Query 011256
Match_columns 490
No_of_seqs 1025 out of 2602
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 7.7E-51 2.6E-55 388.6 41.3 286 183-480 51-340 (340)
2 1vyh_C Platelet-activating fac 100.0 6.2E-50 2.1E-54 392.1 39.9 284 183-482 104-410 (410)
3 3ow8_A WD repeat-containing pr 100.0 1.3E-45 4.3E-50 349.2 41.0 284 183-482 28-320 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 5.5E-45 1.9E-49 349.9 43.5 288 182-480 59-354 (354)
5 3frx_A Guanine nucleotide-bind 100.0 3.4E-44 1.2E-48 339.4 41.8 287 182-484 12-318 (319)
6 3iz6_a 40S ribosomal protein R 100.0 1.8E-45 6.3E-50 356.8 33.4 300 182-485 61-377 (380)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-44 1.5E-48 342.6 38.1 298 184-487 12-339 (345)
8 2ynn_A Coatomer subunit beta'; 100.0 1.8E-43 6.3E-48 332.0 39.5 286 183-484 9-303 (304)
9 2xzm_R RACK1; ribosome, transl 100.0 4.6E-43 1.6E-47 335.2 40.3 291 182-484 16-341 (343)
10 4ery_A WD repeat-containing pr 100.0 3E-42 1E-46 325.1 43.3 287 182-482 18-311 (312)
11 4gqb_B Methylosome protein 50; 100.0 8E-43 2.7E-47 332.7 37.3 288 184-487 27-335 (344)
12 1erj_A Transcriptional repress 100.0 2.3E-42 7.8E-47 336.7 40.3 282 185-484 62-390 (393)
13 1nr0_A Actin interacting prote 100.0 8.1E-42 2.8E-46 351.8 42.9 297 182-485 142-569 (611)
14 2hes_X YDR267CP; beta-propelle 100.0 1.8E-41 6.2E-46 322.3 41.1 288 183-483 10-328 (330)
15 4g56_B MGC81050 protein; prote 100.0 2.2E-42 7.4E-47 332.1 35.0 287 184-485 39-345 (357)
16 4aow_A Guanine nucleotide-bind 100.0 9.7E-41 3.3E-45 318.2 43.2 289 183-485 34-339 (340)
17 3dm0_A Maltose-binding peripla 100.0 5.5E-41 1.9E-45 351.1 42.3 289 182-482 377-692 (694)
18 1k8k_C P40, ARP2/3 complex 41 100.0 1E-40 3.5E-45 322.2 36.8 297 182-483 3-361 (372)
19 1nr0_A Actin interacting prote 100.0 1.1E-40 3.8E-45 343.4 38.7 293 182-485 13-357 (611)
20 1r5m_A SIR4-interacting protei 100.0 3.4E-40 1.2E-44 324.1 39.2 293 184-483 42-425 (425)
21 3k26_A Polycomb protein EED; W 100.0 1.2E-40 4.3E-45 320.6 34.3 295 179-482 10-365 (366)
22 3zwl_B Eukaryotic translation 100.0 1.2E-39 4E-44 314.0 40.7 289 183-484 28-347 (369)
23 1sq9_A Antiviral protein SKI8; 100.0 2.7E-40 9.1E-45 322.4 35.3 297 181-484 10-396 (397)
24 2ymu_A WD-40 repeat protein; u 100.0 2.3E-39 7.8E-44 331.7 42.3 276 183-480 299-577 (577)
25 3ei3_B DNA damage-binding prot 100.0 1.5E-39 5.3E-44 315.7 37.5 287 182-483 68-382 (383)
26 2ynn_A Coatomer subunit beta'; 100.0 3.4E-39 1.2E-43 302.9 37.6 251 220-485 4-261 (304)
27 3dwl_C Actin-related protein 2 100.0 3.4E-41 1.2E-45 326.5 22.8 293 182-481 6-377 (377)
28 1gxr_A ESG1, transducin-like e 100.0 9.1E-39 3.1E-43 303.9 39.1 279 185-481 49-335 (337)
29 3i2n_A WD repeat-containing pr 100.0 2.2E-39 7.5E-44 310.9 34.5 298 181-484 12-354 (357)
30 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-38 7.7E-43 298.1 39.6 284 180-486 11-299 (313)
31 2ymu_A WD-40 repeat protein; u 100.0 4.4E-38 1.5E-42 322.2 44.0 279 183-483 258-539 (577)
32 3ow8_A WD repeat-containing pr 100.0 1.1E-38 3.7E-43 301.7 36.2 241 183-433 76-319 (321)
33 1vyh_C Platelet-activating fac 100.0 9.4E-39 3.2E-43 312.8 36.4 248 222-485 101-371 (410)
34 2pm9_A Protein WEB1, protein t 100.0 8.5E-40 2.9E-44 320.8 27.7 298 185-484 65-415 (416)
35 4e54_B DNA damage-binding prot 100.0 2.9E-39 9.9E-44 319.2 30.1 290 184-486 116-433 (435)
36 4gqb_B Methylosome protein 50; 100.0 1.2E-38 4.2E-43 303.7 33.3 239 186-434 81-330 (344)
37 1got_B GT-beta; complex (GTP-b 100.0 1E-37 3.4E-42 297.8 36.6 251 220-485 46-303 (340)
38 1gxr_A ESG1, transducin-like e 100.0 4.7E-38 1.6E-42 299.0 33.9 286 186-485 8-298 (337)
39 4aez_A CDC20, WD repeat-contai 100.0 8E-38 2.7E-42 305.5 36.3 279 189-486 95-383 (401)
40 3gre_A Serine/threonine-protei 100.0 1.1E-38 3.9E-43 315.2 28.1 291 181-480 57-437 (437)
41 3vl1_A 26S proteasome regulato 100.0 9.9E-37 3.4E-41 299.5 41.5 286 189-483 99-419 (420)
42 2pm7_B Protein transport prote 100.0 1.4E-37 5E-42 290.8 33.7 258 182-444 4-293 (297)
43 2pm9_A Protein WEB1, protein t 100.0 2E-38 6.7E-43 311.1 28.1 289 188-486 13-340 (416)
44 3frx_A Guanine nucleotide-bind 100.0 7.1E-37 2.4E-41 289.1 37.1 243 183-435 61-317 (319)
45 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.9E-37 2E-41 293.0 36.9 260 220-485 6-285 (345)
46 4gga_A P55CDC, cell division c 100.0 8.6E-37 2.9E-41 300.1 38.8 276 189-485 107-397 (420)
47 3vl1_A 26S proteasome regulato 100.0 1.4E-38 4.7E-43 312.7 25.9 284 188-486 57-368 (420)
48 3f3f_A Nucleoporin SEH1; struc 100.0 6.2E-37 2.1E-41 292.2 35.3 297 181-485 5-339 (351)
49 3dw8_B Serine/threonine-protei 100.0 3.2E-37 1.1E-41 305.5 34.4 290 185-482 26-445 (447)
50 4a11_B DNA excision repair pro 100.0 2E-36 6.9E-41 295.6 38.2 291 181-486 37-368 (408)
51 4ery_A WD repeat-containing pr 100.0 3.9E-36 1.3E-40 283.2 38.3 254 219-485 13-270 (312)
52 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-36 4.1E-41 324.3 38.5 288 182-485 8-304 (814)
53 3v7d_B Cell division control p 100.0 2E-36 6.7E-41 301.5 37.3 283 183-485 117-423 (464)
54 1yfq_A Cell cycle arrest prote 100.0 1.2E-36 4E-41 290.3 33.7 281 181-481 5-322 (342)
55 4g56_B MGC81050 protein; prote 100.0 4.1E-37 1.4E-41 295.3 30.6 242 184-435 91-343 (357)
56 2pbi_B Guanine nucleotide-bind 100.0 3.2E-36 1.1E-40 288.9 36.7 252 220-485 55-317 (354)
57 4ggc_A P55CDC, cell division c 100.0 8.4E-36 2.9E-40 281.3 38.5 277 190-486 28-318 (318)
58 2pm7_B Protein transport prote 100.0 2.4E-36 8.3E-41 282.5 34.5 252 223-483 3-285 (297)
59 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-36 7.6E-41 298.6 35.8 282 182-486 128-417 (435)
60 4h5i_A Guanine nucleotide-exch 100.0 7.6E-36 2.6E-40 287.3 37.0 284 188-486 15-346 (365)
61 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-37 4.5E-42 311.5 24.9 288 184-484 204-518 (524)
62 3bg1_A Protein SEC13 homolog; 100.0 1.2E-36 4.2E-41 287.1 29.4 259 182-446 8-303 (316)
63 3sfz_A APAF-1, apoptotic pepti 100.0 6.6E-36 2.3E-40 332.7 39.9 286 183-483 611-913 (1249)
64 2xzm_R RACK1; ribosome, transl 100.0 2.1E-35 7.2E-40 282.1 37.6 246 182-435 71-340 (343)
65 1erj_A Transcriptional repress 100.0 2.3E-35 7.8E-40 287.2 37.7 242 187-434 123-388 (393)
66 1pgu_A Actin interacting prote 100.0 2.3E-35 8E-40 304.1 39.6 291 182-483 155-614 (615)
67 2hes_X YDR267CP; beta-propelle 100.0 9.4E-36 3.2E-40 282.8 33.8 242 185-433 56-326 (330)
68 3iz6_a 40S ribosomal protein R 100.0 1.5E-36 5E-41 294.3 27.9 264 213-485 50-331 (380)
69 3sfz_A APAF-1, apoptotic pepti 100.0 2E-35 6.7E-40 328.9 39.8 293 184-485 654-1036(1249)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-34 6.4E-39 285.7 41.3 275 183-485 114-393 (445)
71 3mmy_A MRNA export factor; mRN 100.0 4E-35 1.4E-39 282.1 35.4 287 181-485 33-348 (368)
72 2aq5_A Coronin-1A; WD40 repeat 100.0 6E-36 2.1E-40 292.3 29.1 288 189-484 36-343 (402)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.8E-34 9.4E-39 284.5 40.9 278 183-484 155-443 (445)
74 2oaj_A Protein SNI1; WD40 repe 100.0 7.6E-35 2.6E-39 310.9 38.1 208 183-398 13-247 (902)
75 3bg1_A Protein SEC13 homolog; 100.0 3.5E-36 1.2E-40 284.0 24.5 249 224-482 8-292 (316)
76 3v7d_B Cell division control p 100.0 4.6E-34 1.6E-38 284.4 40.6 280 183-481 158-461 (464)
77 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-34 7.4E-39 306.9 39.8 292 183-483 51-386 (814)
78 3jrp_A Fusion protein of prote 100.0 6E-35 2E-39 282.2 31.9 250 182-435 6-287 (379)
79 1pgu_A Actin interacting prote 100.0 1.7E-34 5.7E-39 297.7 36.8 288 182-483 13-328 (615)
80 2oaj_A Protein SNI1; WD40 repe 100.0 8E-35 2.7E-39 310.7 34.3 292 186-484 97-606 (902)
81 3lrv_A PRE-mRNA-splicing facto 100.0 2.5E-35 8.5E-40 281.6 27.3 271 194-483 43-333 (343)
82 3dm0_A Maltose-binding peripla 100.0 2.5E-34 8.7E-39 300.6 34.7 245 183-433 426-691 (694)
83 3jrp_A Fusion protein of prote 100.0 3.8E-34 1.3E-38 276.6 32.7 259 220-483 2-287 (379)
84 3gre_A Serine/threonine-protei 100.0 4.3E-35 1.5E-39 289.5 25.4 276 195-485 35-361 (437)
85 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.1E-34 2.4E-38 281.9 33.9 288 188-484 5-392 (450)
86 3k26_A Polycomb protein EED; W 100.0 3.4E-34 1.2E-38 275.5 26.8 244 185-433 67-364 (366)
87 4aez_A CDC20, WD repeat-contai 100.0 6.1E-33 2.1E-37 270.9 35.3 242 184-435 131-380 (401)
88 1k8k_C P40, ARP2/3 complex 41 100.0 3.8E-33 1.3E-37 269.1 31.3 246 225-483 4-274 (372)
89 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-34 4.4E-39 289.8 21.0 269 186-484 132-429 (524)
90 3ei3_B DNA damage-binding prot 100.0 4.1E-33 1.4E-37 270.4 30.8 262 214-485 58-341 (383)
91 1sq9_A Antiviral protein SKI8; 100.0 5.8E-33 2E-37 270.4 31.1 249 184-435 59-395 (397)
92 1r5m_A SIR4-interacting protei 100.0 2.2E-32 7.6E-37 268.3 33.9 241 186-433 107-423 (425)
93 3zwl_B Eukaryotic translation 100.0 8.1E-32 2.8E-36 259.1 36.8 248 220-485 23-306 (369)
94 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-33 5.7E-38 275.2 24.8 264 187-482 15-296 (588)
95 2xyi_A Probable histone-bindin 100.0 1.7E-32 5.8E-37 270.2 32.1 257 223-483 122-410 (430)
96 3dwl_C Actin-related protein 2 100.0 5.7E-34 1.9E-38 275.7 21.1 246 225-482 7-280 (377)
97 4e54_B DNA damage-binding prot 100.0 5.8E-33 2E-37 274.0 28.7 254 223-485 113-389 (435)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 7.2E-33 2.5E-37 270.5 28.9 247 182-435 76-342 (402)
99 3dw8_B Serine/threonine-protei 100.0 7.2E-33 2.5E-37 274.2 29.3 254 228-485 27-375 (447)
100 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-32 4.5E-37 263.8 30.2 281 184-485 16-338 (355)
101 3jro_A Fusion protein of prote 100.0 2.9E-33 1E-37 294.4 26.3 249 182-434 4-284 (753)
102 1yfq_A Cell cycle arrest prote 100.0 1.4E-32 4.7E-37 262.1 28.4 255 223-485 5-284 (342)
103 3i2n_A WD repeat-containing pr 100.0 1.3E-32 4.5E-37 263.7 28.1 240 185-434 63-352 (357)
104 4aow_A Guanine nucleotide-bind 100.0 3.3E-31 1.1E-35 252.2 37.7 246 183-436 82-338 (340)
105 4gga_A P55CDC, cell division c 100.0 4.4E-32 1.5E-36 266.5 32.4 243 184-434 144-394 (420)
106 3bws_A Protein LP49; two-domai 100.0 8.3E-32 2.9E-36 265.5 34.3 276 188-483 123-432 (433)
107 2xyi_A Probable histone-bindin 100.0 3.2E-32 1.1E-36 268.2 28.7 247 184-435 125-410 (430)
108 3jro_A Fusion protein of prote 100.0 2.1E-32 7.2E-37 287.9 29.1 256 222-484 2-286 (753)
109 3odt_A Protein DOA1; ubiquitin 100.0 7.8E-31 2.7E-35 246.5 34.3 243 219-485 8-257 (313)
110 1l0q_A Surface layer protein; 100.0 2.5E-30 8.5E-35 251.4 37.6 263 200-484 3-276 (391)
111 4a11_B DNA excision repair pro 100.0 4.5E-30 1.5E-34 250.6 34.0 285 184-483 96-405 (408)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-30 1.4E-34 254.7 33.3 247 184-438 99-394 (450)
113 4gq1_A NUP37; propeller, trans 100.0 3.3E-31 1.1E-35 257.7 24.9 244 185-433 87-387 (393)
114 1p22_A F-BOX/WD-repeat protein 100.0 2.3E-30 7.8E-35 255.5 31.2 235 182-435 168-414 (435)
115 3mmy_A MRNA export factor; mRN 100.0 6.7E-30 2.3E-34 245.6 32.7 262 213-485 23-306 (368)
116 4ggc_A P55CDC, cell division c 100.0 7E-30 2.4E-34 240.6 31.8 242 184-433 64-313 (318)
117 4h5i_A Guanine nucleotide-exch 100.0 1.7E-30 5.8E-35 249.9 27.4 205 185-393 131-343 (365)
118 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-31 7.5E-36 260.3 20.8 249 185-471 83-349 (588)
119 4gq1_A NUP37; propeller, trans 100.0 2.7E-30 9.1E-35 251.3 23.7 233 237-481 97-387 (393)
120 1l0q_A Surface layer protein; 100.0 1.1E-27 3.7E-32 232.8 38.0 279 188-485 32-344 (391)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-29 3.9E-34 242.3 22.5 232 237-485 44-294 (343)
122 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-28 9.3E-33 232.2 29.1 216 183-401 53-345 (351)
123 2w18_A PALB2, fancn, partner a 100.0 2.8E-28 9.5E-33 224.2 26.8 275 190-481 42-355 (356)
124 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-28 1.1E-32 233.2 28.4 247 213-485 3-273 (355)
125 2w18_A PALB2, fancn, partner a 100.0 2.9E-28 9.8E-33 224.1 24.1 201 186-391 110-355 (356)
126 3bws_A Protein LP49; two-domai 100.0 6.1E-27 2.1E-31 230.7 34.3 279 187-485 60-392 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.6E-26 5.6E-31 226.0 30.7 276 188-485 63-389 (415)
128 3u4y_A Uncharacterized protein 99.9 1.6E-24 5.5E-29 205.3 36.3 276 194-484 4-305 (331)
129 1nir_A Nitrite reductase; hemo 99.9 1.9E-25 6.5E-30 225.2 30.7 285 194-487 144-462 (543)
130 1nir_A Nitrite reductase; hemo 99.9 9E-25 3.1E-29 220.3 34.2 283 190-485 181-516 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 3.3E-25 1.1E-29 233.5 30.4 286 187-483 36-413 (741)
132 1ri6_A Putative isomerase YBHE 99.9 1.1E-24 3.9E-29 207.0 30.9 271 201-482 7-307 (343)
133 3vgz_A Uncharacterized protein 99.9 1.3E-23 4.4E-28 200.8 36.9 267 188-474 41-335 (353)
134 1pby_B Quinohemoprotein amine 99.9 2.1E-24 7.2E-29 204.7 27.9 266 200-485 2-312 (337)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-23 4.8E-28 205.1 32.5 247 199-466 143-411 (415)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-24 3.6E-29 229.1 23.7 289 189-483 18-393 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 9.6E-24 3.3E-28 221.1 30.2 280 188-485 82-437 (706)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-23 3.6E-28 206.8 27.9 290 187-483 36-405 (434)
139 2ojh_A Uncharacterized protein 99.9 1.2E-23 4.1E-28 195.2 26.9 253 204-474 17-293 (297)
140 1ri6_A Putative isomerase YBHE 99.9 5.4E-23 1.8E-27 195.5 29.1 270 186-465 36-335 (343)
141 3hfq_A Uncharacterized protein 99.9 4.6E-22 1.6E-26 189.8 33.9 270 208-482 15-316 (347)
142 2ecf_A Dipeptidyl peptidase IV 99.9 2.5E-23 8.7E-28 219.2 26.7 277 189-483 110-459 (741)
143 2ojh_A Uncharacterized protein 99.9 3.3E-23 1.1E-27 192.3 22.8 233 185-427 39-292 (297)
144 1k32_A Tricorn protease; prote 99.9 1.8E-22 6.2E-27 220.2 30.9 277 187-485 295-639 (1045)
145 1k32_A Tricorn protease; prote 99.9 5.6E-22 1.9E-26 216.3 29.9 274 184-482 200-501 (1045)
146 3o4h_A Acylamino-acid-releasin 99.9 2.2E-22 7.6E-27 205.9 24.5 267 187-483 21-315 (582)
147 3u4y_A Uncharacterized protein 99.9 1.9E-21 6.5E-26 184.1 28.5 240 187-433 40-302 (331)
148 2z3z_A Dipeptidyl aminopeptida 99.9 5.8E-22 2E-26 207.6 27.1 280 190-485 28-393 (706)
149 3scy_A Hypothetical bacterial 99.9 9.6E-21 3.3E-25 181.7 33.3 279 199-482 13-336 (361)
150 3hfq_A Uncharacterized protein 99.9 5.4E-21 1.8E-25 182.4 31.2 245 188-437 40-319 (347)
151 1jmx_B Amine dehydrogenase; ox 99.9 1.4E-21 4.7E-26 186.3 26.1 277 192-485 4-327 (349)
152 3vgz_A Uncharacterized protein 99.9 1.3E-20 4.4E-25 179.8 31.2 230 189-427 90-334 (353)
153 3scy_A Hypothetical bacterial 99.9 6E-20 2E-24 176.1 33.8 264 186-461 48-360 (361)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-21 5.2E-26 191.5 22.8 217 209-436 23-279 (434)
155 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-21 6.5E-26 204.3 24.3 274 189-471 62-428 (723)
156 1z68_A Fibroblast activation p 99.9 1.6E-21 5.3E-26 204.8 22.2 278 192-483 20-391 (719)
157 1pby_B Quinohemoprotein amine 99.9 2.2E-20 7.4E-25 176.9 23.0 239 189-447 35-318 (337)
158 3pe7_A Oligogalacturonate lyas 99.9 6.7E-20 2.3E-24 177.5 24.6 276 193-483 41-382 (388)
159 1z68_A Fibroblast activation p 99.9 3.7E-20 1.3E-24 194.3 23.6 286 189-485 61-445 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.2E-19 1.4E-23 170.5 26.3 276 201-484 4-342 (365)
161 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-18 3.8E-23 183.4 28.3 240 188-434 17-350 (740)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 3E-18 1E-22 164.5 27.4 244 188-435 40-341 (365)
163 3o4h_A Acylamino-acid-releasin 99.8 2.3E-19 7.7E-24 183.6 19.3 229 229-481 21-274 (582)
164 1q7f_A NHL, brain tumor CG1071 99.8 5.9E-17 2E-21 149.8 32.1 242 227-485 27-282 (286)
165 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-17 1.2E-21 154.7 30.1 244 187-434 23-321 (329)
166 3c5m_A Oligogalacturonate lyas 99.8 8.3E-19 2.8E-23 170.1 18.6 277 189-481 37-380 (396)
167 2oiz_A Aromatic amine dehydrog 99.8 2.7E-17 9.1E-22 157.3 27.6 256 207-484 29-335 (361)
168 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-17 5.3E-22 158.1 25.6 238 189-447 44-333 (349)
169 1q7f_A NHL, brain tumor CG1071 99.8 2.2E-16 7.6E-21 145.9 32.4 238 185-433 27-278 (286)
170 3azo_A Aminopeptidase; POP fam 99.8 3.9E-17 1.3E-21 169.6 29.3 288 184-484 20-370 (662)
171 4a5s_A Dipeptidyl peptidase 4 99.8 2.6E-17 9E-22 172.9 27.3 284 191-484 65-450 (740)
172 2dg1_A DRP35, lactonase; beta 99.8 1.1E-16 3.7E-21 151.5 28.6 272 188-474 6-301 (333)
173 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-16 3.7E-21 151.3 27.2 247 229-484 23-323 (329)
174 3pe7_A Oligogalacturonate lyas 99.8 3.3E-17 1.1E-21 158.4 22.9 264 212-485 13-331 (388)
175 2z2n_A Virginiamycin B lyase; 99.8 1.8E-14 6.1E-19 133.7 39.4 278 187-484 14-296 (299)
176 2oiz_A Aromatic amine dehydrog 99.8 9.1E-16 3.1E-20 146.7 29.4 258 192-465 54-360 (361)
177 2gop_A Trilobed protease; beta 99.8 1E-15 3.5E-20 145.6 29.7 254 189-482 16-330 (347)
178 3e5z_A Putative gluconolactona 99.8 1.7E-15 5.8E-20 140.8 29.8 232 187-434 27-283 (296)
179 3e5z_A Putative gluconolactona 99.8 1.4E-15 4.7E-20 141.4 29.1 246 220-484 18-287 (296)
180 3dsm_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 140.6 31.9 264 207-482 15-301 (328)
181 3no2_A Uncharacterized protein 99.7 2.1E-15 7.3E-20 138.2 29.2 250 198-459 4-272 (276)
182 2dg1_A DRP35, lactonase; beta 99.7 1.4E-14 5E-19 136.8 34.1 239 186-435 43-314 (333)
183 1qks_A Cytochrome CD1 nitrite 99.7 3.4E-14 1.2E-18 142.8 37.5 286 189-485 198-540 (567)
184 3azo_A Aminopeptidase; POP fam 99.7 6.1E-16 2.1E-20 160.6 25.0 235 192-435 81-367 (662)
185 2xdw_A Prolyl endopeptidase; a 99.7 3.2E-15 1.1E-19 156.3 30.1 277 197-485 81-416 (710)
186 2xdw_A Prolyl endopeptidase; a 99.7 3.8E-15 1.3E-19 155.8 29.1 242 184-434 121-411 (710)
187 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-14 9.9E-19 143.3 33.0 281 196-484 164-478 (567)
188 1rwi_B Serine/threonine-protei 99.7 1E-14 3.6E-19 133.3 26.9 233 189-433 25-262 (270)
189 3c5m_A Oligogalacturonate lyas 99.7 7.7E-16 2.6E-20 149.1 19.5 255 212-485 13-331 (396)
190 2qc5_A Streptogramin B lactona 99.7 5.1E-13 1.7E-17 123.8 37.1 275 187-481 19-298 (300)
191 3dsm_A Uncharacterized protein 99.7 6.8E-14 2.3E-18 131.9 31.3 231 189-433 45-300 (328)
192 2bkl_A Prolyl endopeptidase; m 99.7 3.9E-15 1.3E-19 155.2 24.9 274 197-485 77-399 (695)
193 2gop_A Trilobed protease; beta 99.7 1.8E-14 6.1E-19 136.9 25.9 220 188-434 59-330 (347)
194 2mad_H Methylamine dehydrogena 99.7 5.4E-13 1.8E-17 127.6 35.9 267 196-485 29-352 (373)
195 3sjl_D Methylamine dehydrogena 99.7 3E-14 1E-18 134.5 26.6 272 195-485 40-365 (386)
196 1rwi_B Serine/threonine-protei 99.7 2.8E-14 9.6E-19 130.4 24.7 238 231-485 25-266 (270)
197 2bkl_A Prolyl endopeptidase; m 99.6 3.7E-14 1.3E-18 147.8 24.7 231 184-425 117-381 (695)
198 3no2_A Uncharacterized protein 99.6 1.1E-13 3.7E-18 126.8 24.8 214 240-470 4-230 (276)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.9E-13 3E-17 123.2 30.4 231 189-433 19-297 (314)
200 2z2n_A Virginiamycin B lyase; 99.6 7.6E-12 2.6E-16 115.8 34.9 234 187-433 56-293 (299)
201 3c75_H MADH, methylamine dehyd 99.6 4E-13 1.4E-17 129.2 26.2 267 198-485 83-404 (426)
202 1yr2_A Prolyl oligopeptidase; 99.6 2.5E-13 8.6E-18 142.6 25.7 274 197-485 116-443 (741)
203 1xip_A Nucleoporin NUP159; bet 99.6 6.4E-14 2.2E-18 132.9 17.5 171 189-381 39-231 (388)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 3.1E-12 1E-16 119.5 28.3 241 229-484 17-300 (314)
205 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-12 3.8E-17 137.7 25.4 228 186-424 161-424 (741)
206 3sjl_D Methylamine dehydrogena 99.5 2.3E-12 8E-17 121.6 24.6 254 192-463 82-384 (386)
207 3hrp_A Uncharacterized protein 99.5 1.6E-11 5.5E-16 119.0 31.0 239 188-431 131-404 (409)
208 2qc5_A Streptogramin B lactona 99.5 7.5E-11 2.6E-15 109.1 33.7 233 187-433 61-296 (300)
209 3g4e_A Regucalcin; six bladed 99.5 1.9E-11 6.4E-16 113.4 28.7 224 189-426 14-261 (297)
210 2ghs_A AGR_C_1268P; regucalcin 99.5 7.9E-11 2.7E-15 110.7 31.6 222 190-427 51-292 (326)
211 3dr2_A Exported gluconolactona 99.5 1.1E-11 3.8E-16 115.4 25.2 223 189-427 46-297 (305)
212 3dr2_A Exported gluconolactona 99.5 1.3E-11 4.6E-16 114.8 25.6 236 225-480 40-303 (305)
213 2mad_H Methylamine dehydrogena 99.5 2.2E-10 7.6E-15 109.4 33.9 238 192-445 70-356 (373)
214 3hrp_A Uncharacterized protein 99.5 1E-10 3.5E-15 113.3 30.5 239 230-481 131-408 (409)
215 3g4e_A Regucalcin; six bladed 99.4 1.8E-10 6.3E-15 106.7 30.1 228 228-471 11-260 (297)
216 1xip_A Nucleoporin NUP159; bet 99.4 8.2E-12 2.8E-16 118.4 16.9 176 231-425 39-232 (388)
217 3c75_H MADH, methylamine dehyd 99.4 7E-11 2.4E-15 113.6 23.4 240 192-446 122-409 (426)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 1.4E-09 4.7E-14 102.2 31.7 223 232-472 51-291 (326)
219 3iuj_A Prolyl endopeptidase; h 99.4 8.1E-11 2.8E-15 122.4 25.5 240 184-435 125-403 (693)
220 1mda_H Methylamine dehydrogena 99.4 1.3E-11 4.3E-16 116.9 17.2 248 210-485 47-348 (368)
221 3iuj_A Prolyl endopeptidase; h 99.3 9.5E-11 3.2E-15 121.9 23.0 240 227-485 126-407 (693)
222 2qe8_A Uncharacterized protein 99.3 4.9E-10 1.7E-14 106.0 25.3 241 230-476 17-314 (343)
223 2qe8_A Uncharacterized protein 99.3 3.1E-10 1.1E-14 107.4 22.9 235 188-427 17-311 (343)
224 2ece_A 462AA long hypothetical 99.3 5.3E-09 1.8E-13 99.5 30.4 229 239-471 93-399 (462)
225 1kb0_A Quinohemoprotein alcoho 99.3 5.4E-10 1.9E-14 115.3 24.5 274 199-485 77-509 (677)
226 2ece_A 462AA long hypothetical 99.3 4.6E-09 1.6E-13 99.9 28.3 222 197-425 93-399 (462)
227 1yiq_A Quinohemoprotein alcoho 99.3 9.9E-10 3.4E-14 113.6 25.7 273 199-485 70-507 (689)
228 2hz6_A Endoplasmic reticulum t 99.3 1.5E-12 5E-17 124.7 4.1 254 198-482 8-278 (369)
229 1kb0_A Quinohemoprotein alcoho 99.3 1.5E-09 5.2E-14 112.0 26.5 274 198-483 127-567 (677)
230 1fwx_A Nitrous oxide reductase 99.2 7E-10 2.4E-14 109.2 20.9 271 201-485 17-433 (595)
231 3hxj_A Pyrrolo-quinoline quino 99.2 4.5E-10 1.6E-14 105.5 18.5 266 189-485 61-326 (330)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.3E-08 7.9E-13 95.8 29.4 267 198-485 52-339 (376)
233 3hxj_A Pyrrolo-quinoline quino 99.2 5.8E-10 2E-14 104.7 17.8 255 195-481 27-282 (330)
234 1yiq_A Quinohemoprotein alcoho 99.2 9.2E-09 3.1E-13 106.4 27.0 258 199-468 121-533 (689)
235 1mda_H Methylamine dehydrogena 99.2 8.2E-10 2.8E-14 104.4 16.4 245 192-462 69-366 (368)
236 2iwa_A Glutamine cyclotransfer 99.1 1.8E-08 6.2E-13 90.1 23.6 198 189-394 22-238 (266)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.2E-07 4.1E-12 90.7 30.3 261 198-480 102-375 (376)
238 4a2l_A BT_4663, two-component 99.1 1.4E-06 4.9E-11 92.0 39.7 286 187-483 262-571 (795)
239 2iwa_A Glutamine cyclotransfer 99.1 1E-07 3.5E-12 85.2 25.7 200 220-433 10-233 (266)
240 3nol_A Glutamine cyclotransfer 99.1 6.4E-08 2.2E-12 85.4 23.8 199 220-433 32-252 (262)
241 1fwx_A Nitrous oxide reductase 99.1 9.3E-09 3.2E-13 101.3 20.4 219 197-426 99-407 (595)
242 1npe_A Nidogen, entactin; glyc 99.1 6.1E-07 2.1E-11 81.3 30.9 248 200-465 2-263 (267)
243 4a2l_A BT_4663, two-component 99.1 1.9E-06 6.5E-11 91.0 38.8 282 187-482 309-613 (795)
244 3nol_A Glutamine cyclotransfer 99.0 5.6E-08 1.9E-12 85.8 21.7 190 186-384 41-245 (262)
245 2fp8_A Strictosidine synthase; 99.0 1.5E-07 5.2E-12 88.0 25.5 247 231-487 20-317 (322)
246 1npe_A Nidogen, entactin; glyc 99.0 8.8E-07 3E-11 80.3 29.0 219 189-419 37-263 (267)
247 3nok_A Glutaminyl cyclase; bet 99.0 1.9E-07 6.4E-12 82.4 22.9 197 220-433 44-262 (268)
248 2p4o_A Hypothetical protein; p 99.0 1.5E-06 5.3E-11 80.4 30.7 235 219-473 22-278 (306)
249 1kv9_A Type II quinohemoprotei 99.0 1.6E-07 5.6E-12 96.7 26.1 195 199-400 66-340 (668)
250 2xbg_A YCF48-like protein; pho 99.0 4.9E-06 1.7E-10 77.7 33.4 277 187-481 35-320 (327)
251 3mbr_X Glutamine cyclotransfer 98.9 6.5E-07 2.2E-11 78.3 24.6 199 220-433 10-231 (243)
252 2fp8_A Strictosidine synthase; 98.9 1.3E-06 4.5E-11 81.5 28.7 232 190-433 21-311 (322)
253 2hz6_A Endoplasmic reticulum t 98.9 3.2E-10 1.1E-14 108.4 2.5 176 240-433 8-190 (369)
254 3mbr_X Glutamine cyclotransfer 98.9 1.3E-06 4.6E-11 76.3 25.2 189 187-384 20-224 (243)
255 3nok_A Glutaminyl cyclase; bet 98.9 4.3E-07 1.5E-11 80.1 21.7 188 187-384 54-255 (268)
256 3v9f_A Two-component system se 98.9 9.3E-06 3.2E-10 85.6 35.6 278 187-482 312-610 (781)
257 3v9f_A Two-component system se 98.9 9.2E-06 3.1E-10 85.6 35.4 286 187-484 257-569 (781)
258 1kv9_A Type II quinohemoprotei 98.9 1.1E-06 3.6E-11 90.6 27.5 238 199-447 117-496 (668)
259 1k3i_A Galactose oxidase precu 98.8 1.7E-07 5.7E-12 96.7 19.9 269 192-472 190-530 (656)
260 2ad6_A Methanol dehydrogenase 98.8 2E-06 6.7E-11 86.8 27.1 196 199-402 62-344 (571)
261 1w6s_A Methanol dehydrogenase 98.8 8.6E-06 2.9E-10 82.2 30.7 197 199-401 62-350 (599)
262 2p4o_A Hypothetical protein; p 98.8 1.8E-05 6.1E-10 73.2 29.9 229 189-427 33-278 (306)
263 1w6s_A Methanol dehydrogenase 98.7 5.9E-06 2E-10 83.3 26.9 154 202-360 124-350 (599)
264 2ad6_A Methanol dehydrogenase 98.7 4.8E-06 1.6E-10 84.0 25.6 259 199-469 115-523 (571)
265 2xe4_A Oligopeptidase B; hydro 98.7 7.7E-06 2.6E-10 85.6 27.2 194 189-391 175-398 (751)
266 3qqz_A Putative uncharacterize 98.7 3.6E-05 1.2E-09 68.3 26.4 207 180-390 20-250 (255)
267 1flg_A Protein (quinoprotein e 98.6 2E-05 6.8E-10 79.6 27.9 198 199-402 68-364 (582)
268 1flg_A Protein (quinoprotein e 98.6 1.7E-05 5.7E-10 80.2 27.2 159 199-360 117-363 (582)
269 3v64_C Agrin; beta propeller, 98.6 0.00037 1.3E-08 65.5 33.0 232 188-434 34-272 (349)
270 3qqz_A Putative uncharacterize 98.6 0.00014 4.8E-09 64.5 27.9 204 269-481 21-251 (255)
271 1ijq_A LDL receptor, low-densi 98.6 0.00048 1.6E-08 63.8 33.2 219 251-484 10-239 (316)
272 3tc9_A Hypothetical hydrolase; 98.5 4.9E-05 1.7E-09 73.8 26.1 152 231-392 138-300 (430)
273 3tc9_A Hypothetical hydrolase; 98.5 0.00011 3.6E-09 71.4 28.5 155 189-351 138-300 (430)
274 1k3i_A Galactose oxidase precu 98.5 1.1E-05 3.7E-10 83.2 22.4 243 234-484 190-498 (656)
275 2xe4_A Oligopeptidase B; hydro 98.5 3.4E-05 1.2E-09 80.7 26.4 193 231-434 175-397 (751)
276 3amr_A 3-phytase; beta-propell 98.5 6.5E-05 2.2E-09 69.2 24.1 194 198-402 39-273 (355)
277 1ijq_A LDL receptor, low-densi 98.5 0.00074 2.5E-08 62.5 31.7 216 209-434 10-235 (316)
278 3v64_C Agrin; beta propeller, 98.5 0.00026 9E-09 66.6 28.5 204 189-401 74-283 (349)
279 4hw6_A Hypothetical protein, I 98.5 0.00022 7.7E-09 69.1 28.7 235 189-432 140-430 (433)
280 3v65_B Low-density lipoprotein 98.5 0.00049 1.7E-08 65.7 30.6 222 243-481 89-316 (386)
281 3p5b_L Low density lipoprotein 98.4 0.0014 4.7E-08 62.9 34.0 225 200-433 84-316 (400)
282 3p5b_L Low density lipoprotein 98.4 0.00073 2.5E-08 64.8 31.5 227 243-484 85-321 (400)
283 4hw6_A Hypothetical protein, I 98.4 0.00016 5.5E-09 70.1 26.5 237 231-482 140-432 (433)
284 3v65_B Low-density lipoprotein 98.4 0.00025 8.5E-09 67.8 27.4 206 188-402 116-327 (386)
285 3kya_A Putative phosphatase; s 98.4 0.0002 6.7E-09 69.8 26.7 243 232-488 141-480 (496)
286 3sre_A PON1, serum paraoxonase 98.4 5.2E-05 1.8E-09 70.8 20.5 170 249-427 81-287 (355)
287 2p9w_A MAL S 1 allergenic prot 98.3 0.0005 1.7E-08 62.7 24.9 202 191-393 16-265 (334)
288 3sov_A LRP-6, low-density lipo 98.3 0.0014 4.8E-08 60.6 28.5 223 250-485 12-240 (318)
289 3amr_A 3-phytase; beta-propell 98.3 0.00026 8.9E-09 65.2 22.7 186 285-482 39-262 (355)
290 3sov_A LRP-6, low-density lipo 98.3 0.001 3.4E-08 61.6 27.1 205 189-402 36-247 (318)
291 3s94_A LRP-6, low-density lipo 98.2 0.0074 2.5E-07 61.2 35.4 284 188-484 84-424 (619)
292 3s94_A LRP-6, low-density lipo 98.2 0.008 2.7E-07 61.0 34.6 198 188-395 40-245 (619)
293 3kya_A Putative phosphatase; s 98.2 0.0019 6.7E-08 62.8 27.7 159 189-351 140-340 (496)
294 2ism_A Putative oxidoreductase 98.2 0.00057 2E-08 64.3 23.2 224 189-426 32-334 (352)
295 3m0c_C LDL receptor, low-densi 98.2 0.0051 1.7E-07 64.1 32.0 219 208-434 403-629 (791)
296 2xbg_A YCF48-like protein; pho 98.1 0.0031 1E-07 58.6 27.8 231 188-433 80-318 (327)
297 3m0c_C LDL receptor, low-densi 98.1 0.0056 1.9E-07 63.7 31.9 220 249-483 402-632 (791)
298 2ism_A Putative oxidoreductase 98.1 0.0043 1.5E-07 58.2 28.3 229 230-471 31-333 (352)
299 3ii7_A Kelch-like protein 7; p 98.1 0.0025 8.4E-08 58.5 25.9 235 200-448 13-283 (306)
300 2vpj_A Kelch-like protein 12; 98.1 0.0013 4.6E-08 60.1 24.0 236 198-446 14-287 (301)
301 3a9g_A Putative uncharacterize 98.1 0.0076 2.6E-07 56.5 29.6 229 230-471 29-330 (354)
302 2p9w_A MAL S 1 allergenic prot 98.0 0.0033 1.1E-07 57.4 24.6 163 229-394 12-216 (334)
303 3ott_A Two-component system se 98.0 0.02 7E-07 59.8 34.4 277 188-482 63-351 (758)
304 3a9g_A Putative uncharacterize 98.0 0.006 2E-07 57.3 26.7 227 189-425 30-330 (354)
305 3ii7_A Kelch-like protein 7; p 98.0 0.0028 9.5E-08 58.2 23.3 227 242-484 13-273 (306)
306 3ei3_A DNA damage-binding prot 98.0 0.038 1.3E-06 60.2 36.2 226 244-484 709-1000(1158)
307 1zgk_A Kelch-like ECH-associat 97.9 0.0048 1.6E-07 56.7 23.8 237 197-447 23-297 (308)
308 2xn4_A Kelch-like protein 2; s 97.9 0.0051 1.7E-07 56.3 23.4 232 199-444 16-283 (302)
309 1n7d_A LDL receptor, low-densi 97.9 7.6E-05 2.6E-09 77.1 12.0 217 208-432 385-611 (699)
310 3sre_A PON1, serum paraoxonase 97.8 0.0063 2.2E-07 56.7 23.2 194 189-391 51-296 (355)
311 2vpj_A Kelch-like protein 12; 97.8 0.0035 1.2E-07 57.3 21.4 229 240-484 14-279 (301)
312 2g8s_A Glucose/sorbosone dehyd 97.8 0.027 9.1E-07 52.8 28.2 150 230-381 18-215 (353)
313 1n7d_A LDL receptor, low-densi 97.7 0.00022 7.4E-09 73.7 13.0 219 250-482 385-613 (699)
314 4a0p_A LRP6, LRP-6, low-densit 97.7 0.05 1.7E-06 55.2 37.5 197 188-395 37-239 (628)
315 2xn4_A Kelch-like protein 2; s 97.7 0.007 2.4E-07 55.3 22.0 228 241-484 16-277 (302)
316 2g8s_A Glucose/sorbosone dehyd 97.6 0.018 6.3E-07 53.9 23.6 237 189-433 19-350 (353)
317 4asc_A Kelch repeat and BTB do 97.6 0.013 4.5E-07 53.8 22.4 225 243-484 7-278 (315)
318 3ei3_A DNA damage-binding prot 97.6 0.12 4.2E-06 56.2 37.5 280 187-484 553-914 (1158)
319 1zgk_A Kelch-like ECH-associat 97.6 0.014 4.6E-07 53.6 21.8 229 240-484 24-288 (308)
320 3ott_A Two-component system se 97.6 0.11 3.8E-06 54.1 34.1 286 189-483 192-502 (758)
321 4a0p_A LRP6, LRP-6, low-densit 97.5 0.1 3.5E-06 52.9 32.8 225 243-484 8-238 (628)
322 4asc_A Kelch repeat and BTB do 97.4 0.068 2.3E-06 49.0 27.0 229 201-443 7-283 (315)
323 2woz_A Kelch repeat and BTB do 97.4 0.063 2.2E-06 49.3 24.0 225 243-484 18-288 (318)
324 2uvk_A YJHT; unknown function, 97.3 0.031 1.1E-06 52.3 21.0 239 198-448 19-353 (357)
325 2uvk_A YJHT; unknown function, 97.3 0.067 2.3E-06 50.0 23.1 233 240-485 19-344 (357)
326 3pbp_A Nucleoporin NUP82; beta 97.3 0.032 1.1E-06 52.6 19.8 146 240-388 31-207 (452)
327 1bpo_A Protein (clathrin); cla 97.3 0.13 4.4E-06 48.6 30.9 227 193-433 71-327 (494)
328 1cru_A Protein (soluble quinop 97.2 0.16 5.6E-06 49.1 32.3 109 230-340 27-162 (454)
329 2woz_A Kelch repeat and BTB do 97.2 0.12 4.1E-06 47.4 23.8 184 201-396 18-234 (318)
330 3das_A Putative oxidoreductase 97.2 0.13 4.4E-06 47.7 26.6 231 189-425 33-326 (347)
331 3das_A Putative oxidoreductase 97.2 0.14 4.9E-06 47.4 30.4 232 229-471 31-326 (347)
332 1tl2_A L10, protein (tachylect 97.2 0.018 6.2E-07 49.0 15.3 152 322-484 41-209 (236)
333 2xzh_A Clathrin heavy chain 1; 97.2 0.13 4.6E-06 46.5 27.7 257 208-483 48-332 (365)
334 2xzh_A Clathrin heavy chain 1; 97.1 0.16 5.4E-06 46.1 32.7 225 193-433 72-328 (365)
335 2zwa_A Leucine carboxyl methyl 97.1 0.024 8.3E-07 58.4 18.5 197 197-396 396-638 (695)
336 1tl2_A L10, protein (tachylect 96.9 0.023 8E-07 48.3 13.7 182 241-434 4-207 (236)
337 1bpo_A Protein (clathrin); cla 96.9 0.29 9.9E-06 46.2 28.9 258 208-483 47-331 (494)
338 3sbq_A Nitrous-oxide reductase 96.9 0.37 1.3E-05 47.0 26.2 258 201-471 72-453 (638)
339 3pbp_A Nucleoporin NUP82; beta 96.8 0.056 1.9E-06 50.9 16.4 113 371-483 28-158 (452)
340 1cru_A Protein (soluble quinop 96.4 0.3 1E-05 47.2 19.3 103 322-425 27-162 (454)
341 1xi4_A Clathrin heavy chain; a 96.3 0.23 7.9E-06 54.1 19.1 196 195-402 73-298 (1630)
342 2be1_A Serine/threonine-protei 96.1 0.015 5.1E-07 53.7 8.2 196 199-398 10-236 (339)
343 3s25_A Hypothetical 7-bladed b 96.0 0.85 2.9E-05 41.3 24.5 174 193-393 58-255 (302)
344 2zwa_A Leucine carboxyl methyl 95.8 0.71 2.4E-05 47.4 19.8 198 284-484 396-636 (695)
345 3s25_A Hypothetical 7-bladed b 95.7 1.2 4E-05 40.4 27.9 244 197-483 23-293 (302)
346 2be1_A Serine/threonine-protei 95.6 0.28 9.5E-06 45.2 14.3 116 242-361 11-139 (339)
347 3b7f_A Glycosyl hydrolase, BNR 95.3 2 6.8E-05 40.5 29.2 274 200-478 23-367 (394)
348 3sbq_A Nitrous-oxide reductase 94.8 3.3 0.00011 40.5 21.8 191 285-483 141-408 (638)
349 3q6k_A 43.2 kDa salivary prote 94.8 2.6 9.1E-05 39.3 20.1 192 188-382 87-342 (381)
350 1xi4_A Clathrin heavy chain; a 94.6 1.2 4.1E-05 48.8 17.1 177 189-372 107-309 (1630)
351 3b7f_A Glycosyl hydrolase, BNR 94.3 3.6 0.00012 38.7 27.9 264 188-461 55-391 (394)
352 4hvt_A Ritya.17583.B, post-pro 93.5 7.7 0.00026 39.7 23.9 229 195-435 137-428 (711)
353 2wg3_C Hedgehog-interacting pr 92.4 8.2 0.00028 37.2 28.8 109 230-341 14-158 (463)
354 2wg3_C Hedgehog-interacting pr 92.3 8.5 0.00029 37.1 29.3 244 189-434 15-370 (463)
355 3ra3_A P1C; coiled coil domain 90.7 0.27 9.2E-06 24.5 2.7 24 43-66 1-24 (28)
356 3hnw_A Uncharacterized protein 89.9 1.6 5.3E-05 34.0 8.0 66 36-101 69-134 (138)
357 3cve_A Homer protein homolog 1 89.3 1.9 6.5E-05 28.9 6.9 55 46-100 11-65 (72)
358 3cvf_A Homer-3, homer protein 88.3 2.3 7.8E-05 29.2 6.9 56 45-100 16-71 (79)
359 2lw1_A ABC transporter ATP-bin 88.2 1.9 6.4E-05 30.7 6.9 56 39-96 19-75 (89)
360 2w6b_A RHO guanine nucleotide 88.1 2.7 9.2E-05 26.0 6.3 44 46-100 7-50 (56)
361 4gq2_M Nucleoporin NUP120; bet 87.9 14 0.00047 39.4 16.3 39 276-314 237-275 (950)
362 3qhy_B Beta-lactamase inhibito 86.0 18 0.00061 32.1 17.2 217 189-433 25-242 (282)
363 3q6k_A 43.2 kDa salivary prote 85.8 22 0.00077 33.0 21.7 172 297-471 124-342 (381)
364 1wp5_A Topoisomerase IV; broke 83.9 25 0.00085 31.9 25.8 238 239-482 3-276 (323)
365 3lay_A Zinc resistance-associa 81.8 7.4 0.00025 31.6 8.4 49 50-98 86-134 (175)
366 3qhy_B Beta-lactamase inhibito 81.5 28 0.00095 30.8 17.8 221 231-483 25-246 (282)
367 3no0_A DNA gyrase subunit A; D 80.0 31 0.0011 30.4 23.2 200 186-393 22-246 (276)
368 4h22_A Leucine-rich repeat fli 79.7 13 0.00044 26.8 7.9 65 38-102 19-83 (103)
369 1sqj_A OXG-RCBH, oligoxylogluc 79.6 61 0.0021 33.6 28.0 154 187-342 14-190 (789)
370 3ljm_A Coil Ser L9C; de novo d 79.4 3.1 0.00011 21.3 3.3 25 42-66 1-25 (31)
371 3l6v_A GYRA, DNA gyrase subuni 79.0 41 0.0014 31.2 25.9 150 238-392 4-179 (370)
372 1go4_E MAD1 (mitotic arrest de 78.5 8.1 0.00028 27.8 6.6 36 35-70 12-47 (100)
373 3a7p_A Autophagy protein 16; c 78.4 5.9 0.0002 30.9 6.3 34 56-89 96-129 (152)
374 3uc1_A DNA gyrase subunit A; D 77.3 42 0.0014 30.4 23.8 192 199-393 3-228 (327)
375 1t6f_A Geminin; coiled-coil, c 76.6 6.3 0.00022 21.9 4.3 28 49-90 7-34 (37)
376 4hvt_A Ritya.17583.B, post-pro 75.7 75 0.0025 32.5 20.4 230 237-482 137-429 (711)
377 2cn3_A Xyloglucanase, beta-1,4 75.2 78 0.0027 32.5 28.0 239 231-471 24-320 (737)
378 2yy0_A C-MYC-binding protein; 73.4 5.2 0.00018 25.1 4.0 25 42-66 19-43 (53)
379 3uc1_A DNA gyrase subunit A; D 72.9 55 0.0019 29.7 24.3 199 188-392 42-278 (327)
380 3he5_A Synzip1; heterodimeric 72.7 11 0.00037 21.5 6.1 44 35-92 3-46 (49)
381 1sqj_A OXG-RCBH, oligoxylogluc 70.3 1.1E+02 0.0036 31.8 27.7 241 229-472 14-315 (789)
382 1zvt_A Topoisomerase IV subuni 69.6 55 0.0019 28.4 11.4 143 335-482 4-162 (256)
383 2lf0_A Uncharacterized protein 68.4 13 0.00045 27.3 5.7 48 50-99 11-58 (123)
384 2wt7_B Transcription factor MA 67.4 15 0.00051 25.9 5.7 40 43-96 49-88 (90)
385 2oqq_A Transcription factor HY 66.6 4.1 0.00014 23.6 2.2 8 51-58 33-40 (42)
386 3vp9_A General transcriptional 66.5 8.1 0.00028 27.3 4.2 68 28-101 7-85 (92)
387 4gq2_M Nucleoporin NUP120; bet 66.4 1.4E+02 0.0047 31.7 22.8 38 322-359 236-273 (950)
388 2xv5_A Lamin-A/C; structural p 64.3 21 0.00071 24.2 5.8 58 39-96 2-59 (74)
389 3sja_C Golgi to ER traffic pro 63.9 23 0.00077 23.2 5.6 53 48-102 5-57 (65)
390 2eqb_B RAB guanine nucleotide 63.8 33 0.0011 24.5 6.9 14 87-100 50-63 (97)
391 2dgc_A Protein (GCN4); basic d 63.6 7.4 0.00025 25.4 3.4 30 37-66 32-61 (63)
392 1fmh_A General control protein 63.6 14 0.00047 19.2 4.1 26 39-64 5-30 (33)
393 3hnw_A Uncharacterized protein 63.3 33 0.0011 26.5 7.6 62 41-102 67-128 (138)
394 1zi0_A DNA gyrase subunit A; b 62.9 85 0.0029 28.0 26.1 238 239-482 1-276 (307)
395 3na7_A HP0958; flagellar bioge 62.1 21 0.00072 31.1 7.2 59 41-99 89-147 (256)
396 2jee_A YIIU; FTSZ, septum, coi 62.0 36 0.0012 23.4 6.7 48 50-97 28-75 (81)
397 2wuj_A Septum site-determining 61.5 7.2 0.00025 24.9 3.0 30 35-64 27-56 (57)
398 3zwu_A Alkaline phosphatase PH 61.5 27 0.00094 34.6 8.6 60 324-383 478-550 (592)
399 2wt7_A Proto-oncogene protein 61.4 15 0.00052 23.9 4.6 32 36-67 24-55 (63)
400 3no0_A DNA gyrase subunit A; D 60.5 88 0.003 27.4 22.4 198 274-482 23-245 (276)
401 4fhn_B Nucleoporin NUP120; pro 59.4 72 0.0025 34.7 12.3 39 322-360 238-276 (1139)
402 4fhn_B Nucleoporin NUP120; pro 58.9 95 0.0032 33.8 13.2 39 276-314 239-277 (1139)
403 3sjb_C Golgi to ER traffic pro 56.0 22 0.00074 25.1 4.8 55 46-102 20-74 (93)
404 4a9v_A PHOX; hydrolase, beta-p 55.8 52 0.0018 32.4 9.2 63 322-384 476-551 (592)
405 3etw_A Adhesin A; antiparallel 55.6 37 0.0012 25.4 6.3 57 29-98 3-62 (119)
406 4e61_A Protein BIM1; EB1-like 54.5 37 0.0013 24.7 6.0 22 77-98 32-53 (106)
407 3f7f_A Nucleoporin NUP120; nuc 54.5 61 0.0021 32.9 9.8 37 276-314 223-259 (729)
408 1gd2_E Transcription factor PA 53.9 15 0.00051 24.5 3.6 30 37-66 38-67 (70)
409 1suu_A DNA gyrase subunit A; t 53.7 1.2E+02 0.0042 27.0 29.1 190 197-393 6-231 (312)
410 1t2k_D Cyclic-AMP-dependent tr 52.1 27 0.00092 22.5 4.6 31 37-67 24-54 (61)
411 3l6v_A GYRA, DNA gyrase subuni 51.8 1.5E+02 0.005 27.4 28.2 151 195-351 3-179 (370)
412 1gu4_A CAAT/enhancer binding p 51.4 25 0.00086 24.0 4.5 29 39-67 40-68 (78)
413 1hjb_A Ccaat/enhancer binding 50.8 25 0.00086 24.6 4.5 27 40-66 41-67 (87)
414 4a9v_A PHOX; hydrolase, beta-p 50.6 64 0.0022 31.8 8.9 63 364-427 476-551 (592)
415 3q0x_A Centriole protein; cent 50.6 20 0.00067 30.4 4.7 32 35-66 164-195 (228)
416 3vlc_E Golgi to ER traffic pro 50.6 20 0.00069 25.4 4.0 52 49-102 30-81 (94)
417 1x79_B RAB GTPase binding effe 50.3 73 0.0025 23.4 7.6 34 40-73 4-40 (112)
418 3zwu_A Alkaline phosphatase PH 48.4 59 0.002 32.3 8.5 60 365-425 477-549 (592)
419 3i00_A HIP-I, huntingtin-inter 48.0 74 0.0025 23.8 7.0 32 38-69 25-60 (120)
420 1c1g_A Tropomyosin; contractIl 47.9 59 0.002 27.9 8.0 29 39-67 10-38 (284)
421 1dh3_A Transcription factor CR 47.3 11 0.00038 23.8 2.1 29 37-65 24-52 (55)
422 1deb_A APC protein, adenomatou 46.5 47 0.0016 20.1 7.0 40 44-97 12-51 (54)
423 4b6x_A AVRRPS4, avirulence pro 46.1 66 0.0023 21.7 6.6 54 38-100 25-78 (90)
424 2lq4_p Lysophosphatidic acid r 45.6 6.7 0.00023 24.8 0.8 21 40-65 9-29 (80)
425 1joc_A EEA1, early endosomal a 44.9 89 0.003 23.6 7.3 26 41-66 3-35 (125)
426 2qdq_A Talin-1; dimerisation d 42.1 33 0.0011 20.9 3.4 27 75-101 13-39 (50)
427 3mez_B Mannose-specific lectin 41.9 1E+02 0.0034 22.6 9.5 25 234-260 60-84 (113)
428 3kci_A Probable E3 ubiquitin-p 40.9 2.2E+02 0.0074 26.2 29.8 153 232-392 55-240 (389)
429 2b5u_A Colicin E3; high resolu 40.1 59 0.002 30.8 6.5 60 41-101 307-366 (551)
430 1jnm_A Proto-oncogene C-JUN; B 40.1 49 0.0017 21.3 4.5 30 37-66 24-53 (62)
431 1ic2_A Tropomyosin alpha chain 39.9 88 0.003 21.4 8.0 69 33-101 4-72 (81)
432 1go4_E MAD1 (mitotic arrest de 39.0 47 0.0016 23.9 4.5 22 80-101 22-43 (100)
433 1zi0_A DNA gyrase subunit A; b 38.8 2.1E+02 0.0072 25.4 27.5 189 197-392 1-225 (307)
434 2k48_A Nucleoprotein; viral pr 37.3 1.1E+02 0.0039 21.9 7.1 29 34-69 34-62 (107)
435 1suu_A DNA gyrase subunit A; t 36.7 2.3E+02 0.0078 25.2 29.5 192 238-433 5-229 (312)
436 3kci_A Probable E3 ubiquitin-p 36.1 2.6E+02 0.0088 25.7 26.4 195 189-393 106-345 (389)
437 3f7f_A Nucleoporin NUP120; nuc 35.2 55 0.0019 33.3 5.9 37 189-227 223-259 (729)
438 3oja_B Anopheles plasmodium-re 34.0 1.2E+02 0.004 30.1 8.4 26 75-100 556-581 (597)
439 2yy0_A C-MYC-binding protein; 33.5 82 0.0028 19.6 4.4 33 34-66 18-50 (53)
440 1g6u_A Domain swapped dimer; d 33.1 64 0.0022 18.3 3.4 18 37-54 2-19 (48)
441 2ic9_A Nucleocapsid protein; h 32.7 1.3E+02 0.0045 21.3 6.1 31 32-69 2-32 (96)
442 1k8v_A Neuropeptide F; moniezi 32.7 62 0.0021 18.7 3.4 29 20-48 4-34 (40)
443 1ic2_A Tropomyosin alpha chain 32.2 1.2E+02 0.0041 20.7 5.9 49 53-101 3-51 (81)
444 2p06_A Hypothetical protein AF 32.0 36 0.0012 23.0 2.8 20 76-95 59-78 (114)
445 1k4u_P Phagocyte NADPH oxidase 32.0 22 0.00075 19.2 1.4 11 18-28 2-12 (32)
446 3he4_A Synzip6; heterodimeric 31.9 6.3 0.00022 23.1 -0.8 26 76-101 23-48 (56)
447 2dq0_A Seryl-tRNA synthetase; 31.2 1.8E+02 0.0062 27.6 8.7 50 33-82 29-78 (455)
448 2eqb_B RAB guanine nucleotide 30.5 1.5E+02 0.005 21.2 8.0 57 37-93 7-63 (97)
449 1gk6_A Vimentin; intermediate 30.4 1.1E+02 0.0036 19.5 5.6 44 51-94 9-52 (59)
450 3qne_A Seryl-tRNA synthetase, 30.3 1.9E+02 0.0066 27.7 8.6 50 33-82 31-80 (485)
451 2efr_A General control protein 29.8 1.1E+02 0.0039 24.0 5.7 45 52-96 73-117 (155)
452 1ci6_A Transcription factor AT 29.4 1E+02 0.0035 19.9 4.6 26 39-64 27-52 (63)
453 3swk_A Vimentin; cytoskeleton, 28.5 1.5E+02 0.0051 20.6 8.0 61 40-100 12-72 (86)
454 1olz_A Semaphorin 4D; developm 28.0 1.8E+02 0.0062 29.3 8.5 59 420-478 417-477 (663)
455 3twe_A Alpha4H; unknown functi 27.7 62 0.0021 16.0 3.4 14 50-63 9-22 (27)
456 3oa7_A Head morphogenesis prot 27.1 1.3E+02 0.0044 24.5 5.6 46 54-99 28-73 (206)
457 2zux_A YESW protein; beta-prop 26.9 4.6E+02 0.016 25.7 21.9 99 297-401 293-408 (591)
458 1q47_A Semaphorin 3A; beta pro 26.6 2.9E+02 0.0099 26.6 9.3 63 365-427 405-482 (495)
459 3mq9_A Bone marrow stromal ant 26.1 2.3E+02 0.0079 26.9 8.7 69 31-99 348-419 (471)
460 1xmp_A PURE, phosphoribosylami 25.8 1E+02 0.0034 24.7 4.8 45 29-73 101-167 (170)
461 3al9_A Plexin-A2; beta-propell 25.8 1.1E+02 0.0037 30.0 6.2 68 188-255 400-476 (539)
462 1wt6_A Myotonin-protein kinase 25.8 1.6E+02 0.0055 20.1 7.8 41 26-66 5-48 (81)
463 3f6n_A Virion-associated prote 25.4 1.7E+02 0.0057 21.7 5.4 51 37-87 4-54 (129)
464 2ocy_A RAB guanine nucleotide 25.3 2.3E+02 0.0078 22.2 6.7 9 92-100 87-95 (154)
465 1txp_A HnRNP C, heterogeneous 25.1 37 0.0013 17.6 1.4 13 48-60 5-17 (28)
466 2wjv_D Regulator of nonsense t 24.5 23 0.0008 25.4 0.9 19 38-56 10-28 (97)
467 1wp5_A Topoisomerase IV; broke 24.5 3.8E+02 0.013 23.9 24.1 158 188-351 39-224 (323)
468 3ol1_A Vimentin; structural ge 24.4 2.2E+02 0.0075 21.1 8.3 64 35-98 20-90 (119)
469 3q0x_A Centriole protein; cent 24.1 2.6E+02 0.0089 23.6 7.3 39 35-73 178-216 (228)
470 2j5u_A MREC protein; bacterial 24.0 60 0.0021 28.1 3.6 21 46-66 23-43 (255)
471 1zvu_A Topoisomerase IV subuni 24.0 3.2E+02 0.011 27.6 9.1 153 331-483 470-633 (716)
472 3lss_A Seryl-tRNA synthetase; 23.9 2.6E+02 0.009 26.8 8.3 39 32-70 34-72 (484)
473 1wle_A Seryl-tRNA synthetase; 23.9 2.5E+02 0.0085 27.1 8.2 38 35-72 70-107 (501)
474 4gz8_A Semaphorin-3A; multi-do 23.5 2.2E+02 0.0074 28.7 8.0 59 420-478 431-495 (667)
475 3t97_C Nuclear pore glycoprote 23.4 1.6E+02 0.0054 19.2 5.6 18 42-59 1-18 (64)
476 4emc_A Monopolin complex subun 23.3 2.3E+02 0.0078 23.0 6.4 23 45-67 23-45 (190)
477 3ors_A N5-carboxyaminoimidazol 22.2 1.2E+02 0.0041 24.0 4.6 45 29-73 93-159 (163)
478 3teq_A Stromal interaction mol 22.1 2.2E+02 0.0076 20.4 5.8 34 51-86 11-44 (101)
479 1nkp_B MAX protein, MYC proto- 21.9 1.5E+02 0.0053 20.2 4.8 26 40-65 52-77 (83)
480 1i84_S Smooth muscle myosin he 21.7 1.6E+02 0.0055 32.1 7.2 62 37-98 866-934 (1184)
481 3mez_B Mannose-specific lectin 21.4 2.4E+02 0.0082 20.5 11.0 61 286-352 24-84 (113)
482 2i15_A A05_ORF129, hypothetica 21.2 25 0.00084 24.9 0.4 40 36-75 14-53 (135)
483 1q47_A Semaphorin 3A; beta pro 21.2 1.8E+02 0.0062 28.0 6.7 71 408-478 405-487 (495)
484 2w6a_A ARF GTPase-activating p 20.7 43 0.0015 21.1 1.4 22 34-55 40-61 (63)
485 1u11_A PURE (N5-carboxyaminoim 20.3 1.4E+02 0.0048 24.2 4.7 47 29-75 111-179 (182)
486 3mq9_A Bone marrow stromal ant 20.2 2.9E+02 0.0099 26.2 8.1 42 32-73 370-421 (471)
487 2ic6_A Nucleocapsid protein; h 20.2 2.1E+02 0.0072 19.4 6.6 30 33-69 3-32 (78)
488 3j21_W 50S ribosomal protein L 20.1 2E+02 0.0069 19.1 5.3 21 52-72 12-32 (72)
489 3tnu_A Keratin, type I cytoske 20.1 2.9E+02 0.0098 20.9 8.0 59 33-94 43-101 (131)
490 3a0f_A Xyloglucanase; beta-pro 20.0 7E+02 0.024 25.4 22.5 203 274-480 20-281 (763)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.7e-51 Score=388.63 Aligned_cols=286 Identities=22% Similarity=0.361 Sum_probs=259.4
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|.+.|++++|+|++++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++|+.|+.|++|++.+..
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred -ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 263 -NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 263 -~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.......+.+|.+.|.++.|++++. +++++.|+.|++||+.++..+..+. +|...|.+++|+|++.+|++|+.
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-----GHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEET
T ss_pred CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-----CCCCceEEEEECCCCCEEEEEeC
Confidence 2345667789999999999998765 8999999999999999999887765 45688999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
||.|++||++++..+..+.+|...|++++|+|++.+|++++.|+ |++||++..+.+..+........|.+++|+|+|.+
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999998 99999999887777665444567999999999999
Q ss_pred EEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 421 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
|++|+.| +++|++ ........+.+| .+.|.+++|+|+|.+|++|+.||.|+||+
T Consensus 285 l~~g~~d~~i~vwd~----~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDA----LKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEc----ccCcEeeEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999998 999997 445566677775 78999999999999999999999999996
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-50 Score=392.14 Aligned_cols=284 Identities=23% Similarity=0.446 Sum_probs=262.7
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|.++|++++|+|++.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+.+.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~- 182 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF- 182 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.++..+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+. +|...|.++.++|++.+|++|+.|
T Consensus 183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-----GHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-----CCCccEEEEEECCCCCEEEEEcCC
Confidence 7888899999999999999999999999999999999999999888776 455889999999999999999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCC--------------------CCEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSEN--------------------GYYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--------------------~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
|.|++||++++++...+.+|...|.+++|+|+ |.+|++|+.|+ |++||++++.++..+.
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 99999999999999999999999999999996 67899999998 9999999999888887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
.+ ...|.+++|+|+|.+|++++.| +++|++ ....++..+..| ...|++++|+|++.+|++|+.||.|+||
T Consensus 336 ~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~----~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 336 GH--DNWVRGVLFHSGGKFILSCADDKTLRVWDY----KNKRCMKTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp CC--SSCEEEEEECSSSSCEEEEETTTEEEEECC----TTSCCCEEEECC--SSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCCceEEEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 65 6789999999999999999998 999998 445566677665 7789999999999999999999999999
Q ss_pred cCC
Q 011256 480 GLP 482 (490)
Q Consensus 480 ~~~ 482 (490)
++.
T Consensus 408 ~~r 410 (410)
T 1vyh_C 408 ECR 410 (410)
T ss_dssp C--
T ss_pred eCC
Confidence 863
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=349.21 Aligned_cols=284 Identities=19% Similarity=0.355 Sum_probs=257.7
Q ss_pred ccCCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcE--EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 183 HKTSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
..+|.+.|++++|+|+ +.+|++|+.|++|+||++..+.. ...+.+|...|.+++|++++.++++|+.|++|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW 107 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW 107 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 4579999999999984 56999999999999999877654 45788999999999999999999999999999999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
|+.++ ..+..+..|...+.+++|+|++++|++++.||.|++||++++.....+.. +...+.+++|+|++++|
T Consensus 108 d~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 108 DLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-----RGKFILSIAYSPDGKYL 179 (321)
T ss_dssp ETTTT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-----SSSCEEEEEECTTSSEE
T ss_pred ECCCC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-----CCceEEEEEECCCCCEE
Confidence 99886 67778888999999999999999999999999999999999988777653 33679999999999999
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
++|+.||.|++||+++++.+..+.+|..+|++++|+|++.+|++++.|+ |++||++.......+..+ ...|.+++|+
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s 257 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFC 257 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999998 999999998888777665 7789999999
Q ss_pred CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 416 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
|++.+|++++.| ++||++ ....++..+..| ...|.+++|+|++.+|++++.||.|++||++
T Consensus 258 p~~~~l~s~s~D~~v~iwd~----~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDV----GTRTCVHTFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSSEEEEEETTSCEEEEET----TTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEeCCCcEEEEeC----CCCEEEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999998 999998 567778888775 7899999999999999999999999999975
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.5e-45 Score=349.86 Aligned_cols=288 Identities=22% Similarity=0.324 Sum_probs=259.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|...|++++|+|++.+|++|+.||+|++||..+++....+..|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~ 138 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD 138 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred C---ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC--CCcEE
Q 011256 262 G---NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLIL 336 (490)
Q Consensus 262 ~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l 336 (490)
. .......+.+|...|.++.|+|++..|++++.||+|++||+++++.+..+. +|...|.+++|+| ++.+|
T Consensus 139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-----GHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEECCCSSCCEE
T ss_pred ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-----CCCCCeEEEEEEeCCCCCEE
Confidence 2 123456677899999999999999999999999999999999999888776 4557899999988 57899
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
++|+.||.|++||+++++++..+.+|...|++++|+|++.+|++++.|+ |++||++....+..+........+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9999999999999999999999999999999999999999999999998 999999998877766655445678999999
Q ss_pred CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 416 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
|++.+|++|+.| +++|++ .....+..+..| .+.|++++|+|+|++|++|+.||.|+||+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~----~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDV----LKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEEETTSCEEEEET----TTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEEC----CCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999988 999998 445566667665 78999999999999999999999999996
No 5
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.4e-44 Score=339.39 Aligned_cols=287 Identities=20% Similarity=0.382 Sum_probs=250.6
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCC-----CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 182 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPS-----GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
...+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++.+|++|+.|++|++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 356899999999999965 7999999999999999753 3456788999999999999999999999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC---
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--- 332 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 332 (490)
||+.++ ++...+.+|...|.+++|+|++.+|++|+.|++|++||++.. .+..+. +|...+.++.++|.
T Consensus 92 wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~-----~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 92 WDVATG---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLL-----GHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EETTTT---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEEC-----CCSSCEEEEEECCC---
T ss_pred EECCCC---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEe-----ccCCcEEEEEEccCCCC
Confidence 999886 778888999999999999999999999999999999999754 444443 45688999999985
Q ss_pred ---CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCC
Q 011256 333 ---GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETP 408 (490)
Q Consensus 333 ---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~ 408 (490)
+..|++++.|+.|++||+++++....+.+|...|++++|+|+|.+|++++.|+ |++||+++.+.+..+.. ...
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~ 239 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---QDE 239 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---CSC
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCc
Confidence 45899999999999999999999999999999999999999999999999998 99999999988888775 467
Q ss_pred eeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCC------CCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 409 TNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDL------SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
+.+++|+|++.+|++++.+ +++|+++. ......+..+ .+...+.+++|+|||++|++|+.||.|+||++
T Consensus 240 v~~~~~sp~~~~la~~~~~~i~v~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATATGIKVFSLDP----QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEEETT----EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEeCc----CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 9999999999999999888 99999842 3333333221 12457899999999999999999999999998
Q ss_pred CCC
Q 011256 482 PGN 484 (490)
Q Consensus 482 ~~~ 484 (490)
.+.
T Consensus 316 ~t~ 318 (319)
T 3frx_A 316 MTA 318 (319)
T ss_dssp EEC
T ss_pred eec
Confidence 653
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-45 Score=356.85 Aligned_cols=300 Identities=20% Similarity=0.371 Sum_probs=261.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|.+.|++++|+|++++|++|+.||+|+|||..+++....+.+|...|.+++|+|++++|++|+.|+.|++|++...
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ----CccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcE
Q 011256 262 ----GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLI 335 (490)
Q Consensus 262 ----~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 335 (490)
........+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+......+|...|.+++|++ ++.+
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence 1223456678999999999999974 579999999999999999999888776544567889999999987 8899
Q ss_pred EEEEcCCCcEEEEECC-CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC-----CCC
Q 011256 336 LGTGTSEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS-----ETP 408 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-----~~~ 408 (490)
|++|+.||.|++||++ .+..+..+.+|.+.|++++|+|++.+|++++.|+ |++||++++..+..+..... ...
T Consensus 221 l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 9999999999999998 4577888999999999999999999999999998 99999999988777654321 234
Q ss_pred eeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecC--CCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 409 TNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD--LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
+.+++|+|+|.+|++|+.+ +++|+. ........+.. ..|.+.|++++|+|+|.+|++|+.||.|+||++.+.
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~----~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDT----LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEET----TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEEC----CCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999999999999988 999997 33344444321 235789999999999999999999999999999876
Q ss_pred C
Q 011256 485 D 485 (490)
Q Consensus 485 ~ 485 (490)
.
T Consensus 377 ~ 377 (380)
T 3iz6_a 377 R 377 (380)
T ss_dssp S
T ss_pred c
Confidence 4
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-44 Score=342.57 Aligned_cols=298 Identities=19% Similarity=0.319 Sum_probs=243.0
Q ss_pred cCCCC-CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE---EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 184 KTSKP-GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT---TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 184 ~~h~~-~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.+|.. .|.+++|+|+|++|++|+.||.|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++|++|++.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 35655 89999999999999999999999999998775432 336899999999999999999999999999999987
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
.. ...++..+.+|...|.+++|+|++++|++|+.|+.|++||+.++........ ..+|...|.+++|+|++.+|++|
T Consensus 92 ~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 92 QD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV--LNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp CC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE--ECCCCSCEEEEEECSSSSCEEEE
T ss_pred CC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE--ecCcCCCeEEEEECCCCCEEEEE
Confidence 64 3356778899999999999999999999999999999999987643322211 23566889999999999999999
Q ss_pred cCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc---------------eeeee
Q 011256 340 TSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------------FRSFE 401 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~---------------~~~~~ 401 (490)
+.|+.|++||.+++. +...+.+|...|++++|+|+|.+|++++.|+ |++||...... +..+.
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec
Confidence 999999999998875 4567889999999999999999999999998 99999743221 11222
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcce----Eee-eecCCCCCcceEEEEEcCCC-CeEEEEeCC
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN----CIK-TFPDLSGTGKATCVKFGPDA-KYIAVGSMD 473 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~----~~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d 473 (490)
. .+...|.+++|+|++..|++++.| +++|+......... ... .... |...|++++|+|++ .+|++|+.|
T Consensus 249 ~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 249 G-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQA--HSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp S-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTS--SSSCEEEEEECSSSTTEEEEEETT
T ss_pred C-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccc--ccCcEeEeEEeCCCceEEEEcCCC
Confidence 2 236789999999999999999998 99999865332211 111 1223 47899999999988 489999999
Q ss_pred CcEEEecCCCCCCC
Q 011256 474 RNLRVFGLPGNDAP 487 (490)
Q Consensus 474 g~v~iw~~~~~~~~ 487 (490)
|.|++|++.....+
T Consensus 326 g~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 326 GEVAFWKYQRPEGL 339 (345)
T ss_dssp SCEEEEEECC----
T ss_pred CcEEEEEecCCCCc
Confidence 99999999887654
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-43 Score=332.03 Aligned_cols=286 Identities=19% Similarity=0.331 Sum_probs=251.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|.+.|++++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+.++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~- 87 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG- 87 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC-
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC-
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS 341 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~ 341 (490)
.++..+.+|...|.+++|+|++.+|++|+.||+|++||++++...... ..+|...|.+++|+| ++.+|++|+.
T Consensus 88 --~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~----~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 88 --EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT----FEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE----ECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred --cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh----hcccCCcEEEEEECCCCCCEEEEEeC
Confidence 678888999999999999999999999999999999999887444332 225668899999999 6799999999
Q ss_pred CCcEEEEECCCCceeeeec-CCCCCeEEEEEcC--CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 342 EALVKIWDVKSQANVAKFD-GHVGAVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
||.|++||++++.....+. +|...+..+.|+| ++.+|++++.|+ |++||+++++++..+..+ ...|.+++|+|+
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~~~~p~ 239 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPT 239 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEEEECCC
Confidence 9999999998887666554 4667899999987 678999999998 999999999998888876 678999999999
Q ss_pred CCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC--eEEEEeCCCcEEEecCCCC
Q 011256 418 GSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK--YIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 418 ~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~v~iw~~~~~ 484 (490)
+.+|++|+.| +++|++ ..+.....+..+ ...+.+++|+|++. ++++|+. ..+.+|++..+
T Consensus 240 ~~~l~s~s~Dg~i~iWd~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~~~~ 303 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNS----STYKVEKTLNVG--LERSWCIATHPTGRKNYIASGFD-NGFTVLSLGND 303 (304)
T ss_dssp SSEEEEEETTSCEEEEET----TTCCEEEEECCS--SSSEEEEEECTTCGGGCEEEEET-TEEEEEECC--
T ss_pred CCEEEEEcCCCeEEEEEC----CCCceeeeccCC--CccEEEEEECCCCCceEEEEecC-CceEEEEeccC
Confidence 9999999998 999997 566777777765 67899999999875 5777765 55778887654
No 9
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.6e-43 Score=335.24 Aligned_cols=291 Identities=18% Similarity=0.317 Sum_probs=243.3
Q ss_pred cccCCCCCeEEEEe-----cC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEeccCccCEEEEEEeeCCCEEEEEe
Q 011256 182 LHKTSKPGIVSLDI-----HY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEGDLFLTGS 248 (490)
Q Consensus 182 ~~~~h~~~I~~~~~-----~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 248 (490)
...+|.+.|++++| ++ ++++|++|+.|++|++||+..+ .....+.+|...|.+++|+|++.+|++|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 45689999999999 76 8999999999999999998643 45678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 249 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
.|++|++||+.++ .+...+.+|...|.+++|+|++++|++++.|+.|++||+...... ... ....|...+.+++
T Consensus 96 ~D~~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~--~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 96 WDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSA--EKENHSDWVSCVR 169 (343)
T ss_dssp TTSEEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECC--TTTSCSSCEEEEE
T ss_pred CCCcEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eee--cccCCCceeeeee
Confidence 9999999999886 677888999999999999999999999999999999999844332 221 1335678899999
Q ss_pred EcCCC----------cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc-c
Q 011256 329 FHPDG----------LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-N 396 (490)
Q Consensus 329 ~~~~~----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-~ 396 (490)
|+|++ .+|++++.||.|++|| ........+.+|...|++++|+|+|++|++|+.|+ |++||++... .
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 99987 7999999999999999 45667778889999999999999999999999998 9999995443 3
Q ss_pred eeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecC---------CCCCcceEEEEEcCCCCe
Q 011256 397 FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPD---------LSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 397 ~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~ 466 (490)
...+.. ...|.+++|+|++.++++++.+ +++|++....... ...+.. ..|...|.+++|+|+|++
T Consensus 249 ~~~~~~---~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 249 QREFDA---GSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP--VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp SEEEEC---SSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS--EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred ceeecC---CCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc--eEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 333332 4569999999999999888766 9999985432211 112210 124678999999999999
Q ss_pred EEEEeCCCcEEEecCCCC
Q 011256 467 IAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 467 l~s~~~dg~v~iw~~~~~ 484 (490)
|++|+.||.|++|++..+
T Consensus 324 l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEETTSEEEEEEEEEE
T ss_pred EEEecCCceEEEEEEEcc
Confidence 999999999999998654
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-42 Score=325.12 Aligned_cols=287 Identities=21% Similarity=0.423 Sum_probs=254.6
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|...|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.++..+.+|...|.++.|+|++++|++|+.||.|++||++++..+..+. .|...|.+++|+|++.+|++|+.
T Consensus 98 ---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 98 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp ---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEET
T ss_pred ---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcEEEEEEcCCCCEEEEEeC
Confidence 6778889999999999999999999999999999999999998887765 34578999999999999999999
Q ss_pred CCcEEEEECCCCceeeeec-CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEE-cCCC
Q 011256 342 EALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDF-DHSG 418 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~-s~~~ 418 (490)
||.|++||+++++.+..+. .+...+.+++|+|++.+|++++.|+ |++||+++++.+..+..+..........+ .+++
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 9999999999998877764 4567899999999999999999998 99999999988888876643322233334 4678
Q ss_pred CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe--CCCcEEEecCC
Q 011256 419 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS--MDRNLRVFGLP 482 (490)
Q Consensus 419 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~ 482 (490)
.+|++|+.| +++|++ .....+..+..| ...|.+++|+|++.+|++++ .||.|++|+.+
T Consensus 250 ~~l~sg~~dg~i~vwd~----~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNL----QTKEIVQKLQGH--TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEET----TTCCEEEEECCC--SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEECCCCEEEEEEC----CCchhhhhhhcc--CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999988 999998 456677777775 78899999999999999987 69999999875
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8e-43 Score=332.65 Aligned_cols=288 Identities=14% Similarity=0.157 Sum_probs=231.8
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-----------CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-----------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT 252 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~ 252 (490)
..|...|.+++|+|+|.+|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 34667899999999999999887 66778876211 11111122356789999999985 6889999999
Q ss_pred EEEEeCCCCCccce-eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 253 VRVWQGSEDGNYDC-KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 253 i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
|+|||+.++..... ...+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+. +|...|.+++|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-----~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-----AHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECS
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CcCCceEEEEecC
Confidence 99999988643222 23455899999999999999999999999999999999999988775 5668999999999
Q ss_pred CC-cEEEEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceeeeecCCCC
Q 011256 332 DG-LILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 332 ~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~ 406 (490)
++ .+|++|+.||.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.|+ |++||+++++++..+..+ .
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h--~ 257 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH--S 257 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC--S
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC--C
Confidence 87 588999999999999999999888774 35567999999995 67899999998 999999999999888876 7
Q ss_pred CCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe-EEEEeCCCcEEEecCC
Q 011256 407 TPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY-IAVGSMDRNLRVFGLP 482 (490)
Q Consensus 407 ~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~ 482 (490)
..|.+++|+|++ .+|++|+.| |+||++ ..... ..+.+| .+.|++++|+|++.. |++|+.||+|++|+++
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~----~~~~~-~~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDS----SLSEL-FRSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETTSCEEEECT----TCCEE-EEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEEccCCCeEEEEEeCCCeEEEEEC----CCCcE-EEEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 789999999998 578999988 999997 33333 345554 789999999999875 6789999999999998
Q ss_pred CCCCC
Q 011256 483 GNDAP 487 (490)
Q Consensus 483 ~~~~~ 487 (490)
....|
T Consensus 331 ~~~~~ 335 (344)
T 4gqb_B 331 TEPLP 335 (344)
T ss_dssp C----
T ss_pred CCCCC
Confidence 76544
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-42 Score=336.67 Aligned_cols=282 Identities=22% Similarity=0.399 Sum_probs=244.6
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc------------------CEEEEEEeeCCCEEEE
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK------------------KVTSVKFVTEGDLFLT 246 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~l~s 246 (490)
.|...|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..|.. .|.+++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 4889999999999999999976 68999999999999888876542 3999999999999999
Q ss_pred EeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE
Q 011256 247 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 247 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
|+.||+|++||+.+. +....+.+|...|.+++|+|++.+|++++.|++|++||++++.....+... ..+.+
T Consensus 141 ~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~------~~v~~ 211 (393)
T 1erj_A 141 GAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE------DGVTT 211 (393)
T ss_dssp EETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS------SCEEE
T ss_pred EcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC------CCcEE
Confidence 999999999999876 677888999999999999999999999999999999999999988777532 67999
Q ss_pred EEEcC-CCcEEEEEcCCCcEEEEECCCCceeeee-------cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-
Q 011256 327 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-------DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN- 396 (490)
Q Consensus 327 ~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~- 396 (490)
++|+| ++.+|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|.+|++++.|+ |++||+++...
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 99999 8999999999999999999999887776 57889999999999999999999998 99999986432
Q ss_pred -----------eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-
Q 011256 397 -----------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP- 462 (490)
Q Consensus 397 -----------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 462 (490)
...+.. +...|.+++|+|++.+|++|+.| +++|++ .....+..+.+| .+.|.+++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~----~~~~~~~~l~~h--~~~v~~v~~~~~ 363 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDK----KSGNPLLMLQGH--RNSVISVAVANG 363 (393)
T ss_dssp ---------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEECSS
T ss_pred ccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCeEEEEECCC--CCCEEEEEecCC
Confidence 223333 36789999999999999999998 999997 455666777775 77899999986
Q ss_pred -----CCCeEEEEeCCCcEEEecCCCC
Q 011256 463 -----DAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 463 -----~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
++.+|++|+.||.|+||++...
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998654
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.1e-42 Score=351.78 Aligned_cols=297 Identities=21% Similarity=0.324 Sum_probs=246.6
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
...+|...|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|+|++|++|+.||+|++||+.+
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 3467899999999999987 699999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccceeeeec-------ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC------------------
Q 011256 261 DGNYDCKHTLK-------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA------------------ 315 (490)
Q Consensus 261 ~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------ 315 (490)
+ .+...+. +|.+.|.+++|+|++++|++++.|++|++||+.+++.+..+...
T Consensus 222 g---~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 222 G---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp C---CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred C---cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 6 4555553 79999999999999999999999999999999998877655321
Q ss_pred --------------------CCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee-c--------------
Q 011256 316 --------------------GTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF-D-------------- 360 (490)
Q Consensus 316 --------------------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~-------------- 360 (490)
...+|...|.+++|+|+|.+|++++.||.|++||+.++.....+ .
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~ 378 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 378 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence 12367889999999999999999999999999999876543221 0
Q ss_pred -------------------------------------------------------------------CCCCCeEEEEEcC
Q 011256 361 -------------------------------------------------------------------GHVGAVTAISFSE 373 (490)
Q Consensus 361 -------------------------------------------------------------------~~~~~i~~l~~s~ 373 (490)
.|...+.+++|+|
T Consensus 379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp 458 (611)
T 1nr0_A 379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 458 (611)
T ss_dssp SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence 0224577899999
Q ss_pred CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCC
Q 011256 374 NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS 450 (490)
Q Consensus 374 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~ 450 (490)
+|++|++|+.|+ |++||+.......... ..+...|.+++|+|+|++|++++.| +++|++... ...........
T Consensus 459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~---~~~~~~~~~~~ 534 (611)
T 1nr0_A 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN---FELAHTNSWTF 534 (611)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT---TEESCCCCCCC
T ss_pred CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC---Cceeeeeeeee
Confidence 999999999998 9999998754321111 2347789999999999999999998 999997321 33332211111
Q ss_pred CCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 451 GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 451 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|...|.+++|+|||++|++|+.||.|++|++..+.
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 47899999999999999999999999999998654
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=322.26 Aligned_cols=288 Identities=22% Similarity=0.378 Sum_probs=228.2
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEEEEe-cc-CccCEEEEEEeeCCCEEEEEeCCCcEEEEeC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTL-SG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 258 (490)
..+|..+|.+++|+|+ +|++|+.||.|++||+..+ .....+ .+ |...|.+++|+|++++|++|+.|++|+||++
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 4578999999999987 9999999999999999875 445555 44 9999999999999999999999999999998
Q ss_pred CCCC----ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC----eEEEEeecCCCCCCCCCceEEEEc
Q 011256 259 SEDG----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG----ICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 259 ~~~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
.... ...+...+.+|...|.+++|+|++++|++|+.|++|++||+... +++..+. +|...|.+++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-----~h~~~v~~v~~~ 162 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-----EHSQDVKHVIWH 162 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-----CCSSCEEEEEEC
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-----cCCCceEEEEEC
Confidence 5421 22566778899999999999999999999999999999999532 3344433 566889999999
Q ss_pred CCCcEEEEEcCCCcEEEEECCCC--ceeeeecCCCCCeEEEEEcCC--CCEEEEEeCCC-EEEEECCCCc--------ce
Q 011256 331 PDGLILGTGTSEALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSEN--GYYLATAAHDG-VKLWDLRKLK--------NF 397 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~d~-i~iwd~~~~~--------~~ 397 (490)
|++.+|++|+.|+.|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|+ |++||++... ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999999876 678889999999999999998 77999999998 9999997642 22
Q ss_pred eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeee-cCCCCCc-ceEEEEEcC--CCCeEEEEe
Q 011256 398 RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTG-KATCVKFGP--DAKYIAVGS 471 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~s~--~~~~l~s~~ 471 (490)
..+.. .+...|.+++|++++ +|++++.| ++||+... ..+...... ..| .. .|.+++|+| ++++|++|+
T Consensus 243 ~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~--~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 243 AILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD--GEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp EECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET--TEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEE
T ss_pred eeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC--CceEEEecccccc--ccceEEEEEEecCCCceEEEEec
Confidence 22221 247789999999765 77888877 99999742 122333322 333 54 899999999 789999999
Q ss_pred CCCcEEEecCCC
Q 011256 472 MDRNLRVFGLPG 483 (490)
Q Consensus 472 ~dg~v~iw~~~~ 483 (490)
.||.|+||++..
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999864
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-42 Score=332.07 Aligned_cols=287 Identities=17% Similarity=0.232 Sum_probs=233.4
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeC------CCcEEEEeCCCCcEE----EEeccCccCEEEEEEeeCCCEEEEEeCCCcE
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGV------DTNAVLFDRPSGQIV----TTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 253 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 253 (490)
..|...|++++|+|||++|++|+. |+.|++|+..++... ....+|...|.+++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 458889999999999999999997 778999998776442 33446888999999999986 5567889999
Q ss_pred EEEeCCCCCccc-eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC
Q 011256 254 RVWQGSEDGNYD-CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD 332 (490)
Q Consensus 254 ~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 332 (490)
+|||+.++.... ......+|...|++++|+|++++|++|+.||.|++||+++++.+..+. +|...|.+++|+++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-----AHSSEVNCVAACPG 192 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTT
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEccC
Confidence 999998753221 123345799999999999999999999999999999999999888775 45688999999998
Q ss_pred C-cEEEEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCC
Q 011256 333 G-LILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 333 ~-~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
+ .++++++.||.|++||+++++.+..+. .+...+++++|+|+ +.+|++|+.++ |++||+++++....+..+ ..
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~--~~ 270 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH--SQ 270 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC--SS
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc--ce
Confidence 7 488999999999999999988776553 46678999999997 57899999998 999999999988888765 67
Q ss_pred CeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-CCCeEEEEeCCCcEEEecCCC
Q 011256 408 PTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 408 ~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.|.+++|+|++ .+|++++.| ++||++ .....+..+ . |.+.|++++|+| ++.+|++|+.||.|++|+++.
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~----~~~~~~~~~-~--H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDA----DFSEVFRDL-S--HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECT----TSCEEEEEC-C--CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEEC----CCCcEeEEC-C--CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 89999999987 678999988 999997 344444433 4 478999999998 899999999999999999976
Q ss_pred CC
Q 011256 484 ND 485 (490)
Q Consensus 484 ~~ 485 (490)
..
T Consensus 344 ~~ 345 (357)
T 4g56_B 344 EG 345 (357)
T ss_dssp --
T ss_pred CC
Confidence 43
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.7e-41 Score=318.24 Aligned_cols=289 Identities=21% Similarity=0.347 Sum_probs=248.5
Q ss_pred ccCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCC-----cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 183 HKTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSG-----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
.++|.+.|++|+|+|+ +++|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 4689999999999997 689999999999999998754 3567889999999999999999999999999999999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--c
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG--L 334 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 334 (490)
+.... ........+...+..+.+++++.+|++++.|+.+++||+......... ..+|...+.+++|++++ .
T Consensus 114 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 114 DLTTG---TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ----DESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp ETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC----SSSCSSCEEEEEECSCSSSC
T ss_pred eeccc---ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE----eccccCcccceEEccCCCCc
Confidence 99876 566666778889999999999999999999999999999877654433 33566889999999864 6
Q ss_pred EEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEE
Q 011256 335 ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 413 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 413 (490)
++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++.+|++++.|+ |++||+++.+.+..+.. ...+.++.
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~ 263 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALC 263 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceEEeee
Confidence 788999999999999999999999999999999999999999999999998 99999999988887776 46799999
Q ss_pred EcCCCCEEEEEecC-eEEEEEeecCCcceEeeeec-------CCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 414 FDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFP-------DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 414 ~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|+|++.+++++... +++|++. ....+..+. ...|...|++++|+|+|++|++|+.||.|+||++.++.
T Consensus 264 ~~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 264 FSPNRYWLCAATGPSIKIWDLE----GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECSSSSEEEEEETTEEEEEETT----TTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCCceeeccCCCEEEEEECC----CCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999888777666 9999973 333333322 12347789999999999999999999999999998764
No 17
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.5e-41 Score=351.11 Aligned_cols=289 Identities=22% Similarity=0.376 Sum_probs=249.6
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCC-----cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 182 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSG-----QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
...+|.+.|++++|+|++ ++|++|+.||+|++|++.+. .....+.+|...|.+++|+|++++|++|+.||+|+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 456899999999999865 79999999999999998753 456788999999999999999999999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC--
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-- 333 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 333 (490)
||+.++ .+...+.+|...|.+++|+|++++|++|+.|++|++||+.......... ...+|...|.+++|+|++
T Consensus 457 wd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 457 WDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSS
T ss_pred EECCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCc
Confidence 999886 6778889999999999999999999999999999999987654433222 234677899999999987
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEE
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i 412 (490)
..|++|+.||.|++||+++++....+.+|.+.|++++|+|+|.+|++++.|+ |++||+++++.+..+.. ...+.++
T Consensus 532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~ 608 (694)
T 3dm0_A 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHAL 608 (694)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEEE
T ss_pred ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEEE
Confidence 6899999999999999999999999999999999999999999999999998 99999999988776654 4679999
Q ss_pred EEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCC-----------------CCcceEEEEEcCCCCeEEEEeCCC
Q 011256 413 DFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS-----------------GTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
+|+|++.++++++.+ ++||++ .....+..+..+. +...+++++|+|+|++|++|+.||
T Consensus 609 ~~sp~~~~l~~~~~~~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 609 CFSPNRYWLCAATEHGIKIWDL----ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EECSSSSEEEEEETTEEEEEET----TTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEcCCCcEEEEEcCCCEEEEEC----CCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 999999999998887 999998 3344444332210 112478999999999999999999
Q ss_pred cEEEecCC
Q 011256 475 NLRVFGLP 482 (490)
Q Consensus 475 ~v~iw~~~ 482 (490)
.|+||++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
No 18
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-40 Score=322.16 Aligned_cols=297 Identities=15% Similarity=0.181 Sum_probs=250.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
++..|..+|++++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345688899999999999999999999999999999887 888999999999999999999999999999999999997
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
++. ......+..|...|.+++|+|++++|++++.||.|++||+..+......... ...|...|.+++|+|++.+|++|
T Consensus 83 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 83 GRT-WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp TTE-EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEE
T ss_pred CCe-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEE
Confidence 642 2234445679999999999999999999999999999999887632211111 23556889999999999999999
Q ss_pred cCCCcEEEEEC------------------CCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeee
Q 011256 340 TSEALVKIWDV------------------KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 340 ~~dg~i~iwd~------------------~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 400 (490)
+.||.|++||+ ..++.+..+..|...|.+++|+|++.+|++++.|+ |++||+++++.+..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 99999999995 36788888889999999999999999999999998 999999999988888
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEe------------------------------------
Q 011256 401 ESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI------------------------------------ 443 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~------------------------------------ 443 (490)
..+ ..++.+++|+|++.+++++... +++|++......|...
T Consensus 241 ~~~--~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 241 ASE--TLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp ECS--SCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred ccC--CCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 765 6789999999999999988544 9999996521222221
Q ss_pred eeecCCCCCcceEEEEEc-CCC---CeEEEEeCCCcEEEecCCC
Q 011256 444 KTFPDLSGTGKATCVKFG-PDA---KYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 444 ~~~~~~~~~~~v~~~~~s-~~~---~~l~s~~~dg~v~iw~~~~ 483 (490)
..+. ..|...|++++|. ++| .+|++|+.||.|++|++..
T Consensus 319 ~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 319 AGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 1121 1357899999966 677 9999999999999999865
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-40 Score=343.36 Aligned_cols=293 Identities=18% Similarity=0.244 Sum_probs=248.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
....+++.+.+++|+|+|++|++++ ++.|++|++.+++....+.+|...|++++|+|+|++|++|+.||+|+|||+.++
T Consensus 13 ~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 13 LPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CCCcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 3345677889999999999999987 569999999989999999999999999999999999999999999999998653
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc-EE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-IL 336 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 336 (490)
. ......+.+|.+.|.+++|+|++++|++++.+ +.|++||. +..... ..+|...|.+++|+|++. .|
T Consensus 92 ~-~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~-----l~gh~~~v~~v~f~p~~~~~l 163 (611)
T 1nr0_A 92 T-HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGN-----LTGQARAMNSVDFKPSRPFRI 163 (611)
T ss_dssp T-CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBC-----CCCCSSCEEEEEECSSSSCEE
T ss_pred c-ceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcce-----ecCCCCCceEEEECCCCCeEE
Confidence 2 13456778899999999999999999999875 47888884 333322 346779999999999986 69
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC-----CCCCCee
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----DSETPTN 410 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----~~~~~i~ 410 (490)
++|+.|+.|++||..+++.+..+.+|...|++++|+|+|.+|++++.|+ |++||+.+++....+... .|...|.
T Consensus 164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 9999999999999999999999999999999999999999999999998 999999998877766421 3478999
Q ss_pred EEEEcCCCCEEEEEecC--eEEEEEeecCCc---------------------------------------ceEeeeecCC
Q 011256 411 SVDFDHSGSYLAVASAD--IRVYQVASVKAD---------------------------------------WNCIKTFPDL 449 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~---------------------------------------~~~~~~~~~~ 449 (490)
+++|+|+|++|++++.| +++|++...... ......+.+
T Consensus 244 ~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g- 322 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG- 322 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-
Confidence 99999999999999998 999997432110 011122333
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 450 SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 450 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|...|++++|+|+|++|++++.||.|++||+..+.
T Consensus 323 -h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 323 -HNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred -CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 47789999999999999999999999999998653
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-40 Score=324.08 Aligned_cols=293 Identities=18% Similarity=0.297 Sum_probs=249.0
Q ss_pred cCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeC----CCCc------EEEEecc----------CccCEEEEEEeeCCC
Q 011256 184 KTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDR----PSGQ------IVTTLSG----------HSKKVTSVKFVTEGD 242 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~~~~~~ 242 (490)
..|.++|++++|+|+++ +|++|+.||.|++|++ .+++ ....+.. |...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34568999999999999 9999999999999999 8887 4555544 688999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC-----
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT----- 317 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----- 317 (490)
+|++|+.||.|++||... .....+..|...|.+++|+|++++|++++.||.|++||+.++..+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKTG----ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp EEEEEETTSCEEEEETTS----CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred EEEEEeCCCeEEEEeCCC----CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 999999999999999433 67778889999999999999999999999999999999998887765543211
Q ss_pred ----------------------------------------------CCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC
Q 011256 318 ----------------------------------------------DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK 351 (490)
Q Consensus 318 ----------------------------------------------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 351 (490)
..|...|.+++|+|++.+|++++.||.|++||++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp --------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 1466789999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--e
Q 011256 352 SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--I 428 (490)
Q Consensus 352 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i 428 (490)
+++.+..+..|...|.+++|+|++ ++++++.++ |++||+++++.+..+..+ ...+.+++|+|++.+|++++.+ +
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--GVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--TCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--CccEEEEEEcCCCCEEEEEECCCeE
Confidence 999999999999999999999999 999999998 999999999888887765 6789999999999999999988 9
Q ss_pred EEEEEeecCC----------------cceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 429 RVYQVASVKA----------------DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 429 ~v~~~~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
++|++..... ....+..+..+.....|++++|+|++++|++++.||.|++|++++
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 9999854320 011566666652112899999999999999999999999999874
No 21
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-40 Score=320.59 Aligned_cols=295 Identities=11% Similarity=0.218 Sum_probs=250.3
Q ss_pred eeccccCCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcEEEEecc-----CccCEEEEEEeeC----CCEEE
Q 011256 179 SHPLHKTSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSG-----HSKKVTSVKFVTE----GDLFL 245 (490)
Q Consensus 179 ~~~~~~~h~~~I~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~----~~~l~ 245 (490)
...+..+|..+|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +.+|+
T Consensus 10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 33566789999999999984 45677777778999999998877766654 5578999999998 67999
Q ss_pred EEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCc
Q 011256 246 TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 246 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 324 (490)
+|+.||.|++||+.++ ..+..+.+|...|.+++|+| ++.+|++++.||.|++||+++++.+..+.. ..+|...|
T Consensus 90 ~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~v 164 (366)
T 3k26_A 90 VAGSRGIIRIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEV 164 (366)
T ss_dssp EEETTCEEEEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS--TTSCSSCE
T ss_pred EecCCCEEEEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc--cccccCce
Confidence 9999999999999876 67778889999999999999 899999999999999999999988877742 23566899
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC----------------------------CCCCeEEEEEcCCCC
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----------------------------HVGAVTAISFSENGY 376 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~i~~l~~s~~~~ 376 (490)
.+++|+|++.+|++++.||.|++||+++++....+.. |...|.+++|+ +.
