 (490)
.++.+|+|+-.|-
T Consensus 207 ~~~~~GtVyyvdq 219 (1416)
T KOG3617|consen 207 FAGKSGTVYYVDQ 219 (1416)
T ss_pred EEcCCceEEEEcC
Confidence 9999999988884
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0018 Score=62.62 Aligned_cols=221 Identities=15% Similarity=0.123 Sum_probs=147.6
Q ss_pred EEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCccce
Q 011256 191 VSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 191 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~ 266 (490)
..+++++.+. ..++...++.|.+.|..+........-.. ....+++++++..+..+.. ++++.+.|..+. ..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eE
Confidence 4677788777 55555567899999987777766654322 5678999999987666655 678888887765 34
Q ss_pred eeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC---
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--- 342 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--- 342 (490)
......-..+ ..+++.|+|..++.+. .++.|.++|........ -..............+.+.|+|..+.+....
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 4443322234 8899999999766665 78999999977665553 1111011112445678999999866665443
Q ss_pred CcEEEEECCCCceeeeecCCCC-CeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCC-CCCeeEEEEcCC
Q 011256 343 ALVKIWDVKSQANVAKFDGHVG-AVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDS-ETPTNSVDFDHS 417 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~-~~~i~~i~~s~~ 417 (490)
+.+...|..++.....-..-.. ....+.++|+|.++.+.... + +.+.|.........+..... ...+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 5899999988877665221111 46678999999998888665 3 99999988777666554322 223445555443
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.20 E-value=0.0043 Score=57.26 Aligned_cols=228 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeee-------
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT------- 269 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------- 269 (490)
..++.|+.|..+| +++++.........+. +...|..+...++-+.|++-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578999999888 9999983332222222 223399999999888766655 49999999876422111000
Q ss_pred ----ecccccceEEEE--EecCCCEEEEEECCCeEEEEeCCCC-----eEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 270 ----LKDHTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSG-----ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 270 ----~~~h~~~v~~l~--~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
.......+...+ -...+...+++....+|.+|..... .....+... ..+.+++|. ++.+++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp------~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP------DPPSSIAFL--GNKICV 153 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC------CCcEEEEEe--CCEEEE
Confidence 011223344444 1223444444555568888877653 344444432 678899998 557777
Q ss_pred EcCCCcEEEEECCCCceeeeecCC------------CCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCccee--eeecCC
Q 011256 339 GTSEALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFESSD 404 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~--~~~~~~ 404 (490)
|..++ ..+.|+.++.....+... ..++..+... ++.+|++. ++.-.+.|. .++..+ .+.-
T Consensus 154 ~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W-- 227 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY-DNIGVFVNK-NGEPSRKSTIQW-- 227 (275)
T ss_pred EeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe-cceEEEEcC-CCCcCcccEEEc--
Confidence 76554 788899876554333211 1234444443 45555543 222222333 333322 2222
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecC
Q 011256 405 SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~ 448 (490)
...+.++.+ ...||++.+.+ +.||++ .+...+..+..
T Consensus 228 -~~~p~~~~~--~~pyli~~~~~~iEV~~~----~~~~lvQ~i~~ 265 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSSNSIEVRSL----ETGELVQTIPL 265 (275)
T ss_pred -CCchhEEEE--ECCEEEEECCCEEEEEEC----cCCcEEEEEEC
Confidence 334566666 35688877777 999998 45556665543
No 350
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.0066 Score=57.01 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=127.2
Q ss_pred EecCCCCEEEEEe-CCC--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee
Q 011256 194 DIHYSKDVIATGG-VDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 194 ~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
+|.++|+.|+.++ .|| .+++.|+.+++..+--.+-........++++.+.++-......|+-.|+.+.+ ....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e---~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE---ERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-----EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc---EEEEE
Confidence 4677887555544 354 56667888887665444322223345667888877666666788888888853 22233
Q ss_pred cccccceEEEEEe--cCCCEEEEEE---C-------------------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceE
Q 011256 271 KDHTAEVQAVTVH--ATNKYFVTAS---L-------------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 271 ~~h~~~v~~l~~~--~~~~~l~s~~---~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
......+-...|. .++..++-.- . ...|.-.|+.+|+....+... ..+..
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~------~wlgH 192 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT------DWLGH 192 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES------S-EEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC------ccccC
Confidence 3333444334453 3444443221 1 134666788888776666543 66788
Q ss_pred EEEcCC-CcEEEEEcCC---C-cEEEEECCC-CceeeeecCC--CCCeEEEEEcCCCCEEEEEeC--CC----EEEEECC
Q 011256 327 AAFHPD-GLILGTGTSE---A-LVKIWDVKS-QANVAKFDGH--VGAVTAISFSENGYYLATAAH--DG----VKLWDLR 392 (490)
Q Consensus 327 ~~~~~~-~~~l~~g~~d---g-~i~iwd~~~-~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~--d~----i~iwd~~ 392 (490)
+.|+|. ..+|+.|.+. . .-+||-+++ +.....+..+ ...+..=-|.|||..|.--+. ++ |.-+|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 999994 4555554431 1 125565443 3333333222 223445568999887665322 22 6777888
Q ss_pred CCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--e--------------EEEEEeecCCcceEeeee-------cCC
Q 011256 393 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I--------------RVYQVASVKADWNCIKTF-------PDL 449 (490)
Q Consensus 393 ~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i--------------~v~~~~~~~~~~~~~~~~-------~~~ 449 (490)
+++....... .....+..+++|.+++--+.+ + -||-++........+... ..+
T Consensus 273 t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 273 TGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred CCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 7765433322 234566667899988765544 2 222222211111111111 111
Q ss_pred CCCcceEEEEEcCCCCeEE-EEeCCCcEEEecCC
Q 011256 450 SGTGKATCVKFGPDAKYIA-VGSMDRNLRVFGLP 482 (490)
Q Consensus 450 ~~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw~~~ 482 (490)
. ...=....|+|||++++ +++..|...||-++
T Consensus 349 ~-q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 349 R-QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp S-STT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred C-ccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 0 00124688999999855 55667877777543
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.00041 Score=65.67 Aligned_cols=177 Identities=20% Similarity=0.170 Sum_probs=107.9
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE---EcCC----CcEEEEEcC---------C-CcEEEEECCCC----c
Q 011256 296 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA---FHPD----GLILGTGTS---------E-ALVKIWDVKSQ----A 354 (490)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~----~~~l~~g~~---------d-g~i~iwd~~~~----~ 354 (490)
..|++.|..+.+.+..+..... ..+.+++ +..+ ..+|++|+. . |.|.+|++... .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~----E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~ 77 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN----EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNF 77 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT----EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCC----ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccce
Confidence 3577777777776665553321 3344433 3332 467777753 2 88999999884 1
Q ss_pred eeeee--cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEE
Q 011256 355 NVAKF--DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRV 430 (490)
Q Consensus 355 ~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v 430 (490)
.+..+ ....++|++++-- +| .|+++....|.+|++...+.+...........+.++... ++++++|... +.+
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 22211 2246889998876 44 477777667999999887722222222223355555544 6688888765 888
Q ss_pred EEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 431 YQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+.++........+..-. ....++++.|-++++.++.++.+|.|.++..+.
T Consensus 154 ~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 87755333233333221 255688999986667999999999999999874
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.0053 Score=53.38 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=78.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceE
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 278 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 278 (490)
..+++.|+-.+.+.-.|..+|+.+..-. -...|-+-+.- -|++++.|+..|.+.+.+..++.. ...+... +.|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~---~w~f~~~-~~vk 96 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ---IWNFVIL-ETVK 96 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---eeeeeeh-hhhc
Confidence 4578888889999999999998765432 22233333222 577899999999999999998743 2332211 1222
Q ss_pred -EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 011256 279 -AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 315 (490)
Q Consensus 279 -~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 315 (490)
.....+++..+..|+.|++.+..|..+..++...+..
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccC
Confidence 2234678999999999999999999999988876543
No 353
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=98.10 E-value=0.0081 Score=55.31 Aligned_cols=277 Identities=10% Similarity=0.107 Sum_probs=130.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--cC---ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--GH---SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h---~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+.+|.|.....-+++| ..+.|. -...-|+.-.... .. .-...+|.|.. ...+++| ..| +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCc-eEEEecCCC
Confidence 4488999999555555555 455442 2222232221111 11 12356777753 3344444 445 444445555
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
..+..+..-..-.+....+....++. ...++..|.|..= .+.|..-..+... ....+..+..++||.+++++..
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T-~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRT-TDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEE-SSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEe-CCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECc
Confidence 55544432111223334444444443 3334455554332 2233332332211 1266888889999999999877
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEEC-CCCcceee--eecCCCCCCeeEEEEcCC
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDL-RKLKNFRS--FESSDSETPTNSVDFDHS 417 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~-~~~~~~~~--~~~~~~~~~i~~i~~s~~ 417 (490)
.....-||.-...-...-......|..+.|.|++.+.+++ .++ |++=+. ........ .........+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 6666778764322222222245789999999998776655 555 766662 22211111 111122445889999999
Q ss_pred CCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 418 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 418 ~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
+...++|+.. .++.-....++|+........ ...+..+.|.++.+-++.| .+|.|.-|
T Consensus 244 ~~~wa~gg~G-~l~~S~DgGktW~~~~~~~~~--~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGGSG-TLLVSTDGGKTWQKDRVGENV--PSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp S-EEEEESTT--EEEESSTTSS-EE-GGGTTS--SS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCEEEEeCCc-cEEEeCCCCccceECccccCC--CCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 8888877776 444444455677776554443 5568888887665555554 68987655
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.015 Score=58.60 Aligned_cols=193 Identities=13% Similarity=0.148 Sum_probs=115.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCc-cCEE---E-------EEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVT---S-------VKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~---~-------l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
+..+++++.++.|+-+|..+|+.+-.+.... ..+. + +.+ .+..++.++.|+.+.-.|..++ +.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TG---k~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTG---KVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCC---CEE
Confidence 5677777888899999999999887765321 1111 1 122 2456777888999999998886 333
Q ss_pred eeec--ccc--cceEEEEEecCCCEEEEEE------CCCeEEEEeCCCCeEEEEeecCCCCC------------------
Q 011256 268 HTLK--DHT--AEVQAVTVHATNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTDG------------------ 319 (490)
Q Consensus 268 ~~~~--~h~--~~v~~l~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~------------------ 319 (490)
.... .+. ..+.+--.--++ .++++. .+|.|..+|.++|+.+..+.......
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 3222 111 111111011133 445543 26899999999999887765431110
Q ss_pred ---------CCCCceEEEEcCCCcEEEEEcCC-----C-----------cEEEEECCCCceeeeecCCCC---------C
Q 011256 320 ---------RPEGYTSAAFHPDGLILGTGTSE-----A-----------LVKIWDVKSQANVAKFDGHVG---------A 365 (490)
Q Consensus 320 ---------~~~~v~~~~~~~~~~~l~~g~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~---------~ 365 (490)
....-..+++.+...+++.+..+ + .|.-.|+++|+..-.++.... .
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 00111244677766777766522 2 577778999988776653211 1
Q ss_pred eEEEEEcCCCC---EEEEEeCCC-EEEEECCCCcce
Q 011256 366 VTAISFSENGY---YLATAAHDG-VKLWDLRKLKNF 397 (490)
Q Consensus 366 i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~ 397 (490)
..-+.+..+|+ .++.+..+| +.+.|-++++.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 12223334665 777888888 999999988875
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.003 Score=60.60 Aligned_cols=234 Identities=18% Similarity=0.197 Sum_probs=127.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-EeccC----------------ccCEEEEEEeeCCCEEEEEeC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGH----------------SKKVTSVKFVTEGDLFLTGSA 249 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h----------------~~~v~~l~~~~~~~~l~s~s~ 249 (490)
...+....|+|+|+.++... ++.|++++..++...+ +..|- -+.-..+-|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45678899999999998875 5789999987774433 22220 112356889999998887643
Q ss_pred C-CcE-----------------------------------EEEeCCCCCccceeeee---cccccceEEEEEecCCCEEE
Q 011256 250 D-KTV-----------------------------------RVWQGSEDGNYDCKHTL---KDHTAEVQAVTVHATNKYFV 290 (490)
Q Consensus 250 d-g~i-----------------------------------~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~ 290 (490)
| ..| .|+|+.++... .+... ..-...+..+.|.+++..|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEE
Confidence 2 222 22333332110 11111 12234578888999888444
Q ss_pred EE--ECCC---eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc-CCC-cEEEEEcCCCc--EEEEECCCCceeeeecC
Q 011256 291 TA--SLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH-PDG-LILGTGTSEAL--VKIWDVKSQANVAKFDG 361 (490)
Q Consensus 291 s~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~l~~g~~dg~--i~iwd~~~~~~~~~~~~ 361 (490)
.. ..+. .+.++|..++.+....... ..+--.......+. +++ .++.....+|. |.+++...+. ...+..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~ 277 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS 277 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc
Confidence 33 3332 4667788776554333221 11222333455554 544 55555567774 5556665555 335554
Q ss_pred CCCCeEE-EEEcCCCCEEE-EEeCC--C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEec
Q 011256 362 HVGAVTA-ISFSENGYYLA-TAAHD--G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 362 ~~~~i~~-l~~s~~~~~l~-~~~~d--~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
..-.|+. +.+++++..|. ++..+ . |...++..+.....+.... .....+.|||+|++++....
T Consensus 278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~--~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED--GDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS--STTEEEEE-TTSSEEEEEEE
T ss_pred CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC--CCceEEEECCCCCEEEEEEc
Confidence 5556755 67788766554 44442 1 5555666233344444432 11159999999999887654
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.014 Score=56.57 Aligned_cols=258 Identities=17% Similarity=0.178 Sum_probs=157.8
Q ss_pred EEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC-E
Q 011256 211 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-Y 288 (490)
Q Consensus 211 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~ 288 (490)
+.+++..+......+..+. ....+...+++..+.... ....+.+.+.. .. ........-...-..+++++.+. .
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeE
Confidence 5556655555544444333 455677777775433332 22244444433 11 11111111113345677888887 4
Q ss_pred EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC---CCcEEEEECCCCceeeeecCCCCC
Q 011256 289 FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQANVAKFDGHVGA 365 (490)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~ 365 (490)
++....++.|.+.|..+.......... .....+++++++..+.++.. ++.+.+.|..+++.+........+
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P 162 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVG------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP 162 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeec------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence 455555689999998887777766543 25678999999977777655 689999999998888775443344
Q ss_pred eEEEEEcCCCCEEEEEeCC-C-EEEEECCCCccee-eee-cCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCC
Q 011256 366 VTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFR-SFE-SSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKA 438 (490)
Q Consensus 366 i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~-~~~-~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~ 438 (490)
..++++|+|..+++...+ + |.++|........ ... ..........+.++++|.++.+.... ..+..++...
T Consensus 163 -~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~- 240 (381)
T COG3391 163 -TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT- 240 (381)
T ss_pred -ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-
Confidence 899999999987777744 4 9999977665543 100 01113445778999999977776544 3555553322
Q ss_pred cceEeee-ecCCCCCcceEEEEEcCCCCeEEEEeC-CCcEEEecCCC
Q 011256 439 DWNCIKT-FPDLSGTGKATCVKFGPDAKYIAVGSM-DRNLRVFGLPG 483 (490)
Q Consensus 439 ~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~ 483 (490)
...... .... .. ....+.++|+|.++.+... .+.|.+-|...
T Consensus 241 -~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 241 -GNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred -ceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 222221 1111 12 4567889999999888744 36777776654
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.0003 Score=68.35 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=95.2
Q ss_pred cccceEEEEEecCCCEEEEEE---CC-CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE-EcCCC--cE
Q 011256 273 HTAEVQAVTVHATNKYFVTAS---LD-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-GTSEA--LV 345 (490)
Q Consensus 273 h~~~v~~l~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg--~i 345 (490)
-...+..-.|+|++..++..+ .. ..+.++|++++......... ..-..-.|+|||+.|+. ...|| .|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~------g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN------GNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC------CccCCccCCCCCCEEEEEECCCCCccE
Confidence 344566778888887655442 22 46999999998876666532 22345689999976665 44555 46
Q ss_pred EEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 346 KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
+++|+..+.. ..+....+.-+.-.|+|||++++-.++. | |.++|+...... .+.... ..-..-.|+|+|++|
T Consensus 265 y~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~--~~~~~p~~SpdG~~i 340 (425)
T COG0823 265 YLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG--GGNSNPVWSPDGDKI 340 (425)
T ss_pred EEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC--CCCcCccCCCCCCEE
Confidence 7778877663 3354444444467899999999888776 3 888887766542 332221 122267899999999
Q ss_pred EEEec
Q 011256 422 AVASA 426 (490)
Q Consensus 422 ~~~~~ 426 (490)
+..+.
T Consensus 341 ~~~~~ 345 (425)
T COG0823 341 VFESS 345 (425)
T ss_pred EEEec
Confidence 98874
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00095 Score=64.88 Aligned_cols=202 Identities=14% Similarity=0.142 Sum_probs=121.5
Q ss_pred EEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe---CC-CcEEEEeCCCCCccceeeeecccccceEEEEEecCC
Q 011256 211 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS---AD-KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 211 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s---~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
+.+-|.. +.....+..-...+..-+|+|++..++..+ .. ..+.++++..+.. ..+..+.++ -..-.|+|+|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~---~~~P~fspDG 249 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGN---NGAPAFSPDG 249 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCc---cCCccCCCCC
Confidence 3333433 444455554556677788999988654432 22 3588899988643 233333333 3456899999
Q ss_pred CEEEEE-ECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--cEEEEECCCCceeeeec
Q 011256 287 KYFVTA-SLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA--LVKIWDVKSQANVAKFD 360 (490)
Q Consensus 287 ~~l~s~-~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~ 360 (490)
+.++.+ ..||. |.++|+..+.... +... . ..-..=.|+|||+.++..+. .| .|.++|...+.. ..+.
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~--~---gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT 322 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG--F---GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT 322 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee-cccC--C---ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee
Confidence 866654 45665 6667887776333 2211 1 11225578999987776554 34 466667665544 3333
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 361 GHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
...+.-..-.|+|||.+++..+.. | |.+.|+.++...+.+.. ......-.|.++|..+...+..
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccC
Confidence 333333377899999999887743 2 77777776654333332 3344556778888887766554
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.00 E-value=0.012 Score=54.16 Aligned_cols=245 Identities=16% Similarity=0.157 Sum_probs=139.9
Q ss_pred EEEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccCcc-------CEEEEEEeeCCCEEEEE--eCCC
Q 011256 191 VSLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHSK-------KVTSVKFVTEGDLFLTG--SADK 251 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~l~s~--s~dg 251 (490)
-.+.++|+++.+++++ ....|.+||..+-.....+.-... ....+.++.||++++.. +--.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3466889999887643 344699999998877665432221 11234667777765554 3345
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCceEEEE
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAF 329 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (490)
.|.|-|+... +.+..+.-. . |....|. +.-|.+.|.||.+.-..+. .|+................+..-.+
T Consensus 119 SVtVVDl~~~---kvv~ei~~P--G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~ 191 (342)
T PF06433_consen 119 SVTVVDLAAK---KVVGEIDTP--G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY 191 (342)
T ss_dssp EEEEEETTTT---EEEEEEEGT--S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE
T ss_pred eEEEEECCCC---ceeeeecCC--C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce
Confidence 6778887775 444433311 1 1222232 3568899999999999887 4554433222111111122233344
Q ss_pred cCCCcEEEEEcCCCcEEEEECCCCcee--eeecC----------CCCCeEEEEEcCCCCEEEEEe--------CC-C--E
Q 011256 330 HPDGLILGTGTSEALVKIWDVKSQANV--AKFDG----------HVGAVTAISFSENGYYLATAA--------HD-G--V 386 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~----------~~~~i~~l~~s~~~~~l~~~~--------~d-~--i 386 (490)
...+..++--+.+|.|+-.|+...... ..+.. -.+...-+++++....|++.- .+ + |
T Consensus 192 ~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 192 SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence 445555555678899999998765422 12210 123445577877655554421 12 2 8
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCC-EEEEEec-C--eEEEEEeecCCcceEeeeecCC
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDL 449 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~ 449 (490)
.+||+.+.+.+..+.. ..++.+|.++.+.+ +|++.+. + +.|||. .+.+.+......
T Consensus 272 Wv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~----~tGk~~~~~~~l 331 (342)
T PF06433_consen 272 WVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA----ATGKLVRSIEQL 331 (342)
T ss_dssp EEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEET----TT--EEEEE---
T ss_pred EEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeC----cCCcEEeehhcc
Confidence 8999999999999987 45688999998876 5544433 3 888887 556666665543
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.007 Score=56.09 Aligned_cols=221 Identities=13% Similarity=0.129 Sum_probs=126.2
Q ss_pred EEeeCCC-EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 011256 236 KFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 314 (490)
Q Consensus 236 ~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 314 (490)
.|.++.. ++.+--..+.|.-|+..++. ...+. +.+.+.++.....+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~----~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK----KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc----eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 4555555 44444456777777776532 22222 2233444444444555555433 355666666655333332
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEEcC-----------CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 011256 315 AGTDGRPEGYTSAAFHPDGLILGTGTS-----------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 383 (490)
..........+.+.+.|+|.+-+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|..+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 222223356678899999987665433 134555554 45666666655566789999999998888877
Q ss_pred CC--EEEEECCC--Cc---ceeeeecCCCCCCeeEEEEcCCCCEEEEEec---CeEEEEEeecCCcceEeeeecCCCCCc
Q 011256 384 DG--VKLWDLRK--LK---NFRSFESSDSETPTNSVDFDHSGSYLAVASA---DIRVYQVASVKADWNCIKTFPDLSGTG 453 (490)
Q Consensus 384 d~--i~iwd~~~--~~---~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~---di~v~~~~~~~~~~~~~~~~~~~~~~~ 453 (490)
.. |.-|++.. +. ....+......+..-.++.+.+|.+.+++.. .+.+|+. .+..+..+... ..
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p-----dG~l~~~i~lP--~~ 255 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP-----DGKLLGEIKLP--VK 255 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC-----CCcEEEEEECC--CC
Confidence 63 77776652 11 1111112122456677888889988865544 3777764 35566555543 35
Q ss_pred ceEEEEEc-CCCCeEEEEe
Q 011256 454 KATCVKFG-PDAKYIAVGS 471 (490)
Q Consensus 454 ~v~~~~~s-~~~~~l~s~~ 471 (490)
.+++++|- ++.+.|++.+
T Consensus 256 ~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCccceEeCCCcCEEEEEe
Confidence 67888885 4555555443
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.94 E-value=0.0057 Score=57.89 Aligned_cols=174 Identities=20% Similarity=0.196 Sum_probs=105.4
Q ss_pred CcEEEEeCCCCcEEEEecc-CccCEEEEEEee---C----CCEEEEEeC----------CCcEEEEeCCCC----Cccce
Q 011256 209 TNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVT---E----GDLFLTGSA----------DKTVRVWQGSED----GNYDC 266 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~---~----~~~l~s~s~----------dg~i~iwd~~~~----~~~~~ 266 (490)
+.|++.|..+.+.+.++.- ....+.+++... + ..+|++|+. .|.|.++++... ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888777665542 233455554432 2 457777753 288999999873 12233
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
+... ...++|++++-. +.+++++. ++.|.+|++.... ....-... ....+.++... ++++++|+....+
T Consensus 82 i~~~-~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----~~~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYD----SPFYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEE-EESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEE-eecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheec----ceEEEEEEecc--ccEEEEEEcccCE
Confidence 3332 357889999877 44444443 4799999998887 44333321 11345555544 5699999888888
Q ss_pred EEEECCC-Cceeeee--cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC
Q 011256 346 KIWDVKS-QANVAKF--DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 346 ~iwd~~~-~~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 392 (490)
.++..+. +..+..+ ......++++.|.+++..++++..+| +.++...
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8775443 2222222 22345688999986667888888888 8888765
No 362
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.87 E-value=0.012 Score=57.43 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=85.3
Q ss_pred CeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC----CEEEEEeCCCcEEEEeCCCCC
Q 011256 189 GIVSLDIHYSKDVIATGG--VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG----DLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~s~dg~i~iwd~~~~~ 262 (490)
+|..++|......+.|.- .+|.+++=| ...+..| ..|..+.|.|-+ .-|++......|.||.+....
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 677899984333444432 233333222 2333333 458999999843 245556667899999875321
Q ss_pred --ccceeeeecc-ccc----ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 263 --NYDCKHTLKD-HTA----EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 263 --~~~~~~~~~~-h~~----~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
..+....-.. ... --..+.|||....|++-.....-.++++............ ..+.|.|.+|.+||+.
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----TSGLIHCACWTKDGQR 169 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----CCceEEEEEecCcCCE
Confidence 1111111111 111 1246779999988877766555555665443332222211 1267999999999987
Q ss_pred EEEEcC-CCcEEEEEC
Q 011256 336 LGTGTS-EALVKIWDV 350 (490)
Q Consensus 336 l~~g~~-dg~i~iwd~ 350 (490)
|+++-. .=.-+|||-
T Consensus 170 LVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEeCCeEEEEEecC
Confidence 776533 335678874
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.86 E-value=0.023 Score=55.95 Aligned_cols=238 Identities=16% Similarity=0.193 Sum_probs=123.9
Q ss_pred EEEEEEeeCCCEEEEE-eCCC----cEEEEeCCCCCccceee-eecccccceEEEEEecCCCEEEEEECCC---------
Q 011256 232 VTSVKFVTEGDLFLTG-SADK----TVRVWQGSEDGNYDCKH-TLKDHTAEVQAVTVHATNKYFVTASLDN--------- 296 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~dg--------- 296 (490)
+....++|+|++++.+ +..| .++++|+.++ +.+. .+.. .....+.|.++++.|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4467789999987755 3444 4999999886 3322 2221 1223499999988777665433
Q ss_pred --eEEEEeCCCCeEE--EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC----CcEEEEECCCC----ceeeeecCCCC
Q 011256 297 --TWCFYDLSSGICL--TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQ----ANVAKFDGHVG 364 (490)
Q Consensus 297 --~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~----~~~~~~~~~~~ 364 (490)
.|+.|.+.+...- ..+... ........+..++|+++|+..... ..+++.|+..+ .....+.....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~---~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEP---DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-T---TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CcEEEEEECCCChHhCeeEEeec---CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 3788888766432 222211 111125678899999987764322 35888888774 22333332333
Q ss_pred Ce-EEEEEcCCCCEEEEEeCC---C-EEEEECCCCcc--ee-eeecCCCCCCeeEEEEcCCCCEEEEEec-C----eEEE
Q 011256 365 AV-TAISFSENGYYLATAAHD---G-VKLWDLRKLKN--FR-SFESSDSETPTNSVDFDHSGSYLAVASA-D----IRVY 431 (490)
Q Consensus 365 ~i-~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~--~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~~-d----i~v~ 431 (490)
.+ ..+... ++.+++....+ + |...++..... .. .+..+.....+..+.. .+.+|+.... + ++++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 33 344433 55555554444 2 66678777653 12 3333221223444444 4555555433 3 7777
Q ss_pred EEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEE--EeC--CCcEEEecCCCCC
Q 011256 432 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV--GSM--DRNLRVFGLPGND 485 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~--dg~v~iw~~~~~~ 485 (490)
++. ........... ..+.|..+...+++..+.. .|. -+.++.||+.+++
T Consensus 355 ~~~----~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLD----DGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-----TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECC----CCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 762 12222222222 2455666665565554332 222 3567777777665
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.84 E-value=0.018 Score=56.28 Aligned_cols=166 Identities=15% Similarity=0.208 Sum_probs=84.8
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCc-----eE
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY-----TS 326 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----~~ 326 (490)
.|.||+... ..+..+.-..+.|.++.|.. ...|++...||.+++||+.... .+... .......| ..
T Consensus 62 ~I~iys~sG----~ll~~i~w~~~~iv~~~wt~-~e~LvvV~~dG~v~vy~~~G~~---~fsl~-~~i~~~~v~e~~i~~ 132 (410)
T PF04841_consen 62 SIQIYSSSG----KLLSSIPWDSGRIVGMGWTD-DEELVVVQSDGTVRVYDLFGEF---QFSLG-EEIEEEKVLECRIFA 132 (410)
T ss_pred EEEEECCCC----CEeEEEEECCCCEEEEEECC-CCeEEEEEcCCEEEEEeCCCce---eechh-hhccccCcccccccc
Confidence 477887655 33433332237899999986 4566677899999999987433 22211 00111122 22
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECCCCc-eeeee---cC-----CCC-CeEE-EEEcCCCCEEEEEeCCC-EEEEECCCC
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKF---DG-----HVG-AVTA-ISFSENGYYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~---~~-----~~~-~i~~-l~~s~~~~~l~~~~~d~-i~iwd~~~~ 394 (490)
..+..+|-.+. +.++.+.+..-.... ....+ .. +.. .... ..++.+....+....++ +.+.+-...
T Consensus 133 ~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 133 IWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence 23333553333 344555444322211 11111 10 000 0111 22344444444444443 554433222
Q ss_pred cceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEe
Q 011256 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 434 (490)
Q Consensus 395 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 434 (490)
+. +. ..+++..+++||+|+++|.-..+..+|-+.
T Consensus 211 ~~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 211 KQ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred cc---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 11 11 146899999999999999988876666553
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=9.1e-05 Score=71.74 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEE-EEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVT-SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
..|.-+.|+|.-+++|++..+|.|.++.+. .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|+..+. .
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~---~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG---R 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC---c
Confidence 468889999999999999999999999987 777888887888888 99999999999999999999999998874 2
Q ss_pred eee-ecccccceEEEEEe
Q 011256 267 KHT-LKDHTAEVQAVTVH 283 (490)
Q Consensus 267 ~~~-~~~h~~~v~~l~~~ 283 (490)
+.. ...-...|.++.|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 222 22344567777775
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.79 E-value=0.0019 Score=66.65 Aligned_cols=137 Identities=13% Similarity=0.137 Sum_probs=92.1
Q ss_pred eCCCcEEEEeCCCCcEEEEeccCccC-EEEEEEee-----CCCEEEEEeCCCcEEEEeCCCCCccceeee-e--cccccc
Q 011256 206 GVDTNAVLFDRPSGQIVTTLSGHSKK-VTSVKFVT-----EGDLFLTGSADKTVRVWQGSEDGNYDCKHT-L--KDHTAE 276 (490)
Q Consensus 206 ~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~--~~h~~~ 276 (490)
.....|+-.|+..|+.+..+..|... |..++-.. .....+.|-.++.+..||.+-.++ +++.. . ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccccCCC
Confidence 34578899999999999999877754 55553221 123466777888999999886542 22211 1 123345
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEEC
Q 011256 277 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV 350 (490)
Q Consensus 277 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 350 (490)
..|++-.. ..+||+|+.+|.|++||-- |..-.+. ..+...+|..+.++.||+++++.+. ..+.+++.
T Consensus 580 Fs~~aTt~-~G~iavgs~~G~IRLyd~~-g~~AKT~----lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTE-DGYIAVGSNKGDIRLYDRL-GKRAKTA----LPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ceEEEecC-CceEEEEeCCCcEEeeccc-chhhhhc----CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 66776653 4589999999999999943 3222221 2233489999999999999887654 56777764
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0066 Score=58.15 Aligned_cols=143 Identities=12% Similarity=0.122 Sum_probs=94.7
Q ss_pred EEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC-------EEEEEECCCeEEEEeCCCCeE-EEEeecC
Q 011256 244 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSSGIC-LTQVSDA 315 (490)
Q Consensus 244 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~s~~~dg~i~iwd~~~~~~-~~~~~~~ 315 (490)
|.++..-..++-.|++.+ +.+....-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... .......
T Consensus 349 l~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred eeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 444555566777788776 66666666655 77777777653 234566788899999874322 1111111
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECC
Q 011256 316 GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLR 392 (490)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~ 392 (490)
..........|++-..+| ++++|+.+|.|++||- .+. ....+.+...+|..+..+.+|++++..+...+.+.++.
T Consensus 425 kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 111122445666665555 6889999999999996 443 33445667789999999999999998887766666653
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.021 Score=52.92 Aligned_cols=221 Identities=13% Similarity=0.132 Sum_probs=128.1
Q ss_pred EecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeec-
Q 011256 194 DIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK- 271 (490)
Q Consensus 194 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~- 271 (490)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++.. -+.+++.+.+.....+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 3666666 4555556788888988766432 222 2233455554444555555443 35667765443211221111
Q ss_pred c-cccceEEEEEecCCCEEEEEEC-----------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 272 D-HTAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 272 ~-h~~~v~~l~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
+ .....+.+...|+|.+.+..-. -|.++.+|. .+..+..+.. +-..-+.++|+||++.|+..
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-----~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-----DLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-----cEEecCceEECCCCCEEEEE
Confidence 1 1235667888888887665433 133444443 3444443332 11345789999999877776
Q ss_pred cC-CCcEEEEECCC--C----c-eeeeecCCCCCeEEEEEcCCCCEEEEEeCC--CEEEEECCCCcceeeeecCCCCCCe
Q 011256 340 TS-EALVKIWDVKS--Q----A-NVAKFDGHVGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPT 409 (490)
Q Consensus 340 ~~-dg~i~iwd~~~--~----~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~i~iwd~~~~~~~~~~~~~~~~~~i 409 (490)
.. .+.|.-|++.. + + ....+....+..-.++...+|++.+++..+ .|.+|+.. ++.+..+..+ ...+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~ 257 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRP 257 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCC
Confidence 55 47788887752 1 1 122223345666778888888887655554 39999988 8888888876 3567
Q ss_pred eEEEEc-CCCCEEEEEecC
Q 011256 410 NSVDFD-HSGSYLAVASAD 427 (490)
Q Consensus 410 ~~i~~s-~~~~~l~~~~~d 427 (490)
++++|- ++.+.|++.+..
T Consensus 258 t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 258 TNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ccceEeCCCcCEEEEEecC
Confidence 777774 445555555443
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.75 E-value=0.074 Score=55.13 Aligned_cols=285 Identities=13% Similarity=0.123 Sum_probs=151.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-ccCccCEEEEEEeeCC------CEEEEEeCCCcEEEEeCCC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTEG------DLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~------~~l~s~s~dg~i~iwd~~~ 260 (490)
..+++...+.+...++.++.++.+...+...+.+.... ......|.|+.++|-| ++++.|.++..+.+.-...
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 35555555666667777777777776676655422111 2235679999999742 2788888887776654433
Q ss_pred CCccceeeeec--ccccceEEEEEecCCCEEEEEECCCeEEEEeCC--CCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 261 DGNYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 261 ~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
+....+...+. .-...|.-..+-.+..+|+++..||.+..|.+. ++..-...+. . -...++.--.|+..+..-
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~--~-lGt~P~~Lr~f~sk~~t~ 644 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV--T-LGTQPISLRTFSSKSRTA 644 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccc--c-cCCCCcEEEEEeeCCceE
Confidence 32112222122 122345555666668899999999998876554 4432221111 1 111455555666655443
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCC--CCEEEEEeCCCEEEEECCCCcce--eeeecCCCCCCeeEE
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSEN--GYYLATAAHDGVKLWDLRKLKNF--RSFESSDSETPTNSV 412 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~i~iwd~~~~~~~--~~~~~~~~~~~i~~i 412 (490)
+.+..|.-..+|..+ ++.+.+--..+.--.-+.|+.+ +..|+.+..+.+++.-+..-+.+ ++++. ......+
T Consensus 645 vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl---~~~prrI 720 (1096)
T KOG1897|consen 645 VFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL---GESPRRI 720 (1096)
T ss_pred EEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC---CCChhhe
Confidence 444455555566543 3333221111111111223333 45677777777777765544332 33333 4566778
Q ss_pred EEcCCCCEEEEEecC----------------eEEEEEeecCCcceEeeeec--CCCCCcceEEEEEcCC-CCeEEEEe--
Q 011256 413 DFDHSGSYLAVASAD----------------IRVYQVASVKADWNCIKTFP--DLSGTGKATCVKFGPD-AKYIAVGS-- 471 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d----------------i~v~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~s~~-- 471 (490)
++.+....+++.+.. ++++|- ++...+.... .....-.+.++.|..| +.++++|.
T Consensus 721 ~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~----nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~ 796 (1096)
T KOG1897|consen 721 CYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ----NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL 796 (1096)
T ss_pred EecccceEEEEEecccccchhhcCCcceEEEEEEecC----CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe
Confidence 887766555554432 334432 2233322221 1111224555668877 77777775
Q ss_pred --------CCCcEEEecCCC
Q 011256 472 --------MDRNLRVFGLPG 483 (490)
Q Consensus 472 --------~dg~v~iw~~~~ 483 (490)
..|.|.||.+..
T Consensus 797 v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 797 VYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eccCCCCcccceEEEEEEec
Confidence 357777777765
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.72 E-value=0.0034 Score=60.44 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=112.3
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeee--ecc------cccceEEEEEec-----CC---
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT--LKD------HTAEVQAVTVHA-----TN--- 286 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~------h~~~v~~l~~~~-----~~--- 286 (490)
.-+....++|++++.+ |=.+++.|..+|.+.|.|++.. ..+.. +.. ....|+++.|.. |+
T Consensus 80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 3445567899999987 5568999999999999999764 33322 222 334688888863 22
Q ss_pred CEEEEEECCCeEEEEeCCC---CeEEEEeecCCCCCCCCCceEEE-EcCC-----------------C---cEEEEEcCC
Q 011256 287 KYFVTASLDNTWCFYDLSS---GICLTQVSDAGTDGRPEGYTSAA-FHPD-----------------G---LILGTGTSE 342 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~-~~~~-----------------~---~~l~~g~~d 342 (490)
-.+++|...|.+.+|.+.- +.....+... ...+.+.+..+. ++.+ | .-+++...+
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~-~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGA-TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEE-E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeec-cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 3788999999999997741 2222222111 112224444443 3211 0 123333446
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEc-----CCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC--CCCeeEEEE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFS-----ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDF 414 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-----~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~ 414 (490)
..++++...+.+.........-....+.+- ..+..|++-..+| |++|.+...+.+........ ...+....+
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 779999998877766554222233344452 3567788888888 99999999998887776421 123556778
Q ss_pred cCCCCEEEEEecC-eEEEEE
Q 011256 415 DHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 415 s~~~~~l~~~~~d-i~v~~~ 433 (490)
+++|..++..+.. +.++.+
T Consensus 315 s~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 315 SRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp -TTS-EEEE-SSSEEEEEEE
T ss_pred CCCCCEEEEeCcccEEEEEE
Confidence 9999998887775 555554
No 371
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.72 E-value=0.012 Score=59.96 Aligned_cols=218 Identities=14% Similarity=0.203 Sum_probs=116.8
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCcEEEEecc-CccCEEEEEEeeCCCEEEEEeCC------CcEEEEeCCCCCc
Q 011256 197 YSKDVIATGGVDT------NAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQGSEDGN 263 (490)
Q Consensus 197 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~~~~~~ 263 (490)
..+.+++.||.++ .+..||..++.......- +...-.++++. ++.+.++||.| .++..||...+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-
Confidence 3466778888774 577888877644332211 11222333333 66788899988 356778877643
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCe-----EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT-----WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
|..+..+...........+ +|...++||.||. +..||..+.+....-.... ..-......-+|.+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-----~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-----RRSGHGVAVLGGKLYII 433 (571)
T ss_pred eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-----ceeeeEEEEECCEEEEE
Confidence 4444333322222222222 6888899998864 6778877765433322110 11111222236888888
Q ss_pred EcCCC------cEEEEECCCCcee--eeecCCCCCeEEEEEcCCCCEEEEEeCCC------EEEEECCCCcceeeeecCC
Q 011256 339 GTSEA------LVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLKNFRSFESSD 404 (490)
Q Consensus 339 g~~dg------~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d~------i~iwd~~~~~~~~~~~~~~ 404 (490)
|+.++ .+..||..+++-. ..+........ ++.. ++.+.+.|+.++ |..||..+.+-...-....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 88554 5678888776432 22221122222 2222 677888887664 6778888765543322211
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC
Q 011256 405 SETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
....+.... -++...++|+.+
T Consensus 512 ~rs~~g~~~--~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 512 PRSAVGVVV--LGGKLYAVGGFD 532 (571)
T ss_pred ccccccEEE--ECCEEEEEeccc
Confidence 122222222 245666666655
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0002 Score=69.43 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=78.0
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceE-EEEEecCCCEEEEEECCCeEEEEeCCCCeE
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ-AVTVHATNKYFVTASLDNTWCFYDLSSGIC 308 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 308 (490)
..|.-+.|+|.-+++|++..+|.|.+..++- ..+.++.-|...++ +++|.|||+.++.|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW----QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc----ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 4578899999999999999999999988763 67777777777787 999999999999999999999999999988
Q ss_pred EEEeecCCCCCCCCCceEEEEcC
Q 011256 309 LTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
+...... ....|.++.|.+
T Consensus 97 l~~~~~s----~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFS----VETDISKGIWDR 115 (665)
T ss_pred eeccccc----cccchheeeccc
Confidence 8774221 125677777764
No 373
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.035 Score=49.48 Aligned_cols=272 Identities=13% Similarity=0.117 Sum_probs=153.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE---EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
-+..+.++ +++...+..+.-++|.|+.+..... .+.. .+--.+ |.-.|++...+..|.-+-+.|+.+.....
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34556665 5677777777889999987654332 2221 122233 34478888888866667889998876555
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
....+......-..++.+ |++-..+..|+-+.+.|+........+..... ...+.++..+++..+++..+ --+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~---g~g~~sv~vsdnr~y~vvy~--egv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT---GPGTYSVSVSDNRAYLVVYD--EGV 235 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec---CCceEEEEecCCeeEEEEcc--cce
Confidence 655555555555667665 88888888999999999976554333221111 13678888887776666643 347
Q ss_pred EEEECCCCceeeeecC--CCC--CeEEEEEcCCCCEEEEEeCC-CEEEEECCCCcceeeeecCCC-CCCeeEEEEcCCCC
Q 011256 346 KIWDVKSQANVAKFDG--HVG--AVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDS-ETPTNSVDFDHSGS 419 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~--~~~--~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~~~~~~~~~~~-~~~i~~i~~s~~~~ 419 (490)
.+-|....+....+.. ... .++.+.. .+++......+ ++.+-|+.+............ ...-..+.. .+.
T Consensus 236 livd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~ 311 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGN 311 (370)
T ss_pred EEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecC
Confidence 7788776654433321 112 2232344 35555555544 477777765432211111110 112223322 355
Q ss_pred EEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 420 YLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 420 ~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
++..+..+ ..+.+..... ......+. ...+.+.+.+-+.+++.+...+|.+.||+..
T Consensus 312 y~yiadkn~g~vV~~s~~s----~m~~~~g~--~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 312 YNYIADKNTGAVVDASPPS----MMDKRPGR--PTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eeEeccCCceEEEeCCChh----hcccccCc--ceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 55555555 5555542211 11111111 1223344444456688899999999999864
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.66 E-value=0.0052 Score=46.56 Aligned_cols=100 Identities=29% Similarity=0.359 Sum_probs=66.9
Q ss_pred EEEEEEee---CC-CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe
Q 011256 232 VTSVKFVT---EG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI 307 (490)
Q Consensus 232 v~~l~~~~---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~ 307 (490)
|+++++.. +| +.|++||.|..|++|+-+ ..+..+. -.+.|+++.-... ..|+.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-
Confidence 66777654 33 479999999999999754 3455544 3456777776644 77999999999999986432
Q ss_pred EEEEeecCCCCCCCCCceEEEEcC---CC-cEEEEEcCCCcEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHP---DG-LILGTGTSEALVK 346 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~g~~dg~i~ 346 (490)
+...+.. ..+.++.+.. || .-|++|-.+|.|-
T Consensus 74 -lWRiKSK------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -LWRIKSK------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeeccC------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222211 3355655543 33 4788888888764
No 375
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.64 E-value=0.059 Score=50.80 Aligned_cols=243 Identities=12% Similarity=0.093 Sum_probs=112.4
Q ss_pred eCCCCcEEEEeccCccCEEEE-----EEeeCCCEE-EEEeCCCc--EEEEeCCCCCccceeeeecccc-cceEEEEEecC
Q 011256 215 DRPSGQIVTTLSGHSKKVTSV-----KFVTEGDLF-LTGSADKT--VRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHAT 285 (490)
Q Consensus 215 d~~~~~~~~~~~~h~~~v~~l-----~~~~~~~~l-~s~s~dg~--i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~ 285 (490)
|..+|..+..+.........+ +|.++|+.| +++..||. +.+.|+.++ .+..+.... .......++|+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~----~i~QLTdg~g~~~~g~~~s~~ 91 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG----EITQLTDGPGDNTFGGFLSPD 91 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-----EEEE---SS-B-TTT-EE-TT
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC----EEEECccCCCCCccceEEecC
Confidence 667777777776544433333 566788754 44445665 455566663 344444332 22334566788
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEE--cCCCcEEEEEc----------------------C
Q 011256 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF--HPDGLILGTGT----------------------S 341 (490)
Q Consensus 286 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~g~----------------------~ 341 (490)
++.++....+..|.-.|+.+.+....+.... ..+-...| +.|+..++-.- .
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~-----~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVPD-----DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE--T-----TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECCc-----ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 8888777677789999999987655444321 22323444 34555543321 1
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCC---E--EEEECCC-CcceeeeecCCCCCCeeEEEE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSEN-GYYLATAAHDG---V--KLWDLRK-LKNFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~d~---i--~iwd~~~-~~~~~~~~~~~~~~~i~~i~~ 414 (490)
.+.|...|+.+|+....+. ....+..+.|+|. ..+|+-|-++. | +||=++. +.....+........+..=-|
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw 245 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW 245 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence 2356666888877655554 4567889999996 45555666552 3 7786653 223333333222344556678
Q ss_pred cCCCCEEEEEec-----CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC
Q 011256 415 DHSGSYLAVASA-----DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 473 (490)
Q Consensus 415 s~~~~~l~~~~~-----di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 473 (490)
.|+|..|..-+. +..|..++........+... .....+-.++||++++-=|.|
T Consensus 246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~------p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM------PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------SEEEEEE-TTSSEEEEEE--
T ss_pred cCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC------CceeeeEEcCCCCEEEecCCC
Confidence 999988766433 13333333222211222211 123455567898877653433
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.61 E-value=0.008 Score=45.55 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=67.8
Q ss_pred eEEEEecC---CC-CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 190 IVSLDIHY---SK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 190 I~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
|+++++.. +| +-|++|+.|..|++|+- ...+..+.. .+.|++++-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----
Confidence 55666554 33 48999999999999985 466666664 455778776655 5689999999999997543
Q ss_pred eeeeecccccceEEEEEec-C--C-CEEEEEECCCeEE
Q 011256 266 CKHTLKDHTAEVQAVTVHA-T--N-KYFVTASLDNTWC 299 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~-~--~-~~l~s~~~dg~i~ 299 (490)
.+...+.. ..++++.+.. + | ..|++|-.+|.|-
T Consensus 73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22333322 2366666653 2 2 3788888888764
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.60 E-value=0.00018 Score=43.03 Aligned_cols=39 Identities=38% Similarity=0.790 Sum_probs=34.1
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.57 E-value=0.0086 Score=56.74 Aligned_cols=202 Identities=11% Similarity=0.171 Sum_probs=101.9
Q ss_pred CCEEEEEE-CCCeEEEEeCCC----CeEEEEeecCC--CCCCCCCceEEEEcCCCcEEEEE--c----CCCcEEEEECCC
Q 011256 286 NKYFVTAS-LDNTWCFYDLSS----GICLTQVSDAG--TDGRPEGYTSAAFHPDGLILGTG--T----SEALVKIWDVKS 352 (490)
Q Consensus 286 ~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~g--~----~dg~i~iwd~~~ 352 (490)
.++|+..+ ..+.|+|+|+.+ .+..+.+.... ....-.....+..-|+|.+++++ . .-|-+.++|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45677766 678899999873 34444443200 00000223345556788888774 2 235688888887
Q ss_pred CceeeeecCCC---CCeEEEEEcCCCCEEEEEe--------------------CCC-EEEEECCCCcceeeeecCCCCCC
Q 011256 353 QANVAKFDGHV---GAVTAISFSENGYYLATAA--------------------HDG-VKLWDLRKLKNFRSFESSDSETP 408 (490)
Q Consensus 353 ~~~~~~~~~~~---~~i~~l~~s~~~~~l~~~~--------------------~d~-i~iwd~~~~~~~~~~~~~~~~~~ 408 (490)
.+....++... ..-..+-|.|..+.++++. .+. +.+||+.+.+.++++........
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 77777765432 2345677788777887763 122 99999999999999988643334
Q ss_pred eeEEEE--cCCCCEEEEEecC-eEEEEEee-cCCcceEeeeecCCC---------C--------CcceEEEEEcCCCCeE
Q 011256 409 TNSVDF--DHSGSYLAVASAD-IRVYQVAS-VKADWNCIKTFPDLS---------G--------TGKATCVKFGPDAKYI 467 (490)
Q Consensus 409 i~~i~~--s~~~~~l~~~~~d-i~v~~~~~-~~~~~~~~~~~~~~~---------~--------~~~v~~~~~s~~~~~l 467 (490)
+..+.| +|+..+-++++.- -.||.+.. ....|...+.+.... . ..-|+.+.+|.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 556666 4556666665543 44554433 233454433322110 0 2357999999999998
Q ss_pred EEEe-CCCcEEEecCCCCCCC
Q 011256 468 AVGS-MDRNLRVFGLPGNDAP 487 (490)
Q Consensus 468 ~s~~-~dg~v~iw~~~~~~~~ 487 (490)
..++ .+|.|+.||+.....|
T Consensus 327 Yvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 327 YVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEETTTTEEEEEE-SSTTS-
T ss_pred EEEcccCCcEEEEecCCCCCC
Confidence 8776 5899999999887665
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.56 E-value=0.1 Score=54.20 Aligned_cols=278 Identities=11% Similarity=0.193 Sum_probs=155.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEE--eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.|.-..|--+..+|.++..||.+.-|.+. ++..-.. ..-...++.=-.|+..+..-+.+..|+-..+|..+..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--- 661 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK--- 661 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc---
Confidence 45555666667899999999998777544 4433211 1223456666667665554444455666667765442
Q ss_pred ceeeeecccccceEEEE-EecC--CCEEEEEECCCeEEEEeCCCCeE--EEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 265 DCKHTLKDHTAEVQAVT-VHAT--NKYFVTASLDNTWCFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~-~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
-+...+. -..+..++ |+.+ ...++++. .+.+.+.-+..-.. +.++... .....+++.+...++++.
T Consensus 662 Lv~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~------~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 662 LVYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG------ESPRRICYQESSLTFGVL 732 (1096)
T ss_pred EEEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC------CChhheEecccceEEEEE
Confidence 1111111 11122222 2211 23455544 45666665544322 2222221 455677777755555543
Q ss_pred cCC--------------CcEEEEECCCCceeeeecCC----CCCeEEEEEcCC-CCEEEEEeC----------CC-EEEE
Q 011256 340 TSE--------------ALVKIWDVKSQANVAKFDGH----VGAVTAISFSEN-GYYLATAAH----------DG-VKLW 389 (490)
Q Consensus 340 ~~d--------------g~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~-~~~l~~~~~----------d~-i~iw 389 (490)
+.. ..++++|-++-+.+...+-. ...|.++.|..| +.++++|.. .| |.+|
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 321 14667776665554433211 124556668877 778887753 24 7888
Q ss_pred ECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEE
Q 011256 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV 469 (490)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 469 (490)
.+...+.+.......-.+.+.++.. -+|+++|.-+..+++|++.. .+.+..-.. +..++..+...-.|..+++
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~~vrLye~t~----~~eLr~e~~--~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQSVRLYEWTT----ERELRIECN--ISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhh-hCCeEEEecCcEEEEEEccc----cceehhhhc--ccCCeEEEEEEecCcEEEE
Confidence 7776444444433333455555543 36888888787899999833 222322222 2557778888888999999
Q ss_pred EeCCCcEEEecCCCCC
Q 011256 470 GSMDRNLRVFGLPGND 485 (490)
Q Consensus 470 ~~~dg~v~iw~~~~~~ 485 (490)
|..=+.+.+......+
T Consensus 886 gDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDE 901 (1096)
T ss_pred eeccceEEEEEEeccC
Confidence 9988888877665544
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.53 E-value=0.059 Score=48.10 Aligned_cols=189 Identities=11% Similarity=0.061 Sum_probs=118.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCcEEEEeccCcc-CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.-...+.|..+|.++-+.|.-| .|+.+|+.+++......-... ---.++.. ++.+..-.-.++...+||..+-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl--- 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL--- 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT---
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc---
Confidence 3445677867788888777766 688899999988765542211 11123332 3444445567899999998764
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
+.+.++. ..+.=+.|+ .+++.|+.+.....+.++|..+.+....+........-..++-+.+. +|.+.|=.-....