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 9999999999999999999999999998765544433 88999999998 77
Q ss_pred EEEEEeCCC-EEEEECCCCcc--------------eeeeecCCCCCCeeEEEEcCC--CCEEEEEecC--eEEEEEeecC
Q 011256 377 YLATAAHDG-VKLWDLRKLKN--------------FRSFESSDSETPTNSVDFDHS--GSYLAVASAD--IRVYQVASVK 437 (490)
Q Consensus 377 ~l~~~~~d~-i~iwd~~~~~~--------------~~~~~~~~~~~~i~~i~~s~~--~~~l~~~~~d--i~v~~~~~~~ 437 (490)
+|++++.++ |++||+++... +..+..+ ...|.+++|+|+ +.+|++++.+ +++|++....
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999998 99999988654 4444444 668999999999 9999999988 9999996554
Q ss_pred CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 438 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
........+..|.+...|++++|+|++++|++++.||.|++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 444455677776667899999999999999999999999999985
No 22
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=313.98 Aligned_cols=289 Identities=19% Similarity=0.302 Sum_probs=251.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~- 106 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG- 106 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCC------CCCCCC--CceEEEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAG------TDGRPE--GYTSAAF 329 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~------~~~~~~--~v~~~~~ 329 (490)
.+...+. |...|.+++|+|++.++++++.+ |.|.+||+..+.....+.... ...+.. .+.+++|
T Consensus 107 --~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 107 --QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp --CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred --cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 5666665 88899999999999999999999 999999987654221111000 011223 8999999
Q ss_pred cCCCcEEEEEcCCCcEEEEECCC-CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCC
Q 011256 330 HPDGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
+|++.+|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.++ |++||+++++....+.. ..
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~ 260 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET---DC 260 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SS
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC---CC
Confidence 99999999999999999999998 788888999999999999999999999999998 99999999988888873 67
Q ss_pred CeeEEEEcCCCCEEEEEecC----------------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 408 PTNSVDFDHSGSYLAVASAD----------------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d----------------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.+..++|+|++.++++++.+ +++|++ .....+..+..| ...|++++|+|++++|++++
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~----~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK----IFEEEIGRVQGH--FGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEET----TTCCEEEEEECC--SSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec----CCCcchhheecc--cCcEEEEEECCCCCEEEEEc
Confidence 89999999999999998864 456665 445566666665 78999999999999999999
Q ss_pred CCCcEEEecCCCC
Q 011256 472 MDRNLRVFGLPGN 484 (490)
Q Consensus 472 ~dg~v~iw~~~~~ 484 (490)
.||.|++|++..+
T Consensus 335 ~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 335 EDGFIRLHHFEKS 347 (369)
T ss_dssp TTSEEEEEEECHH
T ss_pred CCCeEEEEECccc
Confidence 9999999999753
No 23
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.7e-40 Score=322.40 Aligned_cols=297 Identities=17% Similarity=0.200 Sum_probs=251.0
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc------EEEEeccCccCEEEEEEeeC----C---CEEEEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ------IVTTLSGHSKKVTSVKFVTE----G---DLFLTG 247 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~----~---~~l~s~ 247 (490)
....+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + .+|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 45678999999999998 899999999999999999887 78888899999999999999 9 999999
Q ss_pred eCCCcEEEEeCCCCCcc--ceeeeeccc-----ccceEEEEEe----cCCCE-EEEEECCCeEEEEeCCC------CeEE
Q 011256 248 SADKTVRVWQGSEDGNY--DCKHTLKDH-----TAEVQAVTVH----ATNKY-FVTASLDNTWCFYDLSS------GICL 309 (490)
Q Consensus 248 s~dg~i~iwd~~~~~~~--~~~~~~~~h-----~~~v~~l~~~----~~~~~-l~s~~~dg~i~iwd~~~------~~~~ 309 (490)
+.||.|++|++.+.... .....+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ +..+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 99999999999875210 016667777 5899999999 99999 99999999999999988 5544
Q ss_pred E-----Eeec--CCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecC---C---CCCeEEEEEcCCCC
Q 011256 310 T-----QVSD--AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDG---H---VGAVTAISFSENGY 376 (490)
Q Consensus 310 ~-----~~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~l~~s~~~~ 376 (490)
. .+.. .....|...+.+++|+|++ +|++|+.||.|++||+++++.+..+.. | ...|.+++|+|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 3 3321 0012355789999999999 999999999999999999999999998 8 99999999999999
Q ss_pred EEEEEeCC---C-EEEEECCCCcceeeeecCC-----------CCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc
Q 011256 377 YLATAAHD---G-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 439 (490)
Q Consensus 377 ~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 439 (490)
+|++++.+ + |++||+++++.+..+.... +...|.+++|+|++.+|++++.| +++|++ ..
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~ 322 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV----KT 322 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET----TT
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc----CC
Confidence 99999998 7 9999999998888877611 37789999999999999999988 999998 45
Q ss_pred ceEeeeec------CC-------------CCCcceEEEEEcCCC----------CeEEEEeCCCcEEEecCCCC
Q 011256 440 WNCIKTFP------DL-------------SGTGKATCVKFGPDA----------KYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 440 ~~~~~~~~------~~-------------~~~~~v~~~~~s~~~----------~~l~s~~~dg~v~iw~~~~~ 484 (490)
...+..+. .| .|...|++++|+|++ ++|++|+.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 56666665 32 016789999999998 79999999999999999765
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-39 Score=331.72 Aligned_cols=276 Identities=25% Similarity=0.456 Sum_probs=247.6
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
...|...|.+++|+|++.+|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++|+.||.|++|+...
T Consensus 299 ~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-- 375 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 375 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--
T ss_pred EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--
Confidence 45688999999999999999999999999999985 556677889999999999999999999999999999999654
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
..+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+. +|...|.+++|+|++.+|++++.|
T Consensus 376 --~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 376 --QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp --CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred --CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-----CCCCCeEEEEECCCCCEEEEEcCC
Confidence 677788899999999999999999999999999999996 455555554 455889999999999999999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+ |++||. +++.+..+..+ ...|++++|+|+|++|
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h--~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTI 523 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECTTSSCE
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC--CCCEEEEEEcCCCCEE
Confidence 99999996 5678888999999999999999999999999998 999995 56777777765 6789999999999999
Q ss_pred EEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 422 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
++++.| +++|+. ....+..+.+| .+.|++++|+|||++|++++.||.|++||
T Consensus 524 ~s~~~dg~v~lwd~-----~~~~~~~~~~h--~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 524 ASASDDKTVKLWNR-----NGQLLQTLTGH--SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSEEEEECT-----TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECcCEEEEEeC-----CCCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999998 999984 34567777776 78999999999999999999999999997
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-39 Score=315.66 Aligned_cols=287 Identities=16% Similarity=0.218 Sum_probs=235.6
Q ss_pred cccCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcEEEEec--cCccCEEEEEEee-CCCEEEEEeCCCcEEEEe
Q 011256 182 LHKTSKPGIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd 257 (490)
....|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|++++.||.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 346788999999999999 899999999999999999888777765 6999999999999 788999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc-EE
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-IL 336 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 336 (490)
+.+. ..........|...|.+++|+|++++|++++.||.|++||+ ++..+..+. +|...|.+++|+|++. +|
T Consensus 148 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 148 FSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-----LHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp TTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-----CSSSCEEEEEECSSCTTEE
T ss_pred CCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-----cCCCcEEEEEECCCCCCEE
Confidence 9862 22222222345588999999999999999999999999999 456666654 3558899999999998 99
Q ss_pred EEEcCCCcEEEEECCC----CceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCCcceeeeecCCC-----
Q 011256 337 GTGTSEALVKIWDVKS----QANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----- 405 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----- 405 (490)
++|+.||.|++||+++ +..+..+ +|...|++++|+| ++.+|++++.|+ |++||+++++....+..+..
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 9999999999999987 5566666 5899999999999 999999999998 99999999887766654321
Q ss_pred CC----------CeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC
Q 011256 406 ET----------PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD 473 (490)
Q Consensus 406 ~~----------~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 473 (490)
.. .+..+.|+|++++ +++.| ++||++ .....+..+..+.+.+.+.+++|+|++++|++|+ |
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~----~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDA----NSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEET----TTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEec----CCCceeeeecCCCCCceEEEEEEecCccEEEEec-C
Confidence 22 2333455555555 44455 999998 4566677777655567788889999999999997 9
Q ss_pred CcEEEecCCC
Q 011256 474 RNLRVFGLPG 483 (490)
Q Consensus 474 g~v~iw~~~~ 483 (490)
|.|+||++.+
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999975
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.4e-39 Score=302.95 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=224.2
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
+...++.+|.+.|.+++|+|++++|++|+.||+|++||+.++ ..+..+..|..+|.+++|+|++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 346778899999999999999999999999999999999886 67788889999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEEEcC-CCCE
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAISFSE-NGYY 377 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~-~~~~ 377 (490)
+||+.+++.+..+. +|...|.+++|+|++.+|++|+.||.|++||++++ .....+.+|...|.+++|+| ++.+
T Consensus 81 vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 81 VFNYNTGEKVVDFE-----AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred EEECCCCcEEEEEe-----CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 99999999888776 45688999999999999999999999999999887 45567889999999999999 6789
Q ss_pred EEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC--CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCC
Q 011256 378 LATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH--SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
|++|+.|+ |++||++.......+... +...+..+.|+| ++.+|++++.| +++|++ ....++..+.+| .
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~----~~~~~~~~~~~h--~ 228 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----QTKSCVATLEGH--M 228 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEET----TTTEEEEEEECC--S
T ss_pred EEEEeCCCeEEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC----CCCccceeeCCC--C
Confidence 99999998 999999987776665543 256788899986 77899999999 999998 556778888776 7
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 453 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
..|.+++|+|++.+|++|+.||.|++||+....
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 889999999999999999999999999997654
No 27
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-41 Score=326.50 Aligned_cols=293 Identities=16% Similarity=0.161 Sum_probs=234.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
++..+.++|++++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34556779999999999999999999999999999988 7788899999999999999999999999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE---EEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC---LTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
++........+..|...|.+++|+|++++|++++.|+.|++||++++.. ...+.. .|...|.+++|+|++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR----PLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS----SCCSCEEEEEECTTSSEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec----ccCCCeEEEEEcCCCCEE
Confidence 8643446777888999999999999999999999999999999998863 444431 266899999999999999
Q ss_pred EEEcCCCcEEEEECC------------------CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc-
Q 011256 337 GTGTSEALVKIWDVK------------------SQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN- 396 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~- 396 (490)
++|+.||.|++||++ .++++..+ +|...|++++|+|++.+|++++.|+ |++||+++++.
T Consensus 162 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 999999999999985 35566667 8999999999999999999999998 99999999887
Q ss_pred ---eeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCc--------------------------ceEe---
Q 011256 397 ---FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKAD--------------------------WNCI--- 443 (490)
Q Consensus 397 ---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~--------------------------~~~~--- 443 (490)
+..+..+ ...|.+++|+|++++|++++.+ +.+|........ ....
T Consensus 241 ~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 241 PRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp EEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred ceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 6666665 6789999999999999999888 778876421100 0000
Q ss_pred ---eeec--------------CCCCCcceEEEEEcCCC-C---eEEEEeCCCcEEEecC
Q 011256 444 ---KTFP--------------DLSGTGKATCVKFGPDA-K---YIAVGSMDRNLRVFGL 481 (490)
Q Consensus 444 ---~~~~--------------~~~~~~~v~~~~~s~~~-~---~l~s~~~dg~v~iw~~ 481 (490)
..+. ...|.+.|+++++.+.. . .|++||.||.|+||++
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 01157889999976543 3 5999999999999986
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.1e-39 Score=303.91 Aligned_cols=279 Identities=18% Similarity=0.326 Sum_probs=242.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE---EEEe--ccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI---VTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.|...|++++|+|++++|++++ ||.|++||+.++.. +..+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 6889999999999999999998 99999999987643 2233 2799999999999999999999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
... ......+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. .|...+.+++|+|++.+|+++
T Consensus 128 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 128 APT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----GHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp CC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEE
T ss_pred CCC-cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----cccCceEEEEECCCCCEEEEE
Confidence 752 23566777899999999999999999999999999999999998887775 345789999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
+.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.++ |++||+++.+.. .+ ..+...+.+++|+|++
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL--HLHESCVLSLKFAYCG 277 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE--CCCSSCEEEEEECTTS
T ss_pred ecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EE--cCCccceeEEEECCCC
Confidence 999999999999998887775 678899999999999999999998 999999987653 23 3347889999999999
Q ss_pred CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 419 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 419 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
++|++++.+ +++|++.. ........ +...|.+++|+|++++|++++.||.|++|++
T Consensus 278 ~~l~~~~~dg~i~~~~~~~----~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPY----GASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SEEEEEETTSEEEEEETTT----CCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CEEEEecCCCcEEEEECCC----CeEEEEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999988 99999733 33333222 3678999999999999999999999999996
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=310.92 Aligned_cols=298 Identities=13% Similarity=0.182 Sum_probs=244.5
Q ss_pred ccccCCCCCeEEEEecCCCCE-EEEEeC---CCcEEEEeCCCCcEEEEe-ccCccCEEEEEEeeC---CCEEEEEeCCCc
Q 011256 181 PLHKTSKPGIVSLDIHYSKDV-IATGGV---DTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVTE---GDLFLTGSADKT 252 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~---~~~l~s~s~dg~ 252 (490)
.+..+|...|++++|+|++.. +++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 345679999999999999864 456665 899999999988775443 378999999999998 699999999999
Q ss_pred EEEEeCCCCCccceeeeecccccceEEEEE------ecCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCCCCCCCCce
Q 011256 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTV------HATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~ 325 (490)
|++||+.... .....+.+|...|.++.| +|++++|++++.||.|++||+.++. .+..+... ...+...+.
T Consensus 92 i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~ 168 (357)
T 3i2n_A 92 LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV-QGENKRDCW 168 (357)
T ss_dssp EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC-TTSCCCCEE
T ss_pred EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc-CCCCCCceE
Confidence 9999998763 267778899999999965 6789999999999999999999887 55555432 212235788
Q ss_pred EEE----EcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC---CCCEEEEEeCCC-EEEEECCCCcce
Q 011256 326 SAA----FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE---NGYYLATAAHDG-VKLWDLRKLKNF 397 (490)
Q Consensus 326 ~~~----~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~~l~~~~~d~-i~iwd~~~~~~~ 397 (490)
+++ |+|++.+|++|+.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.++ |++||+++.+..
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 888 788999999999999999999999887544 45788999999999 999999999998 999999987766
Q ss_pred eeee---cCCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEEeecCCc---------------ceEeeeecCCCCCcceE
Q 011256 398 RSFE---SSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKAD---------------WNCIKTFPDLSGTGKAT 456 (490)
Q Consensus 398 ~~~~---~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~---------------~~~~~~~~~~~~~~~v~ 456 (490)
..+. ...+...|.+++|+|++. +|++++.| +++|++...... ...+..+..| ...|+
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~ 325 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPIS 325 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCee
Confidence 5554 113478999999999998 89999988 999999653321 2456666665 78999
Q ss_pred EEEEcCCCCeEE-EEeCCCcEEEecCCCC
Q 011256 457 CVKFGPDAKYIA-VGSMDRNLRVFGLPGN 484 (490)
Q Consensus 457 ~~~~s~~~~~l~-s~~~dg~v~iw~~~~~ 484 (490)
+++|+|++++|+ +++.||.|++|++...
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999998 8999999999999764
No 30
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=298.07 Aligned_cols=284 Identities=17% Similarity=0.237 Sum_probs=247.1
Q ss_pred eccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 180 HPLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.....+|.+.|++++| +++++|++|+.||.|++||+.++.....+..|...|.+++|+|++++|++|+.||.|++|++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 3456789999999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGT 338 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 338 (490)
..........+.+|...|.++.| +++++++++.||.|++|| .+.....+. .|...+.++.|+| ++.++++
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-----AHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-----CCSSCEEEEEEEETTTTEEEE
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-----cCCCceeEEEEccCCCCEEEE
Confidence 76555677788899999999999 578999999999999999 566665554 3457899999998 8999999
Q ss_pred EcCCCcEEEEECCCCceeeeecC-CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC
Q 011256 339 GTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
++.||.|++|| .++....+.. |...|.+++|+|++. +++++.++ |++||+++++.+..+..+ ...+.+++|+|
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~ 235 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIKLLP 235 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECT
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEEEec
Confidence 99999999999 4566667766 889999999999998 88899998 999999999988888765 67899999999
Q ss_pred CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 417 SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 417 ~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
++. |++++.+ +++|++ ........+..+ ...|.+++|+|+++ +++++.||.|++|++..+..
T Consensus 236 ~~~-l~~~~~dg~v~iwd~----~~~~~~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 236 NGD-IVSCGEDRTVRIWSK----ENGSLKQVITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TSC-EEEEETTSEEEEECT----TTCCEEEEEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CCC-EEEEecCCEEEEEEC----CCCceeEEEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 994 7777777 999997 455666666665 67899999999998 66789999999999987643
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.4e-38 Score=322.19 Aligned_cols=279 Identities=25% Similarity=0.462 Sum_probs=248.8
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
...|...|++++|+|+++.+++++.|+.|++||. +++.+..+.+|...|.+++|+|++.+|++++.||+|++||...
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-- 334 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-- 334 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC--
Confidence 4568889999999999999999999999999997 5678888999999999999999999999999999999999876
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.....+.+|...|.+++|+|++.++++++.||.|++||. +++.+..+. +|...|.+++|+|++.+|++++.|
T Consensus 335 --~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 335 --QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp --CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETT
T ss_pred --CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-----CCCCCeEEEEECCCCCEEEEEeCC
Confidence 456677889999999999999999999999999999996 455555554 455889999999999999999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|+ |++||+ +.+.+..+..+ ...|.+++|+|++++|
T Consensus 407 ~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTI 482 (577)
T ss_dssp SEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC--SSCEEEEEECTTSCEE
T ss_pred CEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC--CCCEEEEEEcCCCCEE
Confidence 99999995 5778888999999999999999999999999998 999996 45566666655 6789999999999999
Q ss_pred EEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 422 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
++++.| +++|+. ....+..+..| ...|++++|+|+|++|++++.||.|++||.++
T Consensus 483 as~~~d~~i~iw~~-----~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-----NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEETTSEEEEEET-----TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEeCCCEEEEEcC-----CCCEEEEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 999998 999984 35667777775 78999999999999999999999999999754
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=301.68 Aligned_cols=241 Identities=20% Similarity=0.391 Sum_probs=226.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|++..+
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~- 154 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG- 154 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.....+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++.+|++|+.|
T Consensus 155 --~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~d 227 (321)
T 3ow8_A 155 --KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDD 227 (321)
T ss_dssp --SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCCCEEEECTTSCEEEEECTT
T ss_pred --ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-----ccCCceeEEEEcCCCCEEEEEcCC
Confidence 5667778889999999999999999999999999999999999887775 455789999999999999999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
|.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+++++++..+..+ ...|.+++|+|++.+|
T Consensus 228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKI 305 (321)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEE
Confidence 9999999999999999999999999999999999999999998 999999999988888765 7789999999999999
Q ss_pred EEEecC--eEEEEE
Q 011256 422 AVASAD--IRVYQV 433 (490)
Q Consensus 422 ~~~~~d--i~v~~~ 433 (490)
++++.| ++||+.
T Consensus 306 ~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 306 VSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTCCEEEEEC
T ss_pred EEEeCCCeEEEEeC
Confidence 999998 999985
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.4e-39 Score=312.78 Aligned_cols=248 Identities=24% Similarity=0.426 Sum_probs=226.7
Q ss_pred EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEE
Q 011256 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFY 301 (490)
Q Consensus 222 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iw 301 (490)
...+.+|..+|++++|+|++.+|++|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++|+.||+|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 3457789999999999999999999999999999999886 6778889999999999999999999999999999999
Q ss_pred eCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 302 DLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
|+.++.++..+. +|...|.+++|+|++.+|++|+.|+.|++||++++.++..+.+|...|.++.|+|++.+|++|
T Consensus 178 d~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 178 DFQGFECIRTMH-----GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp ETTSSCEEECCC-----CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eCCCCceeEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence 999988776654 566899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC--------------------CCEEEEEecC--eEEEEEeecCC
Q 011256 382 AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS--------------------GSYLAVASAD--IRVYQVASVKA 438 (490)
Q Consensus 382 ~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~--------------------~~~l~~~~~d--i~v~~~~~~~~ 438 (490)
+.|+ |++||+++......+..+ ...|.+++|+|+ |.+|++|+.| +++|++ .
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~----~ 326 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREH--RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----S 326 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET----T
T ss_pred cCCCeEEEEECCCCceeeEecCC--CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC----C
Confidence 9998 999999999888777665 678999999996 6789999998 999998 5
Q ss_pred cceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 439 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 439 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...++..+.+| ...|++++|+|+|++|++|+.||.|++||+..+.
T Consensus 327 ~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 327 TGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp TTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 56677777775 7789999999999999999999999999997654
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-40 Score=320.80 Aligned_cols=298 Identities=15% Similarity=0.253 Sum_probs=251.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC----CcEEEEeccCccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS----GQIVTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~ 259 (490)
.|...|++++|+|++.+|++|+.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +.+|++|+.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4778999999999999999999999999999987 4588899999999999999998 8899999999999999998
Q ss_pred CCC------ccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCC-CCCCCCCceEEEEcC
Q 011256 260 EDG------NYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHP 331 (490)
Q Consensus 260 ~~~------~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 331 (490)
... .......+..|...|.+++|+|+ +.+|++++.||.|++||++++..+..+.... ..+|...+.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 764 22223344679999999999999 7899999999999999999999888776431 122357899999999
Q ss_pred CC-cEEEEEcCCC---cEEEEECCCC-ceeeeec-CCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCCcceeeeecC
Q 011256 332 DG-LILGTGTSEA---LVKIWDVKSQ-ANVAKFD-GHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 332 ~~-~~l~~g~~dg---~i~iwd~~~~-~~~~~~~-~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~ 403 (490)
++ .++++++.|+ .|++||++++ ..+..+. +|...|++++|+| ++.+|++++.|+ |++||+++++.+..+..+
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 97 6999999998 9999999986 6777777 8999999999999 899999999998 999999999988888766
Q ss_pred CCCCCeeEEEEcCCC-CEEEEEecC--eEEEEEeecCCcceEee-----------eecC------------------CCC
Q 011256 404 DSETPTNSVDFDHSG-SYLAVASAD--IRVYQVASVKADWNCIK-----------TFPD------------------LSG 451 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~-~~l~~~~~d--i~v~~~~~~~~~~~~~~-----------~~~~------------------~~~ 451 (490)
...|.+++|+|++ .+|++++.| +++|++........... .+.. ..+
T Consensus 305 --~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (416)
T 2pm9_A 305 --GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWY 382 (416)
T ss_dssp --SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTT
T ss_pred --CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccc
Confidence 6789999999999 899999988 99999865332111100 0000 003
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
...+.+++|+|+|++|++++.||.|+||++..+
T Consensus 383 ~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 383 GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 556789999999999999999999999999764
No 35
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.9e-39 Score=319.16 Aligned_cols=290 Identities=16% Similarity=0.181 Sum_probs=226.6
Q ss_pred cCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcE--EEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 011256 184 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQI--VTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 184 ~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~ 259 (490)
..|...|+||+|+| ++++||+|+.||.|+|||+.++.. ...+.+|.+.|++|+|+| ++.+|++|+.||+|++||+.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 45778899999999 567999999999999999977653 455678999999999998 68899999999999999997
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc-EEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGT 338 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 338 (490)
+. ..........+...+.+++|+|++.+|++|+.||.|++||++... +.. ..+|...|.+++|+|++. +|++
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~-----~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 196 GN-ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWN-----LRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp SC-EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCC-----SBCCSSCEEEEEECTTCSSEEEE
T ss_pred CC-ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEE-----EecccceEEeeeecCCCceEEEE
Confidence 63 112222222344568899999999999999999999999997543 222 346778999999999875 7889
Q ss_pred EcCCCcEEEEECCCCceeeee---cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC----CCCee
Q 011256 339 GTSEALVKIWDVKSQANVAKF---DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----ETPTN 410 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----~~~i~ 410 (490)
|+.|+.|++||+++.+....+ .+|...|++++|+|+|.+|++++.|+ |+|||++++.....+..+.. ...+.
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence 999999999999887654433 56889999999999999999999998 99999999887766654432 12234
Q ss_pred EEEEcCCCCEEEEEec-----------C---eEEEEEeecCCcceEeeeecCCCCCcceEEE-EEcCCCCeEEEEeCCCc
Q 011256 411 SVDFDHSGSYLAVASA-----------D---IRVYQVASVKADWNCIKTFPDLSGTGKATCV-KFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~-----------d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~ 475 (490)
...|+|++.++++++. + |++|+. .....+..+..+ |...|.++ +|+|+|.+|++|+ |+.
T Consensus 349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~----~~g~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDG----NSGKMMCQLYDP-ESSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECS----SSCCEEEEECCS-SCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEEC----CCCcEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc-CCc
Confidence 5677888877777642 1 889987 444555555432 36677777 6999999999876 889
Q ss_pred EEEecCCCCCC
Q 011256 476 LRVFGLPGNDA 486 (490)
Q Consensus 476 v~iw~~~~~~~ 486 (490)
|+||++..+..
T Consensus 423 i~iW~~~~gk~ 433 (435)
T 4e54_B 423 ILIWSQQEART 433 (435)
T ss_dssp EEECCCC----
T ss_pred EEEEECCcCee
Confidence 99999987754
No 36
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=303.73 Aligned_cols=239 Identities=20% Similarity=0.256 Sum_probs=206.5
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
|..+|.+++|+|++ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++++|+|+|++|++|+.||+|++||+.++
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ 159 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 56789999999984 67899999999999998876543 34589999999999999999999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 339 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 339 (490)
.++..+.+|...|++++|+|++ .+|++++.||+|++||+++++....+... .+...+.+++|+| ++.+|++|
T Consensus 160 ---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 160 ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---APGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp ---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEE
T ss_pred ---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc---eeeccceeeeecCCCCcceEEe
Confidence 7888999999999999999988 47899999999999999999888776532 3346789999999 46789999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
+.||.|++||+++++++..+.+|...|++++|+|++ ++|++|+.|+ |+|||+++++... + ..|...|.+++|+|+
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~--~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S--QAHRDFVRDATWSPL 310 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E--CCCSSCEEEEEECSS
T ss_pred ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E--cCCCCCEEEEEEeCC
Confidence 999999999999999999999999999999999997 5899999998 9999999886543 3 345789999999999
Q ss_pred CC-EEEEEecC--eEEEEEe
Q 011256 418 GS-YLAVASAD--IRVYQVA 434 (490)
Q Consensus 418 ~~-~l~~~~~d--i~v~~~~ 434 (490)
+. +|++++.| |++|++.
T Consensus 311 ~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp STTEEEEEETTSCEEEEECC
T ss_pred CCeEEEEEcCCCeEEEEECC
Confidence 86 56788888 9999984
No 37
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-37 Score=297.78 Aligned_cols=251 Identities=22% Similarity=0.384 Sum_probs=220.7
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
+...++.+|.+.|.+++|+|++++|++|+.||+|++||..+. .....+..|...|.+++|+|++++|++|+.|+.++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 346788899999999999999999999999999999999876 67778888999999999999999999999999999
Q ss_pred EEeCCCCe----EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC
Q 011256 300 FYDLSSGI----CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 300 iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 375 (490)
+|++.++. ....+ .+|...+.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus 123 iw~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 123 IYNLKTREGNVRVSREL-----AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEETTTCSBSCEEEEEE-----ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEECccCCCcceeEEEe-----cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 99998763 22222 25668899999998876 8889999999999999999999999999999999999999
Q ss_pred CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCC
Q 011256 376 YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGT 452 (490)
Q Consensus 376 ~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
.+|++|+.|+ |++||++++.....+..+ ...|.+++|+|++.+|++++.| +++|++ .....+..+....+.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~----~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDL----RADQELMTYSHDNII 270 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECCTTCC
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCC--cCCEEEEEEcCCCCEEEEEcCCCcEEEEEC----CCCcEEEEEccCCcc
Confidence 9999999998 999999999888887765 6789999999999999999998 999998 344455555433335
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 453 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
..|++++|+|+|++|++|+.||.|++||+....
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 579999999999999999999999999987643
No 38
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-38 Score=299.02 Aligned_cols=286 Identities=18% Similarity=0.248 Sum_probs=243.2
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
|..+|.+++|+|+|++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++|++.......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 345789999999999999998888887877666555555557999999999999999999999 9999999998764434
Q ss_pred eeeeec--ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 266 CKHTLK--DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 266 ~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
....+. .|...|.+++|+|++++|++++.||.|++||+.++....... ...|...+.+++|+|++.+|++++.||
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCCC
Confidence 444444 789999999999999999999999999999999887332222 123457899999999999999999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
.|++||+++++.+..+..|...|.+++|+|++.+|++++.++ |++||+++++....+.. ...+.+++|+|++.+++
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEE
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEE
Confidence 999999999999999999999999999999999999999998 99999999988777654 57899999999999999
Q ss_pred EEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 423 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 423 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+++.+ +++|++.. ... ..+.. +...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 241 ~~~~~~~i~~~~~~~----~~~-~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 241 VGMESSNVEVLHVNK----PDK-YQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEETTSCEEEEETTS----SCE-EEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEcCCCcEEEEECCC----CCe-EEEcC--CccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 99987 99999743 222 23444 37789999999999999999999999999998764
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8e-38 Score=305.54 Aligned_cols=279 Identities=18% Similarity=0.300 Sum_probs=236.0
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
.+.+++|++ ..+++++.||.|++||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.++ ..+
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~ 169 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKL 169 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEE
Confidence 355666664 5677888999999999999998877765 8899999999999999999999999999999886 677
Q ss_pred eeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC-CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEE
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 346 (490)
..+.+|...|.+++|+ +.+|++++.||.|++||++. +.....+. +|...|.+++|+|++.+|++|+.||.|+
T Consensus 170 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 170 RTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-----GHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 8888999999999994 68999999999999999984 44455544 4558899999999999999999999999
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEcCCC-CEEEEEe--CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 347 IWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
+||+++++.+..+..|...|.+++|+|++ .++++++ .++ |++||+++++.+..+.. ...+.+++|+|++.+++
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEE
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEE
Confidence 99999999999999999999999999976 5666655 567 99999999988888764 56899999999999999
Q ss_pred EEe--cC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 423 VAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 423 ~~~--~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
+++ .+ +++|++... .......+..| ...|.+++|+|+|.+|++++.||.|++|++..++.
T Consensus 320 ~~~g~~dg~i~v~~~~~~--~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSS--GLTKQVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTTCEEEEEEEETT--EEEEEEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred EEeecCCCcEEEEecCCc--cceeEEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 964 45 999998431 12333334444 78899999999999999999999999999987653
No 40
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=315.16 Aligned_cols=291 Identities=14% Similarity=0.207 Sum_probs=235.2
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCC---Cc---EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcE
Q 011256 181 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPS---GQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 253 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 253 (490)
.+..+|.+.|++++|+| ++++|++|+.||.|++||+.+ +. ....+ +|...|.+++|+|++++|++|+.||+|
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 45578999999999999 999999999999999999865 32 22333 489999999999999999999999999
Q ss_pred EEEeCCCCCccceeeeec----------c--cccceEEEE--EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 011256 254 RVWQGSEDGNYDCKHTLK----------D--HTAEVQAVT--VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 319 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~----------~--h~~~v~~l~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 319 (490)
++||+...........+. . +...+.++. +++++.+|++++.||.|++||+++++.+..+... .
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~ 212 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS---P 212 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC---G
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC---C
Confidence 999985210002222221 1 456677777 5578999999999999999999999998888632 2
Q ss_pred CCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec-CCCCCeEEEEEcC----CCCEEEEEeCCC-EEEEECCC
Q 011256 320 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSE----NGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~----~~~~l~~~~~d~-i~iwd~~~ 393 (490)
|...|++++|+|++.+|++|+.||.|++||+++++++..+. .|...|++++|+| ++.+|++++.|+ |++||+++
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 45789999999999999999999999999999999998886 6778999996654 688999999998 99999999
Q ss_pred CcceeeeecCC------------------------CCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec
Q 011256 394 LKNFRSFESSD------------------------SETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 394 ~~~~~~~~~~~------------------------~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 447 (490)
++....+..+. +...|.+++|+ ++.+|++++.| +++|++.... ....+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~ 367 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS----SSKAVI 367 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG----GCEEEE
T ss_pred CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc----cceEEe
Confidence 88777666432 35568999999 78999999988 9999985432 222222
Q ss_pred CC-----------------------------------CCCcceEEEEEcCC--CCeEEEEeCCCcEEEec
Q 011256 448 DL-----------------------------------SGTGKATCVKFGPD--AKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 448 ~~-----------------------------------~~~~~v~~~~~s~~--~~~l~s~~~dg~v~iw~ 480 (490)
.+ .|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 21 15789999999998 78999999999999995
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.9e-37 Score=299.50 Aligned_cols=286 Identities=15% Similarity=0.263 Sum_probs=239.5
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.+....|++++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+.++ ....
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~ 175 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG---SNPR 175 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CCCE
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC---cCce
Confidence 3445578999999999999999999999999999998999999999999999999999999999999999886 5677
Q ss_pred eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC---------------------CCceEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP---------------------EGYTSA 327 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------------~~v~~~ 327 (490)
.+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+.... .+. ..+.++
T Consensus 176 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~ 253 (420)
T 3vl1_A 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE--NPHDGVNSIALFVGTDRQLHEISTSKKNNL 253 (420)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT--BTTCCEEEEEEEECCCSSCGGGCCCCCCTT
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC--CCCCCccEEEEecCCcceeeecccCcccce
Confidence 888999999999999999999999999999999999999888876421 222 345555
Q ss_pred EEcCCCcEEEEEcCCCcEEEEECCCCceeeeec-CCCCCeEEEEEcCCCC-EEEEEeCCC-EEEEECCCCcc-eeeeecC
Q 011256 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGY-YLATAAHDG-VKLWDLRKLKN-FRSFESS 403 (490)
Q Consensus 328 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~-~l~~~~~d~-i~iwd~~~~~~-~~~~~~~ 403 (490)
+|+|++.+|++|+.||.|++||+++++.+..+. .|...|++++|+|++. +|++++.|+ |++||+++++. +..+..+
T Consensus 254 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 254 EFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp CSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 668999999999999999999999998777764 4788999999999998 999999998 99999998754 5556553
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcce-----EeeeecCCCCCcceEEEEEcCCCC---eEEEEeCC
Q 011256 404 DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-----CIKTFPDLSGTGKATCVKFGPDAK---YIAVGSMD 473 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~d 473 (490)
+...+.++.+ +++.+|++++.| +++|++........ ....+.. +.+.|.+++|+|++. .|++++.+
T Consensus 334 -~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 334 -EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVS--NDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp -TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECC--SSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred -CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEcc--CCcceEEEEEccCCCCcceEEEEcCC
Confidence 2567888855 578899999988 99999865322111 1111222 367899999999999 77888889
Q ss_pred CcEEEecCCC
Q 011256 474 RNLRVFGLPG 483 (490)
Q Consensus 474 g~v~iw~~~~ 483 (490)
|.+.+|++..
T Consensus 410 g~~~~~~~~~ 419 (420)
T 3vl1_A 410 NFCALYNLSN 419 (420)
T ss_dssp TEEEEEESCC
T ss_pred ceEEEEeccC
Confidence 9999999865
No 42
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-37 Score=290.81 Aligned_cols=258 Identities=20% Similarity=0.324 Sum_probs=212.8
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--CcEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEEEe
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS--GQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd 257 (490)
+..+|...|++++|+|+|++|++|+.|++|+|||+.. .+.+.++.+|.++|.+++|++ ++++|++|+.||+|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 3567899999999999999999999999999999874 467889999999999999986 488999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC---
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--- 332 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 332 (490)
+.++ .......+.+|...|.+++|+|+ +.+|++++.||.|++||++++....... ..+|...|.+++|+|+
T Consensus 84 ~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 84 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp BSSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE---EECCSSCEEEEEECCCC--
T ss_pred cCCC-ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee---eecccCccceEeecCCccc
Confidence 9864 22355667789999999999997 8899999999999999998763221111 2256688999999997
Q ss_pred ----------CcEEEEEcCCCcEEEEECCCCc----eeeeecCCCCCeEEEEEcCCC---CEEEEEeCCC-EEEEECCCC
Q 011256 333 ----------GLILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSENG---YYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 333 ----------~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~---~~l~~~~~d~-i~iwd~~~~ 394 (490)
+.+|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.|+ |+|||++..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 5799999999999999998765 566788999999999999984 8999999998 999999875
Q ss_pred cc---eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEee
Q 011256 395 KN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIK 444 (490)
Q Consensus 395 ~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~ 444 (490)
.. ...+....+...+.+++|+|+|++|++++.| ++||+.... ..|.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~-g~w~~~~ 293 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE-GKWEPAG 293 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT-SCEEEC-
T ss_pred CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC-CcEEecc
Confidence 32 1222223346789999999999999999998 999997432 2344443
No 43
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-38 Score=311.06 Aligned_cols=289 Identities=15% Similarity=0.293 Sum_probs=245.0
Q ss_pred CCeEEEEecCCCC-EEEEE----------eCCCcEEEEeCCCCc---EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcE
Q 011256 188 PGIVSLDIHYSKD-VIATG----------GVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTV 253 (490)
Q Consensus 188 ~~I~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 253 (490)
..|.+++|+|++. +|++| +.||.|++||+.++. .+..+ .|...|.+++|+|++.+|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3688999999987 99999 889999999998875 33333 588999999999999999999999999
Q ss_pred EEEeCCCCCc-cceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCe------EEEEeecCCCCCCCCCce
Q 011256 254 RVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGI------CLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 254 ~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~ 325 (490)
++|++..... ......+.+|...|.+++|+|+ +.+|++++.||.|++||+.++. ....+ .....|...|.
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~ 169 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP--GQSMSSVDEVI 169 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC--CCSCCSSCCCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc--ccccCCCCCee
Confidence 9999987211 1477788899999999999998 8999999999999999999876 32222 12345678999
Q ss_pred EEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeecCC------CCCeEEEEEcCCC-CEEEEEeCC----CEEEEECCC
Q 011256 326 SAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGH------VGAVTAISFSENG-YYLATAAHD----GVKLWDLRK 393 (490)
Q Consensus 326 ~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~~-~~l~~~~~d----~i~iwd~~~ 393 (490)
+++|+|+ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999998 789999999999999999999998888766 7899999999997 689999887 599999998
Q ss_pred C-cceeeeecCCCCCCeeEEEEcC-CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC-CeEE
Q 011256 394 L-KNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA-KYIA 468 (490)
Q Consensus 394 ~-~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 468 (490)
. .....+. ..+...|.+++|+| ++.+|++++.| +++|++ .....+..+..| ...|.+++|+|++ .+|+
T Consensus 250 ~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~----~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~ 322 (416)
T 2pm9_A 250 ANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP----ESAEQLSQFPAR--GNWCFKTKFAPEAPDLFA 322 (416)
T ss_dssp TTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS----SSCCEEEEEECS--SSCCCCEEECTTCTTEEE
T ss_pred CCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC----CCCccceeecCC--CCceEEEEECCCCCCEEE
Confidence 6 4455554 12377899999999 99999999988 999998 445667777665 7789999999999 8999
Q ss_pred EEeCCCcEEEecCCCCCC
Q 011256 469 VGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 469 s~~~dg~v~iw~~~~~~~ 486 (490)
+++.||.|++|++.....
T Consensus 323 s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ECCSSSEEEEEESCCCCC
T ss_pred EEecCCcEEEEEccCCCC
Confidence 999999999999987654
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.1e-37 Score=289.11 Aligned_cols=243 Identities=22% Similarity=0.365 Sum_probs=218.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+..
T Consensus 61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-- 138 (319)
T 3frx_A 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-- 138 (319)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--
T ss_pred EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccceeeeecccccceEEEEEecC------CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
.++..+.+|...|.++.|+|. +.++++++.|+.|++||++++.....+. +|...|.+++|+|++.+|
T Consensus 139 --~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 139 --QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-----GHNSNINTLTASPDGTLI 211 (319)
T ss_dssp --CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-----CCCSCEEEEEECTTSSEE
T ss_pred --CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-----CCCCcEEEEEEcCCCCEE
Confidence 577788899999999999985 4489999999999999999988777664 566899999999999999
Q ss_pred EEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecC------CCCCCee
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS------DSETPTN 410 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~------~~~~~i~ 410 (490)
++|+.||.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.+++++|++........+... .+...+.
T Consensus 212 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 290 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV 290 (319)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCccee
Confidence 99999999999999999999888754 6899999999999999999888999999877665554322 1245688
Q ss_pred EEEEcCCCCEEEEEecC--eEEEEEee
Q 011256 411 SVDFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
+++|+|+|++|++|+.| |+||++.+
T Consensus 291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEeecCceEEEEEEee
Confidence 99999999999999999 99999843
No 45
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=292.98 Aligned_cols=260 Identities=22% Similarity=0.357 Sum_probs=215.8
Q ss_pred cEEEEeccCcc-CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeE
Q 011256 220 QIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 220 ~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 298 (490)
.++.++.+|.. .|.+++|+|+|++|++|+.||+|+|||+..+..........+|...|.+++|+|++++|++|+.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 46778889988 99999999999999999999999999987742111222336899999999999999999999999999
Q ss_pred EEEeCCCCeE--EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCCeEEEEEcC
Q 011256 299 CFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSE 373 (490)
Q Consensus 299 ~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~ 373 (490)
++||+..+.. +..+ .+|...|.+++|+|++.+|++|+.|+.|++||++++ ..+..+.+|...|.+++|+|
T Consensus 86 ~iw~~~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTL-----EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp EEEEECCC-EEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred EEEEccCCCeEEEEEc-----cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 9999987753 3333 356789999999999999999999999999999876 34567788999999999999
Q ss_pred CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecC-----------Cc
Q 011256 374 NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK-----------AD 439 (490)
Q Consensus 374 ~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~-----------~~ 439 (490)
++.+|++++.|+ |++||++............+...|.+++|+|+|++|++++.| ++||+..... ..
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 999999999998 999999887644333333447899999999999999999999 9999974322 12
Q ss_pred ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+.++..+... |...|.+++|+|++..|++++.|+.|++|++..+.
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 3444455442 47789999999999999999999999999987653
No 46
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.6e-37 Score=300.07 Aligned_cols=276 Identities=19% Similarity=0.345 Sum_probs=236.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe--ccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTL--SGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
.++.|+|+++ ++|++|. |++|+|||..+++....+ .+|...|++|+|+|+|++|++|+.||+|+|||+.++ ++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cE
Confidence 4678999975 6888775 899999999999887765 467888999999999999999999999999999886 78
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE-EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
+..+.+|...+.++.++ +.++++|+.|+.+.+||....... ..+. +|...+..+.++|++.++++++.||.|
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-----~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-----ccccceeeeeecCCCCeeeeeeccccc
Confidence 88899999999998875 789999999999999998875543 3333 456889999999999999999999999
Q ss_pred EEEECCCCc----eeeeecCCCCCeEEEEEcCCC-CEEEEE--eCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 346 KIWDVKSQA----NVAKFDGHVGAVTAISFSENG-YYLATA--AHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 346 ~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~~-~~l~~~--~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
++||..+++ .+.....|...|.+++|+|++ .+++++ +.|+ |++||++++.....+.. ...+.++.|+++
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~ 331 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPH 331 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETT
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCC
Confidence 999998764 345567789999999999974 555554 3567 99999999998888876 467899999999
Q ss_pred CCEEEEEe--cC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 418 GSYLAVAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 418 ~~~l~~~~--~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+..+++++ .+ |+||++ .....+..+.+| .+.|++++|+|||.+|++|+.||+|+||++...+
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~----~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKY----PTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TTEEEEEECTTTCCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred CCeEEEEEecCCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 99998876 34 999998 567788888876 7899999999999999999999999999997644
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-38 Score=312.74 Aligned_cols=284 Identities=12% Similarity=0.187 Sum_probs=237.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
..+++++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.++ ...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~ 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQR 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---cee
Confidence 34567999999999999999999999999887666666656 44555578999999999999999999999875 667
Q ss_pred eeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEE
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 347 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 347 (490)
..+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. +|...|.+++|+|++.+|++|+.||.|++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 7778999999999999999999999999999999999998877775 45688999999999999999999999999
Q ss_pred EECCCCceeeeecC---CCCCeEE---------------------EEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 348 WDVKSQANVAKFDG---HVGAVTA---------------------ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 348 wd~~~~~~~~~~~~---~~~~i~~---------------------l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
||+++++.+..+.. +...|.+ ++|+|++.+|++++.++ |++||+++.+....+..
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 99999998888864 3344444 45578999999999998 99999999887766654
Q ss_pred CCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 403 SDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 403 ~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
.+...+.+++|+|++. +|++++.+ +++|++..... .+..+..+ +...|.++.| +++++|++++.||.|++|
T Consensus 288 -~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 288 -KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLD 361 (420)
T ss_dssp -TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEE
T ss_pred -ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEE
Confidence 2367899999999999 99999988 99999844322 23344443 3667888855 578899999999999999
Q ss_pred cCCCCCC
Q 011256 480 GLPGNDA 486 (490)
Q Consensus 480 ~~~~~~~ 486 (490)
++.....
T Consensus 362 ~~~~~~~ 368 (420)
T 3vl1_A 362 IISDPES 368 (420)
T ss_dssp EECCTTC
T ss_pred eccCCCC
Confidence 9987543
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.2e-37 Score=292.16 Aligned_cols=297 Identities=16% Similarity=0.219 Sum_probs=225.3
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVR 254 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~ 254 (490)
.+..+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 456789999999999999999999999999999999876 46778889999999999999 699999999999999
Q ss_pred EEeCCCCCc------cceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEee--------cCCCC
Q 011256 255 VWQGSEDGN------YDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVS--------DAGTD 318 (490)
Q Consensus 255 iwd~~~~~~------~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~ 318 (490)
+||+..+.. +.....+..|...|.+++|+|+ +.+|++++.||.|++||++++..+..+. .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999987521 2456777889999999999999 9999999999999999998876433221 11123
Q ss_pred CCCCCceEEEEcCC---CcEEEEEcCCCcEEEEECCCCce--eeeecCCCCCeEEEEEcCCC----CEEEEEeCCC-EEE
Q 011256 319 GRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKL 388 (490)
Q Consensus 319 ~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~----~~l~~~~~d~-i~i 388 (490)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++++.|+ |++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 56678999999997 89999999999998888877765 67778899999999999998 8999999998 999
Q ss_pred EECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 389 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
||++........... ........+++....+..+..+ +.+|+. .....+..+..| ...|++++|+|
T Consensus 245 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN----LQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC-----------------------------------------CCS----EEEEEEEEECTT--SSCEEEEEECS
T ss_pred EeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeeccc----ccccEEEEEecc--cccEEEEEEcC
Confidence 999876544333222 2233334444444444444333 233322 334566666665 77899999999
Q ss_pred CCCeEEEEeCCCcEEEecCCCCC
Q 011256 463 DAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 463 ~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
++++|++|+.||.|++|++..+.
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCEEEEecCCCcEEEEecCcCc
Confidence 99999999999999999998754
No 49
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-37 Score=305.46 Aligned_cols=290 Identities=20% Similarity=0.356 Sum_probs=230.4
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEeccCc------------cCEEEEEEeeCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----------IVTTLSGHS------------KKVTSVKFVTEG 241 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~~~~ 241 (490)
.|.+.|++++|+|+|++|++|+.||.|+|||+.++. ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 356799999999999999999999999999998776 578889998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEeCCCCCcc------------------------------------ceeee-ecccccceEEEEE
Q 011256 242 --DLFLTGSADKTVRVWQGSEDGNY------------------------------------DCKHT-LKDHTAEVQAVTV 282 (490)
Q Consensus 242 --~~l~s~s~dg~i~iwd~~~~~~~------------------------------------~~~~~-~~~h~~~v~~l~~ 282 (490)
.+|++++.||+|++|++...... .+... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998653110 00112 3579999999999
Q ss_pred ecCCCEEEEEECCCeEEEEeCCC-CeEEEEee--cCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCce---
Q 011256 283 HATNKYFVTASLDNTWCFYDLSS-GICLTQVS--DAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQAN--- 355 (490)
Q Consensus 283 ~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~--- 355 (490)
+|++++|++| .||.|++||++. +..+..+. .....+|...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 899999999994 43443321 11133567889999999998 9999999999999999999886
Q ss_pred -eeeecCCCC------------CeEEEEEcCCCCEEEEEeCCC-EEEEECCC-CcceeeeecCCCCC-------------
Q 011256 356 -VAKFDGHVG------------AVTAISFSENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSET------------- 407 (490)
Q Consensus 356 -~~~~~~~~~------------~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~------------- 407 (490)
+..+..|.. .|.+++|+|+|.+|++++. + |++||+++ .+.+..+..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 677887775 8999999999999999999 7 99999997 77777777653111
Q ss_pred CeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec-------------------------------CCCCCcc
Q 011256 408 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP-------------------------------DLSGTGK 454 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~ 454 (490)
.+..++|+|++.+|++|+.| +++|++... ..+. +. .......
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTK----RDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTC----CEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCC----ccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 13349999999999999998 999998432 2111 11 1122457
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 455 ATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 455 v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
|.+++|+|++.+|++++.++ +++|.-.
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eeEEEECCCCCEEEEEecce-eeeeccc
Confidence 89999999999999998765 8888643
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=295.63 Aligned_cols=291 Identities=21% Similarity=0.327 Sum_probs=235.2
Q ss_pred ccccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEe-------------ccCccCEEEEEEee-CCCEEE
Q 011256 181 PLHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTL-------------SGHSKKVTSVKFVT-EGDLFL 245 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~~~-~~~~l~ 245 (490)
.....|.+.|++++|+| ++++|++|+.||.|++||+.++.....+ .+|...|.+++|+| ++.+|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 45667999999999999 9999999999999999999877554333 25999999999999 777999
Q ss_pred EEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC---CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC
Q 011256 246 TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN---KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE 322 (490)
Q Consensus 246 s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 322 (490)
+++.||.|++||+.+. .....+. +...+.++.++|.+ .++++++.||.|++||+.++..+..+. .|..
T Consensus 117 s~~~d~~i~iwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~ 187 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTL---QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-----GHRQ 187 (408)
T ss_dssp EEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-----CCCS
T ss_pred EEeCCCeEEEeeCCCC---ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-----CCCC
Confidence 9999999999999885 4555444 77889999999854 499999999999999999988777665 4558
Q ss_pred CceEEEEcCCCc-EEEEEcCCCcEEEEECCCCc-eeeee---------------cCCCCCeEEEEEcCCCCEEEEEeCCC
Q 011256 323 GYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQA-NVAKF---------------DGHVGAVTAISFSENGYYLATAAHDG 385 (490)
Q Consensus 323 ~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~l~~s~~~~~l~~~~~d~ 385 (490)
.|.+++|+|++. +|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++.+|++++.|+
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 267 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC
Confidence 899999999998 69999999999999998765 33333 46888999999999999999999998
Q ss_pred -EEEEECCCCcceeeeecCCC----CCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEE
Q 011256 386 -VKLWDLRKLKNFRSFESSDS----ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 459 (490)
Q Consensus 386 -i~iwd~~~~~~~~~~~~~~~----~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 459 (490)
|++||+++++....+..... ......+.....+.+++++... +++|++ .....+..+..| .+.|++++
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----~~~~~~~~~~~~--~~~v~~~~ 341 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV----YSGEQITMLKGH--YKTVDCCV 341 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET----TTCCEEEEECCC--SSCEEEEE
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC----cCCcceeeeccC--CCeEEEEE
Confidence 99999998876554433211 1122233333445555555544 999998 556677777765 78999999
Q ss_pred EcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 460 FGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 460 ~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
|+|++++|++|+.||.|++|++...+.
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC---
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 999999999999999999999987654
No 51
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.9e-36 Score=283.20 Aligned_cols=254 Identities=26% Similarity=0.521 Sum_probs=222.5
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeE
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 298 (490)
.....++.+|...|++++|+|++++|++|+.||.|++|+..++ .....+.+|...|.+++|+|++++|++++.||.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 4556788899999999999999999999999999999999876 6677888999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEE
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 378 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 378 (490)
++||+.+++.+..+. +|...|.+++|+|++.+|++|+.||.|++||+++++.+..+..|..+|.+++|+|++.+|
T Consensus 90 ~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
T 4ery_A 90 KIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164 (312)
T ss_dssp EEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEE
Confidence 999999999888775 345789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcce
Q 011256 379 ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKA 455 (490)
Q Consensus 379 ~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v 455 (490)
++++.|+ |++||+++++.+..+... +...+..++|+|++++|++++.+ +++|++ .....+..+..|......
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~~~~~~~~~~~~~~~~ 239 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDY----SKGKCLKTYTGHKNEKYC 239 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEET----TTTEEEEEECSSCCSSSC
T ss_pred EEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEEC----CCCcEEEEEEecCCceEE
Confidence 9999998 999999998877666433 25679999999999999999988 999998 456667777766433332
Q ss_pred EEEEE-cCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 456 TCVKF-GPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 456 ~~~~~-s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
....+ .+++.+|++|+.||.|++|++..+.
T Consensus 240 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 240 IFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp CCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred EEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 33334 4688999999999999999998654
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-36 Score=324.30 Aligned_cols=288 Identities=17% Similarity=0.293 Sum_probs=254.2
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++++|++|+.||.|++||+.++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTG 339 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g 339 (490)
..+..+.+|...|++++|+|++++|++++.||.|++||+.++ .....+. +|...|.+++|+| ++..|+++
T Consensus 88 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 88 ---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-----GHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp ---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-----CCSSCEEEEEEETTEEEEEEEE
T ss_pred ---cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-----CCCCcEEEEEEEcCCCCEEEEE
Confidence 677888899999999999999999999999999999999987 4444443 4557899999999 88999999
Q ss_pred cCCCcEEEEECCCCceeeeecCCC-CCeEEEEEcC--CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHV-GAVTAISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
+.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.++ |++||+++++....+..+ ...+.+++|+
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~ 237 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFH 237 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEEEEC
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEc
Confidence 999999999999888777776554 8999999999 999999999998 999999999888888765 6789999999
Q ss_pred CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe-EEEEeCCCcEEEecCCCCC
Q 011256 416 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY-IAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~ 485 (490)
|++.+|++++.+ +++|++ ..+.....+..+ ...+.+++|+|++.. +++++.|+.+.+|++..+.
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNS----STYKVEKTLNVG--LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp SSSSEEEEEETTSCEEEEET----TTCSEEEEECCS--SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCCCEEEEEeCCCeEEEEEC----CCCcEEEEeecC--CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 999999999987 999997 455666666665 678999999999874 2444557789999886543
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2e-36 Score=301.52 Aligned_cols=283 Identities=21% Similarity=0.397 Sum_probs=238.8
Q ss_pred ccCCCCC-eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 183 HKTSKPG-IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 183 ~~~h~~~-I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
..+|... +.++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++||+.++
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence 3456655 566666 47899999999999999999999999999999999999999888 8999999999999999886
Q ss_pred CccceeeeecccccceEEEEEe--cCCCEEEEEECCCeEEEEeCCCCeEEEEeec------------------CCCCCCC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVH--ATNKYFVTASLDNTWCFYDLSSGICLTQVSD------------------AGTDGRP 321 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~ 321 (490)
.+...+.+|...|.+++|+ +++.++++|+.||.|++||+.++........ ....+|.
T Consensus 194 ---~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 194 ---CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp ---EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred ---cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 6788889999999999998 4778999999999999999988764322100 0022445
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeee
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 400 (490)
..+.++ ++++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.|+ |++||+++++.+..+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 566655 67889999999999999999999999999999999999999999999999999998 999999999988888
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 401 ESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
..+ ...|.++.|+ +.+|++++.| +++|++.. ........ +...+..++|++++.+|++|+ ||.|++
T Consensus 349 ~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~----~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 349 QGH--TALVGLLRLS--DKFLVSAAADGSIRGWDAND----YSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp CCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTT----CCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred eCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCC----Cceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 765 7789999997 6899999988 99999843 33333332 255677889999999999998 999999
Q ss_pred ecCCCCC
Q 011256 479 FGLPGND 485 (490)
Q Consensus 479 w~~~~~~ 485 (490)
|++.+++
T Consensus 417 wd~~~g~ 423 (464)
T 3v7d_B 417 YNLRSGK 423 (464)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9998875
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-36 Score=290.32 Aligned_cols=281 Identities=12% Similarity=0.144 Sum_probs=238.2
Q ss_pred ccccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---EEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEE
Q 011256 181 PLHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVW 256 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw 256 (490)
.+...|.+.|++++|+|++++|++++.||.|++|++.++. ....+.+|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3456889999999999999999999999999999998877 3455568999999999999999 99999999999999
Q ss_pred eC-CCCCccceeeeecc--cccceEEEEEecCCCEEEEEECCCeEEEEeCCC---------CeEEEEeecCCCCCCCCCc
Q 011256 257 QG-SEDGNYDCKHTLKD--HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS---------GICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 257 d~-~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~~~~v 324 (490)
|+ ..+ ....+.+ |...|.+++|+| +.+|++++.||.|++||+++ +..+..+ .+...+
T Consensus 85 d~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~v 153 (342)
T 1yfq_A 85 DLIGSP----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT------KVKNKI 153 (342)
T ss_dssp CSSSSS----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS------SSCCCE
T ss_pred EeccCC----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE------eeCCce
Confidence 99 764 3366778 999999999999 99999999999999999886 4433332 255889
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECCC-Cce--eeeecCCCCCeEEEEEcC-CCCEEEEEeCCC-EEEEECCCC-----
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSE-NGYYLATAAHDG-VKLWDLRKL----- 394 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~~----- 394 (490)
.+++|+|++ +++++.||.|++||+++ +.. ......|...|.+++|+| ++.++++++.++ |++||++..
T Consensus 154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 999999987 89999999999999998 543 334456788999999999 999999999998 999999887
Q ss_pred -cceeeeecCCC-------CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 395 -KNFRSFESSDS-------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 395 -~~~~~~~~~~~-------~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
+....+..+.. ...|.+++|+|++++|++++.+ +++|++ .....+..+..| |...|.+++ |++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~----~~~~~~~~~~~~-h~~~v~~~~--~~~ 304 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL----QTRKKIKNFAKF-NEDSVVKIA--CSD 304 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC-SSSEEEEEE--ECS
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC----ccHhHhhhhhcc-cCCCceEec--CCC
Confidence 66667766532 3489999999999999999988 999998 556667776654 267899999 999
Q ss_pred CeEEEEeCCCc-EEEecC
Q 011256 465 KYIAVGSMDRN-LRVFGL 481 (490)
Q Consensus 465 ~~l~s~~~dg~-v~iw~~ 481 (490)
++|++|+.||. .+.|..
T Consensus 305 ~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 305 NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SEEEEEEECTHHHHCSSS
T ss_pred CeEEEEecCCcccccccc
Confidence 99999999999 655554
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.1e-37 Score=295.32 Aligned_cols=242 Identities=17% Similarity=0.253 Sum_probs=205.5
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE----EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
..|...|++++|+|++.+ ++++.||+|+|||+.+++... ...+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 91 ~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 357789999999998765 457789999999998876543 345899999999999999999999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC-CcEEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLILG 337 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 337 (490)
++ .++..+.+|...|++++|+|++. ++++++.||.|++||+++++....+. ...+...+.+++|+|+ +.+|+
T Consensus 170 ~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 170 QK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp TT---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEE
T ss_pred CC---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccccccccchhhhhcccceEE
Confidence 86 78888899999999999999875 78999999999999999988766554 2345578999999997 57899
Q ss_pred EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEc
Q 011256 338 TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s 415 (490)
+|+.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++.|+ |+|||+++++.+..+ .|...|++++|+
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafs 320 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWS 320 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEEC
T ss_pred EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEe
Confidence 99999999999999999999999999999999999987 6899999998 999999988776554 347899999999
Q ss_pred C-CCCEEEEEecC--eEEEEEee
Q 011256 416 H-SGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 416 ~-~~~~l~~~~~d--i~v~~~~~ 435 (490)
| ++.+|++++.| |++|++..
T Consensus 321 P~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 321 PLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCCEEEEEcCCCeEEEEECCC
Confidence 8 79999999998 99999854
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-36 Score=288.88 Aligned_cols=252 Identities=22% Similarity=0.339 Sum_probs=219.3
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
+....+.+|...|.+++|+|++.+|++|+.||+|++||..+. .....+..|...|.+++|+|++.++++|+.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 456678899999999999999999999999999999998876 56667778899999999999999999999999999
Q ss_pred EEeCCCCe------EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC
Q 011256 300 FYDLSSGI------CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE 373 (490)
Q Consensus 300 iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 373 (490)
+|++.... ....+ .+|...|.++.|+|++..|++|+.||.|++||+++++.+..+.+|...|.+++|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 206 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSV-----AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206 (354)
T ss_dssp EEECCCCTTCCSGGGCEEE-----EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred EEEEeccccccccccceee-----eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence 99986532 11222 24568899999999999999999999999999999999999999999999999988
Q ss_pred --CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecC
Q 011256 374 --NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 374 --~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~ 448 (490)
+|.+|++|+.|+ |++||+++++++..+..+ ...|.+++|+|++.+|++++.| +++|++ .....+..+..
T Consensus 207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~----~~~~~~~~~~~ 280 (354)
T 2pbi_B 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDL----RADREVAIYSK 280 (354)
T ss_dssp CSSCCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEET----TTTEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEEC----CCCcEEEEEcC
Confidence 478999999998 999999999988887665 6789999999999999999998 999998 33444445544
Q ss_pred CCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 449 LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 449 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+.+...+.+++|+|+|.+|++|+.||.|++||+..+.
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 4345578999999999999999999999999997653
No 57
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=281.26 Aligned_cols=277 Identities=18% Similarity=0.343 Sum_probs=231.2
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
.++|+||+++ +|++| .|++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++|++.++ +++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeE
Confidence 5789999875 77776 48999999999999887664 67888999999999999999999999999999887 788
Q ss_pred eeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEE
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 347 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 347 (490)
..+.+|...+.++.+ ++..+++++.++.+.+|+........... .+|...+.++.+++++.+|++++.||.|++
T Consensus 103 ~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL----SGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176 (318)
T ss_dssp EEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEE----cCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence 888999998887665 47899999999999999998765443332 245588999999999999999999999999
Q ss_pred EECCCCce----eeeecCCCCCeEEEEEcCCCC-EEE--EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 348 WDVKSQAN----VAKFDGHVGAVTAISFSENGY-YLA--TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 348 wd~~~~~~----~~~~~~~~~~i~~l~~s~~~~-~l~--~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
||+++++. ......+.+.|.++.++|++. .+. +++.++ |++||.+.......... ...+..+.|++++.
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYK 253 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc---eeeeeeeeeccccc
Confidence 99988753 334456788999999999754 333 344456 99999998877666554 56799999999999
Q ss_pred EEEEEe--cC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 420 YLAVAS--AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 420 ~l~~~~--~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
.+++++ .| ++||++ .....+..+.+| .+.|++++|+|+|++|++|+.||+|+|||+...+|
T Consensus 254 ~~~~~sg~~d~~i~iwd~----~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKY----PTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp EEEEEECTTTCCEEEEET----TTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred ceEEEEEcCCCEEEEEEC----CCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 988775 34 999998 567778888876 78999999999999999999999999999977653
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-36 Score=282.48 Aligned_cols=252 Identities=16% Similarity=0.216 Sum_probs=207.5
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec--CCCEEEEEECCCeEEE
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCF 300 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~i 300 (490)
..+.+|...|.+++|+|+|++|++|+.|++|+|||+... ...++..+.+|.++|++++|+| ++++|++|+.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 457789999999999999999999999999999998752 2256778899999999999976 3899999999999999
Q ss_pred EeCCCCeE--EEEeecCCCCCCCCCceEEEEcCC--CcEEEEEcCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcCC
Q 011256 301 YDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSEN 374 (490)
Q Consensus 301 wd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~ 374 (490)
||++++.. +..+ .+|...|.+++|+|+ +.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 82 WKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99988742 2222 246688999999997 8999999999999999998763 24567789999999999997
Q ss_pred -------------CCEEEEEeCCC-EEEEECCCCc----ceeeeecCCCCCCeeEEEEcCCC---CEEEEEecC--eEEE
Q 011256 375 -------------GYYLATAAHDG-VKLWDLRKLK----NFRSFESSDSETPTNSVDFDHSG---SYLAVASAD--IRVY 431 (490)
Q Consensus 375 -------------~~~l~~~~~d~-i~iwd~~~~~----~~~~~~~~~~~~~i~~i~~s~~~---~~l~~~~~d--i~v~ 431 (490)
+.+|++|+.|+ |++||+++.. ....+.. |...|.+++|+|++ .+|++++.| ++||
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 57999999998 9999998765 3334443 47899999999985 899999998 9999
Q ss_pred EEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 432 QVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
++......+.. ..+....+...|.+++|+|+|++|++++.||.|+||+...
T Consensus 235 d~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEE-EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccce-eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98543222221 1222223477899999999999999999999999999764
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-36 Score=298.55 Aligned_cols=282 Identities=21% Similarity=0.404 Sum_probs=240.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
.+..|..+|+|+.+ +++++++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||+|++||+.++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 45567788999987 6899999999999999999999999999999999999999 7889999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.....+.+|...|.+++|+ +.++++|+.||.|++||+.++........ ..+|...|.+++| ++.++++|+.
T Consensus 204 ---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 204 ---EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp ---CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEE--ECCCSSCEEEEEE--ETTEEEEEET
T ss_pred ---cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeE--ecCCCCcEEEEEe--CCCEEEEEeC
Confidence 6788888999999999996 56999999999999999998765532111 2356688999999 7889999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
||.|++||+++++.+..+.+|...|.++.| ++.++++|+.|+ |++||+++++.+..+..+ ...|.++.| ++.+
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKR 348 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSE
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCE
Confidence 999999999999999999999999999999 578999999998 999999999988888765 678999988 7889
Q ss_pred EEEEecC--eEEEEEeecCCc-----ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 421 LAVASAD--IRVYQVASVKAD-----WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
|++|+.| +++|++...... ...+..+..| .+.|++++| ++.+|++|+.||.|++|++.++..
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999988 999998543311 1155666665 778999999 788999999999999999987653
No 60
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.6e-36 Score=287.31 Aligned_cols=284 Identities=16% Similarity=0.175 Sum_probs=220.7
Q ss_pred CCeEEEEecCCCCEEEEEeCCC-------cEEEEeCCCCcE----------EEEeccCccCEEEEEEeeCCCEEEEEe--
Q 011256 188 PGIVSLDIHYSKDVIATGGVDT-------NAVLFDRPSGQI----------VTTLSGHSKKVTSVKFVTEGDLFLTGS-- 248 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~l~s~s-- 248 (490)
-||+|++|+|++.+|++||.+. .|++|++..+.. ...+.+|...|.++++ +++.+++|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 4899999999999999997543 499999765421 2356788888988876 566677664
Q ss_pred ---------CCCcEEEEeCCCCCc-cceeee-----ecccccceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEE
Q 011256 249 ---------ADKTVRVWQGSEDGN-YDCKHT-----LKDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQ 311 (490)
Q Consensus 249 ---------~dg~i~iwd~~~~~~-~~~~~~-----~~~h~~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~ 311 (490)
.|+.+++|++..... ...... ...+...+.+++|+|+|+++++++ .|++|++||++++..+..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 477899998866432 111111 123445689999999999887654 689999999999999887
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeee--ecCCCCCeEEEEEcCCCCEEEEEeCCC----
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAHDG---- 385 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~d~---- 385 (490)
+.. ...|.+++|+|||.++++++.+ .+.+|+..++..+.. ...|...|.+++|+|++.++++++.++
T Consensus 173 ~~~------~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 173 IET------RGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEC------SSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred eCC------CCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 752 3679999999999999999855 577777777765543 356788999999999999999988763
Q ss_pred -EEEEECCCCcce--eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeee-cCCCCCcceEEEE
Q 011256 386 -VKLWDLRKLKNF--RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF-PDLSGTGKATCVK 459 (490)
Q Consensus 386 -i~iwd~~~~~~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 459 (490)
+++||+...... .......+...|++++|+|+|++|++|+.| |+||++ ....++..+ .+| ...|++++
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~----~~~~~~~~~~~gH--~~~V~~v~ 319 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL----KDLSMSKIFKQAH--SFAITEVT 319 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET----TTTEEEEEETTSS--SSCEEEEE
T ss_pred EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC----CCCcEEEEecCcc--cCCEEEEE
Confidence 677887765432 222233347789999999999999999999 999998 566777765 455 88999999
Q ss_pred EcCCCCeEEEEeCCCcEEEecCCCCCC
Q 011256 460 FGPDAKYIAVGSMDRNLRVFGLPGNDA 486 (490)
Q Consensus 460 ~s~~~~~l~s~~~dg~v~iw~~~~~~~ 486 (490)
|+|||++|++|+.|++|+||+++.+-.
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 999999999999999999999986543
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=311.50 Aligned_cols=288 Identities=11% Similarity=0.070 Sum_probs=222.9
Q ss_pred cCCCCCeEEEEecCC------CCEEEEEeCCCcEEEEeCCCCcE-----------EEEeccCccCEEEEEEeeCCCEEEE
Q 011256 184 KTSKPGIVSLDIHYS------KDVIATGGVDTNAVLFDRPSGQI-----------VTTLSGHSKKVTSVKFVTEGDLFLT 246 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~h~~~v~~l~~~~~~~~l~s 246 (490)
.+|.+.|.+++|+|+ +.+||+|+.||+|++||+..+.. ...+.+|...|++++|+++ ..|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEE
Confidence 456788999999996 57999999999999999976532 2467889999999999986 48999
Q ss_pred EeCCCcEEEEeCCCCCccceeeeecccccceEEE--EEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC
Q 011256 247 GSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV--TVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG 323 (490)
Q Consensus 247 ~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l--~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 323 (490)
|+.||+|++||+.++. .+...+.+|...|.++ .|+|++ .+|++|+.|++|++||++++++...+..... ...
T Consensus 283 gs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~---~~~ 357 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSN 357 (524)
T ss_dssp EETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS---CCS
T ss_pred EeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc---cCc
Confidence 9999999999998642 3445678899999999 567887 8999999999999999998776554432211 124
Q ss_pred ceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 324 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
|.+++|+|++..|++++.|++|++||++++.++..+.+|.+.|++++|+|+|.+|++|+.|+ |++||+... .+.....
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~ 436 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKN 436 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC--
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hcccccc
Confidence 78999999999999999999999999999998888889999999999999999999999998 999998653 2222111
Q ss_pred C---CCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC---eEEEEeCCCcE
Q 011256 403 S---DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK---YIAVGSMDRNL 476 (490)
Q Consensus 403 ~---~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~v 476 (490)
. .....+.+++|+|++..+. ...+..+|... .....+..+.+| ...|.+++|+|++. .|++|+.||.|
T Consensus 437 ~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~---~~g~~~~~l~gh--~~~V~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 437 SSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLT---VNDVSKAKIDAH--GINITCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp ----CCCCEEEECBCCSSSCEEE-ECCCCCCCC----------------C--CCSCCCEEECCSTTTTTEEEEECTTSEE
T ss_pred CccceeeeEEEEeccCCCCCeEE-ccCCceecccc---cCCcceeeecCC--CceEEEEECCCCCCccHHHHhhccCceE
Confidence 0 1122467899999998553 23334444331 123445556555 78999999999964 89999999999
Q ss_pred EEecCCCC
Q 011256 477 RVFGLPGN 484 (490)
Q Consensus 477 ~iw~~~~~ 484 (490)
+||++...
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99999765
No 62
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-36 Score=287.13 Aligned_cols=259 Identities=18% Similarity=0.340 Sum_probs=209.2
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEEEe
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd 257 (490)
+..+|.+.|++++|+|+|++|++|+.|++|+|||+.++. .+..+.+|.+.|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456799999999999999999999999999999998764 4678899999999999976 488999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC---
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--- 332 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 332 (490)
+.++ .......+.+|...|.+++|+|+ +.+|++|+.||.|++||+..+....... ...+|...+.+++|+|+
T Consensus 88 ~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENG-TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK--INNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSS-CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC--BTTSSSSCBCCCEECCCCCC
T ss_pred CCCC-cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee--eeccccCCcceEEEccccCC
Confidence 9764 23456677889999999999998 7899999999999999998764221111 13466788999999997
Q ss_pred --------------CcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCCeEEEEEcCCC----CEEEEEeCCC-EEEEE
Q 011256 333 --------------GLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVTAISFSENG----YYLATAAHDG-VKLWD 390 (490)
Q Consensus 333 --------------~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~s~~~----~~l~~~~~d~-i~iwd 390 (490)
+.+|++|+.|+.|++||++.+ +.+..+.+|...|.+++|+|++ .+|++++.|+ |++||
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 468999999999999999765 4677888999999999999986 8999999998 99999
Q ss_pred CCCCc----ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeee
Q 011256 391 LRKLK----NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 446 (490)
Q Consensus 391 ~~~~~----~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~ 446 (490)
++... ....+..+ ...|.+++|+|++.+|++++.| +++|+.... ..|.++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~-g~~~~~~~~ 303 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESVD-GQWVCISDV 303 (316)
T ss_dssp CSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECTT-SCEEEEEEC
T ss_pred ccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC-CcEEEeeec
Confidence 98632 12223333 6789999999999999999998 999997422 234444443
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.6e-36 Score=332.72 Aligned_cols=286 Identities=19% Similarity=0.328 Sum_probs=257.1
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|.+.|++++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||+.++
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~- 689 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG- 689 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccceeeeecccccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
.++..+.+|...|.+++|+| ++.++++|+.||.|++||+.++.....+. +|...|.+++|+|++.+|++|+
T Consensus 690 --~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 690 --KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-----GHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp --CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-----CCSSCEEEEEECSSTTEEEEEE
T ss_pred --ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-----CCCCCEEEEEEecCCCEEEEEE
Confidence 77888899999999999999 45689999999999999999999887765 4568999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecC-------------CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCC
Q 011256 341 SEALVKIWDVKSQANVAKFDG-------------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
.||.|++||+++++....+.. ....+.+++|+|+|.++++++.+.+.+||+.++.....+... +..
T Consensus 763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~-~~~ 841 (1249)
T 3sfz_A 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG-HHS 841 (1249)
T ss_dssp SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS-SSS
T ss_pred CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC-CCC
Confidence 999999999998877666532 233788999999999999999766999999998887777633 368
Q ss_pred CeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 408 PTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.+.+++|+|++.++++++.+ +++|++ ........+..| .+.|++++|+|+|.+|++++.||.|++|++..
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~----~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNI----DSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEET----TTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEc----CCCceeeecCCC--ccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 89999999999999999998 999998 456667777765 78999999999999999999999999999753
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-35 Score=282.06 Aligned_cols=246 Identities=17% Similarity=0.299 Sum_probs=205.1
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+...
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred CccceeeeecccccceEEEEEecCC----------CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATN----------KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
. .........|...|.+++|+|++ .+|++++.||.|++||. .......+. +|...|.+++|+|
T Consensus 151 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-----~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 151 C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-----AHESNVNHLSISP 223 (343)
T ss_dssp E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-----CCSSCEEEEEECT
T ss_pred c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-----CccccceEEEECC
Confidence 1 11111223788999999999987 79999999999999994 455554443 4568899999999
Q ss_pred CCcEEEEEcCCCcEEEEECCC-CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCccee--eeec------
Q 011256 332 DGLILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFR--SFES------ 402 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~--~~~~------ 402 (490)
+|.+|++|+.||.|++||+.. ......+. +...|.+++|+|++.+++++++++|++||+.+.+... .+..
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 999999999999999999954 34444443 4567999999999999988876679999998766544 3321
Q ss_pred ---CCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEee
Q 011256 403 ---SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 403 ---~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
..+...+.+++|+|+|++|++|+.| +++|++..
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 1345679999999999999999998 99999843
No 65
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-35 Score=287.21 Aligned_cols=242 Identities=24% Similarity=0.429 Sum_probs=213.1
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ .+
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~---~~ 199 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---QC 199 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC---ee
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999875 45
Q ss_pred eeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecC--CCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 267 KHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDA--GTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
...+. +...+.+++|+| ++.+|++|+.||.|++||++++..+..+... ...+|...|.+++|+|++.+|++|+.||
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 55554 567899999999 8999999999999999999999887766422 1246778999999999999999999999
Q ss_pred cEEEEECCCC------------ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCee
Q 011256 344 LVKIWDVKSQ------------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 344 ~i~iwd~~~~------------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
.|++||+++. .+...+.+|...|.+++|+|++.+|++|+.|+ |++||+++++.+..+..+ ...|.
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h--~~~v~ 356 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH--RNSVI 356 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC--CCCEE
Confidence 9999999753 34566788999999999999999999999998 999999999988888766 67899
Q ss_pred EEEEcC------CCCEEEEEecC--eEEEEEe
Q 011256 411 SVDFDH------SGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 411 ~i~~s~------~~~~l~~~~~d--i~v~~~~ 434 (490)
+++|++ ++.+|++|+.| ++||++.
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999986 68899999998 9999984
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-35 Score=304.05 Aligned_cols=291 Identities=16% Similarity=0.207 Sum_probs=239.0
Q ss_pred cccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCcc---CEEEEEEeeC-CCEEEEEeCCCcEEEE
Q 011256 182 LHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTE-GDLFLTGSADKTVRVW 256 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~-~~~l~s~s~dg~i~iw 256 (490)
....|...|.+++|+|+++ ++++++.||.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.|++|
T Consensus 155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3457889999999999998 899999999999999999999999999999 9999999999 9999999999999999
Q ss_pred eCCCCCccceeeee-c---ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC----------------
Q 011256 257 QGSEDGNYDCKHTL-K---DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG---------------- 316 (490)
Q Consensus 257 d~~~~~~~~~~~~~-~---~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------- 316 (490)
|+.++ +.+..+ . .|...|.++.|+ ++.+|++++.||.|++||+.+++.+..+....
T Consensus 235 d~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (615)
T 1pgu_A 235 DGKSG---EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310 (615)
T ss_dssp ETTTC---CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred ECCCC---CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCC
Confidence 99876 566677 5 899999999999 99999999999999999999887665544320
Q ss_pred ------------------------C---------------------------------CCCCCCceEEEEc---------
Q 011256 317 ------------------------T---------------------------------DGRPEGYTSAAFH--------- 330 (490)
Q Consensus 317 ------------------------~---------------------------------~~~~~~v~~~~~~--------- 330 (490)
. ..|...|.+++|.
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 390 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 390 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence 0 1122233333331
Q ss_pred -------------------------CC--------------------------------------CcEEEEEcC-CCcEE
Q 011256 331 -------------------------PD--------------------------------------GLILGTGTS-EALVK 346 (490)
Q Consensus 331 -------------------------~~--------------------------------------~~~l~~g~~-dg~i~ 346 (490)
|+ +.+|++++. ||.|+
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence 11 344555555 66677
Q ss_pred EEECCCCcee-eeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcC--------
Q 011256 347 IWDVKSQANV-AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-------- 416 (490)
Q Consensus 347 iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-------- 416 (490)
+||+.+++.. ..+..|...|++++|+|++.+|++++.|+ |++||+.+++.+..+... +...|.+++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-CCCceeEEEEcCcccccccc
Confidence 7776665544 56677889999999999999999999998 999999999887776541 378999999999
Q ss_pred --CCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 417 --SGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 417 --~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
++.+|++++.| +++|++.... ..+..+..| ...|++++|+|++. |++++.||.|++|++..
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h--~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAH--KDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSS--TTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCc---eechhhhcC--ccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999988 9999984321 455666665 78999999999999 99999999999999874
No 67
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-36 Score=282.85 Aligned_cols=242 Identities=21% Similarity=0.393 Sum_probs=197.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-------CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
.|...|.+++|+|++++|++|+.|+.|+|||+.. .+.+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 4889999999999999999999999999999842 456778899999999999999999999999999999999
Q ss_pred CCCC-CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC--eEEEEeecCCCCCCCCCceEEEEcCC--
Q 011256 258 GSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG--ICLTQVSDAGTDGRPEGYTSAAFHPD-- 332 (490)
Q Consensus 258 ~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~-- 332 (490)
+... ....++..+.+|...|.+++|+|++.+|++++.|++|++||..++ .++..+. +|...|.+++|+|+
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-----GHEGTVWSSDFDKTEG 210 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCSSS
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-----CCCCcEEEEEecCCCC
Confidence 9532 334667788899999999999999999999999999999998876 3444443 56689999999998
Q ss_pred CcEEEEEcCCCcEEEEECCCC--------ceeeeecC-CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc--eeee
Q 011256 333 GLILGTGTSEALVKIWDVKSQ--------ANVAKFDG-HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSF 400 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~ 400 (490)
+.+|++|+.|+.|++||++.+ .....+.. |...|.+++|++++ +|++++.|+ |++||...+.. ....
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 679999999999999998764 34445554 88999999999765 788899998 99999887642 2222
Q ss_pred ecCCCCC-CeeEEEEcC--CCCEEEEEecC--eEEEEE
Q 011256 401 ESSDSET-PTNSVDFDH--SGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 401 ~~~~~~~-~i~~i~~s~--~~~~l~~~~~d--i~v~~~ 433 (490)
...+.. .|.+++|+| ++.+|++|+.| ++||++
T Consensus 290 -~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 290 -ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp -SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred -ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 122344 899999999 68999999998 999987
No 68
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-36 Score=294.25 Aligned_cols=264 Identities=23% Similarity=0.355 Sum_probs=220.7
Q ss_pred EEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEE
Q 011256 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA 292 (490)
Q Consensus 213 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 292 (490)
.|+........++.+|.+.|++++|+|++++|++|+.||+|+|||..++ .....+..|...|.+++|+|++++|++|
T Consensus 50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 4555566778889999999999999999999999999999999999886 6778888999999999999999999999
Q ss_pred ECCCeEEEEeCCCCeEEEEe--ecCCCCCCCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeee-----cCCCC
Q 011256 293 SLDNTWCFYDLSSGICLTQV--SDAGTDGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKF-----DGHVG 364 (490)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~~~~ 364 (490)
+.|+.+++||+.+....... ......+|...+.++.|+|+ +..|++|+.|+.|++||+++++.+..+ .+|..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 99999999999754311100 01113467788999999996 467999999999999999999988777 57889
Q ss_pred CeEEEEEcC-CCCEEEEEeCCC-EEEEECCC-CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc
Q 011256 365 AVTAISFSE-NGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 439 (490)
Q Consensus 365 ~i~~l~~s~-~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 439 (490)
.|.+++|++ ++.+|++|+.|+ |++||++. ...+..+..+ ...|.+++|+|++.+|++++.| +++|++ ..
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~----~~ 280 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDM----RT 280 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEET----TT
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEEC----CC
Confidence 999999987 789999999998 99999984 4556666554 7889999999999999999999 999998 44
Q ss_pred ceEeeeecCCC-----CCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 440 WNCIKTFPDLS-----GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 440 ~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...+..+..+. +...|++++|+|+|++|++|+.||.|++||+..++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 45555544321 12358999999999999999999999999986543
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-35 Score=328.95 Aligned_cols=293 Identities=21% Similarity=0.362 Sum_probs=253.3
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEEEeCCCC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.++++|+.||.|++||+.++
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 46889999999999999999999999999999999999999999999999999999 4558999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC-------------------------
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG------------------------- 316 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------- 316 (490)
.+...+.+|...|++++|+|+++++++++.||.|++||+.++.....+....
T Consensus 734 ---~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 734 ---ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp ---SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred ---chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 6788888999999999999999999999999999999998887655543110
Q ss_pred -------------------------CCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 011256 317 -------------------------TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF 371 (490)
Q Consensus 317 -------------------------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 371 (490)
..+|...+.+++|+|++.++++|+.||.|++||+.++..+..+.+|...|++++|
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 890 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE
Confidence 0156678999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCC-EEEEECCCCcce-----------------------------eeeecC------CCCCCeeEEEEc
Q 011256 372 SENGYYLATAAHDG-VKLWDLRKLKNF-----------------------------RSFESS------DSETPTNSVDFD 415 (490)
Q Consensus 372 s~~~~~l~~~~~d~-i~iwd~~~~~~~-----------------------------~~~~~~------~~~~~i~~i~~s 415 (490)
+|+|.+|++++.|+ |++||+...... ..+... .....+.+++|+
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 970 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEc
Confidence 99999999999998 999997532110 000000 014578999999
Q ss_pred CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 416 HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|++.++++|+.+ +.+|++ ........+..| ...|++++|+|+|++|++++.||.|++|++.++.
T Consensus 971 p~g~~l~~g~~~g~i~i~d~----~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 971 PHLEYVAFGDEDGAIKIIEL----PNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp TTSSEEEEEETTSCCEEEET----TTTSCEEECCCC--SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred CCCCEEEEEcCCCCEEEEEc----CCCceeeecccC--CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 999999999998 999998 344455555554 7789999999999999999999999999998753
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-34 Score=285.67 Aligned_cols=275 Identities=23% Similarity=0.522 Sum_probs=240.0
Q ss_pred ccCCCCCe-EEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 183 HKTSKPGI-VSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 183 ~~~h~~~I-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
..+|.+.| .|+. +++++|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +++|++|+.||+|++||+.++
T Consensus 114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 45666654 5554 468999999999999999999999999999999999999996 679999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.....+.+|...|.++.|+ ++.+++|+.||.|++||+.+++.+..+. +|...+.++.+ ++.++++|+.
T Consensus 190 ---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 190 ---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-----GHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp ---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-----CCSSCEEEEEE--CSSCEEEEET
T ss_pred ---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-----CCcccEEEEEE--CCCEEEEEcC
Confidence 7788889999999999996 6789999999999999999999888775 34578999998 7889999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
||.|++||+++++.+..+.+|...|.++.| ++.++++++.|+ |++||+++++.+..+..+ ...+.++.+ ++.+
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMEL--KDNI 331 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEE--eCCE
Confidence 999999999999999999999999999999 788999999998 999999999988887765 567777776 4679
Q ss_pred EEEEecC--eEEEEEeecCCcceEeeeecCC-CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 421 LAVASAD--IRVYQVASVKADWNCIKTFPDL-SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+++++.| +++|++ .....+..+..+ .+...|++++|+ +++|++|+.||.|++|++..++
T Consensus 332 l~~~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 332 LVSGNADSTVKIWDI----KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEEEETTSCEEEEET----TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEeCCCeEEEEEC----CCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 9999988 999998 445566666553 247889999995 6799999999999999998764
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=282.14 Aligned_cols=287 Identities=17% Similarity=0.197 Sum_probs=235.0
Q ss_pred ccccCCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCC-CcEE-EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEE
Q 011256 181 PLHKTSKPGIVSLDIHYS---KDVIATGGVDTNAVLFDRPS-GQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 181 ~~~~~h~~~I~~~~~~~~---~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 255 (490)
.....|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++|+.||.|++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 456789999999999999 59999999999999999987 5554 788899999999999999999999999999999
Q ss_pred EeCCCCCccceeeeecccccceEEEEE--ecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTV--HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
||+.+. ... .+..|...|.+++| +|++.+|++++.||.|++||+++++.+..+... ..+.++.+. +
T Consensus 113 wd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~--~ 180 (368)
T 3mmy_A 113 WDLSSN---QAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP------ERCYCADVI--Y 180 (368)
T ss_dssp EETTTT---EEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS------SCEEEEEEE--T
T ss_pred EEcCCC---Cce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC------CCceEEEec--C
Confidence 999885 333 35679999999999 889999999999999999999999888777643 345666655 4
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeee--cCCCCCeEEEEEcCCCCE----EEEEeCCC-EEEEECCCC---cceeeeecC
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKF--DGHVGAVTAISFSENGYY----LATAAHDG-VKLWDLRKL---KNFRSFESS 403 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~----l~~~~~d~-i~iwd~~~~---~~~~~~~~~ 403 (490)
..+++++.++.+.+||++........ ..+...+.++.+.+++.. +++++.++ |++||++.. .....+..+
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 47888889999999999876443332 224456677777665544 99999998 999999987 445555544
Q ss_pred CC----------CCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 404 DS----------ETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 404 ~~----------~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.. ...|.+++|+|++++|++++.| +++|++ .....+..+..| ...|.+++|+|+|++|++|+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK----DARTKLKTSEQL--DQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET----TTTEEEEECCCC--SSCEEEEEECTTSSCEEEEE
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC----CCCcEEEEecCC--CCCceEEEECCCCCeEEEEe
Confidence 21 1169999999999999999988 999998 556777777765 78999999999999999999
Q ss_pred CCCcEEEecCCCCC
Q 011256 472 MDRNLRVFGLPGND 485 (490)
Q Consensus 472 ~dg~v~iw~~~~~~ 485 (490)
.|+..+.|++...+
T Consensus 335 ~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 335 SYDWSKGHEFYNPQ 348 (368)
T ss_dssp CCCSTTCGGGCCTT
T ss_pred cccccccccccCCC
Confidence 99977777765443
No 72
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6e-36 Score=292.34 Aligned_cols=288 Identities=20% Similarity=0.282 Sum_probs=234.4
Q ss_pred CeEEEEecCCCCE-EEEEeCCCcEEEEeCCCC----cEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCC
Q 011256 189 GIVSLDIHYSKDV-IATGGVDTNAVLFDRPSG----QIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 189 ~I~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
....++++|+... +++++.||.|+||++... ..+..+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3446888887654 445788999999998654 23456789999999999999 89999999999999999998753
Q ss_pred cc----ceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 263 NY----DCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 263 ~~----~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.. .....+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+. ...|...|.+++|+|++.+|+
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEE
Confidence 21 3567788999999999999998 699999999999999999999887773 124568999999999999999
Q ss_pred EEcCCCcEEEEECCCCceeeee-cCCCCC-eEEEEEcCCCCEEEEE---eCCC-EEEEECCCCcceeeeecCCCCCCeeE
Q 011256 338 TGTSEALVKIWDVKSQANVAKF-DGHVGA-VTAISFSENGYYLATA---AHDG-VKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~l~~s~~~~~l~~~---~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
+++.||.|++||+++++.+..+ ..|.+. +.++.|+|++.+|++| +.++ |++||+++...........+...+.+
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence 9999999999999999999888 678765 8999999999999999 5677 99999998765333333334677999
Q ss_pred EEEcCCCCEEEEEe-cC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 412 VDFDHSGSYLAVAS-AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 412 i~~s~~~~~l~~~~-~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
++|+|++.+|++++ .| +++|++.........+.. +.+...|.+++|+|++.++++ .++.+++|++..+
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---ECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 99999999997654 45 999999543321223333 334678999999999998875 5679999998764
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.8e-34 Score=284.45 Aligned_cols=278 Identities=21% Similarity=0.436 Sum_probs=244.8
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|.+.|.+++|+ ++++++|+.||.|++||+.+++.+..+.+|...|.++.|+ ++.|++|+.||+|++||+.++
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~- 229 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG- 229 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-
Confidence 45789999999998 6799999999999999999999999999999999999994 678999999999999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.....+.+|...|.++.| ++.++++|+.||.|++||++++..+..+. +|...+.++.| ++.++++|+.|
T Consensus 230 --~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~~~~d 298 (445)
T 2ovr_B 230 --QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-----GHTNRVYSLQF--DGIHVVSGSLD 298 (445)
T ss_dssp --CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-----CCSSCEEEEEE--CSSEEEEEETT
T ss_pred --cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-----CCCCceEEEEE--CCCEEEEEeCC
Confidence 677888899999999999 68999999999999999999999888775 45578999999 78899999999
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC-CCCCeeEEEEcCCCCE
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-SETPTNSVDFDHSGSY 420 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-~~~~i~~i~~s~~~~~ 420 (490)
|.|++||+++++.+..+.+|...+.++.+ ++.+|++++.|+ |++||+++++.+..+..+. +...|.++.|+ +.+
T Consensus 299 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 374 (445)
T 2ovr_B 299 TSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF 374 (445)
T ss_dssp SCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred CeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence 99999999999999999999999999888 467999999998 9999999999888887532 46789999995 689
Q ss_pred EEEEecC--eEEEEEeecCCcceEeeee---cCCCCCcceEEEEEcCCCCeEEEEeCCCc----EEEecCCCC
Q 011256 421 LAVASAD--IRVYQVASVKADWNCIKTF---PDLSGTGKATCVKFGPDAKYIAVGSMDRN----LRVFGLPGN 484 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~----v~iw~~~~~ 484 (490)
|++|+.| +++|++ .....+..+ ....+.+.|.+++|+|++.+|++|+.||. |.|||+..+
T Consensus 375 l~s~~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 375 VITSSDDGTVKLWDL----KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETTSEEEEEET----TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEeCCCeEEEEEC----CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999988 999998 344444444 22234778999999999999999999998 999999865
No 74
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-35 Score=310.90 Aligned_cols=208 Identities=12% Similarity=0.153 Sum_probs=181.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
+.+|...|++++|+|++++||+|+.||.|+||+....+....+. |...|.+++|+| |++|++++.|++|++||+.++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~- 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ- 89 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC-
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC-
Confidence 44788999999999999999999999999999998877766654 788999999999 889999999999999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec-------CCCCCCCCCceEEEEcCC-Cc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD-------AGTDGRPEGYTSAAFHPD-GL 334 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~-~~ 334 (490)
+++..+. |...|++++|+|+++++++|+.||.|++||+.++... .+.. ....+|...|.+++|+|+ +.
T Consensus 90 --~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 90 --KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp --SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred --cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCC
Confidence 5566664 6789999999999999999999999999999998764 2111 224567889999999996 57
Q ss_pred EEEEEcCCCcEEEEECCCCceeeeecCC------------------CCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc
Q 011256 335 ILGTGTSEALVKIWDVKSQANVAKFDGH------------------VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 395 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~ 395 (490)
.|++|+.||.| +||+++++.+..+..| ...|++++|+|+|.+|++++.|+ |++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 89999999999 9999999988887655 46799999999999999999998 9999998876
Q ss_pred cee
Q 011256 396 NFR 398 (490)
Q Consensus 396 ~~~ 398 (490)
.+.
T Consensus 245 ~~~ 247 (902)
T 2oaj_A 245 MIM 247 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.5e-36 Score=283.99 Aligned_cols=249 Identities=18% Similarity=0.232 Sum_probs=199.0
Q ss_pred EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec--CCCEEEEEECCCeEEEE
Q 011256 224 TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA--TNKYFVTASLDNTWCFY 301 (490)
Q Consensus 224 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~i~iw 301 (490)
.+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++. ...+..+.+|.+.|.+++|+| ++++|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 456899999999999999999999999999999997642 235677889999999999975 48999999999999999
Q ss_pred eCCCCe--EEEEeecCCCCCCCCCceEEEEcCC--CcEEEEEcCCCcEEEEECCCCce---eeeecCCCCCeEEEEEcCC
Q 011256 302 DLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSEN 374 (490)
Q Consensus 302 d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~ 374 (490)
|++++. ....+ .+|...|.+++|+|+ +.+|++|+.||.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 87 REENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp CCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred ECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence 999874 33333 256688999999997 78999999999999999987632 3456778899999999997
Q ss_pred -----------------CCEEEEEeCCC-EEEEECCCCc---ceeeeecCCCCCCeeEEEEcCCC----CEEEEEecC--
Q 011256 375 -----------------GYYLATAAHDG-VKLWDLRKLK---NFRSFESSDSETPTNSVDFDHSG----SYLAVASAD-- 427 (490)
Q Consensus 375 -----------------~~~l~~~~~d~-i~iwd~~~~~---~~~~~~~~~~~~~i~~i~~s~~~----~~l~~~~~d-- 427 (490)
+.+|++|+.|+ |++||++... ....+.. |...|.+++|+|++ .+|++++.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 47899999998 9999997552 3444444 47889999999987 889999999
Q ss_pred eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 428 IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 428 i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
++||++............+.. +...|.+++|+|++++|++++.||.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998542111111112222 36789999999999999999999999999975
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-34 Score=284.40 Aligned_cols=280 Identities=21% Similarity=0.336 Sum_probs=238.0
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEEEeCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~ 260 (490)
..+|.+.|.+++|++++ ++++|+.||.|++||+.+++.+..+.+|...|.+++|++ ++.+|++|+.||+|++||+..
T Consensus 158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 34789999999999987 999999999999999999999999999999999999985 778999999999999999987
Q ss_pred CCccc--------------------eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 011256 261 DGNYD--------------------CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320 (490)
Q Consensus 261 ~~~~~--------------------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 320 (490)
..... ....+.+|...|.++ +++++++++++.||.|++||+.++..+..+. +|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~ 309 (464)
T 3v7d_B 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-----GH 309 (464)
T ss_dssp CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-----CC
T ss_pred CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----CC
Confidence 53211 255677899999887 5679999999999999999999999888775 45
Q ss_pred CCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceee
Q 011256 321 PEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRS 399 (490)
Q Consensus 321 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~ 399 (490)
...|.+++|+|++.++++|+.||.|++||+++++.+..+.+|...|.++.|+ +.+|++++.|+ |++||+++......
T Consensus 310 ~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 310 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 5889999999999999999999999999999999999999999999999997 57999999998 99999998876655
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
... ...+..++|++++.++++++.+ +++|++ .....+..+.. .+...|.+++|+ +..++++++.||.+.+
T Consensus 388 ~~~---~~~~~~~~~~~~~~~l~~~~dg~i~iwd~----~~g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 388 YHH---TNLSAITTFYVSDNILVSGSENQFNIYNL----RSGKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp EEC---TTCCCEEEEEECSSEEEEEETTEEEEEET----TTCCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred ecC---CCCccEEEEEeCCCEEEEecCCeEEEEEC----CCCcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 543 5678889999999999999966 999998 45555554222 247899999997 4455666677776665
Q ss_pred ecC
Q 011256 479 FGL 481 (490)
Q Consensus 479 w~~ 481 (490)
|-+
T Consensus 459 ~~l 461 (464)
T 3v7d_B 459 EIL 461 (464)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-34 Score=306.85 Aligned_cols=292 Identities=18% Similarity=0.285 Sum_probs=247.5
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
...|..+|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+.++.
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 130 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred ccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC--CCcEEEEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTG 339 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g 339 (490)
.....+.+|...|.+++|+| ++..|++++.||.|++||+.++.....+... +...+.+++|+| ++.+|++|
T Consensus 131 --~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 131 --ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG----QERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp --EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC----CTTCCCEEEECCSTTCCEEEEE
T ss_pred --eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC----CCCCEEEEEEEECCCCCEEEEE
Confidence 56677788999999999999 8899999999999999999988776666532 337799999999 99999999
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+ |++||+.+++....+..+ ...+.+++|+|++
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--LERSWCIATHPTG 282 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--SSSEEEEEECTTC
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--CCcEEEEEEccCC
Confidence 9999999999999999999999999999999999999999999998 999999999888887765 6789999999998
Q ss_pred C--EEEEEecC-eEEEEEeecCC------cceEeeee-------------------------------cCCCCCcceEEE
Q 011256 419 S--YLAVASAD-IRVYQVASVKA------DWNCIKTF-------------------------------PDLSGTGKATCV 458 (490)
Q Consensus 419 ~--~l~~~~~d-i~v~~~~~~~~------~~~~~~~~-------------------------------~~~~~~~~v~~~ 458 (490)
. ++++++.+ +.+|++..... ....+... ....+...+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 7 57777776 88887632111 01111000 001123457788
Q ss_pred EEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 459 KFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 459 ~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+|+|+|++|++++ ||.+.+|++..