T Consensus 121 ~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 121 KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 5555554 234556666 46788888888889999999888777666533211112345666765 6777777777778
Q ss_pred EEEEECCCCceeeeecC---------------CCCCeEEEEEcCCCCEEEEEeCC
Q 011256 345 VKIWDVKSQANVAKFDG---------------HVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~---------------~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
|...|..+|+.+..+.- ...-.+.|++.|....|.+.+..
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 99999999988776520 13457899999886666665554
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.53 E-value=0.082 Score=50.99 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=58.3
Q ss_pred EEEecCCCCEEEEEeCCCcEEE---EeCC-----CCcEEEEec---cCc--cCEEEEEEee-----------CCCEEEEE
Q 011256 192 SLDIHYSKDVIATGGVDTNAVL---FDRP-----SGQIVTTLS---GHS--KKVTSVKFVT-----------EGDLFLTG 247 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~i---wd~~-----~~~~~~~~~---~h~--~~v~~l~~~~-----------~~~~l~s~ 247 (490)
+++.+|++++||.+..+..+.+ |+.. .+....... .+. ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678899999999987776666 5331 112222211 121 5688887755 24579999
Q ss_pred eCCCcEEEEeCCCCCccceeeeecccccceEEEEEec
Q 011256 248 SADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA 284 (490)
Q Consensus 248 s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 284 (490)
..+|.|++|.... ..+..-.-|..+|..|.+..
T Consensus 86 ~ssG~vrfyte~G----~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENG----VLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccc----hHHHHHhcCccceEEEEecc
Confidence 9999999998644 34444445778888887743
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.47 E-value=0.026 Score=57.55 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=103.7
Q ss_pred cceEEEEEecCCCEEEEEE------CCC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC----
Q 011256 275 AEVQAVTVHATNKYFVTAS------LDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---- 342 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---- 342 (490)
..+...+++|+|+.++... .|+ .|.+++... .. ..+... ...+.-.|+|||..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g------~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG------HSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC------CCCCCceECCCCCceEEEecCcceE
Confidence 4678899999999887765 243 455556422 22 233211 236778899998877665432
Q ss_pred --------CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE---EECCCCcc-e---eeeecCCCCC
Q 011256 343 --------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKL---WDLRKLKN-F---RSFESSDSET 407 (490)
Q Consensus 343 --------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~i---wd~~~~~~-~---~~~~~~~~~~ 407 (490)
+.+.+.++..+.... ...+.|..+.|||||..++....+.|.+ -....+.. + ..+.. ....
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP-GLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-ccCC
Confidence 233333444333222 2346799999999999988877544655 44333331 1 11111 1133
Q ss_pred CeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 408 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
.+.++.|..++.++ ++..+ ..+|.+......... +........+..++=+++ .|+.+..+|.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~---~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDA---LPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCccccc---cCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 46889999999865 44443 556666443222111 122112456777777763 45566667644
No 383
>PHA02713 hypothetical protein; Provisional
Probab=97.42 E-value=0.033 Score=56.83 Aligned_cols=218 Identities=11% Similarity=0.110 Sum_probs=108.8
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
.+..||..+. .+..+..+...... .+++. -++..++.||.+ ..+..||..+.......... ......
T Consensus 273 ~v~~yd~~~~-~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~---~~R~~~- 345 (557)
T PHA02713 273 CILVYNINTM-EYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI---KNRCRF- 345 (557)
T ss_pred CEEEEeCCCC-eEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc---chhhce-
Confidence 4667777663 22222222211111 12222 256777777753 34778898877643221111 001111
Q ss_pred EEEEcCCCcEEEEEcCCC-----cEEEEECCCCcee--eeecCCCCCeEEEEEcCCCCEEEEEeCC--------------
Q 011256 326 SAAFHPDGLILGTGTSEA-----LVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD-------------- 384 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d-------------- 384 (490)
+ ...-+|.+.+.|+.++ .+..||..+.+-. ..+.........+.+ +|++.+.|+.+
T Consensus 346 ~-~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 346 S-LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred e-EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccc
Confidence 2 2223678888888764 4788998765322 122111111222232 67777777643
Q ss_pred ----------CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC------eEEEEEeecC-CcceEeeeec
Q 011256 385 ----------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVK-ADWNCIKTFP 447 (490)
Q Consensus 385 ----------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~-~~~~~~~~~~ 447 (490)
.+..||..+.+-...-......... +++ .-+|.+.++|+.+ -.+..++... ..|..+..++
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE 500 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence 1667887765432211111111111 122 2346666666542 1234444444 4688777665
Q ss_pred CCCCCcceEEEEEcCCCCeEEEEeCCC--cEEEecCCCCC
Q 011256 448 DLSGTGKATCVKFGPDAKYIAVGSMDR--NLRVFGLPGND 485 (490)
Q Consensus 448 ~~~~~~~v~~~~~s~~~~~l~s~~~dg--~v~iw~~~~~~ 485 (490)
.. ......+.+ +|+..++||.|| .+-.||..+++
T Consensus 501 ~~--r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 501 SR--LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cc--cccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 43 222222333 788889999998 67777776653
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.068 Score=47.83 Aligned_cols=200 Identities=8% Similarity=0.113 Sum_probs=126.0
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccC-ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
+...+ ..|.++.|+|+.+.|++......-.|+=...|+.+.++.-. -...-.+.+..+|.+.++--.++.+.++.++.
T Consensus 81 i~g~~-~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGET-ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccc-ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34444 44999999999998888888888888877789988876521 22345678887888877777888888888766
Q ss_pred CCcccee----eee---cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC-----CCCCceEEE
Q 011256 261 DGNYDCK----HTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG-----RPEGYTSAA 328 (490)
Q Consensus 261 ~~~~~~~----~~~---~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~ 328 (490)
+...... ..+ ...+.....++|.|....|+.+=.-.-+.||.+..+............. .-..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5321111 111 1125678899999999888888877777777665433111111000000 013467788
Q ss_pred EcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCC---------CCCeEEEEEcCCCCEEEEEeC
Q 011256 329 FHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGH---------VGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 329 ~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---------~~~i~~l~~s~~~~~l~~~~~ 383 (490)
|++ .+.+++.+.+++.+.-.|.. |..+..+.-+ -.....++..++|.+.+++--
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 887 56788888888888888864 3333333211 113345667666665554433
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.40 E-value=0.077 Score=50.53 Aligned_cols=223 Identities=12% Similarity=0.126 Sum_probs=100.9
Q ss_pred CCCEEEEEe-CCCcEEEEeCCC----CcEEEEecc---Cc----cCEEEEEEeeCCCEEEEEe--CC----CcEEEEeCC
Q 011256 198 SKDVIATGG-VDTNAVLFDRPS----GQIVTTLSG---HS----KKVTSVKFVTEGDLFLTGS--AD----KTVRVWQGS 259 (490)
Q Consensus 198 ~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~---h~----~~v~~l~~~~~~~~l~s~s--~d----g~i~iwd~~ 259 (490)
+.++|+..+ ..+.|+|+|+.+ .++.+.+.. +. ..-..+.-.|+|++++++- .+ |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 788999999874 344555542 11 1122333457888888752 22 346667655
Q ss_pred CCCccceeeeecc---cccceEEEEEecCCCEEEEEEC--------------------CCeEEEEeCCCCeEEEEeecCC
Q 011256 260 EDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASL--------------------DNTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 260 ~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~ 316 (490)
+- ........ ....-..+-|+|..+.++|... ..++.+||+.+.+.++.+....
T Consensus 166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp T-----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cc---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 42 33333332 1233456778898888888643 3579999999999999887542
Q ss_pred CCCCCCCceEEEEcC--CCcEEEEE-cCCCcEEEEEC-CCCc----eeeeecC-----------------CCCCeEEEEE
Q 011256 317 TDGRPEGYTSAAFHP--DGLILGTG-TSEALVKIWDV-KSQA----NVAKFDG-----------------HVGAVTAISF 371 (490)
Q Consensus 317 ~~~~~~~v~~~~~~~--~~~~l~~g-~~dg~i~iwd~-~~~~----~~~~~~~-----------------~~~~i~~l~~ 371 (490)
. ......+.|.. +..+=++| ...+.|..|-- ..++ .+..+.. -..-|+.|.+
T Consensus 243 ~---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 243 E---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp T---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred C---CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 1 01233455543 33333332 23444544432 3331 2222211 0245799999
Q ss_pred cCCCCEEEEEeCC-C-EEEEECCCCccee---eeecC--------------CCCCCeeEEEEcCCCCEEEEEec
Q 011256 372 SENGYYLATAAHD-G-VKLWDLRKLKNFR---SFESS--------------DSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 372 s~~~~~l~~~~~d-~-i~iwd~~~~~~~~---~~~~~--------------~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
|.|.++|..+.-. | |+.||+......+ .+... ...+...-+..|-||+.|++.++
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999999887765 6 9999998754322 22111 01223466788888988887764
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.39 E-value=0.028 Score=57.27 Aligned_cols=229 Identities=16% Similarity=0.206 Sum_probs=119.9
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCe
Q 011256 240 EGDLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGI 307 (490)
Q Consensus 240 ~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 307 (490)
.+.+++.||.+ ..+..||..++ .+.....+. ....-.++++. ++..+++||.| .++..||....+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 34456666665 35777887664 233333333 22223444444 56788889888 357788988887
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-----cEEEEECCCCce--eeeecCCCCCeEEEEEcCCCCEEEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~ 380 (490)
........ .. ...... ..-+|.+.++|+.|| +|-.||..+.+- +..+.......-...+ +|.+.++
T Consensus 361 W~~~a~M~-~~--R~~~~v--~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~ 433 (571)
T KOG4441|consen 361 WTPVAPMN-TK--RSDFGV--AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYII 433 (571)
T ss_pred eeccCCcc-Cc--ccccee--EEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEE
Confidence 54422211 11 111111 122688999999987 477788776532 2212111122222233 6777777
Q ss_pred EeCCC-------EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecC
Q 011256 381 AAHDG-------VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 381 ~~~d~-------i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~ 448 (490)
|+.++ +..||..+......-.......... ++. -++.+.++|+.+ -.|-.++.....|..+.....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 77542 6788887765433222221122222 222 356666777655 123333344566777654433
Q ss_pred CCCCcceEEEEEcCCCCeEEEEeCCCc-----EEEecCCCC
Q 011256 449 LSGTGKATCVKFGPDAKYIAVGSMDRN-----LRVFGLPGN 484 (490)
Q Consensus 449 ~~~~~~v~~~~~s~~~~~l~s~~~dg~-----v~iw~~~~~ 484 (490)
. ...+..+.+ ++...++||.||. |..||-..+
T Consensus 512 ~--rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 P--RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred c--cccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 2 222222333 6677788888874 556655443
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.31 E-value=0.045 Score=55.82 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=107.8
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe------CCCcEEEEeCCCCCccceeeeecccccceEEEE
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 281 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 281 (490)
+|.+.-.+-..-..+.-..+....+.+.+++|+|+.++... .|+.-.||-...++....+ ..+ ...+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCce
Confidence 66665544222222222223334678899999999776655 2444444533322221221 222 2378889
Q ss_pred EecCCCEEEEEECC-CeEEEEeCCCCeEEEEeecCCCC---CCCCCceEEEEcCCCcEEEEEcCCCcEEE---EECCCCc
Q 011256 282 VHATNKYFVTASLD-NTWCFYDLSSGICLTQVSDAGTD---GRPEGYTSAAFHPDGLILGTGTSEALVKI---WDVKSQA 354 (490)
Q Consensus 282 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~g~~dg~i~i---wd~~~~~ 354 (490)
|+|+|..+++.... ..+++.+-.....+..+...... .....|..+.|+|||..++... +|.|++ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 99998877777543 22233322221122211111000 1135799999999999887765 477777 4433443
Q ss_pred e-e---eeecC-CCCCeEEEEEcCCCCEEEEEeCCC---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEec
Q 011256 355 N-V---AKFDG-HVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 355 ~-~---~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
. + ..+.. ....+..+.|..++.++ ++..++ +...++..... ..+.......++..++-+++ -+++...
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcC
Confidence 1 1 11222 22346889999998865 444443 44444442221 11122222456667766653 3444444
Q ss_pred C
Q 011256 427 D 427 (490)
Q Consensus 427 d 427 (490)
+
T Consensus 559 ~ 559 (591)
T PRK13616 559 R 559 (591)
T ss_pred C
Confidence 4
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0048 Score=63.94 Aligned_cols=97 Identities=24% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccc
Q 011256 198 SKDVIATGGVDTNAVLFDRPSG-QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAE 276 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 276 (490)
.+..++.|++.|.+-..|.... .....=..-.++|++++|+.+|..++.|-.+|.|.+||...+ +..+.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence 4668899999999999887543 111222234678999999999999999999999999999886 555555555555
Q ss_pred eEEEE---EecCCCEEEEEECCCe
Q 011256 277 VQAVT---VHATNKYFVTASLDNT 297 (490)
Q Consensus 277 v~~l~---~~~~~~~l~s~~~dg~ 297 (490)
.+++- +..++..++++...|.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc
Confidence 55444 4445667888887776
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.28 E-value=0.00073 Score=40.25 Aligned_cols=38 Identities=37% Similarity=0.493 Sum_probs=33.3
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
.+...+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999996
No 390
>PHA02713 hypothetical protein; Provisional
Probab=97.28 E-value=0.013 Score=59.73 Aligned_cols=188 Identities=9% Similarity=0.116 Sum_probs=99.9
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCcEEEE--eccCccCEEEEEEeeCCCEEEEEeCCC-----cEEEEeCCCCCcc
Q 011256 198 SKDVIATGGVD------TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSEDGNY 264 (490)
Q Consensus 198 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~ 264 (490)
++.++++||.+ ..+..||..++.-... +.........+ .-+|.+.+.||.++ ++..||..++ .+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~-~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDD-KW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCC-eE
Confidence 56777777754 3477788766543211 11111111122 23778888888764 4788998763 34
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCC-----------------------eEEEEeCCCCeEEEEeecCCCCCCC
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----------------------TWCFYDLSSGICLTQVSDAGTDGRP 321 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~ 321 (490)
..+..+.........+. -++...+.||.++ .+..||..+......-.... . .
T Consensus 380 ~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~-r 454 (557)
T PHA02713 380 KMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--G-T 454 (557)
T ss_pred EECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc--c-c
Confidence 33333322211122222 2577777777653 47778888776543222111 0 0
Q ss_pred CCceEEEEcCCCcEEEEEcCCC------cEEEEECCC-Cc--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC---EEEE
Q 011256 322 EGYTSAAFHPDGLILGTGTSEA------LVKIWDVKS-QA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLW 389 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg------~i~iwd~~~-~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iw 389 (490)
.. .+++ .-++.+.++|+.++ .+..||..+ .+ .+..+.........+.+ +|++.++|+.++ +-.|
T Consensus 455 ~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 455 IR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred cc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 11 1222 23567777777542 467899886 32 33333322233333333 778888888776 7777
Q ss_pred ECCCCcce
Q 011256 390 DLRKLKNF 397 (490)
Q Consensus 390 d~~~~~~~ 397 (490)
|..+.+-.
T Consensus 531 d~~~~~W~ 538 (557)
T PHA02713 531 NVYTYEWN 538 (557)
T ss_pred Cccccccc
Confidence 77765543
No 391
>PRK13684 Ycf48-like protein; Provisional
Probab=97.28 E-value=0.18 Score=47.92 Aligned_cols=277 Identities=9% Similarity=0.070 Sum_probs=136.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec----cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
...+.+|.|....+-+++|. +|.|..= .+.|+.-.... .....+.++.|.++ ..+++ +..|.|.. ..+.+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T-~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLET-NDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEE-cCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCCC
Confidence 45789999986566666664 5544331 12232222111 12234777877643 33444 45554332 222233
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.+..+..-.........+.....+..+ .++..|.|..=+ ..|+.-..+.. .....+.++.+.|++.++++|. .
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~ 192 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGTAE-MATNVGAIYRTT-DGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-R 192 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCcce-eeeccceEEEEC-CCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-C
Confidence 343332110111112222222222233 334444443222 22332222221 1125678899999987776654 4
Q ss_pred CcEEE-EECCCCceeeee-cCCCCCeEEEEEcCCCCEEEEEeCCCEEEE-ECCCCcceeeeecC--CCCCCeeEEEEcCC
Q 011256 343 ALVKI-WDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLW-DLRKLKNFRSFESS--DSETPTNSVDFDHS 417 (490)
Q Consensus 343 g~i~i-wd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iw-d~~~~~~~~~~~~~--~~~~~i~~i~~s~~ 417 (490)
|.+.. +|- .++.-... ......++++.+.+++..++++. .|..+. ....+........+ .....+..+.+.++
T Consensus 193 G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 193 GNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred ceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 54433 221 22211112 23346789999999998877764 453334 23333322222211 11245778899998
Q ss_pred CCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 418 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 418 ~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
+..++++.....+.. ......|......... ......+.|..+++.+++ +..|.|.-|+=
T Consensus 271 ~~~~~~G~~G~v~~S-~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 271 GEIWAGGGNGTLLVS-KDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred CCEEEEcCCCeEEEe-CCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 887776655433433 3334566654322221 235777888777666554 56898877753
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.14 Score=45.63 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=123.3
Q ss_pred EEEecCCCC-EEEEEeCCCc-EEEEeCCCCcEEEEeccCccC--EEEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 011256 192 SLDIHYSKD-VIATGGVDTN-AVLFDRPSGQIVTTLSGHSKK--VTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG 262 (490)
Q Consensus 192 ~~~~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 262 (490)
.|.|+|... -++.+-.-|+ ..++|....+...++...++. --.=.|||||.+|+..-.| |.|-|||...
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-- 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-- 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc--
Confidence 566777533 4444444443 467787776655544322211 1112589999988876443 7899999874
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECC------------------CeEEEEeCCCCeEEEEeecCCCCCCCCCc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------------------NTWCFYDLSSGICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v 324 (490)
.+..+..+..|.-.-..+.|.+||..++.+... -.+.+.|..+|..+.+.... ..-+.-.+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~lSi 228 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQLSI 228 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhhcce
Confidence 346677777888888899999999998876431 12334444455544333221 11233567
Q ss_pred eEEEEcCCCcEEEEEcCCCc-----EEEEECCCCceeeeecC-------CCCCeEEEEEcCCCCEEEEEeCCC--EEEEE
Q 011256 325 TSAAFHPDGLILGTGTSEAL-----VKIWDVKSQANVAKFDG-------HVGAVTAISFSENGYYLATAAHDG--VKLWD 390 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd 390 (490)
..++..+||...+.+-..|. -.+=-...++.+.-+.- ....|-+|+.+.+..+++..+-.| ..+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 88888888877665543331 11111122333332221 223567788877766777666665 89999
Q ss_pred CCCCcceeeeec
Q 011256 391 LRKLKNFRSFES 402 (490)
Q Consensus 391 ~~~~~~~~~~~~ 402 (490)
..++..+..-..
T Consensus 309 a~tG~vv~~a~l 320 (366)
T COG3490 309 AATGAVVSEAAL 320 (366)
T ss_pred cCCCcEEecccc
Confidence 999887655443
No 393
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.1 Score=52.64 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=105.2
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee-eeecccccceEEEEEecCC
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK-HTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~ 286 (490)
--.|+||+. +|..+..+.-..+.+-.+.|+.+.. |++...||+++||++..... +.. ..+......|..+.+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~i-e~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFI-ESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhh-cccccccccccCceeEEEEecCc
Confidence 345888887 4777666654455788999986655 66778999999999865311 110 0111222334444444344
Q ss_pred CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC---cEEEEEc-CCCcEEEEECCCC-ceeeeecC
Q 011256 287 KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG---LILGTGT-SEALVKIWDVKSQ-ANVAKFDG 361 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~-~dg~i~iwd~~~~-~~~~~~~~ 361 (490)
- ++-..+|.+.+-+-............ +.......|-...+++ ..++-.. ..| ..++....+ .....+..
T Consensus 140 V--avlt~~g~v~~i~~~~~~~~~~~~di--P~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 140 V--AVLTVSGQVILINGVEEPKLRKMPDI--PYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW 214 (829)
T ss_pred e--EEEecCCcEEEEcCCCcchhhhCCCC--CCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC
Confidence 3 33334455444332222222222211 1111122333333332 1111111 111 111211111 11222332
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 362 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 362 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
..+.+..+..||+..+|+.-...| |.+-+....+....+....+ .+...++|.-+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND 271 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCC
Confidence 346788899999999999998888 88888887777777765543 333467776554
No 394
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.15 Score=45.58 Aligned_cols=200 Identities=17% Similarity=0.184 Sum_probs=118.6
Q ss_pred cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc
Q 011256 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 354 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 354 (490)
+-+..+.++ +++...+..+.-++++|+.+............. . ..-.|.-.|++..++.-|.-+.+.|+.+..
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---g--yaygv~vsGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---G--YAYGVYVSGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC---c--eEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence 445566665 678888888889999999877655444322111 2 223344467888888866667788886542
Q ss_pred ---eeeeecCCCCCeEEEEEcCCCCEEEEEeCC-CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEE
Q 011256 355 ---NVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRV 430 (490)
Q Consensus 355 ---~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v 430 (490)
....+....+.-..++.| |++-..+..+ |+.|-|+.......-+........+.++..+++.-+++.....+.+
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvli 237 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLI 237 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEE
Confidence 333344344444666774 5566666555 5999999887654444433334478888888888888888887777
Q ss_pred EEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 011256 431 YQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 487 (490)
-+.+.....+ ....+... ....++.+.. .+++......+..+-+-++.+...|
T Consensus 238 vd~s~~ssp~-~~gsyet~-~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 238 VDVSGPSSPT-VFGSYETS-NPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred EecCCCCCce-EeeccccC-Ccccccceec--ccceeeeeccccCceeEeccCCCCC
Confidence 7764333222 12222111 1112222233 4455555555666666666655444
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.06 E-value=0.43 Score=48.33 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=92.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccC--c--cCEEEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCccceee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH--S--KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~--~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 268 (490)
+..++.++.|+.+..+|..+|+.+-..... . ..+.+--..-++ .+++++. +|.|..+|..++...-...
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 356777888999999999999998765421 1 112111111134 4555432 6889888887763211111
Q ss_pred eeccc----------------------------ccceE-EEEEecCCCEEEEEECC-----C-----------eEEEEeC
Q 011256 269 TLKDH----------------------------TAEVQ-AVTVHATNKYFVTASLD-----N-----------TWCFYDL 303 (490)
Q Consensus 269 ~~~~h----------------------------~~~v~-~l~~~~~~~~l~s~~~d-----g-----------~i~iwd~ 303 (490)
..... ...++ .+++.|...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 11110 11122 33566666666655421 2 5777899
Q ss_pred CCCeEEEEeecCCCCCCC----CCceEEEEcCCCc---EEEEEcCCCcEEEEECCCCcee
Q 011256 304 SSGICLTQVSDAGTDGRP----EGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANV 356 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~ 356 (490)
++|+....+......... ....-+.+..+|. .++.++.+|.+++.|.++|+.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988777643222111 1223334445665 8889999999999999999876
No 396
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.05 E-value=0.21 Score=44.35 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=138.8
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.-..++-.|||..-+++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++....+...
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44677888999988888888888888888888776655555666777778888765554333 34445544432111111
Q ss_pred eecccccceEEEEEecCCCEEEEEECC---------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLD---------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
....-........|.+.|++-+++... +.|++|+...| ...+.++..|||..-++.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG---------------~gpyGi~atpdGsvwyas 206 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG---------------GGPYGICATPDGSVWYAS 206 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC---------------CCCcceEECCCCcEEEEe
Confidence 222344567888899999988887531 23444443221 455778999999988887
Q ss_pred cCCCcEEEEECCCCceeeee---cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 340 TSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
-.+..|-..|..++.. ..+ ......-..+--+|.|..-++....+ +.-||-.... -..+..........++..+
T Consensus 207 lagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD 284 (353)
T COG4257 207 LAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVD 284 (353)
T ss_pred ccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeec
Confidence 7788888888777622 122 22123345565677787777765555 8888876654 4555555555566777777
Q ss_pred CCCCEEE
Q 011256 416 HSGSYLA 422 (490)
Q Consensus 416 ~~~~~l~ 422 (490)
..++.-+
T Consensus 285 ~~grVW~ 291 (353)
T COG4257 285 RHGRVWL 291 (353)
T ss_pred cCCcEEe
Confidence 6666554
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0033 Score=65.13 Aligned_cols=103 Identities=20% Similarity=0.301 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC-CCC
Q 011256 332 DGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-ETP 408 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-~~~ 408 (490)
.+..++.|+..|.+...|+... .+...-..-.++|++++|+.+|..++.|-.+| |.+||+...+..+.+..+.+ ...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567899999999999998653 22222233467999999999999999999999 99999999988888776633 223
Q ss_pred eeEEEEcCCCCEEEEEecCeEEEEEe
Q 011256 409 TNSVDFDHSGSYLAVASADIRVYQVA 434 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~di~v~~~~ 434 (490)
+..+.+..++..++++...+.+|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gsf~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGSFWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCceEEEE
Confidence 44444555666677776668888764
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.01 E-value=0.09 Score=51.57 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=94.5
Q ss_pred ccCEEEEEEeeCCCE-EEEEe--CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC----CEEEEEECCCeEEEE
Q 011256 229 SKKVTSVKFVTEGDL-FLTGS--ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN----KYFVTASLDNTWCFY 301 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~-l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~l~s~~~dg~i~iw 301 (490)
-.+|..++|. ||+. +++.- .+|.+++=|- ..+.. -..|..+.|.|-+ ..+++.-....|.+|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 3568889997 5654 33332 2344433221 23333 3458999999853 367777778899999
Q ss_pred eCC-----CCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC--ceeeeecCCCCCeEEEEEcCC
Q 011256 302 DLS-----SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSEN 374 (490)
Q Consensus 302 d~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~ 374 (490)
.+. .++.+...........+--...+.|||...+|++-+....=.+++++.. .....+ ...+-|.|.+|.+|
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~D 166 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKD 166 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCc
Confidence 875 2222222211111111122356789999988888776655456666543 233334 35678999999999
Q ss_pred CCEEEEEeCCC--EEEEECCC
Q 011256 375 GYYLATAAHDG--VKLWDLRK 393 (490)
Q Consensus 375 ~~~l~~~~~d~--i~iwd~~~ 393 (490)
|..|+++-... -+|||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 99999887776 78998643
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.0014 Score=56.01 Aligned_cols=105 Identities=13% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE-EEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC
Q 011256 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS-AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV 363 (490)
Q Consensus 285 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 363 (490)
-+..+++|+.+|.|.+|.............. + ...+.+ +....++.+..++..+|.|+.|++.-++.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s---~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS---G-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc---c-cccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 3567899999999999987632211111111 0 122222 2223356788999999999999998888776666665
Q ss_pred -CCeEEEEEcCCCCEEEEE--eCCC-EEEEECCC
Q 011256 364 -GAVTAISFSENGYYLATA--AHDG-VKLWDLRK 393 (490)
Q Consensus 364 -~~i~~l~~s~~~~~l~~~--~~d~-i~iwd~~~ 393 (490)
.++..+..+..+.++..+ |.+. ++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 344444444444555554 4444 56666544
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.95 E-value=0.32 Score=44.99 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=77.0
Q ss_pred eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC-
Q 011256 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL- 303 (490)
Q Consensus 225 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~- 303 (490)
...-.+.+..+.-+++|.++++++.-....-|+... ..+.+.. ..-...|..|.|.|++...+.+ ..|.|++=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~-~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ-TTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC-ccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 344456788888899999888876655556776433 1222222 2245789999999998776654 8888888872
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee---cCCCCCeEEEEEcCCCCEEEE
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~ 380 (490)
........ ...........+..++|.+++.+.++|+. |.+ +.....|+.=... ..-...++.+.|.++.+-++.
T Consensus 216 ~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 216 DDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp TEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred CCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 22222211 11111112245788999999888887765 433 3344444433222 233457889999876666666
Q ss_pred EeCC
Q 011256 381 AAHD 384 (490)
Q Consensus 381 ~~~d 384 (490)
|..+
T Consensus 293 G~~G 296 (302)
T PF14870_consen 293 GQDG 296 (302)
T ss_dssp -STT
T ss_pred CCCc
Confidence 5443
No 401
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.94 E-value=0.42 Score=46.14 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=82.1
Q ss_pred CEEEEEEeeCCCEEEEEe-----------CCC-cEEEEeCCC-CCccceeeeecccccceEEEEEecCCCEEEEEECCCe
Q 011256 231 KVTSVKFVTEGDLFLTGS-----------ADK-TVRVWQGSE-DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT 297 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s-----------~dg-~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 297 (490)
....|+|.++|+++++-. ..+ .|.+++-.. .+.......+.........|++.+++ . ++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCeE
Confidence 456788888888766642 223 676665332 23333334444334456889999888 4 44444443
Q ss_pred EEEEeCCCC-----eEEEEeecCCCC--CCCCCceEEEEcCCCcEEEEEcCC-------------------CcEEEEECC
Q 011256 298 WCFYDLSSG-----ICLTQVSDAGTD--GRPEGYTSAAFHPDGLILGTGTSE-------------------ALVKIWDVK 351 (490)
Q Consensus 298 i~iwd~~~~-----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~d-------------------g~i~iwd~~ 351 (490)
+++.|.... +....+...... .+......+.|.|||.+.++-+.. |.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334454321 111111111111 112447789999999876654421 445666665
Q ss_pred CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 011256 352 SQANVAKFDGHVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 352 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
.++.. .+...-.....++|+++|.++++-..+
T Consensus 173 g~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 54432 222222345789999999988775544
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.084 Score=50.96 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=91.8
Q ss_pred CCcE-EEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCC--------EEEEEeCCCEEEEECCCCcc--eee-
Q 011256 332 DGLI-LGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY--------YLATAAHDGVKLWDLRKLKN--FRS- 399 (490)
Q Consensus 332 ~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~--------~l~~~~~d~i~iwd~~~~~~--~~~- 399 (490)
+.++ |..+.....++-.|+..|+.+..++-+.. |+-+.+.|+.+ .|+.-+..+|.-||.|-... +..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4444 44556667799999999999999987765 77788888643 34444444599999984332 111
Q ss_pred -eecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 400 -FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 400 -~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
...........|++-..+| ++++|+.+ |++|+- ........+++. ..+|..+..+.||++|+..+ +..+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr----i~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyL 494 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR----IGRRAKTALPGL--GDAIKHVDVTADGKWILATC-KTYL 494 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh----hhhhhhhccccc--CCceeeEEeeccCcEEEEec-ccEE
Confidence 1111123445666655555 66777766 999985 222233345554 67899999999999988766 5566
Q ss_pred EEecCC
Q 011256 477 RVFGLP 482 (490)
Q Consensus 477 ~iw~~~ 482 (490)
.+-++.
T Consensus 495 lLi~t~ 500 (644)
T KOG2395|consen 495 LLIDTL 500 (644)
T ss_pred EEEEEe
Confidence 665554
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.90 E-value=0.41 Score=45.39 Aligned_cols=238 Identities=17% Similarity=0.203 Sum_probs=112.4
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee----cccccceEEEEEecC---CCEEEEEEC-C-------
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFVTASL-D------- 295 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~~~---~~~l~s~~~-d------- 295 (490)
..++|+|.|+|++|++ ...|.|++++... .....+..+ .........++++|+ +.+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 5699999998332 211122222 234567899999994 333333322 1
Q ss_pred -CeEEEEeCCCC-------eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-------------cEEEEECCCCc
Q 011256 296 -NTWCFYDLSSG-------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-------------LVKIWDVKSQA 354 (490)
Q Consensus 296 -g~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-------------~i~iwd~~~~~ 354 (490)
..|.-|....+ +.+...... ..........+.|.|||.+.++.+..+ .|.-.+.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~ 158 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPD-TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS 158 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES--CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred ceeeEEEeccCCccccccceEEEEEeCC-CCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence 23444544433 111111111 011223456799999997777655433 33333322 11
Q ss_pred e-------------eeee-cCCCCCeEEEEEcCC-CCEEEEEeC-CC---EEEEECCCCcce------------------
Q 011256 355 N-------------VAKF-DGHVGAVTAISFSEN-GYYLATAAH-DG---VKLWDLRKLKNF------------------ 397 (490)
Q Consensus 355 ~-------------~~~~-~~~~~~i~~l~~s~~-~~~l~~~~~-d~---i~iwd~~~~~~~------------------ 397 (490)
. ...+ .++ .....++|+|. |.++++-.. +. |.+. ..+...
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECT
T ss_pred CCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcccc
Confidence 0 0001 112 23568899998 666554322 22 4332 222110
Q ss_pred ---------eeeecCCCCCCeeEEEEcC-------CCCEEEEEecCeEEEEEeecCC-cceEeeeecCCCCCcceEEEEE
Q 011256 398 ---------RSFESSDSETPTNSVDFDH-------SGSYLAVASADIRVYQVASVKA-DWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 398 ---------~~~~~~~~~~~i~~i~~s~-------~~~~l~~~~~di~v~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
..+.. .....+..+.|-. .|.+++..-..-+||.+..... .......+.. .....+..+++
T Consensus 236 ~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~r~~~v~~ 313 (331)
T PF07995_consen 236 APSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG-GFGGRPRDVAQ 313 (331)
T ss_dssp GSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT-TSSS-EEEEEE
T ss_pred ccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc-cCCCCceEEEE
Confidence 00000 1123455566643 3445555444445555543211 1111122211 12448999999
Q ss_pred cCCCCeEEEEeCCCcEE
Q 011256 461 GPDAKYIAVGSMDRNLR 477 (490)
Q Consensus 461 s~~~~~l~s~~~dg~v~ 477 (490)
.|||.+.++.+.+|.|+
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999988888899874
No 404
>PHA03098 kelch-like protein; Provisional
Probab=96.89 E-value=0.12 Score=52.77 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=93.8
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCcEEEEecc---CccCEEEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCCc
Q 011256 198 SKDVIATGGVDT------NAVLFDRPSGQIVTTLSG---HSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGN 263 (490)
Q Consensus 198 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~ 263 (490)
++.+++.||.++ .+..||..+++... +.. .......+ .-++.+++.||.+ ..+..||..+. .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGES-K 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCC-c
Confidence 466777777543 57788877665432 221 11111222 2367778888865 34677887663 3
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
+.....+...... .+++. -++..++.||.+ ..+..||..+.......... .. ... .++. ..++.+++
T Consensus 370 W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~-r~~-~~~~-~~~~~iyv 442 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS-HYG-GCAI-YHDGKIYV 442 (534)
T ss_pred eeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cc-ccC-ceEE-EECCEEEE
Confidence 3333222211111 11222 256677777632 45888998877654322111 01 111 1222 23567777
Q ss_pred EEcCCC--------cEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCc
Q 011256 338 TGTSEA--------LVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLK 395 (490)
Q Consensus 338 ~g~~dg--------~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~ 395 (490)
.|+.++ .+.+||..+++-.. .+.........+.+ ++.+++.|+.+ .+.+||..+..
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 776432 38889987764221 11111111122223 66777777654 27888877654
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.82 E-value=0.56 Score=49.00 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=53.9
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
-.|..|.++|+|.+|+..|..| |.|-.+... +.....+.+-...|.|=.+.-+..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~~~-~~----------------- 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDERFF-TS----------------- 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechhhc-cC-----------------
Confidence 3588889999999998888865 444444321 01111222223334443333222221 11
Q ss_pred EEeecCCCCCCCCCceEEEEcCC---CcEEEEEcCCCcEEEEECCCC
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~ 353 (490)
.....|..+.|||. +..|++-+.|+.+++||+...
T Consensus 144 ---------~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 ---------NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---------CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11245677888885 477888888888888888643
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.80 E-value=0.56 Score=45.48 Aligned_cols=147 Identities=10% Similarity=0.072 Sum_probs=82.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCcc-ceeeeecccccceEEEEEec----CCCEEEEEECCCeEEEEeCCCC--e------
Q 011256 241 GDLFLTGSADKTVRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHA----TNKYFVTASLDNTWCFYDLSSG--I------ 307 (490)
Q Consensus 241 ~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~~----~~~~l~s~~~dg~i~iwd~~~~--~------ 307 (490)
.+.+++||..|.++||+....+.. ..+..-..-..+|..+..-. .....++.=.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 458999999999999998553311 11111123456788777532 1222333345567777776211 1
Q ss_pred -EEEEeecCCCCCCCCCceEEEEcC----C-CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 308 -CLTQVSDAGTDGRPEGYTSAAFHP----D-GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 308 -~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
.+.....+... .....+++-| . ..++.+-+.||.+.+|+-+.-.-...+.. ---...+.|.+.-..|+++
T Consensus 117 ~~L~~~yeh~l~---~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 117 YQLELIYEHSLQ---RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred EEEEEEEEEecc---cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 11122211111 2233344433 2 36788889999999999665433333332 1122346677777788888
Q ss_pred eCCC-EEEEEC
Q 011256 382 AHDG-VKLWDL 391 (490)
Q Consensus 382 ~~d~-i~iwd~ 391 (490)
+.+. +..|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 7774 777764
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.78 E-value=0.37 Score=43.13 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=116.0
Q ss_pred EEEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 011256 232 VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
...+.|..+|.++-+.+.-| .|+.+|+.++... ....+. ..---..+... ++..+...-.++...+||..+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~-~~~~l~-~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL-QSVPLP-PRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE-EEEE-T-TT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE-EEEECC-ccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 45677877888888887766 6889999886321 112222 11122334444 3344444556889999999999998
Q ss_pred EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCC-----CCCeEEEEEcCCCCEEEEEeCC
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~l~~~~~d 384 (490)
..+... ..-..++ .|+..|+.......|+++|..+-+....+.-. -..++-+.|- +|...+-.-..
T Consensus 124 ~~~~y~------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t 194 (264)
T PF05096_consen 124 GTFPYP------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT 194 (264)
T ss_dssp EEEE-S------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred EEEecC------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence 888643 2334555 46666777666778999999887766665422 2245667775 56655555544
Q ss_pred C-EEEEECCCCcceeeeecC-------------CCCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 385 G-VKLWDLRKLKNFRSFESS-------------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 385 ~-i~iwd~~~~~~~~~~~~~-------------~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
. |...|..++.....+... ....-.+.|+++|....|++.+.. -++|.+
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV 258 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEV 258 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEE
Confidence 4 777888887765544321 113457999999999888888877 666665
No 408
>PRK10115 protease 2; Provisional
Probab=96.75 E-value=0.85 Score=47.91 Aligned_cols=193 Identities=9% Similarity=0.059 Sum_probs=101.8
Q ss_pred ceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC------Cc
Q 011256 276 EVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------AL 344 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~ 344 (490)
.+..+.++|++++|+.+... ..|++.|+.++..+..... ..-..++|.+|+..|+....+ ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-------~~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-------NVEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-------CcceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 46678889999988776332 3588889987753222110 111469999998766655432 36
Q ss_pred EEEEECCCC--ceeeeecCCCCCeE-EEEEcCCCCEEEEEeCC---C-EEEEECC--CCcceeeeecCCCCCCeeEEEEc
Q 011256 345 VKIWDVKSQ--ANVAKFDGHVGAVT-AISFSENGYYLATAAHD---G-VKLWDLR--KLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 345 i~iwd~~~~--~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~d---~-i~iwd~~--~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
|+.+++.++ +....+........ .+..+.++.+++..+.. + +.+++.. .+.....+. .. ......+. +
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~-~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RR-KDHEYSLD-H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CC-CCCEEEEE-e
Confidence 888888887 33334443333333 33445477776655443 2 8888853 233222222 21 12222222 2
Q ss_pred CCCCEEEEEecC---eEEEEEeec-CCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 416 HSGSYLAVASAD---IRVYQVASV-KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 416 ~~~~~l~~~~~d---i~v~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
..+.+.+....+ .+|+.++.. ...|..+.. +.....|..+.+. .+.++++...+|.-+++-++
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~---~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP---PRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEEC---CCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 233333333322 566655432 223433332 2113467778877 33556666667765555443
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.41 Score=43.04 Aligned_cols=205 Identities=11% Similarity=0.109 Sum_probs=122.8
Q ss_pred cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEEC
Q 011256 271 KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDV 350 (490)
Q Consensus 271 ~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 350 (490)
.+-...|.++.|+|+.+.|++......-.++=...|..+..+..... .....+.+..+|.+.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----SDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----CChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 34455699999999999999998888888888888999888875432 34566788888888888778888888877
Q ss_pred CCCceeeee----------cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeee---cCC-----CCCCeeE
Q 011256 351 KSQANVAKF----------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE---SSD-----SETPTNS 411 (490)
Q Consensus 351 ~~~~~~~~~----------~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~---~~~-----~~~~i~~ 411 (490)
..+..+..+ ...+.....++|.|.+..|+.+-+.. +.||............ .+. .-..+.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 654322211 11255788999999988888888776 6666554322110000 000 0234677
Q ss_pred EEEcCCCCEEEEEec-CeEEEEEeecCCcceEeeeecC---CCC-CcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 412 VDFDHSGSYLAVASA-DIRVYQVASVKADWNCIKTFPD---LSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 412 i~~s~~~~~l~~~~~-di~v~~~~~~~~~~~~~~~~~~---~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+.|++....|.+-|. +-.+..++........+.-..+ ..+ -...-.++..++|. |...|.-+..+.|.
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F~ 310 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRFT 310 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceecc
Confidence 888876555544444 4555555332221111111111 100 11234677776665 33344555444443
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.70 E-value=1.1 Score=47.40 Aligned_cols=197 Identities=11% Similarity=0.131 Sum_probs=116.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC--------EEEEEEee----------------CCCEEEEEeCCCcEE
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK--------VTSVKFVT----------------EGDLFLTGSADKTVR 254 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~----------------~~~~l~s~s~dg~i~ 254 (490)
+..++.++.++.|+-.|..+|+.+-++...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888899999999999988877533211 11233321 234788888999999
Q ss_pred EEeCCCCCccceeeeecccccceE-------------EEEEec--CCCEEEEEEC----------CCeEEEEeCCCCeEE
Q 011256 255 VWQGSEDGNYDCKHTLKDHTAEVQ-------------AVTVHA--TNKYFVTASL----------DNTWCFYDLSSGICL 309 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~~~ 309 (490)
-.|..++ +.+..+. ..+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+
T Consensus 274 ALDA~TG---k~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTG---KLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCC---CEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9998876 3443332 111110 011111 1345666643 688999999999998
Q ss_pred EEeecCCCC-------------CCCCCceEEEEcCCCcEEEEEc------------------CCCcEEEEECCCCceeee
Q 011256 310 TQVSDAGTD-------------GRPEGYTSAAFHPDGLILGTGT------------------SEALVKIWDVKSQANVAK 358 (490)
Q Consensus 310 ~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~g~------------------~dg~i~iwd~~~~~~~~~ 358 (490)
..+...... +....-..++++++..+++.+. ..+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 877532110 0001113445556555554432 134667778888888776
Q ss_pred ecCCCC---------CeEEEEEcC-CCC---EEEEEeCCC-EEEEECCCCcceee
Q 011256 359 FDGHVG---------AVTAISFSE-NGY---YLATAAHDG-VKLWDLRKLKNFRS 399 (490)
Q Consensus 359 ~~~~~~---------~i~~l~~s~-~~~---~l~~~~~d~-i~iwd~~~~~~~~~ 399 (490)
++.... ...-+.+.. +|+ .++.++.+| +.++|-++++.+..
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 653111 111122322 553 788888888 99999998886654
No 411
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.70 E-value=0.66 Score=44.92 Aligned_cols=151 Identities=13% Similarity=0.168 Sum_probs=86.6
Q ss_pred ceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCc-----cee
Q 011256 324 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK-----NFR 398 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~-----~~~ 398 (490)
...+...++|.++++|.....++-||-....=...-......++.+.|.+++.+++++..++ .++....+. ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~-l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGG-LYVSKGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCce-EEEecCCCCccccccee
Confidence 34456678888777776543334444322110111122345789999999998887775444 344433333 122
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
..........+..+.|.+++..+++|...+ ++......++|.....-... ......+.|.++++-+++| .+|.|.-
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~-v~~s~D~G~tW~~~~~~~~~--~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAGGSGI-LLRSTDGGKSWKRDKGADNI--AANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEECCCc-EEEeCCCCcceeEccccCCC--CcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 222211134588899998888877776653 33333445566665432222 4567899998777666655 6888765
Q ss_pred e
Q 011256 479 F 479 (490)
Q Consensus 479 w 479 (490)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 412
>PRK10115 protease 2; Provisional
Probab=96.65 E-value=1.1 Score=47.02 Aligned_cols=195 Identities=7% Similarity=0.020 Sum_probs=99.4
Q ss_pred CeEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC------CcEEEEe
Q 011256 189 GIVSLDIHYSKDVIATGGVD-----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQ 257 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd 257 (490)
.+..+.++|+|++|+.+.+. ..|++.|+.++..+...-.... ..++|.+|++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46778899999988876432 3588889988764322211211 469999999866655432 3577778
Q ss_pred CCCCCccceeeeecccccceE-EEEEecCCCEEEEEEC---CCeEEEEeCC--CCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQ-AVTVHATNKYFVTASL---DNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~---dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
+.++.. .....+........ .+..+.++++++..+. ++.+.+++.. .+.....+... . .....+. +.
T Consensus 206 lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~----~~~~~~~-~~ 278 (686)
T PRK10115 206 IGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRR-K----DHEYSLD-HY 278 (686)
T ss_pred CCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECC-C----CCEEEEE-eC
Confidence 776521 11122222222233 2233347777665443 3568888843 33322222211 1 1112222 33
Q ss_pred CCcEEEEEcC---CCcEEEEECCCCceeeeecCC-C-CCeEEEEEcCCCCEEEEEeCCC---EEEEECCC
Q 011256 332 DGLILGTGTS---EALVKIWDVKSQANVAKFDGH-V-GAVTAISFSENGYYLATAAHDG---VKLWDLRK 393 (490)
Q Consensus 332 ~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~ 393 (490)
.+.+++.... ...|...++........+..+ . ..|..+.+. .+.++++...++ +.++|+..
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~ 347 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT 347 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC
Confidence 3333333322 223444455421122233333 2 368888887 335555555565 67777643
No 413
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.60 E-value=1.3 Score=47.22 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=78.4
Q ss_pred CCceEEEEcC-CCcEEEEEcCCCcEEEEECCCC----c-eeeeecCC----------CCCeEEEEEcCCCCEEEEEeCCC
Q 011256 322 EGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ----A-NVAKFDGH----------VGAVTAISFSENGYYLATAAHDG 385 (490)
Q Consensus 322 ~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~----~-~~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~d~ 385 (490)
.+...++|+| +...||+....|...|||+... . ........ ......+.|.++-..|++++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 4567899999 5578999999999999999211 1 11111111 12345788998988999999888
Q ss_pred EEEEECCCCcceeeeecCCCCCCeeEEEEcCC--CCEEEEEecCeEEEEEee
Q 011256 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS--GSYLAVASADIRVYQVAS 435 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~--~~~l~~~~~di~v~~~~~ 435 (490)
+.++|+.+......+........|..+.-++. +..++..+..|..+++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 99999998766442333333567888888887 555666666676666644
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.59 E-value=0.0081 Score=37.98 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ 220 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 220 (490)
...|.+++|+|..++||.|..+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
No 415
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.0082 Score=51.39 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=65.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CcEEEEeccCccCEEEEE-EeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccc-
Q 011256 198 SKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVK-FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT- 274 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~- 274 (490)
-+.-+++|+.+|.|++|+..- +.....+......|.++- -..++.+..+++.||.|+.|++.-. +.+.....|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccC
Confidence 356789999999999998762 111112222223333332 2235558899999999999998765 4444455566
Q ss_pred cceEEEEEecCCCEEEEE--ECCCeEEEEeCCC
Q 011256 275 AEVQAVTVHATNKYFVTA--SLDNTWCFYDLSS 305 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~ 305 (490)
.++..+.....+.++.++ |.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 455555555555666666 6666666666653
No 416
>PHA03098 kelch-like protein; Provisional
Probab=96.52 E-value=0.36 Score=49.33 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=93.6
Q ss_pred eCCCEEEEEeCCC------cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCe
Q 011256 239 TEGDLFLTGSADK------TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGI 307 (490)
Q Consensus 239 ~~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 307 (490)
.++.+++.||.++ .+..||..+. .+.....+.........+ .-++..++.||.+ ..+..||..++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3666777777543 4677887663 222222222111112222 2257777778765 347788887766
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC------CcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
........ .+..-.+++ .-++.+++.|+.+ ..+..||+.+++-.. .+...... .++.. .++.+++
T Consensus 370 W~~~~~lp----~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv 442 (534)
T PHA03098 370 WREEPPLI----FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYV 442 (534)
T ss_pred eeeCCCcC----cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEE
Confidence 44322111 111111222 2356777777732 357889987653221 11111111 12222 2566666
Q ss_pred EEeCC--------C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-------eEEEEEeecCCcceEe
Q 011256 380 TAAHD--------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-------IRVYQVASVKADWNCI 443 (490)
Q Consensus 380 ~~~~d--------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-------i~v~~~~~~~~~~~~~ 443 (490)
.|+.+ . +.+||..+.+-...-...........+.+ ++.+++.|+.+ +.+|+ .....|..+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd--~~~~~W~~~ 518 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYD--DKTNTWTLF 518 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEe--CCCCEEEec
Confidence 66532 1 78888877543222111110111122222 56666666543 44444 344567666
Q ss_pred eeecC
Q 011256 444 KTFPD 448 (490)
Q Consensus 444 ~~~~~ 448 (490)
..++.
T Consensus 519 ~~~p~ 523 (534)
T PHA03098 519 CKFPK 523 (534)
T ss_pred CCCcc
Confidence 55443
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.47 E-value=0.91 Score=43.82 Aligned_cols=145 Identities=8% Similarity=0.121 Sum_probs=81.6
Q ss_pred CeEEEEecCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--EEEEeccCccCEEEEEEeeCCCEEEEEeCCCc
Q 011256 189 GIVSLDIHYSKDVIATGG-----------VDT-NAVLFDRPS--GQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 252 (490)
....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.........++|.++| +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456889999999887753 223 677776432 32 223343334456889998888 444 444443
Q ss_pred EEEEeCCCCC----cccee-eeecc----cccceEEEEEecCCCEEEEEECC-------------------CeEEEEeCC
Q 011256 253 VRVWQGSEDG----NYDCK-HTLKD----HTAEVQAVTVHATNKYFVTASLD-------------------NTWCFYDLS 304 (490)
Q Consensus 253 i~iwd~~~~~----~~~~~-~~~~~----h~~~v~~l~~~~~~~~l~s~~~d-------------------g~i~iwd~~ 304 (490)
.++.+.+... ..+.+ ..+.. +......+.|.|+|.+.++.+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344554322 11122 22322 23457789999999876655421 445555555
Q ss_pred CCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 305 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.+... .+.. +. .....++|+++|.++++-..