T Consensus 363 ~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 363 AHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCCCCEEEEec-CCEEEEEECcc
Confidence 9999999888887 88899998754
No 78
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-35 Score=282.24 Aligned_cols=250 Identities=21% Similarity=0.336 Sum_probs=215.4
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEeccCccCEEEEEEeeC--CCEEEEEeCCCcEEEEe
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd 257 (490)
...+|...|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|.+++|+++ +.+|++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 456799999999999999999999999999999997 56778889999999999999977 89999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC----
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---- 331 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 331 (490)
+.++ .......+..|...|.+++|+|+ +.+|++++.||.|++||+..+....... ...|...|.+++|+|
T Consensus 86 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 86 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECCCC--
T ss_pred cCCC-ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcCcccc
Confidence 9874 22367777889999999999999 9999999999999999999874433322 124568899999999
Q ss_pred ---------CCcEEEEEcCCCcEEEEECCCCc----eeeeecCCCCCeEEEEEcCC---CCEEEEEeCCC-EEEEECCCC
Q 011256 332 ---------DGLILGTGTSEALVKIWDVKSQA----NVAKFDGHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 332 ---------~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~d~-i~iwd~~~~ 394 (490)
++.+|++|+.||.|++||++++. ....+.+|...|.+++|+|+ +.+|++++.|+ |++||++..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998764 44667889999999999999 89999999998 999999986
Q ss_pred cc---eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEee
Q 011256 395 KN---FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 395 ~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
.. ...+....+...+.+++|+|++++|++++.+ +++|++..
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 52 2223333347789999999999999999888 99999863
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-34 Score=297.66 Aligned_cols=288 Identities=18% Similarity=0.214 Sum_probs=249.3
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----cEEEEeccCccC-EEEEEEee--CCCEEEEEeCCCcEE
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----QIVTTLSGHSKK-VTSVKFVT--EGDLFLTGSADKTVR 254 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~-v~~l~~~~--~~~~l~s~s~dg~i~ 254 (490)
....|.+.|++++|+|++++|++++ ++.|++||+.++ +....+.+|... |.+++|+| ++++|++|+.||.|+
T Consensus 13 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 13 QPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred CCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence 3456889999999999999999998 889999999998 889999999999 99999999 999999999999999
Q ss_pred EEeCCCCC-----ccceeeeecccccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 255 VWQGSEDG-----NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 255 iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
+||+.++. .......+..|...|.+++|+|++++|++++.+ +.|.+|| .+..+..+. +|...|.
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-----~~~~~v~ 164 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-----GHSQRIN 164 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC-----SCSSCEE
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee-----cCCccEE
Confidence 99996421 225667778899999999999999999999988 6888888 455555443 5668999
Q ss_pred EEEEcCCCc-EEEEEcCCCcEEEEECCCCceeeeecCCCC---CeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceee
Q 011256 326 SAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKFDGHVG---AVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRS 399 (490)
Q Consensus 326 ~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~ 399 (490)
+++|+|++. ++++++.||.|++||+.+++.+..+.+|.. .|++++|+|+ +.+|++++.++ |++||+++++.+..
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 999999997 899999999999999999999999999998 9999999999 99999999998 99999999988887
Q ss_pred eecC--CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCC--CCCcceEEEEEcCCCCeEEEEeCC
Q 011256 400 FESS--DSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPDAKYIAVGSMD 473 (490)
Q Consensus 400 ~~~~--~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d 473 (490)
+... .+...|.+++|+ ++.+|++++.+ +++|++ .....+..+..+ .....+.++.|+ ++.++++++.|
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 318 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV----TTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD 318 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET----TTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT
T ss_pred ecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEEC----CCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECC
Confidence 7321 337899999999 99999999988 999998 445555555543 124678888886 89999999999
Q ss_pred CcEEEecCCC
Q 011256 474 RNLRVFGLPG 483 (490)
Q Consensus 474 g~v~iw~~~~ 483 (490)
|.|++|++..
T Consensus 319 g~i~~~d~~~ 328 (615)
T 1pgu_A 319 GTLNFYELGH 328 (615)
T ss_dssp SCEEEEETTE
T ss_pred CCEEEEECCC
Confidence 9999999875
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-35 Score=310.71 Aligned_cols=292 Identities=16% Similarity=0.166 Sum_probs=218.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-----------EEeccCccCEEEEEEeeC-CCEEEEEeCCCcE
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-----------TTLSGHSKKVTSVKFVTE-GDLFLTGSADKTV 253 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i 253 (490)
|...|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|.+.|.+++|+|+ +..|++|+.||.|
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v 176 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL 176 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence 5678999999999999999999999999999887754 234679999999999996 5689999999999
Q ss_pred EEEeCCCCCccceeeeeccc------------------ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecC
Q 011256 254 RVWQGSEDGNYDCKHTLKDH------------------TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDA 315 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 315 (490)
+||+.+. .+...+..| ...|++++|+|+|.+|++++.||.|++||+++++.+......
T Consensus 177 -lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 177 -TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp -EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred -EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 9999886 555555544 578999999999999999999999999999998876532110
Q ss_pred CCC-------------CCCCCceEEEEc----CCC-cEEEEEcC------------------------------------
Q 011256 316 GTD-------------GRPEGYTSAAFH----PDG-LILGTGTS------------------------------------ 341 (490)
Q Consensus 316 ~~~-------------~~~~~v~~~~~~----~~~-~~l~~g~~------------------------------------ 341 (490)
... .+...|.+++|+ |++ .+|++|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 000 123467778874 332 34555433
Q ss_pred ----------------------------------------CCcEEEEECCCCceeee-------ecCCCCCeE-------
Q 011256 342 ----------------------------------------EALVKIWDVKSQANVAK-------FDGHVGAVT------- 367 (490)
Q Consensus 342 ----------------------------------------dg~i~iwd~~~~~~~~~-------~~~~~~~i~------- 367 (490)
||.|++||+.++..... +..|...|+
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 34455555544422211 112223344
Q ss_pred ---------------------------EEEEcCCCCEEEEEeCCC-EEEEECCCCcce--eeeec-------CCCCCCee
Q 011256 368 ---------------------------AISFSENGYYLATAAHDG-VKLWDLRKLKNF--RSFES-------SDSETPTN 410 (490)
Q Consensus 368 ---------------------------~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~--~~~~~-------~~~~~~i~ 410 (490)
+++|+|++.+|++|+.|+ |++||+..+... ..+.. ..+...|.
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~ 492 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD 492 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence 445578899999999998 999999877432 11110 13467899
Q ss_pred EEEEcCCCCEEEEEecC--eEEEEEeecCCc-----------------------------------------ceEeeeec
Q 011256 411 SVDFDHSGSYLAVASAD--IRVYQVASVKAD-----------------------------------------WNCIKTFP 447 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~-----------------------------------------~~~~~~~~ 447 (490)
+++|+|+|++|++|+.| ++||++...... +.++..+.
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 572 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH 572 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence 99999999999999998 999999754210 13455566
Q ss_pred CCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 448 DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 448 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
.| .+.|++++|+||| +||+|+.||+|+|||+.+.
T Consensus 573 ~h--~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 573 AN--KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp CC--SCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cC--CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 64 7899999999999 9999999999999998764
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=281.59 Aligned_cols=271 Identities=16% Similarity=0.246 Sum_probs=216.7
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC------cccee
Q 011256 194 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG------NYDCK 267 (490)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~ 267 (490)
.+.+++.++++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+..... ....+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888776 567888899888 9999999999999876320 11223
Q ss_pred eeec-ccccceEEEEEec--CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 268 HTLK-DHTAEVQAVTVHA--TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 268 ~~~~-~h~~~v~~l~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
..+. +|...|.+++|+| +++++++++.||.|++||++++........ .+...+.+++|+|++.+|++|+.||.
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA----KSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC----CSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec----CCCCceEEEEECCCCCEEEEEcCCCE
Confidence 3332 6778999999999 999999999999999999999988655532 23357999999999999999999999
Q ss_pred EEEEECCCCcee-eeecC-CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCC-CCCCe--eEEEEcCCCC
Q 011256 345 VKIWDVKSQANV-AKFDG-HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD-SETPT--NSVDFDHSGS 419 (490)
Q Consensus 345 i~iwd~~~~~~~-~~~~~-~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~-~~~~i--~~i~~s~~~~ 419 (490)
|++||+++++.+ ..+.. |.++|++++|+|+|.+|++++++.|++||+++.+....+.... +...+ .+++|+|+|+
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999999999887 77887 9999999999999999999996669999999988765554311 12233 4699999999
Q ss_pred EEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC---CCCeEEEEeCCCcEEEecCCC
Q 011256 420 YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP---DAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 420 ~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+|++++. + ++||++......|.. ..+..++|++ ++..|++++.||.+.++-..+
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKNWTK----------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCSEEE----------EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEEecCCCCcEEEEEEcccccceEe----------cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 9999876 5 999999665555543 3567788888 888899999999998875443
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.5e-34 Score=300.65 Aligned_cols=245 Identities=23% Similarity=0.391 Sum_probs=214.3
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|...|.+++|+|++++|++|+.||.|+|||+.++..+..+.+|...|.+++|+|++++|++|+.|++|++||.....
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~ 505 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccceeeeecccccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
.........+|...|.+++|+|++ ..+++++.|++|++||+.++.....+. +|...|.+++|+|++.+|++|+
T Consensus 506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCCCCEEEEEe
Confidence 212222235789999999999987 689999999999999999998877664 4668899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCC----------------
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD---------------- 404 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~---------------- 404 (490)
.||.|++||+++++.+..+.. ...|.+++|+|++.+|+++++++|++||+++...+..+....
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 999999999999998888764 468999999999999999988889999999988776654321
Q ss_pred -CCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 405 -SETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 405 -~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+...+.+++|+|+|++|++|+.| |+||++
T Consensus 660 ~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 660 RKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp -CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 01236889999999999999999 999987
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=276.57 Aligned_cols=259 Identities=16% Similarity=0.205 Sum_probs=212.0
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCe
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNT 297 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~ 297 (490)
+++..+.+|...|++++|+|++++|++|+.||.|+||++... .......+.+|...|++++|+++ +.+|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 456678899999999999999999999999999999999742 23667788899999999999877 899999999999
Q ss_pred EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC--CcEEEEEcCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcC
Q 011256 298 WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSE 373 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~ 373 (490)
|++||+.++....... ...|...|.+++|+|+ +.+|++++.||.|++||++++. ....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred EEEEEcCCCceeEeee---ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence 9999999987332222 1245688999999999 9999999999999999998873 4445678999999999999
Q ss_pred -------------CCCEEEEEeCCC-EEEEECCCCcceee--eecCCCCCCeeEEEEcCC---CCEEEEEecC--eEEEE
Q 011256 374 -------------NGYYLATAAHDG-VKLWDLRKLKNFRS--FESSDSETPTNSVDFDHS---GSYLAVASAD--IRVYQ 432 (490)
Q Consensus 374 -------------~~~~l~~~~~d~-i~iwd~~~~~~~~~--~~~~~~~~~i~~i~~s~~---~~~l~~~~~d--i~v~~ 432 (490)
++.+|++++.|+ |++||++....... .....+...|.+++|+|+ +.+|++++.| +++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 699999999998 99999987654321 122334788999999999 8999999988 99999
Q ss_pred EeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 433 VASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+....... ....+....+...|++++|+|++++|++++.||.|++|++..
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 238 QDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ESSTTSCC-EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCCccc-eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 95533221 222233333577899999999999999999999999999873
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=289.49 Aligned_cols=276 Identities=17% Similarity=0.286 Sum_probs=223.2
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCcEEEEe-ccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCC---CCccceeee
Q 011256 195 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTL-SGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSE---DGNYDCKHT 269 (490)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~ 269 (490)
|+|++..+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.. +........
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 677777777654 488 467888888 89999999999999 999999999999999999865 322223333
Q ss_pred ecccccceEEEEEecCCCEEEEEECCCeEEEEeCC---CCeEEEEe--------ecCCCCCCCCCceEEE--EcCCCcEE
Q 011256 270 LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGICLTQV--------SDAGTDGRPEGYTSAA--FHPDGLIL 336 (490)
Q Consensus 270 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~--------~~~~~~~~~~~v~~~~--~~~~~~~l 336 (490)
+ .|...|.+++|+|++++|++++.||.|++||+. .+...... ... ..++...+.++. +++++.+|
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK-NFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGG-GGSSCCCEEEEEEEECSSCEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEcc-CcccccCceEEEEEEcCCCCEE
Confidence 3 589999999999999999999999999999995 44333322 111 001346677777 66899999
Q ss_pred EEEcCCCcEEEEECCCCceeeeecC--CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEE
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFDG--HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVD 413 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 413 (490)
++|+.||.|++||+++++.+..+.. |.+.|++++|+|++.+|++|+.|+ |++||+++++.+..+.... ...|.+++
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~ 264 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVE 264 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEE
Confidence 9999999999999999999999988 889999999999999999999999 9999999988888776322 56899996
Q ss_pred Ec----CCCCEEEEEecC--eEEEEEeecCCcceEeeeecCC------------------------CCCcceEEEEEcCC
Q 011256 414 FD----HSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDL------------------------SGTGKATCVKFGPD 463 (490)
Q Consensus 414 ~s----~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~ 463 (490)
|+ +++.+|++++.| +++|++ .....+..+..+ .+...|++++|+ +
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNF----VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEET----TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred eccccCCCccEEEEEcCCCcEEEEEc----CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 65 467899999998 999998 334444444332 156779999999 8
Q ss_pred CCeEEEEeCCCcEEEecCCCCC
Q 011256 464 AKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 464 ~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+++|++|+.||.|++||+..++
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGG
T ss_pred ceEEEecCCCCeEEEEECCCcc
Confidence 8999999999999999998764
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=281.87 Aligned_cols=288 Identities=14% Similarity=0.118 Sum_probs=230.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---EEEEecc-------------------------------------
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ---IVTTLSG------------------------------------- 227 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~------------------------------------- 227 (490)
.+|.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 378999999999976665 57899999999988 6655543
Q ss_pred -----------------CccCEEEEEEeeCCCEE-EEEeCCCcEEEEeCC--CCCccceeeeec--ccccceEEEEEecC
Q 011256 228 -----------------HSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGS--EDGNYDCKHTLK--DHTAEVQAVTVHAT 285 (490)
Q Consensus 228 -----------------h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~~~~--~h~~~v~~l~~~~~ 285 (490)
|.+.|.+++|+|++++| ++|+.||.|++||+. ++ .+...+. .|...|.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK---NVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---SCEEEEEEEECSSCEEEEEECTT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---ceeeeeecccCCCCceEEEEcCC
Confidence 33379999999999986 899999999999998 54 4555554 56789999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC---CcEEEEEcCCCcEEEEECCCCceeee-ecC
Q 011256 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQANVAK-FDG 361 (490)
Q Consensus 286 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~ 361 (490)
+++|++|+.+|.+++|++.++....... ....+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+.. +.+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 9999999999999999998876543000 012356688999999999 99999999999999999999988877 568
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC-----------------------CCCCCeeEEEEcCC
Q 011256 362 HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------------------DSETPTNSVDFDHS 417 (490)
Q Consensus 362 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~i~~s~~ 417 (490)
|...|++++|+ ++.+|++++.|+ |++||+++++.+..+... .....+.++.|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 999999999998 999999999887776532 12457899999999
Q ss_pred CCEEEEEe-cC--eEEEEE-eecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC------CCcEEEecCCCC
Q 011256 418 GSYLAVAS-AD--IRVYQV-ASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM------DRNLRVFGLPGN 484 (490)
Q Consensus 418 ~~~l~~~~-~d--i~v~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~ 484 (490)
+++|++++ .+ ++||++ +........+..+..+ +.|.+++|+|++.++++++. +..|.+|.+...
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 99999998 55 999998 2222334555666553 68999999996544444332 556899987543
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.4e-34 Score=275.54 Aligned_cols=244 Identities=16% Similarity=0.293 Sum_probs=212.8
Q ss_pred CCCCCeEEEEecCC----CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCC
Q 011256 185 TSKPGIVSLDIHYS----KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 185 ~h~~~I~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~ 259 (490)
.|...|++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 36789999999998 67999999999999999999999999999999999999999 89999999999999999998
Q ss_pred CCCccceeeee---cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec----------------------
Q 011256 260 EDGNYDCKHTL---KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD---------------------- 314 (490)
Q Consensus 260 ~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------- 314 (490)
++ .....+ ..|...|.+++|+|++.+|++++.||.|++||++++.....+..
T Consensus 147 ~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TD---TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TT---EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cC---eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 86 555555 68999999999999999999999999999999987754432211
Q ss_pred -CCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce--------------eeeecCCCCCeEEEEEcCC--CCE
Q 011256 315 -AGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--------------VAKFDGHVGAVTAISFSEN--GYY 377 (490)
Q Consensus 315 -~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~l~~s~~--~~~ 377 (490)
.....|...|.+++|+ +.+|++++.||.|++||++++.. +..+..|...|++++|+|+ +.+
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence 0012366889999998 77999999999999999987644 7777889999999999999 999
Q ss_pred EEEEeCCC-EEEEECCCCccee----eeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 378 LATAAHDG-VKLWDLRKLKNFR----SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~~~~~~----~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
|++++.++ |++||+++++... .+..+.+...|.+++|+|++++|++++.| +++|++
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 99999998 9999999876543 55555446899999999999999999998 999986
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-33 Score=270.89 Aligned_cols=242 Identities=17% Similarity=0.256 Sum_probs=214.3
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+....
T Consensus 131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~- 207 (401)
T 4aez_A 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN- 207 (401)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc-
Confidence 347889999999999999999999999999999999999999999999999999 56799999999999999998543
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEc--
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGT-- 340 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~-- 340 (490)
.....+.+|...|.+++|+|++.+|++|+.||.|++||+.++..+..+. .|...|.+++|+|++ .++++|+
T Consensus 208 -~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 208 -HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-----NHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-----CCSSCCCEEEECTTSTTEEEEECCT
T ss_pred -ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-----CCcceEEEEEECCCCCCEEEEecCC
Confidence 5677788999999999999999999999999999999999988877765 345789999999976 5666655
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
.||.|++||+++++.+..+. +...|.+++|+|++.++++++ .++ |++||+.++..........+...|.+++|+|+
T Consensus 282 ~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~d 360 (401)
T 4aez_A 282 MDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360 (401)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTT
T ss_pred CCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCC
Confidence 79999999999999988886 567899999999999999954 677 99999998766665554455789999999999
Q ss_pred CCEEEEEecC--eEEEEEee
Q 011256 418 GSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 418 ~~~l~~~~~d--i~v~~~~~ 435 (490)
+.+|++++.| +++|++..
T Consensus 361 g~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC
T ss_pred CCEEEEEeCCCcEEEEECCC
Confidence 9999999988 99999843
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.8e-33 Score=269.09 Aligned_cols=246 Identities=15% Similarity=0.157 Sum_probs=211.2
Q ss_pred eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC
Q 011256 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 304 (490)
Q Consensus 225 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 304 (490)
+..|..+|.+++|+|++++|++|+.||.|++||+.++ .......+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 3458899999999999999999999999999999874 123778888999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce---eee-ecCCCCCeEEEEEcCCCCEEEE
Q 011256 305 SGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN---VAK-FDGHVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~~~-~~~~~~~i~~l~~s~~~~~l~~ 380 (490)
++....... ...|...+.+++|+|++.+|++|+.||.|++||++.+.. ... ..+|...|.+++|+|++.+|++
T Consensus 83 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 83 GRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCeeeeeEE---eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 988665554 234568899999999999999999999999999988763 233 3568899999999999999999
Q ss_pred EeCCC-EEEEECC------------------CCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc
Q 011256 381 AAHDG-VKLWDLR------------------KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 439 (490)
Q Consensus 381 ~~~d~-i~iwd~~------------------~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 439 (490)
++.++ |++||++ .++.+..+..+ ...+.+++|+|++.+|++++.| +++|++ ..
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~ 233 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAWVSHDSTVCLADA----DK 233 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEEEETTTEEEEEEG----GG
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEEEeCCCEEEEEEC----CC
Confidence 99998 9999964 44555555543 6789999999999999999988 999998 44
Q ss_pred ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
...+..+..+ ...|.+++|+|++.+|++| .||.|++|++..
T Consensus 234 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 5566666665 6789999999999988887 899999999977
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=289.84 Aligned_cols=269 Identities=10% Similarity=0.045 Sum_probs=199.6
Q ss_pred CCCCeEEEEecCCC---------CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 186 SKPGIVSLDIHYSK---------DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 186 h~~~I~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|++..|++++.|++|+||
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence 46789999999987 789998866420 0136899999999999999999
Q ss_pred eCCCCCcc-ceeeeecccccceEEEEEecC------CCEEEEEECCCeEEEEeCCCCeEEE----Eee--cCCCCCCCCC
Q 011256 257 QGSEDGNY-DCKHTLKDHTAEVQAVTVHAT------NKYFVTASLDNTWCFYDLSSGICLT----QVS--DAGTDGRPEG 323 (490)
Q Consensus 257 d~~~~~~~-~~~~~~~~h~~~v~~l~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~----~~~--~~~~~~~~~~ 323 (490)
++.++... .....+.+|.+.|.+++|+|+ +.+|++++.||+|++||+..+.... ... .....+|...
T Consensus 189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 98765311 112345678899999999996 5799999999999999998764210 000 0012356689
Q ss_pred ceEEEEcCCCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEE--EEcCCC-CEEEEEeCCC-EEEEECCCCccee
Q 011256 324 YTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAI--SFSENG-YYLATAAHDG-VKLWDLRKLKNFR 398 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l--~~s~~~-~~l~~~~~d~-i~iwd~~~~~~~~ 398 (490)
|++++|++++ .|++|+.||+|++||++++ .+...+.+|...|+++ .|+|+| .+|++++.|+ |+|||+++++...
T Consensus 269 v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~ 347 (524)
T 2j04_B 269 ITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347 (524)
T ss_dssp EEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred EEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence 9999999864 7999999999999999976 4455688899999999 578887 8999999998 9999999988777
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
.+..+.....+.+++|+|+++.+++++.+ +++|++. ...++..+.+| .+.|++++|+|+|++|++|+.||+|
T Consensus 348 ~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 348 TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT----CTTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEE
T ss_pred ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc----ccccceeeecC--CCceEEEEeCCCCCeEEEEECCCEE
Confidence 66654323458899999999999999888 9999983 33444455554 7899999999999999999999999
Q ss_pred EEecCCCC
Q 011256 477 RVFGLPGN 484 (490)
Q Consensus 477 ~iw~~~~~ 484 (490)
++|++...
T Consensus 422 ~lwd~~~~ 429 (524)
T 2j04_B 422 IITNAARR 429 (524)
T ss_dssp ECCBSCSS
T ss_pred EEEechHh
Confidence 99998643
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.1e-33 Score=270.38 Aligned_cols=262 Identities=18% Similarity=0.206 Sum_probs=209.1
Q ss_pred EeCCCCcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec-CCCEEEE
Q 011256 214 FDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVT 291 (490)
Q Consensus 214 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s 291 (490)
|++........+.+|...|.+++|+|++ ++|++|+.||.|++||+.+... .......+|...|.+++|+| ++.+|++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 3444566677888999999999999999 8999999999999999987521 22233347999999999999 6799999
Q ss_pred EECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEE
Q 011256 292 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF 371 (490)
Q Consensus 292 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~ 371 (490)
++.||.|++||+... .+..+.. ...+...|.+++|+|++.+|++|+.||.|++||+ +++.+..+.+|...|.+++|
T Consensus 137 ~~~d~~i~iwd~~~~-~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS-VIQVFAK--TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp EETTTEEEEEETTSC-EEEEEEC--CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred EeCCCEEEEEECCCC-ceEEEec--cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 999999999999964 4444432 2345578999999999999999999999999999 57788899999999999999
Q ss_pred cCCCC-EEEEEeCCC-EEEEECCC----CcceeeeecCCCCCCeeEEEEcC-CCCEEEEEecC--eEEEEEeecCCcceE
Q 011256 372 SENGY-YLATAAHDG-VKLWDLRK----LKNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASVKADWNC 442 (490)
Q Consensus 372 s~~~~-~l~~~~~d~-i~iwd~~~----~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d--i~v~~~~~~~~~~~~ 442 (490)
+|++. +|++++.|+ |++||+++ ...+..+. +...|.+++|+| ++.+|++++.| +++|++.........
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 289 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI 289 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence 99998 999999998 99999998 44444442 378999999999 99999999988 999998543332222
Q ss_pred eeeec---CC--------CCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 443 IKTFP---DL--------SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 443 ~~~~~---~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
..... .+ ...+.+..++|+|++++ +|+.||.|++||+..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 11100 00 01245566778888877 78899999999997654
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.8e-33 Score=270.44 Aligned_cols=249 Identities=16% Similarity=0.254 Sum_probs=215.3
Q ss_pred cCCCCCeEEEEecCC----C---CEEEEEeCCCcEEEEeCCCCcE-----EEEeccC-----ccCEEEEEEe----eCCC
Q 011256 184 KTSKPGIVSLDIHYS----K---DVIATGGVDTNAVLFDRPSGQI-----VTTLSGH-----SKKVTSVKFV----TEGD 242 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~----~---~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~ 242 (490)
..|...|++++|+|+ + .+|++++.||.|++||+.+++. +..+..| ...|.+++|+ |++.
T Consensus 59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 368889999999999 9 9999999999999999988886 8888888 5899999999 9999
Q ss_pred E-EEEEeCCCcEEEEeCCC------CCccc--eeeee-------cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 011256 243 L-FLTGSADKTVRVWQGSE------DGNYD--CKHTL-------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 306 (490)
Q Consensus 243 ~-l~s~s~dg~i~iwd~~~------~~~~~--~~~~~-------~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 306 (490)
+ |++|+.||.|++||+.. ..... ....+ ..|...|.+++|+|++ +|++++.||.|++||++++
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9 99999999999999987 42211 11144 4488999999999999 9999999999999999999
Q ss_pred eEEEEeecCCCCCC---CCCceEEEEcCCCcEEEEEcCC---CcEEEEECCCCceeeeecC-------------CCCCeE
Q 011256 307 ICLTQVSDAGTDGR---PEGYTSAAFHPDGLILGTGTSE---ALVKIWDVKSQANVAKFDG-------------HVGAVT 367 (490)
Q Consensus 307 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~ 367 (490)
..+..+... .+| ...+.+++|+|++.+|++++.| |.|++||+++++.+..+.. |...|.
T Consensus 218 ~~~~~~~~~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 218 RPLYNFESQ--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp EEEEEEECC--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred ceeEEEecc--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 988887641 124 5789999999999999999999 9999999999999999988 999999
Q ss_pred EEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC----CC---------------CCCeeEEEEcCCC---------
Q 011256 368 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS----DS---------------ETPTNSVDFDHSG--------- 418 (490)
Q Consensus 368 ~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~----~~---------------~~~i~~i~~s~~~--------- 418 (490)
+++|+|++.+|++++.|+ |++||+++++.+..+... .+ ...|.+++|+|++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 999999999999999998 999999999988888721 22 6789999999998
Q ss_pred -CEEEEEecC--eEEEEEee
Q 011256 419 -SYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 419 -~~l~~~~~d--i~v~~~~~ 435 (490)
.+|++++.| +++|++..
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC
T ss_pred cceEEEecCCCcEEEEEcCC
Confidence 799999988 99999843
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=268.30 Aligned_cols=241 Identities=21% Similarity=0.290 Sum_probs=213.1
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc-
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY- 264 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 264 (490)
|...|++++|+|++++|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++...
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 677999999999999999999999999999 678889999999999999999999999999999999999998764211
Q ss_pred ----------------------------------------------------ceeeeecccccceEEEEEecCCCEEEEE
Q 011256 265 ----------------------------------------------------DCKHTLKDHTAEVQAVTVHATNKYFVTA 292 (490)
Q Consensus 265 ----------------------------------------------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 292 (490)
.....+..|...|.+++|+|++++|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 1123445688899999999999999999
Q ss_pred ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEc
Q 011256 293 SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 372 (490)
+.||.|++||+.++..+..+. .|...+.+++|+|++ ++++++.||.|++||+++++.+..+..|...|.+++|+
T Consensus 266 ~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNSQNCFY-----GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp ETTSCEEEECSSSBSCSEEEC-----CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred cCCCEEEEEECCCCccceEec-----CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence 999999999999988777664 345789999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCC-EEEEECCCCc--------------------ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eE
Q 011256 373 ENGYYLATAAHDG-VKLWDLRKLK--------------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IR 429 (490)
Q Consensus 373 ~~~~~l~~~~~d~-i~iwd~~~~~--------------------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~ 429 (490)
|++.+|++++.++ |++||+++.. .+..+..+.....|.+++|+|++++|++++.+ ++
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 419 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS 419 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence 9999999999998 9999999877 66666655211289999999999999999988 99
Q ss_pred EEEE
Q 011256 430 VYQV 433 (490)
Q Consensus 430 v~~~ 433 (490)
+|++
T Consensus 420 iw~~ 423 (425)
T 1r5m_A 420 VVAI 423 (425)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9987
No 93
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-32 Score=259.11 Aligned_cols=248 Identities=23% Similarity=0.399 Sum_probs=216.3
Q ss_pred cEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWC 299 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~ 299 (490)
.....+.+|...|++++|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 334568899999999999999999999999999999999876 67788899999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC-----CcEEEEECCCCc-----------eeeeecCCC
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQA-----------NVAKFDGHV 363 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~-----------~~~~~~~~~ 363 (490)
+||+.+++.+..+.. ...+.+++|+|++.+|++++.+ |.|++||+..+. .+..+..|.
T Consensus 100 iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVATWKS------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEEEEC------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEEeec------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 999999998888762 3789999999999999999999 999999997653 333444555
Q ss_pred C--CeEEEEEcCCCCEEEEEeCCC-EEEEECCC-CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecC
Q 011256 364 G--AVTAISFSENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK 437 (490)
Q Consensus 364 ~--~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~ 437 (490)
+ .+.+++|+|++.+|++++.++ |++||+++ ......+..+ ...|.+++|+|++.+|++++.+ +++|++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~---- 247 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH--EKSISDMQFSPDLTYFITSSRDTNSFLVDV---- 247 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET----
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC--CCceeEEEECCCCCEEEEecCCceEEEEEC----
Confidence 5 899999999999999999998 99999998 6777777665 6789999999999999999988 999998
Q ss_pred CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC--------------cEEEecCCCCC
Q 011256 438 ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR--------------NLRVFGLPGND 485 (490)
Q Consensus 438 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~iw~~~~~~ 485 (490)
........+. +...+.+++|+|+++++++++.++ .+++|++..+.
T Consensus 248 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 248 STLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp TTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 4455555554 267899999999999999999998 89999987654
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=275.16 Aligned_cols=264 Identities=9% Similarity=0.085 Sum_probs=208.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+.. .
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----~ 78 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----G 78 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----C
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc----e
Confidence 46899999999999999999999999 755554 447999999999999999 5677666664431 2
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEE
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 346 (490)
...+ .|...|.+++|+|+|..|++++.||.|++||... ++..+. +...-....+.+++|+|||++|++|+.||.|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 2222 4578999999999999999999999999999654 444443 21111123699999999999999999999999
Q ss_pred EEECCCCce-------eeee----cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcce---eeeecCCCCCCeeE
Q 011256 347 IWDVKSQAN-------VAKF----DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF---RSFESSDSETPTNS 411 (490)
Q Consensus 347 iwd~~~~~~-------~~~~----~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~---~~~~~~~~~~~i~~ 411 (490)
+||+.++.. +.++ .+|...|.+++|+|+| +++++.|+ |++||+...... ..+.. .+...|.+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~s 231 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITD 231 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEE
Confidence 999998753 5665 5677899999999999 67777776 999999887742 33432 23678999
Q ss_pred EEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEE--cCCCCeEEEEeCCCcEEEecCC
Q 011256 412 VDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKF--GPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
++|+ |++|++++.. |++|++ ..........+ |.+.|..+.| +||+..|++++.||. ++|.++
T Consensus 232 vaFs--g~~LASa~~~tIkLWd~----~~~~~~~~~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 232 LKIV--DYKVVLTCPGYVHKIDL----KNYSISSLKTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEE--TTEEEEECSSEEEEEET----TTTEEEEEECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEE--CCEEEEEeCCeEEEEEC----CCCeEEEEEcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999 6899988866 999997 33333222224 4889999999 999999999999999 999875
No 95
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-32 Score=270.25 Aligned_cols=257 Identities=21% Similarity=0.352 Sum_probs=209.6
Q ss_pred EEeccCccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCC-------CccceeeeecccccceEEEEEecCCC-EEEEEE
Q 011256 223 TTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSED-------GNYDCKHTLKDHTAEVQAVTVHATNK-YFVTAS 293 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~ 293 (490)
.....|.+.|++++|+|+ +.+|++|+.||.|++|++... +.......+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445579999999999997 679999999999999998751 12366777889999999999999988 999999
Q ss_pred CCCeEEEEeCCCCeEEEE-ee-cCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCC---ceeeeecCCCCCeE
Q 011256 294 LDNTWCFYDLSSGICLTQ-VS-DAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQ---ANVAKFDGHVGAVT 367 (490)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 367 (490)
.||.|++||+..+..... +. .....+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432100 00 001235668899999999 7789999999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEeCCC-EEEEECCC-CcceeeeecCCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEEeecCCc--
Q 011256 368 AISFSENGY-YLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVKAD-- 439 (490)
Q Consensus 368 ~l~~s~~~~-~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~~~-- 439 (490)
+++|+|++. +|++|+.++ |++||+++ ...+..+..+ ...|.+++|+|++. +|++++.+ ++||++......
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999886 788999998 99999998 4556666655 77999999999985 68888877 999998542211
Q ss_pred --------ceEeeeecCCCCCcceEEEEEcCCCC-eEEEEeCCCcEEEecCCC
Q 011256 440 --------WNCIKTFPDLSGTGKATCVKFGPDAK-YIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 440 --------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~ 483 (490)
...+..+..| ...|.+++|+|++. +|++++.||.|+||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 2445555554 77899999999999 899999999999999864
No 96
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-34 Score=275.73 Aligned_cols=246 Identities=15% Similarity=0.145 Sum_probs=196.8
Q ss_pred eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC
Q 011256 225 LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS 304 (490)
Q Consensus 225 ~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~ 304 (490)
+..+.++|++++|+|++++|++|+.||.|++||+.++ .+.....+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 3446778999999999999999999999999999863 224667788999999999999999999999999999999999
Q ss_pred CCe---EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc---eeeeecC-CCCCeEEEEEcCCCCE
Q 011256 305 SGI---CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA---NVAKFDG-HVGAVTAISFSENGYY 377 (490)
Q Consensus 305 ~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~-~~~~i~~l~~s~~~~~ 377 (490)
++. ....+ .+|...|.+++|+|++.+|++|+.|+.|++||+++++ ....+.. |...|++++|+|++.+
T Consensus 86 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 86 PDGTWKQTLVL-----LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ---CCCCEEEC-----CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred CCCceeeeeEe-----cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 877 22222 3466899999999999999999999999999999887 4677777 9999999999999999
Q ss_pred EEEEeCCC-EEEEECCC------------------CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeec
Q 011256 378 LATAAHDG-VKLWDLRK------------------LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASV 436 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~------------------~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~ 436 (490)
|++++.|+ |++||++. ++.+..+ .+...|.+++|+|++++|++++.| +++|++...
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999998 99999963 2333333 447889999999999999999998 999999654
Q ss_pred CCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 437 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
......+..+..| ...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 238 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 4333335566665 7789999999999999998866655 66665
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.8e-33 Score=274.04 Aligned_cols=254 Identities=20% Similarity=0.275 Sum_probs=198.5
Q ss_pred EEeccCccCEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEE
Q 011256 223 TTLSGHSKKVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCF 300 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~i 300 (490)
....+|...|+||+|+| ++++||+|+.||+|+|||+..+.. .....+.+|.+.|++|+|+| ++++|++|+.||+|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34556888999999999 567999999999999999987532 44556678999999999998 6789999999999999
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCC-EEE
Q 011256 301 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGY-YLA 379 (490)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~ 379 (490)
||++++....... ...+...+.+++|+|++.+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. +|+
T Consensus 192 wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 192 QDFKGNILRVFAS---SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EETTSCEEEEEEC---CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred eeccCCceeEEec---cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 9998765543332 22334568899999999999999999999999986 456778889999999999999875 788
Q ss_pred EEeCCC-EEEEECCCCcceeeeec-CCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCC----
Q 011256 380 TAAHDG-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG---- 451 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~---- 451 (490)
+++.|+ |+|||+++.+....+.. ..|...|.+++|+|+|.+|++++.| ++||++.. +.....+..|.+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~----~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ----WDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS----SSSEEEECCCCCCCCS
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC----CccceEEecccccccc
Confidence 899998 99999998776544432 3347889999999999999999998 99999843 333333333211
Q ss_pred CcceEEEEEcCCCCeEEEEe------------CCCcEEEecCCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGS------------MDRNLRVFGLPGND 485 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~------------~dg~v~iw~~~~~~ 485 (490)
...+....|+|++.++++++ .++.|++|+..++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 11233456777776666654 34579999987654
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.2e-33 Score=270.50 Aligned_cols=247 Identities=19% Similarity=0.293 Sum_probs=212.0
Q ss_pred cccCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCc
Q 011256 182 LHKTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSG-------QIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKT 252 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~ 252 (490)
...+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++|+.||.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 3567899999999999 8999999999999999999887 5678889999999999999998 69999999999
Q ss_pred EEEEeCCCCCccceeeee--cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC-CceEEEE
Q 011256 253 VRVWQGSEDGNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAF 329 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 329 (490)
|++||+.++ .....+ ..|...|.+++|+|++++|++++.||.|++||++++..+..+.. .|.. .+.++.|
T Consensus 156 i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~ 228 (402)
T 2aq5_A 156 ILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR----PHEGTRPVHAVF 228 (402)
T ss_dssp EEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC----SSCSSSCCEEEE
T ss_pred EEEEECCCC---CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc----CCCCCcceEEEE
Confidence 999999886 677777 78999999999999999999999999999999999998887732 2223 4899999
Q ss_pred cCCCcEEEEE---cCCCcEEEEECCCCce-eeeec-CCCCCeEEEEEcCCCCEEEEEe-CCC-EEEEECCCCcc-eeeee
Q 011256 330 HPDGLILGTG---TSEALVKIWDVKSQAN-VAKFD-GHVGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKN-FRSFE 401 (490)
Q Consensus 330 ~~~~~~l~~g---~~dg~i~iwd~~~~~~-~~~~~-~~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~-~~~~~ 401 (490)
+|++.+|++| +.|+.|++||+++++. +.... .+...+.+++|+|++.+|++++ .|+ |++||+.+.+. +..+.
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999999999 7999999999988654 33332 4677899999999999997554 577 99999998875 55555
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEee
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASADIRVYQVAS 435 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~ 435 (490)
.+.+...+.+++|+|++.++++++..+++|++..
T Consensus 309 ~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 309 MFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHE 342 (402)
T ss_dssp EECCSSCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred ccccCCcccceEEecccccceecceeEEEEEcCC
Confidence 5545689999999999999887555599999854
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.2e-33 Score=274.17 Aligned_cols=254 Identities=16% Similarity=0.278 Sum_probs=202.8
Q ss_pred CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--------ccceeeeecccc------------cceEEEEEecCC-
Q 011256 228 HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--------NYDCKHTLKDHT------------AEVQAVTVHATN- 286 (490)
Q Consensus 228 h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~------------~~v~~l~~~~~~- 286 (490)
+.+.|++++|+|+|++|++|+.||.|+||++.+.. .+.....+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999988653 123577788998 889999999998
Q ss_pred -CEEEEEECCCeEEEEeCCCCeEEEEee-----------------------------------cCCCCCCCCCceEEEEc
Q 011256 287 -KYFVTASLDNTWCFYDLSSGICLTQVS-----------------------------------DAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 287 -~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~~~~~~v~~~~~~ 330 (490)
.+|++++.||.|++||+.++....... .....+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 799999999999999998755421100 00024677899999999
Q ss_pred CCCcEEEEEcCCCcEEEEECCC-Cceee-------eecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcc----
Q 011256 331 PDGLILGTGTSEALVKIWDVKS-QANVA-------KFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN---- 396 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~---- 396 (490)
|++.+|++| .||.|++||+++ +..+. .+.+|...|++++|+|++ .+|++++.|+ |++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999999 799999999984 44444 356789999999999998 9999999998 99999998876
Q ss_pred eeeeecCCC----------CCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCc------------
Q 011256 397 FRSFESSDS----------ETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTG------------ 453 (490)
Q Consensus 397 ~~~~~~~~~----------~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~------------ 453 (490)
...+..+.. ...|.+++|+|+|++|++++.. +++|++.. ....+..+..|....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNM---ENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTC---CSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCC---Cccccceeecccccccccccccccccc
Confidence 556655421 1289999999999999999887 99999843 134445555542110
Q ss_pred -ceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 454 -KATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 454 -~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.+..++|+|++++|++|+.||.|++||+.++.
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 13459999999999999999999999998754
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-32 Score=263.76 Aligned_cols=281 Identities=11% Similarity=0.189 Sum_probs=215.0
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~ 262 (490)
..|...|++++|+|+|++|++|+.+| +++||..+++....... ..+..+++.++++.+ ++|+.|++|++||..++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~- 91 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK- 91 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence 67889999999999999999998775 78999988776655432 247888888888876 56778899999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCceEEEEcCCCcEEEE--E
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT--G 339 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--g 339 (490)
+++..+. |...|.++.|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++++ |
T Consensus 92 --~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--------~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 92 --QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--------FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp --EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--------EEEEEEEET--TEEEEEES
T ss_pred --cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--------CCceEEEEc--cEEEEeCC
Confidence 5666665 66799999998653 4443 4789999999987 55444431 234556666 45555 6
Q ss_pred cCCCcEEEEECCCCc----------------eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcceeeee
Q 011256 340 TSEALVKIWDVKSQA----------------NVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~~~~~ 401 (490)
+.||.|++||++++. .+..+.+|.+.|++++|+|+|.+|++|+.|+ |++||+++++.+..+.
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~ 235 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR 235 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 899999999999865 2678899999999999999999999999996 9999999999998887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcce-Ee-----------------eeecCCCCCcceEEEEEc
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWN-CI-----------------KTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~-~~-----------------~~~~~~~~~~~v~~~~~s 461 (490)
...+...|.+++|+|+|++|++++.| ++||++........ .+ ..+.. ........++|+
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~ 314 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV-DKHVRGCKIAWI 314 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC-CTTCCCCEEEES
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc-CCCCCceEEEEe
Confidence 43247899999999999999999998 99999854321111 00 00111 012234678999
Q ss_pred CCCCeEEEEeCCCcEEEecCCCCC
Q 011256 462 PDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 462 ~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+|+++|++++.||.+++|++..+.
T Consensus 315 ~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 315 SESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEEEEcCC
Confidence 999999999999999999986543
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=294.45 Aligned_cols=249 Identities=20% Similarity=0.336 Sum_probs=212.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEeccCccCEEEEEEeeC--CCEEEEEeCCCcEEEEe
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFVTE--GDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~dg~i~iwd 257 (490)
+..+|.+.|++++|+|++++|++|+.||.|++||+. ++..+..+.+|.+.|.+++|+|+ +++|++|+.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 457899999999999999999999999999999987 55778889999999999999987 89999999999999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC----
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP---- 331 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 331 (490)
+.++ .......+.+|...|.+++|+|+ +.++++|+.||.|++||+.++....... ..+|...|.+++|+|
T Consensus 84 ~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 84 EENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC--
T ss_pred CCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCcccc
Confidence 9874 22367778889999999999999 9999999999999999998874333222 224568899999999
Q ss_pred ---------CCcEEEEEcCCCcEEEEECCCC----ceeeeecCCCCCeEEEEEcCC---CCEEEEEeCCC-EEEEECCCC
Q 011256 332 ---------DGLILGTGTSEALVKIWDVKSQ----ANVAKFDGHVGAVTAISFSEN---GYYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 332 ---------~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~d~-i~iwd~~~~ 394 (490)
++.+|++|+.||.|++||++++ .....+.+|.+.|++++|+|+ +.+|++++.|+ |++||++++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5899999999999999999877 556677889999999999999 89999999998 999999986
Q ss_pred cce---eeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEe
Q 011256 395 KNF---RSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 395 ~~~---~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 434 (490)
... .......+...+.+++|+|+|.++++++.| +++|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 421 122223346789999999999999999988 9999986
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.4e-32 Score=262.08 Aligned_cols=255 Identities=12% Similarity=0.089 Sum_probs=209.0
Q ss_pred EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEEEE
Q 011256 223 TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFY 301 (490)
Q Consensus 223 ~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iw 301 (490)
....+|.+.|.+++|+|++.+|++|+.||.|++|++...........+..|...|.+++|+|+++ +|++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 33458999999999999999999999999999999987643234555668999999999999999 99999999999999
Q ss_pred eC-CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCC---------CceeeeecCCCCCeEEEEE
Q 011256 302 DL-SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS---------QANVAKFDGHVGAVTAISF 371 (490)
Q Consensus 302 d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~ 371 (490)
|+ .++.. ..+.. ..|...|.+++|+| +.+|++++.||.|++||+++ ++++..+. |...|.+++|
T Consensus 85 d~~~~~~~-~~~~~---~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 85 DLIGSPSF-QALTN---NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp CSSSSSSE-EECBS---CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EeccCCce-Eeccc---cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 99 87765 22221 02668999999999 99999999999999999988 77777776 8889999999
Q ss_pred cCCCCEEEEEeCCC-EEEEECCC-CcceeeeecCCCCCCeeEEEEcC-CCCEEEEEecC--eEEEEEeec--CCcceEee
Q 011256 372 SENGYYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDH-SGSYLAVASAD--IRVYQVASV--KADWNCIK 444 (490)
Q Consensus 372 s~~~~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d--i~v~~~~~~--~~~~~~~~ 444 (490)
+|++ +++++.++ |++||+++ ...........+...+.+++|+| ++.++++++.+ +++|+++.. ........
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9887 88888887 99999998 65433333334467899999999 99999999998 999998654 11123344
Q ss_pred eecCCC-------CCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 445 TFPDLS-------GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 445 ~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.+..|. +...|.+++|+|++++|++|+.||.|++||+..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 454442 24489999999999999999999999999998654
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=263.66 Aligned_cols=240 Identities=19% Similarity=0.249 Sum_probs=204.3
Q ss_pred CCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCCCc-EEEEeccCccCEEEEEE------eeCCCEEEEEeCCCcEE
Q 011256 185 TSKPGIVSLDIHYS---KDVIATGGVDTNAVLFDRPSGQ-IVTTLSGHSKKVTSVKF------VTEGDLFLTGSADKTVR 254 (490)
Q Consensus 185 ~h~~~I~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~l~s~s~dg~i~ 254 (490)
.|...|.+++|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++|+.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 67889999999998 6999999999999999999887 88899999999999965 67899999999999999
Q ss_pred EEeCCCCCccceeeeeccccc----ceEEEE----EecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE
Q 011256 255 VWQGSEDGNYDCKHTLKDHTA----EVQAVT----VHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~----~v~~l~----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
+||+.... .....+..|.+ .|.++. |+|++.++++++.||.|++||++++....... +...+.+
T Consensus 143 vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~v~~ 214 (357)
T 3i2n_A 143 VWDPRQKD--DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN------IKNGVCS 214 (357)
T ss_dssp EECTTSCS--SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEE
T ss_pred EEeCCCCC--CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC------CCCceEE
Confidence 99998763 24455544443 899998 67899999999999999999999998765543 3478999
Q ss_pred EEEcC---CCcEEEEEcCCCcEEEEECCCCceeeeec-----CCCCCeEEEEEcCCCC-EEEEEeCCC-EEEEECCCCc-
Q 011256 327 AAFHP---DGLILGTGTSEALVKIWDVKSQANVAKFD-----GHVGAVTAISFSENGY-YLATAAHDG-VKLWDLRKLK- 395 (490)
Q Consensus 327 ~~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~s~~~~-~l~~~~~d~-i~iwd~~~~~- 395 (490)
++|+| ++.+|++|+.||.|++||+++++.+..+. +|...|++++|+|++. +|++++.|+ |++||++...
T Consensus 215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 99999 99999999999999999998876655554 8999999999999998 899999998 9999998643
Q ss_pred ------------------ceeeeecCCCCCCeeEEEEcCCCCEEE-EEecC--eEEEEEe
Q 011256 396 ------------------NFRSFESSDSETPTNSVDFDHSGSYLA-VASAD--IRVYQVA 434 (490)
Q Consensus 396 ------------------~~~~~~~~~~~~~i~~i~~s~~~~~l~-~~~~d--i~v~~~~ 434 (490)
.+..+..+ ...|.+++|+|++++|+ +++.| ++||++.
T Consensus 295 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 295 RSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp C--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 23334433 77899999999999998 68877 9999983
No 104
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.3e-31 Score=252.19 Aligned_cols=246 Identities=22% Similarity=0.372 Sum_probs=214.4
Q ss_pred ccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 183 HKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+|...|.+++|+|++++|++|+.||.|++|+............+...+..+.+++++.+|++|+.|+.+++||.....
T Consensus 82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence 46788999999999999999999999999999999999888888899999999999999999999999999999987642
Q ss_pred ccceeeeecccccceEEEEEecCC--CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATN--KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
.......+|...+.+++|++++ .++++++.|+.|++||+.++..+..+. +|...|++++|+|++.+|++|+
T Consensus 162 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 162 --KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-----GHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp --EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-----CCSSCEEEEEECTTSSEEEEEE
T ss_pred --eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-----CCCCcEEEEEECCCCCEEEEEe
Confidence 3445567899999999998765 578999999999999999999887765 4568899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeec-------CCCCCCeeEEE
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES-------SDSETPTNSVD 413 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~-------~~~~~~i~~i~ 413 (490)
.||.|++||+++.+.+..+..+ ..|.++.|+|++.+++++.++.|++||++....+..+.. ..+...|.+++
T Consensus 235 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred CCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 9999999999999999888754 689999999998877766644599999998776655442 23467899999
Q ss_pred EcCCCCEEEEEecC--eEEEEEeec
Q 011256 414 FDHSGSYLAVASAD--IRVYQVASV 436 (490)
Q Consensus 414 ~s~~~~~l~~~~~d--i~v~~~~~~ 436 (490)
|+|+|++|++|+.| |+||++.++
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999999999998 999998543
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.4e-32 Score=266.47 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=210.5
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..|...|++|+|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|.++.| ++.+|++|+.|+.+++||.....
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~- 220 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE- 220 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccc-
Confidence 357788999999999999999999999999999999999999999999999877 67899999999999999987653
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEE--Ec
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGT--GT 340 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--g~ 340 (490)
..+..+.+|...+..+.|+|++.++++++.|+.+++|+..++........ ....|...|.+++|+|++ .++++ |+
T Consensus 221 -~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~-~~~~~~~~V~~~~~~p~~~~~la~~~gs 298 (420)
T 4gga_A 221 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGT 298 (420)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE-EECCCSSCEEEEEECTTCTTEEEEEECT
T ss_pred -eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee-eecccCCceeeeeeCCCcccEEEEEeec
Confidence 56677889999999999999999999999999999999987653221110 123456889999999965 55554 46
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
.|+.|++||+.+++++..+..+ ..+.++.|++++..+++++ .|+ |+|||+++++.+..+..| ...|.+++|+|+
T Consensus 299 ~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spd 375 (420)
T 4gga_A 299 SDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPD 375 (420)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred CCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCC
Confidence 7999999999999999888755 5789999999999988876 456 999999999999888765 789999999999
Q ss_pred CCEEEEEecC--eEEEEEe
Q 011256 418 GSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 418 ~~~l~~~~~d--i~v~~~~ 434 (490)
|.+|++|+.| |+||++.
T Consensus 376 g~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 376 GATVASAAADETLRLWRCF 394 (420)
T ss_dssp SSCEEEEETTTEEEEECCS
T ss_pred CCEEEEEecCCeEEEEECC
Confidence 9999999999 9999984
No 106
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=8.3e-32 Score=265.51 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=231.0
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-----EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-----TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++||+.++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~- 201 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL- 201 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-
Confidence 346699999977788888889999999999998887 44578899999999999999999999999999999876
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT- 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~- 340 (490)
.....+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+... ..+.+++|+|++..+++++
T Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 202 --AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI------GLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp --CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC------SEEEEEEECTTSSEEEEEEE
T ss_pred --eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC------CCceEEEEcCCCCEEEEEEC
Confidence 66677778899999999999999886555 7999999999999887766532 4589999999999998887
Q ss_pred -------CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEE-EEEeCCC-EEEEECCCCcceeeeecCCCCCCeeE
Q 011256 341 -------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL-ATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 341 -------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l-~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
.||.|++||+.+++.+..+. +...+.+++|+|++..+ ++++.++ |++||+.+++....+.. ...+.+
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~ 349 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV---FDKPNT 349 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC---CCCCCe
Confidence 58899999999988776663 55688999999999755 5556677 99999999888777763 567899
Q ss_pred EEEcCCCCEEEEEec-----------------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC-C
Q 011256 412 VDFDHSGSYLAVASA-----------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-D 473 (490)
Q Consensus 412 i~~s~~~~~l~~~~~-----------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-d 473 (490)
++|+|+|+++++++. .+.+|++ .....+..+.. ...+.+++|+|+|++|++++. |
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT----TTDTVKEFWEA---GNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET----TTTEEEEEEEC---SSSEEEEEECTTSCEEEEEETTT
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC----CCCcEEEEecC---CCCCceEEEcCCCCEEEEEECCC
Confidence 999999999988876 3777776 44555555554 457899999999999998875 9
Q ss_pred CcEEEecCCC
Q 011256 474 RNLRVFGLPG 483 (490)
Q Consensus 474 g~v~iw~~~~ 483 (490)
|.|++|++++
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 9999999864
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.2e-32 Score=268.23 Aligned_cols=247 Identities=21% Similarity=0.356 Sum_probs=207.7
Q ss_pred cCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCC----------CcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCC
Q 011256 184 KTSKPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPS----------GQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADK 251 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg 251 (490)
..|.+.|++++|+|+ +.+|++++.||.|++|++.+ ...+..+.+|...|.+++|+|++. +|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 457889999999997 67999999999999999876 567788899999999999999988 999999999
Q ss_pred cEEEEeCCCCCc----cceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCC---eEEEEeecCCCCCCCCC
Q 011256 252 TVRVWQGSEDGN----YDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSG---ICLTQVSDAGTDGRPEG 323 (490)
Q Consensus 252 ~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 323 (490)
.|++|++..... ......+.+|...|.+++|+| ++.+|++++.||.|++||++++ ..+..+. .|...
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~ 279 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-----AHTAE 279 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-----CCSSC
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-----cCCCC
Confidence 999999987422 122456678999999999999 6789999999999999999987 3444443 45588
Q ss_pred ceEEEEcCCCc-EEEEEcCCCcEEEEECCC-CceeeeecCCCCCeEEEEEcCCC-CEEEEEeCCC-EEEEECCCCcc---
Q 011256 324 YTSAAFHPDGL-ILGTGTSEALVKIWDVKS-QANVAKFDGHVGAVTAISFSENG-YYLATAAHDG-VKLWDLRKLKN--- 396 (490)
Q Consensus 324 v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~d~-i~iwd~~~~~~--- 396 (490)
|++++|+|++. +|++|+.||.|++||+++ +.++..+..|...|++++|+|++ .+|++++.++ |+|||++....
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 99999999886 799999999999999998 56788888999999999999998 5789999888 99999987321
Q ss_pred ---------eeeeecCCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEEee
Q 011256 397 ---------FRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVAS 435 (490)
Q Consensus 397 ---------~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~ 435 (490)
...+....+...|.+++|+|++. +|++++.+ ++||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 12222233467899999999999 88888887 99999843
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=287.92 Aligned_cols=256 Identities=17% Similarity=0.225 Sum_probs=208.5
Q ss_pred EEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecC--CCEEEEEECCCeEE
Q 011256 222 VTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHAT--NKYFVTASLDNTWC 299 (490)
Q Consensus 222 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~i~ 299 (490)
+..+.+|.+.|++++|+|++++|++|+.||+|+|||+..+ .......+.+|.+.|++++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 3467899999999999999999999999999999998742 23677788899999999999988 89999999999999
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC--CcEEEEEcCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcC--
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD--GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSE-- 373 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~-- 373 (490)
+||+.++....... ..+|...|.+++|+|+ +.++++|+.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~ 157 (753)
T 3jro_A 81 IWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (753)
T ss_dssp EEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred EEECCCCccccccc---ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence 99999987332222 2256689999999999 9999999999999999998873 3455678999999999999
Q ss_pred -----------CCCEEEEEeCCC-EEEEECCCCcc----eeeeecCCCCCCeeEEEEcCC---CCEEEEEecC--eEEEE
Q 011256 374 -----------NGYYLATAAHDG-VKLWDLRKLKN----FRSFESSDSETPTNSVDFDHS---GSYLAVASAD--IRVYQ 432 (490)
Q Consensus 374 -----------~~~~l~~~~~d~-i~iwd~~~~~~----~~~~~~~~~~~~i~~i~~s~~---~~~l~~~~~d--i~v~~ 432 (490)
++.+|++|+.|+ |++||+++... ...+. .+...|.+++|+|+ +.+|++++.| +++|+
T Consensus 158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 589999999998 99999988743 33333 34789999999999 8999999988 99999
Q ss_pred EeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 433 VASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
+......... .......+.+.|++++|+|+|.+|++|+.||.|++|++..+
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBC-CBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCccee-EEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9553321111 11222234778999999999999999999999999999853
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-31 Score=246.46 Aligned_cols=243 Identities=19% Similarity=0.276 Sum_probs=207.4
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeE
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 298 (490)
.+....+.+|.+.|.+++| +++.+|++|+.||.|++||+.+. .....+..|...|.+++|+|+++++++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 3678889999999999999 99999999999999999999775 6677788899999999999999999999999999
Q ss_pred EEEeCCCCe---EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-C
Q 011256 299 CFYDLSSGI---CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-N 374 (490)
Q Consensus 299 ~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~ 374 (490)
++|++.... ....+ .+|...|.++.| ++.++++++.||.|++|| .++.+..+..|...+.++.|+| +
T Consensus 84 ~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTL-----IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp EEEETTCCTTSCC-CEE-----CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT
T ss_pred EEEEeeecCCCCcccch-----hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC
Confidence 999987653 23333 256688999999 577999999999999999 6778888889999999999998 8
Q ss_pred CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCC
Q 011256 375 GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 375 ~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
+.++++++.++ |++||.. +....+.. .+...+.+++|+|++. +++++.+ +++|++ .....+..+..|
T Consensus 155 ~~~l~~~~~d~~i~i~d~~--~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~----~~~~~~~~~~~~-- 224 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQND--KVIKTFSG-IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM----HTGDVLRTYEGH-- 224 (313)
T ss_dssp TTEEEEEETTSCEEEEETT--EEEEEECS-SCSSCEEEEEEEETTE-EEEEETTSEEEEEET----TTCCEEEEEECC--
T ss_pred CCEEEEEECCCCEEEEecC--ceEEEEec-cCcccEEEEEEcCCCe-EEEccCCCeEEEEEC----CchhhhhhhhcC--
Confidence 99999999998 9999943 34444443 1367899999999998 7777777 999998 445666777665
Q ss_pred CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
...|++++|+|++ .|++++.||.|++|++..+.
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred CceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 7899999999999 68899999999999998764
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.5e-30 Score=251.40 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=218.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCccceeeeecccccceE
Q 011256 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQ 278 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 278 (490)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|+++++ ++++.|+.|++||+.++ +....+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-Ccc
Confidence 4678889999999999999999999887754 8999999999976 67779999999999876 5666665444 899
Q ss_pred EEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE-EEEcCCCcEEEEECCCCcee
Q 011256 279 AVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEALVKIWDVKSQANV 356 (490)
Q Consensus 279 ~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~ 356 (490)
+++|+|+++++++++ .++.|++||+.+++.+..+... ..+.+++|+|+++.+ ++++.++.|++||+.+++.+
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 999999999886555 6799999999999988777633 568999999999877 68888999999999999988
Q ss_pred eeecCCCCCeEEEEEcCCCCEEE-EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEec---C--eE
Q 011256 357 AKFDGHVGAVTAISFSENGYYLA-TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA---D--IR 429 (490)
Q Consensus 357 ~~~~~~~~~i~~l~~s~~~~~l~-~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~---d--i~ 429 (490)
..+..+ ..+.+++|+|++.+|+ +++.++ |++||+++++....+.. ...+.+++|+|++++|++++. + +.
T Consensus 152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 888765 4679999999998884 556666 99999999887777664 457899999999999998873 4 89
Q ss_pred EEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeE-EEEeCCCcEEEecCCCC
Q 011256 430 VYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYI-AVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~ 484 (490)
+|++ .....+..+..+ ..+.+++|+|+|++| ++++.|+.|++||+..+
T Consensus 228 ~~d~----~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 228 MIDT----GTNKITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEET----TTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEC----CCCeEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9987 445556666553 357899999999987 56788999999999864
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.5e-30 Score=250.58 Aligned_cols=285 Identities=14% Similarity=0.188 Sum_probs=200.2
Q ss_pred cCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeC---CCEEEEEeCCCcEEEEeCC
Q 011256 184 KTSKPGIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE---GDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 184 ~~h~~~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~ 259 (490)
..|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.++++|+.||.|++||+.
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 45889999999999 77899999999999999999998888877 7788999999884 4499999999999999998
Q ss_pred CCCccceeeeecccccceEEEEEecCCC-EEEEEECCCeEEEEeCCCCe-EEEEeec----------CCCCCCCCCceEE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNK-YFVTASLDNTWCFYDLSSGI-CLTQVSD----------AGTDGRPEGYTSA 327 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~----------~~~~~~~~~v~~~ 327 (490)
++ .....+..|...|.+++|+|++. .|++++.||.|++||++++. .+..+.. .....|...|.++
T Consensus 175 ~~---~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 175 SG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SS---CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred Cc---ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 76 66778889999999999999998 58999999999999998765 2222211 1114577889999
Q ss_pred EEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCC-----CCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 328 AFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 328 ~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
+|+|++.+|++++.||.|++||+++++....+..+ ...+........+..+++++.++ |++||+.+++.+..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 99999999999999999999999988766554322 11222222223344445555555 9999999999988887
Q ss_pred cCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-CCCeEEEEeCCCcEEE
Q 011256 402 SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGSMDRNLRV 478 (490)
Q Consensus 402 ~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~i 478 (490)
.+ ...|.+++|+|++.+|++++.| +++|++.. ...+...... .....+.+ +...+.+++.|+.+++
T Consensus 332 ~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (408)
T 4a11_B 332 GH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSL----YEPVPDDDET-----TTKSQLNPAFEDAWSSSDEEGGTSA 400 (408)
T ss_dssp CC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred cC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC----CCccCCCCce-----EeccccccccceeecccCccCceee
Confidence 65 7899999999999999999988 99999843 3333332221 11122333 3344556778999999
Q ss_pred ecCCC
Q 011256 479 FGLPG 483 (490)
Q Consensus 479 w~~~~ 483 (490)
|+.+.
T Consensus 401 W~~~~ 405 (408)
T 4a11_B 401 WSHPQ 405 (408)
T ss_dssp -----
T ss_pred cCCcc
Confidence 98764
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.2e-30 Score=254.75 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=205.8
Q ss_pred cCCCCCeEEEEecCCCCEE-EEEeCCCcEEEEeCC--CCcEEEEec--cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeC
Q 011256 184 KTSKPGIVSLDIHYSKDVI-ATGGVDTNAVLFDRP--SGQIVTTLS--GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG 258 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~ 258 (490)
..|.+.|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++.+|++|+.||.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 3567799999999999986 899999999999998 888888776 56789999999999999999999999999999
Q ss_pred CCCCccc-eeeeecccccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc
Q 011256 259 SEDGNYD-CKHTLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 334 (490)
Q Consensus 259 ~~~~~~~-~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (490)
....... +...+.+|...|++++|+|+ +.+|++|+.|+.|++||+.++..+..+. .+|...|.+++|+ ++.
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL----FGHKHFVSSICCG-KDY 253 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC----CCCSSCEEEEEEC-STT
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee----cCCCCceEEEEEC-CCC
Confidence 8764332 44477889999999999999 9999999999999999999988776642 3566899999999 999
Q ss_pred EEEEEcCCCcEEEEECCCCceeeeecC-------------------------CCCCeEEEEEcCCCCEEEEEe-CCC-EE
Q 011256 335 ILGTGTSEALVKIWDVKSQANVAKFDG-------------------------HVGAVTAISFSENGYYLATAA-HDG-VK 387 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd~~~~~~~~~~~~-------------------------~~~~i~~l~~s~~~~~l~~~~-~d~-i~ 387 (490)
+|++|+.|+.|++||+++++.+..+.. ....|.+++|+|++.+|++++ .++ |+
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 999999999999999999988877752 235799999999999999998 667 99
Q ss_pred EEEC--CCC---cceeeeecCCCCCCeeEEEEcCCCCEEEEEec-------C-eEEEEEeecCC
Q 011256 388 LWDL--RKL---KNFRSFESSDSETPTNSVDFDHSGSYLAVASA-------D-IRVYQVASVKA 438 (490)
Q Consensus 388 iwd~--~~~---~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~-------d-i~v~~~~~~~~ 438 (490)
+||+ ... ..+..+..+ ..+.+++|+|++.++++++. + +.+|.++....
T Consensus 334 iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 334 ILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp EEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred EEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence 9999 544 445555543 67999999996544444442 2 79999865433
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=3.3e-31 Score=257.71 Aligned_cols=244 Identities=11% Similarity=0.128 Sum_probs=176.1
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-----EEeccCccCEEEEEEee--------CCCEEEEEeCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-----TTLSGHSKKVTSVKFVT--------EGDLFLTGSADK 251 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~--------~~~~l~s~s~dg 251 (490)
.|.+.+....+++++.+|++|+.|++|+|||..++... ..+.+|.+.|++++|+| ++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 34445555566677889999999999999999887553 34679999999999998 788999999999
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecC---------------
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDA--------------- 315 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------- 315 (490)
+|+|||+.+. .+...+..|...|.+++|+|++ .+|++++.||+|++||+.++.........
T Consensus 167 tv~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 167 TLIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp EEEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred eEEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 9999999775 5666777899999999999987 48999999999999999987654332211
Q ss_pred -----CCCCCCCCceEEEEc-CCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEE------------------E
Q 011256 316 -----GTDGRPEGYTSAAFH-PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAIS------------------F 371 (490)
Q Consensus 316 -----~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~------------------~ 371 (490)
...+|...+.++.|+ +++..|++++.|+.+++||+..+.....+..|...+..+. |
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 123566788899987 7999999999999999999988776666554444433333 3
Q ss_pred cC--CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 372 SE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 372 s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
+| ++.++++|+.|+ |++||+.++........+ ..+|.+++|+|+|++|++++.+ +.+|.+
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 33 344667778888 999999998887776655 6789999999999999999998 888876
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2.3e-30 Score=255.48 Aligned_cols=235 Identities=23% Similarity=0.444 Sum_probs=205.7
Q ss_pred cccCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 182 LHKTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 182 ~~~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
...+|.+.|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.+.
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC
Confidence 34578899999999 68899999999999999999999999999999999999995 569999999999999999886
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
........+.+|...|.++.| +++++++|+.||.|++||++++..+..+. +|...+.++.+ ++.++++|+.
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~--~~~~l~~g~~ 314 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQY--RDRLVVSGSS 314 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEE--ETTEEEEEET
T ss_pred CCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-----CCCCcEEEEEe--CCCEEEEEeC
Confidence 544444777899999999999 68999999999999999999999888876 34578999988 4679999999
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc---------ceeeeecCCCCCCeeE
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK---------NFRSFESSDSETPTNS 411 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~---------~~~~~~~~~~~~~i~~ 411 (490)
||.|++||+++++++..+.+|...|.+++| ++.+|++|+.|+ |++||++... .+..+..+ ...|.+
T Consensus 315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~ 390 (435)
T 1p22_A 315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFR 390 (435)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCC
T ss_pred CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEE
Confidence 999999999999999999999999999999 788999999998 9999997655 45555444 778999
Q ss_pred EEEcCCCCEEEEEecC--eEEEEEee
Q 011256 412 VDFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
++| ++.+|++++.| +++|++..
T Consensus 391 l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 391 LQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEE--CSSCEEECCSSSEEEEEC---
T ss_pred EEe--CCCEEEEEeCCCEEEEEECCC
Confidence 999 68889999988 99999844
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=6.7e-30 Score=245.61 Aligned_cols=262 Identities=16% Similarity=0.163 Sum_probs=208.8
Q ss_pred EEeCCCCcEEEEeccCccCEEEEEEeeC---CCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEE
Q 011256 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTE---GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF 289 (490)
Q Consensus 213 iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 289 (490)
.++....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+.+ ......+.+|...|.+++|+|++++|
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccccCCEEEEEECcCCCEE
Confidence 3456667778889999999999999998 5999999999999999998732 13346778899999999999999999
Q ss_pred EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEE--cCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeE
Q 011256 290 VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF--HPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT 367 (490)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 367 (490)
++++.||.|++||+.++..+.... |...|.+++| +|++.+|++++.||.|++||+++++.+..+..+. .+.
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~ 174 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQIAQ------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCY 174 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEE
T ss_pred EEEcCCCcEEEEEcCCCCceeecc------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cce
Confidence 999999999999999998776443 4588999999 8999999999999999999999999988888654 677
Q ss_pred EEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE----EEEEecC--eEEEEEeecCCcc
Q 011256 368 AISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY----LAVASAD--IRVYQVASVKADW 440 (490)
Q Consensus 368 ~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~----l~~~~~d--i~v~~~~~~~~~~ 440 (490)
++.+.+ ..+++++.++ +.+||++................+.++.+.++... +++++.+ +++|++..... .
T Consensus 175 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~ 251 (368)
T 3mmy_A 175 CADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-A 251 (368)
T ss_dssp EEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-H
T ss_pred EEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-c
Confidence 777764 4677777776 99999988655444333333556677777666554 8888888 99999854321 1
Q ss_pred eEeeeecCCCC----------CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 441 NCIKTFPDLSG----------TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 441 ~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.....+..|.. ...|++++|+|++++|++|+.||.|++||+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 23334444311 1269999999999999999999999999998653
No 116
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=7e-30 Score=240.62 Aligned_cols=242 Identities=18% Similarity=0.254 Sum_probs=206.6
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCc
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...+.++.+ ++.++++|+.++.+++|+.....
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~- 140 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE- 140 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-
Confidence 467788999999999999999999999999999999999999999998877655 67899999999999999987653
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc-E--EEEEc
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-I--LGTGT 340 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~--l~~g~ 340 (490)
.....+.+|...+.++.++++++++++++.||.|++||+.+++........ ...+...|.++.++|++. + +++++
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 141 -HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred -eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee-ecccCCceEEEEecCCCCcEEEEEecC
Confidence 566778899999999999999999999999999999999876543222111 224457899999999664 3 34677
Q ss_pred CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCC
Q 011256 341 SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHS 417 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~ 417 (490)
.++.|++||........... +...+..+.|++++..+++++ .|+ |++||+++++.+..+..| ...|++++|+|+
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spd 295 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPD 295 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTT
T ss_pred CCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCC
Confidence 88999999999887766655 667899999999999888765 456 999999999999888765 789999999999
Q ss_pred CCEEEEEecC--eEEEEE
Q 011256 418 GSYLAVASAD--IRVYQV 433 (490)
Q Consensus 418 ~~~l~~~~~d--i~v~~~ 433 (490)
|++|++|+.| |+||++
T Consensus 296 g~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 296 GATVASAAADETLRLWRC 313 (318)
T ss_dssp SSCEEEEETTTEEEEECC
T ss_pred CCEEEEEecCCeEEEEEC
Confidence 9999999999 999997
No 117
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.7e-30 Score=249.94 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=170.6
Q ss_pred CCCCCeEEEEecCCCCEEEEE--eCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATG--GVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
.+...+.+++|+|||++++++ +.|++|+|||+.+++.+..+. |...|.+++|+|+|++|++++.|+ +++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence 445678999999999987654 478999999999999988886 778899999999999999998654 5666655542
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCC----eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
.........|...|.+++|+|++.++++++.|+ .+++|++........... ...+|...|++++|+|||++|++
T Consensus 209 -~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 209 -CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp -EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEE
T ss_pred -ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEE
Confidence 122334567899999999999999999999887 688899887764322111 12345688999999999999999
Q ss_pred EcCCCcEEEEECCCCceeeee-cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC
Q 011256 339 GTSEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 393 (490)
|+.|+.|+|||+++++++..+ .+|...|++++|+|||++|++|+.|+ |+|||+..
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999885 78999999999999999999999998 99999964
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-31 Score=260.28 Aligned_cols=249 Identities=11% Similarity=0.096 Sum_probs=201.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc-----CEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-----KVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.|.+.|.+++|+|+|.+||+++.||.|++||... ++..+. |.. .|.+++|+|+|++|++|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5578999999999999999999999999999644 677777 665 49999999999999999999999999998
Q ss_pred CCCc----cceeeee----cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE---EEeecCCCCCCCCCceEEE
Q 011256 260 EDGN----YDCKHTL----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL---TQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 260 ~~~~----~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~ 328 (490)
++.. +-.+.++ .+|...|.+++|+|+| +++++.|++|++||+.++... ..+. .+|...|.+++
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~----~~h~~~V~sva 233 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ----NASRRKITDLK 233 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----CCCSSCCCCEE
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----ccccCcEEEEE
Confidence 7521 0134555 6788899999999999 889999999999999887732 2332 13557899999
Q ss_pred EcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEE--cCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCC
Q 011256 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISF--SENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~--s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~ 406 (490)
|+ |..|++++ ++.|++||+.+++......+|...|..+.| +|++..+++++.+|.++|...
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d-------------- 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED-------------- 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS--------------
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec--------------
Confidence 99 68888887 699999999988774444479999999999 999999999998877999876
Q ss_pred CCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 407 TPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.+.++|++..++.....+++|+. .+.....+ .+...|.+++|+|||+.+|+++
T Consensus 297 ----~~~~spd~~l~a~~d~~v~lW~~-----~g~~l~~~---~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 ----ELHVTADNIIAPYLEKKFKKWST-----IWNEFNNY---ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ----SEEEECCCSSHHHHHHHHHHTTT-----TTTSSSSS---CCEEEEEEEEECTTSSEEEEEE
T ss_pred ----cEEECCCceEEEEcCCEEEEEEC-----CCCceeee---ccceEEEEEEECCCCCEEEEEE
Confidence 15588999888776222888875 12222222 2255689999999999999886
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.7e-30 Score=251.30 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=165.8
Q ss_pred EeeCCCEEEEEeCCCcEEEEeCCCCCc--cceeeeecccccceEEEEEec--------CCCEEEEEECCCeEEEEeCCCC
Q 011256 237 FVTEGDLFLTGSADKTVRVWQGSEDGN--YDCKHTLKDHTAEVQAVTVHA--------TNKYFVTASLDNTWCFYDLSSG 306 (490)
Q Consensus 237 ~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~~--------~~~~l~s~~~dg~i~iwd~~~~ 306 (490)
+.+++.+|++|+.|++|+|||...+.. ......+.+|.+.|++++|+| ++++|++|+.|++|++||+.++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 344566899999999999999887532 123445789999999999998 7889999999999999999988
Q ss_pred eEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEEEECCCCceeeee-------------------------c
Q 011256 307 ICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKF-------------------------D 360 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~-------------------------~ 360 (490)
..+..+.. |...+.+++|+|++ .+|++|+.||.|++||+++++..... .
T Consensus 177 ~~~~~~~~-----~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 177 GPILAGYP-----LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEEEEEEE-----CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ceeeeecC-----CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 77766653 34789999999987 58999999999999999887543322 3
Q ss_pred CCCCCeEEEEEc-CCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC----------------CCCeeEEEEcC--CCCE
Q 011256 361 GHVGAVTAISFS-ENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS----------------ETPTNSVDFDH--SGSY 420 (490)
Q Consensus 361 ~~~~~i~~l~~s-~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~----------------~~~i~~i~~s~--~~~~ 420 (490)
+|...+.++.|+ +++..|++++.|+ +++||+........+..+.. ........|+| ++.+
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEE
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEE
Confidence 567788999986 7999999999998 99999987665443332210 11122233333 3345
Q ss_pred EEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 421 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
+++|+.| |++|++.. ......+..+ ...|.+++|+|||++||+++.+| +.+|.+
T Consensus 332 ~~sgs~Dg~V~lwd~~~----~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYE----KDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEETTTTEEEEEETTC----TTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEECCCCEEEEEECCC----CcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 6666666 99999843 3333333343 67899999999999999998766 555554
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.1e-27 Score=232.76 Aligned_cols=279 Identities=14% Similarity=0.125 Sum_probs=216.0
Q ss_pred CCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEE-EeCCCcEEEEeCCCCCccc
Q 011256 188 PGIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLT-GSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~ 265 (490)
..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++ ++.|+.|++||+.++ +
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~ 107 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---T 107 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---E
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC---e
Confidence 458999999999976 677789999999999999998888665 8999999999997754 556799999999886 5
Q ss_pred eeeeecccccceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE-EEEcCCC
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSEA 343 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg 343 (490)
....+.. ...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+... ..+.+++|+|++..+ ++++.++
T Consensus 108 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~dg~~l~~~~~~~~ 180 (391)
T 1l0q_A 108 VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG------RSPKGIAVTPDGTKVYVANFDSM 180 (391)
T ss_dssp EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC------SSEEEEEECTTSSEEEEEETTTT
T ss_pred EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC------CCcceEEECCCCCEEEEEeCCCC
Confidence 5555554 4578999999999977 67778999999999999988877643 457999999999877 6778899
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe---CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA---HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~---~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
.|++||+++++.+..+. +...+.+++|+|+|.+|++++ .++ |++||+++++.+..+..+ ..+.+++|+|+++
T Consensus 181 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~ 256 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGK 256 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred EEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC---CCccEEEEccCCC
Confidence 99999999998887776 456889999999999998887 456 999999999888777763 4578999999999
Q ss_pred EEEEE-ecC--eEEEEEeecCCcceEeeeecCCCCCc---c-e---------EEEEEcCCC----------CeEEEEeCC
Q 011256 420 YLAVA-SAD--IRVYQVASVKADWNCIKTFPDLSGTG---K-A---------TCVKFGPDA----------KYIAVGSMD 473 (490)
Q Consensus 420 ~l~~~-~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~---~-v---------~~~~~s~~~----------~~l~s~~~d 473 (490)
+|+++ +.+ +++|++ .....+..+..+.... . + ....|+.+. ..+...+.|
T Consensus 257 ~l~~s~~~d~~v~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDT----ATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332 (391)
T ss_dssp EEEEEETTTTEEEEEET----TTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBS
T ss_pred EEEEEcCCCCEEEEEEC----CCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCC
Confidence 88554 445 999997 3444444443321100 0 0 011122111 235556678
Q ss_pred CcEEEecCCCCC
Q 011256 474 RNLRVFGLPGND 485 (490)
Q Consensus 474 g~v~iw~~~~~~ 485 (490)
..+++|++..+.
T Consensus 333 ~~~~~W~~~~g~ 344 (391)
T 1l0q_A 333 ATEWKWDFGDGS 344 (391)
T ss_dssp CSEEEEECSSSC
T ss_pred ceEEEEECCCCc
Confidence 899999997654
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=242.27 Aligned_cols=232 Identities=11% Similarity=0.129 Sum_probs=182.8
Q ss_pred EeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC---------CCe
Q 011256 237 FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---------SGI 307 (490)
Q Consensus 237 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~---------~~~ 307 (490)
+.+++.+|++|+.||+|++||+.++ +.+..+. ...|.++.|+|. +++++.|++|++|+.. ++.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~---~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDS---KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSS---SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCC---cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence 4467889999999999999999886 4444443 467888889987 9999999999999766 344
Q ss_pred EEEEeecCCCCCCCCCceEEEEcC--CCcEEEEEcCCCcEEEEECCCCceeeeecC-CCCCeEEEEEcCCCCEEEEEeCC
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHP--DGLILGTGTSEALVKIWDVKSQANVAKFDG-HVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
.+.... .+|...|.+++|+| ++.+|++|+.||.|++||+++++.+..... +...|++++|+|+|.+|++|+.|
T Consensus 116 ~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 116 VLREIE----VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp EEEEEE----CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred eeEEee----cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 333333 23457899999999 999999999999999999999988766643 55689999999999999999999
Q ss_pred C-EEEEECCCCcce-eeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCC-CCcce--EEE
Q 011256 385 G-VKLWDLRKLKNF-RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLS-GTGKA--TCV 458 (490)
Q Consensus 385 ~-i~iwd~~~~~~~-~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~-~~~~v--~~~ 458 (490)
+ |++||+++++.. ..+.. .|..+|.+++|+|+|.+|++++.+ +++|++.... ....+..+. +...+ .++
T Consensus 192 g~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV----GTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp SCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST----TCBSSCCCBC-----CCEEE
T ss_pred CEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC----cceeecccccccccccceEE
Confidence 8 999999998877 56655 247899999999999999999977 9999984432 222222110 11222 479
Q ss_pred EEcCCCCeEEEEeC-CCcEEEecCCCCC
Q 011256 459 KFGPDAKYIAVGSM-DRNLRVFGLPGND 485 (490)
Q Consensus 459 ~~s~~~~~l~s~~~-dg~v~iw~~~~~~ 485 (490)
+|+|+|++|++++. |+.|+||++....
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 99999999999998 9999999986543
No 122
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.7e-28 Score=232.19 Aligned_cols=216 Identities=19% Similarity=0.316 Sum_probs=183.9
Q ss_pred ccCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCC---------cEEEEeccCccCEEEEEEeeC--CCEEEEEeC
Q 011256 183 HKTSKPGIVSLDIHY--SKDVIATGGVDTNAVLFDRPSG---------QIVTTLSGHSKKVTSVKFVTE--GDLFLTGSA 249 (490)
Q Consensus 183 ~~~h~~~I~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~ 249 (490)
...|...|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|+ +.+|++++.
T Consensus 53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 356889999999999 5999999999999999999876 568888999999999999999 999999999
Q ss_pred CCcEEEEeCCCCCccceee----------eecccccceEEEEEecC---CCEEEEEECCCeEEEEeCCCCeEEEEeecCC
Q 011256 250 DKTVRVWQGSEDGNYDCKH----------TLKDHTAEVQAVTVHAT---NKYFVTASLDNTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~----------~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 316 (490)
||.|++||+.+........ ....|...+.++.|+|+ +.++++++.|+.+.+|+...+.......
T Consensus 133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 209 (351)
T 3f3f_A 133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK--- 209 (351)
T ss_dssp TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE---
T ss_pred CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee---
Confidence 9999999998753221111 11257889999999997 8999999999999888888776533333
Q ss_pred CCCCCCCceEEEEcCCC----cEEEEEcCCCcEEEEECCCC---------------------------------------
Q 011256 317 TDGRPEGYTSAAFHPDG----LILGTGTSEALVKIWDVKSQ--------------------------------------- 353 (490)
Q Consensus 317 ~~~~~~~v~~~~~~~~~----~~l~~g~~dg~i~iwd~~~~--------------------------------------- 353 (490)
..+|...|.+++|+|++ .+|++|+.||.|++||++.+
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence 33567899999999998 89999999999999999875
Q ss_pred -------ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 354 -------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 354 -------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
+.+..+.+|...|++++|+|++.+|++++.|+ |++||+.+++....+.
T Consensus 290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp -CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 56677788999999999999999999999998 9999999876655443
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.8e-28 Score=224.17 Aligned_cols=275 Identities=13% Similarity=0.070 Sum_probs=188.5
Q ss_pred eEEEEecCCCC---EEEEEeCCCcEEEEeCCCC---cEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcE-EEEeCC--
Q 011256 190 IVSLDIHYSKD---VIATGGVDTNAVLFDRPSG---QIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTV-RVWQGS-- 259 (490)
Q Consensus 190 I~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i-~iwd~~-- 259 (490)
+.++-|-..+- .+++++. ..|++|+..++ +.++++.+|..+|..+.|.||.. ++.++-.+=.+ .++.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 44555555443 6667664 58999999988 88999999999999999998654 22222111111 122111
Q ss_pred CC-CccceeeeecccccceEEEEEecCCCEEEEEE--CCCeEEEEeC-CCCeEEEEeecCCCCCCCCCceEEEEcC---C
Q 011256 260 ED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS--LDNTWCFYDL-SSGICLTQVSDAGTDGRPEGYTSAAFHP---D 332 (490)
Q Consensus 260 ~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~ 332 (490)
.+ ..+.......+|...|..+ ++++.+.+++ .|+.|++|++ .+++.+..+. +|...++.++|++ +
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-----~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-----LMPPEETILTFAEVQGM 192 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-----ECCCSSCEEEEEEEETS
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeec-----cCCCceeeEEeeccCCC
Confidence 11 0011111113455455544 4555555543 5999999999 4577666554 3446788899999 7
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeeecCCC---CCeEEEEEcCCCCEE------------EEEeCCC-EEEEECCCCcc
Q 011256 333 GLILGTGTSEALVKIWDVKSQANVAKFDGHV---GAVTAISFSENGYYL------------ATAAHDG-VKLWDLRKLKN 396 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~l------------~~~~~d~-i~iwd~~~~~~ 396 (490)
+.+|++|+.|++|+|||+.+++++.++.+|. ..+.+++|+|+|.++ ++|+.|+ |++||..+++.
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 7999999999999999999999999998653 367788999999887 4566777 99999999887
Q ss_pred eeeeec---CCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcc-eEEEEEcCCCCeEEEE
Q 011256 397 FRSFES---SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK-ATCVKFGPDAKYIAVG 470 (490)
Q Consensus 397 ~~~~~~---~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~ 470 (490)
+..+.. ..+...+.+..+ ++.++++++.| |+|||+ ...+++.++.+| ... +.+++|+|||++|++|
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl----~tGk~l~tL~gH--~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL----LLGQCTALLPPV--SDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET----TTCSEEEEECCC----CCCCEEEECSSSSEEEEE
T ss_pred EEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC----CCCcEEEEecCC--CCCeEEEEEECCCCCEEEEE
Confidence 665431 122333433333 48899999988 999998 667788888775 444 4468999999999999
Q ss_pred eCCCcEEEecC
Q 011256 471 SMDRNLRVFGL 481 (490)
Q Consensus 471 ~~dg~v~iw~~ 481 (490)
+.|++|+||++
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 99999999986
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.3e-28 Score=233.18 Aligned_cols=247 Identities=13% Similarity=0.137 Sum_probs=180.8
Q ss_pred EEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEE-EE
Q 011256 213 LFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYF-VT 291 (490)
Q Consensus 213 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s 291 (490)
||++.+...+..+..|...|.+++|+|+|++|++|+.|| ++||++... ...... +...+..+.+.++++.+ ++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEE
Confidence 466667777777889999999999999999999998775 789998764 333222 22357888888888877 56
Q ss_pred EECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-ceeeeecCCCCCeEEEE
Q 011256 292 ASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-ANVAKFDGHVGAVTAIS 370 (490)
Q Consensus 292 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~ 370 (490)
++.|++|++||+.+++.+..+.. ...|.++.++++. ++++ .++.|++||+.++ +.+..+.. +...++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIKV------DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEEC------SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred ECCccEEEEEECCCCcEEEEEEC------CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 77889999999999999887753 2679999999875 3333 3789999999988 77666654 445566
Q ss_pred EcCCCCEEEE--EeCCC-EEEEECCCCc----------------ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---e
Q 011256 371 FSENGYYLAT--AAHDG-VKLWDLRKLK----------------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---I 428 (490)
Q Consensus 371 ~s~~~~~l~~--~~~d~-i~iwd~~~~~----------------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i 428 (490)
+++ .++++ |+.++ |++||++++. ....+..+ ...|.+++|+|+|.+|++++.| +
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v 220 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTII 220 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEE
Confidence 776 56666 46667 9999999765 14445444 7899999999999999999987 8
Q ss_pred EEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 429 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
+||++ .....+..+....|...|.+++|+|+|++|++++.||.|++|++..+.
T Consensus 221 ~iwd~----~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 221 RVFKT----EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEET----TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEC----CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 89998 556677777621247899999999999999999999999999997653
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.9e-28 Score=224.09 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=158.6
Q ss_pred CCCCeEEEEecCC----CCEEEEEeC--------------------CCcEEEEeC-CCCcEEEEeccCccCEEEEEEee-
Q 011256 186 SKPGIVSLDIHYS----KDVIATGGV--------------------DTNAVLFDR-PSGQIVTTLSGHSKKVTSVKFVT- 239 (490)
Q Consensus 186 h~~~I~~~~~~~~----~~~l~~~~~--------------------dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~- 239 (490)
+...|.+++|+|+ +.++++++. |+.|++|++ .+++.+..+.+|...+..++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 4457889999998 777777553 888999998 55888888888999999999998
Q ss_pred --CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccc---cceEEEEEecCCCEE------------EEEECCCeEEEEe
Q 011256 240 --EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT---AEVQAVTVHATNKYF------------VTASLDNTWCFYD 302 (490)
Q Consensus 240 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~l------------~s~~~dg~i~iwd 302 (490)
++.+|++|+.|++|+|||+.++ +++.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred CCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 6789999999999999999987 7778887543 468888999999876 5678899999999
Q ss_pred CCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeE-EEEEcCCCCEEEEE
Q 011256 303 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVT-AISFSENGYYLATA 381 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~ 381 (490)
..+++.+..+......+|...+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. +++|+|||++|++|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence 999998776542222344444443333 488999999999999999999999999998877655 68999999999999
Q ss_pred eCCC-EEEEEC
Q 011256 382 AHDG-VKLWDL 391 (490)
Q Consensus 382 ~~d~-i~iwd~ 391 (490)
+.|+ |+|||+
T Consensus 345 S~D~TIklWd~ 355 (356)
T 2w18_A 345 QKDGNIFVYHY 355 (356)
T ss_dssp CTTSCEEEEEE
T ss_pred ECCCcEEEecC
Confidence 9998 999996
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=6.1e-27 Score=230.67 Aligned_cols=279 Identities=15% Similarity=0.198 Sum_probs=216.9
Q ss_pred CCCeEEEE---ecCCCCEEEEE--------------eCCC--cEEEEeCCCC--cEEEEeccCccCEEEEEEeeCCCEEE
Q 011256 187 KPGIVSLD---IHYSKDVIATG--------------GVDT--NAVLFDRPSG--QIVTTLSGHSKKVTSVKFVTEGDLFL 245 (490)
Q Consensus 187 ~~~I~~~~---~~~~~~~l~~~--------------~~dg--~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~ 245 (490)
..++..++ |+|++..+++. +.++ .|..||..++ +.+..+..+. .+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence 34667777 77776655432 2233 5555565444 5566666554 466999999777888
Q ss_pred EEeCCCcEEEEeCCCCCccceee-----eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC
Q 011256 246 TGSADKTVRVWQGSEDGNYDCKH-----TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR 320 (490)
Q Consensus 246 s~s~dg~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 320 (490)
+++.|+.|++||+.++ +... .+.+|...|.+++|+|++.++++++.|+.|++||+.+++.+..+.. +
T Consensus 139 ~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-----~ 210 (433)
T 3bws_A 139 PLLEDEGMDVLDINSG---QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL-----T 210 (433)
T ss_dssp EBTTSSSEEEEETTTC---CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----S
T ss_pred EeCCCCeEEEEECCCC---eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC-----C
Confidence 8888999999999876 3333 3457888999999999999999999999999999999988877762 3
Q ss_pred CCCceEEEEcCCCcEEE-EEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe--------CCC-EEEEE
Q 011256 321 PEGYTSAAFHPDGLILG-TGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA--------HDG-VKLWD 390 (490)
Q Consensus 321 ~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--------~d~-i~iwd 390 (490)
...+.+++|+|++..++ +++.++.|++||+++++.+..+..+ ..+.+++|+|+|.+|++++ .++ |++||
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 36799999999998775 5558999999999999888887754 4699999999999999887 466 99999
Q ss_pred CCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEE-ecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeE
Q 011256 391 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA-SAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYI 467 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~-~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 467 (490)
+++++....+.. ...+.+++|+|+++.++++ +.+ +.+|++ ........+.. ...+.+++|+|+|++|
T Consensus 290 ~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 290 MDKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDL----KEKKVQKSIPV---FDKPNTIALSPDGKYL 359 (433)
T ss_dssp TTTTEEEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEET----TTTEEEEEEEC---SSSEEEEEECTTSSEE
T ss_pred CCCCcEEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEEC----CCCcEEEEecC---CCCCCeEEEcCCCCEE
Confidence 998877666543 3468899999999876555 555 999987 34455555542 5678999999999999
Q ss_pred EEEeC---------------CCcEEEecCCCCC
Q 011256 468 AVGSM---------------DRNLRVFGLPGND 485 (490)
Q Consensus 468 ~s~~~---------------dg~v~iw~~~~~~ 485 (490)
++++. ||.|++||+.+++
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCc
Confidence 88876 5799999997653
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.6e-26 Score=225.97 Aligned_cols=276 Identities=12% Similarity=0.109 Sum_probs=212.3
Q ss_pred CCeEEEEecCCCC-EEEEEe----CCC----cEEEEeC--CCCcEE--EEeccCccCEEEEEEee--------------C
Q 011256 188 PGIVSLDIHYSKD-VIATGG----VDT----NAVLFDR--PSGQIV--TTLSGHSKKVTSVKFVT--------------E 240 (490)
Q Consensus 188 ~~I~~~~~~~~~~-~l~~~~----~dg----~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~~~--------------~ 240 (490)
..+...+|.+.|. ++++|+ .+| .|++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3567778888765 666776 467 8999999 888877 45888988888877765 1
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCeEEEE
Q 011256 241 GDLFLTGSAD------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQ 311 (490)
Q Consensus 241 ~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~ 311 (490)
+..++.++.+ +.|++||+.. .....+..|...|.+++|+|+|++|++++.++ .|++||+.+++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g----~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS----CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC----CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 5566666554 7999999975 34566778999999999999999999999885 999999999887543
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEE-EEcCCCc--EEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C--
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEAL--VKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-- 385 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-- 385 (490)
. .+...+.+++|+|||+.|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+|++|++++.+ +
T Consensus 219 ~------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 219 A------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp E------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred e------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence 2 2236789999999999777 6666654 99999988775 5666788899999999999999888863 3
Q ss_pred -EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCCCCcceEEEE
Q 011256 386 -VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGTGKATCVK 459 (490)
Q Consensus 386 -i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 459 (490)
|++||+.+++.. .+..+ ...+.+++|+|+|++|++++.+ +.+|++. .... ..+..+ ..+.+++
T Consensus 292 ~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~----~~~~-~~l~~~---~~~~~~~ 360 (415)
T 2hqs_A 292 QVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA----TGGV-QVLSST---FLDETPS 360 (415)
T ss_dssp EEEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT----TCCE-EECCCS---SSCEEEE
T ss_pred EEEEEECCCCCEE-EEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECC----CCCE-EEecCC---CCcCCeE
Confidence 778898877643 23222 4578899999999999988753 6677762 2222 233332 2789999
Q ss_pred EcCCCCeEEEEeCCC---cEEEecCCCCC
Q 011256 460 FGPDAKYIAVGSMDR---NLRVFGLPGND 485 (490)
Q Consensus 460 ~s~~~~~l~s~~~dg---~v~iw~~~~~~ 485 (490)
|+|||++|++++.++ .|++|++.++.
T Consensus 361 ~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred EcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 999999999988877 79999987653
No 128
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.6e-24 Score=205.32 Aligned_cols=276 Identities=13% Similarity=0.164 Sum_probs=199.6
Q ss_pred EecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC-CCcEEEEeCCCCCccce-eeee
Q 011256 194 DIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDGNYDC-KHTL 270 (490)
Q Consensus 194 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~-~~~~ 270 (490)
.|.++++ .+++++.++.|.+||..+++.+..+..+...+ +++|+|+|+++++++. ++.|.+||..++ .. ...+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~---~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE---PPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS---SCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC---ceeEEec
Confidence 3555555 57778889999999999999988887776677 9999999996666655 899999999876 33 5555
Q ss_pred cccccceEEEEEecCCCEEEEEECCC---eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE-EEcCCCc-E
Q 011256 271 KDHTAEVQAVTVHATNKYFVTASLDN---TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEAL-V 345 (490)
Q Consensus 271 ~~h~~~v~~l~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~-i 345 (490)
..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+... ....+++|+|+|++++ ++..++. |
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP------YDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC------TTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC------CCccceEECCCCCEEEEEecCCCceE
Confidence 55666666699999999999555553 8999999999988776532 4568999999997554 4556688 9
Q ss_pred EEEECCCCcee----eeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcc---eeeeecCCCCCCeeEEEEcC
Q 011256 346 KIWDVKSQANV----AKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN---FRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 346 ~iwd~~~~~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~---~~~~~~~~~~~~i~~i~~s~ 416 (490)
.+|++.....+ .........+..++|+|+|+++++++. ++ |.+||+.+++. +..+.. ...+..++|+|
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~sp 230 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSR 230 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECT
T ss_pred EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECC
Confidence 99998764332 112233456899999999997766664 45 99999998887 666654 45678899999
Q ss_pred CCCEEEEEecC---eEEEEEeecCCcceEeeeecCC--CCC---cceEEEEEcCCCCeEEEEeC-CCcEEEecCCCC
Q 011256 417 SGSYLAVASAD---IRVYQVASVKADWNCIKTFPDL--SGT---GKATCVKFGPDAKYIAVGSM-DRNLRVFGLPGN 484 (490)
Q Consensus 417 ~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~ 484 (490)
+|+++++++.. +.+|+... .....+..+... .+. .....++|+|||++|++++. ++.|.+|++...
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLS--GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTT--TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEEcCCCEEEEEECCC--CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 99988877654 77777632 112113222211 011 12356899999998866554 569999999764
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.9e-25 Score=225.17 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=221.7
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeC--CCCCccceeeeec
Q 011256 194 DIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQG--SEDGNYDCKHTLK 271 (490)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~~ 271 (490)
.|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .+. +++..+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe
Confidence 3889999999999999999999999999999984333 899999999999999999999999999 554 5666666
Q ss_pred ccccceEEEEEec----CCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCC-----CCC-CCceEEEEcCCC-cEEEEE
Q 011256 272 DHTAEVQAVTVHA----TNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTD-----GRP-EGYTSAAFHPDG-LILGTG 339 (490)
Q Consensus 272 ~h~~~v~~l~~~~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~-----~~~-~~v~~~~~~~~~-~~l~~g 339 (490)
+...+..++|+| +|+++++++. +++|.+||..+++.+..+...... .|. ..+.++.++|++ .++++.
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 455689999999 9999999885 899999999999998887642110 012 368899999976 456677
Q ss_pred cCCCcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcceeeeecCC--CCCCeeEEE
Q 011256 340 TSEALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSD--SETPTNSVD 413 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~--~~~~i~~i~ 413 (490)
..++.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++. ++ |.+||+.+++....+.... +......+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 788999999998865543 333 4567889999999998877664 44 9999999999888776532 12222333
Q ss_pred EcCC-CCEEEEEe-cC--eEEEEEeecC---CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe-------CCCcEEEe
Q 011256 414 FDHS-GSYLAVAS-AD--IRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-------MDRNLRVF 479 (490)
Q Consensus 414 ~s~~-~~~l~~~~-~d--i~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg~v~iw 479 (490)
++|+ +.++++++ .+ |.||+++... ..|+++.++..+ .+.+..++|+|+|++|++++ .+++|.||
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEE
Confidence 4677 66666664 33 9999985421 128888888876 55678899999999999987 37899999
Q ss_pred cCCCCCCC
Q 011256 480 GLPGNDAP 487 (490)
Q Consensus 480 ~~~~~~~~ 487 (490)
|+.+.+..
T Consensus 455 d~~~~~~~ 462 (543)
T 1nir_A 455 DLKNLDAK 462 (543)
T ss_dssp ETTCTTSC
T ss_pred ECCCCCCC
Confidence 99877643
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9e-25 Score=220.26 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=216.5
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeC--CCCcEEEEeccCccCEEEEEEee----CCCEEEEEeC-CCcEEEEeCCCCC
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDR--PSGQIVTTLSGHSKKVTSVKFVT----EGDLFLTGSA-DKTVRVWQGSEDG 262 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~s~-dg~i~iwd~~~~~ 262 (490)
+.+++|+|+|++|++++.|+.|.+||+ .+++.+.++.. ...+..++|+| +|++|++++. +++|.+||..+.