T Consensus 173 g~~~e-~~a~----G~-rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 173 GGKLR-VVAH----GF-QNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCeEE-EEec----Cc-CCCccceECCCCCEEEEccC
Confidence 54432 2211 11 34568999999988876443
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.43 E-value=0.54 Score=40.77 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=73.3
Q ss_pred CCCceEEEEcCCCcEEEEEcCC---------CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEE
Q 011256 321 PEGYTSAAFHPDGLILGTGTSE---------ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLW 389 (490)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iw 389 (490)
....+.-..+|+|++++-.-.| |.++.|-.. ..+..+...-+--+.++|+.+.+.+.....-. |.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3556777889999984432222 233333321 11222222223346788888777666554443 6667
Q ss_pred E--CCCCcc-----eeeeecCC--CCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 390 D--LRKLKN-----FRSFESSD--SETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 390 d--~~~~~~-----~~~~~~~~--~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
| ..++.. +..+.... ..-..-.++++.+|.+.++.-+..+|+.++. .++..+..+... ...|+|++|
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp--~tGK~L~eiklP--t~qitsccF 261 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP--TTGKILLEIKLP--TPQITSCCF 261 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC--CCCcEEEEEEcC--CCceEEEEe
Confidence 6 444322 21111100 0112344566777887777766677777654 345555555543 668999999
Q ss_pred cC
Q 011256 461 GP 462 (490)
Q Consensus 461 s~ 462 (490)
.-
T Consensus 262 gG 263 (310)
T KOG4499|consen 262 GG 263 (310)
T ss_pred cC
Confidence 53
No 419
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.42 E-value=0.89 Score=43.13 Aligned_cols=237 Identities=16% Similarity=0.208 Sum_probs=113.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE---EEEe----ccCccCEEEEEEeeC----CCEEEEEeCC--------
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTL----SGHSKKVTSVKFVTE----GDLFLTGSAD-------- 250 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~h~~~v~~l~~~~~----~~~l~s~s~d-------- 250 (490)
-++|+|.|+|+++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 478999999887775 5699999999 34433 3333 234566899999994 3333333321
Q ss_pred CcEEEEeCCCC-Cc---ccee-eeecc---cccceEEEEEecCCCEEEEEECCCe---EEEEeCCCCeEEEEeecCCC--
Q 011256 251 KTVRVWQGSED-GN---YDCK-HTLKD---HTAEVQAVTVHATNKYFVTASLDNT---WCFYDLSSGICLTQVSDAGT-- 317 (490)
Q Consensus 251 g~i~iwd~~~~-~~---~~~~-~~~~~---h~~~v~~l~~~~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~-- 317 (490)
..|.-|..... .. .+.+ ..+.. ....-..|.|.|+|.++++.+..+. ..-.+...++.+. +.....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilr-i~~dG~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILR-IDPDGSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEE-EETTSSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEE-ecccCcCC
Confidence 23444444332 00 1111 11111 2234567999999977666654332 0000001122211 111100
Q ss_pred -----------------CCCCCCceEEEEcCC-CcEEEEE-cCCCcEEEEECCCCc------------------------
Q 011256 318 -----------------DGRPEGYTSAAFHPD-GLILGTG-TSEALVKIWDVKSQA------------------------ 354 (490)
Q Consensus 318 -----------------~~~~~~v~~~~~~~~-~~~l~~g-~~dg~i~iwd~~~~~------------------------ 354 (490)
.++ .....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 001 22457899998 6655542 222222222222111
Q ss_pred -----eeeeecCCCCCeEEEEEcCC-------CCEEEEEeCCC-EEEEECCCCcceeeeec--CCCCCCeeEEEEcCCCC
Q 011256 355 -----NVAKFDGHVGAVTAISFSEN-------GYYLATAAHDG-VKLWDLRKLKNFRSFES--SDSETPTNSVDFDHSGS 419 (490)
Q Consensus 355 -----~~~~~~~~~~~i~~l~~s~~-------~~~l~~~~~d~-i~iwd~~~~~~~~~~~~--~~~~~~i~~i~~s~~~~ 419 (490)
++..+..| ..+..+.|... |.+|++....+ |....+.....+..... ......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 12222323 46677777643 44555555444 77777754432221111 22234789999999999
Q ss_pred EEEEEecCeEEE
Q 011256 420 YLAVASADIRVY 431 (490)
Q Consensus 420 ~l~~~~~di~v~ 431 (490)
+.++...+..||
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877666665
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.38 E-value=0.015 Score=36.71 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=29.6
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
...|.+++|+|...+||.|+.||.|.+|.+...
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 557999999999999999999999999999543
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=96.38 E-value=0.31 Score=48.88 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=91.2
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcEEEE--eccCccCEEEEEEeeCCCEEEEEeCC--CcEEEEeCCCCCccceee
Q 011256 198 SKDVIATGGVDT-----NAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD--KTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 198 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 268 (490)
++.++++||.++ .+..||..++..... +.........+ .-++.+.+.||.+ ..+..||...+ .+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n-~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDA-AWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCC-eEEECC
Confidence 455667777543 466788776543321 11111111122 2377777888764 35778886552 333333
Q ss_pred eecccccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
.+....... +++ .-+|...+.||.++ .+..||..+.......... .+..-.+++ .-++.+.+.| |.+
T Consensus 348 ~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~----~~r~~~~~~-~~~~~IYv~G---G~~ 417 (480)
T PHA02790 348 SLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY----YPHYKSCAL-VFGRRLFLVG---RNA 417 (480)
T ss_pred CCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC----CccccceEE-EECCEEEEEC---Cce
Confidence 332111111 222 22577778877653 4678888877654422211 011111222 2356777776 357
Q ss_pred EEEECCCCcee--eeecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCC
Q 011256 346 KIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKL 394 (490)
Q Consensus 346 ~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~ 394 (490)
.+||..+++=. ..+.........+.+ +|++.++|+.+ .+.+||..+.
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 78998765322 222211222222233 66777777643 1566666543
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.37 E-value=0.13 Score=52.18 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=72.1
Q ss_pred ceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec-CCCCCeEEEEEc--CCCCEEEEEeCCC-EEEEECC-------
Q 011256 324 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFS--ENGYYLATAAHDG-VKLWDLR------- 392 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s--~~~~~l~~~~~d~-i~iwd~~------- 392 (490)
+.-+.-+.-++.-++......+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.+-.. |.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444444455555555555689999999886443332 346789999885 4677776666665 8887432
Q ss_pred --CCcceeeeecCCC-CCCeeEEEEcCCCCEEEEEecCeEEEEE
Q 011256 393 --KLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQV 433 (490)
Q Consensus 393 --~~~~~~~~~~~~~-~~~i~~i~~s~~~~~l~~~~~di~v~~~ 433 (490)
....++.+....+ ..+|.+..|-++|.+++.+++.+.|++-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1123444443333 4689999999999888877777888863
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.9 Score=44.03 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=84.1
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC-------EEEEEECCCeEEEEeCCC-CeEEE
Q 011256 240 EGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-------YFVTASLDNTWCFYDLSS-GICLT 310 (490)
Q Consensus 240 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~s~~~dg~i~iwd~~~-~~~~~ 310 (490)
+..+|+ .|+....++-.|++.+ +.+.....|..- -+.|.|..+ .-++|-.+..|.-.|.+- |..+.
T Consensus 478 dssli~~dg~~~~kLykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 334333 3444455555666655 555566555543 456666432 233444455555555543 32222
Q ss_pred EeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 011256 311 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWD 390 (490)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd 390 (490)
..... .........|..-. ...++++|+..|.|++||--.-.....+.+....|..+..+.+|.++++.+...+.+-|
T Consensus 553 v~esK-dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d 630 (776)
T COG5167 553 VVESK-DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTD 630 (776)
T ss_pred eeeeh-hccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEe
Confidence 22111 00011122222222 34689999999999999954433344455666789999999999999998888888888
Q ss_pred CC
Q 011256 391 LR 392 (490)
Q Consensus 391 ~~ 392 (490)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 75
No 424
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.29 E-value=0.52 Score=46.27 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=70.9
Q ss_pred EEEEECCCCceeeeecC-CCCCeEEEEEcCCCCEEEEEeCC-CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 345 VKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d-~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
+.+-+-.++..+..... ....|+.+++...|. +-.++.. |+..|+..+.-...........+.|..+.-+|+++ |.
T Consensus 356 L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LW 433 (671)
T COG3292 356 LMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LW 433 (671)
T ss_pred EEEecCCCCcEEEEeeeccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EE
Confidence 33334444444443221 234577777777554 4444444 78888877722222222222256788888899998 77
Q ss_pred EEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 423 VASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 423 ~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.|+.++-+|.........+....-......+.|..+.+.|+|+.-+..+ +| |..|+-..
T Consensus 434 IGTs~Glvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~ 492 (671)
T COG3292 434 IGTSGGLVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQR 492 (671)
T ss_pred EeccCCeEecCccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeecccc
Confidence 7777766665422111111111111111234567788899998644333 33 56666544
No 425
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.27 E-value=0.8 Score=41.01 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=125.8
Q ss_pred EEEEeeCCC-EEEEEeCCCc-EEEEeCCCCCccceee-----eecccccceEEEEEecCCCEEEEEECC-----CeEEEE
Q 011256 234 SVKFVTEGD-LFLTGSADKT-VRVWQGSEDGNYDCKH-----TLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFY 301 (490)
Q Consensus 234 ~l~~~~~~~-~l~s~s~dg~-i~iwd~~~~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iw 301 (490)
.+.|+|.-. -++.+-.-|+ ..++|.........+. .+.+| =.|+|+|.+|...-.| |.|-+|
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEEE
Confidence 456666433 3455544454 4577777653322221 22334 3589999999887554 789999
Q ss_pred eCCCCe-EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC------------------CcEEEEECCCCceeeeec--
Q 011256 302 DLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE------------------ALVKIWDVKSQANVAKFD-- 360 (490)
Q Consensus 302 d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------------------g~i~iwd~~~~~~~~~~~-- 360 (490)
|.+.+- .+..+. .|.-....+.+.+||+.++++... -.+.+.|..+|..+.+..
T Consensus 146 d~r~~fqrvgE~~-----t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 146 DAREGFQRVGEFS-----THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred ecccccceecccc-----cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence 988442 222232 333556788999999999886420 123344444454443321
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeCCC------EEEEECCCCcceeeeecCCC-----CCCeeEEEEcCCCCEEEEEecC
Q 011256 361 --GHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLKNFRSFESSDS-----ETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 361 --~~~~~i~~l~~s~~~~~l~~~~~d~------i~iwd~~~~~~~~~~~~~~~-----~~~i~~i~~s~~~~~l~~~~~d 427 (490)
.+.-.|..++..+||..++.+-..| -.+=-.+.++.+..+..... ...|-+++.+.+..+++..+-.
T Consensus 221 ~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence 2345688899988888777664332 12222234444443333211 3457778887766666666554
Q ss_pred ---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 428 ---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 428 ---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
..+|+. .+...+...... ....+. +...-+++.+.+|.+.+++-..
T Consensus 301 GN~~vi~da----~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s~~~ 349 (366)
T COG3490 301 GNRAVIWDA----ATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYSRAA 349 (366)
T ss_pred CCeEEEEEc----CCCcEEeccccc----ccccce--eccCceEEecCCceEEeccccc
Confidence 677886 334433322111 122232 2333455566688888775443
No 426
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.26 E-value=0.86 Score=41.31 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=88.4
Q ss_pred CeEEEEecCCCCEEEEEe---CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe-CCCCCcc
Q 011256 189 GIVSLDIHYSKDVIATGG---VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ-GSEDGNY 264 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~ 264 (490)
.+.+.++++++..++... ....++++... +.....+.+ ..+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999776655 33345555433 222222233 3688889999988777666666667764 2222111
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEE---CCCeEEEEeCC---CC--eEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTAS---LDNTWCFYDLS---SG--ICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~---~dg~i~iwd~~---~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
........-...|..+.++|||..++... .++.|.+--+. .+ ..+...... .......+..+.|.+++.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEEE
Confidence 11111111122899999999999877665 35677766543 22 111000000 11123578999999999888
Q ss_pred EEEcCCCc
Q 011256 337 GTGTSEAL 344 (490)
Q Consensus 337 ~~g~~dg~ 344 (490)
+.+...+.
T Consensus 181 V~~~~~~~ 188 (253)
T PF10647_consen 181 VLGRSAGG 188 (253)
T ss_pred EEeCCCCC
Confidence 87765543
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.21 E-value=0.012 Score=59.97 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=101.0
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCC--CCcEE-----EEeccCccCEEEEEEee---CCCEEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRP--SGQIV-----TTLSGHSKKVTSVKFVT---EGDLFLTGSAD 250 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~-----~~~~~h~~~v~~l~~~~---~~~~l~s~s~d 250 (490)
+.++-.+++..+.|-... ..+. -.-|.+.||++. .|+.. +........+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 445556777777775321 1111 223678899854 34332 22223334455666655 55677888888
Q ss_pred CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc
Q 011256 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
+.|++.+.+.. ....+.+|...+..++|...|-.++. .++
T Consensus 205 ~~i~lL~~~ra----~~~l~rsHs~~~~d~a~~~~g~~~l~------------------------------------~lS 244 (1283)
T KOG1916|consen 205 GEIRLLNINRA----LRSLFRSHSQRVTDMAFFAEGVLKLA------------------------------------SLS 244 (1283)
T ss_pred CceeEeeechH----HHHHHHhcCCCcccHHHHhhchhhhe------------------------------------eeC
Confidence 99998877663 23455678888887776543321111 156
Q ss_pred CCCcEEEEEcCCCcEEEEEC-----CCCceeeeecCCC-CCeEEEEEcCC-------CC--EEEEEeCCC--EEEEECCC
Q 011256 331 PDGLILGTGTSEALVKIWDV-----KSQANVAKFDGHV-GAVTAISFSEN-------GY--YLATAAHDG--VKLWDLRK 393 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~-----~~~~~~~~~~~~~-~~i~~l~~s~~-------~~--~l~~~~~d~--i~iwd~~~ 393 (490)
|||..|+.+..||.+++|.+ ..-.++..++.|. ++-.|.-|+.+ ++ +++++++-+ +++|....
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 77777777777777666654 2334556666666 33333334332 22 345555544 99998887
Q ss_pred Ccce
Q 011256 394 LKNF 397 (490)
Q Consensus 394 ~~~~ 397 (490)
.+|.
T Consensus 325 w~Cl 328 (1283)
T KOG1916|consen 325 WQCL 328 (1283)
T ss_pred hhhh
Confidence 7776
No 428
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.18 E-value=0.75 Score=39.90 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=84.0
Q ss_pred cCEEEEEEeeCCCEEEEEeC-C---------CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEE-EECCCeE
Q 011256 230 KKVTSVKFVTEGDLFLTGSA-D---------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVT-ASLDNTW 298 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~-d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~i 298 (490)
...+.-..+|+|+++ .|.. | |.++.|-.... +..+...-.--+.++|+.+.+.|.. -+.+-.|
T Consensus 109 nR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQ-----VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred cccccCccCCCCcee-eeeeccccccccccccEEEEeccCCC-----ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 345555678899874 3332 2 34445533221 1111222233467888877665544 4556677
Q ss_pred EEEe--CCCCe-----EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 011256 299 CFYD--LSSGI-----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF 371 (490)
Q Consensus 299 ~iwd--~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 371 (490)
.-|| ..+|. .+..+......++ -..-.+++..+|++.++.-..|+|...|..+|+.+.+++-....|+|++|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 6677 55543 2333332211111 12234566778899999889999999999999999999888889999999
Q ss_pred cC
Q 011256 372 SE 373 (490)
Q Consensus 372 s~ 373 (490)
--
T Consensus 262 gG 263 (310)
T KOG4499|consen 262 GG 263 (310)
T ss_pred cC
Confidence 54
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.17 E-value=0.96 Score=41.01 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=87.9
Q ss_pred CEEEEEEeeCCCEEEEEe---CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe-CCCC
Q 011256 231 KVTSVKFVTEGDLFLTGS---ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD-LSSG 306 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd-~~~~ 306 (490)
.+.+.++++++..++... ....+.++.... .... .+. ...+..-.|.+++...+....+....++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~--~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRP--VLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--ccee--ecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688899999999776655 223445554332 1121 112 23677888999977777666666666663 3333
Q ss_pred eEE-EEeecCCCCCCCCCceEEEEcCCCcEEEEEc---CCCcEEEEECC---CC------ceeeeecCCCCCeEEEEEcC
Q 011256 307 ICL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVK---SQ------ANVAKFDGHVGAVTAISFSE 373 (490)
Q Consensus 307 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~---~~------~~~~~~~~~~~~i~~l~~s~ 373 (490)
... ..+..... ...|..+.++|||..++... .++.|.+--+. .+ ............++.+.|.+
T Consensus 99 ~~~~~~v~~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 99 TGEPVEVDWPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred cceeEEeccccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 322 22221111 12799999999998777655 34677766543 22 11111222346889999999
Q ss_pred CCCEEEEEeCCC
Q 011256 374 NGYYLATAAHDG 385 (490)
Q Consensus 374 ~~~~l~~~~~d~ 385 (490)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998887776654
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.17 E-value=0.72 Score=44.65 Aligned_cols=85 Identities=11% Similarity=0.218 Sum_probs=56.8
Q ss_pred ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC----------------C-C-
Q 011256 272 DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP----------------D-G- 333 (490)
Q Consensus 272 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------~-~- 333 (490)
.....+.+|..+|++++.++.+.-|.|.++|+.++..+...+.... ..+.-+.... . .
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd----Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD----AQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc----ceEEEEEeecccccccccccccCCCCcceE
Confidence 3445688999999999999988889999999999887766653311 1111111100 0 1
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeeec
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKFD 360 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~~ 360 (490)
-+++-+-.-|.|.||.+++|..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 133345668899999999988777664
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.01 E-value=0.2 Score=50.81 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc--CCCCEEEEEecC--eEEEE-----E
Q 011256 364 GAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD--HSGSYLAVASAD--IRVYQ-----V 433 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s--~~~~~l~~~~~d--i~v~~-----~ 433 (490)
..+.-+.-+.-++..++.+... +.|||.+.+........ .....|..+.|. |+|+.+++.+-. |.+|. +
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3445555555555555544444 99999998774443333 236788998885 577766655554 66653 2
Q ss_pred eecCCcceEeeeecCCCC-CcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 434 ASVKADWNCIKTFPDLSG-TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
......|..+..+....+ ..+|.+..|.++|.+++.+| +.+.|++-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 233445666655533222 25789999999998766554 56777764
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.11 Score=54.81 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=83.7
Q ss_pred CCceEEEEcCCCcEEEEEc--CCCcEEEEECCCCcee-----eee------cCCCCCeEEEEEcCC-CCEEEEEeCCC-E
Q 011256 322 EGYTSAAFHPDGLILGTGT--SEALVKIWDVKSQANV-----AKF------DGHVGAVTAISFSEN-GYYLATAAHDG-V 386 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~-----~~~------~~~~~~i~~l~~s~~-~~~l~~~~~d~-i 386 (490)
..+..+...+|+...++.. .+-.|..||+++-..- .-+ ........++.|+|. ....+++..|. |
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4456666677765555433 3447899998753211 111 112335567888886 23344555555 7
Q ss_pred EEEECCCCcc-eeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCC--CCCcceEEEEEcCC
Q 011256 387 KLWDLRKLKN-FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPD 463 (490)
Q Consensus 387 ~iwd~~~~~~-~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~ 463 (490)
++..+..... ...+.. ....++++|+|.|..+++|-.+..+-.+.. .......+... .....|.+++|-..
T Consensus 181 ~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P---~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP---SLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeec---ccceeecccCCCcCCCcceeEEEEecc
Confidence 7776654322 222222 567899999999999999999866655522 22222222221 12468999999877
Q ss_pred CCeEEE
Q 011256 464 AKYIAV 469 (490)
Q Consensus 464 ~~~l~s 469 (490)
..+|++
T Consensus 255 ~eflvv 260 (1405)
T KOG3630|consen 255 QEFLVV 260 (1405)
T ss_pred eeEEEE
Confidence 666655
No 433
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.75 E-value=0.91 Score=39.15 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=82.4
Q ss_pred CEEEEEECCCeEEEEeCCC--CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC---C---cEEEE-ECCC----C
Q 011256 287 KYFVTASLDNTWCFYDLSS--GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---A---LVKIW-DVKS----Q 353 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g---~i~iw-d~~~----~ 353 (490)
+.|+.+.....|.+|++.. ......+... +.|..+.++..|+++++--.+ . .+++| +.+. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 5555556778899999883 3344455432 678999999999999985322 2 56665 2111 1
Q ss_pred ceee-eec---------------------CCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcc-ee---eeec-----
Q 011256 354 ANVA-KFD---------------------GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKN-FR---SFES----- 402 (490)
Q Consensus 354 ~~~~-~~~---------------------~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~-~~---~~~~----- 402 (490)
.++. .+- +-..++.+++..|-.--|++|+.+.+.+|.+..... .. .+..
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~ 182 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLI 182 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhh
Confidence 1111 111 123467788888875566777777788887764332 11 1111
Q ss_pred -CCCCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 403 -SDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 403 -~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
+.....+..+++ .+.|+|..+.. ++|+.+
T Consensus 183 ~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 183 DHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred heecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 111223444555 36788888877 777765
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.16 Score=53.56 Aligned_cols=149 Identities=14% Similarity=0.055 Sum_probs=89.5
Q ss_pred ceEEEEEecCCCEEEEE--ECCCeEEEEeCCCCeEEEEeecC------CCCCCCCCceEEEEcCCC-cEEEEEcCCCcEE
Q 011256 276 EVQAVTVHATNKYFVTA--SLDNTWCFYDLSSGICLTQVSDA------GTDGRPEGYTSAAFHPDG-LILGTGTSEALVK 346 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~ 346 (490)
+|..+...+|+...++. +.+-.|..||+++-......... ..........++.|+|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55666666776554443 33447889998754322110000 011122445678888853 3455667788888
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC--CCCeeEEEEcCCCCEEEE
Q 011256 347 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s~~~~~l~~ 423 (490)
+..+........--......++++|+|.|+.++.|-.+| +.-|-.. ++....+..... ...|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 887754432222222345789999999999999999998 6666433 222222322211 467999999888888776
Q ss_pred Ee
Q 011256 424 AS 425 (490)
Q Consensus 424 ~~ 425 (490)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 43
No 435
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=95.59 E-value=3.1 Score=42.22 Aligned_cols=256 Identities=15% Similarity=0.188 Sum_probs=119.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccC-ccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccceeeeec
Q 011256 196 HYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGH-SKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLK 271 (490)
Q Consensus 196 ~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h-~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 271 (490)
..++..++.+..+|.++...+.... .....-+. .....++.+..+| .+|+.||.-|.=.++.+.. .....+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-SNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEES-ESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-CCcEEEEecc
Confidence 4456788889999999888765433 12222222 4455667766555 4788888655444444332 2334555554
Q ss_pred ccccceEEEEEecC----CC------EEEEEE---CCCeEEEEeCCCCeEEE--EeecCCCCCCCCCceEEEEcC-CCcE
Q 011256 272 DHTAEVQAVTVHAT----NK------YFVTAS---LDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAAFHP-DGLI 335 (490)
Q Consensus 272 ~h~~~v~~l~~~~~----~~------~l~s~~---~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~ 335 (490)
.-++|..+.+.+. .. .+++++ .+|.+++..-. -... ........+ ...+..+.... +..+
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G--i~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~ 373 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG--IGIEGLELASSELPG-VTGIWTLKLSSSDHSY 373 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES--BEEE--EEEEEEEST-EEEEEEE-SSSSSBSE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc--CCceeeeeeccCCCC-ceEEEEeeecCCCceE
Confidence 4578998888532 12 556654 46788887432 2222 111110100 12233333222 2456
Q ss_pred EEEEcCCCcEEEEECC---CCceeee-----ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCC
Q 011256 336 LGTGTSEALVKIWDVK---SQANVAK-----FDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~---~~~~~~~-----~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
|+.+..+. -+++.+. ....+.. +......+.+-.+. +..++=....+|++.+....+....+.... ..
T Consensus 374 lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~-~~ 449 (504)
T PF10433_consen 374 LVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPA-GS 449 (504)
T ss_dssp EEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TT-S-
T ss_pred EEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCC-CC
Confidence 66665544 3455543 2333322 22222234444443 556666677779999988777766665442 45
Q ss_pred CeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 408 PTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
.|.+.+... +..+++.+.. +..+.++............ .......|.|+...|
T Consensus 450 ~I~~a~~~~-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 450 IIVAASIND-PQVLVALSGGELVYFELDDNKISVSDNDET-ILELDNEISCLSIEP 503 (504)
T ss_dssp --SEEEESS-SEEEEEE-TTEEEEEEEETTEEEEEEE-----EE-SS-EEEEE---
T ss_pred eEEEEEECC-CEEEEEEeCCcEEEEEEECCceeeeeeccc-cccCCCceEEEEeCC
Confidence 666666653 3333333333 7777774322211111010 000256788887765
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.48 E-value=0.76 Score=47.28 Aligned_cols=111 Identities=16% Similarity=0.257 Sum_probs=71.9
Q ss_pred CeEEEEEcC--CCCEEEEEeCCC-EEEEECCC-------C-------------cceeeeecCCCCCCeeEEEEc--CCCC
Q 011256 365 AVTAISFSE--NGYYLATAAHDG-VKLWDLRK-------L-------------KNFRSFESSDSETPTNSVDFD--HSGS 419 (490)
Q Consensus 365 ~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~-------~-------------~~~~~~~~~~~~~~i~~i~~s--~~~~ 419 (490)
.|+.|.... +...|+.|.+|| |.+|.... . ++...+. .....+.++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcce
Confidence 455554433 456788888998 99996521 0 0111111 14578889998 7788
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC-----C-eEEEEeCCCcEEEecC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA-----K-YIAVGSMDRNLRVFGL 481 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~-~l~s~~~dg~v~iw~~ 481 (490)
+||++++. |.||-+........... .+.+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~---s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVP---SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEecccccccccc---ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888777 88887754322111111 22346678999997643 2 7888999999999888
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.46 E-value=2.1 Score=45.42 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=105.0
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc--EEEEEc-----------CCCcEEEEECC-CCceeeeec--C
Q 011256 298 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGT-----------SEALVKIWDVK-SQANVAKFD--G 361 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~-----------~dg~i~iwd~~-~~~~~~~~~--~ 361 (490)
|+++|..++..+..+..... .....+..+.|+.... ++++|. .+|.++.|++- .++.+.-+. .