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~- 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL- 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-
Confidence 889999999999999999999999999 88888888884 45679999999 9999998884 899999998876
Q ss_pred ccceeeeecc----------cc-cceEEEEEecCCCE-EEEEECCCeEEEEeCCCCeEEE--EeecCCCCCCCCCceEEE
Q 011256 263 NYDCKHTLKD----------HT-AEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLT--QVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 263 ~~~~~~~~~~----------h~-~~v~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~ 328 (490)
+++..+.. |. ..+.++.++|++.. +++...++.|.+||+.+...+. .+. +...+..+.
T Consensus 259 --~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~------~~~~~~~~~ 330 (543)
T 1nir_A 259 --EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG------AAPFLHDGG 330 (543)
T ss_dssp --CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE------CCSSCCCEE
T ss_pred --ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec------cCcCccCce
Confidence 55555543 22 37899999997764 5566778999999998865443 222 125577899
Q ss_pred EcCCCcEEEEE-cCCCcEEEEECCCCceeeeecC----CCCCeEEEEEcCC-CCEEEEEe-CCC-EEEEECCC-------
Q 011256 329 FHPDGLILGTG-TSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSEN-GYYLATAA-HDG-VKLWDLRK------- 393 (490)
Q Consensus 329 ~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~-~~~l~~~~-~d~-i~iwd~~~------- 393 (490)
|+|+|++|+++ ..++.|.+||+.+++++..+.. |.+....+ ++|+ |.+++++. .++ |.+||+.+
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 99999976654 5688999999999998888764 54434443 4676 66666665 345 99999988
Q ss_pred CcceeeeecCCCCCCeeEEEEcCCCCEEEEEe--------cC-eEEEEEeecCCcceEeee--ec-CCCCCcceEEEEEc
Q 011256 394 LKNFRSFESSDSETPTNSVDFDHSGSYLAVAS--------AD-IRVYQVASVKADWNCIKT--FP-DLSGTGKATCVKFG 461 (490)
Q Consensus 394 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~--------~d-i~v~~~~~~~~~~~~~~~--~~-~~~~~~~v~~~~~s 461 (490)
.+.+..+..+ ...+..+.++|+|++|++++ .+ |.||++.+.......+.. .. ...+...+..+.|+
T Consensus 410 ~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 487 (543)
T 1nir_A 410 WKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN 487 (543)
T ss_dssp TSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEEC
T ss_pred CeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCC
Confidence 7888888876 45678899999999999987 33 999998554432222211 00 01235689999999
Q ss_pred CCCCeEEEEe-----CCCcEEEecCCCCC
Q 011256 462 PDAKYIAVGS-----MDRNLRVFGLPGND 485 (490)
Q Consensus 462 ~~~~~l~s~~-----~dg~v~iw~~~~~~ 485 (490)
|+|+.|+++. .|+.|.|||..+.+
T Consensus 488 ~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 488 KRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp SSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 9999988763 47999999998754
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3.3e-25 Score=233.52 Aligned_cols=286 Identities=11% Similarity=0.095 Sum_probs=215.5
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CC-----cEEEEeCCCCcEEEEeccCcc------------------------CEEEEE
Q 011256 187 KPGIVSLDIHYSKDVIATGGV-DT-----NAVLFDRPSGQIVTTLSGHSK------------------------KVTSVK 236 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~l~ 236 (490)
...|.+++|+|+|++|++++. || .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 899999999988777765443 378999
Q ss_pred EeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCC
Q 011256 237 FVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 237 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 316 (490)
|+|||++|++++. +.|.+||+.++.. .....+..|...+.+++|+|+|++|++++. +.|++||+.++..........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc
Confidence 9999999999887 9999999987410 034456677888999999999999999874 699999999987654432210
Q ss_pred CC---CC--------CCCceEEEEcCCCcEEEEEcCCC---------------------------------cEEEEECCC
Q 011256 317 TD---GR--------PEGYTSAAFHPDGLILGTGTSEA---------------------------------LVKIWDVKS 352 (490)
Q Consensus 317 ~~---~~--------~~~v~~~~~~~~~~~l~~g~~dg---------------------------------~i~iwd~~~ 352 (490)
.. +. ...+.++.|+|||+.|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 00 00 01147899999999999887665 789999988
Q ss_pred -Cceeeeec--CCCCCeEEEEEcCCCCEEEEEeC-----CC-EEEEECCCCcceeeeecCCCCC---CeeEEEEcCCCCE
Q 011256 353 -QANVAKFD--GHVGAVTAISFSENGYYLATAAH-----DG-VKLWDLRKLKNFRSFESSDSET---PTNSVDFDHSGSY 420 (490)
Q Consensus 353 -~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~-----d~-i~iwd~~~~~~~~~~~~~~~~~---~i~~i~~s~~~~~ 420 (490)
++...... .|...+..++| |||++|++++. +. |++||+.+++....+..+. .. .+..+.|+|+|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeE
Confidence 77654433 36678999999 99999987754 23 9999999988766655432 11 4568999999998
Q ss_pred EEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEE-EEcCCCCeEEE-EeCCC--cEEEecCCC
Q 011256 421 LAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCV-KFGPDAKYIAV-GSMDR--NLRVFGLPG 483 (490)
Q Consensus 421 l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~v~iw~~~~ 483 (490)
+++++.+ .+||.++... . ...+..+ ...|..+ .|+|+|+.|+. ++.++ .++||+++.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~---~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKG---K-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEECTTSSCEEEEECSSS---C-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEEecCCCccEEEEEcCCC---C-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 8888776 7899885322 2 3444443 5567777 59999997755 45555 899998864
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.1e-24 Score=207.04 Aligned_cols=271 Identities=13% Similarity=0.187 Sum_probs=192.0
Q ss_pred EEEEEeCCCcEEEEeCC-CCc--EEEEeccCccCEEEEEEeeCCCEEEEEeCC-CcEEEEeCCCC-Cccceeeeeccccc
Q 011256 201 VIATGGVDTNAVLFDRP-SGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSAD-KTVRVWQGSED-GNYDCKHTLKDHTA 275 (490)
Q Consensus 201 ~l~~~~~dg~i~iwd~~-~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g~i~iwd~~~~-~~~~~~~~~~~h~~ 275 (490)
++++++.|+.|++|++. ++. .+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++... +....+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 44455789999999985 332 33333 467789999999999988888876 99999999721 2233444444443
Q ss_pred ceEEEEEecCCCEEEEEEC-CCeEEEEeCCCC---eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEEEC
Q 011256 276 EVQAVTVHATNKYFVTASL-DNTWCFYDLSSG---ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDV 350 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~ 350 (490)
.+.+++|+|+++++++++. ++.|.+||+..+ .....+.. ...+.+++|+|+++.+++++ .++.|.+||+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG------LDGCHSANISPDNRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC------CCCceEEEECCCCCEEEEecCCCCEEEEEEe
Confidence 7899999999998877765 889999999533 33333321 14588899999998777776 8899999999
Q ss_pred CC-Cceee----eecC-CCCCeEEEEEcCCCCEEEEEe-CCC-EEEEECCC--Ccc--eeeeecC----CCCCCeeEEEE
Q 011256 351 KS-QANVA----KFDG-HVGAVTAISFSENGYYLATAA-HDG-VKLWDLRK--LKN--FRSFESS----DSETPTNSVDF 414 (490)
Q Consensus 351 ~~-~~~~~----~~~~-~~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~--~~~--~~~~~~~----~~~~~i~~i~~ 414 (490)
.+ ++... .+.. ....+.+++|+|+|.++++++ .++ |.+||+.. +.. ...+... .....+..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~ 238 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI 238 (343)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence 87 54432 2222 334788999999999877665 455 99999954 322 2222211 11235668999
Q ss_pred cCCCCEEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe-CCCcEEEecCC
Q 011256 415 DHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRVFGLP 482 (490)
Q Consensus 415 s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~ 482 (490)
+|+|++|+++.. + +.+|++.........+..+... ..+.+++|+|+|++|++++ .++.|.+|+++
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999998886653 3 9999985333344555555442 2378999999999988887 68999999665
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1.3e-23 Score=200.77 Aligned_cols=267 Identities=11% Similarity=0.094 Sum_probs=210.3
Q ss_pred CCeEEEEecCCCCEEEEEeC-------CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEE-EEeCCCcEEEEeCC
Q 011256 188 PGIVSLDIHYSKDVIATGGV-------DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGS 259 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~ 259 (490)
..+..++|+|+++++++++. ++.|.+||..+++.+..+... ..+..++|+|+|++++ ++..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 46789999999998887774 568999999999988887743 4478899999999554 55567999999998
Q ss_pred CCCccceeeeeccccc---------ceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 260 EDGNYDCKHTLKDHTA---------EVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
++ +....+..+.. .+.+++|+|+++++++++ .++.|.+||+.+++....+... ...+.+++
T Consensus 120 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~ 191 (353)
T 3vgz_A 120 TG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-----GKMSTGLA 191 (353)
T ss_dssp TC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-----CTTCCCCE
T ss_pred CC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-----CCccceEE
Confidence 76 44444443332 278999999999887776 4789999999999988777522 13477899
Q ss_pred EcCCCcEEEEEcCCCcEEEEECCCCceeeeecC----CCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeec
Q 011256 329 FHPDGLILGTGTSEALVKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~ 402 (490)
|+|+|+.+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|.++++++.+ + |.+||+.+++....+..
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 999999999999999999999999988877653 45568899999999988877765 5 99999999988877775
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 403 SDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 403 ~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
.. ...++|+|+|+++++++. + +.+|+. .....+..+.. ...+.+++|+|||++|++++.++
T Consensus 272 ~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 272 PE----SLAVLFNPARNEAYVTHRQAGKVSVIDA----KSYKVVKTFDT---PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SS----CCCEEEETTTTEEEEEETTTTEEEEEET----TTTEEEEEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred CC----CceEEECCCCCEEEEEECCCCeEEEEEC----CCCeEEEEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence 32 256999999998777764 3 888886 44555555544 34679999999999887776653
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=2.1e-24 Score=204.71 Aligned_cols=266 Identities=11% Similarity=0.010 Sum_probs=203.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccCcc--CEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCccceeeeecc----
Q 011256 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSK--KVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHTLKD---- 272 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~---- 272 (490)
+++++++.++.|.+||..+++.+..+..... .+.+++|+|+|+.+ ++++.++.|.+||+.++ +....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEcCCcc
Confidence 4789999999999999999998887763322 47899999999865 55566889999999875 34433331
Q ss_pred -cccceEEEEEecCCCEEEEEE------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE
Q 011256 273 -HTAEVQAVTVHATNKYFVTAS------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG 339 (490)
Q Consensus 273 -h~~~v~~l~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g 339 (490)
|...+.+++|+|+++++++++ .++.|.+||+.+++....+... ..+.+++|+|+|++|+++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------RQITMLAWARDGSKLYGL 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC------SSCCCEEECTTSSCEEEE
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC------CCcceeEECCCCCEEEEe
Confidence 223677899999999998886 5799999999999887776532 457789999999988887
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-------------------------CEEEEECCCC
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-------------------------GVKLWDLRKL 394 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-------------------------~i~iwd~~~~ 394 (490)
++.|.+||+.+++.+..+..+.. ...+.|+|+|..++..+.. .|.+||+.++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred --CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 68899999999988877754431 1123789998877655443 2479999987
Q ss_pred cceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 395 KNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 395 ~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
+.. .+....+...+..++|+|+|++++++...+.+|++ .....+..+.. ...+.+++|+|+|++|++++.++
T Consensus 230 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 230 EMA-MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL----EKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp CEE-EEEEEECSSCEEEEEECTTSSEEEEEESEEEEEET----TTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSS
T ss_pred Cce-EeecCCCCCceeeEEECCCCCEEEEeCCeEEEEEC----CCCcCcceecC---CCceeeEEECCCCCEEEEEcCCC
Confidence 765 33333334567889999999999999544999997 44455555443 34578999999999999999999
Q ss_pred cEEEecCCCCC
Q 011256 475 NLRVFGLPGND 485 (490)
Q Consensus 475 ~v~iw~~~~~~ 485 (490)
.|++|++.+++
T Consensus 302 ~i~v~d~~~~~ 312 (337)
T 1pby_B 302 DLAAYDAETLE 312 (337)
T ss_dssp EEEEEETTTCC
T ss_pred cEEEEECcCCc
Confidence 99999998754
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.4e-23 Score=205.12 Aligned_cols=247 Identities=13% Similarity=0.106 Sum_probs=188.3
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC---cEEEEeCCCCCccceeee
Q 011256 199 KDVIATGGVD------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 199 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~ 269 (490)
+..++.++.+ +.|++||+. +.....+.+|...|.+++|+|+|++|++++.|+ .|++||+.++ +. ..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~~-~~ 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AV-RQ 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CE-EE
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---cE-EE
Confidence 5556555543 799999997 445677778999999999999999999999885 9999999875 33 34
Q ss_pred ecccccceEEEEEecCCCEEE-EEECCCe--EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-CC--
Q 011256 270 LKDHTAEVQAVTVHATNKYFV-TASLDNT--WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-EA-- 343 (490)
Q Consensus 270 ~~~h~~~v~~l~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg-- 343 (490)
+..|...+.+++|+|+|+.|+ +++.++. |++||+.++... .+. .+...+.+++|+|||+.|++++. ++
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-----~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-----DGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-----CCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-----CCCCcccceEECCCCCEEEEEECCCCCc
Confidence 566888999999999999887 6666554 999999988753 222 34467899999999998888776 44
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD---G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
.|++||+.+++. ..+..+...+.+++|+|+|++|++++.+ . |++||+.+++.. .+..+ ..+.+++|+|+|+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~---~~~~~~~~spdg~ 366 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST---FLDETPSLAPNGT 366 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS---SSCEEEEECTTSS
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC---CCcCCeEEcCCCC
Confidence 688889988764 3455566788999999999999888764 3 999999987663 33322 3789999999999
Q ss_pred EEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe
Q 011256 420 YLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 420 ~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 466 (490)
+|++++.+ ..||.++.. ......+..+ .+.|.+++|+|...+
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~---g~~~~~l~~~--~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTD---GRFKARLPAT--DGQVKFPAWSPYLHH 411 (415)
T ss_dssp EEEEEEEETTEEEEEEEETT---SCCEEECCCS--SSEEEEEEECCCCCC
T ss_pred EEEEEEcCCCccEEEEEECC---CCcEEEeeCC--CCCCcCCcccccccc
Confidence 99888765 255554322 3334455554 788999999996543
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=1.1e-24 Score=229.05 Aligned_cols=289 Identities=9% Similarity=0.045 Sum_probs=206.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc---CEEEEEEeeCCCEEEEEeCC---------CcEEEE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTEGDLFLTGSAD---------KTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~s~d---------g~i~iw 256 (490)
.+.+++|+|+|+++++ +.||.|++||+.+++....+.+|.. .|.+++|+|||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999998776 7899999999999988888887765 49999999999999999874 778899
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC----CC---------CCC
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD----GR---------PEG 323 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~---------~~~ 323 (490)
|+.++.. ..+.....|...+..++|+|+|+.|+.++. +.|++||+.++............ ++ ...
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9987532 223333345556889999999999999886 79999999988766544321100 00 013
Q ss_pred ceEEEEcCCCcEEEEEcCCC----------------------------------cEEEEECCCCceeeeecCC------C
Q 011256 324 YTSAAFHPDGLILGTGTSEA----------------------------------LVKIWDVKSQANVAKFDGH------V 363 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~ 363 (490)
+.+++|+|||+.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 37899999999999887543 7999999988765566543 5
Q ss_pred CCeEEEEEcCCCCEEEEEeCC----C-EEEEECCCCcceeeeecCCCCCCe----eEEEEcCCCCEEEEE-e-cC-----
Q 011256 364 GAVTAISFSENGYYLATAAHD----G-VKLWDLRKLKNFRSFESSDSETPT----NSVDFDHSGSYLAVA-S-AD----- 427 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~~~i----~~i~~s~~~~~l~~~-~-~d----- 427 (490)
..+..++|+|||++|++.+.. . |++||+.+++....+.... ...+ ..+.|+|+|+.|+.. + .+
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 678999999999988776532 3 9999999887665543321 2222 378999999977764 3 22
Q ss_pred -eEEEEEe-ecCCcceEeeeecCCCCCcceEE-EEEcCCCCeEEEEeCC---CcEEEecCCC
Q 011256 428 -IRVYQVA-SVKADWNCIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMD---RNLRVFGLPG 483 (490)
Q Consensus 428 -i~v~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~v~iw~~~~ 483 (490)
.+||.++ .......+...+... ...+.. ++|+|||+.|+..+.+ +.+++|+++.
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 3677764 111110012222221 233444 6999999999876655 7899999864
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=9.6e-24 Score=221.12 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=204.5
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC-----CC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-----DG 262 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~ 262 (490)
..|.+++|+|+ ..++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++|++.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g- 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS- 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC-
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC-
Confidence 57999999999 6665553 5999999998876654 44467778999999999999885 679999999987 5
Q ss_pred ccceeeeecccccc--------------eEEEEEecCCCEEEEEE---------------------------------CC
Q 011256 263 NYDCKHTLKDHTAE--------------VQAVTVHATNKYFVTAS---------------------------------LD 295 (490)
Q Consensus 263 ~~~~~~~~~~h~~~--------------v~~l~~~~~~~~l~s~~---------------------------------~d 295 (490)
........+... +.++.|+|+|++|++++ .+
T Consensus 157 --~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 157 --RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp --CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred --CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 233322323332 48899999999999987 44
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-----cEEEEECCCCceeeeec--CCCC---C
Q 011256 296 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVAKFD--GHVG---A 365 (490)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~--~~~~---~ 365 (490)
..|.+||+.++....... ...+...+.+++|+|||+.|++++.++ .|++||+.+++....+. .+.. .
T Consensus 235 ~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 679999999987654332 123446789999999999999877665 89999999984333332 1222 3
Q ss_pred eEEEEEcC--CCCEEEEEeCCC-EEEEECC-CCcceeeeecCCCCCCeeE-EEEcCCCCEEEEEecC-----eEEEEEee
Q 011256 366 VTAISFSE--NGYYLATAAHDG-VKLWDLR-KLKNFRSFESSDSETPTNS-VDFDHSGSYLAVASAD-----IRVYQVAS 435 (490)
Q Consensus 366 i~~l~~s~--~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~i~~-i~~s~~~~~l~~~~~d-----i~v~~~~~ 435 (490)
+.++.|+| +|+++++++.++ ++||++. .+.....+..+ ...+.. +.|+|+|+.|++++.+ ..||.++.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 46789999 999999888887 8888775 45555555433 455666 7999999988776654 48888764
Q ss_pred cCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC----CcEEEecCCCCC
Q 011256 436 VKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD----RNLRVFGLPGND 485 (490)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~ 485 (490)
..... ..+. +...+.+++|+|||++|+.++.+ +.|++|++.++.
T Consensus 390 ~~~~~---~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 390 KGGKT---KDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCCCC---EESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCc---eecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 33222 2222 25568899999999998876544 569999987653
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1.1e-23 Score=206.76 Aligned_cols=290 Identities=13% Similarity=0.093 Sum_probs=198.4
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----------cEEEEe-----ccCccCEEEEEEeeCCCEEE----EE
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSG----------QIVTTL-----SGHSKKVTSVKFVTEGDLFL----TG 247 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~-----~~h~~~v~~l~~~~~~~~l~----s~ 247 (490)
...++.+++++++.++++++.+| +++|+.... ..+... ..+...|.+++|+|+|++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34688999999999999999888 888763210 111111 13567799999999999999 78
Q ss_pred eCCCcEEEEeCCCC--------CccceeeeecccccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC
Q 011256 248 SADKTVRVWQGSED--------GNYDCKHTLKDHTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318 (490)
Q Consensus 248 s~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 318 (490)
+.|++|+|||+.+. ........+.+|...|.+++|+|+ +.+|++++.||+|++||++++.......
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~----- 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL----- 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-----
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-----
Confidence 89999999998653 111234566789999999999998 7899999999999999999986654443
Q ss_pred CCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCC-------CCCeEEEEEcCCCCEEEEEe-CC------
Q 011256 319 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGH-------VGAVTAISFSENGYYLATAA-HD------ 384 (490)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~-~d------ 384 (490)
+|...+.+++|+|+|.+|++|+.||.|++||++ ++....+..+ ...|.+++|++++.++++.+ .+
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 345789999999999999999999999999998 5555555433 23799999999988876543 22
Q ss_pred C-EEEEECCCCcce-----eeeecC-----CCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeee-----
Q 011256 385 G-VKLWDLRKLKNF-----RSFESS-----DSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKT----- 445 (490)
Q Consensus 385 ~-i~iwd~~~~~~~-----~~~~~~-----~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~----- 445 (490)
. +++||+++.... ..+... ....+...+.+-++.+++++++.. +.|+........|.....
T Consensus 269 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~r 348 (434)
T 2oit_A 269 PDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSR 348 (434)
T ss_dssp CEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGC
T ss_pred CceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEecccccc
Confidence 1 899999865311 111111 112233334444777888888765 666665322222322111
Q ss_pred ----ecCCCCCcceEEEEEc--C-------------CCCeEEEEeCCCcEEEecCCC
Q 011256 446 ----FPDLSGTGKATCVKFG--P-------------DAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 446 ----~~~~~~~~~v~~~~~s--~-------------~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+........+..+++. . -...|.+-+.||.+..|.+-.
T Consensus 349 a~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 349 AELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 1111112233444442 1 124677888999999998754
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.2e-23 Score=195.24 Aligned_cols=253 Identities=11% Similarity=0.154 Sum_probs=184.7
Q ss_pred EEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC-CCccceeeeeccc-ccceEEEE
Q 011256 204 TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE-DGNYDCKHTLKDH-TAEVQAVT 281 (490)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~h-~~~v~~l~ 281 (490)
.++.|+.|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ + ........+ ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---SPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---SCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---CceEeccccccccccceE
Confidence 3467899999999888766 4455888999999999999999987 78999999987 5 344444444 46789999
Q ss_pred EecCCCEEEEEEC--CC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE-EEcCCCcEEEEECCC-Cce
Q 011256 282 VHATNKYFVTASL--DN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEALVKIWDVKS-QAN 355 (490)
Q Consensus 282 ~~~~~~~l~s~~~--dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~-~~~ 355 (490)
|+|++++|++++. ++ .|..|++.++.. ..+... ..+.+++|+|+++.|+ ++..++.+.+|++.. +..
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC------CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 9999999999983 33 455555555542 222211 3488899999999777 777889999998632 233
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECC-CCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----
Q 011256 356 VAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----- 427 (490)
Q Consensus 356 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~-~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----- 427 (490)
...+..+...+.+++|+|+|.+|++++. ++ +.+|++. .......+..+ ...+..+.|+|+|++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 4556667789999999999998887764 55 8888876 34444444433 4678899999999999888753
Q ss_pred --------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCC
Q 011256 428 --------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 428 --------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
+.+|++.. .....+..+..+ ...+.+++|+|+|++|++++.+.
T Consensus 243 ~~~~~~~~l~~~d~~~--~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDG--GNVETLFDLFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CCSSEEEEEEEEETTS--CSCEEEEEEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccccCceEEEEEecCC--CCceeeeccCCC--CcccccceECCCCCEEEEEEecc
Confidence 66666532 223334433333 56788899999999998887654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=5.4e-23 Score=195.46 Aligned_cols=270 Identities=15% Similarity=0.216 Sum_probs=188.6
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC-CcEEEEeCC--CCc--EEEEeccCccCEEEEEEeeCCCEEEEEeC-CCcEEEEeCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVD-TNAVLFDRP--SGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGS 259 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~ 259 (490)
|...+.+++|+|++++|++++.+ +.|.+|++. ++. .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 45678899999999988888876 999999987 554 344555444 7899999999998776664 8899999995
Q ss_pred CCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCC-CeEEEEe--ecCCCCCCCCCceEEEEcCCCcE
Q 011256 260 EDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSS-GICLTQV--SDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 260 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
.+........+.. ...+.+++|+|+++++++++ .++.|.+||+.+ +...... ... . .....+.+++|+|++.+
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 115 DGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-T-VEGAGPRHMVFHPNEQY 191 (343)
T ss_dssp TTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-C-STTCCEEEEEECTTSSE
T ss_pred CCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-c-CCCCCcceEEECCCCCE
Confidence 3222234444443 34588999999999888887 899999999987 5443221 111 0 11246788999999986
Q ss_pred EEE-EcCCCcEEEEECCC--Cce--eeeec---CC---CCCeEEEEEcCCCCEEEEEe-CCC-EEEEECCC----Cccee
Q 011256 336 LGT-GTSEALVKIWDVKS--QAN--VAKFD---GH---VGAVTAISFSENGYYLATAA-HDG-VKLWDLRK----LKNFR 398 (490)
Q Consensus 336 l~~-g~~dg~i~iwd~~~--~~~--~~~~~---~~---~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~----~~~~~ 398 (490)
+++ +..++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++. .++ |.+||+.. .+.+.
T Consensus 192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence 654 45889999999953 332 22222 11 23577899999998887655 456 99999983 23344
Q ss_pred eeecCCCCCCeeEEEEcCCCCEEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC
Q 011256 399 SFESSDSETPTNSVDFDHSGSYLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 465 (490)
Q Consensus 399 ~~~~~~~~~~i~~i~~s~~~~~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 465 (490)
.+... ..+..++|+|+|++|++++. + +.+|+++........+..+.. .....+++|.++.+
T Consensus 272 ~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~---g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 272 FQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV---GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC---SSSCCEEEEEEEC-
T ss_pred eecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc---CCCCeeEEEEcccC
Confidence 44432 33889999999999998884 3 999988654444555555543 23456777876543
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=4.6e-22 Score=189.79 Aligned_cols=270 Identities=11% Similarity=0.134 Sum_probs=183.3
Q ss_pred CCcEEEEeC--CCCcEEE-EeccCccCEEEEEEeeCCCEEEEEeC---CCcEEEEeCCCCCccceeeeecccccceEEEE
Q 011256 208 DTNAVLFDR--PSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVT 281 (490)
Q Consensus 208 dg~i~iwd~--~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 281 (490)
++.|.+|++ .+++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++ ....+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEE
Confidence 455777654 4555433 2334556678899999999 555544 689999999653 2334555556777899999
Q ss_pred EecCCCEEEEEE-CCCeEEEEeCCC-Ce--EEEEeecCCCC----CCCCCceEEEEcCCCcEEEEEcCCCcEEEEECC-C
Q 011256 282 VHATNKYFVTAS-LDNTWCFYDLSS-GI--CLTQVSDAGTD----GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVK-S 352 (490)
Q Consensus 282 ~~~~~~~l~s~~-~dg~i~iwd~~~-~~--~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~ 352 (490)
|+|++++|++++ .++.|.+|++.. +. .+..+...... .....+.+++|+|+|++++++..++.|.+||+. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999988888 689999999963 22 23333211110 012347889999999977777778899999998 4
Q ss_pred Ccee--eeecCC-CCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCC--Ccc--eeeeecCCC----CCCeeEEEEcCCCC
Q 011256 353 QANV--AKFDGH-VGAVTAISFSENGYYLATAAHD-G-VKLWDLRK--LKN--FRSFESSDS----ETPTNSVDFDHSGS 419 (490)
Q Consensus 353 ~~~~--~~~~~~-~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~--~~~--~~~~~~~~~----~~~i~~i~~s~~~~ 419 (490)
++.. ..+..+ ...+..++|+|+|+++++++.. + |.+|++.. ++. ...+..... ...+..++|+|+|+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5432 222222 2367889999999977776554 5 99999874 332 222222211 14578899999999
Q ss_pred EEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC-CcEEEecCC
Q 011256 420 YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-RNLRVFGLP 482 (490)
Q Consensus 420 ~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~v~iw~~~ 482 (490)
+|++++. + +.+|+++... ....+..+..+ ...+.+++|+|||++|++++.+ +.|.+|+++
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADG-HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGG-CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCC-cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 8866543 3 9999985321 33445555443 4457899999999998888765 899999664
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.5e-23 Score=219.16 Aligned_cols=277 Identities=11% Similarity=0.070 Sum_probs=204.4
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccce
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
.|.+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|++||+.++ ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g---~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASG---RQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTT---EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCC---CE
Confidence 4789999999999999886 899999998873 44567778888999999999999998874 68999999875 33
Q ss_pred eeeecccccc----------------eEEEEEecCCCEEEEEECCC---------------------------------e
Q 011256 267 KHTLKDHTAE----------------VQAVTVHATNKYFVTASLDN---------------------------------T 297 (490)
Q Consensus 267 ~~~~~~h~~~----------------v~~l~~~~~~~~l~s~~~dg---------------------------------~ 297 (490)
......+... +.++.|+|+|++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 3333333322 47899999999999988765 7
Q ss_pred EEEEeCCC-CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-----CCcEEEEECCCCceeeeecCCCC----CeE
Q 011256 298 WCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----EALVKIWDVKSQANVAKFDGHVG----AVT 367 (490)
Q Consensus 298 i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~ 367 (490)
|.+||+.+ ++....... ..+...+..++| |||+.|++++. ++.|++||+.+++....+..+.. .+.
T Consensus 265 l~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLG---KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEECSSTTCCCEEECCC---SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCCceEEecCC---CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 89999988 775443321 134567899999 99999887653 56899999999987766654433 456
Q ss_pred EEEEcCCCCEEEEEeCCC-EEEEECC-CCcceeeeecCCCCCCeeEE-EEcCCCCEEEEEec-C----eEEEEEeecCCc
Q 011256 368 AISFSENGYYLATAAHDG-VKLWDLR-KLKNFRSFESSDSETPTNSV-DFDHSGSYLAVASA-D----IRVYQVASVKAD 439 (490)
Q Consensus 368 ~l~~s~~~~~l~~~~~d~-i~iwd~~-~~~~~~~~~~~~~~~~i~~i-~~s~~~~~l~~~~~-d----i~v~~~~~~~~~ 439 (490)
.++|+|||+++++++.++ +.||.+. .+. ...+..+ ...+..+ .|+|+|+.|++.+. + ++||.++....
T Consensus 341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~- 416 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG- 416 (741)
T ss_dssp CCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC-
T ss_pred ceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-
Confidence 899999999888888887 7777665 233 4444433 5567776 59999998765544 2 78999854222
Q ss_pred ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC----CcEEEecCCC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD----RNLRVFGLPG 483 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 483 (490)
....+.. ...+.+++|+|||++|+....+ +.+.+|+..+
T Consensus 417 --~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 417 --QPQRLSK---APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp --CCEECCC---SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred --Ceeeccc---CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 2223322 4457899999999998876544 4688888754
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=3.3e-23 Score=192.26 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=178.0
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeccC-ccCEEEEEEeeCCCEEEEEe--CCCcEEEEeCCC
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGH-SKKVTSVKFVTEGDLFLTGS--ADKTVRVWQGSE 260 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~ 260 (490)
.|...|.+++|+|++++|++++ ++.|++||+.+ ++......+| ...|.+++|+|++++|++++ .++.+.||.++.
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 3577899999999999999986 78999999998 8777766666 36789999999999999998 445566665533
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEE-EEECCCeEEEEeC--CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDL--SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.. .....+..+ ..+.+++|+|++++|+ +++.++.+.+|++ .++.. ..+. .+...+.+++|+|++..|+
T Consensus 118 ~~--~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-----~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 118 TG--GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-----HGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp TC--CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-----CSSSCEEEEEECTTSSEEE
T ss_pred CC--CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-----cCCCccccceECCCCCEEE
Confidence 21 123333333 3489999999999877 7788999999985 34433 2222 2346789999999999877
Q ss_pred EEc-CCCcEEEEECC-CCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-----------C-EEEEECCCCcceeeeecC
Q 011256 338 TGT-SEALVKIWDVK-SQANVAKFDGHVGAVTAISFSENGYYLATAAHD-----------G-VKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 338 ~g~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----------~-i~iwd~~~~~~~~~~~~~ 403 (490)
+++ .++.+.+|++. .+..+..+..+...+.++.|+|+|++|++++.+ . |.+||+.+++........
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 268 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF 268 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence 665 58899999986 556667777788889999999999999887764 3 999999987664444322
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC
Q 011256 404 DSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
.+...+.++.|+|++++|++++.+
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCcccccceECCCCCEEEEEEec
Confidence 235678899999999999988765
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.8e-22 Score=220.15 Aligned_cols=277 Identities=13% Similarity=0.048 Sum_probs=212.9
Q ss_pred CCCeEEEEec-CCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc-CEEEEEEeeCCCEEEEEeCCCcEE-EEeCCCCCc
Q 011256 187 KPGIVSLDIH-YSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFLTGSADKTVR-VWQGSEDGN 263 (490)
Q Consensus 187 ~~~I~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~-iwd~~~~~~ 263 (490)
...+.+++|+ |+|+.|++++ ++.|++|+...+... .+..|.. .+.+++|+ +|+.|++++.++.+. +|++.++
T Consensus 295 ~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-- 369 (1045)
T 1k32_A 295 IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-- 369 (1045)
T ss_dssp CGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--
T ss_pred ccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--
Confidence 3468999999 9999998887 789999999877654 4666777 89999999 999999999888888 8998764
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
. ...+.+|...+..++|+|+|++|++++.++.|++||+.+++...... +|...+.+++|+|||++|++++.++
T Consensus 370 -~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 370 -K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----SREAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp -C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred -C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----CCCCCccceEECCCCCeEEEEecCc
Confidence 2 23344788899999999999999999999999999999998766653 2346788999999999998877644
Q ss_pred ----------cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc----------------
Q 011256 344 ----------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN---------------- 396 (490)
Q Consensus 344 ----------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~---------------- 396 (490)
.|++||+.+++ +..+..|...+..++|+|+|++|++++.++ ..+|+......
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG 521 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred cccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCC
Confidence 89999999887 667777888899999999999999988765 66676432211
Q ss_pred -------------------------eeeeecCCCCCCeeEEEEcCCCCEEEEE-----------ec--CeEEEEEeecCC
Q 011256 397 -------------------------FRSFESSDSETPTNSVDFDHSGSYLAVA-----------SA--DIRVYQVASVKA 438 (490)
Q Consensus 397 -------------------------~~~~~~~~~~~~i~~i~~s~~~~~l~~~-----------~~--di~v~~~~~~~~ 438 (490)
........+...+..+.++|+|.++++. +. ...+|.++....
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0001111124567899999999877751 11 256665544333
Q ss_pred cceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 439 DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 439 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
... .+. ..+.+++|||||++|++++.+ .|++|++..+.
T Consensus 602 ~~~---~l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 602 KVT---EVK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CEE---EEE-----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cEE---Eee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 222 221 467889999999999999866 89999997765
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=5.6e-22 Score=216.28 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=214.8
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
..|...+.++.|+++ .++++++.+|.+.||.+.. +.....+..|. .+..++|+|+|+.|+++. ++.|.+|++...
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~- 275 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE- 275 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-
Confidence 578889999999987 6777888889999997643 44455666565 467789999999888874 899999998432
Q ss_pred ccceeeeecc-----------cccceEEEEEe-cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCC-CceEEEE
Q 011256 263 NYDCKHTLKD-----------HTAEVQAVTVH-ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPE-GYTSAAF 329 (490)
Q Consensus 263 ~~~~~~~~~~-----------h~~~v~~l~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 329 (490)
.+..+.. |...+.+++|+ |+|+++++++ ++.|.+|++..+.... +. .+.. .+..++|
T Consensus 276 ---~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~~ 345 (1045)
T 1k32_A 276 ---KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----EPLRIRYVRRGG 345 (1045)
T ss_dssp ---CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----CCSCEEEEEECS
T ss_pred ---EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----CCCcceEEeeeE
Confidence 2223433 44578999999 9999999888 7899999998877543 21 2334 7889999
Q ss_pred cCCCcEEEEEcCCCcEE-EEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCC
Q 011256 330 HPDGLILGTGTSEALVK-IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
+ ||..|++++.++.+. +||+.+++... +.+|...+..++|+|+|++|++++.++ |++||+.+++.......+ ..
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~--~~ 421 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR--EA 421 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC--CC
Confidence 9 999999988888898 99998776544 347778999999999999999999997 999999988876665443 56
Q ss_pred CeeEEEEcCCCCEEEEEec------------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 408 PTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
.+.+++|+|+|++|++++. .+.+|++. ... ...+..+ ...+.+++|+|||++|++++.++.
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~--~~~~~~~~~spdG~~l~~~s~~~~ 494 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTE--NSHDYAPAFDADSKNLYYLSYRSL 494 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCS--SSBEEEEEECTTSCEEEEEESCCC
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCC--CcccCCceEcCCCCEEEEEecccC
Confidence 7899999999999988754 27888762 233 3444443 567888999999999999999888
Q ss_pred EEEecCC
Q 011256 476 LRVFGLP 482 (490)
Q Consensus 476 v~iw~~~ 482 (490)
..+|+..
T Consensus 495 ~~~~~~~ 501 (1045)
T 1k32_A 495 DPSPDRV 501 (1045)
T ss_dssp CCEECSS
T ss_pred CcCcchh
Confidence 8888754
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.2e-22 Score=205.89 Aligned_cols=267 Identities=13% Similarity=0.058 Sum_probs=195.0
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcEEEEeccCc-cCEEEEEEeeCCCEEEEEeC---CCcEEEEeCCC-
Q 011256 187 KPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSA---DKTVRVWQGSE- 260 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~---dg~i~iwd~~~- 260 (490)
..+|.+++|+|||+.||+++. ||++.||++..++. ..+..|. ..+.++.|+|| +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 347999999999999998877 99999999865554 4555555 68999999999 77777775 45566765543
Q ss_pred -CCccceeeeecccccceEEEEEecCCCE-EEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE
Q 011256 261 -DGNYDCKHTLKDHTAEVQAVTVHATNKY-FVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT 338 (490)
Q Consensus 261 -~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 338 (490)
.+... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++........ . .+++|+|||++|++
T Consensus 99 ~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 99 RPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP------G--FGFVSDIRGDLIAG 166 (582)
T ss_dssp STTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES------S--CEEEEEEETTEEEE
T ss_pred CCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC------C--ceEEECCCCCEEEE
Confidence 32212 22222 23446688888853 334444455569999998766554321 2 78999999999998
Q ss_pred EcCC----CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC---EEEEECCCCcceeeeecCCCCCCeeE
Q 011256 339 GTSE----ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 339 g~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
++.+ +.|++||+.+++.. .+..+.+.+..++|+|||++|+++..++ |++||+.+++.. .+..+ ...+..
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 7776 78999999888755 6677888899999999999999777775 999999987766 43332 445555
Q ss_pred EE--------EcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc---EEE
Q 011256 412 VD--------FDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN---LRV 478 (490)
Q Consensus 412 i~--------~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---v~i 478 (490)
+. |+|+|.++++++.+ +++|.+ ..... . ..+.+.+++|+ +++++++++.+.. |++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~------g~~~~---~--~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID------GERVE---A--PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET------TEEEC---C--CSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE------CCeec---c--CCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence 66 99999888888777 888986 22222 1 24578899999 9999998887754 777
Q ss_pred ecCCC
Q 011256 479 FGLPG 483 (490)
Q Consensus 479 w~~~~ 483 (490)
|+..+
T Consensus 311 ~d~~~ 315 (582)
T 3o4h_A 311 LPSGE 315 (582)
T ss_dssp ETTCC
T ss_pred EcCCC
Confidence 77653
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.9e-21 Score=184.10 Aligned_cols=240 Identities=9% Similarity=0.082 Sum_probs=175.2
Q ss_pred CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcE-EEEeccCccCEEEEEEeeCCCEEEEEeCCC---cEEEEeCCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGV-DTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGDLFLTGSADK---TVRVWQGSED 261 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~ 261 (490)
...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+..+++|+|+|++|+++..++ .|.+||+.++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 3455 9999999996666555 88999999999887 777777777666699999999988555553 8999999875
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEE-ECCCe-EEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE-EE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNT-WCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GT 338 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 338 (490)
..+..+.. .....+++|+|+|++++++ ..++. |.+|++.....+...... .......+..++|+|+|+++ ++
T Consensus 119 ---~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 119 ---KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp ---EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEE
T ss_pred ---CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEE
Confidence 45555543 3456899999999855554 55688 999998764433211100 00112457899999999855 45
Q ss_pred EcCCCcEEEEECCCCce---eeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcc--eeeeecC--CCC---
Q 011256 339 GTSEALVKIWDVKSQAN---VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKN--FRSFESS--DSE--- 406 (490)
Q Consensus 339 g~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~--~~~~~~~--~~~--- 406 (490)
+..++.|.+||+.+++. +..+..+ ..+..++|+|+|+++++++.+ + |.+||+.+++. +..+... ...
T Consensus 194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 272 (331)
T 3u4y_A 194 NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL 272 (331)
T ss_dssp ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence 55689999999999887 7777643 567899999999988777654 4 99999998776 3333221 001
Q ss_pred CCeeEEEEcCCCCEEEEEecC---eEEEEE
Q 011256 407 TPTNSVDFDHSGSYLAVASAD---IRVYQV 433 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 433 (490)
.....++|+|+|++|++++.+ +.||++
T Consensus 273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 273 FGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp TTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 123568999999999877765 899997
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=5.8e-22 Score=207.60 Aligned_cols=280 Identities=13% Similarity=0.109 Sum_probs=191.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-EEeccCc-----------------cCEEEEEEeeCCCEEEEEeCCC
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-TTLSGHS-----------------KKVTSVKFVTEGDLFLTGSADK 251 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~l~~~~~~~~l~s~s~dg 251 (490)
+..+.|. ++.+++++.+| | +||+.+++.+ ..+..|. ..|.+++|+|+ ..++.+. |+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 3446677 66777777787 8 9999998773 3333333 46999999999 6555553 59
Q ss_pred cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC-----CeEEEEeecCCCC--------
Q 011256 252 TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTD-------- 318 (490)
Q Consensus 252 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~-------- 318 (490)
.|++||+.++ . ...+..+...+.+++|+|+|++|+++ .++.|++||+.+ ++...........
T Consensus 102 ~i~~~d~~~~---~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 102 GLVGFDMLAR---K-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp EEEEEETTTT---E-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred EEEEEECCCC---c-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 9999999874 2 23344566778999999999999985 679999999998 7655433211000
Q ss_pred -CCCCCceEEEEcCCCcEEEEEc---------------------------------CCCcEEEEECCCCceeeeec--CC
Q 011256 319 -GRPEGYTSAAFHPDGLILGTGT---------------------------------SEALVKIWDVKSQANVAKFD--GH 362 (490)
Q Consensus 319 -~~~~~v~~~~~~~~~~~l~~g~---------------------------------~dg~i~iwd~~~~~~~~~~~--~~ 362 (490)
.+...+.++.|+|||++|++++ .+..|++||+.+++...... .+
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 0001257899999999999887 44689999999887654442 45
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcceeeeecCCCC---CCeeEEEEcC--CCCEEEEEecC--eE
Q 011256 363 VGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSE---TPTNSVDFDH--SGSYLAVASAD--IR 429 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~---~~i~~i~~s~--~~~~l~~~~~d--i~ 429 (490)
...+.+++|+|||++|++++.+ .|++||+.+++....+...... ..+..+.|+| +|+++++++.+ ++
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 6779999999999988886643 3999999988433333221111 2346789999 99999888776 89
Q ss_pred EEEEeecCCcceEeeeecCCCCCcceEE-EEEcCCCCeEEEEeCC-C----cEEEecCCCCC
Q 011256 430 VYQVASVKADWNCIKTFPDLSGTGKATC-VKFGPDAKYIAVGSMD-R----NLRVFGLPGND 485 (490)
Q Consensus 430 v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d-g----~v~iw~~~~~~ 485 (490)
||.++. .......+..+ ...+.+ ++|+|+|+.|+.++.+ + .|+.|++.++.
T Consensus 337 l~~~~~---~~~~~~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 337 LYLYDT---TGRLIRQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEEEET---TSCEEEECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEEEC---CCCEEEecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999853 22334444443 455766 7999999987765544 4 56667766543
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=9.6e-21 Score=181.67 Aligned_cols=279 Identities=13% Similarity=0.169 Sum_probs=187.6
Q ss_pred CCEEEEEe----CCCcEEEEeC--CCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC----CcEEEEeCCCC-Ccccee
Q 011256 199 KDVIATGG----VDTNAVLFDR--PSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSED-GNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~----~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~-~~~~~~ 267 (490)
..++++|+ .++.|++|.+ .+++.......+...+..++|+|+|++|++++.+ +.|.+|++... +....+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34555664 3567888865 4555433222266778889999999999999886 79999998764 333444
Q ss_pred eeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEe----ecCC-----CCCCCCCceEEEEcCCCcEEE
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQV----SDAG-----TDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~----~~~~-----~~~~~~~v~~~~~~~~~~~l~ 337 (490)
.....+......+++ +++++++++ .++.|.+|++.....+..+ .... ...+...+.+++|+|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 444445567778887 788777776 5789999999754332211 1000 001123457899999998665
Q ss_pred EE-cCCCcEEEEECCCCce------e-------eeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcc--eee
Q 011256 338 TG-TSEALVKIWDVKSQAN------V-------AKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKN--FRS 399 (490)
Q Consensus 338 ~g-~~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~--~~~ 399 (490)
++ ..++.|.+|++..... + .........+..++|+|+|+++++++. ++ |.+||+.++.. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 54 4588999999875431 1 112234456789999999998888774 45 99999986643 222
Q ss_pred eecC-CCCCCeeEEEEcCCCCEEEEEe-c--C-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe-CC
Q 011256 400 FESS-DSETPTNSVDFDHSGSYLAVAS-A--D-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MD 473 (490)
Q Consensus 400 ~~~~-~~~~~i~~i~~s~~~~~l~~~~-~--d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d 473 (490)
+... .....+..++|+|+|++|+++. . + +.+|+++........+..+.. ...+.+++|+|||++|++++ .+
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTT
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCC
Confidence 2221 1134467999999999987654 3 3 999998643334444444433 34577899999999988887 67
Q ss_pred CcEEEecCC
Q 011256 474 RNLRVFGLP 482 (490)
Q Consensus 474 g~v~iw~~~ 482 (490)
+.|.+|.++
T Consensus 328 ~~v~v~~~d 336 (361)
T 3scy_A 328 NVIQIFERD 336 (361)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEE
Confidence 899997665
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=5.4e-21 Score=182.36 Aligned_cols=245 Identities=13% Similarity=0.140 Sum_probs=172.0
Q ss_pred CCeEEEEecCCCCEEEEEeC---CCcEEEEeCCCCc--EEEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEEeCCCC
Q 011256 188 PGIVSLDIHYSKDVIATGGV---DTNAVLFDRPSGQ--IVTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSED 261 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~ 261 (490)
.....++|+|+|+ |++++. ++.|.+|++.++. .+..+..+...+..++|+|+|++|++++ .++.|.+|++...
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4567899999999 554443 6899999997665 3445455777889999999999888887 6899999999754
Q ss_pred Cccceeeeecc---------cccceEEEEEecCCCEEEEEECCCeEEEEeCC-CCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 262 GNYDCKHTLKD---------HTAEVQAVTVHATNKYFVTASLDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 262 ~~~~~~~~~~~---------h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
+....+..+.. +...+.+++|+|+++++++...++.|.+|++. ++........... ....+..++|+|
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~g~~p~~~~~sp 196 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME--AGFGPRHLVFSP 196 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC--TTCCEEEEEECT
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC--CCCCCceEEECC
Confidence 43344443322 12348899999999966666678899999998 5543322111101 113577899999
Q ss_pred CCcEEEE-EcCCCcEEEEECCC--Cce--eeeecCCC------CCeEEEEEcCCCCEEEEE-eCCC-EEEEECCCC---c
Q 011256 332 DGLILGT-GTSEALVKIWDVKS--QAN--VAKFDGHV------GAVTAISFSENGYYLATA-AHDG-VKLWDLRKL---K 395 (490)
Q Consensus 332 ~~~~l~~-g~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~l~~s~~~~~l~~~-~~d~-i~iwd~~~~---~ 395 (490)
||+++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++ ..++ |.+||+... .
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9995555 56788999999874 432 22332222 358899999999987554 4455 999999732 3
Q ss_pred ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecC
Q 011256 396 NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVK 437 (490)
Q Consensus 396 ~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~ 437 (490)
.+..+... ...+..++|+|+|++|++++.+ +.+|.++...
T Consensus 277 ~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~t 319 (347)
T 3hfq_A 277 LIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTS 319 (347)
T ss_dssp EEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCC
Confidence 33344332 3457899999999999988765 8999886433
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=1.4e-21 Score=186.28 Aligned_cols=277 Identities=11% Similarity=0.021 Sum_probs=188.5
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCc-cCEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCccceeee
Q 011256 192 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~ 269 (490)
.+++++++.++++++.++.|++||..+++.+..+..+. ..+..++|+|+|+++ +++..++.|.+||+.++ +....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEE
Confidence 35678888899999999999999999999888877543 257889999999865 45557899999999875 44444
Q ss_pred ecc-c-----ccceEEEEEecCCCEEEEEECC------------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC
Q 011256 270 LKD-H-----TAEVQAVTVHATNKYFVTASLD------------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP 331 (490)
Q Consensus 270 ~~~-h-----~~~v~~l~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 331 (490)
+.. + ...+.+++|+|+|+++++++.+ +.|.+||+.+++........ .+...+.+++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---PMPRQVYLMRAAD 157 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---ECCSSCCCEEECT
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec---cCCCcccceeECC
Confidence 432 2 2347889999999999998865 89999999875432211110 1124578899999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeeecCCC-C-----------------------CeEEEEEcCCCCEEEEEeCC--C
Q 011256 332 DGLILGTGTSEALVKIWDVKSQANVAKFDGHV-G-----------------------AVTAISFSENGYYLATAAHD--G 385 (490)
Q Consensus 332 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~-----------------------~i~~l~~s~~~~~l~~~~~d--~ 385 (490)
+|+ +++++. .|.+||+.+++.+..+..+. . ...++++++++......... .
T Consensus 158 dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 555543 49999999998877665331 0 23456666554221111001 1
Q ss_pred EEEEECCCCcceeeeecCCCCCCeeEEEEcC-CCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
+..+|..+++. ..+........+..++|+| ++++++++...+.+|++ .....+..+.. ...+.+++|+|+|
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~----~~~~~~~~~~~---~~~~~~~~~s~dg 306 (349)
T 1jmx_B 235 YLSVDLKTGKT-HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL----KQRKLIKAANL---DHTYYCVAFDKKG 306 (349)
T ss_dssp EEEEETTTCCE-EEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEET----TTTEEEEEEEC---SSCCCEEEECSSS
T ss_pred EEEEeccCCcE-EecccccCCCcceeeEecCCCCCEEEEEcCeEEEEEC----ccCeEEEEEcC---CCCccceEECCCC
Confidence 22344444332 1111111245688999999 99999998333999987 44555555443 3356789999999
Q ss_pred CeEEEEeCCCcEEEecCCCCC
Q 011256 465 KYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 465 ~~l~s~~~dg~v~iw~~~~~~ 485 (490)
++|++++.++.|++||+.+.+
T Consensus 307 ~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SCEEEESBSSEEEEEETTTTE
T ss_pred CEEEEecCCCeEEEEeccccc
Confidence 999999899999999997653
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.3e-20 Score=179.85 Aligned_cols=230 Identities=15% Similarity=0.170 Sum_probs=183.9
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccCccC---------EEEEEEeeCCCEEEEEe--CCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKK---------VTSVKFVTEGDLFLTGS--ADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~l~s~s--~dg~i~iw 256 (490)
.+..++|+|++++++ ++..++.|.+||..+++.+..+..+... +.++.|+|+++++++++ .++.|.+|
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 467889999999554 5555799999999999988887765432 78999999999777766 47889999
Q ss_pred eCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
|..+. +....+..+...+.+++|+|+++++++++.++.|.+||+.+++....+... ..++...+..++|+|+++.+
T Consensus 170 d~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 170 DGGNI---KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGKEHFFINISLDTARQRA 245 (353)
T ss_dssp ETTTT---EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSSCCCEEEEEEETTTTEE
T ss_pred cCCCC---ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCCCcccceEEECCCCCEE
Confidence 99875 556666556666889999999999999999999999999999988777642 22234567889999999877
Q ss_pred EEEcC-CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcceeeeecCCCCCCeeEEE
Q 011256 337 GTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNFRSFESSDSETPTNSVD 413 (490)
Q Consensus 337 ~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~ 413 (490)
++++. ++.|.+||+.+++.+..+.... ...++|+|+|++++++.. ++ |.+||+.+++.+..+.. ...+..++
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~ 320 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLA 320 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEE
Confidence 66654 5899999999998888776443 267999999997776664 55 99999999988877765 34679999
Q ss_pred EcCCCCEEEEEecC
Q 011256 414 FDHSGSYLAVASAD 427 (490)
Q Consensus 414 ~s~~~~~l~~~~~d 427 (490)
|+|+|++|+++..+
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999987776644
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=6e-20 Score=176.13 Aligned_cols=264 Identities=13% Similarity=0.155 Sum_probs=179.4
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC----CcEEEEeCCC--CcE--EEEeccCccCEEEEEEeeCCCEEEEEe-CCCcEEEE
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVD----TNAVLFDRPS--GQI--VTTLSGHSKKVTSVKFVTEGDLFLTGS-ADKTVRVW 256 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw 256 (490)
+......++|+|+|++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 45567789999999999988875 7999998765 433 3344445566777887 888777766 58899999
Q ss_pred eCCCCCccceeeeec-----------ccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeE------E------EEe
Q 011256 257 QGSEDGNYDCKHTLK-----------DHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGIC------L------TQV 312 (490)
Q Consensus 257 d~~~~~~~~~~~~~~-----------~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~------~~~ 312 (490)
++...+......... .+...+.+++|+|+|+++++++ .++.|.+|++..... + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997654322221111 1223468899999999776665 478999998875431 1 111
Q ss_pred ecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEEECCCCce--eeee---cCCCCCeEEEEEcCCCCEEEEEeCC--
Q 011256 313 SDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQAN--VAKF---DGHVGAVTAISFSENGYYLATAAHD-- 384 (490)
Q Consensus 313 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~l~~s~~~~~l~~~~~d-- 384 (490)
.. .....+..++|+|||+++++++ .++.|.+||+.+++. +..+ ..+......++|+|+|++|+++..+
T Consensus 206 ~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 206 KV----APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EC----CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred ec----CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 11 1125578999999999777766 689999999987644 2222 2233457899999999999777665
Q ss_pred C-EEEEECC--CCc--ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceE
Q 011256 385 G-VKLWDLR--KLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKAT 456 (490)
Q Consensus 385 ~-i~iwd~~--~~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 456 (490)
+ |.+|++. +++ .+..+.. ...+..++|+|+|++|++++.+ +.+|.++..... ........ +...+.
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~--~~~~~~~~-~~~~p~ 355 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL--LTDIKKDI-KVDKPV 355 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC--EEECSCCE-ECSSEE
T ss_pred CEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc--Eeecceee-eCCCCe
Confidence 4 9999996 333 2333332 3567899999999999998844 999888643322 22211111 234688
Q ss_pred EEEEc
Q 011256 457 CVKFG 461 (490)
Q Consensus 457 ~~~~s 461 (490)
|+.|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88885
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.5e-21 Score=191.45 Aligned_cols=217 Identities=12% Similarity=0.142 Sum_probs=161.9
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC-------Cccceee-----eecccccc
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED-------GNYDCKH-----TLKDHTAE 276 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~-----~~~~h~~~ 276 (490)
+.+++|+.... .....++.+++++++.++++++.|+ +++|+.... ....... ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46788765321 1344578999999999999999988 888874311 0000000 11135668
Q ss_pred eEEEEEecCCCEEE----EEECCCeEEEEeCCCC--------eEEEEeecCCCCCCCCCceEEEEcCC-CcEEEEEcCCC
Q 011256 277 VQAVTVHATNKYFV----TASLDNTWCFYDLSSG--------ICLTQVSDAGTDGRPEGYTSAAFHPD-GLILGTGTSEA 343 (490)
Q Consensus 277 v~~l~~~~~~~~l~----s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg 343 (490)
|.+++|+|++++|+ +++.|+.|++||+.++ +.+..+.. ..+|...|.+++|+|+ +.+|++++.||
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--LKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--CCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--cCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 99999999999999 7888999999998754 22222221 3356789999999997 89999999999
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC-----CCCCeeEEEEcCC
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----SETPTNSVDFDHS 417 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----~~~~i~~i~~s~~ 417 (490)
.|++||++++..+....+|...|++++|+|+|++|++|+.|+ |++||++ ++....+..+. +...+.++.|+++
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence 999999999877777777889999999999999999999998 9999998 44444444332 1237899999999
Q ss_pred CCEEEEEe-cC--------eEEEEEeec
Q 011256 418 GSYLAVAS-AD--------IRVYQVASV 436 (490)
Q Consensus 418 ~~~l~~~~-~d--------i~v~~~~~~ 436 (490)
+.++++.+ .+ +++|++...
T Consensus 252 ~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 252 YVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ceEEEEEccCCCccCCCCceEEEEeccC
Confidence 88886543 21 789998653
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.9e-21 Score=204.26 Aligned_cols=274 Identities=11% Similarity=0.087 Sum_probs=189.2
Q ss_pred CeEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEec---cCccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIATGGVD---------TNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
.|.+++|||||++|++++.+ +.+++||+.+++. ..+. +|...+.+++|+|||+.|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 58999999999999998764 7788999998876 3333 45555889999999999999886 799999
Q ss_pred eCCCCCccceeeeecccccc------------------eEEEEEecCCCEEEEEECCC----------------------
Q 011256 257 QGSEDGNYDCKHTLKDHTAE------------------VQAVTVHATNKYFVTASLDN---------------------- 296 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~------------------v~~l~~~~~~~~l~s~~~dg---------------------- 296 (490)
|+.++ ........+... +.+++|+|+|++|++++.|+
T Consensus 140 ~~~~g---~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 140 AHVGK---QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp SSSSS---CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred ECCCC---ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 99875 333333333332 37899999999999987653
Q ss_pred ------------eEEEEeCCCCeEEEEeecCC-CCCCCCCceEEEEcCCCcEEEEEcC----CCcEEEEECCCCceeeee
Q 011256 297 ------------TWCFYDLSSGICLTQVSDAG-TDGRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQANVAKF 359 (490)
Q Consensus 297 ------------~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~ 359 (490)
.|++||+.++.....+.... ...+...+..++|+|||+++++... +..|++||+.+++....+
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 79999999887544443210 0112356889999999998877643 357999999998876655
Q ss_pred cC-CCCCe----EEEEEcCCCCEEEEE--eCCC-------EEEEEC-CCCcc--eeeeecCCCCCCeeE-EEEcCCCCEE
Q 011256 360 DG-HVGAV----TAISFSENGYYLATA--AHDG-------VKLWDL-RKLKN--FRSFESSDSETPTNS-VDFDHSGSYL 421 (490)
Q Consensus 360 ~~-~~~~i----~~l~~s~~~~~l~~~--~~d~-------i~iwd~-~~~~~--~~~~~~~~~~~~i~~-i~~s~~~~~l 421 (490)
.. +.+.+ ..++|+|||+.|+.. ..++ |.+||+ ..+.. ...+... ...+.. +.|+|+|+.|
T Consensus 297 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 297 EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKI 374 (723)
T ss_dssp EEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEE
T ss_pred EeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEE
Confidence 43 33333 378999999977653 3333 777883 44331 3333321 233444 6899999998
Q ss_pred EEEecC-----eEEEEEeecCCcceEeeeecC-CCCCcceEEEEEcCCCCeEEEEe
Q 011256 422 AVASAD-----IRVYQVASVKADWNCIKTFPD-LSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 422 ~~~~~d-----i~v~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
+..+.+ +++|.++..... ....+.. ..+...+..++|+|||++|+...
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGNF--NRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTTC--CCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EEEEcCCCCcceEEEEEeCCCCC--CcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 766542 889998643211 1112221 01245678999999999888754
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=204.77 Aligned_cols=278 Identities=11% Similarity=0.078 Sum_probs=194.4
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc---CEEEEEEeeCCCEEEEEeC---------CCcEEEEeCC
Q 011256 192 SLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK---KVTSVKFVTEGDLFLTGSA---------DKTVRVWQGS 259 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~s~---------dg~i~iwd~~ 259 (490)
+++|+|+|.++++ +.|+.|++||+.+++....+.+|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965554 4699999999999998877776654 4899999999999998876 7899999998
Q ss_pred CCCcccee--eeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC----CCC---------CCc
Q 011256 260 EDGNYDCK--HTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD----GRP---------EGY 324 (490)
Q Consensus 260 ~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~---------~~v 324 (490)
++ +.+ ..+ ...+..++|+|+|+.|+.+. ++.|++||+.++............ ++. ...
T Consensus 99 ~g---~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NG---EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TT---EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CC---ccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 75 221 222 24688999999999999886 789999999988765432111000 111 112
Q ss_pred eEEEEcCCCcEEEEEcCCC----------------------------------cEEEEECCCCcee--------eeecCC
Q 011256 325 TSAAFHPDGLILGTGTSEA----------------------------------LVKIWDVKSQANV--------AKFDGH 362 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~ 362 (490)
.+++|+|||+.|++++.|. .|++||+.+++.. ..+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 5899999999999887552 7889999887653 123457
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC--C---EEEEE----CCCCcceeeee--cCCCCCCee-----EEEEcCCCCEEEE--E
Q 011256 363 VGAVTAISFSENGYYLATAAHD--G---VKLWD----LRKLKNFRSFE--SSDSETPTN-----SVDFDHSGSYLAV--A 424 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d--~---i~iwd----~~~~~~~~~~~--~~~~~~~i~-----~i~~s~~~~~l~~--~ 424 (490)
...+..++|+||++++++.... + |.+|| +.+++....+. ...+...+. .+.|+|+|+.|+. +
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 331 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS 331 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence 7789999999998877774422 1 88999 77776655442 011134444 7899999996655 3
Q ss_pred ecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC-----CcEEEecCCC
Q 011256 425 SAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPG 483 (490)
Q Consensus 425 ~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~ 483 (490)
..+ .+||.++..... ...+..+ ...+..+.++ +++.|+..+.+ +.+++|.++.
T Consensus 332 ~~~g~~~l~~~~~~~~~---~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 332 DKDGYKHIHYIKDTVEN---AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CTTSCEEEEEESSCSTT---CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ccCCceEEEEEECCCCc---eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 233 566665433222 2223322 4457777777 88877776655 7889998764
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2.2e-20 Score=176.93 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=179.5
Q ss_pred CeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEeccC-----ccCEEEEEEeeCCCEEEEEe------------CC
Q 011256 189 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGH-----SKKVTSVKFVTEGDLFLTGS------------AD 250 (490)
Q Consensus 189 ~I~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~s~s------------~d 250 (490)
.+.+++|+|+++.+ +++..++.|.+||+.+++.+..+... ...+.+++|+|+|++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 36789999999865 55566789999999999888766532 22577899999999888886 57
Q ss_pred CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc
Q 011256 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
+.|.+||+.+. +....+.. ...+.+++|+|++++++++ ++.|.+||+.+++....+..... .. .+.|+
T Consensus 115 ~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~---~~---~~~~s 182 (337)
T 1pby_B 115 TRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW---EA---ETYAQ 182 (337)
T ss_dssp CEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT---TT---TTBCC
T ss_pred ceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc---CC---CceeC
Confidence 99999999875 44444443 4567889999999988887 68999999999988776653311 12 22678
Q ss_pred CCCcEEEEEcCCC------------------------cEEEEECCCCcee-eeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 011256 331 PDGLILGTGTSEA------------------------LVKIWDVKSQANV-AKFDGHVGAVTAISFSENGYYLATAAHDG 385 (490)
Q Consensus 331 ~~~~~l~~g~~dg------------------------~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~d~ 385 (490)
|++..+++.+..+ .|.+||+.+++.. ..+..+...+.+++|+|+|++++++ .+.
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~ 261 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNV 261 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESE
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCe
Confidence 9887665544332 4689999988764 2234456678899999999999988 334
Q ss_pred EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec
Q 011256 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 447 (490)
|.+||+.+++....+.. ...+.+++|+|+|++|++++.+ +.+|++ .....+..+.
T Consensus 262 v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~----~~~~~~~~~~ 318 (337)
T 1pby_B 262 LESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA----ETLEKKGQVD 318 (337)
T ss_dssp EEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET----TTCCEEEEEE
T ss_pred EEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC----cCCcEEEEEE
Confidence 99999999888777765 3467899999999999888766 889987 3444444443
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=6.7e-20 Score=177.49 Aligned_cols=276 Identities=13% Similarity=0.054 Sum_probs=184.2
Q ss_pred EEecCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeee
Q 011256 193 LDIHYSKDVIATGGV-DT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 193 ~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 269 (490)
.+|+|||+.|+.++. +| .|.+||+.+++......++...+..+.|+|+|+.|+.++.++.|++||+.++ +....
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g---~~~~~ 117 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL---EENVV 117 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC---CEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC---cceee
Confidence 789999999988887 66 3888999988887777777666667889999999999999999999999886 33333
Q ss_pred ecccccceEEEE--EecCCCEEEEEE----------------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 270 LKDHTAEVQAVT--VHATNKYFVTAS----------------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 270 ~~~h~~~v~~l~--~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
+..+...+.... ++|++.+++... .++.|.+||+.+++....... ...+.
T Consensus 118 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~------~~~~~ 191 (388)
T 3pe7_A 118 YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE------NQWLG 191 (388)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE------SSCEE
T ss_pred eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC------Ccccc
Confidence 444444444333 488998887432 346899999999876544432 25678
Q ss_pred EEEEcC-CCcEEEEEcCC------CcEEEEECCCCceeeeecCCC--CCeEEEEEcCCCCEEEEEeCC----C--EEEEE
Q 011256 326 SAAFHP-DGLILGTGTSE------ALVKIWDVKSQANVAKFDGHV--GAVTAISFSENGYYLATAAHD----G--VKLWD 390 (490)
Q Consensus 326 ~~~~~~-~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~l~~~~~d----~--i~iwd 390 (490)
.+.|+| ||..|+....+ ..|.++|+..+... .+..+. ..+..+.|+|||+.|+..+.. . |++||
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence 999999 99988876653 37888887665443 333333 357889999999977554431 2 99999
Q ss_pred CCCCcceeeeecCCCC---CCeeEEEEcCCCCEEEEEe---------cC--eEEEEEeecCCcceEeeeecCCCC-----
Q 011256 391 LRKLKNFRSFESSDSE---TPTNSVDFDHSGSYLAVAS---------AD--IRVYQVASVKADWNCIKTFPDLSG----- 451 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~---~~i~~i~~s~~~~~l~~~~---------~d--i~v~~~~~~~~~~~~~~~~~~~~~----- 451 (490)
+.+++........... .....+.|+|+|+.|+... .+ +.+|++.. ... ..+..+..
T Consensus 271 ~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~----~~~-~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 271 PETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN----GTQ-HRVARHDTSWKVF 345 (388)
T ss_dssp TTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT----TEE-EEEEECCCCCCCB
T ss_pred cCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC----Cce-EEeccccCccccc
Confidence 9987643322221100 0012237899999887542 22 66666522 221 22222211
Q ss_pred ----CcceEEEEEcCCCCeEEEEe-CCCcEEEecCCC
Q 011256 452 ----TGKATCVKFGPDAKYIAVGS-MDRNLRVFGLPG 483 (490)
Q Consensus 452 ----~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~ 483 (490)
...+.+++|+|||+.|+.++ .+|...||.++-
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 01467889999999887665 477777776543
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=3.7e-20 Score=194.28 Aligned_cols=286 Identities=10% Similarity=0.073 Sum_probs=192.8
Q ss_pred CeEEEEecCCCCEEEEEeC---------CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 189 GIVSLDIHYSKDVIATGGV---------DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
.|.+++|||||++|++++. ++.|++||+.+++.+.... ....+.+++|+|||+.|+++. |+.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4889999999999998876 7899999999887621111 135688999999999999886 7899999998
Q ss_pred CCCccceeee-ecccccce-----------------EEEEEecCCCEEEEEECCC-------------------------
Q 011256 260 EDGNYDCKHT-LKDHTAEV-----------------QAVTVHATNKYFVTASLDN------------------------- 296 (490)
Q Consensus 260 ~~~~~~~~~~-~~~h~~~v-----------------~~l~~~~~~~~l~s~~~dg------------------------- 296 (490)
++. .... ..++...| .+++|+|||++|++++.|.
T Consensus 139 ~g~---~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 139 GDP---PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp TSC---CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred CCC---cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 753 2221 12332222 4899999999999987652
Q ss_pred ---------eEEEEeCCCCeEE--EEeec-CCCCCCCCCceEEEEcCCCcEEEEEcCC----CcEEEEE----CCCCcee
Q 011256 297 ---------TWCFYDLSSGICL--TQVSD-AGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWD----VKSQANV 356 (490)
Q Consensus 297 ---------~i~iwd~~~~~~~--~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd----~~~~~~~ 356 (490)
.|++||+.++... ..+.. ....++...+..++|+||+.++++.... ..|.+|| +.+++..
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~ 295 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP 295 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence 7889999887642 11110 0011345678999999998877774432 2488999 8777766
Q ss_pred eee----cCCCCCeE-----EEEEcCCCCEEEE--EeCCC---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEE
Q 011256 357 AKF----DGHVGAVT-----AISFSENGYYLAT--AAHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 357 ~~~----~~~~~~i~-----~l~~s~~~~~l~~--~~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
..+ .+|.+.+. .+.|+|||+.|+. +..++ |.+||+..++ ...+... ...+..+.++ +++.|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 296 KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLF 371 (719)
T ss_dssp GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEE
T ss_pred EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEE
Confidence 555 46666666 8899999986554 43444 8888887765 3333322 4456777777 777766
Q ss_pred EEecC-------eEEEEEeecCCc--ceEeee-ecCCCCCcceEEEEEcCCCCeEEEE-eCC--CcEEEecCCCCC
Q 011256 423 VASAD-------IRVYQVASVKAD--WNCIKT-FPDLSGTGKATCVKFGPDAKYIAVG-SMD--RNLRVFGLPGND 485 (490)
Q Consensus 423 ~~~~d-------i~v~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~-~~d--g~v~iw~~~~~~ 485 (490)
..+.+ .++|.++..... ..++.. +.. +...+..+.|+|++++++.. +.+ ..+.+|++.+++
T Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~--~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK--ERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTT--TTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEecCCCCCceEEEEEEeCCCCCCCceeccCccCC--CCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 65532 899998652221 122111 111 24567889999999987754 333 468889886553
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=4.2e-19 Score=170.53 Aligned_cols=276 Identities=11% Similarity=0.096 Sum_probs=179.2
Q ss_pred EEEEEeCC--CcEEEEeC--CCCcEEE--Eec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC-CCCccceeeeecc
Q 011256 201 VIATGGVD--TNAVLFDR--PSGQIVT--TLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS-EDGNYDCKHTLKD 272 (490)
Q Consensus 201 ~l~~~~~d--g~i~iwd~--~~~~~~~--~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~ 272 (490)
.+++|+.. +.|.+|++ .+++... ... .....+..++|+|+|++|++++.+ .|.+|++. ++ ........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g---~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT---EIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC---CEEEeeEe
Confidence 35555543 46777664 4555422 221 233467889999999999998887 99999986 43 22222111
Q ss_pred -cccceEEEEEecCCCE--EEEEE-------------CCCeEEEEeCC-CCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 273 -HTAEVQAVTVHATNKY--FVTAS-------------LDNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 273 -h~~~v~~l~~~~~~~~--l~s~~-------------~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
..+.+.+++|+|+|++ +++++ .+|.+.+|++. .+.....+... ...+...+.+++|+|||++
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~spdG~~ 158 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-EYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-ECCTTCCEEEEEECTTSSE
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-EeCCCCcceEEEECCCCCE
Confidence 0123556889999994 44543 68999999997 45544333211 0012256889999999998
Q ss_pred EEEEc-CCCcEEEEECC-CCcee--eeec--CCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECC--CCcce---eeeec
Q 011256 336 LGTGT-SEALVKIWDVK-SQANV--AKFD--GHVGAVTAISFSENGYYLATAAHD-G-VKLWDLR--KLKNF---RSFES 402 (490)
Q Consensus 336 l~~g~-~dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~--~~~~~---~~~~~ 402 (490)
+++++ .++.|++||+. +++.. ..+. .+...+..++|+|+|++|++++.. + |.+|++. +++.. ..+..
T Consensus 159 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 87765 46799999998 67543 2333 235678999999999999888764 4 9999765 34432 12222
Q ss_pred CCCC----C-------CeeEEE-EcCCCCEEEEEec--------CeEEEEEeecCCcceEee-eecCCCCCcceEEEEEc
Q 011256 403 SDSE----T-------PTNSVD-FDHSGSYLAVASA--------DIRVYQVASVKADWNCIK-TFPDLSGTGKATCVKFG 461 (490)
Q Consensus 403 ~~~~----~-------~i~~i~-~s~~~~~l~~~~~--------di~v~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s 461 (490)
.... . .+..++ |+|+|++|++++. .+.+|+++.. .....+. ....+ ...+..++|+
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~--~~~~~~~a~s 315 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTP--TSGGHSNAVS 315 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECS--SCCTTCCCEE
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecC--CCCcccceec
Confidence 1100 1 478899 9999999887642 3889998521 1122111 12211 2345678999
Q ss_pred C---CCCeEEEEeCC-CcEEEecCCCC
Q 011256 462 P---DAKYIAVGSMD-RNLRVFGLPGN 484 (490)
Q Consensus 462 ~---~~~~l~s~~~d-g~v~iw~~~~~ 484 (490)
| ||++|++++.+ +.|.+|+++..
T Consensus 316 p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 316 PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9 89999999865 89999998654
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.1e-18 Score=183.38 Aligned_cols=240 Identities=10% Similarity=0.086 Sum_probs=168.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC-----EEEEEEeeCCCEEEEEeCC---------CcE
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----VTSVKFVTEGDLFLTGSAD---------KTV 253 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~s~s~d---------g~i 253 (490)
....++.|+|+|.+++++ ||.|++||+.+++....+.+|... ...+.|||||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 899999999999988888877643 2347899999999998876 566
Q ss_pred EEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC----CCCC--------
Q 011256 254 RVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT----DGRP-------- 321 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~-------- 321 (490)
.+||+.++ + ...+..|...+...+|+|+|+.|+.+. ++.|++|++.++........... .++.
T Consensus 95 ~~~d~~~~---~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 95 DIYDLNKR---Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEETTTT---E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEECCCC---c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 79999885 2 334566778899999999999998884 68999999988875432211100 0001
Q ss_pred -CCceEEEEcCCCcEEEEEcCCC------------------------------------cEEEEECCC---Cc--eeeee
Q 011256 322 -EGYTSAAFHPDGLILGTGTSEA------------------------------------LVKIWDVKS---QA--NVAKF 359 (490)
Q Consensus 322 -~~v~~~~~~~~~~~l~~g~~dg------------------------------------~i~iwd~~~---~~--~~~~~ 359 (490)
.....+.|+|||+.|+.++.|. .|++||+.+ ++ ....+
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence 1224589999999998874221 588899988 73 22233
Q ss_pred c------CCCCCeEEEEEcCCCCEEEEEeCC----C-EEEEECCCCc----ce--eeeecCCCCCCe-----eEEEEcCC
Q 011256 360 D------GHVGAVTAISFSENGYYLATAAHD----G-VKLWDLRKLK----NF--RSFESSDSETPT-----NSVDFDHS 417 (490)
Q Consensus 360 ~------~~~~~i~~l~~s~~~~~l~~~~~d----~-i~iwd~~~~~----~~--~~~~~~~~~~~i-----~~i~~s~~ 417 (490)
. ++...+..++|+|||++++..... . |.+||+.+++ +. ..+....+...+ ..+.|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 3 367789999999999976654322 2 9999998876 22 222111113333 37889999
Q ss_pred CCEEE-EEecC---eEEEEEe
Q 011256 418 GSYLA-VASAD---IRVYQVA 434 (490)
Q Consensus 418 ~~~l~-~~~~d---i~v~~~~ 434 (490)
|+.|+ ..+.. ..||.++
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEEE
Confidence 99877 66543 4455443
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=3e-18 Score=164.54 Aligned_cols=244 Identities=14% Similarity=0.129 Sum_probs=167.4
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCcEEEEeccC-ccCEEEEEEeeCCCE--EEEEe-------------CC
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRP-SGQIVTTLSGH-SKKVTSVKFVTEGDL--FLTGS-------------AD 250 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~--l~s~s-------------~d 250 (490)
..+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|+|++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 367789999999999988887 99999987 77665433211 123556899999994 45553 68
Q ss_pred CcEEEEeCCCCCccc-eeeeec-ccccceEEEEEecCCCEEEEEEC-CCeEEEEeCC-CCeEEEEeecCCCCCCCCCceE
Q 011256 251 KTVRVWQGSEDGNYD-CKHTLK-DHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLS-SGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 251 g~i~iwd~~~~~~~~-~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
|++.+|++...+... .+..+. .+...+.+++|+|+|+++++++. ++.|.+||+. +++........ ...+...+..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-APDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-CSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-cCCCCCCCCE
Confidence 999999997533211 111111 24567999999999998887764 6899999998 67643221110 1112256889
Q ss_pred EEEcCCCcEEEEEcC-CCcEEEEECC--CCcee---eee---c----CCCC------CeEEEE-EcCCCCEEEEEeC--C
Q 011256 327 AAFHPDGLILGTGTS-EALVKIWDVK--SQANV---AKF---D----GHVG------AVTAIS-FSENGYYLATAAH--D 384 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~-dg~i~iwd~~--~~~~~---~~~---~----~~~~------~i~~l~-~s~~~~~l~~~~~--d 384 (490)
++|+|||+++++++. ++.|.+|++. +++.. ..+ . ++.. .+..++ |+|||++|+++.. +
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~ 277 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK 277 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence 999999998887764 6899999865 45532 112 1 1122 488999 9999998877643 3
Q ss_pred -----CEEEEECC-CCcceee---eecCCCCCCeeEEEEcC---CCCEEEEEecC---eEEEEEee
Q 011256 385 -----GVKLWDLR-KLKNFRS---FESSDSETPTNSVDFDH---SGSYLAVASAD---IRVYQVAS 435 (490)
Q Consensus 385 -----~i~iwd~~-~~~~~~~---~~~~~~~~~i~~i~~s~---~~~~l~~~~~d---i~v~~~~~ 435 (490)
.|.+|++. +++.... .... ...+..++|+| +|++|++++.+ +.||+++.
T Consensus 278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 278 FELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 49999996 4443321 2222 34467789999 89999998764 89999854
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=2.3e-19 Score=183.55 Aligned_cols=229 Identities=13% Similarity=0.076 Sum_probs=159.2
Q ss_pred ccCEEEEEEeeCCCEEEEEeC-CCcEEEEeCCCCCccceeeeecccc-cceEEEEEecCCCEEEEEEC---CCeEEEEeC
Q 011256 229 SKKVTSVKFVTEGDLFLTGSA-DKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASL---DNTWCFYDL 303 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~ 303 (490)
..+|.+++|+|||+.|++++. ||+++||++.++ .. ..+..|. ..+..++|+|+ +.+++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 457999999999999999887 999999998553 33 3444444 68999999999 77777765 455556544
Q ss_pred CC---CeEEEEeecCCCCCCCCCceEEEEcCCCc--EEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEE
Q 011256 304 SS---GICLTQVSDAGTDGRPEGYTSAAFHPDGL--ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYL 378 (490)
Q Consensus 304 ~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 378 (490)
.. +... .+... ..+...+|+|+|+ .++++. ++.+.+||+.+++.......+ . .+++|+|||++|
T Consensus 96 ~~~~~g~~~-~l~~~------~~~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~l 164 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAV------KPMRILSGVDTGEAVVFTGAT-EDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLI 164 (582)
T ss_dssp ETTSTTCCE-ECTTS------CSBEEEEEEECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEE
T ss_pred eccCCCccc-cccCC------CCceeeeeCCCCCeEEEEecC-CCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEE
Confidence 32 2222 22211 2345668888774 444444 445569999988765554433 2 889999999999
Q ss_pred EEEeCC----C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCC
Q 011256 379 ATAAHD----G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 379 ~~~~~d----~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
++++.+ . |++||+.+++.. .+..+ ...+..++|+|||++|+++..+ ..||.++... .... .+..+
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--~~~~-~~~~~-- 236 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLR-VFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRD--GSVE-DLELP-- 236 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCE-EECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--CCEE-ECCCS--
T ss_pred EEEEEcCCCCeEEEEEcCCCCCce-EeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCC--CcEE-EccCC--
Confidence 977765 4 999999887754 33332 5678999999999999976655 2455443322 2222 33333
Q ss_pred CcceEEEE--------EcCCCCeEEEEeCCCcEEEecC
Q 011256 452 TGKATCVK--------FGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 452 ~~~v~~~~--------~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
...+..+. |+|||.++++++.||.+++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 34455555 9999988999999999999998
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=5.9e-17 Score=149.81 Aligned_cols=242 Identities=13% Similarity=0.186 Sum_probs=174.3
Q ss_pred cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeec------ccccceEEEEEe-cCCCEEEEEEC-CCeE
Q 011256 227 GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK------DHTAEVQAVTVH-ATNKYFVTASL-DNTW 298 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~l~s~~~-dg~i 298 (490)
++-..+.++++++++.++++.+.++.|.+||... .....+. ++...+.++++. +++.++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 4556789999999999888888899999999764 3333332 244578999995 56665555533 8999
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcCCCC
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGY 376 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~ 376 (490)
.+|| .++..+..+... +...+.+++++++|+++++...++.|.+||. .++.+..+. .+...+.+++++++|+
T Consensus 103 ~~~d-~~g~~~~~~~~~----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGAT----ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE 176 (286)
T ss_dssp EEEC-TTSCEEEEECTT----TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred EEEC-CCCcEEEEecCc----cCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence 9999 566666555321 2256789999999998888888899999996 455555553 3445789999999999
Q ss_pred EEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCC
Q 011256 377 YLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGT 452 (490)
Q Consensus 377 ~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
++++...++ |++||.. ++.+..+........+..++++++|.++++...+ +.+|+. ....+..+..+...
T Consensus 177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-----~g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-----DGQLISALESKVKH 250 (286)
T ss_dssp EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-----TSCEEEEEEESSCC
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-----CCCEEEEEcccCCC
Confidence 777776665 9999974 4455555443223568899999999988887654 666652 23344444433233
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 453 GKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
..+.+++++|+|+++++ +.|+.|++|++....
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 45789999999987766 679999999986543
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=3.4e-17 Score=154.74 Aligned_cols=244 Identities=13% Similarity=0.160 Sum_probs=183.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCC------------------------CcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVD------------------------TNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEG 241 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~ 241 (490)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. ++......++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888777 479999999898877664 455678999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceeeee---------cccccceEEEEEec-CCCEEEEEE-CCCeEEEEeCCCCeEEE
Q 011256 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTL---------KDHTAEVQAVTVHA-TNKYFVTAS-LDNTWCFYDLSSGICLT 310 (490)
Q Consensus 242 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~l~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~ 310 (490)
+++++.+.++.|++|+..... ..+..+ ..+......++++| ++.++++.+ .++.|.+|| .++..+.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 988888889999999976531 133333 23445789999999 788888876 689999999 5666666
Q ss_pred EeecCCC-----CCCCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcCCCCEEEEE-
Q 011256 311 QVSDAGT-----DGRPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATA- 381 (490)
Q Consensus 311 ~~~~~~~-----~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~- 381 (490)
.+..... .++-.....++++|+ +.++++...++.|++||..+++.+..+. .+...+..++|+| +..+.+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 5542211 112234789999998 7888888889999999999888888774 3556788999999 4333333
Q ss_pred ------eCCC-EEEEECCCCcceeeeecC-CCCCCeeEEEEcCCCCEEEEEecC--eEEEEEe
Q 011256 382 ------AHDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSGSYLAVASAD--IRVYQVA 434 (490)
Q Consensus 382 ------~~d~-i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~ 434 (490)
..+. |++||+.+++.+..+... .....+..++++|+|.++++...+ |++|++.
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2233 999999999888776421 224568999999999666666555 8888763
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=8.3e-19 Score=170.08 Aligned_cols=277 Identities=10% Similarity=-0.005 Sum_probs=175.9
Q ss_pred CeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 189 GIVSLDIHYSKDVIATGGVD---TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
.+.+++|+|+|++|+..... ..|++||+.+++......++......+.|+|+|++|+.++.++.|.+|++.++ .
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~---~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL---E 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC---C
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC---C
Confidence 36678899999988776543 36888899887765443333332334789999999999999999999999875 2
Q ss_pred eeeeecccccceEE-------------------EEEecCCCEEEEE-----ECCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 011256 266 CKHTLKDHTAEVQA-------------------VTVHATNKYFVTA-----SLDNTWCFYDLSSGICLTQVSDAGTDGRP 321 (490)
Q Consensus 266 ~~~~~~~h~~~v~~-------------------l~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 321 (490)
.......+...... +.|+|+++.++.+ ..+..|.+||+.+++....... .
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~------~ 187 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD------T 187 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE------S
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC------C
Confidence 22222223222212 2456667665544 3567899999998876554432 2
Q ss_pred CCceEEEEcC-CCcEEEEEcCC------CcEEEEECCCCceeeeecCC-CCCeEEEEEcCCCCEEEEEeCC-----C-EE
Q 011256 322 EGYTSAAFHP-DGLILGTGTSE------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHD-----G-VK 387 (490)
Q Consensus 322 ~~v~~~~~~~-~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d-----~-i~ 387 (490)
..+..+.|+| ++..|+..+.+ ..|.+||+..++........ ...+..+.|+|+|++|+.++.+ + |+
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 5688999999 78766665543 36889998765543333321 2357889999999977766433 3 99
Q ss_pred EEECCCCcceeeeecCCCCCCeeEEEEcC-CCCEEEEEec----------------C--eEEEEEeecCCcceEeeeecC
Q 011256 388 LWDLRKLKNFRSFESSDSETPTNSVDFDH-SGSYLAVASA----------------D--IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 388 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~----------------d--i~v~~~~~~~~~~~~~~~~~~ 448 (490)
+||+.+++........ ... +.|+| +|+++++++. + +.+|++.. .....+.....
T Consensus 268 ~~d~~~g~~~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~ 340 (396)
T 3c5m_A 268 KANPETLENEEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--KSAQKLCKHST 340 (396)
T ss_dssp EECTTTCCEEEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT--TBCCEEEECCC
T ss_pred EEECCCCCeEEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc--CceEEccCCCC
Confidence 9999887654333221 123 88999 9998887541 2 55665522 22222221110
Q ss_pred C------CCCcceEEEEEcCCCCeEEEEeC-CCcEEEecC
Q 011256 449 L------SGTGKATCVKFGPDAKYIAVGSM-DRNLRVFGL 481 (490)
Q Consensus 449 ~------~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~ 481 (490)
. .....+..++|+|||+.|+.++. +|...+|.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 0 00002456789999998887764 555555544
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=2.7e-17 Score=157.33 Aligned_cols=256 Identities=12% Similarity=0.111 Sum_probs=182.3
Q ss_pred CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe----------CCCcEEEEeCCCCCccceeeeecc----
Q 011256 207 VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKD---- 272 (490)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~---- 272 (490)
.|+.|++||..+++.+..+..+..+ .++|+|+|+++++++ .+++|.+||..+. +.+..+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL---TFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC---CEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC---cEEEEEEcCccc
Confidence 3789999999999999888877665 899999999988886 3678999998775 44444432
Q ss_pred --cccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEE-eecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEE
Q 011256 273 --HTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVK 346 (490)
Q Consensus 273 --h~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~ 346 (490)
+......++++|+|++++++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.||.+.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEE
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEE
Confidence 2345678999999999998874 58999999999988776 5421 22335677765 6777888899999
Q ss_pred EEECCC-Cceee------eecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc--eeeeecCC--------CCCC
Q 011256 347 IWDVKS-QANVA------KFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSD--------SETP 408 (490)
Q Consensus 347 iwd~~~-~~~~~------~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~--------~~~~ 408 (490)
+|++.. ++... .+.....++ .+.+++++..++..+.++ |.++|+..... ...+.... ....
T Consensus 177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC
T ss_pred EEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC
Confidence 999865 54441 222222222 333466777777777777 99999875432 12221110 0011
Q ss_pred eeEEEEcCCCCEEEEEec-------------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 409 TNSVDFDHSGSYLAVASA-------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~-------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
...++|+|++..++++.. .+.+||. ...+.+..+..+ . +.+++|+|||++|++++. +.
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~----~t~~~v~~i~~~--~--p~~ia~spdg~~l~v~n~-~~ 326 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT----KTKQRVARIPGR--D--ALSMTIDQQRNLMLTLDG-GN 326 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET----TTTEEEEEEECT--T--CCEEEEETTTTEEEEECS-SC
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC----CCCcEEEEEecC--C--eeEEEECCCCCEEEEeCC-Ce
Confidence 223789999988887643 2777776 556777777664 3 899999999999999887 99
Q ss_pred EEEecCCCC
Q 011256 476 LRVFGLPGN 484 (490)
Q Consensus 476 v~iw~~~~~ 484 (490)
|.+||..++
T Consensus 327 v~v~D~~t~ 335 (361)
T 2oiz_A 327 VNVYDISQP 335 (361)
T ss_dssp EEEEECSSS
T ss_pred EEEEECCCC
Confidence 999999876
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=1.6e-17 Score=158.07 Aligned_cols=238 Identities=11% Similarity=0.053 Sum_probs=163.3
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccC------ccCEEEEEEeeCCCEEEEEeCC-----------
Q 011256 189 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGH------SKKVTSVKFVTEGDLFLTGSAD----------- 250 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~d----------- 250 (490)
.+..++|+|++++++ ++..++.|.+||+.+++.+..+..+ ...+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 467899999998654 5557899999999999888776533 2337889999999999988865
Q ss_pred -CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCC---------
Q 011256 251 -KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGR--------- 320 (490)
Q Consensus 251 -g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------- 320 (490)
+.|.+||+.++.....+..+. +...+.+++|+|+++ +++++. .|.+||+.+++....+........
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 899999997743223333333 334688999999999 555543 499999999988776653210000
Q ss_pred ------CC----CceEEEEcCCCc-----------EEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEE
Q 011256 321 ------PE----GYTSAAFHPDGL-----------ILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYL 378 (490)
Q Consensus 321 ------~~----~v~~~~~~~~~~-----------~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l 378 (490)
.. ....+++++++. ++.....++.+.+|++ ..+...+.+++|+| +|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l 270 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQI 270 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEE
Confidence 00 234456665442 1112233344444433 22456789999999 99999
Q ss_pred EEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec
Q 011256 379 ATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 379 ~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 447 (490)
+++ .+.|.+||+.+++....+.. ...+.+++|+|+|++|++++.+ +.+|+. .....+..+.
T Consensus 271 ~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~----~~~~~~~~~~ 333 (349)
T 1jmx_B 271 YGV-LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP----DTLEKVKNIK 333 (349)
T ss_dssp EEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEET----TTTEEEEEEE
T ss_pred EEE-cCeEEEEECccCeEEEEEcC---CCCccceEECCCCCEEEEecCCCeEEEEec----cccceeeeee
Confidence 988 33499999999888777765 3457899999999988887665 889987 4445555443
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=2.2e-16 Score=145.93 Aligned_cols=238 Identities=13% Similarity=0.202 Sum_probs=176.9
Q ss_pred CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------cCccCEEEEEEe-eCCCEEEEEeC-CCcEEEE
Q 011256 185 TSKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFV-TEGDLFLTGSA-DKTVRVW 256 (490)
Q Consensus 185 ~h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~l~s~s~-dg~i~iw 256 (490)
.+-....++++++++.++++...++.|.+||.. ++.+..+. ++...+.++++. +++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 344678999999999988888889999999986 66666664 344678999995 67766666543 7899999
Q ss_pred eCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcE
Q 011256 257 QGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLI 335 (490)
Q Consensus 257 d~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 335 (490)
+... ..+..+. .+...+.+++++|+++++++...++.|.+||.. +..+..+... .+...+..++++++|.+
T Consensus 106 d~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 NQYG----QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS---KHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp CTTS----CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT---TTCSSEEEEEECSSSEE
T ss_pred CCCC----cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCC---CccCCcEEEEECCCCCE
Confidence 9433 3344443 344578999999999988887788999999965 4555554321 22356889999999998
Q ss_pred EEEEcCCCcEEEEECCCCceeeeecCC--CCCeEEEEEcCCCCEEEEEeCC--CEEEEECCCCcceeeeecCCCCCCeeE
Q 011256 336 LGTGTSEALVKIWDVKSQANVAKFDGH--VGAVTAISFSENGYYLATAAHD--GVKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 336 l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~d--~i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
+++...++.|++||. .++.+..+..+ ...+..++++++|+++++...+ .|.+||. +++.+..+........+..
T Consensus 178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 888888999999997 45556666433 3578999999999988888765 4999995 4566666655433345789
Q ss_pred EEEcCCCCEEEEEecC-eEEEEE
Q 011256 412 VDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
++++|+|+++++...+ +++|++
T Consensus 256 i~~~~~g~l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 256 VALMDDGSVVLASKDYRLYIYRY 278 (286)
T ss_dssp EEEETTTEEEEEETTTEEEEEEC
T ss_pred EEECCCCcEEEECCCCeEEEEEc
Confidence 9999999877774333 999986
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=3.9e-17 Score=169.63 Aligned_cols=288 Identities=9% Similarity=-0.033 Sum_probs=190.9
Q ss_pred cCCCCCeEEEEecCCCCEEEEE--eCCCcEEEEeCCCCcEEEEeccCccCEE---------EEEEe--eCCCE-EEEEeC
Q 011256 184 KTSKPGIVSLDIHYSKDVIATG--GVDTNAVLFDRPSGQIVTTLSGHSKKVT---------SVKFV--TEGDL-FLTGSA 249 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~-l~s~s~ 249 (490)
..|...+..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ |||+. |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 3467789999999776666666 5578899998655555677777776666 66676 99998 776654
Q ss_pred -CCcEEEEeCC--CCCccceeeeecc-----cccceEEEEEecCCCEEEEEECC----------CeEEEEeCCC------
Q 011256 250 -DKTVRVWQGS--EDGNYDCKHTLKD-----HTAEVQAVTVHATNKYFVTASLD----------NTWCFYDLSS------ 305 (490)
Q Consensus 250 -dg~i~iwd~~--~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~l~s~~~d----------g~i~iwd~~~------ 305 (490)
+..|.+|++. +.+ . ...+.. |...+..++|+|+|+.|++++.+ ..|++||+.+
T Consensus 100 ~~~~l~~~~~~~~g~~--~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGA--V-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp TTCCEEEECTTSTTCC--C-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred CCCeEEEEcCCCCCCC--C-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 5567777665 202 1 223333 66788999999999999998877 5899999988
Q ss_pred CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC--------CcEEEEECC-CC---ceeeeecCCCCCeEEEEEcC
Q 011256 306 GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVK-SQ---ANVAKFDGHVGAVTAISFSE 373 (490)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~l~~s~ 373 (490)
+... .+.. .+...+..++|+|||+.|+.++.+ ..|++||+. ++ +......++...+..+.|+|
T Consensus 177 ~~~~-~l~~----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 177 SAVR-ELSD----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp GGSE-ESSC----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred Ccee-EEEe----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 5433 2220 112567788999999999877644 379999998 56 44444444567899999999
Q ss_pred CCCEEEEEeCCC---EEEEECCCCcceeeeecCCCC------CCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEe
Q 011256 374 NGYYLATAAHDG---VKLWDLRKLKNFRSFESSDSE------TPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCI 443 (490)
Q Consensus 374 ~~~~l~~~~~d~---i~iwd~~~~~~~~~~~~~~~~------~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~ 443 (490)
||++++++..++ |.+||+.+++........... ..+..++|++++.++++++.. ++||.++.... ..
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~ 328 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG---EL 328 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT---EE
T ss_pred CCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC---cE
Confidence 999777777665 666676555543322221100 115678999999998887655 78887754322 23
Q ss_pred eeecCCCCCcceEEE-EEcCCCCeEEEEeCCCc--EEEecCCCC
Q 011256 444 KTFPDLSGTGKATCV-KFGPDAKYIAVGSMDRN--LRVFGLPGN 484 (490)
Q Consensus 444 ~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~--v~iw~~~~~ 484 (490)
..+..+ .+.+..+ +++.+.-++++++.+.. |.+|++.++
T Consensus 329 ~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 329 VDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 444443 4566666 55444334445555544 445555443
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=2.6e-17 Score=172.90 Aligned_cols=284 Identities=11% Similarity=0.090 Sum_probs=183.4
Q ss_pred EEEEecCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCC
Q 011256 191 VSLDIHYSKDVIATGGVD---------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSED 261 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 261 (490)
..+.|||||++|+.++.+ +.+++||+.+++.. .+..|...+..++|||||+.|+.+. |+.|.+|++.++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence 458899999999988875 56779999988754 4677888899999999999998885 689999998875
Q ss_pred Cccceeeeecccccce-----------------EEEEEecCCCEEEEEECCC----------------------------
Q 011256 262 GNYDCKHTLKDHTAEV-----------------QAVTVHATNKYFVTASLDN---------------------------- 296 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v-----------------~~l~~~~~~~~l~s~~~dg---------------------------- 296 (490)
.. ...+..++...+ ..+.|+|||++|+.++.|.
T Consensus 143 ~~--~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 143 PS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp CC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred ce--EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 31 111222333222 3589999999999875332
Q ss_pred --------eEEEEeCCC---Ce--EEEEeecC-CCCCCCCCceEEEEcCCCcEEEEEc----CCCcEEEEECCCCc----
Q 011256 297 --------TWCFYDLSS---GI--CLTQVSDA-GTDGRPEGYTSAAFHPDGLILGTGT----SEALVKIWDVKSQA---- 354 (490)
Q Consensus 297 --------~i~iwd~~~---~~--~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~----~dg~i~iwd~~~~~---- 354 (490)
.|.+||+.+ +. ....+... ...++...+..++|+|||++++... .+..|.+||+.+++
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 478888888 63 12222210 0002446788999999999666543 23479999999887
Q ss_pred ee--eee--cCCCCCeE-----EEEEcCCCCEEE-EEeCC-C---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE
Q 011256 355 NV--AKF--DGHVGAVT-----AISFSENGYYLA-TAAHD-G---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY 420 (490)
Q Consensus 355 ~~--~~~--~~~~~~i~-----~l~~s~~~~~l~-~~~~d-~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~ 420 (490)
+. ..+ ..+...|. .+.|+|||+.|+ ..+.. | |++||+..+.... +... ...+..+.. ++++.
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g--~~~v~~~~~-~d~~~ 376 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKG--TWEVIGIEA-LTSDY 376 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCS--SSCEEEEEE-ECSSE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccC--CEEEEEEEE-EeCCE
Confidence 22 222 34555444 789999999877 66543 4 8999988765443 2222 344555432 33554
Q ss_pred E-EEEec--C----eEEEEEeecCCcceEeeeecCC--CCCcceEEEEEcCCCCeEEEEeCC---CcEEEecCCCC
Q 011256 421 L-AVASA--D----IRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPDAKYIAVGSMD---RNLRVFGLPGN 484 (490)
Q Consensus 421 l-~~~~~--d----i~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~~~~~ 484 (490)
| ++++. + ..||.++..... ....+... .....+..+.|+|++++++..... ..+.+++..++
T Consensus 377 i~f~~~~~~~~~~~~~ly~v~~~g~~--~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 377 LYYISNEYKGMPGGRNLYKIQLIDYT--KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEEESCGGGCTTCBEEEEEETTEEE--EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EEEEEecCCCCCceeEEEEEECCCCC--cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 4 44444 2 688877542221 11122211 113567899999999987765433 35777776543
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.79 E-value=1.1e-16 Score=151.52 Aligned_cols=272 Identities=13% Similarity=0.075 Sum_probs=187.1
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
..|.++.|++++..++..+.++.+..| .+.....+..+...+.+++|+++|++++++..++.|.+||..++ ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---cEE
Confidence 357788899888777777788889999 35566677777778899999999998888888999999998775 333
Q ss_pred eeecccccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC--
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-- 341 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-- 341 (490)
.....+...+.+++++|+++++++...+ +.|.+||..++.....+... .....+.+++++|+|.++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---STAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS---SSCCCEEEEEECTTSCEEEEECCCB
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC---ccCCcccceEECCCCCEEEEecccc
Confidence 2222456789999999999988877666 68999999887654333211 12356889999999988877654
Q ss_pred ----CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCC-Ccceeee-----ecCCCCCCe
Q 011256 342 ----EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRK-LKNFRSF-----ESSDSETPT 409 (490)
Q Consensus 342 ----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~-~~~~~~~-----~~~~~~~~i 409 (490)
.+.|..||..+++... +......+..++|+|+|++|+++.. ++ |.+||+.. +.....+ ........+
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP 235 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred ccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCC
Confidence 3567777766554432 2223346789999999987665543 44 99999964 3322211 111112357
Q ss_pred eEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCC----CCcceEEEEEcCCCCeEEEEeCCC
Q 011256 410 NSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLS----GTGKATCVKFGPDAKYIAVGSMDR 474 (490)
Q Consensus 410 ~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg 474 (490)
..++++++|.++++...+ +.+|+. ....+..+.... +...+.+++|+||++.|+.++.+|
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-----~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK-----RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT-----TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC-----CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 889999999987777554 777764 123333333221 011578999999988777666553
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=1.1e-16 Score=151.29 Aligned_cols=247 Identities=12% Similarity=0.116 Sum_probs=178.7
Q ss_pred ccCEEEEEEeeCCCEEEEEeCC------------------------CcEEEEeCCCCCccceeeeec-ccccceEEEEEe
Q 011256 229 SKKVTSVKFVTEGDLFLTGSAD------------------------KTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVH 283 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~d------------------------g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~ 283 (490)
-+.+.+++++|+|+++++.+.+ ++|.+||..++ .....+. ++......++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence 3568999999999988888777 47999998765 3343333 444678999999
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCe-EEEEeecCCC----CCCCCCceEEEEcC-CCcEEEEEc-CCCcEEEEECCCCcee
Q 011256 284 ATNKYFVTASLDNTWCFYDLSSGI-CLTQVSDAGT----DGRPEGYTSAAFHP-DGLILGTGT-SEALVKIWDVKSQANV 356 (490)
Q Consensus 284 ~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~g~-~dg~i~iwd~~~~~~~ 356 (490)
|+|+++++...++.|.+||..... .+..+..... ..+......++++| ++.++++.+ .++.|++|| .+++.+
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 999988888889999999986542 3444421111 22335688999999 888888886 689999999 567776
Q ss_pred eeecC----------CCCCeEEEEEcCC-CCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEE
Q 011256 357 AKFDG----------HVGAVTAISFSEN-GYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424 (490)
Q Consensus 357 ~~~~~----------~~~~i~~l~~s~~-~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 424 (490)
..+.. +......++++|+ +.++++...++ |++||..+++.+..+........+..++|+| +..+.+.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 66632 2234899999998 66666665666 9999999888888876555566788999999 4333333
Q ss_pred ec-------C--eEEEEEeecCCcceEeeeecC-CCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 425 SA-------D--IRVYQVASVKADWNCIKTFPD-LSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 425 ~~-------d--i~v~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
+. + +.+|++ .....+..+.. ..+...+.+++++|+|.++++...++.|++|++...
T Consensus 258 g~~~v~~~~~~~v~~~~~----~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNF----SSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCCTTCSCCCCEEEEET----TTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEeccCCCcEEEEEEc----CCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 21 2 667775 33445555431 123567899999999988888888999999998653
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=3.3e-17 Score=158.43 Aligned_cols=264 Identities=13% Similarity=0.013 Sum_probs=176.0
Q ss_pred EEEeCCCCcEEEEeccCccCEEE-----EEEeeCCCEEEEEeC-CCc--EEEEeCCCCCccceeeeecccccceEEEEEe
Q 011256 212 VLFDRPSGQIVTTLSGHSKKVTS-----VKFVTEGDLFLTGSA-DKT--VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 283 (490)
Q Consensus 212 ~iwd~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 283 (490)
..++..++..+..+..|...... .+|+|||++|+.++. +|. |.+||+.++ .......++...+..+.|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEEC
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEc
Confidence 34577788888888888776666 889999999888887 674 788888775 4444455566566677899
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE--EEEcCCCcEEEEE----------------------
Q 011256 284 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS--AAFHPDGLILGTG---------------------- 339 (490)
Q Consensus 284 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~g---------------------- 339 (490)
|+++.|+.++.++.|++||+.+++........ ...+.. ..+++++.+++..
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVP-----AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECC-----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeech-----hhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 99999999999999999999998876655422 122322 3458999888742
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEEEEEeCC-------CEEEEECCCCcceeeeecCCCCCCeeE
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHD-------GVKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d-------~i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
..++.|.+||+.+++... +..+...+..+.|+| +|..|+.+..+ .|.++|+...... .+........+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTH 242 (388)
T ss_dssp CCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEE
T ss_pred CCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCccccc
Confidence 244689999999886544 334566789999999 99988877653 2888887655432 2322211135778
Q ss_pred EEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCCCC-cceEEEEEcCCCCeEEEE---------eCCCcE
Q 011256 412 VDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGT-GKATCVKFGPDAKYIAVG---------SMDRNL 476 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~---------~~dg~v 476 (490)
+.|+|+|+.|+..+.. ..||.++........+..+..+.+. .....+.|+|||+.|+.. ..++.|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 8999999987665432 1244443322223333333321000 001123799999988754 456689
Q ss_pred EEecCCCCC
Q 011256 477 RVFGLPGND 485 (490)
Q Consensus 477 ~iw~~~~~~ 485 (490)
++|++.++.
T Consensus 323 ~~~d~~~~~ 331 (388)
T 3pe7_A 323 YVFNMKNGT 331 (388)
T ss_dssp EEEETTTTE
T ss_pred EEEeccCCc
Confidence 999998653
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.77 E-value=1.8e-14 Score=133.67 Aligned_cols=278 Identities=10% Similarity=0.014 Sum_probs=192.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEE-eccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTT-LSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
...+.+++++++|+++++...++.|.+||.. +..... +..+...+.++++.++|.++++...++.|..|+.... .
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~ 89 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI---I 89 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC---E
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc---E
Confidence 4578999999999988877668899999987 554432 2334567999999999998887777888999987531 1
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
....+......+.++++.+++.++++...++.|.+||. ++........ .....+..+++.++|.++++...++.|
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP----NKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS----STTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC----CCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 11222234557899999999988888777889999998 5544322211 122567899999999888887778899
Q ss_pred EEEECCCCceeee-ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 346 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 346 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
..||. +++.... .......+.+++++++|.++++...++ |.+||. ++.. ..+........+..++++++|.++++
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCCEEEe
Confidence 99998 6654432 233445688999999998776665555 999998 5543 23333323467889999999986666
Q ss_pred EecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 424 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 424 ~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
...+ +.+|+. . .. +..+....+...+.++++ ++|.+.++.+ .+.|..++....
T Consensus 242 ~~~~~~i~~~d~---~--g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 242 EWGANKIGRLTS---N--NI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ETTTTEEEEEET---T--TE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ccCCceEEEECC---C--Cc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5344 666664 1 12 222221122457899999 8888666554 667777776554
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=9.1e-16 Score=146.67 Aligned_cols=258 Identities=12% Similarity=0.075 Sum_probs=181.7
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccC------ccCEEEEEEeeCCCEEEEEeC--CCcE
Q 011256 192 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH------SKKVTSVKFVTEGDLFLTGSA--DKTV 253 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~--dg~i 253 (490)
.++|+|+|+++++++ .++.|.+||..+++.+.++... ......++|+|+|++|+++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999998876 2567999999999888877632 244677999999999988864 6899
Q ss_pred EEEeCCCCCccceeee-ecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCC-CeEEEEeec-CCCCCCCCCceEEEE
Q 011256 254 RVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS-GICLTQVSD-AGTDGRPEGYTSAAF 329 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-~~~~~~~~~v~~~~~ 329 (490)
.+||+.+. +.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. ++....... ........+ ..+.+
T Consensus 134 ~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 207 (361)
T 2oiz_A 134 GIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAP 207 (361)
T ss_dssp EEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCC
T ss_pred EEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEe
Confidence 99999886 45555 432 1 22335667766 6788899999999999865 444322210 001111111 23334
Q ss_pred cCCCcEEEEEcCCCcEEEEECCCCce--eeeecC------C----CCCeEEEEEcCCCCEEEEEeC-----------CC-
Q 011256 330 HPDGLILGTGTSEALVKIWDVKSQAN--VAKFDG------H----VGAVTAISFSENGYYLATAAH-----------DG- 385 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~------~----~~~i~~l~~s~~~~~l~~~~~-----------d~- 385 (490)
++++..++..+.++.|.++|+..... +..+.. + ......++|+|++..++++.. ..
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 66777777777889999999875532 222110 0 111223789999887776543 23
Q ss_pred EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcc--eEeeeecCCCCCcceEEEEEcC
Q 011256 386 VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADW--NCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 386 i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
|.+||+.+.+.+..+... . +..++|+|+|++|++++.+ +.||+. .++ +.+..+... ......++++|
T Consensus 288 v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~~~v~v~D~----~t~~l~~~~~i~~~--G~~P~~~~~~p 357 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDGGNVNVYDI----SQPEPKLLRTIEGA--AEASLQVQFHP 357 (361)
T ss_dssp EEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECSSCEEEEEC----SSSSCEEEEEETTS--CSSEEEEEECC
T ss_pred EEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCCCeEEEEEC----CCCcceeeEEeccC--CCCcEEEEecC
Confidence 999999999999888875 3 8999999999999988866 999987 556 777776443 55678899999
Q ss_pred CCC
Q 011256 463 DAK 465 (490)
Q Consensus 463 ~~~ 465 (490)
+|+
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 986
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=1e-15 Score=145.60 Aligned_cols=254 Identities=10% Similarity=0.107 Sum_probs=169.0
Q ss_pred CeEEEEecCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---C--cEE
Q 011256 189 GIVSLDIHYSKDVIATGG---------VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---K--TVR 254 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g--~i~ 254 (490)
.+....+ +|+.++... .++.|++||+.+++... + ..+.++.|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 788776542 25679999998876543 3 568899999999988887754 3 377
Q ss_pred EEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC---------------------------CeEEEEeCCCCe
Q 011256 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------NTWCFYDLSSGI 307 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------------------------g~i~iwd~~~~~ 307 (490)
+|++.++ ....... +.. +..+.|+|+|+.|+.++.+ ..|.+||+.+++
T Consensus 89 ~~~~~~g---~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 163 (347)
T 2gop_A 89 VADLETL---SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE 163 (347)
T ss_dssp EEETTTT---EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred EEECCCC---ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence 7787764 3332222 334 9999999999988887642 579999999988
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-------cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-------LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~ 380 (490)
.+..+.. . .+..+.|+||| +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+.
T Consensus 164 ~~~~l~~------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 164 VIEEFEK------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp EEEEEEE------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEE
T ss_pred EEeeecC------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEE
Confidence 7444432 1 57889999999 777775542 334443334443 334334 455554 999998877
Q ss_pred EeCC--------C-EEEEECCCCcceeeeecCCCCCCeeE-EEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecC
Q 011256 381 AAHD--------G-VKLWDLRKLKNFRSFESSDSETPTNS-VDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 381 ~~~d--------~-i~iwd~~~~~~~~~~~~~~~~~~i~~-i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~ 448 (490)
++.+ . |.+|| +++...... .+...+.. +.|+ ++ ++++++.+ .+|| ++ . ....... .
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~---g~~~~~~-~ 299 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-D---GEIKPIA-K 299 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-S---SSEEEEE-C
T ss_pred EEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-C---CceEEEe-c
Confidence 6632 2 77888 443322222 22456775 8999 88 77777766 8999 86 2 2222222 2
Q ss_pred CCCCcceEEEEEcCCCCeEEEEeCCCcE-EEecCC
Q 011256 449 LSGTGKATCVKFGPDAKYIAVGSMDRNL-RVFGLP 482 (490)
Q Consensus 449 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v-~iw~~~ 482 (490)
+ .+.|.+++|+| .++++++.++.. .||.++
T Consensus 300 ~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 300 G--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred C--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 2 56789999999 677777777765 677664
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1.7e-15 Score=140.75 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=168.5
Q ss_pred CCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++|+++|+++++...++.|.+||..++.. .
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-~ 103 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-E 103 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-E
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-E
Confidence 34568999999998 7888888999999999877 566666778899999999999887777778999999866421 1
Q ss_pred eee-eecc-cccceEEEEEecCCCEEEEE----E-------------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE
Q 011256 266 CKH-TLKD-HTAEVQAVTVHATNKYFVTA----S-------------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 266 ~~~-~~~~-h~~~v~~l~~~~~~~~l~s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 326 (490)
... .... ....+..++++|+|+++++. + ..+.|..++.. +.... +.. +......
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~-----~~~~~~g 176 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PIR-----DRVKPNG 176 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EEC-----CCSSEEE
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-eec-----CCCCCcc
Confidence 111 1111 12356789999999988873 2 13466667665 44332 221 1245689
Q ss_pred EEEcCCCcEEEEEcCCCcEEEEECC-CCce---eeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeec
Q 011256 327 AAFHPDGLILGTGTSEALVKIWDVK-SQAN---VAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES 402 (490)
Q Consensus 327 ~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~ 402 (490)
++|+|+++++++.+.++.|.+||+. +++. ...+..+.+.+.+++++++|+++++. .++|.+||.. ++.+..+..
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEEC
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEEC
Confidence 9999999988777888999999987 4544 23333345567889999999877766 4459999986 666666665
Q ss_pred CCCCCCeeEEEE-cCCCCEEEEEecCeEEEEEe
Q 011256 403 SDSETPTNSVDF-DHSGSYLAVASADIRVYQVA 434 (490)
Q Consensus 403 ~~~~~~i~~i~~-s~~~~~l~~~~~di~v~~~~ 434 (490)
+ .. +.+++| +|+++.|++++.+ .+|.++
T Consensus 255 ~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~ 283 (296)
T 3e5z_A 255 P--QT-TSNLCFGGPEGRTLYMTVST-EFWSIE 283 (296)
T ss_dssp S--SC-CCEEEEESTTSCEEEEEETT-EEEEEE
T ss_pred C--CC-ceeEEEECCCCCEEEEEcCC-eEEEEE
Confidence 4 33 889999 5899999988877 555553
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=1.4e-15 Score=141.38 Aligned_cols=246 Identities=10% Similarity=0.081 Sum_probs=170.5
Q ss_pred cEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeE
Q 011256 220 QIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTW 298 (490)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i 298 (490)
..+..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 33444555666788999999998 7888888999999998763 34445567789999999999988777777899
Q ss_pred EEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE----Ec-------------CCCcEEEEECCCCceeeeecC
Q 011256 299 CFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GT-------------SEALVKIWDVKSQANVAKFDG 361 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----g~-------------~dg~i~iwd~~~~~~~~~~~~ 361 (490)
.+||..++......... .......+..++++|+|+++++ |+ ..+.|..+|.. ++ +..+..
T Consensus 93 ~~~d~~~g~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~ 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSF-EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR 169 (296)
T ss_dssp EEECSTTCCEEEEECEE-TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred EEEcCCCCcEEEEeecc-CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence 99999888754433211 1111135678999999998887 33 13456666655 44 334445
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC-CCcc---eeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeec
Q 011256 362 HVGAVTAISFSENGYYLATAAHDG-VKLWDLR-KLKN---FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASV 436 (490)
Q Consensus 362 ~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~-~~~~---~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~ 436 (490)
+......++|+|+|+.+++.+.++ |.+||+. .+.. ...+ ......+..++++++|+++++....+.+|+.
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~--- 244 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASAGDGVHVLTP--- 244 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEETTEEEEECT---
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEcCCeEEEECC---
Confidence 566789999999999986555555 9999997 4433 2333 1224556789999999977777222778774
Q ss_pred CCcceEeeeecCCCCCcceEEEEE-cCCCCeEEEEeCCCcEEEecCCCC
Q 011256 437 KADWNCIKTFPDLSGTGKATCVKF-GPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
....+..+..+ .. +++++| +|+++.|++++.+| +.-++....
T Consensus 245 --~g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 245 --DGDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp --TSCEEEEEECS--SC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred --CCCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 24445555543 34 889999 68999999888764 444455443
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=3.7e-15 Score=140.55 Aligned_cols=264 Identities=8% Similarity=-0.012 Sum_probs=183.2
Q ss_pred CCCcEEEEeCCCCcEEEEec------cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEE
Q 011256 207 VDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAV 280 (490)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 280 (490)
.++.|.+||..+++....+. ........+.+. ++.++++...++.|.+||..+. +.+..+. .......+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---~~~~~i~-~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---KEVGRIT-GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---CEEEEEE-CCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc---EEEEEcC-CCCCCcEE
Confidence 37899999999988765442 122346777773 4556666666899999999886 4555553 34678899
Q ss_pred EEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEEECCCCceeeee
Q 011256 281 TVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQANVAKF 359 (490)
Q Consensus 281 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~ 359 (490)
++++++..+++...++.|.+||..+++....+......+.......+++ .++.++++.. .++.|.+||+.+++.+..+
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 9998885444444899999999999998877664321111124556777 4455555544 4889999999999888877
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCC----------C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCe
Q 011256 360 DGHVGAVTAISFSENGYYLATAAHD----------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADI 428 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~~~~l~~~~~d----------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di 428 (490)
... .....+.++|+|++++++..+ + |.+||..+++....+.... ...+..++|+|++++|+++...+
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~~v 246 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINNDI 246 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESSSE
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEccEE
Confidence 643 345789999999988777654 4 9999999888776665432 23678999999999999887766
Q ss_pred EEEEEeecCCcceEeeeecCCCCCcceEEEEEcCC-CCeEEEE----eCCCcEEEecCC
Q 011256 429 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPD-AKYIAVG----SMDRNLRVFGLP 482 (490)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~----~~dg~v~iw~~~ 482 (490)
.+|+...... .....+.. ......+++++|+ +.+.++. ..++.|.+|+..
T Consensus 247 ~~~d~~t~~~--~~~~~~~~--~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 247 WRMPVEADRV--PVRPFLEF--RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEETTCSSC--CSSCSBCC--CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEECCCCce--eeeeeecC--CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 6666532221 10011111 1356789999995 5545554 468999999987
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.75 E-value=2.1e-15 Score=138.15 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=189.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCc-cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeeccc-cc
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHS-KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TA 275 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~ 275 (490)
.+++|++++.++.|.+||..+|+.+.++..+. ..+.++.++|+|++|+ +.++.|..||. ++ +.+..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G---~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG---RELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS---CEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC---CEEEEEcCCCCc
Confidence 46789999999999999999999999998776 4789999999999888 45788999998 44 556666544 34
Q ss_pred ceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCC-CCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC
Q 011256 276 EVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ 353 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 353 (490)
.+.++.+.++|+++++.+. ++.+..+|. +++.+..+..... ..+......+.+.++|+++++...++.|..||.. |
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 888888886 6777666653211 1111345566789999999999999999999988 9
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC----CCCCeeEEEEcCCCCEEEEEec--
Q 011256 354 ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD----SETPTNSVDFDHSGSYLAVASA-- 426 (490)
Q Consensus 354 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~----~~~~i~~i~~s~~~~~l~~~~~-- 426 (490)
+.+.++... ..+.++.+.++|.++++++.++ |..+|..+++.+..+.... ....+..+...++|.++++...
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH 234 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence 999888754 4566788899999999988887 9999999999888876431 1233678888999999888742
Q ss_pred --------CeEEEEEeecCCcceEeeeecCCCCCcceEEEE
Q 011256 427 --------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVK 459 (490)
Q Consensus 427 --------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 459 (490)
+.+++.++ ...+.+-.+.....-+.+..++
T Consensus 235 ~~~~~~~~~~~~~~~~---~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 235 DREAGKGKHPQLVEID---SEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CTTGGGSCCCSEEEEC---TTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccCCceEEEEC---CCCCEEEEecCcccccceeeee
Confidence 35677773 2344555555544445555543
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=1.4e-14 Score=136.80 Aligned_cols=239 Identities=11% Similarity=0.138 Sum_probs=169.9
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC----CcEEEEeCCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSED 261 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~ 261 (490)
+...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+++|+++++...+ +.|.+||..+.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 34567899999999988888889999999998887765554566789999999999988877666 68999998764
Q ss_pred Cccceeeee--cccccceEEEEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 262 GNYDCKHTL--KDHTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 262 ~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
. ....+ ..+...+.++.++|+++++++... .+.|..+|..++......... ..+..++|+|++
T Consensus 123 ~---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~~dg 193 (333)
T 2dg1_A 123 N---LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI------SVANGIALSTDE 193 (333)
T ss_dssp S---CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE------SSEEEEEECTTS
T ss_pred E---EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC------CcccceEECCCC
Confidence 2 21112 124457999999999988777654 356777777655543322211 346889999999
Q ss_pred cEE-EEEcCCCcEEEEECCC-Cceeee--------ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 334 LIL-GTGTSEALVKIWDVKS-QANVAK--------FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 334 ~~l-~~g~~dg~i~iwd~~~-~~~~~~--------~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
+.| ++.+.++.|.+||+.+ +..+.. +.++ ..+..++++++|+++++...++ |.+||. +++.+..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 855 4555678999999964 332221 1222 4678899999999888777665 999998 4555566654
Q ss_pred CCC----CCCeeEEEEcCCCCEEEEEecC------eEEEEEee
Q 011256 403 SDS----ETPTNSVDFDHSGSYLAVASAD------IRVYQVAS 435 (490)
Q Consensus 403 ~~~----~~~i~~i~~s~~~~~l~~~~~d------i~v~~~~~ 435 (490)
... ...+.+++|++++..|++++.+ ..||.++.
T Consensus 272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 311 1157899999998777665543 57777754
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=3.4e-14 Score=142.84 Aligned_cols=286 Identities=15% Similarity=0.125 Sum_probs=197.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCcEEEEeccCccCEEEEEEe----eCCCEEEEEeC-CCcEEEEeCCCC
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRP--SGQIVTTLSGHSKKVTSVKFV----TEGDLFLTGSA-DKTVRVWQGSED 261 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~~~l~s~s~-dg~i~iwd~~~~ 261 (490)
.+..+.|+|+|+++++++.|+.|.+||+. +++.+.++..... ...++|+ |+|+++++++. +++|.|+|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 56689999999999999999999999995 7888888875443 6789999 69998777664 599999998775
Q ss_pred Cccceeeeecc----------ccc-ceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEE
Q 011256 262 GNYDCKHTLKD----------HTA-EVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF 329 (490)
Q Consensus 262 ~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (490)
+.+..+.. |.. .+..+..++++..+ +....+|.|.++|............. .......+.|
T Consensus 277 ---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~----~~~~~~d~~~ 349 (567)
T 1qks_A 277 ---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS----AERFLHDGGL 349 (567)
T ss_dssp ---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE----CCSSEEEEEE
T ss_pred ---cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee----ccccccCceE
Confidence 44443321 222 57788888876654 44556799999999876433322211 1145678899
Q ss_pred cCCCcEEEEEc-CCCcEEEEECCCCceeeeecC-----CCCCeEEEEEcCCCC-EEEEEeC-CC-EEEEECCC-------
Q 011256 330 HPDGLILGTGT-SEALVKIWDVKSQANVAKFDG-----HVGAVTAISFSENGY-YLATAAH-DG-VKLWDLRK------- 393 (490)
Q Consensus 330 ~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~-~l~~~~~-d~-i~iwd~~~------- 393 (490)
+|+|++|+++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++. .++++.. ++ |.++|...
T Consensus 350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~ 428 (567)
T 1qks_A 350 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 428 (567)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcccc
Confidence 99999877654 578999999999987766643 33222222 578744 4445533 34 99999987
Q ss_pred CcceeeeecCCCCCCeeEEEEcCCCCEEEEEec--------C-eEEEEEeec-----CCcceEeee--ecCC-CCCcceE
Q 011256 394 LKNFRSFESSDSETPTNSVDFDHSGSYLAVASA--------D-IRVYQVASV-----KADWNCIKT--FPDL-SGTGKAT 456 (490)
Q Consensus 394 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~--------d-i~v~~~~~~-----~~~~~~~~~--~~~~-~~~~~v~ 456 (490)
.+.+..+.... ..-..+.++|+++++.+... + |.||++... ...+..+.. .... .....+.
T Consensus 429 ~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 429 WKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp TSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred CEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence 55666766542 22345778999999998762 2 999998544 111122211 0011 1245789
Q ss_pred EEEEcCCCCeEEEEeC-----CCcEEEecCCCCC
Q 011256 457 CVKFGPDAKYIAVGSM-----DRNLRVFGLPGND 485 (490)
Q Consensus 457 ~~~~s~~~~~l~s~~~-----dg~v~iw~~~~~~ 485 (490)
.+.|+++|+++..+.. ++.|.|+|..+.+
T Consensus 507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 507 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 9999999999887643 7999999987653
No 184
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=6.1e-16 Score=160.63 Aligned_cols=235 Identities=12% Similarity=0.057 Sum_probs=158.4
Q ss_pred EEEec--CCCCE-EEEEeC-CCcEEEEeCC--CCcEEEEecc-----CccCEEEEEEeeCCCEEEEEeCC----------
Q 011256 192 SLDIH--YSKDV-IATGGV-DTNAVLFDRP--SGQIVTTLSG-----HSKKVTSVKFVTEGDLFLTGSAD---------- 250 (490)
Q Consensus 192 ~~~~~--~~~~~-l~~~~~-dg~i~iwd~~--~~~~~~~~~~-----h~~~v~~l~~~~~~~~l~s~s~d---------- 250 (490)
.+.|+ |||+. |+.++. +..|+++++. .......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 44454 99998 776654 5677777775 2033455555 67789999999999999998877
Q ss_pred CcEEEEeCCCCC--c-cceeeeec-ccccceEEEEEecCCCEEEEEECC--------CeEEEEeCC-CCe--EEEEeecC
Q 011256 251 KTVRVWQGSEDG--N-YDCKHTLK-DHTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLS-SGI--CLTQVSDA 315 (490)
Q Consensus 251 g~i~iwd~~~~~--~-~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~--~~~~~~~~ 315 (490)
..|.+||+.+.. . ... ..+. .+...+..++|+|+|++|+.++.+ ..|++||+. ++. ....+..
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~- 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG- 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-
Confidence 589999987720 0 022 2333 455678889999999999988755 379999999 561 2223321
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEcCCC--cEEEEECCCCceeeeecCCCCC--------eEEEEEcCCCCEEEEEeCCC
Q 011256 316 GTDGRPEGYTSAAFHPDGLILGTGTSEA--LVKIWDVKSQANVAKFDGHVGA--------VTAISFSENGYYLATAAHDG 385 (490)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~~~~~l~~~~~d~ 385 (490)
++...+..+.|+|||++++++..++ .|.+||+.+++.......+... +..++|+|++.++++++. +
T Consensus 239 ---~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 239 ---GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp ---ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred ---CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 1236788999999999888888888 6777777666654443333222 567899999999999988 7
Q ss_pred -EEEE--ECCCCcceeeeecCCCCCCeeEE-EEcCCCCEEEEEecC--eEEEEEee
Q 011256 386 -VKLW--DLRKLKNFRSFESSDSETPTNSV-DFDHSGSYLAVASAD--IRVYQVAS 435 (490)
Q Consensus 386 -i~iw--d~~~~~~~~~~~~~~~~~~i~~i-~~s~~~~~l~~~~~d--i~v~~~~~ 435 (490)
++|| |+..+. ...+..+ ...+..+ .++.+..++++++.+ ..||.++.
T Consensus 315 ~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 315 AAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp SCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred ccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 7777 655544 4444433 4456666 554443344444444 67887754
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=3.2e-15 Score=156.29 Aligned_cols=277 Identities=10% Similarity=0.013 Sum_probs=182.1
Q ss_pred CCCCEEEEEeCC-----CcEEEEeCCCCcEEEEe------ccCccCEEEEEEeeCCCEEEEEeCCC-----cEEEEeCCC
Q 011256 197 YSKDVIATGGVD-----TNAVLFDRPSGQIVTTL------SGHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSE 260 (490)
Q Consensus 197 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~ 260 (490)
|+|++++....+ +.+++.+...+.....+ .+|...+..++|||||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 567665544322 23455554444432222 13445688999999999988776543 899999988
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEECCCe----------------EEEEeCCCCeEE--EEeecCCCCCCCC
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT----------------WCFYDLSSGICL--TQVSDAGTDGRPE 322 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~ 322 (490)
+ ....... ....+..++|+|||+.|+.++.++. |++|++.++... ..+. ...+..
T Consensus 161 g---~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~---~~~~~~ 233 (710)
T 2xdw_A 161 A---KELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---FPDEPK 233 (710)
T ss_dssp T---EEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC---CTTCTT
T ss_pred C---CCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec---cCCCCe
Confidence 6 3332211 2223678999999999999988766 999999887632 2222 112335
Q ss_pred CceEEEEcCCCcEEEEEcC-----CCcEEEEECCC------Cc-eeeeecCCCCCeEEEEEcCCCCEEEEEeCC----C-
Q 011256 323 GYTSAAFHPDGLILGTGTS-----EALVKIWDVKS------QA-NVAKFDGHVGAVTAISFSENGYYLATAAHD----G- 385 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----~- 385 (490)
.+..+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+.. .
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~ 312 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR 312 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence 5788999999998887764 56899999976 43 35556556555555 488888877766543 2
Q ss_pred EEEEECCCCcc--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 386 VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 386 i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
|.+||+.++.. ...+..+.....+..+.|++++.++++...+ .+||.++. ........+..+ .+.+..+.++
T Consensus 313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~--~~g~~~~~l~~~--~~~v~~~~~s 388 (710)
T 2xdw_A 313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL--ATGALLKIFPLE--VGSVVGYSGQ 388 (710)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET--TTCCEEEEECCC--SSEEEEEECC
T ss_pred EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC--CCCCEEEecCCC--CceEEEEecC
Confidence 89999987642 3444433222467889998777777777766 45665542 123334444443 6678899999
Q ss_pred CCCCeEEEEe----CCCcEEEecCCCCC
Q 011256 462 PDAKYIAVGS----MDRNLRVFGLPGND 485 (490)
Q Consensus 462 ~~~~~l~s~~----~dg~v~iw~~~~~~ 485 (490)
|++..|+... ..+.|++||+.+++
T Consensus 389 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 389 KKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 9987666432 34789999997765
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3.8e-15 Score=155.79 Aligned_cols=242 Identities=10% Similarity=0.085 Sum_probs=168.4
Q ss_pred cCCCCCeEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCc------
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGGVDT-----NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT------ 252 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~------ 252 (490)
..|...+..++|||||++|+.+..++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 34444688999999999998776543 8999999998876543222 23678999999999999988776
Q ss_pred ----------EEEEeCCCCCcc-ceeeeecccccceEEEEEecCCCEEEEEEC-----CCeEEEEeCCC------Ce-EE
Q 011256 253 ----------VRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASL-----DNTWCFYDLSS------GI-CL 309 (490)
Q Consensus 253 ----------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~-~~ 309 (490)
|++|++.++... ..+.....|...+..+.|+|+|++|+.++. +..|++||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999775311 122233335566889999999999888765 56899999976 42 23
Q ss_pred EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC----CcEEEEECCCCc--eeeeecCCCC--CeEEEEEcCCCCEEEEE
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE----ALVKIWDVKSQA--NVAKFDGHVG--AVTAISFSENGYYLATA 381 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~~--~~~~~~~~~~--~i~~l~~s~~~~~l~~~ 381 (490)
..+... ...+.. .|+++|..|+..+.. +.|.+||+.++. ....+..+.. .+..+.|++++.++++.
T Consensus 280 ~~l~~~-----~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 280 VKLIDN-----FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp EEEECS-----SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred EEeeCC-----CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 333322 123333 578888877665543 369999998764 2344444433 68889999878888888
Q ss_pred eCCC---EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC----eEEEEEe
Q 011256 382 AHDG---VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVA 434 (490)
Q Consensus 382 ~~d~---i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~ 434 (490)
..++ |.+||+.+++....+..+ ...+..+.++|++..++..... ..+|.++
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred EECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 8776 778888777766666554 5668889999998766654332 4455444
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=2.9e-14 Score=143.34 Aligned_cols=281 Identities=15% Similarity=0.163 Sum_probs=198.5
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC--CCCccceeeeeccc
Q 011256 196 HYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS--EDGNYDCKHTLKDH 273 (490)
Q Consensus 196 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~h 273 (490)
++.+.++++...++.|.++|..+++.+.++... ..+..+.|+|||+++++++.|+.|.+||+. +. +.+..+...
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G 239 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIG 239 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECC
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecC
Confidence 344557777788999999999999999888743 357799999999999999999999999995 43 455555432
Q ss_pred ccceEEEEEe----cCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCC-----CCC-CCceEEEEcCCCc-EEEEEcC
Q 011256 274 TAEVQAVTVH----ATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTD-----GRP-EGYTSAAFHPDGL-ILGTGTS 341 (490)
Q Consensus 274 ~~~v~~l~~~----~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~-----~~~-~~v~~~~~~~~~~-~l~~g~~ 341 (490)
.....++|+ |+|+++++++. ++.+.++|..+.+.+..+...... .|+ ..+..+..++++. +++....
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 346789999 69998887765 589999999999988877632110 011 2567888888765 4445566
Q ss_pred CCcEEEEECCCCcee--eeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeec-CCCCCCeeEEE-Ec
Q 011256 342 EALVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVD-FD 415 (490)
Q Consensus 342 dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~-~s 415 (490)
+|.|.++|....+.. ..+. .......+.|+|+|++++++... + |.++|+.+++....+.. .....+-..+. ++
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~ 397 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 397 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred CCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence 799999998775432 2222 33457789999999999887754 3 99999999988777765 32112112222 58
Q ss_pred CCCC-EEEEEe-c-C-eEEEEEeecC---CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC-------CCcEEEecC
Q 011256 416 HSGS-YLAVAS-A-D-IRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM-------DRNLRVFGL 481 (490)
Q Consensus 416 ~~~~-~l~~~~-~-d-i~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~v~iw~~ 481 (490)
|++. +.+++. . + +.+++.+... ..|..+..+... ...-..+.++|++++|.+... .+.|.+||+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 8754 444442 2 3 8888875422 127777777653 122244778999999998763 458999998
Q ss_pred CCC
Q 011256 482 PGN 484 (490)
Q Consensus 482 ~~~ 484 (490)
.+.
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 765
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.70 E-value=1e-14 Score=133.31 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=162.4
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 189 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
...+++++++|++++ +...++.|.+|+..++........+...+.++++.++|+++++.. ++.|.+||..... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~----~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN----Q 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC----C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce----E
Confidence 678999999999777 546788999999765543322233445678999999998666655 8899999987631 2
Q ss_pred eeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEE
Q 011256 268 HTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVK 346 (490)
Q Consensus 268 ~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 346 (490)
..+. .....+.++++.++++.+++...++.|.+|+..+........ .....+.+++++++|+++++...++.|.
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-----TGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-----CSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-----ccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 2222 233578999999999987777778999999866554332111 1124578899999999888877788999
Q ss_pred EEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 347 IWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 347 iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
+||............+...+.+++++++|.++++...++ |.+||........ ... .....+..++++++|+++++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEG
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEEC
Confidence 999887655443333446789999999997777666565 9999987644322 211 1135688999999998777766
Q ss_pred cC--eEEEEE
Q 011256 426 AD--IRVYQV 433 (490)
Q Consensus 426 ~d--i~v~~~ 433 (490)
.+ |.+|++
T Consensus 253 ~~~~v~~~~~ 262 (270)
T 1rwi_B 253 GNDRVVKLTS 262 (270)
T ss_dssp GGTEEEEECC
T ss_pred CCCEEEEEcC
Confidence 65 666665
No 189
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=7.7e-16 Score=149.09 Aligned_cols=255 Identities=10% Similarity=-0.011 Sum_probs=166.8
Q ss_pred EEEeCCCCcEEEEeccCccC-----EEEEEEeeCCCEEEEEeCC---CcEEEEeCCCCCccceeeeecccccceEEEEEe
Q 011256 212 VLFDRPSGQIVTTLSGHSKK-----VTSVKFVTEGDLFLTGSAD---KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVH 283 (490)
Q Consensus 212 ~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 283 (490)
..+|..++..+..+..+... +.+++|+|+|++|+.+... ..|.+||+.++ .......++......+.|+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~~s 89 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QAVQLTEGKGDNTFGGFIS 89 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EEEECCCSSCBCTTTCEEC
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cEEEeecCCCCccccceEC
Confidence 34477788877777765443 6778999999988776543 36888888774 3322222222223347899
Q ss_pred cCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceE-------------------EEEcCCCcEEEEE-----
Q 011256 284 ATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTS-------------------AAFHPDGLILGTG----- 339 (490)
Q Consensus 284 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~g----- 339 (490)
|+|++|+.++.++.|++||+.+++......... ..... +.|+|++..++.+
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~-----~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDE-----EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCT-----TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc-----ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 999999999999999999999887655443221 11111 2456777666554
Q ss_pred cCCCcEEEEECCCCceeeeecCCCCCeEEEEEcC-CCCEEEEEeCC------C-EEEEECCCCcceeeeecCCCCCCeeE
Q 011256 340 TSEALVKIWDVKSQANVAKFDGHVGAVTAISFSE-NGYYLATAAHD------G-VKLWDLRKLKNFRSFESSDSETPTNS 411 (490)
Q Consensus 340 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d------~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 411 (490)
..+..|++||+.+++..... .+...+..+.|+| ++..|+..+.+ . |.+||+.......... ......+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~ 242 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH 242 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence 35668999999888765444 3566789999999 78877666542 3 8888887654322222 111235778
Q ss_pred EEEcCCCCEEEEEecC-------eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC-CCCeEEEEe------------
Q 011256 412 VDFDHSGSYLAVASAD-------IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP-DAKYIAVGS------------ 471 (490)
Q Consensus 412 i~~s~~~~~l~~~~~d-------i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~------------ 471 (490)
+.|+|+|++|+.++.+ +.+|++. ......+..+. ... +.|+| ||+++++++
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~--~g~~~~l~~~~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPE--TLENEEVMVMP------PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTT--TCCEEEEEECC------SEE-EEEECSSSSEEEEEECCC---------
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECC--CCCeEEeeeCC------CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 9999999987776543 5555542 22222222221 122 88999 999888765
Q ss_pred ----CCCcEEEecCCCCC
Q 011256 472 ----MDRNLRVFGLPGND 485 (490)
Q Consensus 472 ----~dg~v~iw~~~~~~ 485 (490)
.++.|++|++.++.
T Consensus 314 ~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp -CCCCCCEEEEEETTTTB
T ss_pred cccCCCCcEEEEecccCc
Confidence 34789999987654
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.69 E-value=5.1e-13 Score=123.83 Aligned_cols=275 Identities=9% Similarity=0.052 Sum_probs=187.6
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
...+.++.++++|.++++...++.|.+||.. ++... .+..+...+.++++.++|.++++...++.|..||.. +. .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~--~ 94 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG--F 94 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--E
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC--e
Confidence 3578899999999988877778999999987 65543 233344678999999999977777667889999977 32 1
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
....+......+.++++.+++.++++...++.|..||.. +.... +... .....+.++++.++|+++++...++.|
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLP---NKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCC---CCCCCceeEEECCCCCEEEEecCCCeE
Confidence 222222234678999999999888877778899999987 55442 2211 122567899999999977777767899
Q ss_pred EEEECCCCceeee-ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 346 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 346 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
..||. +++.... ...+...+.+++++++|.+.++....+ |.+||. ++... .+........+.+++++++|.+.++
T Consensus 170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS-EYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-EEECCCCCCCceEEEECCCCCEEEe
Confidence 99998 5544332 223345789999999998777766555 999998 44332 2222222456889999999986666
Q ss_pred EecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 424 ASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 424 ~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
...+ +..|+. ..... .+........+.+++++++|.+.++.. . .|..++.
T Consensus 247 ~~~~~~i~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 247 EWGANQIGRITN---DNTIQ---EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ETTTTEEEEECT---TSCEE---EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ccCCCeEEEECC---CCcEE---EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 5443 555553 11111 221111245678999999998655544 4 6666654
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=6.8e-14 Score=131.87 Aligned_cols=231 Identities=9% Similarity=-0.013 Sum_probs=163.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
....+.+. ++.++++...++.|.+||..+++.+.++.. ......+++++++.++++...++.|.+||..+. +...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~---~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY---EITG 119 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT---EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC---eEEE
Confidence 35667774 455666666789999999999999888863 466889999999865555448899999999875 4444
Q ss_pred eecccc-----cceEEEEEecCCCEEEEEE--CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 269 TLKDHT-----AEVQAVTVHATNKYFVTAS--LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 269 ~~~~h~-----~~v~~l~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.+.... .....+++ ++..+++++ .++.|.+||+.+++.+..+... .....+.++|+|++++++..
T Consensus 120 ~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCC
T ss_pred EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECC
Confidence 443222 14556777 344555554 4899999999999988777643 34567899999998777665
Q ss_pred C----------CcEEEEECCCCceeeeecCC-CCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCee
Q 011256 342 E----------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 342 d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
+ +.|.+||..+++....+... ......++|+|++.+|+++.. .|.+||..+++...............
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~ 270 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYY 270 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEE
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceE
Confidence 4 78999999999877766532 236899999999999888765 79999998876532111111135678
Q ss_pred EEEEcCCCCEEEEEe-----cC--eEEEEE
Q 011256 411 SVDFDHSGSYLAVAS-----AD--IRVYQV 433 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~-----~d--i~v~~~ 433 (490)
.++++|++..|+++. .+ +.+|+.
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 999999554454444 23 666664
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.69 E-value=3.9e-15 Score=155.23 Aligned_cols=274 Identities=13% Similarity=0.002 Sum_probs=175.9
Q ss_pred CCCCEEEEEeCCC-----cEEEEeCCCCcEEEEec------cCccCEEEEEEeeCCCEEEE-----EeCCCcEEEEeCCC
Q 011256 197 YSKDVIATGGVDT-----NAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLT-----GSADKTVRVWQGSE 260 (490)
Q Consensus 197 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s-----~s~dg~i~iwd~~~ 260 (490)
|+|++++....++ .+++.+...+.....+. +|...+.+++|||||++|+. |+.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5677766555433 24444544444333222 45567999999999998883 44456899999988
Q ss_pred CCccceeeeecccccce--EEEEEecCCCEEEEEECCCe-------------EEEEeCCCCeE--EEEeecCCCCCCCCC
Q 011256 261 DGNYDCKHTLKDHTAEV--QAVTVHATNKYFVTASLDNT-------------WCFYDLSSGIC--LTQVSDAGTDGRPEG 323 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~ 323 (490)
+. .+. ..+...+ ..++|+|+|+.|+.++.|.. |++|++.++.. ...+. ...+...
T Consensus 157 g~---~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~---~~~~~~~ 228 (695)
T 2bkl_A 157 GE---WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE---RTGDPTT 228 (695)
T ss_dssp CC---BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC---CCCCTTC
T ss_pred CC---CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe---cCCCCEE
Confidence 63 220 1111222 67899999999999998776 99999998762 22222 2233456
Q ss_pred ceEEEEcCCCcEEEEEcCCC----cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CC-EEEEECCCCc
Q 011256 324 YTSAAFHPDGLILGTGTSEA----LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH---DG-VKLWDLRKLK 395 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---d~-i~iwd~~~~~ 395 (490)
+..+.|+|||++|+.++.++ .|++||..++.. ..+..+...+....+ ++|.+++.+.. ++ |.+||+.++.
T Consensus 229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 78999999999888877665 677777655543 344445555666666 56664444432 24 9999998765
Q ss_pred c--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 396 N--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 396 ~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
. ...+..+.....+..+.|+ ++.++++...+ .+||.++.. ......+..+ ..+.+..+.++|++..|+...
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~---g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK---GKPVRTVQLP-GVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT---CCEEEECCCS-SSSEECCCBSCTTCSEEEEEE
T ss_pred ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC---CCeeEEecCC-CCeEEEEeecCCCCCEEEEEE
Confidence 3 2333333224457888888 66677777766 777877532 2233333322 255677888999998776332
Q ss_pred ----CCCcEEEecCCCCC
Q 011256 472 ----MDRNLRVFGLPGND 485 (490)
Q Consensus 472 ----~dg~v~iw~~~~~~ 485 (490)
..+.|++||+.+++
T Consensus 382 ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 382 TSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EETTEEEEEEEEETTTCC
T ss_pred cCCCCCCEEEEEECCCCc
Confidence 34789999997654
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.8e-14 Score=136.93 Aligned_cols=220 Identities=11% Similarity=0.104 Sum_probs=150.7
Q ss_pred CCeEEEEecCCCCEEEEEeCC---C--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC------------
Q 011256 188 PGIVSLDIHYSKDVIATGGVD---T--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD------------ 250 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d------------ 250 (490)
..+.++.|+|+|+.|+.++.+ + .|++|++.+++.......+ . +.++.|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357889999999998887654 2 3888898887765544433 3 9999999999988887632
Q ss_pred ---------------CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCC-------eEEEEeCCCCeE
Q 011256 251 ---------------KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-------TWCFYDLSSGIC 308 (490)
Q Consensus 251 ---------------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~ 308 (490)
..|.+||+.++ ..+..+.. . .+..+.|+|+| ++++++.++ ...+|.+.++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp CCCC---------CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cceeecCcccccCccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence 56889998775 33233333 3 78899999999 777776542 334444335543
Q ss_pred EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC--------CcEEEEECCCCceeeeecCCCCCeEE-EEEcCCCCEEE
Q 011256 309 LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANVAKFDGHVGAVTA-ISFSENGYYLA 379 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~l~ 379 (490)
. .+... ..+.. ++|||+.|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ +++
T Consensus 211 ~-~l~~~------~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 211 E-KMFEK------VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp E-EEEEE------ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEE
T ss_pred E-EeccC------cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEE
Confidence 3 33211 22333 38999988776643 4688888 55555445556677886 9999 88 888
Q ss_pred EEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEe
Q 011256 380 TAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVA 434 (490)
Q Consensus 380 ~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~ 434 (490)
+++.++ ++|| +.+++. ..+... ...+.++.|+| .++++++.+ ..||.++
T Consensus 278 ~~~~~~~~~l~-~~~g~~-~~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEI-KPIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEETTEEEEE-EESSSE-EEEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEecCCcEEEE-EcCCce-EEEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 888887 8888 775443 333222 56789999999 666666655 4889885
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=5.4e-13 Score=127.60 Aligned_cols=267 Identities=10% Similarity=-0.005 Sum_probs=178.5
Q ss_pred cCCCCEEEEEeC--CC---cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe----------CCCcEEEEeCCC
Q 011256 196 HYSKDVIATGGV--DT---NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSE 260 (490)
Q Consensus 196 ~~~~~~l~~~~~--dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~ 260 (490)
.|+++++++... .+ .|.+||..+++.+.++.....+ .+.++|||++++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 356666655542 22 7899999999998888755554 899999999888875 367899999976
Q ss_pred CCccceeeeeccc-------ccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEE-eecCCCCCCCCCceEEEEc
Q 011256 261 DGNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 261 ~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~ 330 (490)
. +.+..+... ......+.|+|+|++|++++. ++.|.++| .+++.+.. +... .++.+.
T Consensus 107 ~---~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---------~~~~~~ 173 (373)
T 2mad_H 107 F---LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---------TCYHIH 173 (373)
T ss_pred C---cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---------ceEEEE
Confidence 5 333333211 123458999999999998874 57899999 99988776 5421 234555
Q ss_pred CCC-cEEEEEcCCCcEEEEECCCCceeeeec-----CCCCCe-EEEEEcCCCCEEEEEeCCC-EEEEECCCCc--ceeee
Q 011256 331 PDG-LILGTGTSEALVKIWDVKSQANVAKFD-----GHVGAV-TAISFSENGYYLATAAHDG-VKLWDLRKLK--NFRSF 400 (490)
Q Consensus 331 ~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~--~~~~~ 400 (490)
|++ ..+++.+.||.+.++|. +++.+.... ....++ ....+.+++..++..+..+ +.+.|+.... ....+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 654 45667778999999999 877663322 111222 2345666654443333455 9999987542 22222
Q ss_pred ecCC--------CCCCeeEEEEcCCCCEEEEEec------------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEE
Q 011256 401 ESSD--------SETPTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKF 460 (490)
Q Consensus 401 ~~~~--------~~~~i~~i~~s~~~~~l~~~~~------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 460 (490)
.... .......+.+++++..++++.. .+.++|. ...+.+..+.. .....++.|
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~---g~~p~~i~~ 325 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISL---GHDVDAISV 325 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEEC---CCCcCeEEE
Confidence 2110 0122344789999998888643 2666665 45666666643 346789999
Q ss_pred cCCCC-eEEEEe-CCCcEEEecCCCCC
Q 011256 461 GPDAK-YIAVGS-MDRNLRVFGLPGND 485 (490)
Q Consensus 461 s~~~~-~l~s~~-~dg~v~iw~~~~~~ 485 (490)
+|||+ .++++. .++.|.+||+.+.+
T Consensus 326 s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 326 AQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 99999 777777 48999999998765
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.67 E-value=3e-14 Score=134.55 Aligned_cols=272 Identities=10% Similarity=0.036 Sum_probs=183.9
Q ss_pred ecCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe----------CCCcEEEEeCC
Q 011256 195 IHYSKDVIATGGV-----DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGS 259 (490)
Q Consensus 195 ~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~ 259 (490)
..|+++.+++... ++.|.++|..+++.+.++.....+ . +.++|||+++++++ .++.|.+||..
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~ 117 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 117 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 4578887777654 679999999999999988865565 4 99999999887765 36789999998
Q ss_pred CCCccceeeeeccc-------ccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc
Q 011256 260 EDGNYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 260 ~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
+. +.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+..+... . ....+.
T Consensus 118 t~---~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------g--~~~~~P 186 (386)
T 3sjl_D 118 TL---LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------D--CYHIFP 186 (386)
T ss_dssp TC---CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC------S--EEEEEE
T ss_pred CC---eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC------C--cceeec
Confidence 86 444444311 124567899999999988874 689999999999999888632 1 122232
Q ss_pred CCCcEEEEEcCCCcEEEEECCC-Cceeeeec----CCCCCeE-EEEEc-CCCCEEEEEeCCC-EEEEECCCCc--ceeee
Q 011256 331 PDGLILGTGTSEALVKIWDVKS-QANVAKFD----GHVGAVT-AISFS-ENGYYLATAAHDG-VKLWDLRKLK--NFRSF 400 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~----~~~~~i~-~l~~s-~~~~~l~~~~~d~-i~iwd~~~~~--~~~~~ 400 (490)
.....+++.+.||.+.+.++.+ ++...... ....++. ...|. ++|+++++.. ++ |+++|+.... ....+
T Consensus 187 ~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 187 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCE
T ss_pred CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecce
Confidence 2445666778888888888876 55432211 1112222 24564 6776666444 55 9999997653 33333
Q ss_pred ecC--------CCCCCeeEEEEcCCCCEEEEEec----------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 401 ESS--------DSETPTNSVDFDHSGSYLAVASA----------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 401 ~~~--------~~~~~i~~i~~s~~~~~l~~~~~----------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
... -.......+.++++++.+++... .-.||-++. .+++.+..+.. ...+.++.+++
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~--~t~kv~~~i~v---g~~~~~lavs~ 340 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFEM---GHEIDSINVSQ 340 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET--TTCCEEEEEEE---EEEECEEEECS
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC--CCCeEEEEEEC---CCCcceEEECC
Confidence 210 00123445778999999888742 134444433 55666666654 44678999999
Q ss_pred CCC-eEEEEe-CCCcEEEecCCCCC
Q 011256 463 DAK-YIAVGS-MDRNLRVFGLPGND 485 (490)
Q Consensus 463 ~~~-~l~s~~-~dg~v~iw~~~~~~ 485 (490)
|++ +|++++ .++.|.++|..+++
T Consensus 341 D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 341 DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 997 666654 48999999998764
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=2.8e-14 Score=130.42 Aligned_cols=238 Identities=11% Similarity=0.054 Sum_probs=161.6
Q ss_pred CEEEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEE
Q 011256 231 KVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
...+++++++|++++ +.+.++.|.+|+..+.. .......+...+.++++.++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 578899999999776 44678899999875531 1111122335678899999998666555 889999998765432
Q ss_pred EEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEE
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL 388 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i 388 (490)
.+.. .....+..++++++|.++++...++.|.+||..+.............+.+++++++|+++++...++ |.+
T Consensus 101 -~~~~----~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 101 -VLPF----DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp -ECCC----CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred -eeec----CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 2211 1124678999999999888877788999998765544332223334678999999998777666555 999
Q ss_pred EECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe
Q 011256 389 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 466 (490)
||............. ...+..++++++|.++++...+ +.+|+... . ....... .+...+.+++++++|++
T Consensus 176 ~~~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--~---~~~~~~~-~~~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 176 LEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--T---TSTVLPF-TGLNTPLAVAVDSDRTV 247 (270)
T ss_dssp ECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTC--S---CCEECCC-CSCSCEEEEEECTTCCE
T ss_pred EecCCCceEeecccC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCC--C---cceeecc-CCCCCceeEEECCCCCE
Confidence 998765543222111 2568899999999766666544 66666421 1 1111111 12356899999999998
Q ss_pred EEEEeCCCcEEEecCCCCC
Q 011256 467 IAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 467 l~s~~~dg~v~iw~~~~~~ 485 (490)
+++...++.|++|++....
T Consensus 248 ~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 248 YVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEGGGTEEEEECCCGGG
T ss_pred EEEECCCCEEEEEcCCCcc
Confidence 8888889999999987654
No 197
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=3.7e-14 Score=147.83 Aligned_cols=231 Identities=10% Similarity=-0.009 Sum_probs=154.0
Q ss_pred cCCCCCeEEEEecCCCCEEEE-----EeCCCcEEEEeCCCCcEEEEeccCccCE--EEEEEeeCCCEEEEEeCCCc----
Q 011256 184 KTSKPGIVSLDIHYSKDVIAT-----GGVDTNAVLFDRPSGQIVTTLSGHSKKV--TSVKFVTEGDLFLTGSADKT---- 252 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~s~dg~---- 252 (490)
..|...+.+++|||||++||. |+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 455567899999999999884 3445689999999987641 1122223 67999999999999998876
Q ss_pred ---------EEEEeCCCCCc-cceeeeecccccceEEEEEecCCCEEEEEECCC----eEEEEeCCCCeEEEEeecCCCC
Q 011256 253 ---------VRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN----TWCFYDLSSGICLTQVSDAGTD 318 (490)
Q Consensus 253 ---------i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~ 318 (490)
|++|++.++.. ...+.....|...+..+.|+|+|++|+.++.++ .|.+|+..++.........
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~--- 271 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV--- 271 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS---
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC---
Confidence 99999987532 123334445666889999999999988887666 6777776655433322211
Q ss_pred CCCCCceEEEEcCCCcEEEEEc---CCCcEEEEECCCCce--eeee-cCC-CCCeEEEEEcCCCCEEEEEeCCC-EEEEE
Q 011256 319 GRPEGYTSAAFHPDGLILGTGT---SEALVKIWDVKSQAN--VAKF-DGH-VGAVTAISFSENGYYLATAAHDG-VKLWD 390 (490)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~--~~~~-~~~-~~~i~~l~~s~~~~~l~~~~~d~-i~iwd 390 (490)
..+....+ ++|.+++.+. .++.|.+||+.++.. ...+ ..+ ...+..++|+ ++.++++...++ .+||.
T Consensus 272 ---~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 272 ---GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp ---SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred ---CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 33455555 5666444444 257899999987653 2333 323 4468888888 677888888876 55554
Q ss_pred CC-CCcceeeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 391 LR-KLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 391 ~~-~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
+. .+.....+..+. ...+..+.++|++..++...
T Consensus 347 ~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 347 ATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp EETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEE
T ss_pred EeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEE
Confidence 33 244444443321 34567788899987766543
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=1.1e-13 Score=126.80 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=160.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccc-cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCC
Q 011256 240 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT-AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTD 318 (490)
Q Consensus 240 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 318 (490)
.+++|++++.|+.|.+||..++ +.+..+..+. ..+.++.+.|+|++++ +.++.|..||. +++.+..+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--- 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--- 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC---
T ss_pred CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC---
Confidence 4678999999999999999776 6677777655 4788999999999888 45788999999 88888888642
Q ss_pred CCCCCceEEEEcCCCcEEEEEcC-CCcEEEEECCCCceeeeecC------CCCCeEEEEEcCCCCEEEEEeCCC-EEEEE
Q 011256 319 GRPEGYTSAAFHPDGLILGTGTS-EALVKIWDVKSQANVAKFDG------HVGAVTAISFSENGYYLATAAHDG-VKLWD 390 (490)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd 390 (490)
....+.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+.+.++|.++++...++ |.+||
T Consensus 75 -~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 75 -AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp -TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred -CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 1245788999999999999877 778888885 7777766541 222455678899999999998887 99999
Q ss_pred CCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCC----CCcceEEEEEcCCCCe
Q 011256 391 LRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLS----GTGKATCVKFGPDAKY 466 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 466 (490)
.. ++.+..+... ..+.++.+.++|+++++++.+-+|+.++. .+.+.+..+.... ....+..+...++|..
T Consensus 153 ~~-G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~--~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 153 PN-GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNL--ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp TT-SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECT--TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred CC-CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeC--cCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 88 8888888764 34667888999999988877744555433 2233443332210 1234788888899988
Q ss_pred EEEE
Q 011256 467 IAVG 470 (490)
Q Consensus 467 l~s~ 470 (490)
+++.
T Consensus 227 ~v~~ 230 (276)
T 3no2_A 227 YICN 230 (276)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8776
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.62 E-value=8.9e-13 Score=123.21 Aligned_cols=231 Identities=11% Similarity=0.118 Sum_probs=160.5
Q ss_pred CeEEEEecCCCCEEEE-------EeCCCcEEEEeCCCCcEEEEec----cCccCEEEEEEeeC-CCEEEEEeCCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIAT-------GGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTE-GDLFLTGSADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw 256 (490)
...+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ |+++++. ..+.|.+|
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~ 97 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEE
Confidence 4578999999988888 6778899999988877643322 25567899999999 6655544 44578899
Q ss_pred eCCCCCccceeee-ec----ccccceEEEEEecCCCEEEEEECC---------------CeEEEEeCCCCeEEEEeecCC
Q 011256 257 QGSEDGNYDCKHT-LK----DHTAEVQAVTVHATNKYFVTASLD---------------NTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 257 d~~~~~~~~~~~~-~~----~h~~~v~~l~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~ 316 (490)
|.. + ..... .. .....+.+++++++|+++++...+ +.|..||.. +.........
T Consensus 98 d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~- 171 (314)
T 1pjx_A 98 QTD-G---TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF- 171 (314)
T ss_dssp ETT-S---CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-
T ss_pred eCC-C---CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-
Confidence 987 3 22211 11 122458899999999888777655 578888876 5443322211
Q ss_pred CCCCCCCceEEEEc----CCCcEEEE-EcCCCcEEEEECC-CCc-----eeeeecCCC-CCeEEEEEcCCCCEEEEEeCC
Q 011256 317 TDGRPEGYTSAAFH----PDGLILGT-GTSEALVKIWDVK-SQA-----NVAKFDGHV-GAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 317 ~~~~~~~v~~~~~~----~~~~~l~~-g~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~d 384 (490)
.....++++ ++++.+++ ...++.|.+||+. +++ ....+..+. ..+..++++++|.++++...+
T Consensus 172 -----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 172 -----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 345788999 99965544 4567899999986 443 222333333 568899999999988887666
Q ss_pred C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEE
Q 011256 385 G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQV 433 (490)
Q Consensus 385 ~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~ 433 (490)
+ |.+||..+++....+..+ ...+.+++|+++|+.|++++.+ +..|++
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp TEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CEEEEEcCCCCcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 5 999999877666666544 3678999999999966666544 555554
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=7.6e-12 Score=115.79 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=165.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEE-EEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIV-TTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
...+.+++++++|.++++...++.|..||.. ++.. ..+......+.++++.++|.++++...++.|.+||. ++. .
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~ 131 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK--I 131 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--E
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC--E
Confidence 3578999999999988887778889999986 4432 222234567899999999988887777889999998 321 1
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
.......+...+.++++.+++..+++...++.|..||. ++....... . .....+.+++++++|.++++...++.|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-~---~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKI-P---TPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-S---STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeC-C---CCCCcceeEEECCCCCEEEEccCCceE
Confidence 12222334567899999999988877777889999999 665443211 1 122467899999999988777778899
Q ss_pred EEEECCCCceeee-ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 346 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 346 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
.+||. +++.... ...+...+.+++++++|.++++...++ |.+||.. +. +..+........+.++.+ ++|.+.++
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 99998 6654322 233446789999999998766664544 9999983 33 334433333457889999 88887777
Q ss_pred EecC-eEEEEE
Q 011256 424 ASAD-IRVYQV 433 (490)
Q Consensus 424 ~~~d-i~v~~~ 433 (490)
...+ +..++.
T Consensus 283 ~~~~~l~~~~~ 293 (299)
T 2z2n_A 283 MECDKIGKLTL 293 (299)
T ss_dssp ETTTEEEEEEE
T ss_pred ecCCcEEEEEc
Confidence 6544 555554
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.60 E-value=4e-13 Score=129.21 Aligned_cols=267 Identities=11% Similarity=0.066 Sum_probs=182.0
Q ss_pred CCCEEEEEeC-C----CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe----------CCCcEEEEeCCCCC
Q 011256 198 SKDVIATGGV-D----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDG 262 (490)
Q Consensus 198 ~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~ 262 (490)
+++.+++... + +.|.++|..+++.+.++.....+ .+.++|||++|+++. .++.|.++|..+.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~- 159 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF- 159 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-
Confidence 4555544433 2 69999999999999998865666 899999999887776 3678999999886
Q ss_pred ccceeeeeccc-------ccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 263 NYDCKHTLKDH-------TAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 263 ~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
+.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+..+... . +....|++
T Consensus 160 --~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~------g---~~~~~p~g 228 (426)
T 3c75_H 160 --LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP------D---CYHIFPAS 228 (426)
T ss_dssp --CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC------S---EEEEEEEE
T ss_pred --cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC------C---ceeeccCC
Confidence 444443211 123457899999999999874 578999999999998887642 1 12334433
Q ss_pred -cEEEEEcCCCcEEEEECCCCceeee----ecCCCCCe-EEEEEcCCCCEEEEEeCCC-EEEEECCCCcc--eeeeecCC
Q 011256 334 -LILGTGTSEALVKIWDVKSQANVAK----FDGHVGAV-TAISFSENGYYLATAAHDG-VKLWDLRKLKN--FRSFESSD 404 (490)
Q Consensus 334 -~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~--~~~~~~~~ 404 (490)
..+++.+.||.+.+.+..+++.... +.....++ ..+.|.+++..++..+..+ |.+.|+..... +..+....
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~ 308 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT 308 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc
Confidence 5556666788888888755554421 22112222 2356788888777767666 99999865432 12221100
Q ss_pred --------CCCCeeEEEEcCCCCEEEEEec------------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 405 --------SETPTNSVDFDHSGSYLAVASA------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 405 --------~~~~i~~i~~s~~~~~l~~~~~------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
.......+.+++++..+++... .+.++|. .+.+.+..+.. .....++.|+|||
T Consensus 309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~----~T~kvv~~I~v---g~~P~gia~spDg 381 (426)
T 3c75_H 309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA----ETGERINKIEL---GHEIDSINVSQDA 381 (426)
T ss_dssp TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET----TTCCEEEEEEE---EEEECEEEECCSS
T ss_pred ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC----CCCeEEEEEEC---CCCcCeEEEccCC
Confidence 0112234789999988877642 2777776 55666666654 3457899999999
Q ss_pred C-eEEEEe-CCCcEEEecCCCCC
Q 011256 465 K-YIAVGS-MDRNLRVFGLPGND 485 (490)
Q Consensus 465 ~-~l~s~~-~dg~v~iw~~~~~~ 485 (490)
+ +++++. .++.|.++|+.+.+
T Consensus 382 ~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 382 EPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp SCEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEEcCCCCeEEEEECCCCC
Confidence 9 888888 59999999998764
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=2.5e-13 Score=142.59 Aligned_cols=274 Identities=13% Similarity=0.051 Sum_probs=171.8
Q ss_pred CCCCEEEEEeCCCc---EEEE--eCC---CCcEEEEe------ccCccCEEEEEEeeCCCEEEEEeCC-----CcEEEEe
Q 011256 197 YSKDVIATGGVDTN---AVLF--DRP---SGQIVTTL------SGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQ 257 (490)
Q Consensus 197 ~~~~~l~~~~~dg~---i~iw--d~~---~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd 257 (490)
|+|++++....++. -.+| +.. .+.....+ .+|...+..++|+|||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78887776554332 3444 443 33322221 2333468899999999998877654 4699999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCe--------------EEEEeCCCCeE--EEEeecCCCCCCC
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT--------------WCFYDLSSGIC--LTQVSDAGTDGRP 321 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~--~~~~~~~~~~~~~ 321 (490)
+.++. .+.. ..+...+..++|+|+ +.|+.++.++. |++|++.++.. ...+. ...+.
T Consensus 196 l~tg~---~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~---~~~~~ 267 (741)
T 1yr2_A 196 VADGK---PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA---TPELP 267 (741)
T ss_dssp TTTCC---EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC---CTTCT
T ss_pred CCCCC---CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec---cCCCC
Confidence 98863 2221 112222357899999 99988887654 88999987652 22222 11222
Q ss_pred CCceEEEEcCCCcEEEEEcCCC-----cEEEEECCCC--ceeeeecCCCCCeEEEEEcCCCCEEEEEeCC----C-EEEE
Q 011256 322 EGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHD----G-VKLW 389 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----~-i~iw 389 (490)
..+..+.|+|||++|+..+.++ .|++||+.++ ++...+..+...+.... +|+|..|+..+.. . |.+|
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEE
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEE
Confidence 3578999999999888776543 8999999876 31445554555555553 4888888777653 2 9999
Q ss_pred ECCCCc-ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe
Q 011256 390 DLRKLK-NFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY 466 (490)
Q Consensus 390 d~~~~~-~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 466 (490)
|+.++. ....+... ....+..+.++ ++.++++...+ .+||.++.. ......+... ..+.+..+.++|++..
T Consensus 347 d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~---g~~~~~l~~~-~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD---GKPAGAVSLP-GIGSASGLSGRPGDRH 420 (741)
T ss_dssp ECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT---SCEEEECBCS-SSCEEEEEECCBTCSC
T ss_pred eCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC---CCceeeccCC-CCeEEEEeecCCCCCE
Confidence 998752 33333322 23456677777 55666666666 677776532 2233333321 2567889999999886
Q ss_pred EEEE----eCCCcEEEecCCCCC
Q 011256 467 IAVG----SMDRNLRVFGLPGND 485 (490)
Q Consensus 467 l~s~----~~dg~v~iw~~~~~~ 485 (490)
|+.. ...+.|++||+.+++
T Consensus 421 l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 421 AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEcCCCCCCEEEEEECCCCc
Confidence 6633 234789999987653
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.57 E-value=6.4e-14 Score=132.87 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=134.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-----------IVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
.++.+++++...++++|+.++ +++|++.+.. ..... .+.. |+.++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 5669754322 11122 3556 999999 89999998 889999999
Q ss_pred CCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 258 GSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 258 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
+.+.. .......|...+.++.+.+. .+++++.||.|.+||+.++.... .. ..|+|++|+|+| ++
T Consensus 113 v~sl~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~--------~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 113 LEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LA--------QNVTSFDVTNSQ--LA 176 (388)
T ss_dssp SSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EE--------ESEEEEEECSSE--EE
T ss_pred chhhh---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-cc--------CCceEEEEcCCc--eE
Confidence 98753 33345567778888877644 38889999999999999887653 22 579999999999 67
Q ss_pred EEcCCCcEEEEECCCCce--eeee------c---CCCCCeEEEEEcCCCCEEEEE
Q 011256 338 TGTSEALVKIWDVKSQAN--VAKF------D---GHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 338 ~g~~dg~i~iwd~~~~~~--~~~~------~---~~~~~i~~l~~s~~~~~l~~~ 381 (490)
.|..||.+++|+...+.. ..++ . +|...|.+|.|.+++.++++-
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 889999999999887765 5555 2 367889999999999998874
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=3.1e-12 Score=119.53 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=156.6
Q ss_pred ccCEEEEEEeeCCCEEEE-------EeCCCcEEEEeCCCCCccceeeeec-----ccccceEEEEEecC-CCEEEEEECC
Q 011256 229 SKKVTSVKFVTEGDLFLT-------GSADKTVRVWQGSEDGNYDCKHTLK-----DHTAEVQAVTVHAT-NKYFVTASLD 295 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~-~~~l~s~~~d 295 (490)
-....+++|++++.++++ +..++.|.+||..++. .. .+. ++...+.+++++++ ++++ .++..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~ 91 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---KT-VICKPEVNGYGGIPAGCQCDRDANQLF-VADMR 91 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---EE-EEECCEETTEECCEEEEEECSSSSEEE-EEETT
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---EE-EEEecccCCCCCCCceEEEecCCCcEE-EEECC
Confidence 345688999999987777 5678899999976642 21 221 25567899999998 5544 44445
Q ss_pred CeEEEEeCCCCeEEEE-eecCCCCCCCCCceEEEEcCCCcEEEEEcCC---------------CcEEEEECCCCceeeee
Q 011256 296 NTWCFYDLSSGICLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------------ALVKIWDVKSQANVAKF 359 (490)
Q Consensus 296 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------------g~i~iwd~~~~~~~~~~ 359 (490)
+.|.+||.. ++.... .... .......+.+++++++|+++++...+ +.|..||.. ++.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccC-CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 589999998 665432 2111 11112457899999999888776654 567778765 5443322
Q ss_pred cCCCCCeEEEEEc----CCCCEEEEEe-CCC-EEEEECC-CCcc--eeeee-cCCCC-CCeeEEEEcCCCCEEEEEecC-
Q 011256 360 DGHVGAVTAISFS----ENGYYLATAA-HDG-VKLWDLR-KLKN--FRSFE-SSDSE-TPTNSVDFDHSGSYLAVASAD- 427 (490)
Q Consensus 360 ~~~~~~i~~l~~s----~~~~~l~~~~-~d~-i~iwd~~-~~~~--~~~~~-~~~~~-~~i~~i~~s~~~~~l~~~~~d- 427 (490)
.+......++|+ ++++.|+++. .++ |.+||+. .+.. ...+. ..... ..+..++++++|.++++...+
T Consensus 169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 233457889999 9997666554 444 9999976 3321 11111 11112 457889999999988876554
Q ss_pred -eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEE-EeCCCcEEEecCCCC
Q 011256 428 -IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV-GSMDRNLRVFGLPGN 484 (490)
Q Consensus 428 -i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~v~iw~~~~~ 484 (490)
+.+|+... ......+..+ ...+.+++|+++|+.|++ ...++.|..|++...
T Consensus 248 ~i~~~d~~~----g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDG----GQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTC----BSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCC----CcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 66776421 2222333332 457899999999995554 455688999998754
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=1.1e-12 Score=137.70 Aligned_cols=228 Identities=10% Similarity=0.040 Sum_probs=149.4
Q ss_pred CCCCeEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCc--------
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVD-----TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT-------- 252 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~-------- 252 (490)
|...+..++|||||++|+.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33468899999999998877654 35999999999876531 12222357899999 98888887654
Q ss_pred ------EEEEeCCCCCcc-ceeeeecccccceEEEEEecCCCEEEEEECCC-----eEEEEeCCCCeE--EEEeecCCCC
Q 011256 253 ------VRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGIC--LTQVSDAGTD 318 (490)
Q Consensus 253 ------i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~ 318 (490)
|++|++.++... ..+.....+...+..+.|+|+|++|+..+.++ .|++||+.++.. ...+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--- 315 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--- 315 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---
Confidence 889998764311 12222233444688999999999988877544 899999987721 3333322
Q ss_pred CCCCCceEEEEcCCCcEEEEEcC----CCcEEEEECCCC--ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC---EEEE
Q 011256 319 GRPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQ--ANVAKFDGHVGAVTAISFSENGYYLATAAHDG---VKLW 389 (490)
Q Consensus 319 ~~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iw 389 (490)
...+... ++|+|..|+..+. ++.|.+||+.++ .....+..+...+..+.|+ ++.++++...++ |.++
T Consensus 316 --~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 316 --LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp --SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred --CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 1233333 3488887777665 345999999875 3333344445567778887 566777777776 4455
Q ss_pred ECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEE
Q 011256 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424 (490)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 424 (490)
|+. +.....+..+. ...+..+.++|++..|+..
T Consensus 392 ~~~-g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 392 DLD-GKPAGAVSLPG-IGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp ETT-SCEEEECBCSS-SCEEEEEECCBTCSCEEEE
T ss_pred eCC-CCceeeccCCC-CeEEEEeecCCCCCEEEEE
Confidence 553 44444444321 4567889999998765543
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=2.3e-12 Score=121.65 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=171.4
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccCc-------cCEEEEEEeeCCCEEEEEeC--CCc
Q 011256 192 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGHS-------KKVTSVKFVTEGDLFLTGSA--DKT 252 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~s~--dg~ 252 (490)
.+.++|+|++++++. .++.|.+||..+++.+.++.... .....+.|+|||++++++.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999887765 36789999999999988775321 23457899999999888864 689
Q ss_pred EEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCC-CeEEEEeecCCCCCCCCCce-EEEE-
Q 011256 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYT-SAAF- 329 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~-~~~~- 329 (490)
|.++|+.+. +.+.++.... . ...+......+++.+.||.+.+.++.. ++...... .........+. ...|
T Consensus 162 VsVID~~t~---~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 162 VGVVDLEGK---AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEETTTT---EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEE
T ss_pred EEEEECCCC---cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeE
Confidence 999999886 5555553211 1 222333456788889999999999986 55432221 11111112221 2355
Q ss_pred cCCCcEEEEEcCCCcEEEEECCCCc--eeeeec---------C-CCCCeEEEEEcCCCCEEEEEeC----------CC-E
Q 011256 330 HPDGLILGTGTSEALVKIWDVKSQA--NVAKFD---------G-HVGAVTAISFSENGYYLATAAH----------DG-V 386 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~~~~l~~~~~----------d~-i 386 (490)
.++|++++ .+.+|.|+++|+.++. .+..+. + ..+.+..+++++++..+++... .+ |
T Consensus 235 ~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V 313 (386)
T 3sjl_D 235 QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 313 (386)
T ss_dssp TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred cCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEE
Confidence 46786665 4558999999997654 232222 0 1234456788999888877642 13 9
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCC-EEEEEec-C--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcC
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGP 462 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 462 (490)
.++|+.+.+.+..+... ..+..+.++++++ +|+++.. + +.|+|. ...+.+.++... +..+.+.+++
T Consensus 314 ~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~----~t~k~~~~i~~~---~~p~~l~~s~ 383 (386)
T 3sjl_D 314 VVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDA----ESGEELRSVNQL---GHGPQVITTA 383 (386)
T ss_dssp EEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEET----TTCCEEEEECCC---CSSCCEEEEC
T ss_pred EEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEEC----CCCcEEEEecCC---CCCceeEECC
Confidence 99999999999998873 4788999999997 7777543 2 888887 556677776653 3345566666
Q ss_pred C
Q 011256 463 D 463 (490)
Q Consensus 463 ~ 463 (490)
|
T Consensus 384 d 384 (386)
T 3sjl_D 384 D 384 (386)
T ss_dssp C
T ss_pred c
Confidence 5
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=1.6e-11 Score=119.01 Aligned_cols=239 Identities=10% Similarity=0.066 Sum_probs=159.4
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCccc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYD 265 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~ 265 (490)
.....|+|+++++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3678999999999888887789999999988776655554333 33 99999999998888766 78888876542111
Q ss_pred eeeeecc-cccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC--ceEEEEcC-CCcEEEEEcC
Q 011256 266 CKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG--YTSAAFHP-DGLILGTGTS 341 (490)
Q Consensus 266 ~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~-~~~~l~~g~~ 341 (490)
....+.. ....+.+++++|++..|+.+..++.|..||..++....... ....+.... ...++|+| ++.++++...
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~-~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQ-LELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEE-CCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEec-ccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 1111112 44667899999966666667778999999998776432211 001111111 23899999 5677777777
Q ss_pred CCcEEEEECCCCceeeeecCC---------------CCCeEEEEEcCCCCEEEEEe-CCC-EEEEECCCCcceeeeecCC
Q 011256 342 EALVKIWDVKSQANVAKFDGH---------------VGAVTAISFSENGYYLATAA-HDG-VKLWDLRKLKNFRSFESSD 404 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~l~~s~~~~~l~~~~-~d~-i~iwd~~~~~~~~~~~~~~ 404 (490)
++.|+.||.... +..+.++ -.....++|+++|+++++-+ .+. |+.||+.++..........
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~ 365 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD 365 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence 889999997643 2233222 13478999999999666665 555 9999987665432222100
Q ss_pred ------------CCCCeeEEEEcCCCCEEEEEecCeEEE
Q 011256 405 ------------SETPTNSVDFDHSGSYLAVASADIRVY 431 (490)
Q Consensus 405 ------------~~~~i~~i~~s~~~~~l~~~~~di~v~ 431 (490)
.-.....++++++|.++++-..+-+|.
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 013578999999977666666553443
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=7.5e-11 Score=109.07 Aligned_cols=233 Identities=10% Similarity=0.044 Sum_probs=163.5
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEE-EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
...+.++++++++.++++...++.|..||.. ++... .+......+.++++.++|.++++...++.|..|+.. +. .
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~--~ 136 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT--I 136 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--E
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC--E
Confidence 3578899999999988877768889999987 65532 233344678999999999988877778899999876 31 1
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
....+......+.++++.++++.+++...++.|..||. ++.... +... .....+..++++++|.+.++....+.|
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~---~~~~~~~~i~~d~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLP---TNAAAPVGITSGNDGALWFVEIMGNKI 211 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS---STTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCC---CCCCCcceEEECCCCCEEEEccCCCEE
Confidence 11223334567899999999997776666789999998 555443 2211 122567899999999888877777889
Q ss_pred EEEECCCCceeee-ecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 346 KIWDVKSQANVAK-FDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 346 ~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
.+||. +++.... +......+.+++++++|++.++...++ |..||.. +. +..+........+.++.++++|.+.++
T Consensus 212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-IQEYQLQTENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-EEEEECCccCCccceeEeCCCCCEEEE
Confidence 99998 4443332 233456789999999998666665544 9999983 33 233333322456889999999987666
Q ss_pred EecCeEEEEE
Q 011256 424 ASADIRVYQV 433 (490)
Q Consensus 424 ~~~di~v~~~ 433 (490)
.. . .|+.+
T Consensus 289 ~~-~-~i~~~ 296 (300)
T 2qc5_A 289 LK-C-KIGKL 296 (300)
T ss_dssp CS-S-EEEEE
T ss_pred cc-C-ceEEe
Confidence 55 5 55544
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.51 E-value=1.9e-11 Score=113.41 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=152.6
Q ss_pred CeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 189 GIVSLDIHYSK-DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 189 ~I~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
-.-+..|++++ .++++...++.|+.||..++... .+. ....+.+++++++|+++++ . ++.|.+||..++. ...+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~-~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS-AVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE-EEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc-EEEE
Confidence 34578899954 46666667899999999877653 332 4567999999999995554 4 5679999987642 1222
Q ss_pred eeecc--cccceEEEEEecCCCEEEEEEC-----------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc
Q 011256 268 HTLKD--HTAEVQAVTVHATNKYFVTASL-----------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 334 (490)
Q Consensus 268 ~~~~~--h~~~v~~l~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (490)
..... ....++.++++|+|+++++... .+.|..++.. +......... .....++|+|+++
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~------~~pngi~~spdg~ 161 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQV------DISNGLDWSLDHK 161 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEE------SBEEEEEECTTSC
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecc------ccccceEEcCCCC
Confidence 22111 2245889999999997665432 1344444443 3322222111 3457899999998
Q ss_pred EE-EEEcCCCcEEEEEC--CCCce-----eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCC
Q 011256 335 IL-GTGTSEALVKIWDV--KSQAN-----VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDS 405 (490)
Q Consensus 335 ~l-~~g~~dg~i~iwd~--~~~~~-----~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~ 405 (490)
.| ++.+.++.|.+||+ .++.. ...+..+.+....++++++|++.++...++ |.+||..+++.+..+..+
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-- 239 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-- 239 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS--
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC--
Confidence 65 45566789999997 45532 222333345678999999998887777766 999999988888888765
Q ss_pred CCCeeEEEEc-CCCCEEEEEec
Q 011256 406 ETPTNSVDFD-HSGSYLAVASA 426 (490)
Q Consensus 406 ~~~i~~i~~s-~~~~~l~~~~~ 426 (490)
...+++++|. |+++.|++++.
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEeCCCCCEEEEEcC
Confidence 4578999998 88888777664
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.49 E-value=7.9e-11 Score=110.70 Aligned_cols=222 Identities=12% Similarity=0.068 Sum_probs=149.6
Q ss_pred eEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 190 IVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 190 I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
..+..|+|++. ++++...++.|..||..+++.. .+. ....+.++.|+++|+++++. .+ .|.+||..++. ...+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~-~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV-LTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-EEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-EEEEe
Confidence 46788999754 6666667889999999877543 333 34679999999999876654 44 49999987642 12221
Q ss_pred eec--ccccceEEEEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE-E
Q 011256 269 TLK--DHTAEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT-G 339 (490)
Q Consensus 269 ~~~--~h~~~v~~l~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g 339 (490)
... .....+.++.++|+|+++++... .+.|..++ ++......... .....++|+|+++.++. .
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~------~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI------SIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE------SSEEEEEECTTSCEEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC------cccCCeEEcCCCCEEEEEE
Confidence 111 11246889999999997765542 24566666 45443322211 34578999999986654 4
Q ss_pred cCCCcEEEEECC--CC-c-----eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCee
Q 011256 340 TSEALVKIWDVK--SQ-A-----NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN 410 (490)
Q Consensus 340 ~~dg~i~iwd~~--~~-~-----~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~ 410 (490)
+.++.|.+||+. ++ . ....+......+..++++++|.+.++...++ |.+||. +++.+..+... ...+.
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~--~~~~~ 274 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTT 274 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC--CCCcE
Confidence 567899999986 55 3 1222333345678899999998777776655 999998 56666666654 45689
Q ss_pred EEEEc-CCCCEEEEEecC
Q 011256 411 SVDFD-HSGSYLAVASAD 427 (490)
Q Consensus 411 ~i~~s-~~~~~l~~~~~d 427 (490)
+++|+ +++..|++++..
T Consensus 275 ~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEESTTSCEEEEEEBC
T ss_pred EEEEecCCCCEEEEEecC
Confidence 99998 888877666543
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.1e-11 Score=115.39 Aligned_cols=223 Identities=10% Similarity=0.083 Sum_probs=154.1
Q ss_pred CeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 189 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 189 ~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
......|+++++ +++++..++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+.. +. ...+
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEE
Confidence 456889999998 6677777899999998 454 34455566779999999999976665566789999875 22 2211
Q ss_pred e-eecc-cccceEEEEEecCCCEEEE----EEC-------------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 268 H-TLKD-HTAEVQAVTVHATNKYFVT----ASL-------------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 268 ~-~~~~-h~~~v~~l~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
. ...+ ....+..+++.|+|+++++ |.. .+.|..||..+++..... .. .....++
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~------~~p~gl~ 194 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL------DHPNGLA 194 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE------SSEEEEE
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC------CCCcceE
Confidence 1 1111 1234678999999998886 332 256888887666543332 11 3467899
Q ss_pred EcCCCcEEEEEcCC------CcEEEEECCCCce--eeee-cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceee
Q 011256 329 FHPDGLILGTGTSE------ALVKIWDVKSQAN--VAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRS 399 (490)
Q Consensus 329 ~~~~~~~l~~g~~d------g~i~iwd~~~~~~--~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~ 399 (490)
|+||++.|+++... +.|.+||+..+.. ...+ ....+....++++++|++.+ +..++|.+||. .++.+..
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTGVCVFDS-DGQLLGH 272 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSEEEEECT-TSCEEEE
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCcEEEECC-CCCEEEE
Confidence 99999977777655 6899999875431 1111 11234556789999999544 44566999998 4666666
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
+... ..+.+++|+++++.|++++.+
T Consensus 273 ~~~~---~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 273 IPTP---GTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EECS---SCCCEEEECTTSCEEEEEETT
T ss_pred EECC---CceeEEEEeCCCCEEEEEcCC
Confidence 6654 258899999999988888776
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.49 E-value=1.3e-11 Score=114.83 Aligned_cols=236 Identities=15% Similarity=0.111 Sum_probs=154.8
Q ss_pred eccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC
Q 011256 225 LSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL 303 (490)
Q Consensus 225 ~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~ 303 (490)
+...........|+++++ +++++..++.|..|+... . ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 333445567899999998 677777889999998732 2 2344445677899999999997666556689999998
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEE----EcC-------------CCcEEEEECCCCceeeeecCCCCCe
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGT----GTS-------------EALVKIWDVKSQANVAKFDGHVGAV 366 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----g~~-------------dg~i~iwd~~~~~~~~~~~~~~~~i 366 (490)
. +......... .......+..++++++|.++++ |.. .+.|+.||..+++..... .....
T Consensus 115 ~-g~~~~~~~~~-~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 115 D-GQAHLLVGRY-AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp T-SCEEEEECEE-TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred C-CCEEEEEecc-CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 6 5432222111 1111134678999999998886 432 256888887666544333 33467
Q ss_pred EEEEEcCCCCEEEEEeCC------C-EEEEECCCCcc--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeec
Q 011256 367 TAISFSENGYYLATAAHD------G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASV 436 (490)
Q Consensus 367 ~~l~~s~~~~~l~~~~~d------~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~ 436 (490)
+.++|+|+++.|+++... + |.+||+..... ...+... ....+..++++++|++.++. .+ +.+|+.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~--- 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-GTGVCVFDS--- 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-SSEEEEECT---
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-CCcEEEECC---
Confidence 889999999977776654 4 99999875431 1112111 13345678999999955544 44 666663
Q ss_pred CCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEec
Q 011256 437 KADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
....+..+... . .+.+++|+++++.|+.++.++ +..++
T Consensus 266 --~g~~~~~~~~~--~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 --DGQLLGHIPTP--G-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp --TSCEEEEEECS--S-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred --CCCEEEEEECC--C-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 33444444432 2 578899999999888888664 44333
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=2.2e-10 Score=109.42 Aligned_cols=238 Identities=10% Similarity=-0.014 Sum_probs=160.1
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccC-------ccCEEEEEEeeCCCEEEEEeC--CCc
Q 011256 192 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT 252 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~--dg~ 252 (490)
.+.++|+|++++++. .++.|.+||..+.+.+..+... ......+.|+|||++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999988875 3678999999988887766432 123457899999999998874 578
Q ss_pred EEEEeCCCCCccceeee-ecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC-ceEEEE
Q 011256 253 VRVWQGSEDGNYDCKHT-LKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG-YTSAAF 329 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 329 (490)
|.++| .++ +.+.. +... .|+.+.|++ ..+++.+.||.+.++|. +++...............+ .....+
T Consensus 150 v~viD-~t~---~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~ 220 (373)
T 2mad_H 150 VGLVV-QGG---SSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred EEEEE-CCC---CEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee
Confidence 99999 775 44444 3321 124455655 46677788999999999 8776643321000000111 122445
Q ss_pred cCCCcEEEEEcCCCcEEEEECCCCc--eeeeecC----------CCCCeEEEEEcCCCCEEEEEeC----------CC-E
Q 011256 330 HPDGLILGTGTSEALVKIWDVKSQA--NVAKFDG----------HVGAVTAISFSENGYYLATAAH----------DG-V 386 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~----------~~~~i~~l~~s~~~~~l~~~~~----------d~-i 386 (490)
.+++..++..+..+.+.+.|+..+. .+..+.. .......+.++|++..++++.. .+ |
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 6655544444577899999997552 2222211 1223445789999888877643 23 9
Q ss_pred EEEECCCCcceeeeecCCCCCCeeEEEEcCCCC-EEEEEec-C--eEEEEEeecCCcceEeee
Q 011256 387 KLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKT 445 (490)
Q Consensus 387 ~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~ 445 (490)
.++|+.+.+.+..+.. ......+.|+|+|+ .++++.. + +.|||. ..++.+..
T Consensus 301 ~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~----~t~~vv~~ 356 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA----GAGDQDQS 356 (373)
T ss_pred EEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC----CCCCEEee
Confidence 9999999999888876 34689999999999 6777653 3 888887 44555554
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=1e-10 Score=113.31 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=153.0
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCC--eEEEEeCCCCe
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSGI 307 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 307 (490)
.....++|+++++++++...++.|++||..++ ........ ..... ++|+++++.|++++.++ .|.+|+...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 35789999999998888777899999999864 22222222 22233 99999999999988866 79999987665
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeee----ecCCCCCe--EEEEEcCC-CCEEEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAK----FDGHVGAV--TAISFSEN-GYYLAT 380 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~l~~s~~-~~~l~~ 380 (490)
....+... .......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++
T Consensus 206 ~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQL-GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeec-cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 43333110 011225678899999544455567788999999987753322 22222222 39999996 444444
Q ss_pred EeCCC-EEEEECCCCcceeeeecCC-------------CCCCeeEEEEcCCCCEEEEEe-cC--eEEEEEeecCCcceEe
Q 011256 381 AAHDG-VKLWDLRKLKNFRSFESSD-------------SETPTNSVDFDHSGSYLAVAS-AD--IRVYQVASVKADWNCI 443 (490)
Q Consensus 381 ~~~d~-i~iwd~~~~~~~~~~~~~~-------------~~~~i~~i~~s~~~~~l~~~~-~d--i~v~~~~~~~~~~~~~ 443 (490)
...++ |+.||.... ...+.... .-.....++++++|.++++-+ .+ |+.|++. ... +
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~----~G~-v 357 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL----DGY-V 357 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT----TTE-E
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC----CCE-E
Confidence 44445 999987643 22222111 013478999999999666655 45 6666531 122 1
Q ss_pred eeecCC-------------CCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 444 KTFPDL-------------SGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 444 ~~~~~~-------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
..+.++ ........++++++|.++++-..++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 222111 01245889999999888888888888988775
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.8e-10 Score=106.65 Aligned_cols=228 Identities=13% Similarity=0.146 Sum_probs=145.3
Q ss_pred CccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC
Q 011256 228 HSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG 306 (490)
Q Consensus 228 h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~ 306 (490)
+..-.-+..|+++ +.++++...++.|..||..++. . ..+ .....+.+++++++++++++ . ++.|.+||..++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~---~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ---V-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---E-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc---E-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 3444568899985 4566677778999999987742 2 222 24567999999999995554 3 568999999888
Q ss_pred eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-----------CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCC
Q 011256 307 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-----------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENG 375 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 375 (490)
......... .......+..++++|+|+++++... .+.|+.+|.. ++.. .+.......+.++|+|++
T Consensus 84 ~~~~~~~~~-~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 84 SAVVLATVD-NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp EEEEEEECC-TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTS
T ss_pred cEEEEEecC-CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCC
Confidence 754433221 1111245788999999997765422 2344444442 3332 232233456899999999
Q ss_pred CEEEEEeC-CC-EEEEECC--CCcce--eeee-cCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeee
Q 011256 376 YYLATAAH-DG-VKLWDLR--KLKNF--RSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTF 446 (490)
Q Consensus 376 ~~l~~~~~-d~-i~iwd~~--~~~~~--~~~~-~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~ 446 (490)
+.|+.+.. ++ |.+||+. ++... ..+. .......+..++++++|++.++.... |.+|+. .+...+..+
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~----~tG~~~~~i 236 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP----VTGKRLQTV 236 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT----TTCCEEEEE
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC----CCceEEEEE
Confidence 87766554 34 9999873 44321 1121 11113457889999999877776655 555553 224455555
Q ss_pred cCCCCCcceEEEEEc-CCCCeEEEEe
Q 011256 447 PDLSGTGKATCVKFG-PDAKYIAVGS 471 (490)
Q Consensus 447 ~~~~~~~~v~~~~~s-~~~~~l~s~~ 471 (490)
... ...+++++|. |+++.|+.++
T Consensus 237 ~~p--~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 237 KLP--VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp ECS--SSBEEEEEEESGGGCEEEEEE
T ss_pred ECC--CCCceEEEEeCCCCCEEEEEc
Confidence 443 4578999998 8888766554
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=8.2e-12 Score=118.43 Aligned_cols=176 Identities=16% Similarity=0.084 Sum_probs=130.1
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC--------ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG--------NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
.++.+++++...++++|+.++ +.+|++.... ........ .+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 5669864321 01221222 3556 999999 89999998 889999999
Q ss_pred CCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 011256 303 LSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
+.+.......... ...+.++.+.+.. +++++.||.|.+||+.++.... +...|+|++|+|+| ++.|.
T Consensus 113 v~sl~~~~~~~~~-----~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 113 LEELSEFRTVTSF-----EKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp SSSTTCEEEEEEC-----SSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred chhhhccCcccee-----ecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9876544433322 2457777666542 8888999999999999877643 34589999999999 67788
Q ss_pred CCC-EEEEECCCCcc--eeeeec----C---CCCCCeeEEEEcCCCCEEEEEe
Q 011256 383 HDG-VKLWDLRKLKN--FRSFES----S---DSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 383 ~d~-i~iwd~~~~~~--~~~~~~----~---~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
.|+ +++|+...... ...+.. . .+...|.++.|.+++.++++-+
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 887 99998877664 444521 1 2367899999999999998754
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.39 E-value=7e-11 Score=113.64 Aligned_cols=240 Identities=11% Similarity=0.060 Sum_probs=165.3
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccC-------ccCEEEEEEeeCCCEEEEEeC--CCc
Q 011256 192 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT 252 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~--dg~ 252 (490)
.+.++|++++++++. .++.|.++|..+++.+.++.-. ......+.|+|||++++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999887775 3678999999999998877521 123457899999999998874 578
Q ss_pred EEEEeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCC-ceEEEEc
Q 011256 253 VRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEG-YTSAAFH 330 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~ 330 (490)
|.+.|+.+. +.+..+.... +....|++ ..+++.+.||.+.+.+..+++...... ........+ ...+.+.
T Consensus 202 VsVID~~t~---kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGK---TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEETTTT---EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTSCBCSCCEEC
T ss_pred EEEEECCCC---eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCCceeeEeeec
Confidence 999999886 4555544211 12334443 667778889999888886665443211 000000111 1235678
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCcee--eeecC----------CCCCeEEEEEcCCCCEEEEEeC----------CC-EE
Q 011256 331 PDGLILGTGTSEALVKIWDVKSQANV--AKFDG----------HVGAVTAISFSENGYYLATAAH----------DG-VK 387 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~----------~~~~i~~l~~s~~~~~l~~~~~----------d~-i~ 387 (490)
+++..++..+..+.|.+.|+..+... ..+.. .......++++|++..+++... .+ |.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 88887777778899999998765321 11110 0112234789999887776642 23 99
Q ss_pred EEECCCCcceeeeecCCCCCCeeEEEEcCCCC-EEEEEec-C--eEEEEEeecCCcceEeeee
Q 011256 388 LWDLRKLKNFRSFESSDSETPTNSVDFDHSGS-YLAVASA-D--IRVYQVASVKADWNCIKTF 446 (490)
Q Consensus 388 iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~-d--i~v~~~~~~~~~~~~~~~~ 446 (490)
++|+.+.+.+..+... .....+.|+|+|+ ++++... + +.|+|. .+++.+..+
T Consensus 354 VID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~----~t~kvv~tI 409 (426)
T 3c75_H 354 VLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDA----ATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEET----TTCCEEEEE
T ss_pred EEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEEC----CCCCEEEEe
Confidence 9999999999988763 3588999999999 8888874 3 999997 666777665
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=1.4e-09 Score=102.17 Aligned_cols=223 Identities=14% Similarity=0.106 Sum_probs=142.2
Q ss_pred EEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 011256 232 VTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 310 (490)
Q Consensus 232 v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 310 (490)
..+..|+|++ .++++...++.|..||..++ . ...+. ....+.++.+.++++++++. . ..|.+||..++....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG---R-KTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT---E-EEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC---c-EEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 4577899975 46666667889999998764 2 22222 34579999999999877654 4 459999998887543
Q ss_pred EeecCCCCCCCCCceEEEEcCCCcEEEEEcC------CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-
Q 011256 311 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH- 383 (490)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~- 383 (490)
..... .......+..+.++|+|+++++... .+.|..+| +++.. .+.........++|+|+|+.|+.+..
T Consensus 124 ~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELE-SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSS-TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCC-CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 32211 1111245789999999987665432 24566666 45433 23223345789999999987766654
Q ss_pred CC-EEEEECC--CC-cce--eeee-cCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcc
Q 011256 384 DG-VKLWDLR--KL-KNF--RSFE-SSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK 454 (490)
Q Consensus 384 d~-i~iwd~~--~~-~~~--~~~~-~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~ 454 (490)
++ |.+||+. ++ ... ..+. .......+..++++++|.+.++...+ +.+|+. ....+..+... ...
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-----~g~~~~~i~~~--~~~ 272 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-----DGNHIARYEVP--GKQ 272 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-----TCCEEEEEECS--CSB
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-----CCCEEEEEECC--CCC
Confidence 34 9999986 44 221 1221 11113456789999999877766444 656553 23333444332 446
Q ss_pred eEEEEEc-CCCCeEEEEeC
Q 011256 455 ATCVKFG-PDAKYIAVGSM 472 (490)
Q Consensus 455 v~~~~~s-~~~~~l~s~~~ 472 (490)
+++++|+ ++++.|++++.
T Consensus 273 ~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 273 TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEEESTTSCEEEEEEB
T ss_pred cEEEEEecCCCCEEEEEec
Confidence 8999998 88887765543
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=8.1e-11 Score=122.40 Aligned_cols=240 Identities=14% Similarity=0.106 Sum_probs=153.1
Q ss_pred cCCCCCeEEEEecCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCc------
Q 011256 184 KTSKPGIVSLDIHYSKDVIATGG-----VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKT------ 252 (490)
Q Consensus 184 ~~h~~~I~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~------ 252 (490)
..|...+..++|||||++||.+. ....|++||+.+++.+.... +......++|+ ||+.|+.++.+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 34556788999999999888543 23579999999998654311 11113578899 9999998887743
Q ss_pred -------EEEEeCCCCCc-cceeeeecc-cccceEEEEEecCCCEEEEEEC----CCeEEEEeCCCCe-EEEEeecCCCC
Q 011256 253 -------VRVWQGSEDGN-YDCKHTLKD-HTAEVQAVTVHATNKYFVTASL----DNTWCFYDLSSGI-CLTQVSDAGTD 318 (490)
Q Consensus 253 -------i~iwd~~~~~~-~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~~~~~~~ 318 (490)
|++|++.+... ..++..... |...+..+.|+|+|++|+.... ++.|+++|+.++. ....+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~--- 279 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD--- 279 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS---
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC---
Confidence 99999877532 123333334 4556788999999998765443 2589999997763 23333322
Q ss_pred CCCCCceEEEEcCCCc-EEEEEcCC---CcEEEEECCCCce--eeeecCCCCCeEEEEEcCCCCEEEEEeC-CC---EEE
Q 011256 319 GRPEGYTSAAFHPDGL-ILGTGTSE---ALVKIWDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAH-DG---VKL 388 (490)
Q Consensus 319 ~~~~~v~~~~~~~~~~-~l~~g~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~---i~i 388 (490)
....... ++++|. +++....+ +.|..+|+.++.. ...+..+...+. .|++++.+|+.... ++ |++
T Consensus 280 --~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 280 --LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp --SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred --CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 1233333 556554 44444443 6799999987654 345555655554 88888888776654 43 899
Q ss_pred EECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC----eEEEEEee
Q 011256 389 WDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD----IRVYQVAS 435 (490)
Q Consensus 389 wd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----i~v~~~~~ 435 (490)
||+... ....+.... ...+..+.+++++..++....+ ..+|.++.
T Consensus 355 ~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 355 FDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp ECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 998744 334443321 3456677778888766655433 55665543
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.38 E-value=1.3e-11 Score=116.87 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=162.3
Q ss_pred cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe----------CCCcEEEEeCCCCCccceeeeeccc------
Q 011256 210 NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS----------ADKTVRVWQGSEDGNYDCKHTLKDH------ 273 (490)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~h------ 273 (490)
.|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+. +.+.++...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---CEEEEEECCCccccc
Confidence 7889999999999998766666 799999999888876 3688999999986 555555422
Q ss_pred -ccceEEEEEecCCCEEEEEEC--CCeEEE--EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEcCCCcEEE
Q 011256 274 -TAEVQAVTVHATNKYFVTASL--DNTWCF--YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSEALVKI 347 (490)
Q Consensus 274 -~~~v~~l~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i 347 (490)
......+.++|+|++++++.. +..+.+ +|..+ +..+... .. ..+.|++ ..+++.+.||.+.+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~------~~---~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA------SC---FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS------SC---CCCEEEETTEEECCCCTTSCEE
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC------Cc---eEEccCCCeEEEEEcCCCCEEE
Confidence 123567999999999998875 467888 99877 4444321 11 1223443 34556667888888
Q ss_pred EECCC-----Cceee----eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCc--ceeeeecCC--------CCCC
Q 011256 348 WDVKS-----QANVA----KFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLK--NFRSFESSD--------SETP 408 (490)
Q Consensus 348 wd~~~-----~~~~~----~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~--~~~~~~~~~--------~~~~ 408 (490)
.|+.+ ++... .+.....+. . .+++..++..+.+.|.+.|+.... .+..+.... ....