T Consensus 855 I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 66777777766655543322 2223455566665332 344432 24557777753 344222221 1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc
Q 011256 362 HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 439 (490)
Q Consensus 362 ~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 439 (490)
-.+++. +..|...++.+|-.+.+++||+-+.+..+..........|..+.+ .+..+++|... +.++.++. .
T Consensus 934 ~~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~---~ 1006 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR---E 1006 (1205)
T ss_pred CCccce--EEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEec---C
Confidence 223343 455666677777766799999998877766655433455667666 46677777665 77666643 2
Q ss_pred ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.+.+..+....-...|+++.+- |...++.+..=|.+.+-.++..
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 3344444443335567777665 4456888888888888887654
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.35 E-value=0.97 Score=43.82 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=82.3
Q ss_pred EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-------cEEEEEcCCCcEEEEECCCC-ceeeeec-
Q 011256 290 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-------LILGTGTSEALVKIWDVKSQ-ANVAKFD- 360 (490)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~g~~dg~i~iwd~~~~-~~~~~~~- 360 (490)
..|+....++-.|++.|+.+...... ..+ -+.|.|+. ..-++|-++..|.-.|.+-. ..+....
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~------ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLK------DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecC------Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 34555667888899999988887643 233 56677743 12234555666766776643 2222211
Q ss_pred -C--CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEe
Q 011256 361 -G--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA 434 (490)
Q Consensus 361 -~--~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 434 (490)
. ......+..-.. .-++++++..| |++||--..+....++.. ...|..+..+.+|.++++.+.. +-+.++.
T Consensus 557 KdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred hhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1 112233333333 34788888888 999995433332333333 5678899999999999988888 6666653
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=95.34 E-value=1.2 Score=44.72 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=91.1
Q ss_pred CCCEEEEEECCC-----eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC--CcEEEEECCCCcee-
Q 011256 285 TNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--ALVKIWDVKSQANV- 356 (490)
Q Consensus 285 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~- 356 (490)
++..+++||.++ .+..||..++........... .... +++ .-++.+.++|+.+ ..+..||..+++-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 345556666542 466788887665443221111 1111 222 2467888888764 35788887655322
Q ss_pred -eeecCCCCCeEEEEEcCCCCEEEEEeCCC----EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEE
Q 011256 357 -AKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVY 431 (490)
Q Consensus 357 -~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~ 431 (490)
..+.........+.+ +|++.+.|+.++ +..||.++..-...-......... ++ ..-+|.+.+.|+ ...+|
T Consensus 346 ~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG-~~e~y 420 (480)
T PHA02790 346 MPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR-NAEFY 420 (480)
T ss_pred CCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC-ceEEe
Confidence 122111111122222 677777776542 778888765432211111101111 12 223455555554 45666
Q ss_pred EEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCC
Q 011256 432 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 484 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~~ 484 (490)
+.. ...|..+...... ......+.+ +|+..+.||.+ ..|..||...+
T Consensus 421 dp~--~~~W~~~~~m~~~--r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CES--SNTWTLIDDPIYP--RDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCC--CCcEeEcCCCCCC--ccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 653 4567766554322 112222222 67777888754 35777777654
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.78 Score=43.80 Aligned_cols=141 Identities=8% Similarity=0.035 Sum_probs=85.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 011256 240 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 319 (490)
Q Consensus 240 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 319 (490)
|.+..+.+...|.+.-|-+...+..-++..-....++|.+|.|++|++.+++--.+.+|.+++....+........ ...
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~-ck~ 110 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE-CKT 110 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH-hcc
Confidence 3333333444455666665443322222222345679999999999999999999999999998544333222111 112
Q ss_pred CCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 011256 320 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 383 (490)
....|....|..+ .-+|.-...| +-+|-.... ..++..+.|.-.|+...|+++.+.+..++.
T Consensus 111 k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 111 KNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred CcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2345788888866 3444444444 666655433 334455667788999999998766554443
No 441
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=95.16 E-value=5.9 Score=42.89 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=79.5
Q ss_pred cEEEEEc---------CCCcEEEEECCC-----Ccee-----eee--cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECC
Q 011256 334 LILGTGT---------SEALVKIWDVKS-----QANV-----AKF--DGHVGAVTAISFSENGYYLATAAHDGVKLWDLR 392 (490)
Q Consensus 334 ~~l~~g~---------~dg~i~iwd~~~-----~~~~-----~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~ 392 (490)
.+|++|+ ..|.+.|||+-. +++. +.+ +..+++|..++=- +| +|+++....|.||++.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEec
Confidence 4777764 248899999732 3221 111 2356777777632 44 5566655569999994
Q ss_pred CCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC--eEE
Q 011256 393 KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK--YIA 468 (490)
Q Consensus 393 ~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~ 468 (490)
....+.-.... .-++.-.....-+++|+.|.-- +.+..+.........+. .....-.+.++.|--||. +++
T Consensus 1125 r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~s---rd~~~l~v~s~EFLVdg~~L~fl 1199 (1366)
T KOG1896|consen 1125 RDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLS---RDFEPLNVYSTEFLVDGSNLSFL 1199 (1366)
T ss_pred cCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEee---cCCchhhceeeeeEEcCCeeEEE
Confidence 43322222222 2233333333345666666544 66665533222222221 111234577888877665 578
Q ss_pred EEeCCCcEEEecCCCCC
Q 011256 469 VGSMDRNLRVFGLPGND 485 (490)
Q Consensus 469 s~~~dg~v~iw~~~~~~ 485 (490)
++..||.|++|-.....
T Consensus 1200 vsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1200 VSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred EEcCCCcEEEEEeCCCC
Confidence 88999999998775543
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.69 Score=49.98 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=87.9
Q ss_pred eCCCcEEEEeCCCCcEEEEeccCccCEEEEEEe-e-------CCCEEEEEeCCCcEEEEeCCCCCccce------eeeec
Q 011256 206 GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV-T-------EGDLFLTGSADKTVRVWQGSEDGNYDC------KHTLK 271 (490)
Q Consensus 206 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~------~~~~~ 271 (490)
+.|+.+++|+.+++.....+.+-+..|..+..- | .=++++..+.--.|.++-+.-+..... ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 357889999999988888888888888877652 2 223333333344566664332111011 11222
Q ss_pred ccccceEEEEEecCCCEEEEEECCCeEEE--EeCCCCe----E-------------EEEeecCCCCCCCCCceEEEEcCC
Q 011256 272 DHTAEVQAVTVHATNKYFVTASLDNTWCF--YDLSSGI----C-------------LTQVSDAGTDGRPEGYTSAAFHPD 332 (490)
Q Consensus 272 ~h~~~v~~l~~~~~~~~l~s~~~dg~i~i--wd~~~~~----~-------------~~~~~~~~~~~~~~~v~~~~~~~~ 332 (490)
.....|+|+....+|+.|++| .||.|+- |....+- + +..+... ...+..+|..+.+...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~-~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV-PGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC-CCCCCCcceeeEeccc
Confidence 235578899877677766665 5554332 2222110 0 0011100 1244578999999998
Q ss_pred CcEEEEEcCCCcEEEEECCC
Q 011256 333 GLILGTGTSEALVKIWDVKS 352 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~ 352 (490)
..++.+-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 89999999999999999976
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.93 E-value=0.99 Score=47.23 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEECC
Q 011256 364 GAVTAISFSENGYYLATAAHDGVKLWDLR 392 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d~i~iwd~~ 392 (490)
-.|..|.++|+|.+|+..+..+|.|..+.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 46899999999999999999997777764
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.88 E-value=0.88 Score=35.91 Aligned_cols=103 Identities=13% Similarity=0.149 Sum_probs=66.0
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECCCC--------ceeeeecCCCCCeEEEEEcC-----CCCEEEEEeCCCEEEEECCC
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVKSQ--------ANVAKFDGHVGAVTAISFSE-----NGYYLATAAHDGVKLWDLRK 393 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~~~~~i~~l~~s~-----~~~~l~~~~~d~i~iwd~~~ 393 (490)
-.|......|++++..|.|.|++.... ..+..+. -...|++|+-.+ +...|+.|+...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 345555567888888999999987643 2333333 345677775433 35688999988899999988
Q ss_pred CcceeeeecCCCCCCeeEEEEcC----CCCEEEEEecC-eEEEEE
Q 011256 394 LKNFRSFESSDSETPTNSVDFDH----SGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 394 ~~~~~~~~~~~~~~~i~~i~~s~----~~~~l~~~~~d-i~v~~~ 433 (490)
...+..... ...++++.+-. ...++++|+.- +.-|+.
T Consensus 83 N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 83 NSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred CchhhhhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 766544444 34566666632 34556666554 555553
No 445
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.82 E-value=4.8 Score=40.78 Aligned_cols=219 Identities=11% Similarity=0.120 Sum_probs=96.7
Q ss_pred CeEEEEecCCC-CEEEEEeCCCc--EEEEeCCCCcEEEEeccCccCEEEEEEeeC----CC------EEEEEe---CCCc
Q 011256 189 GIVSLDIHYSK-DVIATGGVDTN--AVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD------LFLTGS---ADKT 252 (490)
Q Consensus 189 ~I~~~~~~~~~-~~l~~~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~------~l~s~s---~dg~ 252 (490)
..+++.+-.+| .+++.|+.-|. +.-|....-+.+..+. .-++|..+++.+. .. .|++++ .+|.
T Consensus 257 ~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gs 335 (504)
T PF10433_consen 257 IASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGS 335 (504)
T ss_dssp -ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-E
T ss_pred hhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCc
Confidence 34455555444 37777776444 4444544445555565 4568998888531 11 455554 4678
Q ss_pred EEEEeCCCCCccc-eeeeeccc--ccceEEEEEec-CCCEEEEEECCCeEEEEeCC---CCeEEEEeecCCCCCCCCCce
Q 011256 253 VRVWQGSEDGNYD-CKHTLKDH--TAEVQAVTVHA-TNKYFVTASLDNTWCFYDLS---SGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 253 i~iwd~~~~~~~~-~~~~~~~h--~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~ 325 (490)
+++..-.-+- . ........ -..++.+.... ++.+++.+..+.+ .++.+. ....+..............+.
T Consensus 336 L~~lr~Gi~~--~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~ 412 (504)
T PF10433_consen 336 LRILRNGIGI--EGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLA 412 (504)
T ss_dssp EEEEEESBEE--E--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEE
T ss_pred EEEEeccCCc--eeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeE
Confidence 8887532211 1 01111111 23344444322 2457776665544 455443 333332221111111112333
Q ss_pred EEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC-CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC
Q 011256 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 403 (490)
+..+. +..++=.+.. .|++.+...++....+.. ....|.+.+.+ +.+++.+..++ +.++.+............
T Consensus 413 ~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 487 (504)
T PF10433_consen 413 AGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDE 487 (504)
T ss_dssp EEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred EEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecc
Confidence 33333 3344444443 488888887777766643 33456666663 34454444444 888887765543222211
Q ss_pred ---CCCCCeeEEEEcC
Q 011256 404 ---DSETPTNSVDFDH 416 (490)
Q Consensus 404 ---~~~~~i~~i~~s~ 416 (490)
.....|.|+...|
T Consensus 488 ~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 488 TILELDNEISCLSIEP 503 (504)
T ss_dssp --EE-SS-EEEEE---
T ss_pred ccccCCCceEEEEeCC
Confidence 1256778877765
No 446
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.78 E-value=2 Score=44.33 Aligned_cols=148 Identities=8% Similarity=0.059 Sum_probs=90.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEE------EEec----------------cCccCEEEEEEee--CCCEEEEEeCCCcEE
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIV------TTLS----------------GHSKKVTSVKFVT--EGDLFLTGSADKTVR 254 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~------~~~~----------------~h~~~v~~l~~~~--~~~~l~s~s~dg~i~ 254 (490)
+++++++. .+.|.||+...-... ..+. .....|+.+.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777755 678999986432110 0110 0112355554433 445899999999999
Q ss_pred EEeCCC-------C----------CccceeeeecccccceEEEEEe--cCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 011256 255 VWQGSE-------D----------GNYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 315 (490)
Q Consensus 255 iwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 315 (490)
+|.++. . ...++...+. -...+++++++ ...++||+++....|.||-............
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~- 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP- 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc-
Confidence 996421 0 0011222222 34579999999 7788899988888888876544211111100
Q ss_pred CCCCCCCCceEEEEcCCC---c---EEEEEcCCCcEEEEEC
Q 011256 316 GTDGRPEGYTSAAFHPDG---L---ILGTGTSEALVKIWDV 350 (490)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~---~---~l~~g~~dg~i~iwd~ 350 (490)
...+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 206 -s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 -SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11244678899997743 2 7788888999999887
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.77 E-value=0.059 Score=55.21 Aligned_cols=184 Identities=16% Similarity=0.217 Sum_probs=99.9
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCC--CCeEEEEeecCCCCCCCCCceE
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLS--SGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
.+.|++-+....- .....+++..+.|-.+.|-... ..+. -.-|.+.+||+. .|+....+...........+.-
T Consensus 110 ~~~vrvaN~~~sm--~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSM--RHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchh--HHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcce
Confidence 4567777655431 1113345677788888874322 1121 233678888875 3433222221111111133344
Q ss_pred EEEcC---CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEE-----------EEcCCCCEEEEEeCCC-EEEE--
Q 011256 327 AAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAI-----------SFSENGYYLATAAHDG-VKLW-- 389 (490)
Q Consensus 327 ~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l-----------~~s~~~~~l~~~~~d~-i~iw-- 389 (490)
+.|.| +..++.++..++.|++....+... ..+.+|...++.+ ..+|||..|+..+.|| ++.|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55554 667788888889988877654322 3334455444333 3689999999999887 5555
Q ss_pred ---ECCCCcceeeeecCCCCCCeeEEEEcCCC---------CEEEEEecC---eEEEEEeecCCcceEe
Q 011256 390 ---DLRKLKNFRSFESSDSETPTNSVDFDHSG---------SYLAVASAD---IRVYQVASVKADWNCI 443 (490)
Q Consensus 390 ---d~~~~~~~~~~~~~~~~~~i~~i~~s~~~---------~~l~~~~~d---i~v~~~~~~~~~~~~~ 443 (490)
+.+...+...++.+.. .+-.|..|+... .++++++.- +++|.- ..|.|+
T Consensus 265 yi~g~~~~rclhewkphd~-~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~----a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDK-HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE----APWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCC-CCceeeeeccccccCCccceeEEEEecccCCcceeEeec----cchhhh
Confidence 5555666777776652 333333343321 223333332 778875 567666
No 448
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.72 E-value=4.5 Score=39.37 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=86.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc-----EEEEeccCccCEEEEEEee-----CCCEEEEEeCCCcEEEEeCCCCCc-----
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQ-----IVTTLSGHSKKVTSVKFVT-----EGDLFLTGSADKTVRVWQGSEDGN----- 263 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~----- 263 (490)
.+.|++|+..|.++||+...+. ++...+ -..+|..+..-+ +...||+ =.-..+.||.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4599999999999999875432 222222 346788776532 2224444 4456788887732211
Q ss_pred -cceeeeeccccc--ceEEEEEec----C-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 264 -YDCKHTLKDHTA--EVQAVTVHA----T-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 264 -~~~~~~~~~h~~--~v~~l~~~~----~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
.-.+..+..|.- ....+.+-| . ..++.+-+.||.+.+|+-+.-.....+... --...+.+.+.-..
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~------llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF------LLPGPLCYCPRTDS 188 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC------CCCcCeEEeecCCE
Confidence 112222223332 233333333 2 357888899999999997765544444321 22345677887788
Q ss_pred EEEEcCCCcEEEEEC
Q 011256 336 LGTGTSEALVKIWDV 350 (490)
Q Consensus 336 l~~g~~dg~i~iwd~ 350 (490)
|++++.+..+..|..
T Consensus 189 fvt~sss~~l~~Yky 203 (418)
T PF14727_consen 189 FVTASSSWTLECYKY 203 (418)
T ss_pred EEEecCceeEEEecH
Confidence 899888888888865
No 449
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.70 E-value=7 Score=41.48 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=71.7
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC---CCceEEEEcC----------------CCcEEEEEcCCCcEE
Q 011256 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP---EGYTSAAFHP----------------DGLILGTGTSEALVK 346 (490)
Q Consensus 286 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~----------------~~~~l~~g~~dg~i~ 346 (490)
+..++.++.++.|.-.|..+|+.+..+......... .....+.+.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777788888999999999888877643211100 0011222221 234788889999999
Q ss_pred EEECCCCceeeeecCCCCCe-------------EEEEEcC--CCCEEEEEeC----------CC-EEEEECCCCcceeee
Q 011256 347 IWDVKSQANVAKFDGHVGAV-------------TAISFSE--NGYYLATAAH----------DG-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~i-------------~~l~~s~--~~~~l~~~~~----------d~-i~iwd~~~~~~~~~~ 400 (490)
-.|.++|+.+..+.. .+.| ..+.-.| .+..+++|+. +| |+-+|.++++....+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876632 1111 0111122 1335555532 45 999999999987766
Q ss_pred ec
Q 011256 401 ES 402 (490)
Q Consensus 401 ~~ 402 (490)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.56 E-value=1.4 Score=39.30 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=79.0
Q ss_pred EEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC-C--CcEEEEeCCC-C--CccceeeeecccccceEEEEEec
Q 011256 211 AVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-D--KTVRVWQGSE-D--GNYDCKHTLKDHTAEVQAVTVHA 284 (490)
Q Consensus 211 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-d--g~i~iwd~~~-~--~~~~~~~~~~~h~~~v~~l~~~~ 284 (490)
-.+||+.+++....-....--..+-.|.+||++|.+|+. + ..+++++... . ..+......-.....--....-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888776553321112222233356789999999875 2 3578887544 1 11111100001111222334457
Q ss_pred CCCEEEEEECCC-eEEEEeCCCC-eEEEE--eecC-CCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee
Q 011256 285 TNKYFVTASLDN-TWCFYDLSSG-ICLTQ--VSDA-GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 359 (490)
Q Consensus 285 ~~~~l~s~~~dg-~i~iwd~~~~-~~~~~--~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 359 (490)
||+.|+.|+.+. +..+|.-... ..... +... .......-...+.+.|+|++|+.+..++ .|||..+++.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 899999988764 3455554221 11111 1100 0011123345778899999999988754 46788888776766
Q ss_pred cC
Q 011256 360 DG 361 (490)
Q Consensus 360 ~~ 361 (490)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=1.5 Score=41.99 Aligned_cols=138 Identities=15% Similarity=0.103 Sum_probs=83.4
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc--ee
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FR 398 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~ 398 (490)
+.+-|...++.+++.. .|.+.=|-.+.. -++..-....++|.++.|++|.+.+++--.+. |.+++....+. ..
T Consensus 26 ngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 3444444344444433 333444544321 22222233567999999999999999998887 98888743332 22
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEE
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIA 468 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 468 (490)
..........|....|+.+....++....+.+|...........+.+. ...|.-..|.++.+.+.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~-----~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSH-----NLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhc-----ccCccEEEEccccceEe
Confidence 222222245689999998866666666669999886555444444332 44677777777776543
No 452
>PLN02153 epithiospecifier protein
Probab=94.54 E-value=4.5 Score=38.58 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCcEEEEeccC--cc-----CEEEEEEeeCCCEEEEEeCC-----CcEEEEeC
Q 011256 198 SKDVIATGGVD-------TNAVLFDRPSGQIVTTLSGH--SK-----KVTSVKFVTEGDLFLTGSAD-----KTVRVWQG 258 (490)
Q Consensus 198 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~h--~~-----~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~ 258 (490)
++.+++.|+.+ ..+.+||..+.+-.. +... .. ....+.+ ++.+++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45677777653 357888887654332 1111 00 1122222 56677777753 24778887
Q ss_pred CCCCccceeeeecc---cccceEEEEEecCCCEEEEEECC-----------CeEEEEeCCCCeEEEEeecCCCCCCCCCc
Q 011256 259 SEDGNYDCKHTLKD---HTAEVQAVTVHATNKYFVTASLD-----------NTWCFYDLSSGICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 259 ~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v 324 (490)
.+. .+..+..+.. ........+..-+++.++.|+.+ ..+.+||..+...................
T Consensus 109 ~t~-~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~ 187 (341)
T PLN02153 109 VKN-EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187 (341)
T ss_pred CCC-EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc
Confidence 663 3333222210 01111111122356667777653 24778898877654322110000001111
Q ss_pred eEEEEcCCCcEEEEEcCC-------------CcEEEEECCCCc
Q 011256 325 TSAAFHPDGLILGTGTSE-------------ALVKIWDVKSQA 354 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~d-------------g~i~iwd~~~~~ 354 (490)
+++. -++++++.|+.+ ..|.+||+.+.+
T Consensus 188 -~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 188 -GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred -eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 2222 356666665432 358889987764
No 453
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=2.5 Score=36.13 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=93.4
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCccceeeeecccc
Q 011256 198 SKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274 (490)
Q Consensus 198 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 274 (490)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-|+.+ .-.-.+|.-.++|.++- +++..+. ..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~-y~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFS-YE 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhcccc-cC
Confidence 4556665553 3469999999988876544221112111111123322 23346788888887664 4444433 22
Q ss_pred cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc
Q 011256 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 354 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 354 (490)
+.=+.++ .++..++.++...++..-|.++......+........-..++.+.|- ||.+.+-.-.+..|...|..+|+
T Consensus 131 GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 131 GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 3334444 35666777766667777776654433332211000001222333332 45555555555566666777777
Q ss_pred eeeeec------------CCCCCeEEEEEcCCC-CEEEEE
Q 011256 355 NVAKFD------------GHVGAVTAISFSENG-YYLATA 381 (490)
Q Consensus 355 ~~~~~~------------~~~~~i~~l~~s~~~-~~l~~~ 381 (490)
.+..+. .+..-.+.|++.|++ +++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 665542 234467889999986 455554
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.47 E-value=4.2 Score=38.52 Aligned_cols=150 Identities=16% Similarity=0.268 Sum_probs=87.3
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCc------EEEEeCCCCC----ccce--eeeeccccc--------ceEEEEEecCCCEE
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKT------VRVWQGSEDG----NYDC--KHTLKDHTA--------EVQAVTVHATNKYF 289 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~------i~iwd~~~~~----~~~~--~~~~~~h~~--------~v~~l~~~~~~~~l 289 (490)
+.++.+.+.+++..+++.+.+|. +..+++.... .... ...+..-.+ ...+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45777888866666777777777 5555544310 0011 111111111 34478887788888
Q ss_pred EEEECC------CeEEEEeCCCCeEEEEeecCC----------CCCCCCCceEEEEcCCCcEEEEEcC-----CC--c--
Q 011256 290 VTASLD------NTWCFYDLSSGICLTQVSDAG----------TDGRPEGYTSAAFHPDGLILGTGTS-----EA--L-- 344 (490)
Q Consensus 290 ~s~~~d------g~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~g~~-----dg--~-- 344 (490)
++.-.+ ..|..++.. |.....+.... .......+.+++++|+|+.|+++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877777 788889877 66555442111 1234467899999999996665433 22 1
Q ss_pred -----EEE--EECCC-Cceeee----ecC-----CCCCeEEEEEcCCCCEEEE
Q 011256 345 -----VKI--WDVKS-QANVAK----FDG-----HVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 345 -----i~i--wd~~~-~~~~~~----~~~-----~~~~i~~l~~s~~~~~l~~ 380 (490)
+++ ||..+ +..... +.. ....|..+.+.+++.+|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 45444 222222 222 3457888888888887765
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=94.37 E-value=4.8 Score=38.22 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=82.9
Q ss_pred ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC
Q 011256 274 TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 274 ~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 353 (490)
...+.++.+.|++.+++++ ..|.+..-.-..++....... .....++++.+.+++.++++|. .|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEec-CCEEEEccCCCC
Confidence 4578899999987666554 445544321122222222221 1226788999999998877764 576643233333
Q ss_pred ceeeeecC----CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeec-CCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 354 ANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 354 ~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
..-..... ....+..+.+.+++..++++ .+|..+.....++....... .........+.|..++..+++|...
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 32221111 12357889999888766655 45544455454444333322 1112357788888777777777655
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.34 E-value=3.1 Score=35.95 Aligned_cols=144 Identities=23% Similarity=0.267 Sum_probs=82.4
Q ss_pred cEEEEEcCCCcEEEEECCC--CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-------EEEE-ECCCC----cce--
Q 011256 334 LILGTGTSEALVKIWDVKS--QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-------VKLW-DLRKL----KNF-- 397 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-------i~iw-d~~~~----~~~-- 397 (490)
..|+.+...+.|.+|++.. .....+|.. -+.|..+.++..|.||++--.+. +++| +.+.. .++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3444446677899999983 345556653 47899999999999999965432 4554 22211 111
Q ss_pred -------------------eeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcce--Eeeee----cCCCC
Q 011256 398 -------------------RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWN--CIKTF----PDLSG 451 (490)
Q Consensus 398 -------------------~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~--~~~~~----~~~~~ 451 (490)
..++.+- ..++.+++..|-..-|++|+.+ +.+|.+........ ....| -.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111111 3467788888865556666666 99998743222110 01111 11111
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.-.+..+++. +.|+|..+ +-.++++.+.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2234556663 45888776 6678887764
No 457
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.33 E-value=6.4 Score=39.48 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccc-cceEEEEEecC
Q 011256 207 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHAT 285 (490)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~ 285 (490)
..+...++|. .|.....+.........+...++|.+++..+ +.+..+|+... ......+.... ..=..+...|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~--v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK--VIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC--EEEeeecCCcccccccccEECCC
Confidence 3455666665 3555444432222211166678888776555 67888887642 11112222210 11134566788
Q ss_pred CCEEEEEEC-------------CCeEEEEeCCCCeEEEEeecCCCC--------------------CCC--CCceEEEEc
Q 011256 286 NKYFVTASL-------------DNTWCFYDLSSGICLTQVSDAGTD--------------------GRP--EGYTSAAFH 330 (490)
Q Consensus 286 ~~~l~s~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~--------------------~~~--~~v~~~~~~ 330 (490)
|++|+.+.. .-.|..+| .+|+.+..+...... ... -.+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 998888772 12366667 777776664422110 000 246789998
Q ss_pred C-CCcEEEEEcCCCcEEEEECCCCceeeeecCC
Q 011256 331 P-DGLILGTGTSEALVKIWDVKSQANVAKFDGH 362 (490)
Q Consensus 331 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 362 (490)
+ ++.+++++-.-..|...|.++++....+-.+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 8 6677777666668999998888877666543
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.16 E-value=0.2 Score=47.55 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=97.8
Q ss_pred EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeeccccc----ceE-EEEEecCCCEEEEEECCCeE
Q 011256 224 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA----EVQ-AVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 224 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~-~l~~~~~~~~l~s~~~dg~i 298 (490)
.+......|..+-..|||+.|..-+. .++.|+++.... ++.........+ .|+ .+..-..|..+++++.||.|
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 34445566788889999997776655 678899886632 111111111111 122 12222346678888899988
Q ss_pred EEE-eCCCCeE--EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC
Q 011256 299 CFY-DLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 299 ~iw-d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 375 (490)
.-| |.+.+.. ......... .+..+..+.-..+.+-+++-+..|++..+.....+.+. +..--..+.-+++||++
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred eeeeeeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCccc
Confidence 776 5443321 111111101 11333333333344667777888888887654444332 22223366788999999
Q ss_pred CEEEEEeCCCEEEEECCCCcce
Q 011256 376 YYLATAAHDGVKLWDLRKLKNF 397 (490)
Q Consensus 376 ~~l~~~~~d~i~iwd~~~~~~~ 397 (490)
.++++-..++++++.+.+..+.