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 88876 44331 121123343 3 445444444444449999986532 222222110 0111
Q ss_pred eeEEEEcCCCCEEEEEe----c-------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCe-EEEEe-CCCc
Q 011256 409 TNSVDFDHSGSYLAVAS----A-------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKY-IAVGS-MDRN 475 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~----~-------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~-~dg~ 475 (490)
...+.++|+++.++++. . ++.++|. ...+.+..+.. .....++.|+|||++ +++.. .++.
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~----~t~~vv~~i~v---g~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES----SSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC----CCCeEEEEEEC---CCCcceEEECCCCCEEEEEccCCCCe
Confidence 22378999999888752 2 2668887 45556666554 336789999999985 55555 4999
Q ss_pred EEEecCCCCC
Q 011256 476 LRVFGLPGND 485 (490)
Q Consensus 476 v~iw~~~~~~ 485 (490)
|.++|+.+.+
T Consensus 339 VsVID~~t~k 348 (368)
T 1mda_H 339 LDIYDAASDQ 348 (368)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCc
Confidence 9999997654
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=9.5e-11 Score=121.89 Aligned_cols=240 Identities=12% Similarity=0.123 Sum_probs=152.3
Q ss_pred cCccCEEEEEEeeCCCEEEEEe-----CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCe----
Q 011256 227 GHSKKVTSVKFVTEGDLFLTGS-----ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNT---- 297 (490)
Q Consensus 227 ~h~~~v~~l~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~---- 297 (490)
+|...+..++|||||++|+.+. .+..|++||+.++. .+.. ..+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCcc-ccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 3555788999999999887432 33579999999863 2221 1111113567899 9999999887743
Q ss_pred ---------EEEEeCCCCeE--EEEeecCCCCC-CCCCceEEEEcCCCcEEEEEcC----CCcEEEEECCCCc-eeeeec
Q 011256 298 ---------WCFYDLSSGIC--LTQVSDAGTDG-RPEGYTSAAFHPDGLILGTGTS----EALVKIWDVKSQA-NVAKFD 360 (490)
Q Consensus 298 ---------i~iwd~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~~-~~~~~~ 360 (490)
|++|++.++.. ...+. ... +...+..+.|+|||++|+.... ...|+++|+.++. ....+.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred ccccCCCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 99999987653 22222 112 2345678999999998765432 3589999998763 344555
Q ss_pred CCCCCeEEEEEcCCCCEEEE-EeCC---C-EEEEECCCCcc--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----e
Q 011256 361 GHVGAVTAISFSENGYYLAT-AAHD---G-VKLWDLRKLKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD-----I 428 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~-~~~d---~-i~iwd~~~~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i 428 (490)
.+....... |+++|..|+. +..+ + |..+|+.++.. ...+..+ ...+. .|++++++|+....+ +
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 555555555 5566555544 4433 3 89999987654 2344433 22333 888999988777654 4
Q ss_pred EEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC----CcEEEecCCCCC
Q 011256 429 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD----RNLRVFGLPGND 485 (490)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~ 485 (490)
.+|+++ ......+... ..+.+..+.+++++..|+....+ +.|+.|++.+++
T Consensus 353 ~~~d~~-----g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYE-----GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTT-----SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECC-----CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 555442 1222222221 24567788888888877766555 789999987653
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=4.9e-10 Score=106.05 Aligned_cols=241 Identities=10% Similarity=0.004 Sum_probs=150.6
Q ss_pred cCEEEEEEeeCCCEEEEEe--CCCcEEEEeCCCCCcccee----eeecccccceEEEEEecCCCEEEEEEC-----CCeE
Q 011256 230 KKVTSVKFVTEGDLFLTGS--ADKTVRVWQGSEDGNYDCK----HTLKDHTAEVQAVTVHATNKYFVTASL-----DNTW 298 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~~~-----dg~i 298 (490)
..+..++++++|+++++.. .++.++||.+.. +..... .....|...+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5689999999999888864 234355665543 211100 111235568999999999876665433 5799
Q ss_pred EEEeCCCCeEEEEeecCCC-CCCCCCceEEEEcCCC-cEEEEEc---CCCcEEEEECCCCceeeeecCCC----------
Q 011256 299 CFYDLSSGICLTQVSDAGT-DGRPEGYTSAAFHPDG-LILGTGT---SEALVKIWDVKSQANVAKFDGHV---------- 363 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~---------- 363 (490)
.+||+.+++.+..+..... ..+...+..+++++++ ..+++.. .++.|.+||+.+++....+.+|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999999987776653211 1222456899999864 4445544 57899999998877665543321
Q ss_pred -------------------CCeEEEEEcCCCCEEEEEeCCC--EEEEECC---CCc-----ceeeeecCCCCCCeeEEEE
Q 011256 364 -------------------GAVTAISFSENGYYLATAAHDG--VKLWDLR---KLK-----NFRSFESSDSETPTNSVDF 414 (490)
Q Consensus 364 -------------------~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~---~~~-----~~~~~~~~~~~~~i~~i~~ 414 (490)
..+..|+|+|+|+.|+++...+ +..++.. ... ....+...........+++
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 2368899999999888887775 5555432 111 0111111011235677999
Q ss_pred cCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 415 DHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 415 s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
+++|.++++...+ |.+|+.. ......... ......+.+++|.+++.++++.+..+.+
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~----~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSA----DRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETT----TTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CCCCCEEEEccCCCeEEEEECC----CCCEEEEEE-CCceecCCeeEECCCCcEEEEeCccccc
Confidence 9999888777665 6666641 222211111 1114468999999999888887655444
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.31 E-value=3.1e-10 Score=107.40 Aligned_cols=235 Identities=8% Similarity=0.043 Sum_probs=150.4
Q ss_pred CCeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCcEEEEec-------cCccCEEEEEEeeCCCEEEEEeC-----CCcE
Q 011256 188 PGIVSLDIHYSKDVIATGG--VDTNAVLFDRPSGQIVTTLS-------GHSKKVTSVKFVTEGDLFLTGSA-----DKTV 253 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~s~-----dg~i 253 (490)
.....++++++|+++++.. .++.+.||.+.+++. ..+. .|...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5788999999999988864 234244554435543 3332 34567999999999886665443 5789
Q ss_pred EEEeCCCCCccceeeeecc------cccceEEEEEecCCCEE-EEEE---CCCeEEEEeCCCCeEEEEeecC-CCC----
Q 011256 254 RVWQGSEDGNYDCKHTLKD------HTAEVQAVTVHATNKYF-VTAS---LDNTWCFYDLSSGICLTQVSDA-GTD---- 318 (490)
Q Consensus 254 ~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l-~s~~---~dg~i~iwd~~~~~~~~~~~~~-~~~---- 318 (490)
.+||+.++ +.+..+.. +...+..+++++++..+ ++-. .++.|.+||+.+++....+... ...
T Consensus 96 ~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 96 VAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp EEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred EEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 99999875 33333321 23456899999865554 4444 5789999999988765544210 000
Q ss_pred -----C--------------CCCCceEEEEcCCCcEEEEEcCCC-cEEEEECC---CCc-----eee--eecCCCCCeEE
Q 011256 319 -----G--------------RPEGYTSAAFHPDGLILGTGTSEA-LVKIWDVK---SQA-----NVA--KFDGHVGAVTA 368 (490)
Q Consensus 319 -----~--------------~~~~v~~~~~~~~~~~l~~g~~dg-~i~iwd~~---~~~-----~~~--~~~~~~~~i~~ 368 (490)
+ ....+..++|+|+|+.|+++...+ .|..++.. .+. ... ...++.+....
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 0 012457899999998888877665 55555532 111 000 11123345678
Q ss_pred EEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 369 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 369 l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
++++++|.++++...++ |.+||..+++........ ....+..++|++++.++++.+..
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEEEECCG
T ss_pred EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEEEeCcc
Confidence 99999999888887776 999998555432222211 13457899999998877776643
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.31 E-value=5.3e-09 Score=99.47 Aligned_cols=229 Identities=10% Similarity=0.056 Sum_probs=151.4
Q ss_pred eCCCEEEE-EeCCCcEEEEeCCCC-Cccceeeeec------c-cccceEEEEEecCCCEEEEEECC------CeEEEEeC
Q 011256 239 TEGDLFLT-GSADKTVRVWQGSED-GNYDCKHTLK------D-HTAEVQAVTVHATNKYFVTASLD------NTWCFYDL 303 (490)
Q Consensus 239 ~~~~~l~s-~s~dg~i~iwd~~~~-~~~~~~~~~~------~-h~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~ 303 (490)
+++++|+. |..++.|.|+|+.+. ...+...++. . ....-..+.+.|+| .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67776555 556789999998653 2334444442 1 11245567788999 77776555 78999999
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-------------------CCCcEEEEECCCCceeeeecCC-C
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------------------SEALVKIWDVKSQANVAKFDGH-V 363 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------------------~dg~i~iwd~~~~~~~~~~~~~-~ 363 (490)
.+++.+..+..... ....-..+.|+|+++.+++.. .+..|.+||+.+++.+.++... .
T Consensus 172 ~T~~v~~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YSFEPLGKWEIDRG--DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTCCEEEECCSBCT--TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CCCeEEEEEccCCC--CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 99999988864311 112234688899999888874 3689999999998888887642 1
Q ss_pred -CCeEEEEE--cCCCCEEEEEeC-----C-C-EEEEECCCCc--ceeeeecCC----------------CCCCeeEEEEc
Q 011256 364 -GAVTAISF--SENGYYLATAAH-----D-G-VKLWDLRKLK--NFRSFESSD----------------SETPTNSVDFD 415 (490)
Q Consensus 364 -~~i~~l~~--s~~~~~l~~~~~-----d-~-i~iwd~~~~~--~~~~~~~~~----------------~~~~i~~i~~s 415 (490)
.....+.| +|+++++++++. . + |.+|....+. ....+.... .......|.++
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23455656 999999888876 4 3 7665543321 111111000 01346889999
Q ss_pred CCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCC------------CCcceEEEEEcCCCCeEEEEe
Q 011256 416 HSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLS------------GTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 416 ~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~ 471 (490)
+||++|+++... |.+|++... .....+..+.... ..+....+.++|||++|++++
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999999776 999998522 2334444443210 011357899999999999998
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=5.4e-10 Score=115.29 Aligned_cols=274 Identities=10% Similarity=0.075 Sum_probs=176.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC-----------EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK-----------VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
+..+++++.++.|+.+|..+|+.+-++...... ...+.+ ++..+++++.|+.|..+|..++ +.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG---~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATG---KEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC---CEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCC---CEE
Confidence 567777778899999999999998887643210 112333 5667888999999999999887 444
Q ss_pred eeeccc-c----cceEEEEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCC-----------------
Q 011256 268 HTLKDH-T----AEVQAVTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDG----------------- 319 (490)
Q Consensus 268 ~~~~~h-~----~~v~~l~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~----------------- 319 (490)
..+..+ . ..+.+--.. .+..+++++. +|.|+.||..+|+.+..+.......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 444332 1 111111011 2445555543 6999999999999988776432210
Q ss_pred ----------CCCCceEEEEcCCCcEEEEEcCCC-------------------cEEEEECCCCceeeeecC--CC-----
Q 011256 320 ----------RPEGYTSAAFHPDGLILGTGTSEA-------------------LVKIWDVKSQANVAKFDG--HV----- 363 (490)
Q Consensus 320 ----------~~~~v~~~~~~~~~~~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~--~~----- 363 (490)
.......++++|++.++++++.++ .|..+|..+|+.+-.+.. |.
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 001123578899888888887664 599999999998877653 21
Q ss_pred --CCeEEEEEcCCC---CEEEEEeCCC-EEEEECCCCcceeeeecCCCC---------C---------------------
Q 011256 364 --GAVTAISFSENG---YYLATAAHDG-VKLWDLRKLKNFRSFESSDSE---------T--------------------- 407 (490)
Q Consensus 364 --~~i~~l~~s~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~---------~--------------------- 407 (490)
.....+....+| ..++.++.++ |+++|..+++.+..+...... .
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 122223333467 6788888888 999999999887665532100 0
Q ss_pred ---CeeEEEEcCCCCEEEEEecC---------------------------------------------eEEEEEeecCCc
Q 011256 408 ---PTNSVDFDHSGSYLAVASAD---------------------------------------------IRVYQVASVKAD 439 (490)
Q Consensus 408 ---~i~~i~~s~~~~~l~~~~~d---------------------------------------------i~v~~~~~~~~~ 439 (490)
.-..++|+|++.++++...+ +..||+.+++..
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 01257889998888886542 444444222222
Q ss_pred ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
|. +.. ...+....+..++..+++++.||.|++||..+++
T Consensus 471 W~----~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 471 WS----VEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EE----EEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ee----cCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 22 211 1223334455677888999999999999998765
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.28 E-value=4.6e-09 Score=99.88 Aligned_cols=222 Identities=10% Similarity=0.095 Sum_probs=150.5
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCC----cEEEEec-------cCccCEEEEEEeeCCCEEEEEeCC------CcEEEEeC
Q 011256 197 YSKDVIA-TGGVDTNAVLFDRPSG----QIVTTLS-------GHSKKVTSVKFVTEGDLFLTGSAD------KTVRVWQG 258 (490)
Q Consensus 197 ~~~~~l~-~~~~dg~i~iwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~s~d------g~i~iwd~ 258 (490)
+++++|+ .|..++.|+++|+.+. +...++. .....-..+..+|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 6777655 4567889999998755 6666663 111234567788999 77776655 78999998
Q ss_pred CCCCccceeeeeccc--c-cceEEEEEecCCCEEEEEE-------------------CCCeEEEEeCCCCeEEEEeecCC
Q 011256 259 SEDGNYDCKHTLKDH--T-AEVQAVTVHATNKYFVTAS-------------------LDNTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h--~-~~v~~l~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~ 316 (490)
.+. +.+.++... . ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+..+....
T Consensus 172 ~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~ 248 (462)
T 2ece_A 172 YSF---EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE 248 (462)
T ss_dssp TTC---CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred CCC---eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence 876 555555422 1 2234588899999888885 36899999999998887776421
Q ss_pred CCCCCCCceEEEE--cCCCcEEEEEc------CCCcEEEEECCCCce--eeee--cC----------------CCCCeEE
Q 011256 317 TDGRPEGYTSAAF--HPDGLILGTGT------SEALVKIWDVKSQAN--VAKF--DG----------------HVGAVTA 368 (490)
Q Consensus 317 ~~~~~~~v~~~~~--~~~~~~l~~g~------~dg~i~iwd~~~~~~--~~~~--~~----------------~~~~i~~ 368 (490)
. ......+.| +|+++++++++ .++.|.+|....++. ...+ .. -......
T Consensus 249 ~---g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 249 E---NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp T---EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred C---CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 1 123445555 99999888877 456887766544321 1111 10 0235788
Q ss_pred EEEcCCCCEEEEEeCCC--EEEEECCCC---cceeeeecCCC------------CCCeeEEEEcCCCCEEEEEe
Q 011256 369 ISFSENGYYLATAAHDG--VKLWDLRKL---KNFRSFESSDS------------ETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 369 l~~s~~~~~l~~~~~d~--i~iwd~~~~---~~~~~~~~~~~------------~~~i~~i~~s~~~~~l~~~~ 425 (490)
|.+++||++|.++.... |.+||+... +.+..+..... ......+.++|+|++|+++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999999998874 999998633 34444443210 11368899999999999998
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=9.9e-10 Score=113.58 Aligned_cols=273 Identities=12% Similarity=0.153 Sum_probs=170.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC----------E-EEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK----------V-TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
+..+++++.++.|+.+|..+|+.+-.+..+... + ..+.+ .+..+++++.|+.|..+|..++ +.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG---~~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTG---QRA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC---CEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCC---CEe
Confidence 667777888899999999999998887643221 1 11222 4567888999999999999887 333
Q ss_pred eeeccc--c---cceEE-EEEecCCCEEEEEE------CCCeEEEEeCCCCeEEEEeecCCCC-----------------
Q 011256 268 HTLKDH--T---AEVQA-VTVHATNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTD----------------- 318 (490)
Q Consensus 268 ~~~~~h--~---~~v~~-l~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~----------------- 318 (490)
..+... . ..+.+ ..+. ++ .+++++ .+|.|..||..+|+.+..+......
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 333221 1 11111 0111 34 444443 3789999999999988777532100
Q ss_pred ---------CCCCCceEEEEcCCCcEEEEEcCCCc-------------------EEEEECCCCceeeeecC--CC-----
Q 011256 319 ---------GRPEGYTSAAFHPDGLILGTGTSEAL-------------------VKIWDVKSQANVAKFDG--HV----- 363 (490)
Q Consensus 319 ---------~~~~~v~~~~~~~~~~~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~--~~----- 363 (490)
+.......++++|++.++++++.++. |..+|..+|+.+-.+.. |.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence 00011235788898889999888764 99999999999877753 21
Q ss_pred --CCeEEEEEcCCCC---EEEEEeCCC-EEEEECCCCcceeeeecCCC--------------------------------
Q 011256 364 --GAVTAISFSENGY---YLATAAHDG-VKLWDLRKLKNFRSFESSDS-------------------------------- 405 (490)
Q Consensus 364 --~~i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~-------------------------------- 405 (490)
.++.......+|. .++.++.+| ++++|.++++.+........
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1222222223565 788888888 99999999987643322110
Q ss_pred -----CCCeeEEEEcCCCCEEEEEecC-----------------------------------------------eEEEEE
Q 011256 406 -----ETPTNSVDFDHSGSYLAVASAD-----------------------------------------------IRVYQV 433 (490)
Q Consensus 406 -----~~~i~~i~~s~~~~~l~~~~~d-----------------------------------------------i~v~~~ 433 (490)
...-..++|+|+..++++...+ +..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 0012237899998888877443 334444
Q ss_pred eecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 434 ASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.+++..|. +..+ ..+....+...+.++++|+.||.|+.||..+++
T Consensus 463 ~tG~~~W~----~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 463 VKQQAAWE----VPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp TTTEEEEE----EEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCeEeE----ccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 22222222 2111 112223455577889999999999999998775
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=124.69 Aligned_cols=254 Identities=17% Similarity=0.143 Sum_probs=138.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeeccccc-c
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTA-E 276 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~-~ 276 (490)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..++. .+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~---~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE---GLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C---CSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc---eeeeeeccCccc
Confidence 578899999999999999999999988876 455555566678788888899999999997753 3323222211 1
Q ss_pred eE-EEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce
Q 011256 277 VQ-AVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN 355 (490)
Q Consensus 277 v~-~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 355 (490)
+. ...+ ..+..+++++.|+.|+.||..+|+.+..+.... ...++|++..+++++.++.|+.||.++++.
T Consensus 83 ~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 83 VQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred cccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---------cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 10 0011 135577888889999999999999877665321 234556888899999999999999999987
Q ss_pred eeeecCCCCCeEEEEEcCCC---CEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCee-EEEEcCCCCEE----EEEec
Q 011256 356 VAKFDGHVGAVTAISFSENG---YYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTN-SVDFDHSGSYL----AVASA 426 (490)
Q Consensus 356 ~~~~~~~~~~i~~l~~s~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~-~i~~s~~~~~l----~~~~~ 426 (490)
+..+..+. .....+..+. ..+++++.++ |..||.++++.+..+.. ..++. ...++++|... +.++.
T Consensus 153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~~~~ 227 (369)
T 2hz6_A 153 RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINVAVE 227 (369)
T ss_dssp CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEEEHH
T ss_pred EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceeeccc
Confidence 76654221 1223333331 4566677777 99999999988777664 33443 34455666432 22332
Q ss_pred CeEEEEEeecC----CcceEeeeecCCCCCcceEEEEEcC--CCCeEEEEeCCCcEEEecCC
Q 011256 427 DIRVYQVASVK----ADWNCIKTFPDLSGTGKATCVKFGP--DAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 427 di~v~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~ 482 (490)
.+.+++...+. ..|.. .. .+.+. +| .+..|+.++.||.|+.++..
T Consensus 228 ~l~~ld~~tG~~~~~~~W~~----~~---~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 228 TLRYLTFMSGEVGRITKWKY----PF---PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSCC----CC---CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred ceeeeehhcCCcccceeeee----cc---Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 24444442222 22211 11 11110 11 23456777778888877765
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=1.5e-09 Score=111.98 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=177.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccC-c----cCEEEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGH-S----KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~----~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~ 266 (490)
.+..|++++.|+.|+.+|..+|+.+..+..+ . ..+.+.-.. .+..+++++. +|.|..||..++. .
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~---~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGE---R 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCC---E
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCc---E
Confidence 3567888889999999999999998887654 1 112211111 2344555543 7899999998873 3
Q ss_pred eeeeccc--------------------------------ccceEEEEEecCCCEEEEEECCC------------------
Q 011256 267 KHTLKDH--------------------------------TAEVQAVTVHATNKYFVTASLDN------------------ 296 (490)
Q Consensus 267 ~~~~~~h--------------------------------~~~v~~l~~~~~~~~l~s~~~dg------------------ 296 (490)
+..+... ......++++|++..++.+..++
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 3333211 11113578889999888887664
Q ss_pred -eEEEEeCCCCeEEEEeecCCCCC----CCCCceEEEEcCCC---cEEEEEcCCCcEEEEECCCCceeeeecCCCC----
Q 011256 297 -TWCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDG---LILGTGTSEALVKIWDVKSQANVAKFDGHVG---- 364 (490)
Q Consensus 297 -~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~---- 364 (490)
.|..+|..+|+.+..+....... .......+....+| ..++.++.+|.|+++|..+|+.+..+.....
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 59999999999988876432110 01223334444577 6899999999999999999998766542110
Q ss_pred -------Ce------------------------EEEEEcCCCCEEEEEeC------------------------------
Q 011256 365 -------AV------------------------TAISFSENGYYLATAAH------------------------------ 383 (490)
Q Consensus 365 -------~i------------------------~~l~~s~~~~~l~~~~~------------------------------ 383 (490)
++ ..++|+|++.++++...
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 01 15688998888777542
Q ss_pred -------------CC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec
Q 011256 384 -------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 384 -------------d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 447 (490)
.+ |..||+.+++....+... .++....+...+..+++++.+ +++|+. .+.+.+..+.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~----~tG~~lw~~~ 515 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHA----ATGEKLWEAP 515 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEEC----CCCceeeeee
Confidence 14 999999999988777653 334445566678888888777 777776 4455555554
Q ss_pred CCCCCcceEEEEEcCCCCeEE-EEeC----------------CCcEEEecCCC
Q 011256 448 DLSGTGKATCVKFGPDAKYIA-VGSM----------------DRNLRVFGLPG 483 (490)
Q Consensus 448 ~~~~~~~v~~~~~s~~~~~l~-s~~~----------------dg~v~iw~~~~ 483 (490)
... .....-+.|..+|+.++ +.+. .+.+.+|.+..
T Consensus 516 ~~~-~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 516 TGT-GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSS-CCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCC-CcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 321 12223455667886544 3222 36788888873
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.24 E-value=7e-10 Score=109.18 Aligned_cols=271 Identities=12% Similarity=0.104 Sum_probs=180.4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEecc---------------------------------Cc------cCEEEEEEee--
Q 011256 201 VIATGGVDTNAVLFDRPSGQIVTTLSG---------------------------------HS------KKVTSVKFVT-- 239 (490)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------------h~------~~v~~l~~~~-- 239 (490)
.+.+|+..|.++|+-+.+++.+..+.- +. +.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 356778889999998888877765520 01 1122344444
Q ss_pred ---CCCEEEEEeC-CCcEEEEeCCCCCccceeeeecc-cccceEEEEE-e-cCCCEEEEEE------------------C
Q 011256 240 ---EGDLFLTGSA-DKTVRVWQGSEDGNYDCKHTLKD-HTAEVQAVTV-H-ATNKYFVTAS------------------L 294 (490)
Q Consensus 240 ---~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~l~s~~------------------~ 294 (490)
||++++.... ++.|.+.|+.+. ++...+.- ....+..+++ . |++.++++++ .
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~---~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVM---KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTT---EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCc---eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 7887776655 557999999886 55553321 2245788887 4 8999998885 2
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-------------------------------
Q 011256 295 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA------------------------------- 343 (490)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg------------------------------- 343 (490)
++.+.++|..+.+...++.... ....++++|+|+++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred CceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 4679999999999988887532 235578999999988887553
Q ss_pred -------cEEEEECCC--Cce-eeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCc------------ceee
Q 011256 344 -------LVKIWDVKS--QAN-VAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLK------------NFRS 399 (490)
Q Consensus 344 -------~i~iwd~~~--~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~------------~~~~ 399 (490)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++... |.++|+.+.+ ....
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 477777776 444 344432 23567899999999999988764 9999999653 1222
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeec------CCcceEeeeecCCCCCcce---EEEEEcCCCCeE
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASV------KADWNCIKTFPDLSGTGKA---TCVKFGPDAKYI 467 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~------~~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l 467 (490)
+.. ......++|+++| ++++...- +.+|+++.. .+....+..+..+...+.. .++.++|||++|
T Consensus 327 v~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 327 PEL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp CBC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred cCC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 222 4568899999999 76666543 889998652 1224556666554221211 123568999999
Q ss_pred EEEeC---CCcE----------EEecCCCCC
Q 011256 468 AVGSM---DRNL----------RVFGLPGND 485 (490)
Q Consensus 468 ~s~~~---dg~v----------~iw~~~~~~ 485 (490)
++++. |+.+ .++|+.+++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 98753 3321 778885543
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.22 E-value=4.5e-10 Score=105.45 Aligned_cols=266 Identities=14% Similarity=0.054 Sum_probs=160.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.+.++...+++. +.+++.+ |..||. +++.+..+...........+. +..+..++.++.|..+|.. + ....
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g---~~~~ 130 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-G---TEKW 130 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-S---CEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-C---CEEE
Confidence 345666666655 4444444 888886 555443333222222233333 5567778888999999987 3 3343
Q ss_pred eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
....+...+.++...+++. ++.++.++.|..+|.. +.....+... ...+.++.+.+++.+.+. + +.|..+
T Consensus 131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-----~~~~~~~~~d~~g~l~v~-t--~~l~~~ 200 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-----DAITSAASIGKDGTIYFG-S--DKVYAI 200 (330)
T ss_dssp EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-----SCCCSCCEECTTCCEEEE-S--SSEEEE
T ss_pred EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-----CCceeeeEEcCCCEEEEE-e--CEEEEE
Confidence 4443444556666666666 5667788999999998 7766665432 134666777778775544 4 779999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCe
Q 011256 349 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADI 428 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di 428 (490)
| .+++....+......+.++.+.++|.+.+....++|..+|. ++.....+... ...+..+.+++++.+ .+++.+.
T Consensus 201 d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g~l-~v~t~~g 275 (330)
T 3hxj_A 201 N-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTDTI-YFGSYDG 275 (330)
T ss_dssp C-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTSCE-EEECTTC
T ss_pred C-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCCeE-EEecCCC
Confidence 9 77777777665556788889988886655444445888874 45555555443 233445666666654 4555553
Q ss_pred EEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 429 RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 429 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
.++.++. .......+... ...+.++...++|. |..++.+|.+++...+...
T Consensus 276 gl~~~d~---~g~~~~~~~~~--~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 276 HLYAINP---DGTEKWNFETG--SWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEEEECT---TSCEEEEEECS--SCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CEEEECC---CCcEEEEEEcC--CccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 4444432 22223333221 34566777777776 5668899999998776544
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=2.3e-08 Score=95.77 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=159.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccC---------ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGH---------SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.+..+++++.++.|..+|..+++.+..+... ...+.+. ...++..+++++.++.|..+|..++ +...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG---~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDG---TVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTC---CEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCC---CEEE
Confidence 3677888888999999999999987766542 1223222 2225567888899999999999876 3333
Q ss_pred eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
............... +..+++++.++.|..+|..+++.+..................... +..+++++.+|.|..+
T Consensus 128 ~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 128 QTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp EEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred EEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 333222111111222 557888889999999999999988777543110000000111222 3467778889999999
Q ss_pred ECCCCceeeeecCCCCC----eE---EEEEcC--CCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCC
Q 011256 349 DVKSQANVAKFDGHVGA----VT---AISFSE--NGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSG 418 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~----i~---~l~~s~--~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~ 418 (490)
|..+++.+......... +. .+...| .+..+++++.++ +..+|..+++....... .....+.. ++
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~--~~ 277 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----GSVNDFIV--DG 277 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----CCEEEEEE--ET
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----CCCCCceE--EC
Confidence 99999887766432100 00 010111 245666666666 99999999887765543 22344444 35
Q ss_pred CEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCC
Q 011256 419 SYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 485 (490)
Q Consensus 419 ~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 485 (490)
..+++++.+ +..++...+ ..+...... ....+..... .+..|+.++.+|.|++||..+++
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG----~~~w~~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGG----VTLWTQSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp TEEEEEETTCCEEEEETTTC----CEEEEECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEcCCCeEEEEECCCC----cEEEeeccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 566666665 666665333 232222211 0111222222 24678888889999999987654
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=5.8e-10 Score=104.71 Aligned_cols=255 Identities=14% Similarity=0.126 Sum_probs=159.2
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccc
Q 011256 195 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHT 274 (490)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~ 274 (490)
+..++ .+.+++.++.|..|| .+++....+..+...+.++...+++. |..++.+ |..||. ++ .....+....
T Consensus 27 ~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g---~~~~~~~~~~ 97 (330)
T 3hxj_A 27 LAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DG---TEKWRFDTKK 97 (330)
T ss_dssp ECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CG---GGGGGSCC--
T ss_pred EccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CC---cEEEEEECCC
Confidence 33344 456677788899999 88888776665555567777766665 4555554 888885 32 2222222222
Q ss_pred cceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc
Q 011256 275 AEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA 354 (490)
Q Consensus 275 ~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 354 (490)
.......+. +..+..++.++.|..+|.. +......... ...+.++...+++. +.+++.++.|..||.. ++
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~-----~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~ 167 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK-----KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT 167 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS-----SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC-----CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC
Confidence 222223333 6677888889999999998 7666555432 13355667777776 5557778999999998 87
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 355 NVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 355 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
.+..+......+.++.+.++|.+++.+ ++|..|| .+++....+... ...+.++..+++|.+.+..... +..++
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t~~~gl~~~~- 241 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAG--YWTVTRPAISEDGTIYVTSLDGHLYAIN- 241 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCS--SCCCSCCEECTTSCEEEEETTTEEEEEC-
T ss_pred EeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccC--CcceeceEECCCCeEEEEcCCCeEEEEC-
Confidence 776766555667788887788765544 6699999 666665555443 3567888888888665544333 44443
Q ss_pred eecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 434 ASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
. .......+... ...+.++.+.+++ .|..++.+|.|..++.
T Consensus 242 -~---~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 242 -P---DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp -T---TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred -C---CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 2 22222233221 2223345555555 5667788888988885
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=9.2e-09 Score=106.36 Aligned_cols=258 Identities=14% Similarity=0.130 Sum_probs=162.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccC--ccCEEEEEEee---CCCEEEEEe------CCCcEEEEeCCCCCcccee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH--SKKVTSVKFVT---EGDLFLTGS------ADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~---~~~~l~s~s------~dg~i~iwd~~~~~~~~~~ 267 (490)
+..|++++.|+.|+.+|..+|+.+..+... ......+..+| ++. +++++ .+|.|..||..++. .+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~---~~ 196 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGK---EA 196 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCC---EE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCc---EE
Confidence 567888889999999999999998776542 11111111111 444 44443 37899999998873 33
Q ss_pred eeecc-------------------------------cccceEEEEEecCCCEEEEEECCCe-------------------
Q 011256 268 HTLKD-------------------------------HTAEVQAVTVHATNKYFVTASLDNT------------------- 297 (490)
Q Consensus 268 ~~~~~-------------------------------h~~~v~~l~~~~~~~~l~s~~~dg~------------------- 297 (490)
..+.. +......+++.|++..++.+..++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 33221 0011125788898899999887764
Q ss_pred EEEEeCCCCeEEEEeecCCCCC----CCCCceEEEEcCCCc---EEEEEcCCCcEEEEECCCCceeeeecCCC-------
Q 011256 298 WCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV------- 363 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~------- 363 (490)
|..||..+|+.+..+....... ....+....+..+|. .++.++.+|.++++|..+|+.+.......
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccccc
Confidence 9999999999988776431111 112222233333565 78899999999999999998874332110
Q ss_pred ---------------------C-----------CeEEEEEcCCCCEEEEEeC----------------------------
Q 011256 364 ---------------------G-----------AVTAISFSENGYYLATAAH---------------------------- 383 (490)
Q Consensus 364 ---------------------~-----------~i~~l~~s~~~~~l~~~~~---------------------------- 383 (490)
. ....++|+|+..++++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0 0123688888777776532
Q ss_pred -----------------CC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEe
Q 011256 384 -----------------DG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCI 443 (490)
Q Consensus 384 -----------------d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~ 443 (490)
++ |..||+.+++....+... .+...-.+...+.++++++.| +++|+. .+.+.+
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~----~tG~~l 509 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAA----DTGEKL 509 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEE
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEEC----CCCccc
Confidence 25 899999999988777654 223333555678888999888 778876 444555
Q ss_pred eeecCCCCCcceEEEEEcCCCCeEE
Q 011256 444 KTFPDLSGTGKATCVKFGPDAKYIA 468 (490)
Q Consensus 444 ~~~~~~~~~~~v~~~~~s~~~~~l~ 468 (490)
..+.... .....-+.|..+|+..+
T Consensus 510 w~~~~~~-~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 510 WEQPAAS-GVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEECSS-CCCSCCEEEEETTEEEE
T ss_pred eeeeCCC-CcccCceEEEECCEEEE
Confidence 4444321 11123366677887433
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=8.2e-10 Score=104.45 Aligned_cols=245 Identities=11% Similarity=0.014 Sum_probs=157.9
Q ss_pred EEEecCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEeccC-------ccCEEEEEEeeCCCEEEEEeC--CCc
Q 011256 192 SLDIHYSKDVIATGG----------VDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTEGDLFLTGSA--DKT 252 (490)
Q Consensus 192 ~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~--dg~ 252 (490)
.+.++|+++.++++. .++.|.+||..+++.+.++..+ ......+.|+|||++++++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999888876 3688999999999999988643 123567899999999998875 356
Q ss_pred EEE--EeCCCCCccceeeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCCC-----CeEEEEeecCCCCCCCCCc
Q 011256 253 VRV--WQGSEDGNYDCKHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSS-----GICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 253 i~i--wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v 324 (490)
|.+ +|..+ +..+... +. +.+.|++ ..+++.+.||.+.+.|+.+ ++........ ......+.
T Consensus 149 v~V~~iD~~t------v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~-i~vg~~P~ 217 (368)
T 1mda_H 149 AGLSVPGASD------DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA-QNCSSQAA 217 (368)
T ss_dssp EEEEETTTEE------EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT-SCBCSCCE
T ss_pred EEEEEEchhh------ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee-eeCCCCcc
Confidence 888 88754 2222110 11 1233444 4556667889998899887 3322110000 00001222
Q ss_pred eEEEEcCCCcEEEEEcCCCcEEEEECCCCc--eeeeecCC----------CCCeEEEEEcCCCCEEEEEeC---------
Q 011256 325 TSAAFHPDGLILGTGTSEALVKIWDVKSQA--NVAKFDGH----------VGAVTAISFSENGYYLATAAH--------- 383 (490)
Q Consensus 325 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~----------~~~i~~l~~s~~~~~l~~~~~--------- 383 (490)
. .+++..++..+. +.|.+.|+..+. .+..+... ......+.|+|++..++++..
T Consensus 218 ---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~ 292 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAA 292 (368)
T ss_dssp ---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred ---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccccc
Confidence 3 555555555555 999999986542 23322110 112223789999988876532
Q ss_pred -CCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCE-EEEEe-cC--eEEEEEeecCCcceEeeeecCCCCCcceEEE
Q 011256 384 -DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSY-LAVAS-AD--IRVYQVASVKADWNCIKTFPDLSGTGKATCV 458 (490)
Q Consensus 384 -d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~-l~~~~-~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 458 (490)
+++.++|+.+.+.+..+... .....+.|+|+|+. +++.. .+ +.|+|. .+++.+..+... .....+
T Consensus 293 ~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~----~t~kvv~~I~vg---~~P~~i 362 (368)
T 1mda_H 293 AENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDA----ASDQDQSSVELD---KGPESL 362 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEES----SSCEEEEECCCC---SCCCEE
T ss_pred CCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEEC----CCCcEEEEEECC---CCCCEE
Confidence 24779999999998888764 36889999999985 44444 23 999998 677778777653 334556
Q ss_pred EEcC
Q 011256 459 KFGP 462 (490)
Q Consensus 459 ~~s~ 462 (490)
++.+
T Consensus 363 ~~~~ 366 (368)
T 1mda_H 363 SVQN 366 (368)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 5543
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.14 E-value=1.8e-08 Score=90.06 Aligned_cols=198 Identities=5% Similarity=-0.033 Sum_probs=136.5
Q ss_pred CeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCcEEEEeccCcc-CEEEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCcc
Q 011256 189 GIVSLDIHYSKDVIATGGV--DTNAVLFDRPSGQIVTTLSGHSK-KVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~ 264 (490)
....+.|++++.++++.+. ++.|.++|+.+++.+..+.-... ....+++ +++.|+ +...++.+.++|..+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~--- 96 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTL--- 96 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTT---
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCC---
Confidence 4578999998755555443 57999999999999988752221 2234444 354444 4456889999999875
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
+.+.++...... ...++++++.++++..++.|.++|..+.+.+..+........-..+..+.|. +|.+++....++.
T Consensus 97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 97 SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe
Confidence 555555422111 2335668887777777899999999999888877643110111235677887 7776666667889
Q ss_pred EEEEECCCCceeeeecCC-------------CCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCC
Q 011256 345 VKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKL 394 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~ 394 (490)
|.+.|..+++.+..+.-. ....+.|+|+|+++.|++++.. . |.+.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999988887531 1356899999998877776665 4 887777654
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.12 E-value=1.2e-07 Score=90.75 Aligned_cols=261 Identities=10% Similarity=0.045 Sum_probs=156.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV 277 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 277 (490)
++..+++++.++.|..+|..+|+.+..+............ .+..++.++.++.|..+|..++ +.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG---~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADG---AVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTC---CEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCC---cEEEEEeCCCCce
Confidence 4567888889999999999999988776544322222222 2457888889999999999876 3333333211110
Q ss_pred -----EEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCceEEEEcC--CCcEEEEEcCCCcEEEE
Q 011256 278 -----QAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAAFHP--DGLILGTGTSEALVKIW 348 (490)
Q Consensus 278 -----~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~g~~dg~i~iw 348 (490)
...... +..++.++.++.+..+|..+++.+.........+.. ..+..+...| .+..+++++.++.+..+
T Consensus 177 ~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 177 SLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp --CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 111222 457888888999999999999988776533111000 0000000111 24567777889999999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 349 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
|..+++.+..... .....+.. ++..+++++.++ |..+|..+++......... ...+..... .+..|++++.+
T Consensus 255 d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp ETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred ECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence 9999988766542 33445554 355666777775 9999999998776655221 112222223 25677777776
Q ss_pred --eEEEEEeecCCcceEeeeecCCCCCcceE-EEEEcCCCCeEEEEeCCCcEEEec
Q 011256 428 --IRVYQVASVKADWNCIKTFPDLSGTGKAT-CVKFGPDAKYIAVGSMDRNLRVFG 480 (490)
Q Consensus 428 --i~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~v~iw~ 480 (490)
+.+++.. +...+..+... ...+. .... .+..|+.++.+|.|+.|+
T Consensus 328 g~l~~~d~~----tG~~~~~~~~~--~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 328 GYLHWINVE----DGRFVAQQKVD--SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SEEEEEETT----TCCEEEEEECC--TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CeEEEEECC----CCcEEEEEecC--CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 5555542 23333333221 11111 1222 245788889999999886
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=1.4e-06 Score=92.00 Aligned_cols=286 Identities=9% Similarity=0.030 Sum_probs=180.7
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc-------CccCEEEEEEeeCCCEEEEEeCCCcEEEEeCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG-------HSKKVTSVKFVTEGDLFLTGSADKTVRVWQGS 259 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~ 259 (490)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |-.|+.++-|..|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35799999988887655 4444 588999877655433211 235699999988887 5567777778889865
Q ss_pred CCCccceeeeec----ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCC---CCCCCCceEEEEcCC
Q 011256 260 EDGNYDCKHTLK----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGT---DGRPEGYTSAAFHPD 332 (490)
Q Consensus 260 ~~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~ 332 (490)
... +....... -....|.++...++|. |..|+.++-|..||..++........... .-....|.++...++
T Consensus 339 ~~~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNR-FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGS-SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred ccc-ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 421 11111100 1235699998887776 45577777899999887765433211100 012356889999888
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeeec----CCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeec----CC
Q 011256 333 GLILGTGTSEALVKIWDVKSQANVAKFD----GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES----SD 404 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~----~~ 404 (490)
|.+|.+|+.++-|.+||..+++...-.. .....|.++...++|.+.+... +||.+||..+.+....... ..
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc
Confidence 8866777777779999988775433221 1345799999988887665554 7799999877544322111 11
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeee--ecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 405 SETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKT--FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
....|.++..+++|.+.+.....+..|+.... .. .... .........|.++...++|.+.++. .. .|..|+..
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~--~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~ 570 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGEEGLSVFKQEGL--DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEK 570 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEESSCEEEEEEETT--EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETT
T ss_pred CCceEEEEEECCCCCEEEEeCCceEEEeCCCC--eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCC
Confidence 13568999999999887766644777776321 11 1110 0000124578999999998865544 34 57777764
Q ss_pred C
Q 011256 483 G 483 (490)
Q Consensus 483 ~ 483 (490)
.
T Consensus 571 ~ 571 (795)
T 4a2l_A 571 D 571 (795)
T ss_dssp T
T ss_pred C
Confidence 4
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.08 E-value=1e-07 Score=85.16 Aligned_cols=200 Identities=13% Similarity=0.141 Sum_probs=135.1
Q ss_pred cEEEEeccCcc--CEEEEEEeeCCCEEEEEeC--CCcEEEEeCCCCCccceeeeecc-cccceEEEEEecCCCEEEE-EE
Q 011256 220 QIVTTLSGHSK--KVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNYDCKHTLKD-HTAEVQAVTVHATNKYFVT-AS 293 (490)
Q Consensus 220 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s-~~ 293 (490)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.++ +.+..+.- .......+++. ++.++. .-
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG---KVENIHKMDDSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE--TTEEEEEET
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC---CEEEEEecCCCcceEEEEEe--CCEEEEEEe
Confidence 4455554 443 3678999998755555443 579999999987 44444331 11223355555 445544 44
Q ss_pred CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC-----CCeEE
Q 011256 294 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTA 368 (490)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~ 368 (490)
.++.+.++|..+.+.+..+... . + .+ ..+++||..++++..++.|.++|..+.+.+..+.-.. ..++.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~-~--~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-M-K--DG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-S-S--SC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-C-C--Ce---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 6789999999999999888632 0 1 11 3355677777777778999999999988887775321 24678
Q ss_pred EEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC-----------CCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 369 ISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 369 l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
+.|. +|..++....++ |.+.|..+++.+..+.... .....+.++|+|+++.+++++.. -++|.+
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 8888 675544444445 9999999999888887531 12356899999999988888776 455544
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.08 E-value=6.4e-08 Score=85.39 Aligned_cols=199 Identities=11% Similarity=0.109 Sum_probs=136.3
Q ss_pred cEEEEeccCccC--EEEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEE-EC
Q 011256 220 QIVTTLSGHSKK--VTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SL 294 (490)
Q Consensus 220 ~~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~ 294 (490)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.++ +.+..+... .......+.+.++.+... -.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg---kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG---KTLQQIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC---CEEEEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCC---cEEEEEecC-CccceeEEEEeCCEEEEEEee
Confidence 3455664 4433 4788888 677777777766 8999999987 444444322 233332223345555554 45
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC-----CCeEEE
Q 011256 295 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAI 369 (490)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l 369 (490)
++.+.+||..+.+.+.++.... ....+.+|+..|+.+..++.|.++|..+.+.+..+.-.. ..++.+
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSS--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred CCEEEEEECccCcEEEEEECCC--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 8899999999999999887531 112333567777776667889999999998887765321 345667
Q ss_pred EEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC----------CCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 370 SFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 370 ~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
.|. +|+..+....+. |.+.|..+++.+..+.... .....+.|+|+|+++.|++.+.. -++|.+
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 876 676555554455 9999999999888777631 12356899999999999999987 677766
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=9.3e-09 Score=101.26 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=146.3
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCcEEEEecc-CccCEEEEEE-e-eCCCEEEEEe------------------CCCcEE
Q 011256 197 YSKDVIATGGV-DTNAVLFDRPSGQIVTTLSG-HSKKVTSVKF-V-TEGDLFLTGS------------------ADKTVR 254 (490)
Q Consensus 197 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~l~s~s------------------~dg~i~ 254 (490)
+||+++++... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 47887776654 56799999999998774432 2245788888 5 8999988885 245788
Q ss_pred EEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCC--------------------------------------
Q 011256 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-------------------------------------- 296 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-------------------------------------- 296 (490)
+.|..+. +....+.--. ....++++|+|+++++.+.+.
T Consensus 179 vID~~t~---~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKW---EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTT---EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCC---eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9998875 4555444212 346678899999998888653
Q ss_pred eEEEEeCCC--CeE-EEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEEECCCCc------------eeeeec
Q 011256 297 TWCFYDLSS--GIC-LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------NVAKFD 360 (490)
Q Consensus 297 ~i~iwd~~~--~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~------------~~~~~~ 360 (490)
.|.+.|..+ +.. +..+... ....++.++|||+++++++ .+..|.++|+.+.+ .+..+.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIA------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEE------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred cEEEEeCcccCCceeEEEEecC------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 366677766 433 3333322 3457899999998777655 57899999998653 233333
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC----------CcceeeeecCCCC---CCeeEEEEcCCCCEEEEEec
Q 011256 361 GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK----------LKNFRSFESSDSE---TPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 361 ~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~----------~~~~~~~~~~~~~---~~i~~i~~s~~~~~l~~~~~ 426 (490)
-......++|+++|...++..-++ |.+||+.+ ...+..+..+... .....+.++|||++|+++..
T Consensus 329 -vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp -CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred -CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 234578999999994334444556 99999977 4445555553110 00122345799999999865
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=6.1e-07 Score=81.30 Aligned_cols=248 Identities=8% Similarity=-0.025 Sum_probs=144.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCcE-----EEEeccCccCEEEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCccceeeeeccc
Q 011256 200 DVIATGGVDTNAVLFDRPSGQI-----VTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNYDCKHTLKDH 273 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~h 273 (490)
.+|+.+.. +.|+.+++..... ...+......+..++|++++..|+ +-..++.|.+++..... ....+...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~~ 77 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQD 77 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECTT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEECC
Confidence 34444443 4688888765432 111222234578999998665444 44567899999987642 22222222
Q ss_pred ccceEEEEEecCCCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC---CCcEEEEE
Q 011256 274 TAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWD 349 (490)
Q Consensus 274 ~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd 349 (490)
......+++++++..++.+ ...+.|.++++.......... .. ......++++|++..|+.+.. .+.|..++
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TG----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SS----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CC----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 2467899999976655555 456789999987543222221 11 145689999996555544443 46888888
Q ss_pred CCCCceeeee-cCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEec
Q 011256 350 VKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 350 ~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
+.... ...+ .........+++++++..|+.+... + |.++|+........+.. ......++++ +..|+++..
T Consensus 153 ~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 153 MDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp TTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEET
T ss_pred cCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEEC
Confidence 75432 2222 2233467899999987777766655 4 99999875443333322 2334567664 556666654
Q ss_pred C-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCC
Q 011256 427 D-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAK 465 (490)
Q Consensus 427 d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 465 (490)
. -+|+.++. .....+..+.... ......+++.|++.
T Consensus 227 ~~~~v~~~d~--~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDL--AISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEET--TTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CCCeEEEEeC--CCCCceEEEcccc-ccccceeeecCccC
Confidence 4 34443322 3345555554321 12356778877754
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.05 E-value=1.9e-06 Score=91.03 Aligned_cols=282 Identities=8% Similarity=0.017 Sum_probs=177.9
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec------cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
...|.++...++|.+. .|+.++-|..|+..++....... .....|.++...++|. |..|+.++-|..|+..+
T Consensus 309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 3579999999887754 46666778899876554322211 1245699998887777 55577777799998776
Q ss_pred CCccceeeee------cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc
Q 011256 261 DGNYDCKHTL------KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL 334 (490)
Q Consensus 261 ~~~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 334 (490)
+. +.....- ......|.++...+++..|..|+.++-|.+||..++......... .......|.++...++|.
T Consensus 387 ~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~-~~l~~~~v~~i~~d~~g~ 464 (795)
T 4a2l_A 387 QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN-SQLVNENVYAILPDGEGN 464 (795)
T ss_dssp CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT-SCCSCSCEEEEEECSSSC
T ss_pred Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC-CCcCCCeeEEEEECCCCC
Confidence 41 1111100 012357999998888886777888788999999887654332111 112235789999988887
Q ss_pred EEEEEcCCCcEEEEECCCCceeeeecC------CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeec---C--
Q 011256 335 ILGTGTSEALVKIWDVKSQANVAKFDG------HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFES---S-- 403 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~---~-- 403 (490)
+.+.. .+ -|.+||..+++....... ....|.++...++|.+.+... +||..||..+... .+.. .
T Consensus 465 lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~ 539 (795)
T 4a2l_A 465 LWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSN 539 (795)
T ss_dssp EEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCG
T ss_pred EEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCC
Confidence 65554 44 488999887654322211 235789999998887666554 7799999876554 2221 0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 404 DSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.....|.++..+++|.+.+.....+..|+.. ...........+. ....|.++...++|.+.+++ . +.|..|+..
T Consensus 540 l~~~~i~~i~~d~~g~lWigT~~Gl~~~d~~--~~~~~~~~~~~gl-~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~ 613 (795)
T 4a2l_A 540 VTKLFTNCIYEASNGIIWVGTREGFYCFNEK--DKQIKRYNTTNGL-PNNVVYGILEDSFGRLWLST-N-RGISCFNPE 613 (795)
T ss_dssp GGGSCEEEEEECTTSCEEEEESSCEEEEETT--TTEEEEECGGGTC-SCSCEEEEEECTTSCEEEEE-T-TEEEEEETT
T ss_pred CCCCeeEEEEECCCCCEEEEeCCCceeECCC--CCcEEEeCCCCCC-chhheEEEEECCCCCEEEEc-C-CceEEEcCC
Confidence 1134688999999998766555456666641 1222222221222 24468899999888766554 3 445666654
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.04 E-value=5.6e-08 Score=85.81 Aligned_cols=190 Identities=10% Similarity=0.052 Sum_probs=131.7
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEE-eCCCcEEEEeCCCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDG 262 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~ 262 (490)
...-...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.... ........++++.|... ..++.+.+||..+.
T Consensus 41 ~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~- 117 (262)
T 3nol_A 41 TKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL- 117 (262)
T ss_dssp TTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTC-
T ss_pred CCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccC-
Confidence 33455788888 666777777766 89999999999998876433 33333333345555544 45889999999886
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
+.+.++.... ....+.+++..|+.+..++.|.++|..+.+.+..+........-..++.+.|. +|.+++..-.+
T Consensus 118 --~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 118 --RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp --CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred --cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 5555555322 22333457777777777889999999999888877643110111334557776 77777666678
Q ss_pred CcEEEEECCCCceeeeecCC------------CCCeEEEEEcCCCCEEEEEeCC
Q 011256 343 ALVKIWDVKSQANVAKFDGH------------VGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~------------~~~i~~l~~s~~~~~l~~~~~d 384 (490)
..|.+.|..+++.+..+... ....+.|+|+|++..|++.+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 89999999999988877531 1356899999998888887766
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.02 E-value=1.5e-07 Score=87.95 Aligned_cols=247 Identities=10% Similarity=0.073 Sum_probs=146.2
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeec-----------------ccccceEEEEEecCCCEEEEEE
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-----------------DHTAEVQAVTVHATNKYFVTAS 293 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~l~~~~~~~~l~s~~ 293 (490)
...+++|.+++++++++..++.|..|+..+.. ........ .....+.++++.+++..|+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 35678889999878888889999999876531 11111000 1123578999998444566665
Q ss_pred CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcC-----------------CCcEEEEECCCCce
Q 011256 294 LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS-----------------EALVKIWDVKSQAN 355 (490)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~-----------------dg~i~iwd~~~~~~ 355 (490)
..+.|..+|..++... .+..............+++.+ +|.+.++-.. +|.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5566888987765422 221110001113467899999 9987776432 36789999877654
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCc--ceeeeecCCCCCCeeEEEEcCCCCEEEEEec-----
Q 011256 356 VAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLK--NFRSFESSDSETPTNSVDFDHSGSYLAVASA----- 426 (490)
Q Consensus 356 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~--~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~----- 426 (490)
..... .......++|+++|++|+++... + |.+|++.... ....+... .. ...++++++|.+.++...
T Consensus 178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecCccccc
Confidence 32222 12345679999999877766543 4 9999987532 11222211 23 788999999987776654
Q ss_pred -----CeEEEEEeecCCcceEeeeecCCCC--CcceEEEEEcCCCCeEEEEeCCCcEEEecCCCCCCC
Q 011256 427 -----DIRVYQVASVKADWNCIKTFPDLSG--TGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAP 487 (490)
Q Consensus 427 -----di~v~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 487 (490)
...|+.++.. ...+..+..... ...++++++ .++.+.++....+.|.++++.....+
T Consensus 254 ~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~~ 317 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKGNS 317 (322)
T ss_dssp TTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC------
T ss_pred ccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccccCc
Confidence 3556666432 333333332211 234666666 36665555557788999998765443
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.00 E-value=8.8e-07 Score=80.26 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=139.4
Q ss_pred CeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCE-EEEEeCCCcEEEEeCCCCCccce
Q 011256 189 GIVSLDIHYSKDVI-ATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDL-FLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 189 ~I~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
.+..++|++++..| ++-..++.|..++...+.....+.........+++.+++.. +++-...+.|.+++.+... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---R 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---E
Confidence 46789999976555 45455789999998765544444333356789999987554 4454567889999986532 1
Q ss_pred eeeecccccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE-EEEcCC
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSE 342 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~d 342 (490)
.............++++|++..|+.+.. .+.|..+++..... ..+... .......+++++++..| ++-...
T Consensus 114 ~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~----~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD----NLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT----TCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEEC----CCCCCcEEEEcCCCCEEEEEECCC
Confidence 1112212245789999997776666554 36888888764332 222211 11456889999976555 555566
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
+.|.++|+........+.. ......+++. +..|+.+..+ + |.++|..+++....+.... ......+++.|++.
T Consensus 189 ~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred CEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence 8999999875543333332 2334667764 4455555544 4 9999999888887776532 12367788888764
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.98 E-value=1.9e-07 Score=82.42 Aligned_cols=197 Identities=12% Similarity=0.099 Sum_probs=134.9
Q ss_pred cEEEEeccCcc--CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccce--EEEEEecCCCEEEEEECC
Q 011256 220 QIVTTLSGHSK--KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEV--QAVTVHATNKYFVTASLD 295 (490)
Q Consensus 220 ~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~d 295 (490)
+.+.++. |.. -...+.|+ ++.++++.+.+|.|+++|+.++. .+..+ -.... ..+++. .+..++..-.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk---v~~~~--l~~~~FgeGit~~-g~~Ly~ltw~~ 115 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ---PVWME--RLGNIFAEGLASD-GERLYQLTWTE 115 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS---CSEEE--ECTTCCEEEEEEC-SSCEEEEESSS
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCc---EEeEE--CCCCcceeEEEEe-CCEEEEEEccC
Confidence 4455553 433 34678886 46677788888999999999874 33333 11222 334443 23444455568
Q ss_pred CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC-----CCeEEEE
Q 011256 296 NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAIS 370 (490)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~ 370 (490)
+.+.+||..+.+.+.++.... . -..++ +|+..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~-----e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSG-----E-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSS-----C-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred CEEEEEECCcCcEEEEEeCCC-----c-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 999999999999999987431 1 12333 567777777778999999999998888775321 2456778
Q ss_pred EcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC-----------CCCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 371 FSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS-----------DSETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 371 ~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-----------~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
|. +|+..+....+. |.+.|..+++.+..+... ......+.|+++|+++.|++.+.. -++|.+
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev 262 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEV 262 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEE
Confidence 77 776555444445 999999999988777653 113457899999998888888876 666665
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.98 E-value=1.5e-06 Score=80.39 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=140.0
Q ss_pred CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC--C
Q 011256 219 GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD--N 296 (490)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--g 296 (490)
.+.+..+... .....++|+++++++++-..++.|..||.... ....+. ....+.++++.++++++++.... .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcc
Confidence 3444455432 45678999999987777667899999987652 222222 23468899999999966655433 2
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce-eeee---------cCCCCCe
Q 011256 297 TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN-VAKF---------DGHVGAV 366 (490)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~---------~~~~~~i 366 (490)
.|..+|..+++......... ......++..+++..+++-..++.|+++|...++. +... ...-...
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~----~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPD----AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT----CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred eEEEEcCCCCeEEEEEeCCC----ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 47778877777543332211 12234555566666666655688999999876421 2100 1111234
Q ss_pred EEEEEcCCCCEEEEEeCC-C-EEEEECCC-Ccc--eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCc
Q 011256 367 TAISFSENGYYLATAAHD-G-VKLWDLRK-LKN--FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKAD 439 (490)
Q Consensus 367 ~~l~~s~~~~~l~~~~~d-~-i~iwd~~~-~~~--~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~ 439 (490)
+.+ ++++.+|+++... + |..||+.. +.. ...+.. ......++++++|+++++.... |.+++. . ..
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~--~-G~ 243 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP--D-RS 243 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECT--T-CC
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECC--C-CC
Confidence 556 7788777776655 4 99999874 221 122211 1345779999999876555444 555542 1 11
Q ss_pred ceEeeeecCCCCCcceEEEEEc---CCCCeEEEEeCC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFG---PDAKYIAVGSMD 473 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~d 473 (490)
...+..+.. ....+++++|. |+++.|+.++..
T Consensus 244 ~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 244 TTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEEeeccc--ccCCceEEEEecccCCCCEEEEECCC
Confidence 111222222 13568999998 898887776654
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=1.6e-07 Score=96.69 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=126.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccC----------E-EEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKK----------V-TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
+..+++++.++.|+.+|..+|+.+-++...... + ..+.+ .+..+++++.|+.|..+|..++ +.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG---~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTG---KAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTC---CEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCC---CEe
Confidence 567777888899999999999998887643211 0 11222 3557888899999999999887 333
Q ss_pred eeecccc----cceEE-EEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCCC-----------------
Q 011256 268 HTLKDHT----AEVQA-VTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTDG----------------- 319 (490)
Q Consensus 268 ~~~~~h~----~~v~~-l~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~----------------- 319 (490)
..+.... ..+.+ ..+ .+..+++++. +|.|..+|..+|+.+..+.......
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 3332210 11111 011 1345555543 5899999999999988775321100
Q ss_pred ---------CCCCceEEEEcCCCcEEEEEcCCC-------------------cEEEEECCCCceeeeecC--CC------
Q 011256 320 ---------RPEGYTSAAFHPDGLILGTGTSEA-------------------LVKIWDVKSQANVAKFDG--HV------ 363 (490)
Q Consensus 320 ---------~~~~v~~~~~~~~~~~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~--~~------ 363 (490)
.......+++.|+..++++++.++ .|..+|..+|+.+-.+.. |.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 001123478888888888888776 399999999998877753 22
Q ss_pred -CCeEEEEEcCCCC---EEEEEeCCC-EEEEECCCCcceeee
Q 011256 364 -GAVTAISFSENGY---YLATAAHDG-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 364 -~~i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~ 400 (490)
.+.....+..+|+ .++.++.++ ++++|..+++.+..+
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 2233233333665 678888888 999999999877433
No 250
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.96 E-value=4.9e-06 Score=77.74 Aligned_cols=277 Identities=9% Similarity=0.057 Sum_probs=154.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec----cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCC
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS----GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDG 262 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 262 (490)
...+.+|.|.+.+..+++ +..|.|. .....++.-.... .....+.++.|.+ +..++ ++.+|.|.. ..+.+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 347999999877777775 4566553 3333343222221 1244688999975 44444 455665443 333344
Q ss_pred ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
.+..+.....+...+..+.+.+++..++++ .+|.|.. ....+..-..... .....+..+.+.+++.+++++...
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~G 183 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSRG 183 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETTS
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECCC
Confidence 444433222234557788887766655554 4565432 2223433333322 122568899999999888877654
Q ss_pred CcEEEEEC--CCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecC--CCCCCeeEEEEcCC
Q 011256 343 ALVKIWDV--KSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESS--DSETPTNSVDFDHS 417 (490)
Q Consensus 343 g~i~iwd~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~--~~~~~i~~i~~s~~ 417 (490)
+..+-.|- .+-+.+. ......+..+.+.+++.+++++ .++ +++.+...++....+... .....+..+.+.++
T Consensus 184 ~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 184 SFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp SEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred cEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 44444442 2222321 2345678899999998776555 455 666542223322222211 11235788999988
Q ss_pred CCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 418 GSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 418 ~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
+.+++++... .+|.-......|..+...... ...+.++.|.+++. +++++.+|.|.-++-
T Consensus 261 ~~~~~~g~~g-~i~~S~DgG~tW~~~~~~~~~--~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 261 NEVWLAGGAG-ALLCSQDGGQTWQQDVDVKKV--PSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCEEEEESTT-CEEEESSTTSSCEECGGGTTS--SSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CEEEEEeCCC-eEEEeCCCCcccEEcCccCCC--CCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 8887776654 334333444567655432211 34567888875554 666678998776654
No 251
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=6.5e-07 Score=78.34 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=134.3
Q ss_pred cEEEEeccCc--cCEEEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCccceeeeeccccc-ceEEEEEecCCCEEEEEEC
Q 011256 220 QIVTTLSGHS--KKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDCKHTLKDHTA-EVQAVTVHATNKYFVTASL 294 (490)
Q Consensus 220 ~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~ 294 (490)
+.+.++. |. .-...+.|++ +.++.+.+.+| .|+++|+.++ +.+..+..... .-..+++. .+..+...-.
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg---kv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~ 83 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG---RILQRAEVPPPYFGAGIVAW-RDRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC---CEEEEEECCTTCCEEEEEEE-TTEEEEEESS
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC---CEEEEEeCCCCcceeEEEEe-CCEEEEEEee
Confidence 3455553 44 3466888875 56666666654 8999999987 44444432211 11234443 2334444456
Q ss_pred CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCC-----CCeEEE
Q 011256 295 DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHV-----GAVTAI 369 (490)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l 369 (490)
++.+.+||..+.+.+.++.... .+ ..++ +++..|+++..++.|.++|..+.+.+.++.-.. ..++.+
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~-----~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPG-----EG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSS-----CC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CCEEEEEECCcCcEEEEEeCCC-----Cc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 8999999999999999987531 11 3343 567667777778899999999998887775321 355677
Q ss_pred EEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCC-----------CCCCeeEEEEcCCCCEEEEEecC-eEEEEE
Q 011256 370 SFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSD-----------SETPTNSVDFDHSGSYLAVASAD-IRVYQV 433 (490)
Q Consensus 370 ~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~-----------~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~ 433 (490)
.+. +|+.++...... |.+.|.++++.+..+.... .....+.|+++|+++.|++.+.. -++|.+
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 776 666555554444 9999999999887776431 12356899999999999988877 667766
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.94 E-value=1.3e-06 Score=81.50 Aligned_cols=232 Identities=10% Similarity=0.040 Sum_probs=142.3
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec-c------------------CccCEEEEEEee-CCCEEEEEeC
Q 011256 190 IVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS-G------------------HSKKVTSVKFVT-EGDLFLTGSA 249 (490)
Q Consensus 190 I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~------------------h~~~v~~l~~~~-~~~~l~s~s~ 249 (490)
..+++|++++++++++..++.|..|+..++....... . ....+..+++.+ +++ |+.+..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 3578899999878888889999999987655432110 0 113578899997 565 555544
Q ss_pred CCcEEEEeCCCCCccceeee-ecc-cccceEEEEEec-CCCEEEEEEC-----------------CCeEEEEeCCCCeEE
Q 011256 250 DKTVRVWQGSEDGNYDCKHT-LKD-HTAEVQAVTVHA-TNKYFVTASL-----------------DNTWCFYDLSSGICL 309 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~-~~~-h~~~v~~l~~~~-~~~~l~s~~~-----------------dg~i~iwd~~~~~~~ 309 (490)
.+.|..+|..++. ...+.. ..+ .......+++.+ +|+++++-.. ++.|..||..++...
T Consensus 100 ~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 4558888866421 111111 111 123478899999 8887666432 367899998777643
Q ss_pred EEeecCCCCCCCCCceEEEEcCCCcEEEEE-cCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcCCCCEEEEEeC---
Q 011256 310 TQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAH--- 383 (490)
Q Consensus 310 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--- 383 (490)
...... .....++++++++.|+++ +..+.|.+|++.... ....+....+ ...+++.++|++.++...
T Consensus 179 ~~~~~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 179 LLLKEL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp EEEEEE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred EeccCC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 332211 335679999999866555 566889999987421 1112211223 788999999987777654
Q ss_pred -------CC-EEEEECCCCcceeeeecCCC--CCCeeEEEEcCCCCEEEEEe-cC--eEEEEE
Q 011256 384 -------DG-VKLWDLRKLKNFRSFESSDS--ETPTNSVDFDHSGSYLAVAS-AD--IRVYQV 433 (490)
Q Consensus 384 -------d~-i~iwd~~~~~~~~~~~~~~~--~~~i~~i~~s~~~~~l~~~~-~d--i~v~~~ 433 (490)
.+ |..+|.. ++.+..+..... ...+..+++. ++ .|++++ .+ |.++++
T Consensus 252 ~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC
T ss_pred ccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEec
Confidence 23 8888864 666666654321 2346666663 44 444443 33 666654
No 253
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=3.2e-10 Score=108.35 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=93.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCC
Q 011256 240 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDG 319 (490)
Q Consensus 240 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 319 (490)
++..+++++.||.|..||..++ +.+..+.. +.+.+..+..++..+++++.||.|+.||..+++.+........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~-- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP-- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC---CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCC---CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--
Confidence 6778999999999999999887 45555544 4555555566777888888999999999998877655432100
Q ss_pred CCCCce-EEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcce
Q 011256 320 RPEGYT-SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNF 397 (490)
Q Consensus 320 ~~~~v~-~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~ 397 (490)
..+. +..+. ++..+++|+.++.|+.||..+|+.+..+..+. ...++|++..+++++.++ |+.||.++++..
T Consensus 81 --~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 81 --ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp --HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred --cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 0010 00111 34567788889999999999999887776543 234567888888888877 999999999877
Q ss_pred eeeecCCCCCCeeEEEEcCCC---CEEEEEecC--eEEEEE
Q 011256 398 RSFESSDSETPTNSVDFDHSG---SYLAVASAD--IRVYQV 433 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~---~~l~~~~~d--i~v~~~ 433 (490)
..+.... .....++.+. ..+++++.+ +..|+.
T Consensus 154 W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 154 WNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp CEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred EeEeccc----ccCccccCCccccceEEEECCCCEEEEEEC
Confidence 6654321 1222333322 445666666 555655
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.90 E-value=1.3e-06 Score=76.33 Aligned_cols=189 Identities=12% Similarity=0.009 Sum_probs=128.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDT--NAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN 263 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~ 263 (490)
..-...+.|+. +.++.+.+.+| .|+.+|+.+++.+..+..... .........++ +......++.+.+||..+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl-- 95 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATL-- 95 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTT--
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcC--
Confidence 34566888986 55666666654 899999999999988764332 22222233344 4444556899999999886
Q ss_pred cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 264 YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 264 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
+.+.++.... .=..+ .+++..|+.+..++.|.++|..+.+.+..+........-..++.+.+. +|.+++..-.+.
T Consensus 96 -~~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 -TPRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp -EEEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred -cEEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence 5666665322 22344 456777777777899999999999888877643111111234566665 677776666778
Q ss_pred cEEEEECCCCceeeeecCC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 011256 344 LVKIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~d 384 (490)
.|.+.|..+++.+..+.-. ..-.+.|+++|++..|++.+..
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999999999988877421 1356899999988777777765
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.89 E-value=4.3e-07 Score=80.14 Aligned_cols=188 Identities=13% Similarity=0.053 Sum_probs=129.3
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
..-...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ -. .........++++ +.+....++.+.+||..+. +
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl---~ 127 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP---Q 127 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTT---E
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcC---c
Confidence 4455678887 4667777788899999999999988776 22 2333322233444 4444556889999999886 5
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcE
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALV 345 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 345 (490)
.+.++... ..-..++ ++++.|+.+..++.|.++|..+.+.+..+........-..++.+.|. +|.+++....+..|
T Consensus 128 ~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 128 RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence 66665532 2223443 56888888878999999999999988877643211111244667776 77777666678899
Q ss_pred EEEECCCCceeeeecCC-------------CCCeEEEEEcCCCCEEEEEeCC
Q 011256 346 KIWDVKSQANVAKFDGH-------------VGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 346 ~iwd~~~~~~~~~~~~~-------------~~~i~~l~~s~~~~~l~~~~~d 384 (490)
.+.|..+++.+..+.-. ..-.+.|+|+|++..|++.+..
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 99999999988877421 1356899999987666666554
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=9.3e-06 Score=85.60 Aligned_cols=278 Identities=11% Similarity=0.051 Sum_probs=171.0
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec---------cCccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---------GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
...|.++...++|.+ ..|+.++-|..|+...+....... .....|.++...++|. |..|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 457999999888764 446666778889877654332211 1235689998877776 55567666688898
Q ss_pred CCCCCccceeeee----cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 258 GSEDGNYDCKHTL----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 258 ~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
..+. ....+ ......|.++...+++.+ ..|+.++-+..+|..++....... . ......|.++...++|
T Consensus 390 ~~~~----~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~-~--~~~~~~v~~i~~d~~g 461 (781)
T 3v9f_A 390 NGKR----VAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIEL-E--KNELLDVRVFYEDKNK 461 (781)
T ss_dssp TTEE----EEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCS-T--TTCCCCEEEEEECTTS
T ss_pred CCCC----eEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEecc-C--CCCCCeEEEEEECCCC
Confidence 7542 11111 123457889988777764 446777779999988776433221 1 1123578899888888
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeeecCC-----CCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCC--CC
Q 011256 334 LILGTGTSEALVKIWDVKSQANVAKFDGH-----VGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD--SE 406 (490)
Q Consensus 334 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~--~~ 406 (490)
.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+....+||..||..+.+.. .+.... ..
T Consensus 462 ~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~ 538 (781)
T 3v9f_A 462 KIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCS 538 (781)
T ss_dssp EEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-EECTTTTCSC
T ss_pred CEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-EccCCCCCCC
Confidence 7554 444 45889998876543322211 35799999998888666554467999998765432 232111 14
Q ss_pred CCeeEEEEcCCCCEEEEEecCe-EEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 407 TPTNSVDFDHSGSYLAVASADI-RVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~di-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
..|.++..+++|.+.+.....+ ..|+. ............+. ....|.++...++|.+.+ ++.+| |..|+..
T Consensus 539 ~~i~~i~~d~~g~lWi~T~~Glv~~~d~--~~~~~~~~~~~~gl-~~~~i~~i~~d~~g~lW~-~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLATGEGLVCFPSA--RNFDYQVFQRKEGL-PNTHIRAISEDKNGNIWA-STNTG-ISCYITS 610 (781)
T ss_dssp SCEEEEEECTTSCEEEEETTEEEEESCT--TTCCCEEECGGGTC-SCCCCCEEEECSSSCEEE-ECSSC-EEEEETT
T ss_pred CeeEEEEECCCCCEEEEECCCceEEECC--CCCcEEEccccCCC-CCceEEEEEECCCCCEEE-EcCCc-eEEEECC
Confidence 5688999999998766655334 55443 22222222222222 234678888888887555 44555 5555544
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=9.2e-06 Score=85.63 Aligned_cols=286 Identities=9% Similarity=0.028 Sum_probs=171.8
Q ss_pred CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec--------------cCccCEEEEEEeeCCCEEEEEeCCCc
Q 011256 187 KPGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS--------------GHSKKVTSVKFVTEGDLFLTGSADKT 252 (490)
Q Consensus 187 ~~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~l~s~s~dg~ 252 (490)
...|.++...++|.+. .|+..+-|.++|..++....... .....|.++...++|. |-.|+.++-
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 3569999888777644 45554568889987655432111 1345699998888776 556776777
Q ss_pred EEEEeCCCCCccceeee-------ecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCce
Q 011256 253 VRVWQGSEDGNYDCKHT-------LKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT 325 (490)
Q Consensus 253 i~iwd~~~~~~~~~~~~-------~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 325 (490)
|..|+..... +..... .......|.++...+++. |..|+.++-|..||..++.... +... .......|.
T Consensus 335 l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~ 410 (781)
T 3v9f_A 335 INFISNAPPT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVL 410 (781)
T ss_dssp EEEECSSCCS-CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEEC-C------CCCSBEE
T ss_pred EEEeCCCCCc-ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceE
Confidence 8889876532 111110 011235689998887766 4556666678889987554322 1110 112235688
Q ss_pred EEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecC
Q 011256 326 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD--GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~ 403 (490)
++...++|.+.+ |+.++-|..+|..+++...... .....|.++...++|.+.+ |+.+||.+||..+.+........
T Consensus 411 ~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 411 CSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp EEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTT
T ss_pred EEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCc
Confidence 898888877554 6666679999987765432221 1345799999888876554 45577999998876543322111
Q ss_pred ---CCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 404 ---DSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 404 ---~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
.....|.++..+++|.+.+....+ +..|+.. ............. ....|.++...++|.+.++ +.+|.|..|
T Consensus 489 ~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~--~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWi~-T~~Glv~~~ 564 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD--MQLVRKFNQYEGF-CSNTINQIYRSSKGQMWLA-TGEGLVCFP 564 (781)
T ss_dssp TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT--CCEEEEECTTTTC-SCSCEEEEEECTTSCEEEE-ETTEEEEES
T ss_pred ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC--CCeEEEccCCCCC-CCCeeEEEEECCCCCEEEE-ECCCceEEE
Confidence 013568899999999877665433 6665531 1112111111111 2457899999988886554 446655888
Q ss_pred cCCCC
Q 011256 480 GLPGN 484 (490)
Q Consensus 480 ~~~~~ 484 (490)
+...+
T Consensus 565 d~~~~ 569 (781)
T 3v9f_A 565 SARNF 569 (781)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 76544
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=1.1e-06 Score=90.65 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=148.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCc----cCEEEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCccceee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS----KKVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 268 (490)
+..+++++.|+.|+.+|..+|+.+..+.... ..+.+--...++ .+++++. +|.|..+|..++. .+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~W 192 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGK---LAW 192 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCC---EEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCc---EEE
Confidence 5678888899999999999999987765421 111110001144 4555443 5889999998863 333
Q ss_pred eecc-------------------------------cccceEEEEEecCCCEEEEEECCC-------------------eE
Q 011256 269 TLKD-------------------------------HTAEVQAVTVHATNKYFVTASLDN-------------------TW 298 (490)
Q Consensus 269 ~~~~-------------------------------h~~~v~~l~~~~~~~~l~s~~~dg-------------------~i 298 (490)
.+.. +......+++.|....++.++.++ .|
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 3221 001112467888888888887766 39
Q ss_pred EEEeCCCCeEEEEeecCCCCC----CCCCceEEEEcCCCc---EEEEEcCCCcEEEEECCCCceeeeecCCC--------
Q 011256 299 CFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV-------- 363 (490)
Q Consensus 299 ~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------- 363 (490)
..+|..+|+.+..+....... ...+.....+..+|. .++.++.+|.++++|..+|+.+.......
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 999999999988876431111 012233333334665 78899999999999999998874332111
Q ss_pred ----CC------------------------eEEEEEcCCCCEEEEEe---------------------------------
Q 011256 364 ----GA------------------------VTAISFSENGYYLATAA--------------------------------- 382 (490)
Q Consensus 364 ----~~------------------------i~~l~~s~~~~~l~~~~--------------------------------- 382 (490)
.+ -..++++|+..++++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00 01267777766655421
Q ss_pred ---CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeec
Q 011256 383 ---HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 383 ---~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~ 447 (490)
.++ |..||+.+++....+... .+.....+...+.++++++.+ +++|+. .+.+.+..+.
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~----~tG~~l~~~~ 496 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSA----DKGEALWQFE 496 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEET----TTCCEEEEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhh----hcChhheEec
Confidence 125 899999999887776653 223333444567888888877 777775 3344444443
No 259
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.83 E-value=1.7e-07 Score=96.73 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=153.4
Q ss_pred EEEecC-CCCEEEEEeCCC-----------cEEEEeCCCCcE--EEEec-cCccCEEEEEEeeCCCEEEEEeC-CCcEEE
Q 011256 192 SLDIHY-SKDVIATGGVDT-----------NAVLFDRPSGQI--VTTLS-GHSKKVTSVKFVTEGDLFLTGSA-DKTVRV 255 (490)
Q Consensus 192 ~~~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~l~s~s~-dg~i~i 255 (490)
++++.+ ++++++.|+.++ .+.+||..+++. +..+. .+.....++++..++.+++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 788888887643 588999887653 22221 23333445677789999999884 458999
Q ss_pred EeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CC-----CeEEEEeCCCCeEEEEe----ecCCCCCCCCCce
Q 011256 256 WQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LD-----NTWCFYDLSSGICLTQV----SDAGTDGRPEGYT 325 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~~~~~~v~ 325 (490)
||..+. .+..+..+.... .-.++...++++.++.|+ .+ ..+.+||..+......- .......+
T Consensus 270 yd~~t~-~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~----- 342 (656)
T 1k3i_A 270 YDSSSD-SWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK----- 342 (656)
T ss_dssp EEGGGT-EEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-----
T ss_pred ecCcCC-ceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-----
Confidence 998764 333332222111 123445567899999988 34 56999999988754431 00000000
Q ss_pred EEEEcCCCcEEEEEcCCC---------cEEEEECCCCceeeeecCCC---------CCeEEEEEcC-CCCEEEEEeCC--
Q 011256 326 SAAFHPDGLILGTGTSEA---------LVKIWDVKSQANVAKFDGHV---------GAVTAISFSE-NGYYLATAAHD-- 384 (490)
Q Consensus 326 ~~~~~~~~~~l~~g~~dg---------~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~-~~~~l~~~~~d-- 384 (490)
...+..++.+++.|+.+| .+..||..+........... ..-.++.|.. ++++++.|+.+
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 011223455555554443 56788887765332221111 1234444543 67777877632
Q ss_pred ----------CEEEEECCCCcceeee--ecCCCCCCeeEEEEcCCCCEEEEEecC-------------eEEEEEeecCCc
Q 011256 385 ----------GVKLWDLRKLKNFRSF--ESSDSETPTNSVDFDHSGSYLAVASAD-------------IRVYQVASVKAD 439 (490)
Q Consensus 385 ----------~i~iwd~~~~~~~~~~--~~~~~~~~i~~i~~s~~~~~l~~~~~d-------------i~v~~~~~~~~~ 439 (490)
.|.+||..+....... ... ....-.++...|+++++++|+.+ +.+|+.. ...
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t~~ 499 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--QDT 499 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--GTE
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--CCc
Confidence 2567777665433222 111 11223455667899999998732 6677653 355
Q ss_pred ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC
Q 011256 440 WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 472 (490)
Q Consensus 440 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 472 (490)
|..+...... .....+..+.++|+.++.||.
T Consensus 500 W~~~~~~~~~--R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 500 FYKQNPNSIV--RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECCCCSSC--CCTTEEEEECTTSCEEEEECC
T ss_pred eeecCCCCCc--cccccHhhcCCCcEEEecCCC
Confidence 6655443322 222344567799999999985
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=2e-06 Score=86.82 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=121.3
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEeccCcc-C---------E-EEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 199 KDVIATGGV-DTNAVLFDR-PSGQIVTTLSGHSK-K---------V-TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 199 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
+..+++++. ++.|+.+|. .+|+.+-.+..... . + ..+.. .+..++.++.|+.|..+|..++ +
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG---~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTG---K 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTC---C
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCC---C
Confidence 556666777 899999999 89999877653221 0 0 11222 4567888889999999999886 3
Q ss_pred eeeeec--cccc--ceEE-EEEecCCCEEEEEEC------CCeEEEEeCCCCeEEEEeecCCCC----------------
Q 011256 266 CKHTLK--DHTA--EVQA-VTVHATNKYFVTASL------DNTWCFYDLSSGICLTQVSDAGTD---------------- 318 (490)
Q Consensus 266 ~~~~~~--~h~~--~v~~-l~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~---------------- 318 (490)
.+.... .+.. .+.+ .... +..+++++. ++.|..+|..+++.+..+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 333322 1110 1111 1111 345555554 799999999999988877643110
Q ss_pred -----------------CCCCCceEEEEcCCCcEEEEEcCC----------------CcEEEEECCCCceeeeecCC--C
Q 011256 319 -----------------GRPEGYTSAAFHPDGLILGTGTSE----------------ALVKIWDVKSQANVAKFDGH--V 363 (490)
Q Consensus 319 -----------------~~~~~v~~~~~~~~~~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~~--~ 363 (490)
+.......+++.++...++.++.+ +.|..+|..+++.+-.+... .
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 000001235667766677666532 35999999999988776532 1
Q ss_pred --------CCeEEEEEcCCCC---EEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 364 --------GAVTAISFSENGY---YLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 364 --------~~i~~l~~s~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
.++. +....+|+ .++.++.++ +.++|..+++.+..+..
T Consensus 295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 1221 22224674 567777787 99999999987766544
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=8.6e-06 Score=82.18 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=124.5
Q ss_pred CCEEEEEeC-CCcEEEEeC-CCCcEEEEeccCccC-----------EEEEEEeeCCCE----EEEEeCCCcEEEEeCCCC
Q 011256 199 KDVIATGGV-DTNAVLFDR-PSGQIVTTLSGHSKK-----------VTSVKFVTEGDL----FLTGSADKTVRVWQGSED 261 (490)
Q Consensus 199 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~----l~s~s~dg~i~iwd~~~~ 261 (490)
+..+++++. ++.|+-+|. .+|+.+-++...... ...+.+.|.+.. ++.++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556767777 889999999 899998877533210 123455444444 888889999999999886
Q ss_pred Cccceeeeec--ccc--cceEE-EEEecCCCEEEEEE------CCCeEEEEeCCCCeEEEEeecCCCCC-----------
Q 011256 262 GNYDCKHTLK--DHT--AEVQA-VTVHATNKYFVTAS------LDNTWCFYDLSSGICLTQVSDAGTDG----------- 319 (490)
Q Consensus 262 ~~~~~~~~~~--~h~--~~v~~-l~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~----------- 319 (490)
. .+.... .+. ..+.+ -.+. ++ .+++++ .+|.|+.+|..+|+.+..+.......
T Consensus 142 ~---~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 E---TVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp C---EEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred C---EEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 3 333322 110 01111 1111 33 455554 37999999999999988776432110
Q ss_pred ----------------------CCCCceEEEEcCCCcEEEEEcCC----------------CcEEEEECCCCceeeeecC
Q 011256 320 ----------------------RPEGYTSAAFHPDGLILGTGTSE----------------ALVKIWDVKSQANVAKFDG 361 (490)
Q Consensus 320 ----------------------~~~~v~~~~~~~~~~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~ 361 (490)
....-..+++.++..+++.++.+ +.|..+|..+|+.+-.++.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 00001145666777778877665 3799999999998877653
Q ss_pred CC----------CCeEEEEEc-CCC---CEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 362 HV----------GAVTAISFS-ENG---YYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 362 ~~----------~~i~~l~~s-~~~---~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
.. .++. +... .+| ..++.++.++ ++++|.++++.+....
T Consensus 297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 21 1121 2222 467 4677788888 9999999998876554
No 262
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.77 E-value=1.8e-05 Score=73.19 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=135.9
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCC--cEEEEeCCCCCccce
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADK--TVRVWQGSEDGNYDC 266 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~ 266 (490)
....++|+++++++++...++.|..||... .....+. ....+..+++.++|+++++..... .|..++..++. ...
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~-~~~ 109 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT-VET 109 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-EEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-EEE
Confidence 567899999999777777889999999865 4433333 234688999999999666554332 36666655532 222
Q ss_pred eeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE-EEEeecC----CCCCCCCCceEEEEcCCCcEEE-EEc
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC-LTQVSDA----GTDGRPEGYTSAAFHPDGLILG-TGT 340 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~-~g~ 340 (490)
+..+. .......++..+++..+++-..++.|.++|...+.. +...... .....-.....+ ++++..|+ +-.
T Consensus 110 ~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 22221 122334555555444444444688999999876532 2111100 000111233444 77876554 445
Q ss_pred CCCcEEEEECCC-Cce--eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCccee--eeecCCCCCCeeEEEE
Q 011256 341 SEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFR--SFESSDSETPTNSVDF 414 (490)
Q Consensus 341 ~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~--~~~~~~~~~~i~~i~~ 414 (490)
..+.|..||+.. ++. ...+.. ......++++++|+++++....+ |.+||.. ++... .+... .....+++|
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~--~~~p~~~a~ 262 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG--VIGSTAVAF 262 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT--CTTEEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc--cCCceEEEE
Confidence 678899999874 321 111111 13456789999998766665555 9999975 44322 22221 356889999
Q ss_pred c---CCCCEEEEEecC
Q 011256 415 D---HSGSYLAVASAD 427 (490)
Q Consensus 415 s---~~~~~l~~~~~d 427 (490)
. +++..|++++..
T Consensus 263 ~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 263 GQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCSTTTTTEEEEEECT
T ss_pred ecccCCCCEEEEECCC
Confidence 8 888887776643
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.73 E-value=5.9e-06 Score=83.34 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=97.9
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEeccCcc----CEEE-EEEeeCCCEEEEEe------CCCcEEEEeCCCCCccceeeee
Q 011256 202 IATGGVDTNAVLFDRPSGQIVTTLSGHSK----KVTS-VKFVTEGDLFLTGS------ADKTVRVWQGSEDGNYDCKHTL 270 (490)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~-l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~ 270 (490)
|++++.|+.++.+|..+|+.+-....... .+.+ ..+ .++ .+++++ .+|.|+.+|..++. .+..+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~---~~W~~ 198 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGE---QVWRA 198 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCC---EEEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCc---EEEEE
Confidence 78888899999999999998876543220 1211 111 144 455554 37999999998863 33322
Q ss_pred ccccc-------------------------------------ce-EEEEEecCCCEEEEEECC----------------C
Q 011256 271 KDHTA-------------------------------------EV-QAVTVHATNKYFVTASLD----------------N 296 (490)
Q Consensus 271 ~~h~~-------------------------------------~v-~~l~~~~~~~~l~s~~~d----------------g 296 (490)
..... .+ ..+++.+....++.+..+ +
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 21100 01 134566777777777665 3
Q ss_pred eEEEEeCCCCeEEEEeecCCCCCC----CCCceEEEEc-CCC---cEEEEEcCCCcEEEEECCCCceeeeec
Q 011256 297 TWCFYDLSSGICLTQVSDAGTDGR----PEGYTSAAFH-PDG---LILGTGTSEALVKIWDVKSQANVAKFD 360 (490)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~-~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~ 360 (490)
.|..+|..+|+.+..+........ .....-+... .+| ..++.++.+|.++++|..+|+.+....
T Consensus 279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 899999999999888764321110 0111222332 567 578889999999999999998876553
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=4.8e-06 Score=83.97 Aligned_cols=259 Identities=14% Similarity=0.071 Sum_probs=150.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCc--c--CEEEEEEeeCCCEEEEEeC------CCcEEEEeCCCCCccceee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHS--K--KVTSVKFVTEGDLFLTGSA------DKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~--~v~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 268 (490)
+..+++++.|+.+..+|..+|+.+..+.... . .+.+--...++ .+++++. +|.|..+|..++. .+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGE---LKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCC---EEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECC-EEEEEecCCccCCCCEEEEEECCCCc---EEE
Confidence 5677888889999999999999887654221 0 12110001144 4555554 7899999998863 333
Q ss_pred eeccccc-------------------------------------ce-EEEEEecCCCEEEEEECC---------------
Q 011256 269 TLKDHTA-------------------------------------EV-QAVTVHATNKYFVTASLD--------------- 295 (490)
Q Consensus 269 ~~~~h~~-------------------------------------~v-~~l~~~~~~~~l~s~~~d--------------- 295 (490)
.+..... .+ ..+++.+....++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 2221100 00 135667766777666532
Q ss_pred -CeEEEEeCCCCeEEEEeecCCCCC----CCCCceEEEEcCCCc---EEEEEcCCCcEEEEECCCCceeeeecCCC----
Q 011256 296 -NTWCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPDGL---ILGTGTSEALVKIWDVKSQANVAKFDGHV---- 363 (490)
Q Consensus 296 -g~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---- 363 (490)
+.|..+|..+++.+..+....... .......+....+|+ +++.++.+|.++++|..+++.+..+....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 369999999999988776432110 001122233334673 67788999999999999998876653211
Q ss_pred ---------CCe--------------------------EEEEEcCCCCEEEEEe--------------------------
Q 011256 364 ---------GAV--------------------------TAISFSENGYYLATAA-------------------------- 382 (490)
Q Consensus 364 ---------~~i--------------------------~~l~~s~~~~~l~~~~-------------------------- 382 (490)
.++ ..++|+|+..++++..
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 2357888766666653
Q ss_pred -----------CCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecC
Q 011256 383 -----------HDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 383 -----------~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~ 448 (490)
.++ |..||+.+++....+.... .+....+...+..+++++.+ +.+++. .+.+.+..+..
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~----~tG~~lw~~~~ 503 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDN----KDGKELWNFKM 503 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEET----TTCCEEEEEEC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEEC----CCCCEEEEEeC
Confidence 234 9999999998877766532 22222223346677778777 666665 33444444432
Q ss_pred CCCCcceEEEEEcCCCCeEEE
Q 011256 449 LSGTGKATCVKFGPDAKYIAV 469 (490)
Q Consensus 449 ~~~~~~v~~~~~s~~~~~l~s 469 (490)
.. ...-.-+.+..+|+.++.
T Consensus 504 ~~-~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 504 PS-GGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp SS-CCCSCCEEEEETTEEEEE
T ss_pred CC-CcEeeeEEEEECCEEEEE
Confidence 21 111112335567764443
No 265
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.69 E-value=7.7e-06 Score=85.56 Aligned_cols=194 Identities=9% Similarity=0.017 Sum_probs=114.3
Q ss_pred CeEEEEec-CCCCEEEEEeC-CC----cEEEEeCCCC-cEEE-EeccCccCEEEEEEeeCCCEEEEEeCC-----CcEEE
Q 011256 189 GIVSLDIH-YSKDVIATGGV-DT----NAVLFDRPSG-QIVT-TLSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRV 255 (490)
Q Consensus 189 ~I~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~i 255 (490)
.+....|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....+.|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998876543 33 4999999988 6321 111 113468899999877776655 25777
Q ss_pred EeCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEEC---CCeEEEEeCCCCe-EE--EEeecCCCCCCCCCceEEE
Q 011256 256 WQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL---DNTWCFYDLSSGI-CL--TQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 256 wd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~~~~~v~~~~ 328 (490)
+++.++.. .....+. ........+.|+|+|++|+..+. ...|.++|+.++. .. ..+.. .......++.
T Consensus 252 ~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~----~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP----REKGVRYDVQ 326 (751)
T ss_dssp EETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC----CCTTCCEEEE
T ss_pred EECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec----CCCCceEEEe
Confidence 88866421 1112222 22234678899999998887653 3468888988752 11 22221 1123445566
Q ss_pred EcCCCcEEEEEcCC----CcEEEEECCCCceeee-ecCCCC--CeEEEEEcCCCCEEEEEeCCC---EEEEEC
Q 011256 329 FHPDGLILGTGTSE----ALVKIWDVKSQANVAK-FDGHVG--AVTAISFSENGYYLATAAHDG---VKLWDL 391 (490)
Q Consensus 329 ~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~-~~~~~~--~i~~l~~s~~~~~l~~~~~d~---i~iwd~ 391 (490)
|+.++.+++....+ ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++ |.++|+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55555555555544 3677778765322222 222332 45556664 334555555555 777886
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.65 E-value=3.6e-05 Score=68.30 Aligned_cols=207 Identities=10% Similarity=0.140 Sum_probs=133.9
Q ss_pred eccccCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEecc-CccCEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 011256 180 HPLHKTSKPGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVTEGDLFLTGSADKTVRVWQ 257 (490)
Q Consensus 180 ~~~~~~h~~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd 257 (490)
+++.... ..+..++|+|+++ ++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~-~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGIT-NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCC-SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcc-cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3444443 4699999999766 55557778899999997 888887642 224578889988887767666778899998
Q ss_pred CCCCCccceeeeec------ccccceEEEEEecCCCEEEEEECCCeEEEEeCC---CCeEEEEeecC--CCCCCCCCceE
Q 011256 258 GSEDGNYDCKHTLK------DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGICLTQVSDA--GTDGRPEGYTS 326 (490)
Q Consensus 258 ~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~--~~~~~~~~v~~ 326 (490)
+............. ..+.....|+|.|.++.|+++.......+|.+. ....+...... ........+..
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 87654312122221 234557899999999877777665554555443 11111111110 00012245789
Q ss_pred EEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCC---------CCeEEEEEcCCCCEEEEEeCCC-EEEEE
Q 011256 327 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHV---------GAVTAISFSENGYYLATAAHDG-VKLWD 390 (490)
Q Consensus 327 ~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~l~~~~~d~-i~iwd 390 (490)
++++| .+.+++.......|.++|.. ++.+..+.-.. .....|+|.++|++.++ ++.+ ++.|.
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 99999 45677777788899999965 55555443221 25689999999986555 6666 66664
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=2e-05 Score=79.58 Aligned_cols=198 Identities=17% Similarity=0.096 Sum_probs=119.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCE---------EEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeee
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKV---------TSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHT 269 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---------~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 269 (490)
+..+++++.++.|+.+|..+|+.+-++....... ..+.+ .+..++.++.|+.|..+|..++. .+..
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~---~~W~ 142 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGK---VVWK 142 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCC---EEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCC---EEee
Confidence 4555556664459999999999987775432210 11222 35678888899999999998873 3333
Q ss_pred ecccc--c--ceE-EEEEec---CCC-EEEEEE------CCCeEEEEeCCCCeEEEEeecCCC---------------CC
Q 011256 270 LKDHT--A--EVQ-AVTVHA---TNK-YFVTAS------LDNTWCFYDLSSGICLTQVSDAGT---------------DG 319 (490)
Q Consensus 270 ~~~h~--~--~v~-~l~~~~---~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~---------------~~ 319 (490)
..... . .+. .-.+.. +++ .+++++ .+|.|..+|..+|+.+........ .+
T Consensus 143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 22111 0 111 111111 122 565654 378999999999998876543200 00
Q ss_pred ---------------------CCCCceEEEEcCCCcEEEEEcC--------------------C----CcEEEEECCCCc
Q 011256 320 ---------------------RPEGYTSAAFHPDGLILGTGTS--------------------E----ALVKIWDVKSQA 354 (490)
Q Consensus 320 ---------------------~~~~v~~~~~~~~~~~l~~g~~--------------------d----g~i~iwd~~~~~ 354 (490)
....-..+++.|+..++++++. | +.|..+|..+|+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~ 302 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE 302 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCC
Confidence 0001124567777777776653 2 589999999999
Q ss_pred eeeeecC--CC--------CCeEEEEEc-CCCC---EEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 355 NVAKFDG--HV--------GAVTAISFS-ENGY---YLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 355 ~~~~~~~--~~--------~~i~~l~~s-~~~~---~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
.+-.++. |. .++. +... .+|+ .++.++.++ ++++|..+++.+..+..
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 8877743 21 1221 2221 4674 777888888 99999999887765544
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=1.7e-05 Score=80.16 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=98.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccCcc----CEE-EEEEeeC---CC-EEEEEe------CCCcEEEEeCCCCCc
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSK----KVT-SVKFVTE---GD-LFLTGS------ADKTVRVWQGSEDGN 263 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~---~~-~l~s~s------~dg~i~iwd~~~~~~ 263 (490)
+..+++++.|+.|..+|..+|+.+-....... .+. +.....+ |+ .+++++ .+|.|..+|..++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~- 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE- 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC-
Confidence 56778888999999999999999876653221 111 1111212 22 566654 37899999988763
Q ss_pred cceeeeecccc----------------------------------------c-ceEEEEEecCCCEEEEEEC--------
Q 011256 264 YDCKHTLKDHT----------------------------------------A-EVQAVTVHATNKYFVTASL-------- 294 (490)
Q Consensus 264 ~~~~~~~~~h~----------------------------------------~-~v~~l~~~~~~~~l~s~~~-------- 294 (490)
.+....... . .-..+++.|....++.+..
T Consensus 196 --~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 196 --EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp --EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred --EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 222221100 0 0013566677777776663
Q ss_pred ------------C----CeEEEEeCCCCeEEEEeecCCCCCC----CCCceEEEEc-CCC---cEEEEEcCCCcEEEEEC
Q 011256 295 ------------D----NTWCFYDLSSGICLTQVSDAGTDGR----PEGYTSAAFH-PDG---LILGTGTSEALVKIWDV 350 (490)
Q Consensus 295 ------------d----g~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~~~~~-~~~---~~l~~g~~dg~i~iwd~ 350 (490)
| +.|..+|..+|+.+..+........ .....-+... .+| ..++.++.+|.++++|.
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~ 353 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDR 353 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEET
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEEC
Confidence 2 5899999999999888764321110 0111222222 466 47888999999999999
Q ss_pred CCCceeeeec
Q 011256 351 KSQANVAKFD 360 (490)
Q Consensus 351 ~~~~~~~~~~ 360 (490)
.+|+.+..+.
T Consensus 354 ~tG~~lw~~~ 363 (582)
T 1flg_A 354 SNGKLQNAFP 363 (582)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCEecccc
Confidence 9998876554
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.58 E-value=0.00037 Score=65.49 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=138.2
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEE-EEEeCCCcEEEEeCCCCCccce
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLF-LTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
...+|.+..++ .+|+.+. ...|+..++........+.. ...+..++|++.+..| ++-...+.|..++..... .
T Consensus 34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~ 107 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---V 107 (349)
T ss_dssp TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC---c
Confidence 44567777664 3444443 34688888876555444443 3457899999765544 454567889999887642 1
Q ss_pred eeeecccccceEEEEEecCCCEEE-EEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-cEEEEEcCC-C
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-LILGTGTSE-A 343 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~d-g 343 (490)
...+.........+++.+.+..|+ +-...+.|.+.++........+... ......++++|.+ .++++-... +
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-----l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS-----LEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT-----CSCEEEEEEETTTTEEEEEECSSSC
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC-----CCCcceEEEecCcCeEEEeccCCCC
Confidence 122222223467889987665554 4455688999998765433222211 1456899999855 445554444 7
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEE
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l 421 (490)
.|..+++........+...-...+.|+|+|++..|..+... + |..+|+..... ..+.... ......+++. +..|
T Consensus 183 ~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~-~~~P~giav~--~~~l 258 (349)
T 3v64_C 183 RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG-LPHPFAITVF--EDSL 258 (349)
T ss_dssp EEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-CSSEEEEEEE--TTEE
T ss_pred EEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCC-CCCceEEEEE--CCEE
Confidence 89999876443322222234467899999877777666655 4 99999875332 2222211 3456778773 3355
Q ss_pred EEEecC-eEEEEEe
Q 011256 422 AVASAD-IRVYQVA 434 (490)
Q Consensus 422 ~~~~~d-i~v~~~~ 434 (490)
+.+... .+|+.++
T Consensus 259 y~td~~~~~V~~~~ 272 (349)
T 3v64_C 259 YWTDWHTKSINSAN 272 (349)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEecCCCCeEEEEE
Confidence 555444 4555543
No 270
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.57 E-value=0.00014 Score=64.47 Aligned_cols=204 Identities=10% Similarity=0.098 Sum_probs=128.3
Q ss_pred eecccccceEEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKI 347 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 347 (490)
.+.+-...+..++|+|+++.| ++...++.|...|.. ++.+..+..... .....+++.+++.++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV----KDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC----SSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC----CChHHeEEeCCCEEEEEECCCCcEEE
Confidence 445555689999999987654 557778999999998 877777754322 45778899999987777667788999
Q ss_pred EECCCCce---eeeec------CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC---Ccceeeee-----cCCCCCCe
Q 011256 348 WDVKSQAN---VAKFD------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK---LKNFRSFE-----SSDSETPT 409 (490)
Q Consensus 348 wd~~~~~~---~~~~~------~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~---~~~~~~~~-----~~~~~~~i 409 (490)
+++..... +.... ........|+|+|.+..|+++.+.. ..||.+.. ...+..+. .......+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765432 22221 2344578999999987777777664 45554431 11111111 11113457
Q ss_pred eEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCC-------CcceEEEEEcCCCCeEEEEeCCCcEEEecC
Q 011256 410 NSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSG-------TGKATCVKFGPDAKYIAVGSMDRNLRVFGL 481 (490)
Q Consensus 410 ~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 481 (490)
..++++|....+++-+.. -.+..++. .+..+..+..... ....-.|+|.++|+ |+..++-+.+++|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~---~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTL---VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECT---TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcC---CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 899999987666666655 34444432 2333333222110 13568999999998 445577776666643
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.57 E-value=0.00048 Score=63.77 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=128.1
Q ss_pred CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCC---eEEEEeecCCCCCCCCCceE
Q 011256 251 KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSG---ICLTQVSDAGTDGRPEGYTS 326 (490)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~ 326 (490)
..|+..|+.... ....+. ....+..++|++.+..|+.+. .++.|..+++... .....+.... ......