T Consensus 370 ~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 370 AYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred chheeecCCceEEEEecCCCCC
Confidence 9999887777999988876543
No 459
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.87 E-value=5.1 Score=36.63 Aligned_cols=213 Identities=14% Similarity=0.133 Sum_probs=118.0
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCC-------CCcEEEEecc-----CccCEEEEEEeeCCC------------EEE
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRP-------SGQIVTTLSG-----HSKKVTSVKFVTEGD------------LFL 245 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~-----h~~~v~~l~~~~~~~------------~l~ 245 (490)
-+-|+++|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3679999999888888888999999986 1223334432 123567777764222 367
Q ss_pred EEeCCCcEEEEeCCCCCcc--ceeeeec-ccccce-EEEEEecC--CCEEEEEE-CCCeEEEEeCCCCeEEE--EeecCC
Q 011256 246 TGSADKTVRVWQGSEDGNY--DCKHTLK-DHTAEV-QAVTVHAT--NKYFVTAS-LDNTWCFYDLSSGICLT--QVSDAG 316 (490)
Q Consensus 246 s~s~dg~i~iwd~~~~~~~--~~~~~~~-~h~~~v-~~l~~~~~--~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~~~~ 316 (490)
.+++||+|.-|...-+... .....+. .....| ..+++... +++|..+. ..++|-+||-.=..... .+....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 8899999999985443210 1111221 112233 34555433 45665554 57889999854322110 011100
Q ss_pred CCCCCCC--c---------eEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcC------CCCE
Q 011256 317 TDGRPEG--Y---------TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSE------NGYY 377 (490)
Q Consensus 317 ~~~~~~~--v---------~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~------~~~~ 377 (490)
....-.+ | +-..-.+++..=+.|..-|.|-+||+ .+..++.+. +.-..-+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0000011 1 11111112222222334578999997 467777663 2233456777765 4667
Q ss_pred EEEEeCCC-EEEEECCCCcceeeeecC
Q 011256 378 LATAAHDG-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~~~~~~~~~~~ 403 (490)
|+---.|| |..||..++..+-.+...
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCC
Confidence 77666677 999999988776665543
No 460
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.81 E-value=5.5 Score=36.84 Aligned_cols=170 Identities=9% Similarity=0.118 Sum_probs=94.6
Q ss_pred eEEEEeCCCCeEEEEeecCCCCC-CCCCceEEEEcCCC-----cEEEEE-cCCCcEEEEECCCCceeeeecC--------
Q 011256 297 TWCFYDLSSGICLTQVSDAGTDG-RPEGYTSAAFHPDG-----LILGTG-TSEALVKIWDVKSQANVAKFDG-------- 361 (490)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-----~~l~~g-~~dg~i~iwd~~~~~~~~~~~~-------- 361 (490)
.|.+||+.+++.++.+....... ..+.+..+.+.... .+++.+ ...+.|.++|+.+++.-+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67889999999888776543222 24567778777622 233333 3446799999998865444321
Q ss_pred -----------CCCCeEEEEEcC---CCCEEEEEeCCCEEEEECCC-----Ccc---------eeeeecCCCCCCeeEEE
Q 011256 362 -----------HVGAVTAISFSE---NGYYLATAAHDGVKLWDLRK-----LKN---------FRSFESSDSETPTNSVD 413 (490)
Q Consensus 362 -----------~~~~i~~l~~s~---~~~~l~~~~~d~i~iwd~~~-----~~~---------~~~~~~~~~~~~i~~i~ 413 (490)
....+..++.+| +|++|.-+.-.+-++|.+.+ ... +..+... ......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k--~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDK--GSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecccc--CCCCceEE
Confidence 123477777766 67788888777666665432 111 1121111 24567788
Q ss_pred EcCCCCEEEEEecC--eEEEEEeecCC--cceEeeeecCCCCCcceEEEEEcC--CCCeEEEE
Q 011256 414 FDHSGSYLAVASAD--IRVYQVASVKA--DWNCIKTFPDLSGTGKATCVKFGP--DAKYIAVG 470 (490)
Q Consensus 414 ~s~~~~~l~~~~~d--i~v~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~ 470 (490)
++++|.++++--.. |..|+...... +...+..-.. ....+.++.+.+ +|.+.+.+
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEE
Confidence 99988877776666 77777532111 2222222111 134678899998 77665544
No 461
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.76 E-value=2.7 Score=43.17 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=68.5
Q ss_pred EEEEcCCCcEEEEEcCC----CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC------EEEEECCCCc
Q 011256 326 SAAFHPDGLILGTGTSE----ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG------VKLWDLRKLK 395 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~------i~iwd~~~~~ 395 (490)
-++|-.|..+.+++... ..+++|. +.|..-..-.+..+.-..++|-|.|..+++-..|| |.++.-. +-
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GL 283 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GL 283 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccC-Cc
Confidence 45555566666665432 2355554 22222111122233344589999999999876442 5555432 21
Q ss_pred ceeeeec-CCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC
Q 011256 396 NFRSFES-SDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 465 (490)
Q Consensus 396 ~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 465 (490)
.-..+.. ......+...+|+-....++++..+ +.+|... +..|-...... -..+.-+.|+|...
T Consensus 284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttk--NyhWYLK~e~~----ip~~s~vkwhpe~~ 349 (1243)
T COG5290 284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTK--NYHWYLKVERQ----IPGISYVKWHPEEK 349 (1243)
T ss_pred ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEcc--ceEEEEEEeec----CCCcceeeeccccC
Confidence 1111111 0113345667787777777777777 8888752 12333333322 22456678888543
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.72 E-value=3 Score=39.98 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=85.2
Q ss_pred cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE-eecCCCCCCCCCce-EEEEcCCCcEEEEEcCCCcEEEE-ECC
Q 011256 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYT-SAAFHPDGLILGTGTSEALVKIW-DVK 351 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~iw-d~~ 351 (490)
..|..+-..|+|+.+..-+. ..+.++++.+...... +...........|+ .+..-..|.-+.+++.||.|.-| |.+
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 45667778899987776655 6788888765443221 11110000001122 12223345667788889988766 555
Q ss_pred CCc-----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 352 SQA-----NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 352 ~~~-----~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
.+. .++.++-...++..+.-..+.+-+++-+.+| +.++.....+....-.. -..+..+++||.+.++++-.
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---YQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh---hcCcceeeeCcccchheeec
Confidence 432 1222222223333333223345556666666 66654433332221111 23567789999999998877
Q ss_pred cC-eEEEEEee
Q 011256 426 AD-IRVYQVAS 435 (490)
Q Consensus 426 ~d-i~v~~~~~ 435 (490)
.. ++++.++.
T Consensus 377 ~gki~~~~l~N 387 (733)
T COG4590 377 QGKIRLAQLEN 387 (733)
T ss_pred CCceEEEEecC
Confidence 66 99998854
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.70 E-value=2.8 Score=33.16 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=69.4
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCC--------cEEEEeccCccCEEEEEEee-----CCCEEEEEeCCCcEEEEeC
Q 011256 192 SLDIHYSKDVIATGGVDTNAVLFDRPSG--------QIVTTLSGHSKKVTSVKFVT-----EGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~dg~i~iwd~ 258 (490)
.-.|......|++++.-|.|.|++.... ..+..+. -...|++++-.+ +.+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456666678888999999999986532 2334444 456688886544 3457777776 57899999
Q ss_pred CCCCccceeeeecccccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLT 310 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~ 310 (490)
.... -.-++.-.+.|+++.+-.- ..-++..+.+..|.-||.+..+...
T Consensus 81 ~~N~----d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 81 ENNS----DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred ccCc----hhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 8742 1122334467787776431 2334444455667777765554443
No 464
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=93.66 E-value=13 Score=40.57 Aligned_cols=175 Identities=10% Similarity=-0.013 Sum_probs=92.6
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcE----EE--EeccCccCEEEEEEeeCCCEEEEEeCCCcE---EEEeCCCCC--
Q 011256 194 DIHYSKDVIATGGVDTNAVLFDRPSGQI----VT--TLSGHSKKVTSVKFVTEGDLFLTGSADKTV---RVWQGSEDG-- 262 (490)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~--~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i---~iwd~~~~~-- 262 (490)
++-++.+.+++-+.+|.|+-....+-.. .. .+.. .+.+..+.-....+.|+.-+..|.+ ++|++....
T Consensus 511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke-~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~ 589 (957)
T PRK13979 511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYRE-GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWK 589 (957)
T ss_pred HcCCCcceEEEEecCCEEEEccccccccccccccccccCC-CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcC
Confidence 3456777888889999888776543211 11 1122 2344444444445555555666764 566665532
Q ss_pred -ccceeeeecc----cccceEEEE-Ee--cCCCEEEEEECCCeEEEEeCCCCeE----EEEeecCCCCCCCCCceEEEEc
Q 011256 263 -NYDCKHTLKD----HTAEVQAVT-VH--ATNKYFVTASLDNTWCFYDLSSGIC----LTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 263 -~~~~~~~~~~----h~~~v~~l~-~~--~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
....+..+-. ....|..+. +. ..+.+++.++..|.|+-..+..... ...+.. .. ...+..+.+.
T Consensus 590 ~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL---~e-~DeLV~v~~~ 665 (957)
T PRK13979 590 EKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKL---KK-GEKLIKVKLV 665 (957)
T ss_pred CCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEc---CC-CCEEEEEEEc
Confidence 1122222211 133344333 32 2345788899999999887653221 111111 11 1444455544
Q ss_pred CCC---cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCC
Q 011256 331 PDG---LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY 376 (490)
Q Consensus 331 ~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 376 (490)
..+ ..++..+..|....|+... +.........|..+.+.++..
T Consensus 666 ~~~~~~~~Iil~Tk~G~airF~~~e---Vr~mGR~a~GVkgI~L~~~D~ 711 (957)
T PRK13979 666 DRTREEKFIKIKTKKGLSFTVEEPE---LEPVDRNIIGYQLFDLLPNDS 711 (957)
T ss_pred CCCCCCCEEEEEeCCCcEEEEEHHH---CcccCCCCcCeeeEeeCCCCE
Confidence 432 4677778888888887643 223332355788888866543
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.65 E-value=6.5 Score=37.14 Aligned_cols=141 Identities=15% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCcE---EEEeccCccCE--EEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCC
Q 011256 198 SKDVIATGGVD-----TNAVLFDRPSGQI---VTTLSGHSKKV--TSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDG 262 (490)
Q Consensus 198 ~~~~l~~~~~d-----g~i~iwd~~~~~~---~~~~~~h~~~v--~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~ 262 (490)
++.+++.|+.+ ..+..||+.+... ...+..-..+. .+++. -++.+.+.|+.. ..+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~- 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ- 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC-
Confidence 46677777754 3566777766543 12222111111 12222 266777777642 35778887763
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCC----eEEEEeCCCCeEEEEeecCCCCCCCCCc--eEEEEcCCCcEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN----TWCFYDLSSGICLTQVSDAGTDGRPEGY--TSAAFHPDGLIL 336 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l 336 (490)
.+..+..+.... .........+++.++.|+.++ .+.+||..+......-... ....+... .+.....++.++
T Consensus 150 ~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 150 EWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPT-TDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred CeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCC-CCCCceeccceeEEEECCCEEE
Confidence 344333222111 112222233577777787654 3568888877654322110 00001111 111223357788
Q ss_pred EEEcCC
Q 011256 337 GTGTSE 342 (490)
Q Consensus 337 ~~g~~d 342 (490)
+.|+.+
T Consensus 228 v~GG~~ 233 (323)
T TIGR03548 228 CIGGFN 233 (323)
T ss_pred EECCcC
Confidence 888765
No 466
>PLN02153 epithiospecifier protein
Probab=93.59 E-value=6.9 Score=37.29 Aligned_cols=185 Identities=9% Similarity=0.052 Sum_probs=84.3
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCC-CCCCCceEEEEcCCCcEEEEEcCC-----------CcEEE
Q 011256 285 TNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTD-GRPEGYTSAAFHPDGLILGTGTSE-----------ALVKI 347 (490)
Q Consensus 285 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~d-----------g~i~i 347 (490)
++.+++.|+.+ ..+.+||+.+......-...... .....-.+++ .-++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666777653 35778898876654321110000 0001112222 2356677777653 24778
Q ss_pred EECCCCceee--eec---CCCCCeEEEEEcCCCCEEEEEeC--------------CCEEEEECCCCcceeeeec---CCC
Q 011256 348 WDVKSQANVA--KFD---GHVGAVTAISFSENGYYLATAAH--------------DGVKLWDLRKLKNFRSFES---SDS 405 (490)
Q Consensus 348 wd~~~~~~~~--~~~---~~~~~i~~l~~s~~~~~l~~~~~--------------d~i~iwd~~~~~~~~~~~~---~~~ 405 (490)
||..+.+=.. ... ..........+ ++++++.++. +.+.+||+.+.+-...-.. +..
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 8887653221 110 01111122222 5555555432 2288899887654322110 100
Q ss_pred CCCeeEEEEcCCCCEEEEEecC--------------eEEEEEeecCCcceEeeeecCCC-CC--cceEEEEEcCCCCeEE
Q 011256 406 ETPTNSVDFDHSGSYLAVASAD--------------IRVYQVASVKADWNCIKTFPDLS-GT--GKATCVKFGPDAKYIA 468 (490)
Q Consensus 406 ~~~i~~i~~s~~~~~l~~~~~d--------------i~v~~~~~~~~~~~~~~~~~~~~-~~--~~v~~~~~s~~~~~l~ 468 (490)
......+ ..++.+++.|+.. ..+|.++.....|..+....... +. ....++.+..+++.++
T Consensus 242 r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~ 319 (341)
T PLN02153 242 RSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLM 319 (341)
T ss_pred cceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEE
Confidence 1111222 2346666676641 14666666666777654221100 01 1122344444556777
Q ss_pred EEeCCC
Q 011256 469 VGSMDR 474 (490)
Q Consensus 469 s~~~dg 474 (490)
.||.++
T Consensus 320 ~gG~~~ 325 (341)
T PLN02153 320 HGGKLP 325 (341)
T ss_pred EcCcCC
Confidence 777644
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.55 E-value=1 Score=40.11 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=74.2
Q ss_pred EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C---EEEEECCCCcceeeee----cCCCCCCeeEEEEcC
Q 011256 345 VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G---VKLWDLRKLKNFRSFE----SSDSETPTNSVDFDH 416 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~---i~iwd~~~~~~~~~~~----~~~~~~~i~~i~~s~ 416 (490)
-.+||+.+++....-........+-.|.+||++|.+|+.. | +++|+.........+. .......-.+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578888875432222223334445678899999998874 2 8888865411111111 111133445556668
Q ss_pred CCCEEEEEecCeEEEEEeecC---CcceE---eeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 417 SGSYLAVASADIRVYQVASVK---ADWNC---IKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 417 ~~~~l~~~~~di~v~~~~~~~---~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
||+.|++|+...-.|.+-... ..... +..........---.+...|+|++++.+..++. |||...+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCC
Confidence 999999999883333332111 10111 111111111222335677899999999887654 4566554
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=9.9 Score=39.10 Aligned_cols=175 Identities=10% Similarity=0.146 Sum_probs=87.1
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe----ccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL----SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
+.+..+.|+.+.. |++...+|++++|++. |..+... ......|..+.|..+|-.+.+ .+|.+.+-+-...
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~-- 157 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEE-- 157 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCc--
Confidence 3788999996655 5556789999999975 3333221 222344666666656643333 3455544332221
Q ss_pred cceeeeec---ccccceEEEEEecCCC---EEEEEE-CCCeEEEEeCCCCe-EEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 264 YDCKHTLK---DHTAEVQAVTVHATNK---YFVTAS-LDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 264 ~~~~~~~~---~h~~~v~~l~~~~~~~---~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
.....+. ....+-.|-...+++. .++-.. ..+ ..++-.+.+. ....+ ......+..+.++|+.++
T Consensus 158 -~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~-----~~~~~~~~ki~VS~n~~~ 230 (829)
T KOG2280|consen 158 -PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL-----SWPNSSVVKISVSPNRRF 230 (829)
T ss_pred -chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc-----CCCCceEEEEEEcCCcce
Confidence 1111111 1111112222222211 111111 000 0111111111 00111 111256788999999999
Q ss_pred EEEEcCCCcEEEEECCCCceeeeecCC-CCCeEEEEEcCCC
Q 011256 336 LGTGTSEALVKIWDVKSQANVAKFDGH-VGAVTAISFSENG 375 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~ 375 (490)
|+.-+..|.|.+-+....+....+... ..+-..++|.-+.
T Consensus 231 laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 231 LALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 999999999999988777766666521 1222356665443
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.24 E-value=0.7 Score=40.76 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=50.5
Q ss_pred EEcCCCcEEEEEcCCCcEEEEECCCCceeeee-------c-------CCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCC
Q 011256 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKF-------D-------GHVGAVTAISFSENGYYLATAAHDGVKLWDLRK 393 (490)
Q Consensus 328 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~ 393 (490)
.+..++.++++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+.+..+.||..-
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 35557888999999999999999988765432 1 244678888888888888877765588887664
Q ss_pred C
Q 011256 394 L 394 (490)
Q Consensus 394 ~ 394 (490)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=3.2 Score=40.56 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=56.4
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 310 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 310 (490)
.|..+..++.|..++-.|.+|.+.++=... +..-..+......|+|=.+.- +..|++.+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~r---wG~~s~~eDgk~~v~CRt~~i-~~~~ftss~---------------- 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKR---WGKNSEFEDGKSTVNCRTTPV-AERFFTSST---------------- 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhh---cCccceecCCCceEEEEeecc-cceeeccCC----------------
Confidence 366777788999888888888665542111 111222232333344444432 222222111
Q ss_pred EeecCCCCCCCCCceEEEEcCCC---cEEEEEcCCCcEEEEECCCCceeeee
Q 011256 311 QVSDAGTDGRPEGYTSAAFHPDG---LILGTGTSEALVKIWDVKSQANVAKF 359 (490)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~ 359 (490)
.-.+..++|||+. ..|..-+.|..|++||+.....+...
T Consensus 165 ----------~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 165 ----------SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred ----------ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 0234567888865 56677778999999999876665443
No 471
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.08 E-value=8.5 Score=36.81 Aligned_cols=186 Identities=16% Similarity=0.224 Sum_probs=108.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEe----eCCCE--EEEEe-CC---CcEEEEeCCCCCccce
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFV----TEGDL--FLTGS-AD---KTVRVWQGSEDGNYDC 266 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~~~--l~s~s-~d---g~i~iwd~~~~~~~~~ 266 (490)
|...+++....++-+.+||+. |+.++.+. .+.++.+..- -+|+. |+.++ .+ .+|++|.+.... ..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--GE 140 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT--TE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC--Cc
Confidence 345678877888899999995 77777765 2345554432 24442 44444 32 469999876421 11
Q ss_pred eeeec-------ccccceEEEEEe--c-CCC-EEEEEECCCeEEEEeCC---CC----eEEEEeecCCCCCCCCCceEEE
Q 011256 267 KHTLK-------DHTAEVQAVTVH--A-TNK-YFVTASLDNTWCFYDLS---SG----ICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 267 ~~~~~-------~h~~~v~~l~~~--~-~~~-~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
+..+. .....+..+++. + +|. +++....+|.+..|-+. .+ +.++.+... ..+..+.
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~------sQ~EGCV 214 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG------SQPEGCV 214 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S------S-EEEEE
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC------CcceEEE
Confidence 22221 112346777764 3 344 66777889988877664 33 345555533 5688888
Q ss_pred EcCCCcEEEEEcCCCcEEEEECCCC-----ceeeeecC--CCCCeEEEEEcC--CC-CEEEEEeCC-C-EEEEECCC
Q 011256 329 FHPDGLILGTGTSEALVKIWDVKSQ-----ANVAKFDG--HVGAVTAISFSE--NG-YYLATAAHD-G-VKLWDLRK 393 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~--~~~~i~~l~~s~--~~-~~l~~~~~d-~-i~iwd~~~ 393 (490)
.......|+.|-++.-|.-|+.... ..+....+ ....|-.|++-. ++ .||++++.+ + ..|||...
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8888889999999988888887522 22322222 334677777743 33 366666655 4 99999775
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.02 E-value=15 Score=39.42 Aligned_cols=229 Identities=14% Similarity=0.189 Sum_probs=111.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC------CEEEEEECCCeEEEEeCCCCeEEEEee
Q 011256 240 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN------KYFVTASLDNTWCFYDLSSGICLTQVS 313 (490)
Q Consensus 240 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~ 313 (490)
+...++.+-.+|.+..+.....+.......-..-...|.|+++.++. ++++.++.|+.++++.+....++..+.
T Consensus 548 nr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls 627 (1205)
T KOG1898|consen 548 NRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS 627 (1205)
T ss_pred cceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc
Confidence 34445555566666666554433322232223345678899987754 579999999999999998777777776
Q ss_pred cCCCCCCCCCceEEEE---cCCC------cEEEEEcCCCcEEEE--ECCCCceeeeecC--CCCCe--EEEEEcCCCCEE
Q 011256 314 DAGTDGRPEGYTSAAF---HPDG------LILGTGTSEALVKIW--DVKSQANVAKFDG--HVGAV--TAISFSENGYYL 378 (490)
Q Consensus 314 ~~~~~~~~~~v~~~~~---~~~~------~~l~~g~~dg~i~iw--d~~~~~~~~~~~~--~~~~i--~~l~~s~~~~~l 378 (490)
..... ..+.++.+ ..++ -+|.+|-.+|.+.-+ |.-+|.....-.. ...++ ..+....+...|
T Consensus 628 ~q~l~---~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~~s~vL 704 (1205)
T KOG1898|consen 628 VQGLS---SPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRGQSDVL 704 (1205)
T ss_pred ccccC---CCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceeeeheeeeccccceEEEEeecCcceeE
Confidence 44332 33444433 2233 245566666655433 3333422211100 01122 222333233344
Q ss_pred EEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceE
Q 011256 379 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKAT 456 (490)
Q Consensus 379 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 456 (490)
+..+... .+.+ +.......+.... .....+++-......+...+.+ .++..+....... ....++ ......
T Consensus 705 ~lSsr~wl~y~~--~~~~h~t~Isy~~-l~~as~~~S~qcpeGiv~i~~n~l~i~~~~~~g~~~-n~~~~~---l~~tpr 777 (1205)
T KOG1898|consen 705 ALSSRPWLLYTY--QQEFHLTPISYST-LEHASPFCSEQCPEGIVAISKNTLRIIALDKLGKVL-NVDGFP---LAYTPR 777 (1205)
T ss_pred EecCChhhhhhh--cceeeeecccccc-hhccccccccCCCcchhhhhhhhhheeeehhhcccc-cccccc---cccCcc
Confidence 4444332 2222 2211111111110 1112222222233344444555 6666553322211 111121 245667
Q ss_pred EEEEcCCCCeEEEEeCCCcEEE
Q 011256 457 CVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 457 ~~~~s~~~~~l~s~~~dg~v~i 478 (490)
.++.+|....|+.+..|.....
T Consensus 778 kvv~h~es~lLii~~td~~~~~ 799 (1205)
T KOG1898|consen 778 KVVIHPESGLLIIGRTDHNATL 799 (1205)
T ss_pred eEEEecCCCeEEEEEecccchh
Confidence 7888888888888877665433
No 473
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.94 E-value=8.8 Score=36.63 Aligned_cols=53 Identities=13% Similarity=0.298 Sum_probs=27.1
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCcEEEEeccCccCEEEE-EE-eeCCCEEEEEeCC
Q 011256 198 SKDVIATGGVD-----------TNAVLFDRPSGQIVTTLSGHSKKVTSV-KF-VTEGDLFLTGSAD 250 (490)
Q Consensus 198 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~h~~~v~~l-~~-~~~~~~l~s~s~d 250 (490)
++.+.+.|+.+ ..+..||..+..-...-.......... .. .-++.+.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 57777777753 247778876654332211111111111 11 2377778888764
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.63 E-value=9.4 Score=36.14 Aligned_cols=161 Identities=14% Similarity=0.226 Sum_probs=95.2
Q ss_pred ccceEEEEEecCCCEEEEEECCCe------EEEEeCCCC----eEEE---EeecCCCCCCC-----CCceEEEEcCCCcE
Q 011256 274 TAEVQAVTVHATNKYFVTASLDNT------WCFYDLSSG----ICLT---QVSDAGTDGRP-----EGYTSAAFHPDGLI 335 (490)
Q Consensus 274 ~~~v~~l~~~~~~~~l~s~~~dg~------i~iwd~~~~----~~~~---~~~~~~~~~~~-----~~v~~~~~~~~~~~ 335 (490)
-+.+..|.+.+++..+++.+.+|. +..+++... ..+. ........+.. ...-++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788888877777777788887 666665431 1111 11100011111 13457888778888
Q ss_pred EEEEcCC------CcEEEEECCCCceeeeec---------------CCCCCeEEEEEcCCCCEEEEEeCCC---------
Q 011256 336 LGTGTSE------ALVKIWDVKSQANVAKFD---------------GHVGAVTAISFSENGYYLATAAHDG--------- 385 (490)
Q Consensus 336 l~~g~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~~~~l~~~~~d~--------- 385 (490)
+++.-.+ ..|..++.. |+.+..+. ..+..+.+|+++|+|+.|+++.+..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8876666 678888866 55544331 1345788999999999666654321
Q ss_pred ------EEE--EECCC-Ccceeee--ecCC-----CCCCeeEEEEcCCCCEEEEEec-------CeEEEEEee
Q 011256 386 ------VKL--WDLRK-LKNFRSF--ESSD-----SETPTNSVDFDHSGSYLAVASA-------DIRVYQVAS 435 (490)
Q Consensus 386 ------i~i--wd~~~-~~~~~~~--~~~~-----~~~~i~~i~~s~~~~~l~~~~~-------di~v~~~~~ 435 (490)
+++ ||..+ +.....+ .... ....+..+.+-+++++|+.=-. .++||.++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence 344 45444 2222222 2221 2567889999999998775322 278887764
No 475
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.63 E-value=9.3 Score=36.08 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCcEEEEEcCC-----CcEEEEECCCCce---eeeecCCCCCe--EEEEEcCCCCEEEEEeCC------CEEEEECCCCc
Q 011256 332 DGLILGTGTSE-----ALVKIWDVKSQAN---VAKFDGHVGAV--TAISFSENGYYLATAAHD------GVKLWDLRKLK 395 (490)
Q Consensus 332 ~~~~l~~g~~d-----g~i~iwd~~~~~~---~~~~~~~~~~i--~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~ 395 (490)
++.+++.|+.+ ..+..||+.+.+- ...+..-..+. .+++.. ++++.+.|+.. .+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3567778766543 12221111111 122222 56666666641 28888988654
Q ss_pred ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC----eEEEEEeecCCcceEeeeecCCCCCc---ceEEEEEcCCCCeEE
Q 011256 396 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVASVKADWNCIKTFPDLSGTG---KATCVKFGPDAKYIA 468 (490)
Q Consensus 396 ~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~ 468 (490)
-...-.... .......+...++++.+.|+.+ ..++.++.....|..+.......... ....+. ..++++++
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv 228 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLC 228 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEE
Confidence 322111111 1111222233456666666653 22334444445676654432100010 111222 23667888
Q ss_pred EEeCC
Q 011256 469 VGSMD 473 (490)
Q Consensus 469 s~~~d 473 (490)
.||.+
T Consensus 229 ~GG~~ 233 (323)
T TIGR03548 229 IGGFN 233 (323)
T ss_pred ECCcC
Confidence 88876
No 476
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.38 E-value=0.67 Score=28.44 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=26.5
Q ss_pred cceEEEEEecCC---CEEEEEECCCeEEEEeCCCC
Q 011256 275 AEVQAVTVHATN---KYFVTASLDNTWCFYDLSSG 306 (490)
Q Consensus 275 ~~v~~l~~~~~~---~~l~s~~~dg~i~iwd~~~~ 306 (490)
+.|.++.|+|.+ ++|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999854 48888888899999999863
No 477
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.31 E-value=0.66 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.0
Q ss_pred CceEEEEcCCC---cEEEEEcCCCcEEEEECCCC
Q 011256 323 GYTSAAFHPDG---LILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 323 ~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~ 353 (490)
.+.++.|+|++ .+|+.+-..|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 57899999854 58888888899999999963
No 478
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=92.26 E-value=0.53 Score=40.29 Aligned_cols=52 Identities=27% Similarity=0.276 Sum_probs=32.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhh
Q 011256 46 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 97 (490)
Q Consensus 46 a~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~ 97 (490)
+++.-+++|++-...++.|+...-.+-..-.....+..+||||||+.+.++-
T Consensus 9 ~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 9 KLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555555443222222235567788999999999988765
No 479
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.24 E-value=9.1 Score=35.06 Aligned_cols=204 Identities=11% Similarity=0.112 Sum_probs=109.7
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCC------CCe-EEEEeecCCCCCCCCCceEEEEcCCC------------cEE
Q 011256 276 EVQAVTVHATNKYFVTASLDNTWCFYDLS------SGI-CLTQVSDAGTDGRPEGYTSAAFHPDG------------LIL 336 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~------~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l 336 (490)
.-+.|+++|.+.+-++....+...+||.. ... .+..+........+...+.+.|+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888999999986 121 22222211111122456777776432 236
Q ss_pred EEEcCCCcEEEEECCCCce-----eeeecC-CCCCe-EEEEEcCC--CCEEEEEeCC-C-EEEEECCCCccee--eeecC
Q 011256 337 GTGTSEALVKIWDVKSQAN-----VAKFDG-HVGAV-TAISFSEN--GYYLATAAHD-G-VKLWDLRKLKNFR--SFESS 403 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~-----~~~~~~-~~~~i-~~l~~s~~--~~~l~~~~~d-~-i~iwd~~~~~~~~--~~~~~ 403 (490)
+.+++||+|.-|...-+.. ...+.. ..+.| ..+++..+ +.+|..+.-. + |.|||-.-.+... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6778999999998532221 122221 12333 34555543 5666666554 4 9999854332211 11111
Q ss_pred --CCCCCeeEEEEcCCCCEEEE-------------EecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC----
Q 011256 404 --DSETPTNSVDFDHSGSYLAV-------------ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP---- 462 (490)
Q Consensus 404 --~~~~~i~~i~~s~~~~~l~~-------------~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---- 462 (490)
........|.-- .+++.++ |... |.+|+. ....++.+.........+.|+..|
T Consensus 184 ~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 184 ALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 001111111111 1222221 1111 667764 566666664433345567777755
Q ss_pred --CCCeEEEEeCCCcEEEecCCCCC
Q 011256 463 --DAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 463 --~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.|.+|+----||+|..||..++.
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 45666665569999999987543
No 480
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.21 E-value=0.92 Score=40.00 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=46.5
Q ss_pred EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC-C-CC-------CCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCC
Q 011256 282 VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA-G-TD-------GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS 352 (490)
Q Consensus 282 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-~~-------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 352 (490)
+..++.++++.+.+|.+++||+.+++.+...... . .. .....|..+.++.+|.-+++- .+|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 3456899999999999999999998876543100 0 00 233567777777777665554 346677777543
No 481
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.40 E-value=2.3 Score=29.42 Aligned_cols=63 Identities=24% Similarity=0.211 Sum_probs=47.7
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhh
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 97 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~ 97 (490)
+..++||+.+|.+.=.+-.....+..+++|-..++-+---|+.-+.+|..|.+.++++|....
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999998887777777777777777777777777777778888888887777766543
No 482
>PLN02193 nitrile-specifier protein
Probab=90.90 E-value=19 Score=36.12 Aligned_cols=192 Identities=9% Similarity=0.077 Sum_probs=91.5
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCcEEEEeccC---c--cCEEEEEEeeCCCEEEEEeCC-----CcEEEEeCCC
Q 011256 198 SKDVIATGGVD-------TNAVLFDRPSGQIVTTLSGH---S--KKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSE 260 (490)
Q Consensus 198 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~h---~--~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~ 260 (490)
++.+++.|+.+ ..+.+||+.+.+-.. +... . .........-++.+++.|+.+ ..+.+||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 34566666643 247788877654332 2110 0 001111122256667777765 3577888776
Q ss_pred CCccceeeeecc--cccceEEEEEecCCCEEEEEECCC-----eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 261 DGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 261 ~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
. .+..+..... ....-.++.. -+++.++.|+.++ .+..||+.+................... .++. -++
T Consensus 254 ~-~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~g 329 (470)
T PLN02193 254 N-EWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQG 329 (470)
T ss_pred C-EEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECC
Confidence 3 3333322210 0011112222 2466677776543 4678888877654322110000011111 2222 256
Q ss_pred cEEEEEcCC----CcEEEEECCCCceeeeec----CCC-CCeEEEEEcCCCCEEEEEeCC---------------CEEEE
Q 011256 334 LILGTGTSE----ALVKIWDVKSQANVAKFD----GHV-GAVTAISFSENGYYLATAAHD---------------GVKLW 389 (490)
Q Consensus 334 ~~l~~g~~d----g~i~iwd~~~~~~~~~~~----~~~-~~i~~l~~s~~~~~l~~~~~d---------------~i~iw 389 (490)
++++.|+.+ ..+.+||+.+.+-...-. ... ....++.+ ++++++.|+.. .+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEE
Confidence 777777655 458899998764322111 111 11222233 56677776642 27788
Q ss_pred ECCCCcc
Q 011256 390 DLRKLKN 396 (490)
Q Consensus 390 d~~~~~~ 396 (490)
|+.+.+-
T Consensus 408 D~~t~~W 414 (470)
T PLN02193 408 DTETLQW 414 (470)
T ss_pred EcCcCEE
Confidence 8876543
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.74 E-value=3.2 Score=45.21 Aligned_cols=143 Identities=15% Similarity=0.260 Sum_probs=89.6
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEE--------cCC-CCEEEEEeCCCEEEEECCCCcc-------eeeeecC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISF--------SEN-GYYLATAAHDGVKLWDLRKLKN-------FRSFESS 403 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~--------s~~-~~~l~~~~~d~i~iwd~~~~~~-------~~~~~~~ 403 (490)
+-|..+.+|+..++.....+.+....|..+.. -|. ...|+.+..-.|.++-+...+. ...+...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35788999999998777777776666666643 222 2344555444455554322111 1112222
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCeEEEEEeec-CCcceE-------------------eeeecCCCCCcceEEEEEcCC
Q 011256 404 DSETPTNSVDFDHSGSYLAVASADIRVYQVASV-KADWNC-------------------IKTFPDLSGTGKATCVKFGPD 463 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~-~~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~ 463 (490)
.....|.++....+|+.+++|-.+ .+|.+.-. ...|.. +..+. ..+..+|..+.+...
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEeccc
Confidence 225678899988889988887766 66665311 111111 11111 123568999999988
Q ss_pred CCeEEEEeCCCcEEEecCCCC
Q 011256 464 AKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 464 ~~~l~s~~~dg~v~iw~~~~~ 484 (490)
...|.+-+..|+|.+|++..+
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred cceeeeeccCceEEEEEccCC
Confidence 889999999999999999874
No 484
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.62 E-value=16 Score=34.84 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=21.3
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 296 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
..+.+||..+......-... . . ...-.++ ...++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p-~-~-~r~~~~~-~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENP-F-L-GTAGSAI-VHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCC-C-C-cCCCceE-EEECCEEEEEeeee
Confidence 45788898876654322111 0 0 0111222 23367777777653
No 485
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.56 E-value=19 Score=35.54 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCC
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKS 352 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 352 (490)
..|..+...+..+++++.+.+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899998889999999999999999974
No 486
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.53 E-value=13 Score=33.53 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=112.1
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEE
Q 011256 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQ 311 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 311 (490)
-..++-.|||..-+++...|.|--.|..++ +....--+....-..|..-|++..-++-+.. -|.-+|-++.... .
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~ 138 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-R 138 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-E
Confidence 345666777777777776676666666664 2222222334445566677777655543332 4555555444432 2
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC-CCCCeEEEEEcCCCCEEEEEeCCC-EEEE
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLW 389 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iw 389 (490)
+... ...-........|.+.|++-+++.. |.---.|..+ ..+..+.. ....-+.|+..|+|..-++.-.+. |-..
T Consensus 139 f~lp-~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 139 FPLP-LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred eecc-cccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEc
Confidence 2211 1122356788899999998888753 2111112111 22333322 233567889999998888776666 7777
Q ss_pred ECCCCcceeeeecCCC-CCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceE
Q 011256 390 DLRKLKNFRSFESSDS-ETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNC 442 (490)
Q Consensus 390 d~~~~~~~~~~~~~~~-~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~ 442 (490)
|...+.. ..+..... ......+--+|.|..-++......++.++.....|..
T Consensus 216 dp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 216 DPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred ccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence 7666522 22332221 2334455557777777775555666666555555543
No 487
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.53 E-value=6 Score=40.51 Aligned_cols=177 Identities=14% Similarity=0.199 Sum_probs=92.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
..++++.-+|.|..++.+..||+|++|+........... ...+-..+.|...| |+++..|..+--|.-+. ...
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg----vvq 87 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDG----VVQ 87 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccC----cch
Confidence 457788889999999999999999999986554322222 22334456665555 67777788888885433 111
Q ss_pred eeec---ccccceEEEEEecCCCEEEEEECCCeEEEEeC--CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 268 HTLK---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDL--SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 268 ~~~~---~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
..+. .......++...|..+.+ +|.--|-|.-+|. +.+-....+. .+ .+ .-
T Consensus 88 qqfdyndqsekefss~~cdptaqnv-vgtlcggv~q~dcclrr~i~knkfe----------~t-----------yv--~p 143 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNV-VGTLCGGVEQFDCCLRRGILKNKFE----------LT-----------YV--AP 143 (1636)
T ss_pred hhccccchhhhhccceecCchhhhh-hhhhccceeeehHHHHhHHHhccce----------eE-----------Ee--cc
Confidence 1111 112233444445544322 2222233333332 1111000000 00 01 12
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCc
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK 395 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~ 395 (490)
..|.+-|+.++.....+....-.|..+.+.-..+|++.-....|.+=|+.+.+
T Consensus 144 shvilkdlsn~trt~l~s~~g~aidelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 144 SHVILKDLSNDTRTNLISHKGLAIDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred ceeeeecccCCceEeeeecCCcchhhhhhccccceEEeeccccEEEeecccch
Confidence 34555666655544333322224555555555677776666668888887654
No 488
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=90.30 E-value=2.5 Score=44.67 Aligned_cols=72 Identities=10% Similarity=0.135 Sum_probs=52.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCC--CcEEEEe---ccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTL---SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
.-.|+.....+.++++|...|.+.+|+... +...... .+++.++..+.|.|++..++.+-..|...+|....
T Consensus 150 DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 150 DAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred cceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence 345666666788999999999999997643 2222211 23444777888999999999998889999997554
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.77 E-value=3.1 Score=43.09 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=87.0
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeee-ecccccceEEEEEecCCCEEEEEECCCeEEE--------EeCCCCeEEEEee
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATNKYFVTASLDNTWCF--------YDLSSGICLTQVS 313 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~i--------wd~~~~~~~~~~~ 313 (490)
.+..|+.++.+.++.-..+....+... .......+.++.+++ ..+..|.-||++-. ||.+-...+.
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss--~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~--- 623 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS--GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIP--- 623 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc--cccccCccCCccccccCCCCCCCCCCCccccc---
Confidence 477888999999997653222222222 222334566666653 23444445555444 5544111111
Q ss_pred cCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec---CCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 011256 314 DAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD---GHVGAVTAISFSENGYYLATAAHDGVKLWD 390 (490)
Q Consensus 314 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd 390 (490)
....++.+.++..| ++.|+.+|.|.++...+........ .|...|+++.+..+|-+++..+.+.+++++
T Consensus 624 -----~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfh 695 (925)
T KOG3522|consen 624 -----TGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFH 695 (925)
T ss_pred -----cCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEec
Confidence 11245667776655 6667889999999987654444433 355689999999899888888888787777
Q ss_pred CCCCccee
Q 011256 391 LRKLKNFR 398 (490)
Q Consensus 391 ~~~~~~~~ 398 (490)
..+.....
T Consensus 696 tetl~hlq 703 (925)
T KOG3522|consen 696 TETLWHLQ 703 (925)
T ss_pred ccccCCcc
Confidence 66554433
No 490
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.46 E-value=17 Score=40.04 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=25.1
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.....++|+|.-.+++.|+.+|.|++|-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345678899999999999999999999643
No 491
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.23 E-value=23 Score=34.52 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=78.0
Q ss_pred eEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc--
Q 011256 277 VQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-- 354 (490)
Q Consensus 277 v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-- 354 (490)
...+...+++.+++.+.....++-||-.... -..... .....+..+.+.+++.+++++. .|.+.. ....+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~-W~~~~~----~~~~~l~~v~~~~dg~l~l~g~-~G~l~~-S~d~G~~~ 313 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY-WQPHNR----ASARRIQNMGWRADGGLWLLTR-GGGLYV-SKGTGLTE 313 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc-eEEecC----CCccceeeeeEcCCCCEEEEeC-CceEEE-ecCCCCcc
Confidence 3445556777666665543333334432211 011111 1125688999999999887764 455433 333332
Q ss_pred ---eeeeecC--CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeec-CCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 355 ---NVAKFDG--HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 355 ---~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
....... ....+..+.|.+++..+++|. .|+.+.....++....... .......+.+.|.++++.+++|...
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDG 391 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCc
Confidence 1222221 223589999998877666654 4544444444544333321 1124567899998888877777655
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.23 E-value=4.4 Score=41.59 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=46.0
Q ss_pred eCCCEEEEEeCCCcEEEEeCCC---CC-ccceee--------eec-----------ccccceEEEEEec----CCCEEEE
Q 011256 239 TEGDLFLTGSADKTVRVWQGSE---DG-NYDCKH--------TLK-----------DHTAEVQAVTVHA----TNKYFVT 291 (490)
Q Consensus 239 ~~~~~l~s~s~dg~i~iwd~~~---~~-~~~~~~--------~~~-----------~h~~~v~~l~~~~----~~~~l~s 291 (490)
++...|+.+..||.+....... .+ .+.... .+. .....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3667788889999988877654 11 111100 000 0123455666666 6789999
Q ss_pred EECCCeEEEEeCCCCeEEEEee
Q 011256 292 ASLDNTWCFYDLSSGICLTQVS 313 (490)
Q Consensus 292 ~~~dg~i~iwd~~~~~~~~~~~ 313 (490)
.+.|+++++||+.++.++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977654
No 493
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.19 E-value=35 Score=36.58 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee----c---------------CCCCCeEEEEEcCCCCEEEEEe
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF----D---------------GHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~----~---------------~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
..|.+++...-+.+++....||.|.++|..+.+.+... . .....+..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667777777888999999999999998776544333 1 0111344578999988888877
Q ss_pred CCC-EE
Q 011256 383 HDG-VK 387 (490)
Q Consensus 383 ~d~-i~ 387 (490)
.++ +.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 776 54
No 494
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.15 E-value=0.17 Score=48.45 Aligned_cols=111 Identities=13% Similarity=0.176 Sum_probs=73.5
Q ss_pred CCCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 187 KPGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.+....++|..+++.+ +.+-..+.+.+||+.+... ..+. +....-.-+.|++.+..++.|...|.+.|++..+.
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts--- 149 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS--- 149 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccch---
Confidence 3455677888877744 4456778999999875422 1121 11111122678888888999999999999987764
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
+.+.....|...++++++.+.+ +.+.++.|..+.+-.
T Consensus 150 R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 150 RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTT 186 (615)
T ss_pred hhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhh
Confidence 3333334489999999999765 555666665555443
No 495
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.83 E-value=0.065 Score=51.24 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=94.0
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEe
Q 011256 234 SVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQV 312 (490)
Q Consensus 234 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~ 312 (490)
...|-+.+.-++.++.+..+..||-... ..... ...+....++|..+++.+ +.+-..+.+.+||+.+.... ++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq----~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ----VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc----eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence 4567776666888888888999986542 22222 234556678888777654 44566789999999764321 12
Q ss_pred ecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 313 SDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
.... ...-.-+.|++.+..++.|...|.+.|++..+.+.+...-.|...++++++.+.+..+..+
T Consensus 113 E~gg----~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 113 ESGG----TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred hccC----cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 1111 1222337888888899999999999999988776665555588899999999877554433
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.66 E-value=38 Score=36.39 Aligned_cols=117 Identities=9% Similarity=0.001 Sum_probs=73.9
Q ss_pred CCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCC-----cEEEEeccCcc----------CEEEEEEeeCCCEEEEEeC
Q 011256 186 SKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG-----QIVTTLSGHSK----------KVTSVKFVTEGDLFLTGSA 249 (490)
Q Consensus 186 h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~----------~v~~l~~~~~~~~l~s~s~ 249 (490)
-..+...++|+|. ...||+....|...||++... ........+.+ .-..+.|.++.+.|+.++.
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 3447789999994 468999999999999999211 11111111222 2347889888787887766
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCC
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS 305 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~ 305 (490)
..+.++|+.+...... .........|..+.-+|.. .+++.- ....|...++..
T Consensus 224 -~~l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTEY-LVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred -CceEEEECCCCCccch-hccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 5789999987643222 1222345678888888773 222222 225777778776
No 497
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=88.20 E-value=24 Score=33.50 Aligned_cols=84 Identities=11% Similarity=0.174 Sum_probs=46.4
Q ss_pred EcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC---EEEEECCCCcc-eeeeecCCCCCCeeEEEE
Q 011256 339 GTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKN-FRSFESSDSETPTNSVDF 414 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~-~~~~~~~~~~~~i~~i~~ 414 (490)
+..+|.+.-||..+... ..+...-.-.+.++.|||+.+++.+-... .+.|= ...+. ....-...-.+..-.|..
T Consensus 195 g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi-~g~k~gt~EvFa~~LPG~PDNIR~ 272 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI-KGPKAGTSEVFAEGLPGYPDNIRR 272 (376)
T ss_pred CCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe-cCCccCchhhHhhcCCCCCcceeE
Confidence 34567777787665432 23333334568899999999998886653 35552 22111 001111111334456777
Q ss_pred cCCCCEEEEE
Q 011256 415 DHSGSYLAVA 424 (490)
Q Consensus 415 s~~~~~l~~~ 424 (490)
+++|.+.+.-
T Consensus 273 ~~~G~fWVal 282 (376)
T KOG1520|consen 273 DSTGHFWVAL 282 (376)
T ss_pred CCCCCEEEEE
Confidence 7888765543
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.12 E-value=35 Score=35.28 Aligned_cols=243 Identities=11% Similarity=0.096 Sum_probs=121.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeC-CCCcEEEEec-cCccCEEEEEEeeC---CCEEEEEeCCC-cEEEEeCCCC-
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDR-PSGQIVTTLS-GHSKKVTSVKFVTE---GDLFLTGSADK-TVRVWQGSED- 261 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~-~h~~~v~~l~~~~~---~~~l~s~s~dg-~i~iwd~~~~- 261 (490)
.+.+..++|+.+.+-.|=+...|--|=+ ++.+++..+. ..+..|.|+..... ..+.+.|-.++ .-++-.+..+
T Consensus 29 ~~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~ 108 (670)
T PF10395_consen 29 LQVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKV 108 (670)
T ss_pred eeeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccC
Confidence 3445577888887766655555554433 3556666654 24456777776442 23455553443 3344333222
Q ss_pred ---------CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE--EeecCCCC--CCCCCceEEE
Q 011256 262 ---------GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT--QVSDAGTD--GRPEGYTSAA 328 (490)
Q Consensus 262 ---------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~--~~~~~v~~~~ 328 (490)
........+. -...|..+.|.++++.+++.-.+|.|.+||...+.... ........ .+..-|....
T Consensus 109 ~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~ 187 (670)
T PF10395_consen 109 GSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFE 187 (670)
T ss_pred ccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccc
Confidence 0001111222 35689999999999999999999999999993332221 11110000 0001111111
Q ss_pred EcCCCcEEEEEcC-C---CcEEEEECC-CCceeeeec---CCCCCeEEEEEcC-CCCEEEEEeCCCEEEEECCCCcceee
Q 011256 329 FHPDGLILGTGTS-E---ALVKIWDVK-SQANVAKFD---GHVGAVTAISFSE-NGYYLATAAHDGVKLWDLRKLKNFRS 399 (490)
Q Consensus 329 ~~~~~~~l~~g~~-d---g~i~iwd~~-~~~~~~~~~---~~~~~i~~l~~s~-~~~~l~~~~~d~i~iwd~~~~~~~~~ 399 (490)
......++++-+. + -..+++.+. ....+..+. .+........|+- +|.+..- ..+.|.+|++...+...+
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~t 266 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKT 266 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEE
Confidence 1111233333322 2 246677771 122222222 1122222223332 4544333 444599999998887777
Q ss_pred eecCCC---C-CCeeEEEEcCCCCEEEEEecCeEEEEE
Q 011256 400 FESSDS---E-TPTNSVDFDHSGSYLAVASADIRVYQV 433 (490)
Q Consensus 400 ~~~~~~---~-~~i~~i~~s~~~~~l~~~~~di~v~~~ 433 (490)
+..... . ..+.++.--...+.|++....|.+.++
T Consensus 267 I~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 267 ISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDL 304 (670)
T ss_pred EEechhhccccccceEeecCCCCeEEEEcCCEEEEEee
Confidence 765421 1 234444432234445544444888877
No 499
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.85 E-value=32 Score=34.56 Aligned_cols=104 Identities=21% Similarity=0.148 Sum_probs=53.4
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCC---eEEEEEcCCCCEEEEEe--------------CCCEEEE
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGA---VTAISFSENGYYLATAA--------------HDGVKLW 389 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---i~~l~~s~~~~~l~~~~--------------~d~i~iw 389 (490)
+...++|.+++... ..+..+|+- |+.+..+....+. =..+...|+|++|+.+. .|.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66778898887665 778888874 6665555422211 35677888999888777 2224455
Q ss_pred ECCCCcceeeeecCCC-------------------------CCCeeEEEEcCCCCEEEEEecC-eEEEEEe
Q 011256 390 DLRKLKNFRSFESSDS-------------------------ETPTNSVDFDHSGSYLAVASAD-IRVYQVA 434 (490)
Q Consensus 390 d~~~~~~~~~~~~~~~-------------------------~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 434 (490)
| .+++.+..+....+ -..++++.+++....|++++.. -.||.++
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 5 44444333222111 1347899999966666666655 3555554
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.78 E-value=14 Score=36.44 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEC
Q 011256 365 AVTAISFSENGYYLATAAHDGVKLWDL 391 (490)
Q Consensus 365 ~i~~l~~s~~~~~l~~~~~d~i~iwd~ 391 (490)
.|..+..++.|..++..+.+||.|..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 577888899999999999999777766
Done!