T Consensus 10 ~~I~~i~~~~~~---~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~~p~g 81 (316)
T 1ijq_A 10 HEVRKMTLDRSE---YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDG 81 (316)
T ss_dssp SSEEEEETTSCC---CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCE
T ss_pred CeEEEEECCCcc---eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC----CCCcCE
Confidence 568888987742 222222 345678999998776666554 4689999998761 2222221111 134578
Q ss_pred EEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-C-C-EEEEECCCCcceeeeec
Q 011256 327 AAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-D-G-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 327 ~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d-~-i~iwd~~~~~~~~~~~~ 402 (490)
+++.+ .+.++++-...+.|.++|+........+.........++++|.+..|+.+.. . + |..+++... ....+..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~ 160 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT 160 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEEC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEE
Confidence 89987 4555566667789999998754433333333456789999986555554443 2 4 888887533 2233322
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 403 SDSETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 403 ~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
. .......+++++++..|+.+... |..++++ ......+..... .......+++. .+.++++-...+.|..+
T Consensus 161 ~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~--~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 161 E-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp S-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTT--TTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred C-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCC--ccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1 13567899999998888887765 5555543 222222222111 12345677775 34455555556778888
Q ss_pred cCCCC
Q 011256 480 GLPGN 484 (490)
Q Consensus 480 ~~~~~ 484 (490)
+..++
T Consensus 235 ~~~~g 239 (316)
T 1ijq_A 235 NRLTG 239 (316)
T ss_dssp ETTTC
T ss_pred eCCCC
Confidence 76433
No 272
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=4.9e-05 Score=73.77 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=97.0
Q ss_pred CEEEEEEee-CCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC-C----eEEEEeCC
Q 011256 231 KVTSVKFVT-EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-N----TWCFYDLS 304 (490)
Q Consensus 231 ~v~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g----~i~iwd~~ 304 (490)
....++|+| ++..|+.+...+.|+.+|.... .+..+.........|+|++++++|+++... + .+.+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 356889997 3555665555588999998763 233333344568899999999966666542 1 34444432
Q ss_pred CCeE-EEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeec-CCCCCeEEEEEcCCCCEEEEE
Q 011256 305 SGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFD-GHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 305 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~ 381 (490)
.... ...+... .....++++| +|.++++-..++.|..||...+....... +.......++|+|+|++|+.+
T Consensus 214 g~~~~~~~l~~~------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 214 SGFKVITELTKG------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp GTSCSEEEEEEC------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred CceeeeeeeccC------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 2111 0122111 3457788999 77877777778899999998765422222 122356899999999977666
Q ss_pred eCC-C-EEEEECC
Q 011256 382 AHD-G-VKLWDLR 392 (490)
Q Consensus 382 ~~d-~-i~iwd~~ 392 (490)
... . |..++..
T Consensus 288 d~~~~~I~~~~~d 300 (430)
T 3tc9_A 288 VVNQHYILRSDYD 300 (430)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 655 3 8887765
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=0.00011 Score=71.39 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=98.0
Q ss_pred CeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC-CC----cEEEEeCCCCC
Q 011256 189 GIVSLDIHY-SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA-DK----TVRVWQGSEDG 262 (490)
Q Consensus 189 ~I~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg----~i~iwd~~~~~ 262 (490)
....++++| ++..|+++...+.|+.+|+..+....... .......++|+++|++|+.+.. ++ .+.+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-- 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-- 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence 346789998 45555555554889999997765544433 4556889999999996555554 22 233344322
Q ss_pred ccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc-EEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGTGT 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~ 340 (490)
.+.....+. .......++++| ++.++++-..++.|..++...+.......... ......++|+|+|+ ++++-.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~----~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD----SGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS----SSCCEEEEECTTSSEEEEEET
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC----CCcceeEEEcCCCCEEEEEEC
Confidence 112112222 123457788999 66666666677899999998776533222111 13467899999999 455555
Q ss_pred CCCcEEEEECC
Q 011256 341 SEALVKIWDVK 351 (490)
Q Consensus 341 ~dg~i~iwd~~ 351 (490)
..+.|..++..
T Consensus 290 ~~~~I~~~~~d 300 (430)
T 3tc9_A 290 NQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEeCC
Confidence 67889998765
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.52 E-value=1.1e-05 Score=83.15 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=137.2
Q ss_pred EEEEee-CCCEEEEEeCCC-----------cEEEEeCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEEC-CCeEE
Q 011256 234 SVKFVT-EGDLFLTGSADK-----------TVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL-DNTWC 299 (490)
Q Consensus 234 ~l~~~~-~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~-dg~i~ 299 (490)
++++.+ ++++++.|+.++ .+.+||..++ .+..+..+. .+.....++++..++..++.|+. ++.+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC-cEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 556677 888888887643 5889998874 333333332 22233345677789999999984 56899
Q ss_pred EEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CC-----CcEEEEECCCCceeeee----cCCCCCeEEE
Q 011256 300 FYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-----ALVKIWDVKSQANVAKF----DGHVGAVTAI 369 (490)
Q Consensus 300 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~i~~l 369 (490)
+||..+......-... ....-.++++.+++++++.|+ .+ ..+.+||..+++-...- ......-...
T Consensus 269 ~yd~~t~~W~~~~~~~----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp EEEGGGTEEEECCCCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred EecCcCCceeECCCCC----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 9999887655432211 112334567778999999998 34 46899999876532210 0000000001
Q ss_pred EEcCCCCEEEEEeCC----------CEEEEECCCCcceeeeecCCC-------CCCeeEEEEcC-CCCEEEEEecC----
Q 011256 370 SFSENGYYLATAAHD----------GVKLWDLRKLKNFRSFESSDS-------ETPTNSVDFDH-SGSYLAVASAD---- 427 (490)
Q Consensus 370 ~~s~~~~~l~~~~~d----------~i~iwd~~~~~~~~~~~~~~~-------~~~i~~i~~s~-~~~~l~~~~~d---- 427 (490)
.+..++..++.++.+ .+..||..+............ ...-.++.|.. +++++++|+.+
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 122344444444322 278888877654332221110 11224445543 67777777632
Q ss_pred -------eEEEEEeecCCcceEee--eecCCCCCcceEEEEEcCCCCeEEEEeCC-----------CcEEEecCCCC
Q 011256 428 -------IRVYQVASVKADWNCIK--TFPDLSGTGKATCVKFGPDAKYIAVGSMD-----------RNLRVFGLPGN 484 (490)
Q Consensus 428 -------i~v~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----------g~v~iw~~~~~ 484 (490)
..++.++.....|..+. .... ...-.+++..|++++++.||.+ ..+.+||...+
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~---~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYF---ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSS---CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCC---CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 14444444444565543 2211 1122355677899999999865 45788887543
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=3.4e-05 Score=80.66 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=111.6
Q ss_pred CEEEEEEe-eCCCEEEEEeC-CC----cEEEEeCCCC-CccceeeeecccccceEEEEEecCCCEEEEEECC-----CeE
Q 011256 231 KVTSVKFV-TEGDLFLTGSA-DK----TVRVWQGSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTW 298 (490)
Q Consensus 231 ~v~~l~~~-~~~~~l~s~s~-dg----~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i 298 (490)
.+....|| |||++|+.+.. +| +|+++|+.++ ... ...+. .....+.|+|+++.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--Ccccc---CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57889999 99998775543 33 4999999875 311 11111 123468899999888877665 368
Q ss_pred EEEeCCCCeE--EEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC---CCcEEEEECCCCc-ee--eee-cCCCCCeEEE
Q 011256 299 CFYDLSSGIC--LTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---EALVKIWDVKSQA-NV--AKF-DGHVGAVTAI 369 (490)
Q Consensus 299 ~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~-~~--~~~-~~~~~~i~~l 369 (490)
+++++.++.. ...+... .......+.|+|||++|+.... ...|+++|+.++. .. ..+ ....+...++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~----~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEH----NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEETTSCGGGCEEEEECC----CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred EEEECCCCchhcEEEEecC----CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 8888877642 2222211 1134567899999998876552 3468889998752 12 333 3344556666
Q ss_pred EEcCCCCEEEEEeCC--C---EEEEECCCCcceee-eecCCCCCCeeEEEEcCCCCEEEE-EecC--eEEEEEe
Q 011256 370 SFSENGYYLATAAHD--G---VKLWDLRKLKNFRS-FESSDSETPTNSVDFDHSGSYLAV-ASAD--IRVYQVA 434 (490)
Q Consensus 370 ~~s~~~~~l~~~~~d--~---i~iwd~~~~~~~~~-~~~~~~~~~i~~i~~s~~~~~l~~-~~~d--i~v~~~~ 434 (490)
.|+.++.+++.+..+ + |..+|+.+...... +..+.....+..+.+. +..|+. ...+ .++|.++
T Consensus 326 ~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 326 QMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEE
T ss_pred eeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEe
Confidence 665555555555543 2 77778765322222 2222212234555554 445444 4444 4555543
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.49 E-value=6.5e-05 Score=69.17 Aligned_cols=194 Identities=14% Similarity=0.249 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeC----CC---EEEEEe-C--CCcEEEEeCCCCCcccee
Q 011256 198 SKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTE----GD---LFLTGS-A--DKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~---~l~s~s-~--dg~i~iwd~~~~~~~~~~ 267 (490)
...+++.....+-+.+||+ +|+.++.+.. +.++.+..-|+ |+ ++++.. . +++|.+|++.... ..+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cce
Confidence 3456666667788999999 8999998864 56777777662 22 223333 3 5789999774221 122
Q ss_pred eeecc------cc-cceEEEEE--ecC-CC-EEEEEECCCeEEEEeCC-------CCeEEEEeecCCCCCCCCCceEEEE
Q 011256 268 HTLKD------HT-AEVQAVTV--HAT-NK-YFVTASLDNTWCFYDLS-------SGICLTQVSDAGTDGRPEGYTSAAF 329 (490)
Q Consensus 268 ~~~~~------h~-~~v~~l~~--~~~-~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (490)
..+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+..+... ..+..+..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg------sq~Egcvv 187 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN------SQTEGMAA 187 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS------SCEEEEEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC------CCcceEEE
Confidence 22211 11 45666777 664 43 68888889999999883 33455666543 56788899
Q ss_pred cCCCcEEEEEcCCCcEEEEECC-----CCceeeeec-C-CCCCeEEEEE--cCCCC-EEEEEeCC-C-EEEEECC-CCcc
Q 011256 330 HPDGLILGTGTSEALVKIWDVK-----SQANVAKFD-G-HVGAVTAISF--SENGY-YLATAAHD-G-VKLWDLR-KLKN 396 (490)
Q Consensus 330 ~~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~-~-~~~~i~~l~~--s~~~~-~l~~~~~d-~-i~iwd~~-~~~~ 396 (490)
.+....|+++-++.-|..||.+ +++.+..+. + ....+..|++ .+++. +|++++.+ . +.+||.. +.+.
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~ 267 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY 267 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence 9988899999998777777855 344554442 2 2236888888 45555 67777654 3 9999996 5666
Q ss_pred eeeeec
Q 011256 397 FRSFES 402 (490)
Q Consensus 397 ~~~~~~ 402 (490)
+..|..
T Consensus 268 vg~f~I 273 (355)
T 3amr_A 268 VADFRI 273 (355)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666643
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00074 Score=62.49 Aligned_cols=216 Identities=7% Similarity=-0.004 Sum_probs=127.2
Q ss_pred CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCc-cceeeeecccccceEEEEEecCC
Q 011256 209 TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
..|+..|+........+.. ...+..++|++.+. ++++-..++.|..++...... ......+.........+++.+.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 5688899887766555543 45578999998655 445555678899998875100 01111222222356789998755
Q ss_pred CEEE-EEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CC-CcEEEEECCCCceeeee-cCC
Q 011256 287 KYFV-TASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQANVAKF-DGH 362 (490)
Q Consensus 287 ~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~d-g~i~iwd~~~~~~~~~~-~~~ 362 (490)
..|+ +-...+.|.++++........+... ......++++|.+..|+... .. +.|..+++.. .....+ ...
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~ 162 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFREN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN 162 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECT-----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSS
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECC-----CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECC
Confidence 5554 4456789999998765433333211 14568999998655444443 33 6888888753 333333 223
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeec-CCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEe
Q 011256 363 VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFES-SDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA 434 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~-~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 434 (490)
-...+.|++++++..|+.+... + |..+|+... ....+.. .........++++ +..++.+... -+|+.++
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEe
Confidence 3567899999987777766655 4 999998743 2333322 1112345678875 3445554443 4444443
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.46 E-value=0.00026 Score=66.56 Aligned_cols=204 Identities=10% Similarity=-0.002 Sum_probs=125.9
Q ss_pred CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccce
Q 011256 189 GIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDC 266 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 266 (490)
.+..++|++.+..|+ +-...+.|..+++..+.....+.........+++.+.+ .++++-...+.|.+.+++... .
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~ 150 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---R 150 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---C
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---e
Confidence 478999997665554 44567889999987665444443333445788888754 455565667889999987632 2
Q ss_pred eeeecccccceEEEEEecCCCEEEEEEC-C-CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE-EEcCCC
Q 011256 267 KHTLKDHTAEVQAVTVHATNKYFVTASL-D-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSEA 343 (490)
Q Consensus 267 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg 343 (490)
...+.........|+++|.+..|+.... . +.|..+++.......... . .-.....++++|++..|+ +-...+
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~----~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-T----HLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-S----SCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-C----CCCCcceEEEeCCCCEEEEEECCCC
Confidence 2222233356789999997766665543 4 788888876543222211 1 114568999998655554 445567
Q ss_pred cEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeee
Q 011256 344 LVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFE 401 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~ 401 (490)
.|..+|+........+.........+++. .+.++++-...+ |..+|..+++....+.
T Consensus 226 ~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 226 VIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 89999986543333333334456788883 444444444444 8888866666555554
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.46 E-value=0.00022 Score=69.09 Aligned_cols=235 Identities=12% Similarity=0.117 Sum_probs=133.3
Q ss_pred CeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC---Cc-EEEEeCCCCC
Q 011256 189 GIVSLDIHYS--KDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD---KT-VRVWQGSEDG 262 (490)
Q Consensus 189 ~I~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---g~-i~iwd~~~~~ 262 (490)
.-..++|+|+ +..|+.+...+.|+.+|..++....... .......++|+++|+++++.... .. +...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-- 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-- 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG--
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC--
Confidence 3468899984 4445444444899999998776655443 45568999999999954444321 11 33333221
Q ss_pred ccceeeeecccccceEEEEEec-CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCc-EEEEEc
Q 011256 263 NYDCKHTLKDHTAEVQAVTVHA-TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGL-ILGTGT 340 (490)
Q Consensus 263 ~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~ 340 (490)
.+.....+. .......++++| ++.++++-..++.|+.+|..++.....+..... ......++|+|+++ ++++-.
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTTSSEEEEEET
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCCCCEEEEEeC
Confidence 111111111 223456788999 666666656678999999987766333321111 12235799999998 445555
Q ss_pred CCCcEEEEECCC--Cce--eeeecCC---------------CCCeEEEEE---------cCCCCEEEEEeCCC-EEEEEC
Q 011256 341 SEALVKIWDVKS--QAN--VAKFDGH---------------VGAVTAISF---------SENGYYLATAAHDG-VKLWDL 391 (490)
Q Consensus 341 ~dg~i~iwd~~~--~~~--~~~~~~~---------------~~~i~~l~~---------s~~~~~l~~~~~d~-i~iwd~ 391 (490)
..+.|+.+++.. +.. ...+.+. -.....+++ .++|.++++-..+. |+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 668899988652 221 1111111 123567999 66676666655555 888885
Q ss_pred CCCcceeeeecCC----------------CCCCeeEEEEc-CCCCEEEEEecC--eEEEE
Q 011256 392 RKLKNFRSFESSD----------------SETPTNSVDFD-HSGSYLAVASAD--IRVYQ 432 (490)
Q Consensus 392 ~~~~~~~~~~~~~----------------~~~~i~~i~~s-~~~~~l~~~~~d--i~v~~ 432 (490)
++.. ..+.... .-.....++++ ++|.++++-..+ |+.++
T Consensus 373 -~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 373 -EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp -TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred -CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 3432 2222110 01246789999 455444443333 44444
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.45 E-value=0.00049 Score=65.65 Aligned_cols=222 Identities=8% Similarity=-0.014 Sum_probs=131.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRP 321 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 321 (490)
+|+.+ ....|+.+++.... ..... .....+..++|++.+..|+.+. ..+.|..+++..+.....+... .
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~---~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~-~---- 158 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSE---YTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG-L---- 158 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCC---CEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS-C----
T ss_pred eeEee-cCccceeeccCCCc---EEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC-C----
Confidence 34433 34678888886642 22222 2334588999998766666554 5688999998876543333211 1
Q ss_pred CCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-C-C-EEEEECCCCcce
Q 011256 322 EGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-D-G-VKLWDLRKLKNF 397 (490)
Q Consensus 322 ~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d-~-i~iwd~~~~~~~ 397 (490)
.....+++.+. +.++++-...+.|.++++........+.........++++|.+..|+.+.. . + |..+++......
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 34567888874 555666666788999888654433333334456799999987665555443 3 4 888887643322
Q ss_pred eeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 398 RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
...... ......++|+|++..|+.+... -+|+.++........+. .. .......+++. .+.++++-...+.|
T Consensus 239 ~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~--~~--~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 239 IIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI--SQ--GLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp EEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE--CS--SCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE--EC--CCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 222211 3457899999988888887665 44444432222222121 11 13356778873 44455555566778
Q ss_pred EEecC
Q 011256 477 RVFGL 481 (490)
Q Consensus 477 ~iw~~ 481 (490)
..++.
T Consensus 312 ~~~~~ 316 (386)
T 3v65_B 312 NSANK 316 (386)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 77774
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.44 E-value=0.0014 Score=62.86 Aligned_cols=225 Identities=7% Similarity=-0.041 Sum_probs=132.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEE-EEeCCCcEEEEeCCCCCcc-ceeeeecccccce
Q 011256 200 DVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFL-TGSADKTVRVWQGSEDGNY-DCKHTLKDHTAEV 277 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v 277 (490)
.+|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++...... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3444443 4678888987665554444 445688999998655444 4445688888888652110 1122222234567
Q ss_pred EEEEEecCCCEE-EEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-C-CCcEEEEECCCCc
Q 011256 278 QAVTVHATNKYF-VTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-S-EALVKIWDVKSQA 354 (490)
Q Consensus 278 ~~l~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~-dg~i~iwd~~~~~ 354 (490)
..|++.+.+..| ++-...+.|.+.++........+... . .....++++|.+..|+... . .+.|...++....
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-~----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-G----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS-S----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC-C----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 889999855544 44456789999998866544443321 1 4578999999655555443 2 4789999886543
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEE
Q 011256 355 NVAKFDGHVGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVY 431 (490)
Q Consensus 355 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~ 431 (490)
....+...-...+.|++++++..|+.+... . |..+|+....................+++. +..|+..... -+|+
T Consensus 237 ~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 237 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 314 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEE
T ss_pred cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEE
Confidence 333333334567999999887777777655 3 999998654333233222122345567763 3445444443 3344
Q ss_pred EE
Q 011256 432 QV 433 (490)
Q Consensus 432 ~~ 433 (490)
.+
T Consensus 315 ~~ 316 (400)
T 3p5b_L 315 SA 316 (400)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.44 E-value=0.00073 Score=64.78 Aligned_cols=227 Identities=11% Similarity=0.021 Sum_probs=133.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCe----EEEEeecCCC
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGI----CLTQVSDAGT 317 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~~~~ 317 (490)
+|+.+. ...|+..++.... . ..+......+..|+|++.+..|+.+. ..+.|..+++.... ....+. .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~---~-~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~-- 156 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE---Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-R-- 156 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS---C-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-S--
T ss_pred eeEEec-cceeEEEccCCcc---e-eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-C--
Confidence 444443 4678888887642 1 12223445788999998777666665 46789999887522 222221 1
Q ss_pred CCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe-CC-C-EEEEECCC
Q 011256 318 DGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HD-G-VKLWDLRK 393 (490)
Q Consensus 318 ~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d-~-i~iwd~~~ 393 (490)
.......+++.+ .++++++-...+.|.+.++........+.........|++.|.+.+|+... .. + |...++..
T Consensus 157 --~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 157 --DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp --SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred --CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 114567899988 566666666778999999876554444443445678999999655555554 32 3 88888865
Q ss_pred CcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC
Q 011256 394 LKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 472 (490)
Q Consensus 394 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 472 (490)
......+.. .......+++++++..|+.+... -+|+.++........+..... ......++++. .+.++++-..
T Consensus 235 ~~~~~~~~~--~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 235 VDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp CSCEEEECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS--TTSSEEEEEEE-TTEEEEEESS
T ss_pred CccEEEEEC--CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC--CCCCCEEEEEe-CCEEEEecCC
Confidence 433222222 13567899999998888888765 344444322222222222111 12345677773 3344555555
Q ss_pred CCcEEEecCCCC
Q 011256 473 DRNLRVFGLPGN 484 (490)
Q Consensus 473 dg~v~iw~~~~~ 484 (490)
.+.|..++..++
T Consensus 310 ~~~V~~~~~~~G 321 (400)
T 3p5b_L 310 NEAIFSANRLTG 321 (400)
T ss_dssp SCSEEEEESSSC
T ss_pred CCeEEEEEcCCC
Confidence 677888874443
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.42 E-value=0.00016 Score=70.10 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=134.9
Q ss_pred CEEEEEEeeC--CCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCC-----eEEEEeC
Q 011256 231 KVTSVKFVTE--GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDL 303 (490)
Q Consensus 231 ~v~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~ 303 (490)
....++|.|+ +..|+.+...+.|+.++..++ .+..+........+++++++++ |+.+...+ .+..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g----~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ----YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT----EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC----EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 3568999984 344555544488999998663 2333333445689999999999 44444321 2333332
Q ss_pred CCCeE-EEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeee-c-CCCCCeEEEEEcCCCCEEE
Q 011256 304 SSGIC-LTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKF-D-GHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 304 ~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~-~~~~~i~~l~~s~~~~~l~ 379 (490)
..+.. ...+.. -.....++++| +|.++++-..++.|+.+|..++.....+ . +....-..++|+|+|.+|+
T Consensus 215 ~~~~~~~~~~~~------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 215 ASGFTERLSLCN------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp GGTTCCEEEEEE------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred CCCeeccccccc------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 22111 011111 13456788999 7777777667789999999877652222 1 1222335799999999777
Q ss_pred EEeCC-C-EEEEECCC--Ccc--eeeeecC-C------------CCCCeeEEEE---------cCCCCEEEEEecCeEEE
Q 011256 380 TAAHD-G-VKLWDLRK--LKN--FRSFESS-D------------SETPTNSVDF---------DHSGSYLAVASADIRVY 431 (490)
Q Consensus 380 ~~~~d-~-i~iwd~~~--~~~--~~~~~~~-~------------~~~~i~~i~~---------s~~~~~l~~~~~di~v~ 431 (490)
.+... . |+.+++.. ... ...+... . .-.....+++ +++|.+.++-..+-+|.
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 66655 4 88888652 211 1111111 0 0123567898 67776665555554444
Q ss_pred EEeecCCcceEeeeecCC----------------CCCcceEEEEEc-CCCCeEEEEeCCCcEEEecCC
Q 011256 432 QVASVKADWNCIKTFPDL----------------SGTGKATCVKFG-PDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~s-~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.++. ..... .+.+. ........++++ ++|.++++=...+.|+.++++
T Consensus 369 ~~~~---~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP---EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT---TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC---CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4432 22211 11110 002347889999 566666655567788888764
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.41 E-value=0.00025 Score=67.76 Aligned_cols=206 Identities=10% Similarity=-0.000 Sum_probs=127.4
Q ss_pred CCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccc
Q 011256 188 PGIVSLDIHYSKDV-IATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 188 ~~I~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
..+..++|++.+.. +++-...+.|..+++..+.....+.........+++.+.+. ++++-...+.|.+.+++.. .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---~ 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---H 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---S
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---c
Confidence 35778999976554 44545678899999876654444443334456788887544 5555556778888887653 1
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEEC-C-CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE-EEEcCC
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASL-D-NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTSE 342 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~d 342 (490)
....+.........|++.|.+..|+.+.. . +.|..+++............ -.....++++|++..| ++-...
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-----~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-----LFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-----CSCEEEEEEEGGGTEEEEEETTT
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-----CCCeeeEEEeCCCCEEEEEECCC
Confidence 22222233356789999997776666554 3 67888888754333222211 1456889999865544 444556
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
+.|..+|+........+.........|++. .+.++++....+ |..+|..+++....+..
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 268 HVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 789999986543333333334456788883 444445544444 88888666666555543
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.0002 Score=69.82 Aligned_cols=243 Identities=11% Similarity=0.116 Sum_probs=135.3
Q ss_pred EEEEEEee-CCC-EEEEEeCCCcEEEEeCCCCCccceeeeec-c---cccceEEEEE-------ecCCCEEEEEECCC--
Q 011256 232 VTSVKFVT-EGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLK-D---HTAEVQAVTV-------HATNKYFVTASLDN-- 296 (490)
Q Consensus 232 v~~l~~~~-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~---h~~~v~~l~~-------~~~~~~l~s~~~dg-- 296 (490)
...|+|.| ++. ++++....+.|++.|...+ .+..+. . .......|+| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~----~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR----MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTT----EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCC----EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 56889998 344 4444444467888888774 222222 1 2235899999 99999777776654
Q ss_pred -----eEEEEeCCC-CeEE-----EEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEECC-------CCce--
Q 011256 297 -----TWCFYDLSS-GICL-----TQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWDVK-------SQAN-- 355 (490)
Q Consensus 297 -----~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~-------~~~~-- 355 (490)
.|.+++... +... ..+... .....++++| ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccC------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 266665443 1211 112111 2346788999 56667777788899999987 4543
Q ss_pred ---------eee-e-cCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCC--Ccc--eeeeecC-C------------C
Q 011256 356 ---------VAK-F-DGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRK--LKN--FRSFESS-D------------S 405 (490)
Q Consensus 356 ---------~~~-~-~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~--~~~--~~~~~~~-~------------~ 405 (490)
... + .+.....+.|+|+|+|.+|+.+.... |+.+|... ... ...+-.. . .
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence 111 1 12234568999999999766666553 88865432 211 0111111 0 0
Q ss_pred CCCee-EEEEc-------CCCCEEEEEecCeEEEEEeecCCcceEeeeecCC--------------C--------CCcce
Q 011256 406 ETPTN-SVDFD-------HSGSYLAVASADIRVYQVASVKADWNCIKTFPDL--------------S--------GTGKA 455 (490)
Q Consensus 406 ~~~i~-~i~~s-------~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~--------------~--------~~~~v 455 (490)
-.... .+..+ ++|.+.++-..+-+|..++. ... +.++.+. . .....
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~---~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP---EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT---TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC---CCC-EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 11233 45554 44555554444434444432 111 1111110 0 12347
Q ss_pred EEEEEcCC-CCeEEEEeCCCcEEEecCCCCCCCC
Q 011256 456 TCVKFGPD-AKYIAVGSMDRNLRVFGLPGNDAPS 488 (490)
Q Consensus 456 ~~~~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~ 488 (490)
..|+++++ |.+.++=.....|+.++++......
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 89999997 6666655667889999998766543
No 286
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.36 E-value=5.2e-05 Score=70.83 Aligned_cols=170 Identities=9% Similarity=0.099 Sum_probs=100.9
Q ss_pred CCCcEEEEeCCCCC-ccceeeeecc-----cccceEEEEEec--CCC-EEEEEE-C--CCeEEEEeCCCC--eEEEEeec
Q 011256 249 ADKTVRVWQGSEDG-NYDCKHTLKD-----HTAEVQAVTVHA--TNK-YFVTAS-L--DNTWCFYDLSSG--ICLTQVSD 314 (490)
Q Consensus 249 ~dg~i~iwd~~~~~-~~~~~~~~~~-----h~~~v~~l~~~~--~~~-~l~s~~-~--dg~i~iwd~~~~--~~~~~~~~ 314 (490)
.+|.|.++|..+.. ....+ .+.+ ..-....|.+.+ ++. +|+++. . +.+|.+|++... .....-..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 68899999987421 11222 2222 234677888776 343 454443 2 467788776543 22211111
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEEc-----------------CCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCE
Q 011256 315 AGTDGRPEGYTSAAFHPDGLILGTGT-----------------SEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYY 377 (490)
Q Consensus 315 ~~~~~~~~~v~~~~~~~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 377 (490)
. ...-...+.+.+.++|.+.++.. ..|.|+.+|.. +. ..+...-...+.++|+||++.
T Consensus 160 ~--g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 160 R--HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp C--CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSE
T ss_pred c--cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCE
Confidence 1 11225678999999999877754 12556666653 32 222222346789999999998
Q ss_pred EEEEeCC-C-EEEEECCCC-c--ceeeeecCCCCCCeeEEEEcC-CCCEEEEEecC
Q 011256 378 LATAAHD-G-VKLWDLRKL-K--NFRSFESSDSETPTNSVDFDH-SGSYLAVASAD 427 (490)
Q Consensus 378 l~~~~~d-~-i~iwd~~~~-~--~~~~~~~~~~~~~i~~i~~s~-~~~~l~~~~~d 427 (490)
|+++... + |..||+... . ....+.. ......+++++ +|++.+++..+
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCCEEEEEESC
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCcEEEEecCC
Confidence 8887765 3 999998642 2 1223322 45678899999 59988766544
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.30 E-value=0.0005 Score=62.74 Aligned_cols=202 Identities=9% Similarity=0.114 Sum_probs=124.3
Q ss_pred EEEEecCCCCEEEEEe-CCCcEEEEeCCCCcEEEE-ecc----Cc--cCEEEEEE---eeCCCEEEEEe-----------
Q 011256 191 VSLDIHYSKDVIATGG-VDTNAVLFDRPSGQIVTT-LSG----HS--KKVTSVKF---VTEGDLFLTGS----------- 248 (490)
Q Consensus 191 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~l~s~s----------- 248 (490)
-+++|++....+..++ ..|.|..|+...+..... +.+ .. ..+..|.| .|++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3678988666666665 789999999876644333 222 11 13578999 58877777543
Q ss_pred --CCCcEEEEeCC---CCCccceeeeecccc-----------cceEEEEEecCCCEEEEEECC-CeEEEEeCCCCeEEEE
Q 011256 249 --ADKTVRVWQGS---EDGNYDCKHTLKDHT-----------AEVQAVTVHATNKYFVTASLD-NTWCFYDLSSGICLTQ 311 (490)
Q Consensus 249 --~dg~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~l~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~ 311 (490)
.++.|..||+. ++.. .....+.... .....++..++|+..++++.. +.|..++.........
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeee
Confidence 25779999988 4422 1112222111 248899999999999999988 8888888765432222
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce--eeee-cCC---CCCeEEE-EEcCCCCEEEEE-eC
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKF-DGH---VGAVTAI-SFSENGYYLATA-AH 383 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~-~~~---~~~i~~l-~~s~~~~~l~~~-~~ 383 (490)
.............+.++++|+|.+|++....|.|..+|+..... +..- .+. -.....| ..-.+|+.|+++ ..
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 21111112234578999999999888887799999999885432 2111 021 1223443 333367774444 44
Q ss_pred CC-EEEEECCC
Q 011256 384 DG-VKLWDLRK 393 (490)
Q Consensus 384 d~-i~iwd~~~ 393 (490)
.+ +.+.+...
T Consensus 255 ~~~~~l~S~Dg 265 (334)
T 2p9w_A 255 PYAISFRSWDN 265 (334)
T ss_dssp TEEEEEECSST
T ss_pred CCEEEEECCCC
Confidence 45 55554433
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.29 E-value=0.0014 Score=60.56 Aligned_cols=223 Identities=7% Similarity=-0.027 Sum_probs=129.7
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEE
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (490)
...|+..++..... ....+......+..++|++.+..|+.+. ..+.|..+++..+.....+..... .....++
T Consensus 12 ~~~I~~i~l~~~~~--~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l----~~p~gla 85 (318)
T 3sov_A 12 RRDLRLVDATNGKE--NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL----LSPDGLA 85 (318)
T ss_dssp EEEEEEEETTCTTS--CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC----SCCCEEE
T ss_pred cCeEEEEECCCCce--EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC----CCccEEE
Confidence 46788999876421 1111112224577899998766555554 567899999876632111111101 3457889
Q ss_pred EcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC--CC-EEEEECCCCcceeeeecCC
Q 011256 329 FHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH--DG-VKLWDLRKLKNFRSFESSD 404 (490)
Q Consensus 329 ~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--d~-i~iwd~~~~~~~~~~~~~~ 404 (490)
+.+ .+.++++-...+.|.++++........+.........+++.|.+.+|+.+.. .+ |..+++.... ...+...
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~- 163 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINS- 163 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECS-
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEEC-
Confidence 987 5566666667789999998654333333334456789999987555555553 23 8888876432 2222211
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 405 SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.-...+.+++++++..|+.+... -+|+.++........+. .. .......+++.. +.++++-...+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~--~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--KG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe--cC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 13457899999988888887765 44444332222222222 11 134556777753 34444555567788888754
Q ss_pred CC
Q 011256 484 ND 485 (490)
Q Consensus 484 ~~ 485 (490)
+.
T Consensus 239 G~ 240 (318)
T 3sov_A 239 GE 240 (318)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.28 E-value=0.00026 Score=65.20 Aligned_cols=186 Identities=16% Similarity=0.291 Sum_probs=121.7
Q ss_pred CCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC----Cc---EEEEEcC---CCcEEEEECC--C
Q 011256 285 TNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD----GL---ILGTGTS---EALVKIWDVK--S 352 (490)
Q Consensus 285 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~g~~---dg~i~iwd~~--~ 352 (490)
....++.....+-+.+||+ +|+.+..+.. ..++.+.+-|+ |. ++++... ++.|.+|++. +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 3456777778889999999 7888877642 34566666552 22 3333333 5789999773 3
Q ss_pred CceeeeecC------CC-CCeEEEEE--cCC-CC-EEEEEeCCC-EEEEECC-------CCcceeeeecCCCCCCeeEEE
Q 011256 353 QANVAKFDG------HV-GAVTAISF--SEN-GY-YLATAAHDG-VKLWDLR-------KLKNFRSFESSDSETPTNSVD 413 (490)
Q Consensus 353 ~~~~~~~~~------~~-~~i~~l~~--s~~-~~-~l~~~~~d~-i~iwd~~-------~~~~~~~~~~~~~~~~i~~i~ 413 (490)
+ .+..+.. .. ..+..+|+ +|. +. ++++...++ +..|++. +.+.++.|.. ...+-.+.
T Consensus 111 ~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egcv 186 (355)
T 3amr_A 111 G-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMA 186 (355)
T ss_dssp C-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEE
T ss_pred C-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEE
Confidence 3 3444421 11 45677887 664 43 677777777 8888883 3355677776 45788999
Q ss_pred EcCCCCEEEEEecCeEEEEEeecCC---cceEeeeecCCCCCcceEEEEE--cCCCC-eEEEEe-CCCcEEEecCC
Q 011256 414 FDHSGSYLAVASADIRVYQVASVKA---DWNCIKTFPDLSGTGKATCVKF--GPDAK-YIAVGS-MDRNLRVFGLP 482 (490)
Q Consensus 414 ~s~~~~~l~~~~~di~v~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~s~~-~dg~v~iw~~~ 482 (490)
.++....|+++-.+.-||.++.... ....+..+........+..|++ .++++ ||++++ .+..+.+|+..
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999999999966998874322 2344444322111346788887 45666 666666 56789999986
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.27 E-value=0.001 Score=61.57 Aligned_cols=205 Identities=8% Similarity=-0.006 Sum_probs=125.1
Q ss_pred CeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcE-EEEeccCccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCccc
Q 011256 189 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 189 ~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
....++|++.+. ++++-...+.|..++...+.. ...+.........+++.+. +.++++-...+.|.+++++...
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 112 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--- 112 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence 456889998654 555555678899998876532 1122222234567888864 4555555667889999987631
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE-EEcCC
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG-TGTSE 342 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d 342 (490)
....+.........+++.|.+..|+.+.. .+.|..+++............ -.....+++++++..|+ +-...
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-----l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-----IYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSS-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECC-----CCCccEEEEeccCCEEEEEECCC
Confidence 11222233456789999998777766653 578888888643322222111 14568999999655554 44566
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
+.|..+|+..........+.......+++.. +.++++-...+ |..+|..+++....+..
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 7899999864332222233344567788753 34444443444 88899877776555543
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.20 E-value=0.0074 Score=61.23 Aligned_cols=284 Identities=8% Similarity=-0.018 Sum_probs=155.8
Q ss_pred CCeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeC--CCcEEEEeCCCCCcc
Q 011256 188 PGIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSA--DKTVRVWQGSEDGNY 264 (490)
Q Consensus 188 ~~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~ 264 (490)
.....+++.+.++ ++++-...+.|.+.++........+...-.....|++.|.+..|+.... .+.|...+++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-- 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-- 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS--
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc--
Confidence 3567899998555 5555566789999998654333333334455778999987555555443 3566666665532
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
........-.....|++.+++..|+.+. ..+.|..+|+.......... . .. .....+++..+ .++++-...+
T Consensus 162 -~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~-~~---~~P~gi~~~~~-~ly~td~~~~ 234 (619)
T 3s94_A 162 -RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-G-SL---PHPFALTLFED-ILYWTDWSTH 234 (619)
T ss_dssp -CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTC
T ss_pred -eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-C-CC---CCceEEEEeCC-EEEEecCCCC
Confidence 1111222334678999999877666664 45789999987644332221 1 11 22346677665 5555555677
Q ss_pred cEEEEECCCCceeeeecC-----------CC--------------CCeEEEE-----------EcCCC------------
Q 011256 344 LVKIWDVKSQANVAKFDG-----------HV--------------GAVTAIS-----------FSENG------------ 375 (490)
Q Consensus 344 ~i~iwd~~~~~~~~~~~~-----------~~--------------~~i~~l~-----------~s~~~------------ 375 (490)
.|...|..+++....+.. |. +....++ .+|.|
T Consensus 235 ~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~ 314 (619)
T 3s94_A 235 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD 314 (619)
T ss_dssp SEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS
T ss_pred EEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCC
Confidence 899998877643322210 00 0011111 12222
Q ss_pred ---CEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCC
Q 011256 376 ---YYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 376 ---~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
.+|+.+....|+..++..............-..+..++|++.+..|+.+... -+|+.+.........+.. . .
T Consensus 315 ~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~--~--~ 390 (619)
T 3s94_A 315 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT--A--Q 390 (619)
T ss_dssp SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--S--S
T ss_pred CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE--C--C
Confidence 1344444444666677654322111111113457789999977777777654 555555432222222221 1 1
Q ss_pred CcceEEEEEcCCCCeEEEE-eCCCcEEEecCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVG-SMDRNLRVFGLPGN 484 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~ 484 (490)
...+..+++...+..|+.+ +..+.|.+.++++.
T Consensus 391 ~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 3456788888755544444 45677888887654
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.19 E-value=0.008 Score=60.98 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=115.8
Q ss_pred CCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCcE-EEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCcc
Q 011256 188 PGIVSLDIHYSKDVIATGG-VDTNAVLFDRPSGQI-VTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
.....++|++.++.|+.+. ..+.|..+++..... ...+.........+++.+.+. ++++-...+.|.+.+++...
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-- 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-- 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--
Confidence 3567999999766665554 467888888865432 233333335688999988555 55555567899999987632
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE-EEEcC
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL-GTGTS 341 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~ 341 (490)
....+...-.....|++.|.+.+|+.... .+.|...++............ -.....+++++++..| ++-..
T Consensus 118 -~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-----~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 118 -RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE-----IYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp -CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-----CSSEEEEEEETTTTEEEEEETT
T ss_pred -EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC-----CCCCcEEEEEccCCEEEEEeCC
Confidence 11222233445778999998776666653 467777777644332222211 1457899999865544 44455
Q ss_pred CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCc
Q 011256 342 EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLK 395 (490)
Q Consensus 342 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~ 395 (490)
.+.|..+|+..........+.......|++.++ .|+.+.. .+ |...|..+++
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 678999998654332222212223356777655 4444443 33 8888876654
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.0019 Score=62.84 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=97.0
Q ss_pred CeEEEEecCC-C-CEEEEEeCCCcEEEEeCCCCcEEEEeccC---ccCEEEEEE-------eeCCCEEEEEeCCC-----
Q 011256 189 GIVSLDIHYS-K-DVIATGGVDTNAVLFDRPSGQIVTTLSGH---SKKVTSVKF-------VTEGDLFLTGSADK----- 251 (490)
Q Consensus 189 ~I~~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~l~s~s~dg----- 251 (490)
.-..|+|+|. + +++++....+.|++.|+..+.+...+... ......++| +++|+.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4578999983 4 45555554567999999877665544432 235899999 99999666665543
Q ss_pred --cEEEEeCCCCCccce---eeeecccccceEEEEEecCC-CEEEEEECCCeEEEEeCC-------CCeE----------
Q 011256 252 --TVRVWQGSEDGNYDC---KHTLKDHTAEVQAVTVHATN-KYFVTASLDNTWCFYDLS-------SGIC---------- 308 (490)
Q Consensus 252 --~i~iwd~~~~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~-------~~~~---------- 308 (490)
.|.+++....+.+.. ...+.. ......++++|++ .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665444222220 012221 1234577889955 455555677889999987 5543
Q ss_pred -EEEeecCCCCCCCCCceEEEEcCCCcE-EEEEcCCCcEEEEECC
Q 011256 309 -LTQVSDAGTDGRPEGYTSAAFHPDGLI-LGTGTSEALVKIWDVK 351 (490)
Q Consensus 309 -~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg~i~iwd~~ 351 (490)
...+... +.......++|+|+|+. +++-+....|+.+|..
T Consensus 299 ~~~~l~~~---~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTI---ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEEC---SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEec---CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1121111 11244579999999995 4444566788886653
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.16 E-value=0.00057 Score=64.27 Aligned_cols=224 Identities=10% Similarity=0.032 Sum_probs=120.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE--EEEec---cCccCEEEEEEeeC---CCEEEEEeC-C-----CcEE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTLS---GHSKKVTSVKFVTE---GDLFLTGSA-D-----KTVR 254 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~---~~~l~s~s~-d-----g~i~ 254 (490)
.-..++|.|+|+++++ ..+|.|.+++ ++.. +..+. ........|+|+|+ +..|+.+.. + +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4579999999986655 5669999998 3432 22221 22356889999998 444444433 2 5677
Q ss_pred EEeCCCCC--cccee-eeec---ccccceEEEEEecCCCEEEEEECC-------------CeEEEEeCCCCe--------
Q 011256 255 VWQGSEDG--NYDCK-HTLK---DHTAEVQAVTVHATNKYFVTASLD-------------NTWCFYDLSSGI-------- 307 (490)
Q Consensus 255 iwd~~~~~--~~~~~-~~~~---~h~~~v~~l~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~-------- 307 (490)
.|+..... ..+.+ ..+. ........|+|.|+|.++++.+.. |.|.-++....-
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~ 188 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG 188 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence 78776421 01111 1122 111123689999999766664321 456656554210
Q ss_pred ----EEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCc--------EEEEECCCCc------------------ee
Q 011256 308 ----CLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEAL--------VKIWDVKSQA------------------NV 356 (490)
Q Consensus 308 ----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~--------i~iwd~~~~~------------------~~ 356 (490)
....+.. ++ .....++|+| ++.++++-..... |.+. ..+. ++
T Consensus 189 ~~~~~~~i~a~----G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 189 RRGARPEVYSL----GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTSCTTEEEE----CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCccEEEE----cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCe
Confidence 0000000 01 2346788999 6666555433222 3332 2221 22
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcc------eeeeecCCCCCCeeEEEEcCCCCEEEEEec
Q 011256 357 AKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKN------FRSFESSDSETPTNSVDFDHSGSYLAVASA 426 (490)
Q Consensus 357 ~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~ 426 (490)
..+. +......++| .+|.++++....+ |...++..... ...+.. ....+..+++.|+|.+.++...
T Consensus 262 ~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 262 YFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred EecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence 2222 2234567887 4566655554444 77777654331 122211 1356899999999987766543
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.15 E-value=0.0051 Score=64.06 Aligned_cols=219 Identities=7% Similarity=-0.029 Sum_probs=130.8
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCcc-ceeeeecccccceEEEEEecC
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNY-DCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~~~~ 285 (490)
...|+..++........+. ....+..|+|.+.+. ++++-...+.|+.+++...... .....+.........|++.+.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 4568888887665544444 345678999988554 4555556678888888653110 112222223445678999987
Q ss_pred CCEEEEE-ECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CC-CcEEEEECCCCceeeeecCC
Q 011256 286 NKYFVTA-SLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SE-ALVKIWDVKSQANVAKFDGH 362 (490)
Q Consensus 286 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~d-g~i~iwd~~~~~~~~~~~~~ 362 (490)
+..|+.+ ...+.|.+.++........+... . .....|+++|.+..|+... .. +.|...++........+...
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~-l----~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFREN-G----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECT-T----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCC-C----CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence 7655554 45789999999865543333211 1 4578999999755555443 33 67999998654443333334
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEe
Q 011256 363 VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVA 434 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~ 434 (490)
....+.|++++.+..|+.+... . |..+|+........+...........|++. +..|+.+... -+|+.++
T Consensus 557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 4578999999877777766655 3 999998654433333322112334566653 4466666555 5555553
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.15 E-value=0.0031 Score=58.59 Aligned_cols=231 Identities=7% Similarity=0.046 Sum_probs=127.6
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEec---cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLS---GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY 264 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 264 (490)
..+.+|.|++ +..++ ++..|.|+. ....|+.-..+. .+...+..+.+.+++..++++ .+|.|.. ..+.+..+
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence 4688999986 44444 455665544 233344333322 233457888887777766655 4565432 22233334
Q ss_pred ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCc
Q 011256 265 DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEAL 344 (490)
Q Consensus 265 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 344 (490)
..+. ..+...+..+.+.+++.+++.+...+.++-+|- .+.....+.. .....+..+.+.+++.+++++ .+|.
T Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~-~~G~ 226 (327)
T 2xbg_A 155 QALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIV-NGGK 226 (327)
T ss_dssp EEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC----CSSSCEEEEEECTTSCEEEEE-TTTE
T ss_pred EEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC----CCCCccceeEECCCCCEEEEe-CCce
Confidence 3332 244567899999998887766644333333442 1222222211 123567889999998776554 5687
Q ss_pred EEEEECCCCceeeeecC----CCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecC-CCCCCeeEEEEcCCCC
Q 011256 345 VKIWDVKSQANVAKFDG----HVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS-DSETPTNSVDFDHSGS 419 (490)
Q Consensus 345 i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~s~~~~ 419 (490)
+++.+...++.-..+.. ....+.++.+.+++.+++++..++| ++....++.-..+... .....+.++.|.+++.
T Consensus 227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~ 305 (327)
T 2xbg_A 227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ 305 (327)
T ss_dssp EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE
T ss_pred EEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc
Confidence 77764332333222221 2235889999988887777664445 4444444443333321 1134578888875555
Q ss_pred EEEEEecCeEEEEE
Q 011256 420 YLAVASADIRVYQV 433 (490)
Q Consensus 420 ~l~~~~~di~v~~~ 433 (490)
+++++.+..|+..
T Consensus 306 -~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 306 -GFILGQKGILLRY 318 (327)
T ss_dssp -EEEECSTTEEEEE
T ss_pred -eEEEcCCceEEEE
Confidence 4455555566655
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.14 E-value=0.0056 Score=63.73 Aligned_cols=220 Identities=11% Similarity=-0.002 Sum_probs=126.1
Q ss_pred CCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEE-ECCCeEEEEeCCCCe----EEEEeecCCCCCCCCC
Q 011256 249 ADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTA-SLDNTWCFYDLSSGI----CLTQVSDAGTDGRPEG 323 (490)
Q Consensus 249 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~ 323 (490)
....|+..++.... . ..+......+..|+|++.+..|+.+ ...+.|+.+++.... ....+. . ....
T Consensus 402 n~~~Ir~i~l~~~~---~-~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~----~l~~ 472 (791)
T 3m0c_C 402 NRHEVRKMTLDRSE---Y-TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-R----DIQA 472 (791)
T ss_dssp CBSSEEEECTTSCC---C-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-S----SCSC
T ss_pred cccceeEeeccCCc---c-eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-c----CCCC
Confidence 34568888876532 1 2222234567899999866655554 456789989887532 122221 1 1145
Q ss_pred ceEEEEcCCC-cEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeC-C-C-EEEEECCCCcceee
Q 011256 324 YTSAAFHPDG-LILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAH-D-G-VKLWDLRKLKNFRS 399 (490)
Q Consensus 324 v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d-~-i~iwd~~~~~~~~~ 399 (490)
...|++.+.+ +++++-...+.|.+.++........+.........|++.|.+.+|+.+.. . . |...++..... ..
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~ 551 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS 551 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EE
Confidence 6789999866 55666667789999998755443333334456899999997555555543 3 3 88888864433 23
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe-CCCcEE
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLR 477 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~ 477 (490)
+... .......|++++.+..|+.+... -+|+.++........+..... ......+|++.. .+|+.+. ..+.|.
T Consensus 552 lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~--~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 552 LVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp EECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTT--TTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred EEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCC--ccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 3221 13568899999988888888665 444444332222222222111 122345666633 3444443 456666
Q ss_pred EecCCC
Q 011256 478 VFGLPG 483 (490)
Q Consensus 478 iw~~~~ 483 (490)
..+..+
T Consensus 627 ~~dk~t 632 (791)
T 3m0c_C 627 SANRLT 632 (791)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 665433
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.12 E-value=0.0043 Score=58.21 Aligned_cols=229 Identities=13% Similarity=0.207 Sum_probs=118.6
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeec---ccccceEEEEEecC---CCEEEEEEC-C-----Ce
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK---DHTAEVQAVTVHAT---NKYFVTASL-D-----NT 297 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~~~---~~~l~s~~~-d-----g~ 297 (490)
.....++|.|+|++++ +..+|.|.+++ .. ....+..+. ........|+++|+ +..|+++.. . +.
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g--~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR-EG--RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE-TT--EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE-CC--CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 3467899999998555 45679999998 22 222222221 22356889999998 555554433 2 67
Q ss_pred EEEEeCCCCe-----EEEE-eecCCCCCCCCCceEEEEcCCCcEEEEEcC-------------CCcEEEEECCCC-----
Q 011256 298 WCFYDLSSGI-----CLTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ----- 353 (490)
Q Consensus 298 i~iwd~~~~~-----~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~----- 353 (490)
|..|+...+. .+.. +....... .....++|.|||.++++.+. .|.|.-+|....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~--h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGL--HSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCC--CCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCC--cCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888877542 1111 21101111 23468999999977666432 245666665420
Q ss_pred -------ceeeee-cCCCCCeEEEEEcC-CCCEEEEEeCCC-E------EEEECCCCcc------------------eee
Q 011256 354 -------ANVAKF-DGHVGAVTAISFSE-NGYYLATAAHDG-V------KLWDLRKLKN------------------FRS 399 (490)
Q Consensus 354 -------~~~~~~-~~~~~~i~~l~~s~-~~~~l~~~~~d~-i------~iwd~~~~~~------------------~~~ 399 (490)
.....+ .++ .....++|+| +|.++++-.... + .|.-+..+.. ...
T Consensus 185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 000111 122 2357789999 566555543322 2 2333232221 111
Q ss_pred eecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcc--eEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 400 FESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADW--NCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 400 ~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
+ ........++| .+|.++++.... |...+++.....+ .....+.. ....+..+++.|||.+.++..
T Consensus 264 ~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 W---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp C---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred c---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 1 11223566777 456555444333 4444443322211 11122211 145789999999998766653
No 299
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.10 E-value=0.0025 Score=58.52 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=122.1
Q ss_pred CEEEEEeC--CCcEEEEeCCCCcEEEE--eccCccCEEEEEEeeCCCEEEEEeCC----CcEEEEeCCCCCccceeeeec
Q 011256 200 DVIATGGV--DTNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD----KTVRVWQGSEDGNYDCKHTLK 271 (490)
Q Consensus 200 ~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~ 271 (490)
.+++.||. ...+.+||..+++-... +......-.++. -++.+++.|+.+ ..+.+||..+. .+..+..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCC
Confidence 35556654 35788999877654321 111111112222 367777777755 56888888774 333333332
Q ss_pred ccccceEEEEEecCCCEEEEEECC------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC----
Q 011256 272 DHTAEVQAVTVHATNKYFVTASLD------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS---- 341 (490)
Q Consensus 272 ~h~~~v~~l~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---- 341 (490)
........+.+ ++..++.|+.+ ..+.+||..+......-... .......++. -++.+++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~~~~~~--~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML---TQRCSHGMVE--ANGLIYVCGGSLGNN 162 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS---SCCBSCEEEE--ETTEEEEECCEESCT
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc---CCcceeEEEE--ECCEEEEECCCCCCC
Confidence 21122222222 56777777765 46899999988755432211 1111122222 26677777763
Q ss_pred -----CCcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcceeeeecCCCCCC
Q 011256 342 -----EALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSETP 408 (490)
Q Consensus 342 -----dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~~~ 408 (490)
-..+.+||+.+.+-.. .+......-..+.+ ++++++.|+.+ .+.+||+.+.+-...-........
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 3458899998764222 12111112222233 56677766542 389999987643322111111222
Q ss_pred eeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecC
Q 011256 409 TNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 409 i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~ 448 (490)
...+.+ ++.+++.|+.+ -.+|.++.....|..+..+..
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 283 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRA 283 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEEC
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccc
Confidence 233333 66777777743 345555555567877766544
No 300
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.10 E-value=0.0013 Score=60.15 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=122.2
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCcEEEE--eccCccCEEEEEEeeCCCEEEEEeCC-----CcEEEEeCCCCCc-
Q 011256 198 SKDVIATGG-VD-----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSAD-----KTVRVWQGSEDGN- 263 (490)
Q Consensus 198 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~- 263 (490)
++.+++.|+ .+ ..+.+||..+++-... +........++ ..++.+++.|+.+ ..+.+||..+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345666666 32 3688899877653321 11111111222 2367777777755 3688999877431
Q ss_pred -cceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEE
Q 011256 264 -YDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILG 337 (490)
Q Consensus 264 -~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 337 (490)
+..+..+.........+.+ ++..++.|+.+ ..+.+||+.+......-..... .....++.+ ++.+++
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv 164 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA---REGAGLVVA--SGVIYC 164 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC---CBSCEEEEE--TTEEEE
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC---cccceEEEE--CCEEEE
Confidence 3333333222222222222 56777777654 3688999988875544322111 112222222 677888
Q ss_pred EEcCC-----CcEEEEECCCCceeee--ecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcceeeeecCC
Q 011256 338 TGTSE-----ALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSD 404 (490)
Q Consensus 338 ~g~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~ 404 (490)
.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+ .+.+||+.+.+-...-....
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 87754 4688999887643221 2111112223333 56777777643 28999998765432221111
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeee
Q 011256 405 SETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTF 446 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~ 446 (490)
.......+.+ ++.+++.|+.+ -.+|.++.....|..+..+
T Consensus 243 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 243 PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCC
Confidence 1112222222 56677777643 3445555555667666544
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.08 E-value=0.0076 Score=56.53 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=120.9
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeec---ccccceEEEEEecC---CCEEEEEEC----C----
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK---DHTAEVQAVTVHAT---NKYFVTASL----D---- 295 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~l~~~~~---~~~l~s~~~----d---- 295 (490)
.....++|.|+|++++ +..+|.|.+++. .+ . ..+..+. ........|+++|+ +..|+++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEECS-SC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4468899999998555 466699999873 22 2 2222221 22346889999997 555554433 3
Q ss_pred CeEEEEeCCCC-------eEE-EEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-------------CCcEEEEECCCC-
Q 011256 296 NTWCFYDLSSG-------ICL-TQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ- 353 (490)
Q Consensus 296 g~i~iwd~~~~-------~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~- 353 (490)
+.|..|+.... +.+ ..+.. ...| ....+.|.|||.++++.+. .|.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~--~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPG--AYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEEC--CSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCC--CCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 57888887654 111 11221 1112 3467999999987776432 245666665321
Q ss_pred --------ceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCC----EEEEECCCCcc---------------eee-eecCC
Q 011256 354 --------ANVAKFDGHVGAVTAISFSE-NGYYLATAAHDG----VKLWDLRKLKN---------------FRS-FESSD 404 (490)
Q Consensus 354 --------~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~d~----i~iwd~~~~~~---------------~~~-~~~~~ 404 (490)
..+.. .++ .....++|+| +|.++++-.... |.+.. .+.. ... +....
T Consensus 181 p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp CTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 01111 223 2457899999 666655543321 44332 2211 000 11101
Q ss_pred CCCCeeEEEEc-------CCCCEEEEEecCeEEEEEeecCC-cceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 405 SETPTNSVDFD-------HSGSYLAVASADIRVYQVASVKA-DWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 405 ~~~~i~~i~~s-------~~~~~l~~~~~di~v~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.......+.|. .+|.++++....-+|+.+..... .......+... ....+..+++.|||.+.++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence 13456778883 45665555444444444433221 11111222211 145789999999997666654
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.04 E-value=0.0033 Score=57.35 Aligned_cols=163 Identities=12% Similarity=0.172 Sum_probs=108.2
Q ss_pred ccCEEEEEEeeCCCEEEEEe-CCCcEEEEeCCCCCccceeeeecc----c--ccceEEEEE---ecCCCEEEEEE-----
Q 011256 229 SKKVTSVKFVTEGDLFLTGS-ADKTVRVWQGSEDGNYDCKHTLKD----H--TAEVQAVTV---HATNKYFVTAS----- 293 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~----h--~~~v~~l~~---~~~~~~l~s~~----- 293 (490)
...--+++|++....|..++ ..|+|..|+...+. ...+ .+.+ . ...+..|.| .|++.++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 33445789987656566555 78999999987532 1222 3332 1 114679999 68877777544
Q ss_pred --------CCCeEEEEeCC---CCeEEEEeecCCC-CC-------CCCCceEEEEcCCCcEEEEEcCC-CcEEEEECCCC
Q 011256 294 --------LDNTWCFYDLS---SGICLTQVSDAGT-DG-------RPEGYTSAAFHPDGLILGTGTSE-ALVKIWDVKSQ 353 (490)
Q Consensus 294 --------~dg~i~iwd~~---~~~~~~~~~~~~~-~~-------~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~ 353 (490)
.+..|..||+. +++.+........ .+ .......+++.++|+..++++.. +.|..++....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 7776655442100 00 11347899999999999998888 88887776543
Q ss_pred ceeeeec------CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCC
Q 011256 354 ANVAKFD------GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKL 394 (490)
Q Consensus 354 ~~~~~~~------~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~ 394 (490)
.+..+. ......+.|+++|+|+.|++....+ |..+|+...
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 232221 1122467999999999998887776 999999853
No 303
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.03 E-value=0.02 Score=59.78 Aligned_cols=277 Identities=11% Similarity=0.068 Sum_probs=153.3
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCK 267 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 267 (490)
..|.++....+| .|..|+.+| +..||..+.............|.++.. .+|. |..|+.+ -+..|+..+.. .
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~----~ 133 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK----L 133 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC----E
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe----E
Confidence 468888877665 555566655 789998776432211112335777654 3554 5556665 57788876531 1
Q ss_pred eeec-----ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 268 HTLK-----DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 268 ~~~~-----~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
..+. .....|.++....++.+.+ |+.+ -+..++..++.................|.++....++..|.+|+.
T Consensus 134 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 134 TSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 1221 1234688888777776555 4444 577888877654322111100011234788888777766666664
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecC-----CCCCCeeEEEEcCC
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESS-----DSETPTNSVDFDHS 417 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~-----~~~~~i~~i~~s~~ 417 (490)
+-+..+|..+++...........|.++....+|.+.+. +.+|+.++|..+.......... -....|.++..+.+
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 45888998776432211112345888888877766554 4667999998765432211110 11345889988888
Q ss_pred CCEEEEEecCeEEEEEeecCCcceEeee--ecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 418 GSYLAVASADIRVYQVASVKADWNCIKT--FPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 418 ~~~l~~~~~di~v~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
|.+.+.....+.++.. ......... .........|.++.-..+|.+.+ |+.+| +..++..
T Consensus 290 g~lWiGT~~Gl~~~~~---~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 290 HNIWLGTDYGISLSRY---NSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp CCEEEEESSSEEEECC---CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCT
T ss_pred CCEEEEeCCccccccc---CCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeeccc
Confidence 8765544333443321 111221110 01111234688888888877544 45555 5555433
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.00 E-value=0.006 Score=57.26 Aligned_cols=227 Identities=13% Similarity=0.064 Sum_probs=123.1
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-EEEEec---cCccCEEEEEEeeC---CCEEEEEeC----C----CcE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQ-IVTTLS---GHSKKVTSVKFVTE---GDLFLTGSA----D----KTV 253 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~~---~~~l~s~s~----d----g~i 253 (490)
.-..++|.|+|+++++ ..+|.|++++. ++. .+..+. ........|+|+|+ +..|+.+.. + +.|
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4679999999985555 56699999973 454 222221 22356889999997 444444332 3 567
Q ss_pred EEEeCCCCC-c---ccee-eeec-ccccceEEEEEecCCCEEEEEEC-------------CCeEEEEeCCCC--------
Q 011256 254 RVWQGSEDG-N---YDCK-HTLK-DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSG-------- 306 (490)
Q Consensus 254 ~iwd~~~~~-~---~~~~-~~~~-~h~~~v~~l~~~~~~~~l~s~~~-------------dg~i~iwd~~~~-------- 306 (490)
..|+..... . .+.+ ..+. ........|+|.|+|.++++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 777765431 1 1111 1122 11112467999999987776443 245555554421
Q ss_pred -eEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCC---cEEEEECCC--------C--------ceeeeecCCCCC
Q 011256 307 -ICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEA---LVKIWDVKS--------Q--------ANVAKFDGHVGA 365 (490)
Q Consensus 307 -~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg---~i~iwd~~~--------~--------~~~~~~~~~~~~ 365 (490)
..+... ++ .....++|+| ++.++++-.... .|.+..... + .++..+......
T Consensus 188 ~~~i~a~------G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a 260 (354)
T 3a9g_A 188 NSPIWSY------GH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWA 260 (354)
T ss_dssp TCCEEEE------CC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred CCcEEEE------cc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence 011111 11 2356899999 666655533222 233322110 0 122223112346
Q ss_pred eEEEEEc-------CCCCEEEEEeCCC-EEEEECCCCc-ce--eeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 366 VTAISFS-------ENGYYLATAAHDG-VKLWDLRKLK-NF--RSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 366 i~~l~~s-------~~~~~l~~~~~d~-i~iwd~~~~~-~~--~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
...+.|. .+|.++++....+ |...++.... .. ..+.. .....+..+++.|+|.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 7888884 4566666655555 8888887532 21 12211 1135689999999997766654
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.95 E-value=0.0028 Score=58.17 Aligned_cols=227 Identities=10% Similarity=0.135 Sum_probs=117.7
Q ss_pred CEEEEEeC--CCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC----CeEEEEeCCCCeEEEEeecC
Q 011256 242 DLFLTGSA--DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD----NTWCFYDLSSGICLTQVSDA 315 (490)
Q Consensus 242 ~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~ 315 (490)
.+++.|+. ...+.+||..+. .+..+..+......-..+. -++..++.|+.+ ..+.+||+.+..........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 35556664 356888988763 3333322222112222222 256677777755 67889999988765443221
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEcCC------CcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeC----
Q 011256 316 GTDGRPEGYTSAAFHPDGLILGTGTSE------ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAH---- 383 (490)
Q Consensus 316 ~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~---- 383 (490)
........+.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++++++.|+.
T Consensus 90 ---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 90 ---TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNN 162 (306)
T ss_dssp ---SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCT
T ss_pred ---ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCC
Confidence 11122222222 67788887765 468999988764322 12111112222222 6666666652
Q ss_pred ------CCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCCCC
Q 011256 384 ------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSGT 452 (490)
Q Consensus 384 ------d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~~ 452 (490)
+.+.+||+.+..-...-........ .++... ++.+++.|+.+ -.+|.++.....|..+..++.. .
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 238 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--G 238 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--B
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--c
Confidence 2388999987643322111111111 222222 56666666542 2234444444567776554432 2
Q ss_pred cceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCC
Q 011256 453 GKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 484 (490)
Q Consensus 453 ~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~~ 484 (490)
....++.+ ++++++.|+.+ ..+.+||+..+
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22233333 67788888854 45788887654
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.95 E-value=0.038 Score=60.17 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=134.0
Q ss_pred EEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC----------------------------
Q 011256 244 FLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD---------------------------- 295 (490)
Q Consensus 244 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---------------------------- 295 (490)
++..+ ++.++|..++....+ ...++. -...+..++++|..+.++.+..+
T Consensus 709 ~v~~~-~~~LrI~~i~~~~~~-~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 709 LALAN-NSTLTIGTIDEIQKL-HIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEC-SSCEEEEEECCSSSE-EEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred EEEEc-CCceEEEEecccCCe-eEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 44333 466999987654322 233332 33577888899887765544311
Q ss_pred ---------------------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEE---cCC-CcEEEEEc----------
Q 011256 296 ---------------------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAF---HPD-GLILGTGT---------- 340 (490)
Q Consensus 296 ---------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~l~~g~---------- 340 (490)
+.|++.|..+.+.+..+.... ...+.|++. ..+ ..+|++|+
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~----nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~ 861 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ----NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEP 861 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT----TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSC
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC----CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCC
Confidence 235666766666665554321 134455543 222 46888886
Q ss_pred CCCcEEEEECCCCceeeee-cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCC
Q 011256 341 SEALVKIWDVKSQANVAKF-DGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGS 419 (490)
Q Consensus 341 ~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~ 419 (490)
..|.|++|++..++..... ....+++++++-- +| +|++|-...|++|++...+.+. ..... -..+..+.....++
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~-~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNH-YNNIMALYLKTKGD 937 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEE-CCCSCEEEEEEETT
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeec-cccEEEEEEeccCC
Confidence 3588999998754332221 2246789988744 45 5666665669999998765443 21110 11133333334578
Q ss_pred EEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 420 YLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 420 ~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
++++|... +.++.++........+ ........++++.|-.+ ..++.+..+|.|.++..+..
T Consensus 938 ~I~vgD~~~Sv~~~~y~~~~~~L~~~---a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKPMEGNFEEI---ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EEEEEESSBCEEEEEEETTTTEEEEE---EECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTT
T ss_pred EEEEEEhhheEEEEEEEcCCCeEEEE---EeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCC
Confidence 89988776 7777665433222222 22223667889888755 46778999999999988764
No 307
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.90 E-value=0.0048 Score=56.68 Aligned_cols=237 Identities=11% Similarity=0.129 Sum_probs=120.6
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCcEEEE--eccCccCEEEEEEeeCCCEEEEEeC----C-----CcEEEEeCCCC
Q 011256 197 YSKDVIATGGVD----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSA----D-----KTVRVWQGSED 261 (490)
Q Consensus 197 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~----d-----g~i~iwd~~~~ 261 (490)
-++.+++.||.+ ..+.+||..+++-... +......-..+ .-++.+++.|+. + ..+.+||..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC--VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE--EECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777742 3688999877654322 11111111122 226777777765 2 35788888763
Q ss_pred CccceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 262 GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 262 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
.+..+..+.........+.+ ++..++.|+.+ ..+.+||+.+......-... .......++.+ ++.++
T Consensus 101 -~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 101 -QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML---TRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp -EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS---SCCBSCEEEEE--TTEEE
T ss_pred -eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC---ccccceEEEEE--CCEEE
Confidence 23333222221112222222 56677776643 46889999887654432211 11122222233 67777
Q ss_pred EEEcCC-----CcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcceeeeecC
Q 011256 337 GTGTSE-----ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESS 403 (490)
Q Consensus 337 ~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~ 403 (490)
+.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++++++.|+.+ .+.+||+.+.+-...-...
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 877654 458899987764221 11111112223333 66777777643 2899999876533221111
Q ss_pred CCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeec
Q 011256 404 DSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~ 447 (490)
..... .++.. -++.+++.|+.+ -.+|.++.....|..+..++
T Consensus 251 ~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 297 (308)
T 1zgk_A 251 HRRSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT 297 (308)
T ss_dssp SCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred CCccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence 11111 22222 256677777643 33444444556677665543
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.87 E-value=0.0051 Score=56.27 Aligned_cols=232 Identities=15% Similarity=0.222 Sum_probs=116.2
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCcEEEE--eccCccCEEEEEEeeCCCEEEEEeCCC-----cEEEEeCCCCCcccee
Q 011256 199 KDVIATGGVD----TNAVLFDRPSGQIVTT--LSGHSKKVTSVKFVTEGDLFLTGSADK-----TVRVWQGSEDGNYDCK 267 (490)
Q Consensus 199 ~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~ 267 (490)
+.+++.|+.+ ..+.+||..+..-... +......-..+. -++.+++.|+.++ .+.+||..+. .+..+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTT-EEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCC-ceeeC
Confidence 4456666643 4588889877653322 111111111222 2677777777543 5888888763 33333
Q ss_pred eeecccccceEEEEEecCCCEEEEEECCC-----eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC
Q 011256 268 HTLKDHTAEVQAVTVHATNKYFVTASLDN-----TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE 342 (490)
Q Consensus 268 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 342 (490)
..+.........+.+ ++..++.|+.++ .+.+||+.+......-... ..... .+++. -++.+++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~-~~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN---TRRSS-VGVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS---SCCBS-CEEEE-ETTEEEEECCEE
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC---CcccC-ceEEE-ECCEEEEEeCCC
Confidence 333222112222222 577777777653 5788999887755432211 11112 22222 266777777643
Q ss_pred -------CcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcceeeeecCCCCC
Q 011256 343 -------ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSET 407 (490)
Q Consensus 343 -------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~~ 407 (490)
..+.+||+.+.+-.. .+.........+.+ ++.+++.|+.+ .+.+||+.+.+-...-.......
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 243 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence 358899988764322 22211112223333 56777777643 28899998765332211111111
Q ss_pred CeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEee
Q 011256 408 PTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIK 444 (490)
Q Consensus 408 ~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~ 444 (490)
.. .++. .++.+++.|+.+ -.+|.++.....|..+.
T Consensus 244 ~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 244 NA-GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp SC-EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred cC-eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 11 2222 256677777643 22344444445666553
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.87 E-value=7.6e-05 Score=77.07 Aligned_cols=217 Identities=8% Similarity=-0.055 Sum_probs=118.3
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEE-eCCCcEEEEeCCCCCc-cceeeeecccccceEEEEEecC
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTG-SADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHAT 285 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~ 285 (490)
.+.|+..++........+.. ...+..++|.+.+..|+.+ ...+.|..+++..... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 45788888876665544443 3446789999866655554 4567899998875100 0111111111223456788754
Q ss_pred CC-EEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC--CCcEEEEECCCCceeeeecCC
Q 011256 286 NK-YFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS--EALVKIWDVKSQANVAKFDGH 362 (490)
Q Consensus 286 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~ 362 (490)
+. ++++-...+.|.++++........+... ......++++|.+..|+.... .+.|..+++........+...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~-----~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQ-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCS-----SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCC-----CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 44 4444455688999998765443332211 134577899996555554432 267888877533222222222
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC---eEEEE
Q 011256 363 VGAVTAISFSENGYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD---IRVYQ 432 (490)
Q Consensus 363 ~~~i~~l~~s~~~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d---i~v~~ 432 (490)
....+.|+|+|++..|+.+... . |..+|+........+...........++++.+ .|+..... |..++
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEE
Confidence 3456789999986666555544 4 99999864332222221111233455666543 45554443 55554
No 310
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.84 E-value=0.0063 Score=56.72 Aligned_cols=194 Identities=13% Similarity=0.173 Sum_probs=116.3
Q ss_pred CeEEEEecCCCCEEEEEe------------CCCcEEEEeCCC--CcEE-EEecc-----CccCEEEEEEee--CCC-EEE
Q 011256 189 GIVSLDIHYSKDVIATGG------------VDTNAVLFDRPS--GQIV-TTLSG-----HSKKVTSVKFVT--EGD-LFL 245 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~--~~~~-~~~~~-----h~~~v~~l~~~~--~~~-~l~ 245 (490)
+.-.+.+.|+|..+++++ .+|.|.++|..+ ++.. ..+.+ ..-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 445667788765555442 689999999873 2221 12222 223567788766 454 455
Q ss_pred EEe-C--CCcEEEEeCCCCCc-cceeeeeccc-ccceEEEEEecCCCEEEEEE-----------------CCCeEEEEeC
Q 011256 246 TGS-A--DKTVRVWQGSEDGN-YDCKHTLKDH-TAEVQAVTVHATNKYFVTAS-----------------LDNTWCFYDL 303 (490)
Q Consensus 246 s~s-~--dg~i~iwd~~~~~~-~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~-----------------~dg~i~iwd~ 303 (490)
++. . +.+|.+|+++.++. ...+..+.+. -...+.+.+.++|.+.++.. ..|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 443 2 46788888766432 2333344332 24578999999998777654 1245666665
Q ss_pred CCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE-cCCCcEEEEECCC-Cce--eeeecCCCCCeEEEEEcC-CCCEE
Q 011256 304 SSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSEALVKIWDVKS-QAN--VAKFDGHVGAVTAISFSE-NGYYL 378 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~l~~s~-~~~~l 378 (490)
. +........ ...+.++|+||++.|+++ +..+.|..||+.. ++. ...+. ..+....+++.+ +|++.
T Consensus 211 ~--~~~~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 211 N--DVRVVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp T--CCEEEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEE
T ss_pred C--eEEEeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEE
Confidence 3 222111111 346889999999776665 4568899999863 322 22332 345678899999 59888
Q ss_pred EEEeCCC--EEEEEC
Q 011256 379 ATAAHDG--VKLWDL 391 (490)
Q Consensus 379 ~~~~~d~--i~iwd~ 391 (490)
+++.-++ |..||.
T Consensus 282 va~~~~g~~v~~~~P 296 (355)
T 3sre_A 282 VGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEESCHHHHHSCCT
T ss_pred EEecCCceEEEEECC
Confidence 8776564 444443
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.82 E-value=0.0035 Score=57.34 Aligned_cols=229 Identities=10% Similarity=0.120 Sum_probs=115.5
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCe-
Q 011256 240 EGDLFLTGS-AD-----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGI- 307 (490)
Q Consensus 240 ~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~- 307 (490)
++.+++.|+ .+ ..+.+||..+. .+..+..+.........+ ..++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344556665 22 36788888763 233322222211111222 2256777777755 468999998876
Q ss_pred --EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC-----CcEEEEECCCCcee--eeecCCCCCeEEEEEcCCCCEE
Q 011256 308 --CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYL 378 (490)
Q Consensus 308 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l 378 (490)
........ .......++.+ ++.+++.|+.+ ..+.+||+.+.+-. ..+......-..+.+ +++++
T Consensus 91 ~~W~~~~~~p---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 163 (301)
T 2vpj_A 91 GVWYSVAPMN---VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIY 163 (301)
T ss_dssp CCCEEECCCS---SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEE
T ss_pred CeeEECCCCC---CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEE
Confidence 33322111 11122222222 67778887654 36889998876422 222211112222333 66777
Q ss_pred EEEeCC------CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeec
Q 011256 379 ATAAHD------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFP 447 (490)
Q Consensus 379 ~~~~~d------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~ 447 (490)
+.|+.+ .+.+||+.+.+-...-...........+.+ ++.+++.|+.+ -.+|.++.....|..+....
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 776543 288999887654322111111111222222 56677777643 23344444445677665443
Q ss_pred CCCCCcceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCC
Q 011256 448 DLSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 484 (490)
Q Consensus 448 ~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~~ 484 (490)
.. ......+.+ ++++++.|+.+ ..|.+||+..+
T Consensus 242 ~~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 32 112223333 67777888765 35778887654
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.77 E-value=0.027 Score=52.80 Aligned_cols=150 Identities=8% Similarity=0.040 Sum_probs=80.6
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee----cccccceEEEEEecC---CCEEEEEE-C-------
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFVTAS-L------- 294 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~~~---~~~l~s~~-~------- 294 (490)
.....|+|.|+|+.|+++...|.|++++.... ....+..+ .........|+++|+ +..|..+. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34688999999983444566799999985321 10111111 122346789999996 45444442 2
Q ss_pred CCeEEEEeCCCC--e--EEEEe-ecCCC-CCCCCCceEEEEcCCCcEEEEEcC-------------CCcEEEEECCCCc-
Q 011256 295 DNTWCFYDLSSG--I--CLTQV-SDAGT-DGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQA- 354 (490)
Q Consensus 295 dg~i~iwd~~~~--~--~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~~- 354 (490)
...|..|++... . ....+ ..... .........+.|.|||.++++.+. .|.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766543 1 11111 11110 011122357999999976666433 2467777764320
Q ss_pred -----------eeeee-cCCCCCeEEEEEcC-CCCEEEEE
Q 011256 355 -----------NVAKF-DGHVGAVTAISFSE-NGYYLATA 381 (490)
Q Consensus 355 -----------~~~~~-~~~~~~i~~l~~s~-~~~~l~~~ 381 (490)
....+ .++ .....++|+| +|.++++-
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence 11111 223 3468899999 56655543
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.74 E-value=0.00022 Score=73.67 Aligned_cols=219 Identities=12% Similarity=0.026 Sum_probs=117.3
Q ss_pred CCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCC----CeEEEEeecCCCCCCCCCc
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSS----GICLTQVSDAGTDGRPEGY 324 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~v 324 (490)
.+.|++.++... .....+. ....+..|+|++.+..|+.+. ..+.|..+++.. ......+. . .....
T Consensus 385 ~~~I~~id~~~~---~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~----~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDRS---EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-R----DIQAP 455 (699)
T ss_dssp TTC-CEECTTSC---CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-S----CC--C
T ss_pred ccceEEEeCCCC---cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-C----CCCCc
Confidence 457777877663 2222222 234567899998777766664 457899999875 11111111 0 01234
Q ss_pred eEEEEcC-CCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe-CC-C-EEEEECCCCcceeee
Q 011256 325 TSAAFHP-DGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-HD-G-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 325 ~~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~d-~-i~iwd~~~~~~~~~~ 400 (490)
..+++.+ .+.++++-...+.|.++++........+.........|+++|.+.+|+.+. .. + |.++++..... ..+
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEE
Confidence 5688885 455555555678899999875543333332334567889998655444443 22 3 77777653322 222
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEe
Q 011256 401 ESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 479 (490)
... .......|+|+|++..|+++... -+|+.++........+..... .......+++..+ .++++....+.|..+
T Consensus 535 ~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 535 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--RLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS--SCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred EeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC--cCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 111 13456789999987777777655 344443322222222221111 1223345555443 334444456778877
Q ss_pred cCC
Q 011256 480 GLP 482 (490)
Q Consensus 480 ~~~ 482 (490)
+..
T Consensus 611 d~~ 613 (699)
T 1n7d_A 611 NRL 613 (699)
T ss_dssp ETT
T ss_pred Ecc
Confidence 754
No 314
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.74 E-value=0.05 Score=55.20 Aligned_cols=197 Identities=7% Similarity=-0.051 Sum_probs=123.2
Q ss_pred CCeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccc
Q 011256 188 PGIVSLDIHYSKDVIA-TGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYD 265 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 265 (490)
.....++|++.+..|+ +-..++.|..+++........+.........+++.+.+. ++++-...+.|.+.+++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence 3578999999766554 445678899998875544444443334567888876555 45555567889999987642
Q ss_pred eeeeecccccceEEEEEecCCCEEEEEEC--CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEE-cCC
Q 011256 266 CKHTLKDHTAEVQAVTVHATNKYFVTASL--DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTG-TSE 342 (490)
Q Consensus 266 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~d 342 (490)
....+...-.....|++.|...+|+.... .+.|...++........... -.....+++++++..|+.+ ...
T Consensus 114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~------~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN------VGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS------CSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC------CCCcceEEEccccCEEEEEECCC
Confidence 11112233346789999997766666653 56888888875543332321 1567899999976555554 556
Q ss_pred CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc
Q 011256 343 ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK 395 (490)
Q Consensus 343 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~ 395 (490)
+.|..+|+..... ..+.........+++.. +.++++-...+ |...|..+++
T Consensus 188 ~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 7899999865433 23333334456788764 44444443344 8888865554
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.74 E-value=0.007 Score=55.31 Aligned_cols=228 Identities=14% Similarity=0.161 Sum_probs=114.5
Q ss_pred CCEEEEEeCC----CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECC-----CeEEEEeCCCCeEEEE
Q 011256 241 GDLFLTGSAD----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLD-----NTWCFYDLSSGICLTQ 311 (490)
Q Consensus 241 ~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 311 (490)
+.+++.|+.+ ..+.+||..+. .+..+..+......-. ++.. ++..++.|+.+ ..+.+||..+......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRAG-MVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCE-EEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccce-EEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555543 35778887763 2333322221111111 2222 56677777754 3588999988875543
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCCC-----cEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeC-
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA-----LVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAH- 383 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~- 383 (490)
-... .......++.+ ++.+++.|+.++ .+.+||+.+.+-.. .+.........+.+ ++++++.|+.
T Consensus 93 ~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 165 (302)
T 2xn4_A 93 ANMR---DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYD 165 (302)
T ss_dssp CCCS---SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCCC---ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCC
Confidence 3211 11112222222 677777777553 57889987764322 12111112222223 5666666643
Q ss_pred -------CCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCCC
Q 011256 384 -------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLSG 451 (490)
Q Consensus 384 -------d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~~ 451 (490)
+.+.+||+.+.+-...-...........+.+ ++.+++.|+.+ -.+|.++.....|..+......
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 2288999887653322111111112222222 56677777643 2344444445667776654332
Q ss_pred CcceEEEEEcCCCCeEEEEeCCC-----cEEEecCCCC
Q 011256 452 TGKATCVKFGPDAKYIAVGSMDR-----NLRVFGLPGN 484 (490)
Q Consensus 452 ~~~v~~~~~s~~~~~l~s~~~dg-----~v~iw~~~~~ 484 (490)
......+.+ ++++++.|+.++ .|.+||+..+
T Consensus 242 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 111222222 677778887654 4888887654
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.64 E-value=0.018 Score=53.90 Aligned_cols=237 Identities=11% Similarity=0.021 Sum_probs=124.1
Q ss_pred CeEEEEecCCCC-EEEEEeCCCcEEEEeCCCCcEEEEe-------ccCccCEEEEEEeeC---CCEEEEE-eC-------
Q 011256 189 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSGQIVTTL-------SGHSKKVTSVKFVTE---GDLFLTG-SA------- 249 (490)
Q Consensus 189 ~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~---~~~l~s~-s~------- 249 (490)
.-..|+|.|+|+ +++ +...|.|++++.. +.....+ .........++|+|+ +..|+.+ +.
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457999999999 555 4567999999853 3321111 112345789999995 4444433 22
Q ss_pred CCcEEEEeCCCCC-cc---cee-eeecc---cccceEEEEEecCCCEEEEEECC-------------CeEEEEeCCCCe-
Q 011256 250 DKTVRVWQGSEDG-NY---DCK-HTLKD---HTAEVQAVTVHATNKYFVTASLD-------------NTWCFYDLSSGI- 307 (490)
Q Consensus 250 dg~i~iwd~~~~~-~~---~~~-~~~~~---h~~~v~~l~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~- 307 (490)
...|..|++.... .. +.+ ..+.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356666664321 11 111 11110 11123579999999665554432 456666654320
Q ss_pred -----------EEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcC-CCcEEEEECCCCc--------------------
Q 011256 308 -----------CLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTS-EALVKIWDVKSQA-------------------- 354 (490)
Q Consensus 308 -----------~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~-dg~i~iwd~~~~~-------------------- 354 (490)
....+.. ++ .....++|+| +|.++++-.. ++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~----G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSY----GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp TTCTTTTSTTSCTTEEEE----CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCcCCCCCCccEEEE----cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 0000100 11 3367899999 5655554221 1111222111111
Q ss_pred -----------eeeeecCCCCCeEEEEEcC-------CCCEEEEEeCCC-EEEEECCCCcceeeeecC-CCCCCeeEEEE
Q 011256 355 -----------NVAKFDGHVGAVTAISFSE-------NGYYLATAAHDG-VKLWDLRKLKNFRSFESS-DSETPTNSVDF 414 (490)
Q Consensus 355 -----------~~~~~~~~~~~i~~l~~s~-------~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~-~~~~~i~~i~~ 414 (490)
++..+. +...+..+.|.. +|.++++....+ |...++...+........ .....+..+++
T Consensus 252 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp CCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred ccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 111122 223567788864 466666555555 777777654333221111 11347899999
Q ss_pred cCCCCEEEEEe-cCeEEEEE
Q 011256 415 DHSGSYLAVAS-ADIRVYQV 433 (490)
Q Consensus 415 s~~~~~l~~~~-~di~v~~~ 433 (490)
.|+|.+.++.. .+.+||.+
T Consensus 331 ~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 331 GPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp CTTSCEEEEECSTTEEEEEE
T ss_pred CCCCcEEEEEeCCCCEEEEE
Confidence 99999766544 34888876
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.64 E-value=0.013 Score=53.83 Aligned_cols=225 Identities=13% Similarity=0.132 Sum_probs=114.8
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEEC----C-------CeEEEEeCCCCeEEEE
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----D-------NTWCFYDLSSGICLTQ 311 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~ 311 (490)
+++.|+ ..+.+||..+. .+.. ..+..............++..++.|+. + ..+.+||..+......
T Consensus 7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 56889998874 2332 222222122233333457788888873 1 1277899988775432
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCC--------CcEEEEECCCCcee--eeecCCCCCeEEEEEcCCCCEEEEE
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE--------ALVKIWDVKSQANV--AKFDGHVGAVTAISFSENGYYLATA 381 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~l~~~ 381 (490)
-... ..... .+++.. ++.+++.|+.+ ..+.+||+.+.+-. ..+.........+. -++++++.|
T Consensus 83 ~~~p---~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G 155 (315)
T 4asc_A 83 PPLP---SPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIG 155 (315)
T ss_dssp CCBS---SCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred CCCC---cchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEe
Confidence 2111 00111 122222 66777777732 35889999876422 12211111222222 356677777
Q ss_pred eC-C------CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCC
Q 011256 382 AH-D------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDL 449 (490)
Q Consensus 382 ~~-d------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~ 449 (490)
+. + .+.+||+.+.+-...-...........+.+ ++.+++.|+.+ -.+|.++.....|..+...+..
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 233 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE 233 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc
Confidence 65 1 288999887643222111111111222222 56777777653 2455555556678777654332
Q ss_pred CCCcceEEEEEcCCCCeEEEEeCCC--------------cEEEecCCCC
Q 011256 450 SGTGKATCVKFGPDAKYIAVGSMDR--------------NLRVFGLPGN 484 (490)
Q Consensus 450 ~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~iw~~~~~ 484 (490)
......+.+ ++++++.|+.++ .|.+||+..+
T Consensus 234 --r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 234 --RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp --CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred --ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 222223333 667777777642 3667777654
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.62 E-value=0.12 Score=56.20 Aligned_cols=280 Identities=13% Similarity=0.138 Sum_probs=152.2
Q ss_pred CCCeEEEEecCC------CCEEEEEeC-CCcEEEEeCCCCcEEEEecc-CccCEEEEEEee--CCCEEEEEeCCCcEEEE
Q 011256 187 KPGIVSLDIHYS------KDVIATGGV-DTNAVLFDRPSGQIVTTLSG-HSKKVTSVKFVT--EGDLFLTGSADKTVRVW 256 (490)
Q Consensus 187 ~~~I~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~--~~~~l~s~s~dg~i~iw 256 (490)
...|.|+++.|. ++++++|.. |++|+|+++.+.+.+....- ......++.+.. ...+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 369999997 99999999987766543321 123445555433 23478899999998766
Q ss_pred eCCCC-CccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCce-EEEEcCC--
Q 011256 257 QGSED-GNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYT-SAAFHPD-- 332 (490)
Q Consensus 257 d~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~-- 332 (490)
.++.. +.....++..--..++.-..+...+..-+.+..+....++.-+..-....+. . ..+. ...|+..
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~---~----~~v~~~~~F~se~~ 705 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN---L----KEVNYMCPLNSDGY 705 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS---S----SCCCEEEEECCSSS
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC---h----HHhceEeccCcccC
Confidence 65431 1112221112123456555555445444444445555555544322222221 1 2232 3345432
Q ss_pred CcEEEEEcCCCcEEEEECCCCc--eeeeecCCCCCeEEEEEcCCCCEEEEEeC---------------------------
Q 011256 333 GLILGTGTSEALVKIWDVKSQA--NVAKFDGHVGAVTAISFSENGYYLATAAH--------------------------- 383 (490)
Q Consensus 333 ~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--------------------------- 383 (490)
..-++..+ ++.++|..+.... .+.++. -...+..++++|+.+.++++..
T Consensus 706 ~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 706 PDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp TTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 12333333 4558888775432 222232 2346777888876554443321
Q ss_pred ---------------------C-C-EEEEECCCCcceeeeecCCCCCCeeEEE---EcC-CCCEEEEEec------C---
Q 011256 384 ---------------------D-G-VKLWDLRKLKNFRSFESSDSETPTNSVD---FDH-SGSYLAVASA------D--- 427 (490)
Q Consensus 384 ---------------------d-~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~---~s~-~~~~l~~~~~------d--- 427 (490)
. + |+++|-.+.+.+..+..... ..+.+++ |.. ...++++|+. +
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 0 1 67777777766666655432 2344444 332 2578888862 1
Q ss_pred ---eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCCC
Q 011256 428 ---IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 428 ---i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 484 (490)
+.+|++. ......+.... ..+.|++++-- +|+ |++|- ..+|++|++...
T Consensus 863 ~Gri~vf~v~--~~kL~lv~~~~---v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~ 914 (1158)
T 3ei3_A 863 QGRIVVFQYS--DGKLQTVAEKE---VKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTE 914 (1158)
T ss_dssp CEEEEEEEEE--TTEEEEEEEEE---ESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTT
T ss_pred ceEEEEEEEE--CCEEEEEEEEE---cCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCC
Confidence 6667764 22333333322 26678887643 454 44443 578999998754
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.60 E-value=0.014 Score=53.58 Aligned_cols=229 Identities=10% Similarity=0.071 Sum_probs=112.7
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEEC----C-----CeEEEEeCCCC
Q 011256 240 EGDLFLTGSAD----KTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----D-----NTWCFYDLSSG 306 (490)
Q Consensus 240 ~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----d-----g~i~iwd~~~~ 306 (490)
++.+++.|+.+ ..+.+||..+. .+..+..+......- +++.. ++..++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 44455555421 35777777653 222222222111111 12222 5666677665 2 46889999887
Q ss_pred eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC-----CcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEE
Q 011256 307 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-----ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLA 379 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~ 379 (490)
......... .......++.+ ++.+++.|+.+ ..+.+||+.+.+-.. .+......-..+.+ ++.+++
T Consensus 101 ~W~~~~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 101 QWSPCAPMS---VPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp EEEECCCCS---SCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred eEeECCCCC---cCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 654432211 11122222222 67778877643 368899988764322 12111112223333 667777
Q ss_pred EEeCC------CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecC
Q 011256 380 TAAHD------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 380 ~~~~d------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~ 448 (490)
.|+.+ .+.+||+.+.+-...-...........+.+ ++.+++.|+.+ -.+|.++.....|..+..++.
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred EeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 76643 288999887643322111111122222222 56667776542 234444444566776654433
Q ss_pred CCCCcceEEEEEcCCCCeEEEEeCC-----CcEEEecCCCC
Q 011256 449 LSGTGKATCVKFGPDAKYIAVGSMD-----RNLRVFGLPGN 484 (490)
Q Consensus 449 ~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~~ 484 (490)
. ......+.+ ++++++.|+.+ ..|.+||+..+
T Consensus 252 ~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 252 R--RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C--CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred C--ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 112222233 67777788754 35778887654
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.55 E-value=0.11 Score=54.14 Aligned_cols=286 Identities=10% Similarity=0.051 Sum_probs=152.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.|.++....++..|..|+. +-+..+|..+++...........|.++....+|.+. .|+.+ -+.+++..+.. .....
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~-~~~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTP-LQHII 267 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSC-CEEEC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCc-EEEEE
Confidence 4888888877775555554 458888987665432211123458888777677644 45554 47788876531 11111
Q ss_pred ee-----cccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC
Q 011256 269 TL-----KDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA 343 (490)
Q Consensus 269 ~~-----~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 343 (490)
.. .-....|.++....+|.+ ..|+..| +.++......................|.++....+|.+-+ |+.+|
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G 344 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG 344 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc
Confidence 00 012345888887766664 4455556 5544432211111111000111124688888888877554 44555
Q ss_pred cEEEEECCCCc--eeeeec-------CCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCCCcceeeee-cCC---CCCCee
Q 011256 344 LVKIWDVKSQA--NVAKFD-------GHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFE-SSD---SETPTN 410 (490)
Q Consensus 344 ~i~iwd~~~~~--~~~~~~-------~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~-~~~---~~~~i~ 410 (490)
+..++..++. ....+. .....|.++.-..+|.+-+ |+.+||..||..+.+...... ... ....|.
T Consensus 345 -l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 422 (758)
T 3ott_A 345 -LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTY 422 (758)
T ss_dssp -EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETTEEEEEETTTTEEEEEEEECCC--CBSSSEE
T ss_pred -ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEE
Confidence 6667665432 111121 0123588888887776544 445679999988765432211 110 124578
Q ss_pred EEEEcCCCCEEEEEecC-eEEEEEeec--CCcceEe--eeec--CCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 411 SVDFDHSGSYLAVASAD-IRVYQVASV--KADWNCI--KTFP--DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 411 ~i~~s~~~~~l~~~~~d-i~v~~~~~~--~~~~~~~--~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
++..+.+|.+.+..... +.+++.... ....... ..+. .......|.++...++|.+.+.++..+.|..|+...
T Consensus 423 ~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 423 YIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp EEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred EEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 88888877755543333 777764210 0000111 1111 101134589999999988765444445577777654
No 321
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.52 E-value=0.1 Score=52.93 Aligned_cols=225 Identities=8% Similarity=-0.036 Sum_probs=132.6
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEE-CCCeEEEEeCCCCeEEEEeecCCCCCCC
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS-LDNTWCFYDLSSGICLTQVSDAGTDGRP 321 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 321 (490)
+|+.+ ..+.|+..++.... ......+. .-..+..|+|++.+..++.+. .++.|..+++........+... .
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~-~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~---- 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNN-NNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-L---- 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTT-CEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-C----
T ss_pred EEEEE-eCCcEEEEECCCCC-cceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-C----
Confidence 34433 44678999987642 11111222 234688999999777666554 5688999998765433333211 1
Q ss_pred CCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEe-C-CC-EEEEECCCCcce
Q 011256 322 EGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAA-H-DG-VKLWDLRKLKNF 397 (490)
Q Consensus 322 ~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~-d~-i~iwd~~~~~~~ 397 (490)
.....+++.+. ++++++-...+.|.+.++........+...-.....|++.|...+|+.+. . .. |...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 34678899875 45556666678899999865433222323345678999998644555444 2 23 777877654433
Q ss_pred eeeecCCCCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcE
Q 011256 398 RSFESSDSETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNL 476 (490)
Q Consensus 398 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 476 (490)
..+. .......+++++++..|+.+... -+|+.++........+.. . .....++++.. +...++-...+.|
T Consensus 160 ~l~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~--~---l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 160 TLVP---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD--D---LPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp EEEC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE--C---CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred EEEC---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec--c---CCCceEEEEEC-CEEEEecCCCCEE
Confidence 2222 24567899999998888888766 344444322222222221 1 23456777754 3333444446778
Q ss_pred EEecCCCC
Q 011256 477 RVFGLPGN 484 (490)
Q Consensus 477 ~iw~~~~~ 484 (490)
...+..++
T Consensus 231 ~~~dk~tg 238 (628)
T 4a0p_A 231 ERANKTSG 238 (628)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 87775444
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.44 E-value=0.068 Score=48.95 Aligned_cols=229 Identities=13% Similarity=0.125 Sum_probs=114.6
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE-EeccCccCEEEEEEeeCCCEEEEEeC----C-------CcEEEEeCCCCCccceee
Q 011256 201 VIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA----D-------KTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~----d-------g~i~iwd~~~~~~~~~~~ 268 (490)
+++.|+ ..+.+||..+++-.. .+..............++.+++.|+. + ..+.+||..+. .+..+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEECC
Confidence 445555 579999998876432 22211122223333447777788873 1 12677887763 233322
Q ss_pred eecccccceEEEEEecCCCEEEEEECC--------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLD--------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
.+........ ++.. ++..++.|+.+ ..+.+||..+......-... ..... .+++. .++.+++.|+
T Consensus 84 ~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~r~~-~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 84 PLPSPRCLFG-LGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP---YVVYG-HTVLS-HMDLVYVIGG 156 (315)
T ss_dssp CBSSCEESCE-EEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS---SCCBS-CEEEE-ETTEEEEECC
T ss_pred CCCcchhcee-EEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC---Ccccc-eeEEE-ECCEEEEEeC
Confidence 2221111111 2222 56666777632 45889999888654332211 11111 22222 4667777777
Q ss_pred C-C-----CcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcceeeeecCCCC
Q 011256 341 S-E-----ALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKNFRSFESSDSE 406 (490)
Q Consensus 341 ~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~~~~~~~~~~~ 406 (490)
. + ..+.+||+.+.+-.. .+........++.+ ++++++.|+.+ .+.+||+.+.+-...-......
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 234 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER 234 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence 5 2 468999988764221 12111112223333 66777777653 1788998876433222111111
Q ss_pred CCeeEEEEcCCCCEEEEEecC--------------eEEEEEeecCCcceEe
Q 011256 407 TPTNSVDFDHSGSYLAVASAD--------------IRVYQVASVKADWNCI 443 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~d--------------i~v~~~~~~~~~~~~~ 443 (490)
.....+.+ ++.+++.|+.+ -.+|.++.....|..+
T Consensus 235 ~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 235 SSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp BSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred cceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 22222222 56667776642 2345555555667666
No 323
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.43 E-value=0.063 Score=49.28 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=110.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEEC----CC-------eEEEEeCCCCeEEEE
Q 011256 243 LFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL----DN-------TWCFYDLSSGICLTQ 311 (490)
Q Consensus 243 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~ 311 (490)
+++.|+. .+.+||..+.. +.. ..+..............++..++.|+. ++ .+.+||..+......
T Consensus 18 i~~~GG~--~~~~yd~~~~~-W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENE-CYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTE-EEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCc-eec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 37888887742 222 122111112222233446778888873 12 277889888776443
Q ss_pred eecCCCCCCCCCceEEEEcCCCcEEEEEcCC-------CcEEEEECCCCceeee--ecCCCCCeEEEEEcCCCCEEEEEe
Q 011256 312 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSE-------ALVKIWDVKSQANVAK--FDGHVGAVTAISFSENGYYLATAA 382 (490)
Q Consensus 312 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~ 382 (490)
-.... .... .+++.. ++.+++.|+.+ ..+.+||+.+.+-... +......-..+. .++++++.|+
T Consensus 94 ~~~p~---~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 166 (318)
T 2woz_A 94 PPLPS---ARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGG 166 (318)
T ss_dssp SCBSS---CBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECC
T ss_pred CCCCc---cccc-cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcC
Confidence 22111 1111 222222 66777777753 2578899887643221 111111112222 3666766665
Q ss_pred C-------CCEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC-----eEEEEEeecCCcceEeeeecCCC
Q 011256 383 H-------DGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD-----IRVYQVASVKADWNCIKTFPDLS 450 (490)
Q Consensus 383 ~-------d~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d-----i~v~~~~~~~~~~~~~~~~~~~~ 450 (490)
. +.+.+||+.+.+-...-........ .+++. -++.+++.|+.+ -.+|.++.....|..+...+..
T Consensus 167 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 243 (318)
T 2woz_A 167 KTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE- 243 (318)
T ss_dssp EESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-
T ss_pred CCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 3 1289999987653322111111111 22222 256677777643 3344444555667776654432
Q ss_pred CCcceEEEEEcCCCCeEEEEeCC--------------CcEEEecCCCC
Q 011256 451 GTGKATCVKFGPDAKYIAVGSMD--------------RNLRVFGLPGN 484 (490)
Q Consensus 451 ~~~~v~~~~~s~~~~~l~s~~~d--------------g~v~iw~~~~~ 484 (490)
......+.+ ++++++.||.+ ..+.+||+..+
T Consensus 244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 112222333 56777777754 35777887653
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.33 E-value=0.031 Score=52.29 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=111.9
Q ss_pred CCCEEEEEeC-CCcEEEEeCCC--CcEEEEecc----CccCEEEEEEeeCCCEEEEEeC-C---------CcEEEEeCCC
Q 011256 198 SKDVIATGGV-DTNAVLFDRPS--GQIVTTLSG----HSKKVTSVKFVTEGDLFLTGSA-D---------KTVRVWQGSE 260 (490)
Q Consensus 198 ~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~-d---------g~i~iwd~~~ 260 (490)
++.+++.||. ...+.+||..+ .+- ..+.. ....-.++.+ ++.+++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W-~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKW-TALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCE-EECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCe-eECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 5667777764 34688899864 222 22221 1111122222 6777777765 2 4688899877
Q ss_pred CCccceeeeec-ccccceEEEEEecCCCEEEEEECC---------------------------------------CeEEE
Q 011256 261 DGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLD---------------------------------------NTWCF 300 (490)
Q Consensus 261 ~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~d---------------------------------------g~i~i 300 (490)
. .+..+..+. .......++. .++..++.|+.+ ..+.+
T Consensus 96 ~-~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 96 N-SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp T-EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred C-cEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 3 333333222 1111122222 467778888754 57899
Q ss_pred EeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC------CCcEEEEEC--CCCce--eeeecCCCCCeEEEE
Q 011256 301 YDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS------EALVKIWDV--KSQAN--VAKFDGHVGAVTAIS 370 (490)
Q Consensus 301 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~------dg~i~iwd~--~~~~~--~~~~~~~~~~i~~l~ 370 (490)
||+.+......-.... ..... .+++.. ++.+++.|+. ...+.+||+ .+.+- +..+..........+
T Consensus 173 yd~~~~~W~~~~~~p~--~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPW--YGTAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA 248 (357)
T ss_dssp EETTTTEEEEEEECSS--CCCBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred EeCCCCcEEECCCCCC--CCccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence 9999887655432211 00111 223332 5677777764 245777887 43321 111211111111111
Q ss_pred EcCCCCEEEEEeCC-----------------------CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 371 FSENGYYLATAAHD-----------------------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 371 ~s~~~~~l~~~~~d-----------------------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
...++++++.|+.+ .+.+||+.+.+-...-..........+ +..++++++.|+.+
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGET 326 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEEC
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeC
Confidence 22256677776521 277899887654332222211222222 33467777778754
Q ss_pred ------eEEEEEeecCCcceEeeeecC
Q 011256 428 ------IRVYQVASVKADWNCIKTFPD 448 (490)
Q Consensus 428 ------i~v~~~~~~~~~~~~~~~~~~ 448 (490)
-.+|.++...+.+.....+..
T Consensus 327 ~~~~~~~~v~~l~~~~~~~~~~~~~~~ 353 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNKVTVQNLEHH 353 (357)
T ss_dssp GGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred CCCCEeeeEEEEEEcCcEeEeeecccc
Confidence 234433333344544444433
No 325
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.32 E-value=0.067 Score=50.00 Aligned_cols=233 Identities=10% Similarity=0.067 Sum_probs=112.6
Q ss_pred CCCEEEEEeCC-CcEEEEeCCC-CCccceeeeec-ccccceEEEEEecCCCEEEEEEC-C---------CeEEEEeCCCC
Q 011256 240 EGDLFLTGSAD-KTVRVWQGSE-DGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASL-D---------NTWCFYDLSSG 306 (490)
Q Consensus 240 ~~~~l~s~s~d-g~i~iwd~~~-~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~-d---------g~i~iwd~~~~ 306 (490)
++.+++.|+.+ ..+.+||... ...+..+..+. .....-.++.+ ++..++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666543 4678888764 23344333333 11111122222 5667777765 2 46889999887
Q ss_pred eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCC---------------------------------------CcEEE
Q 011256 307 ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSE---------------------------------------ALVKI 347 (490)
Q Consensus 307 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---------------------------------------g~i~i 347 (490)
......... .....-.+++. .++.+++.|+.+ ..+.+
T Consensus 97 ~W~~~~~~~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (357)
T 2uvk_A 97 SWVKLMSHA---PMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS 172 (357)
T ss_dssp EEEECSCCC---SSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred cEEECCCCC---CcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence 755432211 01111122222 577888888764 47899
Q ss_pred EECCCCce--eeeecCCCCCeEEEEEcCCCCEEEEEeC-------CCEEEEEC--CCCcceeeeecCCCCCCeeEEEEcC
Q 011256 348 WDVKSQAN--VAKFDGHVGAVTAISFSENGYYLATAAH-------DGVKLWDL--RKLKNFRSFESSDSETPTNSVDFDH 416 (490)
Q Consensus 348 wd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~-------d~i~iwd~--~~~~~~~~~~~~~~~~~i~~i~~s~ 416 (490)
||+.+.+- +..+......-.+++.. ++++++.|+. +.+.+||+ .+..-...-............+...
T Consensus 173 yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 251 (357)
T 2uvk_A 173 FDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS 251 (357)
T ss_dssp EETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE
T ss_pred EeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE
Confidence 99987642 22222111110233332 5666666653 12777887 3332211111110011112112223
Q ss_pred CCCEEEEEec------------------------CeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeC
Q 011256 417 SGSYLAVASA------------------------DIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSM 472 (490)
Q Consensus 417 ~~~~l~~~~~------------------------di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 472 (490)
++.+++.|+. ++.+|++ ....|..+..++.. ...-.++. .++++++.||.
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~--~~~~W~~~~~~p~~--r~~~~~~~--~~~~i~v~GG~ 325 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW--HNGKWDKSGELSQG--RAYGVSLP--WNNSLLIIGGE 325 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEEC--C---CEEEEECSSC--CBSSEEEE--ETTEEEEEEEE
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEec--CCCceeeCCCCCCC--cccceeEE--eCCEEEEEeee
Confidence 5666677662 2455555 34668877665543 11222233 37788888886
Q ss_pred CC------cEEEecCCCCC
Q 011256 473 DR------NLRVFGLPGND 485 (490)
Q Consensus 473 dg------~v~iw~~~~~~ 485 (490)
++ .|.++++++++
T Consensus 326 ~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCEeeeEEEEEEcCcE
Confidence 53 35556777654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.30 E-value=0.032 Score=52.57 Aligned_cols=146 Identities=14% Similarity=0.212 Sum_probs=91.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceeeeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-----------
Q 011256 240 EGDLFLTGSADKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI----------- 307 (490)
Q Consensus 240 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~----------- 307 (490)
+|..++.+- ++.||.-++.....++.+..-. -.-..|..+..+|+|++|+..+. ..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 454444433 3667766766443333332211 01235788999999999998865 588888877332
Q ss_pred -EEEEeecCCCC-CCCCCceEEEEcCC---CcEEEEEcCCCcEEEEECCCC--ceeeeec---------CCCCCeEEEEE
Q 011256 308 -CLTQVSDAGTD-GRPEGYTSAAFHPD---GLILGTGTSEALVKIWDVKSQ--ANVAKFD---------GHVGAVTAISF 371 (490)
Q Consensus 308 -~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~--~~~~~~~---------~~~~~i~~l~~ 371 (490)
....+...... ....+|..+.|||- +..|++-..|+.|++||+... ++. .+. .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 11222221111 12478999999994 568999999999999999753 222 221 22357889999
Q ss_pred cCCCCEEEEEe--CCC-EEE
Q 011256 372 SENGYYLATAA--HDG-VKL 388 (490)
Q Consensus 372 s~~~~~l~~~~--~d~-i~i 388 (490)
..++-.|...+ .+| |+-
T Consensus 188 g~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEecCCCCCEEE
Confidence 99887777755 666 643
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.28 E-value=0.13 Score=48.58 Aligned_cols=227 Identities=13% Similarity=0.156 Sum_probs=138.3
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecc
Q 011256 193 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272 (490)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 272 (490)
.-.+|..+.+|.=. ..++.|||+++...+..+.- ...|.-=.|-.+.. |+..+ +..|.-|++.... .+...+..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s--~P~kvFdR 144 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES--QPVKMFDR 144 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSC--CCEEEEEC
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-CCeeEEecccCCC--Cchhheec
Confidence 34677777776654 67899999999988888774 34577777765544 44444 3679999997643 44555544
Q ss_pred cc----cceEEEEEecCCCEEEEEEC-------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC---CcEEEE
Q 011256 273 HT----AEVQAVTVHATNKYFVTASL-------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD---GLILGT 338 (490)
Q Consensus 273 h~----~~v~~l~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~ 338 (490)
|. ..|..-..+++.++++..|- .|.+.+|..+.+.... + .+|......+.+..+ ..+|+.
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-i-----eGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-I-----EGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE-E-----CCSEEEEEEEECTTCSSEEEEEEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch-h-----eeeeeeeEEEecCCCCCCceEEEE
Confidence 43 46777777888887765442 3678889887664321 1 122222222211111 123333
Q ss_pred EcC---CCcEEEEECCCC---c------eeeeec---CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 339 GTS---EALVKIWDVKSQ---A------NVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 339 g~~---dg~i~iwd~~~~---~------~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
+.. .+.++|.++... . .+..+- ...+-..++..++.-..+..-+..| |.+||+.++.++..-..
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 333 378999988542 1 111111 1234567888888877888888888 99999999998876665
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEecCeEEEEE
Q 011256 403 SDSETPTNSVDFDHSGSYLAVASADIRVYQV 433 (490)
Q Consensus 403 ~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 433 (490)
. ..+|..-+.+....-+++....+.|+.+
T Consensus 299 s--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 299 S--GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp C--SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred c--CCceEEecccCCCCcEEEEccCceEEEE
Confidence 4 4455555555444445544555555554
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.24 E-value=0.16 Score=49.13 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=61.5
Q ss_pred cCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecc------cccceEEEEEecC---CCEEEEEEC------
Q 011256 230 KKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD------HTAEVQAVTVHAT---NKYFVTASL------ 294 (490)
Q Consensus 230 ~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~~~~---~~~l~s~~~------ 294 (490)
.....++|.|+|+++++-...+.|.+++..++ ....+..+.. ....+..|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34679999999997766544346888875432 2222322321 2456789999995 555544432
Q ss_pred -------CCeEEEEeCCCC--eE--EEE-eecCCCCCCCCCceEEEEcCCCcEEEEEc
Q 011256 295 -------DNTWCFYDLSSG--IC--LTQ-VSDAGTDGRPEGYTSAAFHPDGLILGTGT 340 (490)
Q Consensus 295 -------dg~i~iwd~~~~--~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 340 (490)
...|.-|++..+ .. ... +... ..........+.|.|||.++++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~-p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGL-PSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEE-CCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcC-CCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665332 11 111 1101 111123468899999998777654
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.23 E-value=0.12 Score=47.36 Aligned_cols=184 Identities=14% Similarity=0.136 Sum_probs=93.8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEE-EeccCccCEEEEEEeeCCCEEEEEeC----CC-------cEEEEeCCCCCccceee
Q 011256 201 VIATGGVDTNAVLFDRPSGQIVT-TLSGHSKKVTSVKFVTEGDLFLTGSA----DK-------TVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~~ 268 (490)
+++.|+. .+.+||..+++-.. .+..............++.+++.|+. ++ .+.+||..+. .+..+.
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-EWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT-EEEECS
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC-cEEECC
Confidence 4455553 38899988776543 11111112222233447778888873 12 1677887663 233332
Q ss_pred eecccccceEEEEEecCCCEEEEEECC-------CeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLD-------NTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
.+........ ++.. ++..++.|+.+ ..+.+||+.+......-.... .... .+++. .++.+++.|+.
T Consensus 95 ~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~---~r~~-~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 95 PLPSARCLFG-LGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI---KVYG-HNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp CBSSCBCSCE-EEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS---CEES-CEEEE-ETTEEEEECCE
T ss_pred CCCccccccc-eEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC---cccc-cEEEE-ECCEEEEEcCC
Confidence 2221111112 2222 56777777754 358889998877554322110 0011 12222 46777777764
Q ss_pred ------CCcEEEEECCCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCC------CEEEEECCCCcc
Q 011256 342 ------EALVKIWDVKSQANVA--KFDGHVGAVTAISFSENGYYLATAAHD------GVKLWDLRKLKN 396 (490)
Q Consensus 342 ------dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d------~i~iwd~~~~~~ 396 (490)
-..+.+||+.+.+-.. .+.........+.+ ++++++.|+.+ .+.+||+.+.+-
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 2358999998764222 12111112222333 56777776543 277899887653
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.23 E-value=0.13 Score=47.65 Aligned_cols=231 Identities=8% Similarity=0.042 Sum_probs=123.6
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcE--EEEe----ccCccCEEEEEEeeC---CCEEEEE---eCCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQI--VTTL----SGHSKKVTSVKFVTE---GDLFLTG---SADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~l~~~~~---~~~l~s~---s~dg~i~iw 256 (490)
.-..|+|.|+|.++++--..|.|++++...+.. +..+ .........|+|+|+ +..|+.. ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 567999999999887765589999998765553 2222 123566899999985 3334332 234556666
Q ss_pred eCCCCC-------ccceee-eec-ccccceEEEEEecCCCEEEEEEC-------------CCeEEEEeCCCCe-------
Q 011256 257 QGSEDG-------NYDCKH-TLK-DHTAEVQAVTVHATNKYFVTASL-------------DNTWCFYDLSSGI------- 307 (490)
Q Consensus 257 d~~~~~-------~~~~~~-~~~-~h~~~v~~l~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~------- 307 (490)
...... ..+.+. .+. .....-..|.|.|+|.++++.+. .|.|.-++.....
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~ 192 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP 192 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC
Confidence 655411 111111 121 11123457999999987777543 2455555543220
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-CCCcEEEEECCCCc------------------eeeeecCCCCCeEE
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-SEALVKIWDVKSQA------------------NVAKFDGHVGAVTA 368 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~------------------~~~~~~~~~~~i~~ 368 (490)
....+. .++ .....++|+|+|.++++-. .++.=.|.-+..+. ++..+..+......
T Consensus 193 ~~~i~a----~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 193 GSPVYS----YGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp TCCEEE----BCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCeEEe----eCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 000111 122 2356899999887666532 22222222222221 12222222235677
Q ss_pred EEEcCCCCEEEEEeCCC-EEEEECCCCccee--eeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 369 ISFSENGYYLATAAHDG-VKLWDLRKLKNFR--SFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 369 l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~--~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
++|. +|..++..-... |....+....... ..........+..+...|+|.++++..
T Consensus 268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 7776 455555555444 6666665443211 111111245789999999997766654
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.19 E-value=0.14 Score=47.37 Aligned_cols=232 Identities=12% Similarity=0.109 Sum_probs=120.7
Q ss_pred ccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeee----cccccceEEEEEecC---CCEEEEE-E--CCCeE
Q 011256 229 SKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTL----KDHTAEVQAVTVHAT---NKYFVTA-S--LDNTW 298 (490)
Q Consensus 229 ~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~h~~~v~~l~~~~~---~~~l~s~-~--~dg~i 298 (490)
-.....|+|.|+|.++++--..|.|++++...+. ...+..+ .........|+++|+ +..|... + .++.|
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-EeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 3457899999999977766558999999765432 1222222 223457899999995 3444432 2 44566
Q ss_pred EEEeCCCC----------eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC-------------CCcEEEEECCCC--
Q 011256 299 CFYDLSSG----------ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS-------------EALVKIWDVKSQ-- 353 (490)
Q Consensus 299 ~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-------------dg~i~iwd~~~~-- 353 (490)
.-|.+..+ +.+..-... ... .....+.|.|||.++++.+. .|.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~--H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK-GVI--HNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC-CSS--CCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC-CCC--ccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 66766541 122111111 112 23467999999987777442 355555554321
Q ss_pred -------ceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CC-EEEEECCCCcce------------------eeeecCCCC
Q 011256 354 -------ANVAKFDGHVGAVTAISFSENGYYLATAAH-DG-VKLWDLRKLKNF------------------RSFESSDSE 406 (490)
Q Consensus 354 -------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d~-i~iwd~~~~~~~------------------~~~~~~~~~ 406 (490)
..+.. .+|. ....++|+|+|.+.++-.. ++ =.|.-+..+... ..+.. +.
T Consensus 187 ~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~--~~ 262 (347)
T 3das_A 187 PGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST--DE 262 (347)
T ss_dssp TTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--TT
T ss_pred CCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--CC
Confidence 01111 2343 4578999998876665432 22 222222222211 11110 01
Q ss_pred CCeeEEEEcCCCCEEEEEecCeEEEEEeecCCc--ceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 407 TPTNSVDFDHSGSYLAVASADIRVYQVASVKAD--WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 407 ~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.....++|. +|..+...-..-+||.+...... ......+.. ..+.+..++..|||.++++.+
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence 234566665 34444443333344444322111 111112222 246899999999998766643
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.19 E-value=0.018 Score=48.99 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=86.9
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCcee------eee-c-CCCCCeEEEEEcCCCCEEEEEeCCCEEEEECCC
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANV------AKF-D-GHVGAVTAISFSENGYYLATAAHDGVKLWDLRK 393 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~------~~~-~-~~~~~i~~l~~s~~~~~l~~~~~d~i~iwd~~~ 393 (490)
..+..++|+|+|.+.++ .+|.++-.+..+.... ..+ . +-. ...++.|.|+|.+.++ +++.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36789999999997777 6787777776552211 111 0 111 2478999999998888 443376666433
Q ss_pred Cccee------eeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecC---CcceEeeeecCCCCCcceEEEEEcCCC
Q 011256 394 LKNFR------SFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDA 464 (490)
Q Consensus 394 ~~~~~------~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~ 464 (490)
..... .+.. ..-..+..+.|+|+|.+.++. +.++|...... ..|.................+.|.++|
T Consensus 117 ~~~~~Wl~~a~~vg~-~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGS-GGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEEC-SSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEecc-CCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 21111 1111 012457899999999998888 43455432211 112111111111223345667799999
Q ss_pred CeEEEEeCCCcEEEecCCCC
Q 011256 465 KYIAVGSMDRNLRVFGLPGN 484 (490)
Q Consensus 465 ~~l~s~~~dg~v~iw~~~~~ 484 (490)
.+.++. +| ++|....+
T Consensus 194 ~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CEEEEE--TT--EEEEESCC
T ss_pred cEEEEe--CC--eEEecCCc
Confidence 877666 77 45555443
No 333
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.16 E-value=0.13 Score=46.53 Aligned_cols=257 Identities=8% Similarity=0.039 Sum_probs=150.3
Q ss_pred CCcEEEEeCCCCcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCC
Q 011256 208 DTNAVLFDRPSGQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATN 286 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 286 (490)
+..|.|.|+.++..+.+.. .-. +.-.+|..+.+|.-. ..++.|+|+++. ..+..+. ....|..-.|-. .
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK---~klks~~-~~e~VvfWkWis-~ 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHT-MTDDVTFWKWIS-L 117 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTT---EEEEEEE-CSSCEEEEEECS-S
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHh---hhhccee-cCCccEEEEecC-C
Confidence 3478888988755433221 122 233488888777665 578999999986 3444433 345777777864 4
Q ss_pred CEEEEEECCCeEEEEeCCC-CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-------CCCcEEEEECCCCceeee
Q 011256 287 KYFVTASLDNTWCFYDLSS-GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------SEALVKIWDVKSQANVAK 358 (490)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------~dg~i~iwd~~~~~~~~~ 358 (490)
+.|+..+. ..|+-|+++. ..+...+..+... ....|..-..+++.++++..+ -.|.+.+|..+.+ .-+.
T Consensus 118 ~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ 194 (365)
T 2xzh_A 118 NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP 194 (365)
T ss_dssp SEEEEEES-SEEEEEESSTTCCCEEEEECCGGG-TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEE
T ss_pred CeEEEEcC-CcEEEEcccCCCCCceeeecchhc-ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccce
Confidence 44554443 5899999975 3444555443222 236677778888888777643 2367889987654 4456
Q ss_pred ecCCCCCeEEEEEcCC---CCEEEEEeCC---C-EEEEECCCC---cc-----eee--eecCCCCCCeeEEEEcCCCCEE
Q 011256 359 FDGHVGAVTAISFSEN---GYYLATAAHD---G-VKLWDLRKL---KN-----FRS--FESSDSETPTNSVDFDHSGSYL 421 (490)
Q Consensus 359 ~~~~~~~i~~l~~s~~---~~~l~~~~~d---~-i~iwd~~~~---~~-----~~~--~~~~~~~~~i~~i~~s~~~~~l 421 (490)
+++|......+.+.-+ ..+++.+... + ++|.++... .. ... +.......-..++..++....+
T Consensus 195 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygvi 274 (365)
T 2xzh_A 195 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 274 (365)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEE
T ss_pred eeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEE
Confidence 6777654433333221 1234433332 3 888888543 11 111 1111123445678888887777
Q ss_pred EEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 422 AVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 422 ~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
+.-+.- +++||+ .+..++..-.-- ...|...+-+....-++..+..|.|.--.++.
T Consensus 275 yviTK~G~ihlyDl----eTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 275 FLITKYGYIHLYDL----ETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEEeCCcEEEEEEc----ccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 777766 888887 455555443332 44555555544444455666788776665554
No 334
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.09 E-value=0.16 Score=46.09 Aligned_cols=225 Identities=14% Similarity=0.169 Sum_probs=135.0
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecc
Q 011256 193 LDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD 272 (490)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 272 (490)
.-.+|..+.+|.-. ..++.+||+++...++.+.- ...|.-=.|-.+.. |+..+. ..|.-|++.... .+...+..
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~-L~lVT~-taVyHWs~~~~s--~P~kvFdR 145 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVTD-NAVYHWSMEGES--QPVKMFDR 145 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSE-EEEEES-SEEEEEESSTTC--CCEEEEEC
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCe-EEEEcC-CcEEEEcccCCC--CCceeeec
Confidence 33577777777655 67899999999988888774 45677778864443 444443 579999997643 44444444
Q ss_pred cc----cceEEEEEecCCCEEEEEEC-------CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC-----cEE
Q 011256 273 HT----AEVQAVTVHATNKYFVTASL-------DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG-----LIL 336 (490)
Q Consensus 273 h~----~~v~~l~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l 336 (490)
|. ..|..-..+++.+.++..+- .|.+.+|..+.+.... +. +|.... ..+-.+| .+|
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~-ie-----Ghaa~F--~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IE-----GHAASF--AQFKMEGNAEESTLF 217 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE-EC-----CSEEEE--EEECCTTCSSCEEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccce-ee-----eeeeee--EEEecCCCCCCceEE
Confidence 33 46777777888887765542 3678889888764321 11 221111 1121121 233
Q ss_pred EEEcC---CCcEEEEECCCC---c------eeeeec---CCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeee
Q 011256 337 GTGTS---EALVKIWDVKSQ---A------NVAKFD---GHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSF 400 (490)
Q Consensus 337 ~~g~~---dg~i~iwd~~~~---~------~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~ 400 (490)
+.+.. .+.++|.++... . .+..+- ...+-..++..++.-..+..-+..| |.+||+.++.++..-
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 33222 258889888432 1 111111 1234566788888777888888888 999999999987766
Q ss_pred ecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEE
Q 011256 401 ESSDSETPTNSVDFDHSGSYLAVASADIRVYQV 433 (490)
Q Consensus 401 ~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~ 433 (490)
... ..+|..-+.+....-+++....+.|+.+
T Consensus 298 rIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 298 RIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp ECC--SSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred ccC--CCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 554 3444444444343334444444444444
No 335
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.08 E-value=0.024 Score=58.40 Aligned_cols=197 Identities=10% Similarity=0.064 Sum_probs=106.6
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCcEEEEe-c-----cCcc-CEEEEEEee-CCCEEEEEeCCC------cEEEEeC
Q 011256 197 YSKDVIATGGVD----TNAVLFDRPSGQIVTTL-S-----GHSK-KVTSVKFVT-EGDLFLTGSADK------TVRVWQG 258 (490)
Q Consensus 197 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~h~~-~v~~l~~~~-~~~~l~s~s~dg------~i~iwd~ 258 (490)
.++.+++.||.+ ..+.+||..+++-...- . .... .-.+++..+ ++.+++.||.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 457788888753 46888998776544332 1 0111 112333333 677777777543 4778888
Q ss_pred CCCCccceeeeecccccceEEEEEecCCCEEEEEECCC--eEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCC-CcE
Q 011256 259 SEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDN--TWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPD-GLI 335 (490)
Q Consensus 259 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 335 (490)
.+. .+..+..+......- +++...++..++.|+.++ .+.+||..+....................++.+..+ +.+
T Consensus 476 ~t~-~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTR-EWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTT-EEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCC-cEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 763 333333222111111 222223788888887655 699999998875543321000011122334555555 777
Q ss_pred EEEEcC--C-----CcEEEEECCCCce-----eeeec----CCCCCeEEEEEcCCCCEEEEEeCC--------C-EEEEE
Q 011256 336 LGTGTS--E-----ALVKIWDVKSQAN-----VAKFD----GHVGAVTAISFSENGYYLATAAHD--------G-VKLWD 390 (490)
Q Consensus 336 l~~g~~--d-----g~i~iwd~~~~~~-----~~~~~----~~~~~i~~l~~s~~~~~l~~~~~d--------~-i~iwd 390 (490)
++.|+. + ..+.+||+.+..- -..+. .......++ ...++++++.|+.+ . |.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 888765 2 3588999987761 11111 111122223 33336777777631 2 89999
Q ss_pred CCCCcc
Q 011256 391 LRKLKN 396 (490)
Q Consensus 391 ~~~~~~ 396 (490)
+.+..-
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 987654
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.93 E-value=0.023 Score=48.31 Aligned_cols=182 Identities=11% Similarity=0.076 Sum_probs=100.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC--ccceeeeeccc--ccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeE------EE
Q 011256 241 GDLFLTGSADKTVRVWQGSEDG--NYDCKHTLKDH--TAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGIC------LT 310 (490)
Q Consensus 241 ~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~ 310 (490)
..+|+....| +|+.=...... .+....+..+. =..+..++|+|++.+.++ .+|.+.-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456667777 55554443332 12111111122 236789999998886666 777777777644211 11
Q ss_pred EeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceee------ee-cCCCCCeEEEEEcCCCCEEEEEeC
Q 011256 311 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVA------KF-DGHVGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~------~~-~~~~~~i~~l~~s~~~~~l~~~~~ 383 (490)
.+-.. +- ....++.|.|+|.+.++ .||.|+-++..+..... .+ ...=..+..|.|.|+|.+.++. +
T Consensus 81 ~IG~~---Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d 153 (236)
T 1tl2_A 81 KIGNG---GW-NQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G 153 (236)
T ss_dssp EEECS---CG-GGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T
T ss_pred Eeccc---cc-ccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C
Confidence 11110 11 12578999999998888 56999888764321111 01 1111467999999999988888 3
Q ss_pred CCEEEEECCCCcc-----eeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEe
Q 011256 384 DGVKLWDLRKLKN-----FRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVA 434 (490)
Q Consensus 384 d~i~iwd~~~~~~-----~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~ 434 (490)
+.++-+....... .........-.....+.|++++.+.++. +.++|...
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~~~ 207 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYEDY 207 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEEES
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEEecC
Confidence 3343222221110 0111111112234556789999888777 66787763
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.92 E-value=0.29 Score=46.24 Aligned_cols=258 Identities=9% Similarity=0.044 Sum_probs=153.2
Q ss_pred CCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCC
Q 011256 208 DTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNK 287 (490)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 287 (490)
+..|.|.|+.++..+.+..-. --+.-.+|..+.++.=. ..++.|||+++. ..+..+. ....|..-.|-.. +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K---~klks~~-~~e~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHT-MTDDVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTT---EEEEEEE-CSSCCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHh---hhhccee-cCCCceEEEecCC-C
Confidence 447888898875543322211 11334578887776655 678999999886 3444333 2346777777643 4
Q ss_pred EEEEEECCCeEEEEeCCCC-eEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEc-------CCCcEEEEECCCCceeeee
Q 011256 288 YFVTASLDNTWCFYDLSSG-ICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGT-------SEALVKIWDVKSQANVAKF 359 (490)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-------~dg~i~iwd~~~~~~~~~~ 359 (490)
.|+..+ +..|+-|++... .+...+..+... ....|..-..+++.++++..+ -.|.+.+|....+ .-+.+
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~i 194 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPI 194 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG-TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEE
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc-ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchh
Confidence 444443 468999999743 444555443222 236677778888988877543 2467889987654 44567
Q ss_pred cCCCCCeEEEEEcCC---CCEEEEEeCC---C-EEEEECCCC---cc-----eee--eecCCCCCCeeEEEEcCCCCEEE
Q 011256 360 DGHVGAVTAISFSEN---GYYLATAAHD---G-VKLWDLRKL---KN-----FRS--FESSDSETPTNSVDFDHSGSYLA 422 (490)
Q Consensus 360 ~~~~~~i~~l~~s~~---~~~l~~~~~d---~-i~iwd~~~~---~~-----~~~--~~~~~~~~~i~~i~~s~~~~~l~ 422 (490)
++|......+.+.-+ ..+++.+... + ++|.++... .. ... +.......-..++..++....++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 777665554444322 1345555443 3 899988543 11 111 11111234456788888888877
Q ss_pred EEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 423 VASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 423 ~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
.-+.- +.+||+ .+..++..-.-- ...|...+.+....-++..+..|.|.--.++.
T Consensus 275 viTK~G~i~lyDl----eTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 275 LITKYGYIHLYDL----ETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEETTSEEEEEET----TTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred EEecCceEEEEec----ccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 77766 888887 445555443322 44565555555555566666888776665554
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.88 E-value=0.37 Score=46.96 Aligned_cols=258 Identities=12% Similarity=0.137 Sum_probs=142.7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEeccC-------------------------ccCEE--EEEEe---eCCCEEEEEe-C
Q 011256 201 VIATGGVDTNAVLFDRPSGQIVTTLSGH-------------------------SKKVT--SVKFV---TEGDLFLTGS-A 249 (490)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------------------~~~v~--~l~~~---~~~~~l~s~s-~ 249 (490)
.+.+||..|.|+|+-+.+++.+..+.-. .+... .+.+. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4567888999999999999888876411 01111 23332 2667777665 3
Q ss_pred CCcEEEEeCCCCCccceeeeec-ccccceEEEEEe--cCCCEEEEEEC-------CCeE------------EEEeCCCCe
Q 011256 250 DKTVRVWQGSEDGNYDCKHTLK-DHTAEVQAVTVH--ATNKYFVTASL-------DNTW------------CFYDLSSGI 307 (490)
Q Consensus 250 dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~s~~~-------dg~i------------~iwd~~~~~ 307 (490)
+..|-.-+++.- ++-..+. .....+.++.|. |+..|+++++. ||.. ...|..+.+
T Consensus 152 n~RvAri~l~~~---~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~ 228 (638)
T 3sbq_A 152 NSRVARIRLDIM---KCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETME 228 (638)
T ss_dssp TTEEEEEETTTT---EEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCS
T ss_pred CcceEEEECCcE---eeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccE
Confidence 556666777664 3333332 244567888886 67788888765 2321 112333333
Q ss_pred EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCC---------------cEEEEE-----------------------
Q 011256 308 CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEA---------------LVKIWD----------------------- 349 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg---------------~i~iwd----------------------- 349 (490)
...++... .....+...++|.+.++.+.+. .+.+++
T Consensus 229 v~~Qv~v~------gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 229 MAFQVIVD------GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp EEEEEEES------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred EEEEEEcC------CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 33332211 1222344466666666544221 334444
Q ss_pred --CCC----CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--EEEEECCCCcce---------ee-eecCCCCCCeeE
Q 011256 350 --VKS----QANVAKFDGHVGAVTAISFSENGYYLATAAHDG--VKLWDLRKLKNF---------RS-FESSDSETPTNS 411 (490)
Q Consensus 350 --~~~----~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~--i~iwd~~~~~~~---------~~-~~~~~~~~~i~~ 411 (490)
.+. +..+..+..-......+.++|||+++++++.-. +.++|+++.... .. ............
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 332 111111111223456788999999999988764 999999853210 00 111112455788
Q ss_pred EEEcCCCCEEEEE-ecC--eEEEEEeec------CCcceEeeeecCCCCCcceEEEEE------cCCCCeEEEEe
Q 011256 412 VDFDHSGSYLAVA-SAD--IRVYQVASV------KADWNCIKTFPDLSGTGKATCVKF------GPDAKYIAVGS 471 (490)
Q Consensus 412 i~~s~~~~~l~~~-~~d--i~v~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~s~~ 471 (490)
.+|+++| ..++. .-| +.-|++... .+.+..+..+..|-. +-.+.- .+||++|++.+
T Consensus 383 t~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq---pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 383 TTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ---PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC---EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC---CcccccCCCccCCCCccEEEEec
Confidence 9999999 44444 344 888998542 222345555555422 222322 56889988875
No 339
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.79 E-value=0.056 Score=50.91 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=77.6
Q ss_pred EcCCCCEEEEEeCCCEEEEECCCCcceeeeecCC--CCCCeeEEEEcCCCCEEEEEecC-eEEEEEeecCCcc-------
Q 011256 371 FSENGYYLATAAHDGVKLWDLRKLKNFRSFESSD--SETPTNSVDFDHSGSYLAVASAD-IRVYQVASVKADW------- 440 (490)
Q Consensus 371 ~s~~~~~l~~~~~d~i~iwd~~~~~~~~~~~~~~--~~~~i~~i~~s~~~~~l~~~~~d-i~v~~~~~~~~~~------- 440 (490)
.+.+|.-++.+-++.||.-++......+.+.... .-..+..+..+|+|.+||..+.. +.|..+.......
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 3456777777766558888877555555555542 12367889999999999999888 9998886321100
Q ss_pred -eEeeeecCC----CCCcceEEEEEcCC---CCeEEEEeCCCcEEEecCCC
Q 011256 441 -NCIKTFPDL----SGTGKATCVKFGPD---AKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 441 -~~~~~~~~~----~~~~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~~~ 483 (490)
-..+.+... ....+|..+.|+|- +..|++-..|+.|++||+..
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 011222211 12467999999994 56799999999999999986
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.36 E-value=0.3 Score=47.24 Aligned_cols=103 Identities=10% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCce--eeeecC------CCCCeEEEEEcCC---CCEEE-EEeC------
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQAN--VAKFDG------HVGAVTAISFSEN---GYYLA-TAAH------ 383 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~l~~s~~---~~~l~-~~~~------ 383 (490)
.....++|.|+|+++++-...+.|++++..+++. +..+.. ..+....|+|+|+ +.+|. +.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4567999999999877765545788888655543 222221 2456789999995 44444 4332
Q ss_pred ------CC-EEEEECCCC-------ccee-eeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 384 ------DG-VKLWDLRKL-------KNFR-SFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 384 ------d~-i~iwd~~~~-------~~~~-~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
.. |.-|++... +.+. .+.. ........+.|+|+|.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence 12 655655322 1111 1221 1234578999999998777654
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.30 E-value=0.23 Score=54.09 Aligned_cols=196 Identities=13% Similarity=0.188 Sum_probs=114.4
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeeccc-
Q 011256 195 IHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH- 273 (490)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h- 273 (490)
.+|..+.+|.-. ..++.|||+.+...+..+.- ..+|.-=.|-.+.. |+..+ +..|.-|++.+.. .+...+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s--~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES--QPVKMFDRHS 146 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCC--ccHHHHhcch
Confidence 566666666544 67899999998877777663 44577777764444 44333 3579999996532 444444444
Q ss_pred ---ccceEEEEEecCCCEEEEEE-------CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc--C-CCcEEEEEc
Q 011256 274 ---TAEVQAVTVHATNKYFVTAS-------LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH--P-DGLILGTGT 340 (490)
Q Consensus 274 ---~~~v~~l~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~g~ 340 (490)
...|..-..+++.++++..| -.|.+.+|..+.+.... ..||......+.+. + ...+++.+.
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~------iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP------IEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh------hhHhHhhhheeccCCCCCCceEEEEEE
Confidence 45677777788888776544 24778888877553211 11222222222211 1 112222221
Q ss_pred C---CCcEEEEECCCC---ce------eeeecC---CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeec
Q 011256 341 S---EALVKIWDVKSQ---AN------VAKFDG---HVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFES 402 (490)
Q Consensus 341 ~---dg~i~iwd~~~~---~~------~~~~~~---~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~ 402 (490)
. .+.++|.++... .. +..+-. ...-..++..++.-..+..-+..| |.+||+.++.++..-..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 1 367888887542 11 111111 123445677777766777777778 99999999987755443
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.015 Score=53.67 Aligned_cols=196 Identities=12% Similarity=0.143 Sum_probs=104.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEeccC-ccCEEEEEEe--e-CCCEEEEE-eCCCcEEEEeCCCCCccceeeeecc-
Q 011256 199 KDVIATGGVDTNAVLFDRPSGQIVTTLSGH-SKKVTSVKFV--T-EGDLFLTG-SADKTVRVWQGSEDGNYDCKHTLKD- 272 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~--~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~- 272 (490)
+.++++++.||.|+-+|..+|+..-++... ..++....-. + ++..++.. +.||.|..++..++. .+.......
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccc
Confidence 357888999999999999999999888754 1222221100 1 22333333 589999999987641 111111111
Q ss_pred -cccceEE---EEE-----ecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCC--CCceEEE---Ec--CCCcEE
Q 011256 273 -HTAEVQA---VTV-----HATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRP--EGYTSAA---FH--PDGLIL 336 (490)
Q Consensus 273 -h~~~v~~---l~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~---~~--~~~~~l 336 (490)
...++.. ..+ ...+..+++|+.+|.+...|+.+|+.+..+......++- ....|.. +. ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1112221 000 014668899999999999999999999988754221100 0001111 10 123567
Q ss_pred EEEcCCCcEEEEECCCCceeeeec-----CCCCC--e-EEEEEcCCCCEEEEEeCCC-EEEEECCCCccee
Q 011256 337 GTGTSEALVKIWDVKSQANVAKFD-----GHVGA--V-TAISFSENGYYLATAAHDG-VKLWDLRKLKNFR 398 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~~~~~~~~~~-----~~~~~--i-~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~ 398 (490)
+.|..+..+.+.+ ++|+ +..+. ..... + .+-.++.++.+++ ++.++ |..+|..++....
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-ECCCCEEEEEECCCCcEEE
Confidence 7777667777766 4443 21111 00000 0 0000112455544 56666 8889988877654
No 343
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.02 E-value=0.85 Score=41.33 Aligned_cols=174 Identities=9% Similarity=0.019 Sum_probs=98.2
Q ss_pred EEecCCCCEEEEEeCC--------------CcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEe--CCCc--EE
Q 011256 193 LDIHYSKDVIATGGVD--------------TNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGS--ADKT--VR 254 (490)
Q Consensus 193 ~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s--~dg~--i~ 254 (490)
--+++++++|+-+... ..|+..++..++...... .. +..|++++++|+-.. .++. |.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3467888877766542 356777776554332222 11 236788888877765 3444 44
Q ss_pred EEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCC
Q 011256 255 VWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDG 333 (490)
Q Consensus 255 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 333 (490)
..+++.. ....+..+.. ..++++++.|+..+. ...|...++..+.....+. ... ...++|++
T Consensus 133 ~~~~dGs----~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--------~~~-~~~~~P~g 195 (302)
T 3s25_A 133 RIRIDGE----EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--------CNC-YKPVVLDD 195 (302)
T ss_dssp EEETTSC----CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--------SCE-EEEEEEET
T ss_pred EEECCCC----CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--------CCc-cceeeecC
Confidence 4455432 2223332322 456778888877665 6788888988776543332 111 23466888
Q ss_pred cEEEEEcCC--CcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC--C-EEEEECCC
Q 011256 334 LILGTGTSE--ALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--G-VKLWDLRK 393 (490)
Q Consensus 334 ~~l~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--~-i~iwd~~~ 393 (490)
.+|+-...+ ..|..-++.... ...+.. ..+. .|+|++.+|.-++.. . |..-++..
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE--HYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCEE--EEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred CEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc--eEEECCCEEEEEECCCCcEEEEEECCC
Confidence 777765433 356666665443 333332 2333 377788888776443 2 66666654
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.77 E-value=0.71 Score=47.45 Aligned_cols=198 Identities=10% Similarity=-0.014 Sum_probs=102.0
Q ss_pred cCCCEEEEEECC----CeEEEEeCCCCeEEEEe-ecC-CCCCCCCCceEEEEcC-CCcEEEEEcCCC------cEEEEEC
Q 011256 284 ATNKYFVTASLD----NTWCFYDLSSGICLTQV-SDA-GTDGRPEGYTSAAFHP-DGLILGTGTSEA------LVKIWDV 350 (490)
Q Consensus 284 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~l~~g~~dg------~i~iwd~ 350 (490)
.++..++.||.+ ..+.+||..++...... ... ........-.+++..+ ++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356677777753 46888998887655433 100 0001111223334443 778888887543 5788998
Q ss_pred CCCceee--eecCCCCCeEEEEEcCCCCEEEEEeCCC---EEEEECCCCcceeeee---cCCCCCCeeEEEEcCC-CCEE
Q 011256 351 KSQANVA--KFDGHVGAVTAISFSENGYYLATAAHDG---VKLWDLRKLKNFRSFE---SSDSETPTNSVDFDHS-GSYL 421 (490)
Q Consensus 351 ~~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~d~---i~iwd~~~~~~~~~~~---~~~~~~~i~~i~~s~~-~~~l 421 (490)
.+.+-.. .+.... .-.+++...++++++.|+.++ +.+||..+..-...-. ..........+.+..+ +.++
T Consensus 476 ~t~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 8753221 121111 112333334778888887652 8999998765322211 1111223344555655 6677
Q ss_pred EEEec-----C--eEEEEEeecCCc------ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCC--------CcEEEec
Q 011256 422 AVASA-----D--IRVYQVASVKAD------WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMD--------RNLRVFG 480 (490)
Q Consensus 422 ~~~~~-----d--i~v~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~v~iw~ 480 (490)
+.|+. . -.+|.++..... |..+...... ......++. ..++++++.||.+ ..|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-QRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-CCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-CcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77764 1 234444333444 5555442111 111222233 3337777778743 4588888
Q ss_pred CCCC
Q 011256 481 LPGN 484 (490)
Q Consensus 481 ~~~~ 484 (490)
+..+
T Consensus 633 ~~t~ 636 (695)
T 2zwa_A 633 PLSE 636 (695)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7654
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.69 E-value=1.2 Score=40.40 Aligned_cols=244 Identities=7% Similarity=0.053 Sum_probs=129.4
Q ss_pred CCCCEEEEEe--CCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCC--------------CcEEEEeCCC
Q 011256 197 YSKDVIATGG--VDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSAD--------------KTVRVWQGSE 260 (490)
Q Consensus 197 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d--------------g~i~iwd~~~ 260 (490)
.++..|+... .++.|+..+..... ...+... .+--++++|++|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4577666554 25566666654333 3333321 133457889887776543 3566666665
Q ss_pred CCccceeeeecccccceEEEEEecCCCEEEEEE----CCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEE
Q 011256 261 DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTAS----LDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 261 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
.. ...+.. .. +..|+++++.|+... .+..|...++..... ..+... .+ ..+++++..|
T Consensus 98 ~~----~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~-------~~--~~~~~~g~~i 159 (302)
T 3s25_A 98 HG----STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNH-------YL--FTCNTSDRYF 159 (302)
T ss_dssp CC----CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESS-------CC--CCSEEETTEE
T ss_pred Cc----ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCC-------Cc--eEeeEECCEE
Confidence 42 111211 11 236777888888776 344566667664433 333321 11 3456677766
Q ss_pred EEEcC-CCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C--EEEEECCCCcceeeeecCCCCCCeeEE
Q 011256 337 GTGTS-EALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-G--VKLWDLRKLKNFRSFESSDSETPTNSV 412 (490)
Q Consensus 337 ~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-~--i~iwd~~~~~~~~~~~~~~~~~~i~~i 412 (490)
+-.+. ...|...++..+.....+. +... ..+.|++.+|+-...+ + |..-++..... ..+. ...+ .
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt----~~~~--~ 228 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT----EANI--E 228 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS----CSCE--E
T ss_pred EEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe----CCCc--c
Confidence 65544 5788888887665443333 2222 3456888888766544 2 66666654432 2222 1223 3
Q ss_pred EEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe-CCCcEEEecCCC
Q 011256 413 DFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS-MDRNLRVFGLPG 483 (490)
Q Consensus 413 ~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~ 483 (490)
.|+|++..|+.+... -.|+.++........+.. +.+.. +++.+.+|+-.. ..+.|..-++++
T Consensus 229 ~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~-------~~~~~--i~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 229 HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK-------GEFCN--INVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEE-------SCEEE--EEECSSEEEEEETTTCCEEEEESSS
T ss_pred eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeC-------Cccce--EEEeCCEEEEEECCCCeEEEEECCC
Confidence 478889988876432 566666543333222221 12333 344666666655 345555555443
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.28 Score=45.20 Aligned_cols=116 Identities=6% Similarity=0.058 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceeeeeccc-ccceEEEEEe--cCCCEEEEE--ECCCeEEEEeCCCCeEEEEeecCC
Q 011256 242 DLFLTGSADKTVRVWQGSEDGNYDCKHTLKDH-TAEVQAVTVH--ATNKYFVTA--SLDNTWCFYDLSSGICLTQVSDAG 316 (490)
Q Consensus 242 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~--~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~ 316 (490)
.+++.++.||.|.-+|..++ +....+... ..++....-. +.+..++.+ +.||.|..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG---~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG---HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT---EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 46888999999999998876 555554432 1222221100 112244444 589999999999886655444221
Q ss_pred CCCCCCCceE---EEE-c----CCCcEEEEEcCCCcEEEEECCCCceeeeecC
Q 011256 317 TDGRPEGYTS---AAF-H----PDGLILGTGTSEALVKIWDVKSQANVAKFDG 361 (490)
Q Consensus 317 ~~~~~~~v~~---~~~-~----~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 361 (490)
.. ...++.. ..+ . ..+..+++|+.+|.+...|+++|+.+..+..
T Consensus 88 lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 10 0111111 000 0 1456788999999999999999999988863
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.28 E-value=2 Score=40.46 Aligned_cols=274 Identities=11% Similarity=0.016 Sum_probs=129.5
Q ss_pred CEEEEEeCCCcEEEEeCCC-CcEEEEe--ccCccCEEEEEEee-CCCEEEEEeCCC----cEEEEeCCCCCccceeee--
Q 011256 200 DVIATGGVDTNAVLFDRPS-GQIVTTL--SGHSKKVTSVKFVT-EGDLFLTGSADK----TVRVWQGSEDGNYDCKHT-- 269 (490)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~-~~~~~~~--~~h~~~v~~l~~~~-~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~-- 269 (490)
..|.+|+..| +.+++... +..-..+ ......|.+|++.| +...|..++..| .|... .+.+..+..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccc
Confidence 4666777776 55555432 2222211 12235699999998 233344444444 34333 223333333221
Q ss_pred -ecc--------cccceEEEEEecC--CCEEEEEECCCeEEEEeCCCCeEEEEeecC---CC-----------CCCCCCc
Q 011256 270 -LKD--------HTAEVQAVTVHAT--NKYFVTASLDNTWCFYDLSSGICLTQVSDA---GT-----------DGRPEGY 324 (490)
Q Consensus 270 -~~~--------h~~~v~~l~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~-----------~~~~~~v 324 (490)
+.. ....|.++++.|. ...+.+++..+.|...+-. +.....+... .. ......+
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence 111 1125778888873 4556666666665554322 2222222110 00 0112357
Q ss_pred eEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeecC-----C--------CCCeEEEEEcCC-CCEEEEEeCCCEEEE
Q 011256 325 TSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDG-----H--------VGAVTAISFSEN-GYYLATAAHDGVKLW 389 (490)
Q Consensus 325 ~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~--------~~~i~~l~~s~~-~~~l~~~~~d~i~iw 389 (490)
.++.++|. ...++++..++.|...+ ..++.-..+.. + ...+.+|.+.|+ ...|.++...+|...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 78999883 34445554444444432 22222221110 0 124889999986 466777776666555
Q ss_pred ECCCCcceeeeecCCCC---CCeeEEEEcCC-CCEEEEEec-----------C--eEEEEEeecCCcceEeee-ecCCCC
Q 011256 390 DLRKLKNFRSFESSDSE---TPTNSVDFDHS-GSYLAVASA-----------D--IRVYQVASVKADWNCIKT-FPDLSG 451 (490)
Q Consensus 390 d~~~~~~~~~~~~~~~~---~~i~~i~~s~~-~~~l~~~~~-----------d--i~v~~~~~~~~~~~~~~~-~~~~~~ 451 (490)
+-. ++....+...... ..+..+.++|. ...|.++.. + ..||.-......|..+.. ++....
T Consensus 259 ~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~ 337 (394)
T 3b7f_A 259 DRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQA 337 (394)
T ss_dssp ETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSC
T ss_pred CCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccc
Confidence 422 2222222110001 33567888763 333444421 1 567766555566776542 111000
Q ss_pred Cc--ceEEEEEcCC-CCeEEEEeCCCcEEE
Q 011256 452 TG--KATCVKFGPD-AKYIAVGSMDRNLRV 478 (490)
Q Consensus 452 ~~--~v~~~~~s~~-~~~l~s~~~dg~v~i 478 (490)
.. ....++++|. ...|+.++.+|.|..
T Consensus 338 ~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 338 WLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred cceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 00 1135788874 355777766666543
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.83 E-value=3.3 Score=40.55 Aligned_cols=191 Identities=9% Similarity=0.078 Sum_probs=109.3
Q ss_pred CCCEEEEEEC-CCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEc--CCCcEEEEEcC-------CCcE---------
Q 011256 285 TNKYFVTASL-DNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFH--PDGLILGTGTS-------EALV--------- 345 (490)
Q Consensus 285 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~g~~-------dg~i--------- 345 (490)
||++++.-.. +.+|...++...++-..+..... ..+..+.|. |+..++++++. ||..
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~----~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y 216 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNV----QAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY 216 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC----SCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCC----cCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc
Confidence 5678888774 67889999999888776654422 567778876 67777777654 2221
Q ss_pred ---EEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCC--------------C--EEEEECCC-------C--c--
Q 011256 346 ---KIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD--------------G--VKLWDLRK-------L--K-- 395 (490)
Q Consensus 346 ---~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--------------~--i~iwd~~~-------~--~-- 395 (490)
...|..+.+...++.- .+....+...++|.|.++.+.+ . +.++++.. + +
T Consensus 217 ~~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~ 295 (638)
T 3sbq_A 217 TMYNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL 295 (638)
T ss_dssp EEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC
T ss_pred eEEEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE
Confidence 1123223322222211 1233344556677777665421 1 55555421 0 0
Q ss_pred ---ceeeeecCC-------------CCCCeeEEEEcCCCCEEEEEecC---eEEEEEeecCC---------cceEeeeec
Q 011256 396 ---NFRSFESSD-------------SETPTNSVDFDHSGSYLAVASAD---IRVYQVASVKA---------DWNCIKTFP 447 (490)
Q Consensus 396 ---~~~~~~~~~-------------~~~~i~~i~~s~~~~~l~~~~~d---i~v~~~~~~~~---------~~~~~~~~~ 447 (490)
.+..+.... .......+.++|||+++++++.- +.|+++..... .........
T Consensus 296 ~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 296 GDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp TTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 011111111 02345668899999999998775 99999853211 001111111
Q ss_pred CCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCCC
Q 011256 448 DLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPG 483 (490)
Q Consensus 448 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 483 (490)
. .-.....+|.++|....+--.|..|.-|++..
T Consensus 376 ~---GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 376 L---GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp C---CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred C---CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 1 33467899999995555566899999999853
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.78 E-value=2.6 Score=39.28 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=108.3
Q ss_pred CCeEEEEecCCCCEEEE--EeC-------------CCcEEEEeCCCC--cEEEEeccC------ccCEEEEEEe---eC-
Q 011256 188 PGIVSLDIHYSKDVIAT--GGV-------------DTNAVLFDRPSG--QIVTTLSGH------SKKVTSVKFV---TE- 240 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~--~~~-------------dg~i~iwd~~~~--~~~~~~~~h------~~~v~~l~~~---~~- 240 (490)
-.|..+...+.+.+-+. |-. --.|.+||+.++ +.++++.-. ...+..+.+. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 46788888877764432 211 125889999999 998877532 3457888887 22
Q ss_pred ---CCEEEEE-eCCCcEEEEeCCCCCccceeeee-----------ccc----ccceEEEEEecC----CCEEEEEECCC-
Q 011256 241 ---GDLFLTG-SADKTVRVWQGSEDGNYDCKHTL-----------KDH----TAEVQAVTVHAT----NKYFVTASLDN- 296 (490)
Q Consensus 241 ---~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-----------~~h----~~~v~~l~~~~~----~~~l~s~~~dg- 296 (490)
+.++..+ +..+-|.|+|+.++..++..... .+. ...|..|+++|+ ++.|.-....+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~ 246 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI 246 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence 2343333 34678999999887544433211 111 236788888887 56665554443
Q ss_pred eEEEEe---CCCCe---EEEEeecCCCCCCCCCceEEEEc-CCCcEEEEEcCCCcEEEEECCC-C---ceeeee--cCCC
Q 011256 297 TWCFYD---LSSGI---CLTQVSDAGTDGRPEGYTSAAFH-PDGLILGTGTSEALVKIWDVKS-Q---ANVAKF--DGHV 363 (490)
Q Consensus 297 ~i~iwd---~~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~-~---~~~~~~--~~~~ 363 (490)
.+.-.. ++... .+..+. ..+....-..+++. .+|.++++--....|..|+..+ . .....+ ...-
T Consensus 247 ~ly~V~T~~L~~~~~~~~v~~~G---~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l 323 (381)
T 3q6k_A 247 KVYSVNTKELKQKGGKLNPELLG---NRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRF 323 (381)
T ss_dssp EEEEEEHHHHSSTTCCCCCEEEE---ECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTC
T ss_pred cEEEEEHHHhhCcchhhceEEee---ecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCc
Confidence 232222 11111 111111 11111223456675 6788888888888999999875 1 112222 1122
Q ss_pred CCeEEEEEcCCCCEEEEEe
Q 011256 364 GAVTAISFSENGYYLATAA 382 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~ 382 (490)
.....+.+.++|.+.+..+
T Consensus 324 ~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 324 VFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CSEEEEEECTTSCEEEEEC
T ss_pred cccCeEEECCCCeEEEEEC
Confidence 3567788877776555543
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.58 E-value=1.2 Score=48.76 Aligned_cols=177 Identities=8% Similarity=0.044 Sum_probs=102.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CcEEEEeccC----ccCEEEEEEeeCCCEEEEEe-------CCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPS-GQIVTTLSGH----SKKVTSVKFVTEGDLFLTGS-------ADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s-------~dg~i~iw 256 (490)
+|..=.|-... .|+..+ +..|+-|++.. ..+.+.+.-| ...|..-..+++.++++..| -.|.+.+|
T Consensus 107 ~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 45555555333 333332 35799999864 2333344333 35577777788888766443 35788999
Q ss_pred eCCCCCccceeeeecccccceEEEEEe--cC-CCEEEEEEC---CCeEEEEeCCCC---eEEE-----EeecCCCCCCCC
Q 011256 257 QGSEDGNYDCKHTLKDHTAEVQAVTVH--AT-NKYFVTASL---DNTWCFYDLSSG---ICLT-----QVSDAGTDGRPE 322 (490)
Q Consensus 257 d~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~~~l~s~~~---dg~i~iwd~~~~---~~~~-----~~~~~~~~~~~~ 322 (490)
+.+. ...+.+.||.+.-..+... +. ...|+.+.. .+.++|.++... .... .+... ......
T Consensus 185 S~er----~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~-~~~~~D 259 (1630)
T 1xi4_A 185 SVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQND 259 (1630)
T ss_pred eccc----ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC-cccccC
Confidence 8876 4455566776654444432 11 123333322 368888887543 1110 00000 111224
Q ss_pred CceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEc
Q 011256 323 GYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 323 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 372 (490)
...++.+++.-.++..-+.-|.|.+||+.++.++..-.-...+|...+.+
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 45678888887888888999999999999998876655444455444433
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.30 E-value=3.6 Score=38.69 Aligned_cols=264 Identities=9% Similarity=0.054 Sum_probs=126.1
Q ss_pred CCeEEEEecC-CCCEEEEEeCCC----cEEEEeCCCCcEEEEecc--------------CccCEEEEEEeeC--CCEEEE
Q 011256 188 PGIVSLDIHY-SKDVIATGGVDT----NAVLFDRPSGQIVTTLSG--------------HSKKVTSVKFVTE--GDLFLT 246 (490)
Q Consensus 188 ~~I~~~~~~~-~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~--------------h~~~v~~l~~~~~--~~~l~s 246 (490)
..|.+|.+.| +...|.+++..| .|...+ ..++.-..+.. ....|.++++.|. ...|..
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4699999998 333344444444 344332 22332222211 1125778888872 455666
Q ss_pred EeCCCcEEEEeCCCCCccceeeeecc----------------cccceEEEEEecC-CCEEEEEECCCeEEEEeCCCCeEE
Q 011256 247 GSADKTVRVWQGSEDGNYDCKHTLKD----------------HTAEVQAVTVHAT-NKYFVTASLDNTWCFYDLSSGICL 309 (490)
Q Consensus 247 ~s~dg~i~iwd~~~~~~~~~~~~~~~----------------h~~~v~~l~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 309 (490)
++..+.|...+ +.+..+..+..+.. ....|.+|.++|. ...++.+..++.|...+ ..++..
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW 211 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW 211 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence 66556554442 22233333321110 1235789999884 34455555444444432 222222
Q ss_pred EEeecCCCCC--------CCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeecC--CC---CCeEEEEEcCC-
Q 011256 310 TQVSDAGTDG--------RPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFDG--HV---GAVTAISFSEN- 374 (490)
Q Consensus 310 ~~~~~~~~~~--------~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~---~~i~~l~~s~~- 374 (490)
..+....... ....+.++.++|+ ...|.+++..+ |...+- .++.-..+.. .. ..+.++.++|.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCC
Confidence 2221100000 0124788999985 45666666544 544442 2332222221 11 34577888763
Q ss_pred CCEEEEEeC-----------CC-EEEEECCCC-cceeeeec-CCCC-----CCeeEEEEcCCC-CEEEEEecCeEEEEEe
Q 011256 375 GYYLATAAH-----------DG-VKLWDLRKL-KNFRSFES-SDSE-----TPTNSVDFDHSG-SYLAVASADIRVYQVA 434 (490)
Q Consensus 375 ~~~l~~~~~-----------d~-i~iwd~~~~-~~~~~~~~-~~~~-----~~i~~i~~s~~~-~~l~~~~~di~v~~~~ 434 (490)
...|.++.. ++ ..||....+ +....+.. .... .....++++|.. ..|++++.+..||.-.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~ 369 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA 369 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC
Confidence 333444321 22 455654442 32222221 1100 012357888753 4566676666677766
Q ss_pred ecCCcceEeeeecCCCCCcceEEEEEc
Q 011256 435 SVKADWNCIKTFPDLSGTGKATCVKFG 461 (490)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~v~~~~~s 461 (490)
.....|..+..- ...+.++.|.
T Consensus 370 D~G~tW~~~~~~-----lp~~~~v~~~ 391 (394)
T 3b7f_A 370 DEGEHWQCIASH-----LPHIYAVQSA 391 (394)
T ss_dssp STTSBCEEEECS-----CSCEEEEEEE
T ss_pred CCCCCceEcccC-----CCCeeEEEEe
Confidence 666677766531 2246677663
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=93.49 E-value=7.7 Score=39.75 Aligned_cols=229 Identities=7% Similarity=0.018 Sum_probs=117.5
Q ss_pred ecCCCCEEEEEe-----CCCcEEEEeCCCCcEEE-EeccCcc--------CEEEEEEeeCCCEEEEE----------eCC
Q 011256 195 IHYSKDVIATGG-----VDTNAVLFDRPSGQIVT-TLSGHSK--------KVTSVKFVTEGDLFLTG----------SAD 250 (490)
Q Consensus 195 ~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~-~~~~h~~--------~v~~l~~~~~~~~l~s~----------s~d 250 (490)
++|++++++.+- .-..++++|+.+++.+. .+. ... ....++|..+..++++. +.-
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 788988776542 22368999999987653 111 000 11345887444444432 112
Q ss_pred CcEEEEeCCCCCccceeeeecccccce-EEEEEecCCC-----EEEEEECC---CeEEEEeCCC--CeEEEEeecCCCCC
Q 011256 251 KTVRVWQGSEDGNYDCKHTLKDHTAEV-QAVTVHATNK-----YFVTASLD---NTWCFYDLSS--GICLTQVSDAGTDG 319 (490)
Q Consensus 251 g~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~-----~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~ 319 (490)
..|+.|.+.+... .-...+.+....+ .....++++. .+++.+.+ ..+.+.+... +.. ..+...
T Consensus 216 ~~v~~~~~Gt~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~---- 289 (711)
T 4hvt_A 216 NSLYIWKRGESIE-KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMP---- 289 (711)
T ss_dssp CEEEEEETTSCGG-GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSC----
T ss_pred CEEEEEECCCChH-HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecC----
Confidence 4688888766421 2222333322232 2344455665 24444422 3456666553 332 222211
Q ss_pred CCCCceEEEEcCCCcEEEEE----------cCCCcEEEEECCCCc-------eeee-ecC-CCCCeEEEEEcCCCCEEEE
Q 011256 320 RPEGYTSAAFHPDGLILGTG----------TSEALVKIWDVKSQA-------NVAK-FDG-HVGAVTAISFSENGYYLAT 380 (490)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~g----------~~dg~i~iwd~~~~~-------~~~~-~~~-~~~~i~~l~~s~~~~~l~~ 380 (490)
.. ..+..+.++.+++.. ...+.|...|+.++. .... +.. ....+..+.+..+ .++++
T Consensus 290 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 290 --SD-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp --TT-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred --Cc-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 11 122334456555532 246779999987642 1222 322 3346788888866 56666
Q ss_pred EeCCC---EEEEECCCCc-ceee-eecCCCCCCeeEEEEcCCCCEE-EEEecC---eEEEEEee
Q 011256 381 AAHDG---VKLWDLRKLK-NFRS-FESSDSETPTNSVDFDHSGSYL-AVASAD---IRVYQVAS 435 (490)
Q Consensus 381 ~~~d~---i~iwd~~~~~-~~~~-~~~~~~~~~i~~i~~s~~~~~l-~~~~~d---i~v~~~~~ 435 (490)
...++ |.++|+.++. .... +.... ...+....+++++..+ ++.++. -.+|.++.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 66665 7888876654 2233 33321 2446666666766544 443333 66666643
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.38 E-value=8.2 Score=37.18 Aligned_cols=109 Identities=11% Similarity=0.129 Sum_probs=61.7
Q ss_pred cCEEEEEEeeCCC-EEEEEeCCCcEEEEeCCCCCccceeeeec---------ccccceEEEEEecC----CCEEEEEEC-
Q 011256 230 KKVTSVKFVTEGD-LFLTGSADKTVRVWQGSEDGNYDCKHTLK---------DHTAEVQAVTVHAT----NKYFVTASL- 294 (490)
Q Consensus 230 ~~v~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~~~~----~~~l~s~~~- 294 (490)
..-+.|+|.|+|. .|+++...|.|++++.........+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 45556788999999754321111111111 11456889999996 333333222
Q ss_pred -C----------CeEEEEeCCC----------CeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcC
Q 011256 295 -D----------NTWCFYDLSS----------GICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTS 341 (490)
Q Consensus 295 -d----------g~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 341 (490)
+ ..|.-|.+.. .+.+..+... ... .....|.|.|||.++++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~-~~~--H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL-HRK--HLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES-SSS--SCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC-CCc--ccCCcEeECCCCcEEEEeCC
Confidence 1 1444465542 2233333211 122 34678999999987776554
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.29 E-value=8.5 Score=37.10 Aligned_cols=244 Identities=9% Similarity=0.082 Sum_probs=121.0
Q ss_pred CeEEEEecCCCC-EEEEEeCCCcEEEEeCCCC---cEEEEec---------cCccCEEEEEEeeC----CCEEEEEeC--
Q 011256 189 GIVSLDIHYSKD-VIATGGVDTNAVLFDRPSG---QIVTTLS---------GHSKKVTSVKFVTE----GDLFLTGSA-- 249 (490)
Q Consensus 189 ~I~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~---------~h~~~v~~l~~~~~----~~~l~s~s~-- 249 (490)
.-..|+|.|+|. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 347899999996 4555677899999975322 1222221 11456889999985 444333222
Q ss_pred C----------CcEEEEeCCCC--C-----ccceeeeec--ccccceEEEEEecCCCEEEEEECCC--------------
Q 011256 250 D----------KTVRVWQGSED--G-----NYDCKHTLK--DHTAEVQAVTVHATNKYFVTASLDN-------------- 296 (490)
Q Consensus 250 d----------g~i~iwd~~~~--~-----~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg-------------- 296 (490)
+ ..|.-|.+... . ..+.+..+. ........|.|.|+|.++++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 13444665431 1 112222222 1122457899999998777766543
Q ss_pred ---eEEEEeCCCCeE--EEEeec-CC------------CCCCCCCceEEEEcCC-----Cc-EEEEEcCCC----cEEEE
Q 011256 297 ---TWCFYDLSSGIC--LTQVSD-AG------------TDGRPEGYTSAAFHPD-----GL-ILGTGTSEA----LVKIW 348 (490)
Q Consensus 297 ---~i~iwd~~~~~~--~~~~~~-~~------------~~~~~~~v~~~~~~~~-----~~-~l~~g~~dg----~i~iw 348 (490)
.|.-.|...... ...+.. .. ..+| .....++|+|. |. .++.+...| .-.|.
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence 233333322100 000000 00 0011 23456889986 33 344443212 12333
Q ss_pred ECCCC------ceeeeecCCC-CCeEEEEEcCC-------CCEEEEEeCCC-EEEEECCCCcce---eee-ec------C
Q 011256 349 DVKSQ------ANVAKFDGHV-GAVTAISFSEN-------GYYLATAAHDG-VKLWDLRKLKNF---RSF-ES------S 403 (490)
Q Consensus 349 d~~~~------~~~~~~~~~~-~~i~~l~~s~~-------~~~l~~~~~d~-i~iwd~~~~~~~---~~~-~~------~ 403 (490)
.+..+ .++..+..+. ..+..+.|... |.+|+..- .+ |....+...... ..+ .. .
T Consensus 254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~-~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 332 (463)
T 2wg3_C 254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDR-NGNFLTLQQSPVTKQWQEKPLCLGTSGSCRG 332 (463)
T ss_dssp EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEET-TSCEEEEEC-----CCEEEEECEEETTSSCS
T ss_pred eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecC-CCcEEEEEeCCCCceeeEEEeecCCcccccc
Confidence 33332 2344444331 46788888542 34555443 35 655555433211 111 00 1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe-------cCeEEEEEe
Q 011256 404 DSETPTNSVDFDHSGSYLAVAS-------ADIRVYQVA 434 (490)
Q Consensus 404 ~~~~~i~~i~~s~~~~~l~~~~-------~di~v~~~~ 434 (490)
.....+..+.+.|+|.++++.. .+.+||.+.
T Consensus 333 ~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 333 YFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp CCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred cccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 1135689999999999888776 348999985
No 355
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=90.74 E-value=0.27 Score=24.54 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.3
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 43 EWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 43 Ewda~~le~~~l~~~l~~~~~els 66 (490)
|-||+-.||..|++.+..++|..+
T Consensus 1 eidalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHH
Confidence 568999999999999988888765
No 356
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.88 E-value=1.6 Score=34.05 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=51.2
Q ss_pred HHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 011256 36 MLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 36 ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 101 (490)
-|-.+|.+.+.+.-+.-++.+.+..++.||..+--+.+.+.+-+.++.++-+++.+.+.+++..+.
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777777777888888888888888888888888888888888888876553
No 357
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.31 E-value=1.9 Score=28.94 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=44.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 011256 46 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 100 (490)
Q Consensus 46 a~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 100 (490)
++-.+|++|+.++..+.++|.++..+++....-+.++..--|-.-.+|.++...+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667899999999999999999999999998888888777766656665555443
No 358
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.32 E-value=2.3 Score=29.18 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=44.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 011256 45 DGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 100 (490)
Q Consensus 45 da~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 100 (490)
.++-.+|++|+.++..+.++|.++..+++.+..-+.++..--|-.-.+|.++...+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35567899999999999999999999999998888888777766555555555443
No 359
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=88.25 E-value=1.9 Score=30.73 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHHHHH-HhhhcchhhHHHHHHhhhHHHHHHHHHHh
Q 011256 39 MFQNEWDGLMLSNFALEQQLHTARQELSH-ALYQHDAACRVIARLKKERDEARSLLAQS 96 (490)
Q Consensus 39 ~~q~Ewda~~le~~~l~~~l~~~~~els~-aly~~daa~rv~arl~kerd~~r~~l~~~ 96 (490)
-.|.||+.|--+.-.|..++..+..+|+. .+|+.|.+ .++.+.++.+++..+|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~--~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHE--QTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999987 57988875 3556667776666666554
No 360
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=88.05 E-value=2.7 Score=25.96 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=32.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 011256 46 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 100 (490)
Q Consensus 46 a~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 100 (490)
+++-..|.||.|++.++||... ..+...|...+|.+|+.+-..+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~-----------m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKK-----------MKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999998753 4566677777888887765543
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.85 E-value=14 Score=39.42 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=34.4
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 011256 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 314 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 314 (490)
.+.++...++..++++.+.|+++++|++.++.++.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567788888889999999999999999999999887654
No 362
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.98 E-value=18 Score=32.05 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=104.2
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceee
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKH 268 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 268 (490)
.|..++.... ..++. . ||.|+.|-......+..-......|..++...+. .++. . ||.|..|-....+..-...
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 4555554432 22232 4 8888888644321111011122356666654322 2333 4 8999999765543221111
Q ss_pred eecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEE
Q 011256 269 TLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIW 348 (490)
Q Consensus 269 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 348 (490)
.-...|..++.. ..+.+... ||.|+.|-......+.... .....|..++...+..++ . . ||.|+.|
T Consensus 99 ---~~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~-----~~~~~i~~i~~G~~~~~~-l-~-~G~v~~w 164 (282)
T 3qhy_B 99 ---EARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPA-----EAQSGVTALDGGVYTALA-V-K-NGGVIAW 164 (282)
T ss_dssp ---GGSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCG-----GGGSSEEEEEECSSEEEE-E-E-TTEEEEE
T ss_pred ---ccCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCc-----cCCCCeEEEEcccCEEEE-E-E-CCEEEEe
Confidence 112467777765 33444445 9999999765432211100 011346666554433322 2 3 6899999
Q ss_pred ECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 349 DVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 349 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
-......+..-......|..++...+. .++. . ++ |+.|-......+-. ... ....|..++......++++ +
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al-~-~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~h~~al~---~ 236 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL-K-DGKVIAWGDNRYKQTTV-PTE-ALSGVSAIASGEWYSLALK---N 236 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC-CGG-GGSSCCEEEECSSCEEEEE---T
T ss_pred cCCCCCCCCCceecCCCeEEEEecCCE-EEEE-E-CCeEEEEECCCCCCCCC-Ccc-cCCCceEEEcCCCEEEEEE---C
Confidence 765422211111113467777765432 3333 3 55 99997654322211 100 1234666665544333333 5
Q ss_pred eEEEEE
Q 011256 428 IRVYQV 433 (490)
Q Consensus 428 i~v~~~ 433 (490)
..+|-+
T Consensus 237 g~v~~w 242 (282)
T 3qhy_B 237 GKVIAW 242 (282)
T ss_dssp TEEEEE
T ss_pred CEEEEe
Confidence 455554
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.84 E-value=22 Score=33.02 Aligned_cols=172 Identities=10% Similarity=0.088 Sum_probs=96.8
Q ss_pred eEEEEeCCCC--eEEEEeecCCC-CCCCCCceEEEEc---CC----CcEEEEEc-CCCcEEEEECCCCceeeeec-----
Q 011256 297 TWCFYDLSSG--ICLTQVSDAGT-DGRPEGYTSAAFH---PD----GLILGTGT-SEALVKIWDVKSQANVAKFD----- 360 (490)
Q Consensus 297 ~i~iwd~~~~--~~~~~~~~~~~-~~~~~~v~~~~~~---~~----~~~l~~g~-~dg~i~iwd~~~~~~~~~~~----- 360 (490)
.|.+||+.++ +.++.+..... ......+..+.+. |+ +.++.... ..+.|.++|+.+++.-+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6778899998 88877764311 1122457778877 22 34444443 46789999999886544331
Q ss_pred ---------CC----CCCeEEEEEcCC----CCEEEEEeCCCEEEEECC-----CCcc---eeeeecCCCCCCeeEEEEc
Q 011256 361 ---------GH----VGAVTAISFSEN----GYYLATAAHDGVKLWDLR-----KLKN---FRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 361 ---------~~----~~~i~~l~~s~~----~~~l~~~~~d~i~iwd~~-----~~~~---~~~~~~~~~~~~i~~i~~s 415 (490)
+. ...|..|+++|+ +++|.-....+-++|.+. +... +..+...........++++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 10 247889999998 788888877776666543 2221 2222221101233456676
Q ss_pred -CCCCEEEEEecC--eEEEEEee-cC--CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEe
Q 011256 416 -HSGSYLAVASAD--IRVYQVAS-VK--ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGS 471 (490)
Q Consensus 416 -~~~~~l~~~~~d--i~v~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 471 (490)
.+|.++++--.. |..|+... .. .+...+..-. .-..+..+.+.++|.+.+..+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~---~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS---RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT---TCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC---CccccCeEEECCCCeEEEEEC
Confidence 456544444444 77777532 11 1122222211 234678888888886555543
No 364
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=83.87 E-value=25 Score=31.90 Aligned_cols=238 Identities=12% Similarity=0.123 Sum_probs=118.8
Q ss_pred eCCCEEEEEeCCCcEEEEeCCCCCc-cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC---CC------CeE
Q 011256 239 TEGDLFLTGSADKTVRVWQGSEDGN-YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL---SS------GIC 308 (490)
Q Consensus 239 ~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~---~~------~~~ 308 (490)
|+..++++.+.+|.|+--.+..-.. ......+. -.+.+..+........++..+..|.++-+.. .. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 4667788999999998765431000 00111222 2345555555556778888888898766654 22 221
Q ss_pred EEEeecCCCCCCCCCceEEE-EcC--CCcEEEEEcCCCcEEEEECCC--------CceeeeecCCCCCeEEEEEcCCCCE
Q 011256 309 LTQVSDAGTDGRPEGYTSAA-FHP--DGLILGTGTSEALVKIWDVKS--------QANVAKFDGHVGAVTAISFSENGYY 377 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~v~~~~-~~~--~~~~l~~g~~dg~i~iwd~~~--------~~~~~~~~~~~~~i~~l~~s~~~~~ 377 (490)
+..+. .......|.++. +.. ++.+++..+.+|.++...+.. +.....+... +.+..+........
T Consensus 82 i~~~i---~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 82 IANII---PIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNE 157 (323)
T ss_dssp GGGTS---CCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSE
T ss_pred hhhcc---CCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCE
Confidence 11111 011123455543 332 256788889999999887642 2222233322 45555555555556
Q ss_pred EEEEeCCC-EEEEECCCCc-------ceeeeecCCCCCCeeEEEEcCCCC-EEEEEecC--eEEEEEeecC---CcceEe
Q 011256 378 LATAAHDG-VKLWDLRKLK-------NFRSFESSDSETPTNSVDFDHSGS-YLAVASAD--IRVYQVASVK---ADWNCI 443 (490)
Q Consensus 378 l~~~~~d~-i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~d--i~v~~~~~~~---~~~~~~ 443 (490)
++..+.+| +..|+..... -...+.... ...|.++..-+++. .+++.+.. ++...+.... ....-+
T Consensus 158 i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCE
T ss_pred EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCE
Confidence 77777777 6666654321 122222222 34455554434444 56666665 4444443211 111111
Q ss_pred eeecCCC-CCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 444 KTFPDLS-GTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 444 ~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
..+.... ....+..+....++..++..+..|.+..+.+.
T Consensus 237 ~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 237 VILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp ECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 1121111 12245543333334556666778877665554
No 365
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=81.80 E-value=7.4 Score=31.58 Aligned_cols=49 Identities=24% Similarity=0.208 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhh
Q 011256 50 SNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER 98 (490)
Q Consensus 50 e~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~ 98 (490)
+...||+++...++||...+.....-...|..+.+|..++|..+.....
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999776665555566677777777777766655433
No 366
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.55 E-value=28 Score=30.80 Aligned_cols=221 Identities=13% Similarity=0.042 Sum_probs=104.6
Q ss_pred CEEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEE
Q 011256 231 KVTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLT 310 (490)
Q Consensus 231 ~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 310 (490)
.|..++... ...+.-. ||.|..|-....+..-.. ......|..++... .+.+... ||.|+.|-......+.
T Consensus 25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~--~hs~~l~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGN--YHSLALK-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECS--SEEEEEE-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCC--CEEEEEE-CCEEEEeeCCCCCCCC
Confidence 466666532 2222235 899999976554322111 11223566676542 3333334 8999999865432211
Q ss_pred EeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEE
Q 011256 311 QVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLW 389 (490)
Q Consensus 311 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iw 389 (490)
.... -...|..++...+- .+.-+ +|.|+.|-....-.+..-......|..++...+ +.+.-. ++ |..|
T Consensus 96 ~P~~-----~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~w 164 (282)
T 3qhy_B 96 VPAE-----ARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAW 164 (282)
T ss_dssp CCGG-----GSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEE
T ss_pred CCcc-----cCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEe
Confidence 1100 01356666655443 33334 899999976542221111112345777766443 222233 45 8888
Q ss_pred ECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCCCeEEE
Q 011256 390 DLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAV 469 (490)
Q Consensus 390 d~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 469 (490)
-......+.. +.. ....|..++....... +. .+..||-+-.... ...-.... ....|..++...... ++.
T Consensus 165 G~n~~gqlg~-p~~-~~~~v~~i~~G~~hs~-al--~~G~v~~wG~n~~-gqlg~p~~---~~~~v~~i~~G~~h~-~al 234 (282)
T 3qhy_B 165 GDNYFGQTTV-PAE-AQSGVDDVAGGIFHSL-AL--KDGKVIAWGDNRY-KQTTVPTE---ALSGVSAIASGEWYS-LAL 234 (282)
T ss_dssp ECCTTSTTSC-CGG-GGSSEEEEEECSSEEE-EE--ETTEEEEEECCTT-STTCCCGG---GGSSCCEEEECSSCE-EEE
T ss_pred cCCCCCCCCC-cee-cCCCeEEEEecCCEEE-EE--ECCeEEEEECCCC-CCCCCCcc---cCCCceEEEcCCCEE-EEE
Confidence 7654322211 100 0234666655433222 22 3544444422111 11100001 123566776654432 333
Q ss_pred EeCCCcEEEecCCC
Q 011256 470 GSMDRNLRVFGLPG 483 (490)
Q Consensus 470 ~~~dg~v~iw~~~~ 483 (490)
. ||.|+.|-...
T Consensus 235 -~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 235 -K-NGKVIAWGSSR 246 (282)
T ss_dssp -E-TTEEEEESTTC
T ss_pred -E-CCEEEEecCCC
Confidence 3 99999997654
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.95 E-value=31 Score=30.39 Aligned_cols=200 Identities=10% Similarity=0.008 Sum_probs=113.3
Q ss_pred CCCCeEEEEecCCCCEEEEEeCCCcEEEE---eCCCCcEEEEeccCccCEEEEEEee--CCCEEEEEeCCCcEEEEeCCC
Q 011256 186 SKPGIVSLDIHYSKDVIATGGVDTNAVLF---DRPSGQIVTTLSGHSKKVTSVKFVT--EGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 186 h~~~I~~~~~~~~~~~l~~~~~dg~i~iw---d~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~s~dg~i~iwd~~~ 260 (490)
..+.+..+......+.|+.-+++|.++-- ++..+.....+. ....|..+.. + +..+++..+.+|.++...+..
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence 44567777666666677777788887653 333221111133 3455666644 4 467899999999999987644
Q ss_pred CC---ccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCC-------eEEEEeecCCCCCCCCCceEEEEc
Q 011256 261 DG---NYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSG-------ICLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 261 ~~---~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
-. .-.....+. -.+.+..+........++..+..|.+..+....- .-+..+. . .....|..+...
T Consensus 100 ~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~---L-~~~d~vv~~~~~ 174 (276)
T 3no0_A 100 FEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK---L-EKNDETSGLRIW 174 (276)
T ss_dssp TTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC---C-CTTCCEEEEEEE
T ss_pred hhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc---c-CCCCEEEEEEEe
Confidence 21 001112222 2345666666556678889999999888875321 1111111 1 112456666555
Q ss_pred CCCcEEEEEcCCCcEEEEECCC-------CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEE--EECCC
Q 011256 331 PDGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKL--WDLRK 393 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~i--wd~~~ 393 (490)
+++..++..+..|.++...+.. ++-+..+ ...+.+..+....++..++..+.+| +.. ++...
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 5666788888999998887632 2223333 2334455444333334555556665 555 65543
No 368
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.71 E-value=13 Score=26.79 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=56.0
Q ss_pred HhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcCc
Q 011256 38 GMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMP 102 (490)
Q Consensus 38 ~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~~ 102 (490)
+.|-||=-|++.+.-.|+-.|+...+.+++.-.+..--+|-..++.+.-+.+...+..++..+..
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999888888888999988888888888888887776643
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=79.59 E-value=61 Score=33.57 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=77.6
Q ss_pred CCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCcEEEEeccC-------ccCEEEEEEeeC-CCEEEEEeCCCc----E
Q 011256 187 KPGIVSLDIHYS-KDVIATGGVDTNAVLFDRPSGQIVTTLSGH-------SKKVTSVKFVTE-GDLFLTGSADKT----V 253 (490)
Q Consensus 187 ~~~I~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~-~~~l~s~s~dg~----i 253 (490)
.+.|.+|+++|. ...+++++..+.|...+ ..|+.-..+..+ ...|.+|++.|. .+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 358999999996 45677777777766554 234444444332 246999999884 344444432211 3
Q ss_pred EEEe-CCCCCccceeeee-c--c---cccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecCCC-CCCCCCc
Q 011256 254 RVWQ-GSEDGNYDCKHTL-K--D---HTAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDAGT-DGRPEGY 324 (490)
Q Consensus 254 ~iwd-~~~~~~~~~~~~~-~--~---h~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v 324 (490)
.||. .+.+..+..+..- . . ....+..++++|.. +.++.+...+.|. .....|+.-..+..... ......+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 3443 3333334433211 0 0 01135678888754 4555555344332 22233333333221100 0111457
Q ss_pred eEEEEcCC-CcEEEEEcCC
Q 011256 325 TSAAFHPD-GLILGTGTSE 342 (490)
Q Consensus 325 ~~~~~~~~-~~~l~~g~~d 342 (490)
..+.++|. +..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 88999884 4455555544
No 370
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=79.42 E-value=3.1 Score=21.29 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=19.4
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 42 NEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 42 ~Ewda~~le~~~l~~~l~~~~~els 66 (490)
.||.|+-..--.|+..|+.+.+.|.
T Consensus 1 ~ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 1 XEWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899998888888888888777664
No 371
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=79.04 E-value=41 Score=31.17 Aligned_cols=150 Identities=12% Similarity=0.053 Sum_probs=84.0
Q ss_pred eeCCCEEEEEeCCCcEEEEeCCC------CCccceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC---CC---
Q 011256 238 VTEGDLFLTGSADKTVRVWQGSE------DGNYDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL---SS--- 305 (490)
Q Consensus 238 ~~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~---~~--- 305 (490)
-|+..++++.+.+|.|+--.+.. ++.-.....++ ..+.+..+........++..+..|.++.+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999998754321 11001122233 3456666666666777888888888776653 22
Q ss_pred ---CeEEEEeecCCCCCCCCCceEEEEcC---CCcEEEEEcCCCcEEEEECCC-------CceeeeecCCCCCeEEEEEc
Q 011256 306 ---GICLTQVSDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVGAVTAISFS 372 (490)
Q Consensus 306 ---~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s 372 (490)
|..+..+.. . .....|.++.... ++.+|+.++..|.++...+.. |.....+.. .+.+..+...
T Consensus 83 ~a~G~~i~~ll~--L-~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 83 NARGRPIINWIP--L-ESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp TSCCEEGGGSCC--C-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEE
T ss_pred ccCCcCHhhccC--C-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEe
Confidence 222111110 1 1124455554332 456888899999999887632 222223332 3445555554
Q ss_pred CCCCEEEEEeCCC-EEEEECC
Q 011256 373 ENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 373 ~~~~~l~~~~~d~-i~iwd~~ 392 (490)
.....++..+..| +..|+..
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGG
T ss_pred CCCceEEEEeCCCeEEEEEcc
Confidence 4555666677776 5556543
No 372
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=78.53 E-value=8.1 Score=27.84 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=31.6
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALY 70 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly 70 (490)
.-+..|..|-|.+-.|+-.||+..+.+.-+|.+..-
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l 47 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468889999999999999999999999999988444
No 373
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.41 E-value=5.9 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHH
Q 011256 56 QQLHTARQELSHALYQHDAACRVIARLKKERDEA 89 (490)
Q Consensus 56 ~~l~~~~~els~aly~~daa~rv~arl~kerd~~ 89 (490)
+.++.++.|+...--+...+..-..++.+|-+++
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444554444444444444444444444444
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.34 E-value=42 Score=30.43 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=102.8
Q ss_pred CCEEEEEeCCCcEEEEeCCC-------CcEEEEec-cCccCEEEEEEeeCCCEEEEEeCCCcEEEE---eCCCCC---cc
Q 011256 199 KDVIATGGVDTNAVLFDRPS-------GQIVTTLS-GHSKKVTSVKFVTEGDLFLTGSADKTVRVW---QGSEDG---NY 264 (490)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw---d~~~~~---~~ 264 (490)
...+++.+.+|.|+--.+.+ ++-+..+. .....+..+......+.|+.-+..|.+.-. ++...+ .-
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34677778888887654221 11111111 123445555555566666666777876544 333221 00
Q ss_pred cee---eeecccccceEEEEEec---CCCEEEEEECCCeEEEEeCCCCeEEEE--eecCCCCCCCCCceEEEEcCCCcEE
Q 011256 265 DCK---HTLKDHTAEVQAVTVHA---TNKYFVTASLDNTWCFYDLSSGICLTQ--VSDAGTDGRPEGYTSAAFHPDGLIL 336 (490)
Q Consensus 265 ~~~---~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 336 (490)
..+ ..+. ....|.++...+ +..+++.++.+|.++...+........ ........ ...+..+........+
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDL 160 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEE
Confidence 111 1121 234566665544 478999999999999987654221110 00000111 2445555444455567
Q ss_pred EEEcCCCcEEEEECC--CC---------ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC
Q 011256 337 GTGTSEALVKIWDVK--SQ---------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 337 ~~g~~dg~i~iwd~~--~~---------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 393 (490)
+..+..|.+..+... .- .....+. ....|.++...+++.+++..+..| ++.-.+..
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 777888988888766 21 1111222 234677776666667888888888 77766543
No 375
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=76.62 E-value=6.3 Score=21.86 Aligned_cols=28 Identities=39% Similarity=0.474 Sum_probs=21.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHH
Q 011256 49 LSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEAR 90 (490)
Q Consensus 49 le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r 90 (490)
.||-.|.+.+++...| ||+|.+|-++++
T Consensus 7 ~ENekLhk~ie~Kdee--------------Ia~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNE--------------IARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHhhHHHH
Confidence 5788888888886666 678888877654
No 376
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=75.66 E-value=75 Score=32.45 Aligned_cols=230 Identities=10% Similarity=0.061 Sum_probs=108.9
Q ss_pred EeeCCCEEEEE-eCC----CcEEEEeCCCCCccceee-eec-cccc------ceEEEEEecCCCEEEEEE----------
Q 011256 237 FVTEGDLFLTG-SAD----KTVRVWQGSEDGNYDCKH-TLK-DHTA------EVQAVTVHATNKYFVTAS---------- 293 (490)
Q Consensus 237 ~~~~~~~l~s~-s~d----g~i~iwd~~~~~~~~~~~-~~~-~h~~------~v~~l~~~~~~~~l~s~~---------- 293 (490)
++|++++++.+ |.. ..++++|+.++. .+. .+. .-.. ....++|..++.++++..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~---~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKD---FVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSL 213 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTE---ECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCC---cCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCC
Confidence 68888865543 332 368999998862 221 111 0000 113447764444444321
Q ss_pred CCCeEEEEeCCCCe--EEEEeecCCCCCCCCCceEEEEcCCCc-----EEEEEc---CCCcEEEEECCC--CceeeeecC
Q 011256 294 LDNTWCFYDLSSGI--CLTQVSDAGTDGRPEGYTSAAFHPDGL-----ILGTGT---SEALVKIWDVKS--QANVAKFDG 361 (490)
Q Consensus 294 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~g~---~dg~i~iwd~~~--~~~~~~~~~ 361 (490)
....|+.|.+.+.. -...+... . .........++++. .+++.+ ....+++.|... ++. ..+..
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVP-K---EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECC-T---TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CCCEEEEEECCCChHHCeEEeccC-C---CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 12568888876653 22223221 1 12233455666665 244332 224566667653 332 22322
Q ss_pred CCCCeEEEEEcCCCCEEEEEe----------CCC-EEEEECCCCc-------ceeeeecCCCCCCeeEEEEcCCCCEEEE
Q 011256 362 HVGAVTAISFSENGYYLATAA----------HDG-VKLWDLRKLK-------NFRSFESSDSETPTNSVDFDHSGSYLAV 423 (490)
Q Consensus 362 ~~~~i~~l~~s~~~~~l~~~~----------~d~-i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s~~~~~l~~ 423 (490)
.... .+..+.++.+++... ..+ |.+.|+..+. ....+-.+.....+..+.+..+ .++++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 123344555555321 234 8899987642 2233233333556788888865 45555
Q ss_pred EecC----eEEEEEeecCCcceEe--eeecCCCCCcceEEEEEcCCCCeE-EEEe---CCCcEEEecCC
Q 011256 424 ASAD----IRVYQVASVKADWNCI--KTFPDLSGTGKATCVKFGPDAKYI-AVGS---MDRNLRVFGLP 482 (490)
Q Consensus 424 ~~~d----i~v~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l-~s~~---~dg~v~iw~~~ 482 (490)
...+ +.++++.. ..+... ..+.. .+.+....+++++..+ ++.+ .-+.+..+++.
T Consensus 366 ~~~~~~~~l~~~~~~~--g~~~~~~~i~lp~---~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLEN--EQWTKPVVLKLPY---QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEET--TEECCCEEECCCS---TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCC--CceEEEeccCCCC---CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5555 44554422 211111 11221 3456666666766544 3333 23566666664
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=75.24 E-value=78 Score=32.46 Aligned_cols=239 Identities=12% Similarity=0.073 Sum_probs=113.1
Q ss_pred CEEEEEEeeCC-CEEEEEeCCCcEEEEeCCCCCccceeeeecc----cccceEEEEEecCC-CEEEEEECC-------Ce
Q 011256 231 KVTSVKFVTEG-DLFLTGSADKTVRVWQGSEDGNYDCKHTLKD----HTAEVQAVTVHATN-KYFVTASLD-------NT 297 (490)
Q Consensus 231 ~v~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~-~~l~s~~~d-------g~ 297 (490)
.|..|+++|.. ..++++...|.|..++- .+..+..+..... ....|.+|+++|.. +.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999863 45666776676655542 2233333221111 12469999999843 444444321 12
Q ss_pred EEEEe-CCCCeEEEEeecCCCC-C-C--CCCceEEEEcCC-CcEEEEEcCC-CcEEEEECCCCc---eeeeecC------
Q 011256 298 WCFYD-LSSGICLTQVSDAGTD-G-R--PEGYTSAAFHPD-GLILGTGTSE-ALVKIWDVKSQA---NVAKFDG------ 361 (490)
Q Consensus 298 i~iwd-~~~~~~~~~~~~~~~~-~-~--~~~v~~~~~~~~-~~~l~~g~~d-g~i~iwd~~~~~---~~~~~~~------ 361 (490)
..||. ...|+.-..+...... . . ...+..++++|. ...++++... +.|. .....++ .+..+..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~-~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLW-RSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEE-EESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEE-EeCCCCcceecccCCCCCccccc
Confidence 33443 3334333332211010 0 0 012467899984 4666666633 2222 1222222 1111111
Q ss_pred --------CCCCeEEEEEcCCC-------CEEEEEeCCC-EEEEECCC-CcceeeeecCCCCCCeeEEEEcCCCCEEEEE
Q 011256 362 --------HVGAVTAISFSENG-------YYLATAAHDG-VKLWDLRK-LKNFRSFESSDSETPTNSVDFDHSGSYLAVA 424 (490)
Q Consensus 362 --------~~~~i~~l~~s~~~-------~~l~~~~~d~-i~iwd~~~-~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~ 424 (490)
....+..+.++|.. ..+.++..++ -.||-... ++.-..+...........+.++|++.+.++.
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~~~~~l~~~~ 261 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGMLYITY 261 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEECTTSEEEEEE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEECCCCeEEEEe
Confidence 12347788888743 2455554442 23343332 2222222211111122456678766665554
Q ss_pred e---------cCeEEEEEeecCCcceEeeeecCC--CCCcceEEEEEcCC-CCeEEEEe
Q 011256 425 S---------ADIRVYQVASVKADWNCIKTFPDL--SGTGKATCVKFGPD-AKYIAVGS 471 (490)
Q Consensus 425 ~---------~di~v~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~s~~ 471 (490)
. ....||..+.....|..+...... ...-....++++|. ...|+.++
T Consensus 262 ~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~ 320 (737)
T 2cn3_A 262 GDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTS 320 (737)
T ss_dssp ESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEE
T ss_pred cCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEe
Confidence 3 237788877777777776543221 00112345788874 34455444
No 378
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=73.44 E-value=5.2 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=19.5
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 42 NEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 42 ~Ewda~~le~~~l~~~l~~~~~els 66 (490)
.|+||+..|+-+||++++.+++++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888776654
No 379
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=72.94 E-value=55 Score=29.66 Aligned_cols=199 Identities=13% Similarity=0.105 Sum_probs=110.8
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEE---eCCC------CcEEEE---eccCccCEEEEEEee---CCCEEEEEeCCCc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLF---DRPS------GQIVTT---LSGHSKKVTSVKFVT---EGDLFLTGSADKT 252 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iw---d~~~------~~~~~~---~~~h~~~v~~l~~~~---~~~~l~s~s~dg~ 252 (490)
+.+..+......+.|+.-+..|.++-. ++.. |..+.. +. ....|.++...+ +..++++++.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 345555555556666666777776654 4432 222111 22 234566654433 4678999999999
Q ss_pred EEEEeCCCCCcc----ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC--CCeE-------EEEeecCCCCC
Q 011256 253 VRVWQGSEDGNY----DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS--SGIC-------LTQVSDAGTDG 319 (490)
Q Consensus 253 i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~--~~~~-------~~~~~~~~~~~ 319 (490)
|+.-.+..-... .....+.. .+.+..+........++..+..|.+..+... .-.. +..+. . .
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~---L-~ 195 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR---F-N 195 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC---C-C
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec---C-C
Confidence 998876431110 11122333 3456666666567788889999998888776 2111 11111 1 1
Q ss_pred CCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-------ceeeee--cCCCCCeEEEEEcCCCCEEEEEeCCC-EEEE
Q 011256 320 RPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-------ANVAKF--DGHVGAVTAISFSENGYYLATAAHDG-VKLW 389 (490)
Q Consensus 320 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-------~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iw 389 (490)
....|.++...+++..++..+..|.++.-.+..- +-+..+ ....+.+..+....+...++..+.+| +.-+
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~ 275 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRT 275 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEE
Confidence 2255777766666678888899999988875321 222222 22133455544443444555555565 5556
Q ss_pred ECC
Q 011256 390 DLR 392 (490)
Q Consensus 390 d~~ 392 (490)
+..
T Consensus 276 ~~~ 278 (327)
T 3uc1_A 276 AAR 278 (327)
T ss_dssp EGG
T ss_pred ehh
Confidence 554
No 380
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.67 E-value=11 Score=21.46 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=30.4
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHH
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSL 92 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~ 92 (490)
+|...|.||-.++--|+-+|++.--. ++ ..||-+.||-..+|..
T Consensus 3 nlvaqlenevaslenenetlkkknlh-kk-------------dliaylekeianlrkk 46 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLH-KK-------------DLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhccc-HH-------------HHHHHHHHHHHHHHHH
Confidence 57788999999999999998875332 22 2456676666655543
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.26 E-value=1.1e+02 Score=31.80 Aligned_cols=241 Identities=10% Similarity=0.070 Sum_probs=117.1
Q ss_pred ccCEEEEEEeeC-CCEEEEEeCCCcEEEEeCCCCCccceeeeecc----cccceEEEEEecCC-CEEEEEECCC-----e
Q 011256 229 SKKVTSVKFVTE-GDLFLTGSADKTVRVWQGSEDGNYDCKHTLKD----HTAEVQAVTVHATN-KYFVTASLDN-----T 297 (490)
Q Consensus 229 ~~~v~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~-~~l~s~~~dg-----~ 297 (490)
.+.|.+|+++|. ...++.++..+.|...+ +.+..+..+..... ....|.+|+++|.. +.++.+..+. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999985 45677777777665554 23333433221111 23469999999854 4444443321 1
Q ss_pred EEEEeCCCCeEEEEeecCCCCC----CCCCceEEEEcCC-CcEEEEEcCCCcEEEEECCCCceeeeec------CCCCCe
Q 011256 298 WCFYDLSSGICLTQVSDAGTDG----RPEGYTSAAFHPD-GLILGTGTSEALVKIWDVKSQANVAKFD------GHVGAV 366 (490)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~~~~~i 366 (490)
..+.....|+.-..+......+ ....+..++++|. ...++++...+.|.. ....|+.-..+. .....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 2223344454444433211100 0113567888884 456666664443322 222232211221 112468
Q ss_pred EEEEEcCC-CCEEEEEeCC-C-EEEEECCCCcceeeeecCCCC----------------CCeeEEEEcCCCCEEEEEe--
Q 011256 367 TAISFSEN-GYYLATAAHD-G-VKLWDLRKLKNFRSFESSDSE----------------TPTNSVDFDHSGSYLAVAS-- 425 (490)
Q Consensus 367 ~~l~~s~~-~~~l~~~~~d-~-i~iwd~~~~~~~~~~~~~~~~----------------~~i~~i~~s~~~~~l~~~~-- 425 (490)
..+.++|. +..++++..+ + |. .....++.-..+...... ..+..+.++|....|+++.
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~ 250 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYAD 250 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEES
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEec
Confidence 88999884 4455555543 3 32 222222222221111000 1126777887444444442
Q ss_pred -------cCeEEEEEeecCCcceEeeeecCCC----------CCcceEEEEEcCC-CCeEEEEeC
Q 011256 426 -------ADIRVYQVASVKADWNCIKTFPDLS----------GTGKATCVKFGPD-AKYIAVGSM 472 (490)
Q Consensus 426 -------~di~v~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~-~~~l~s~~~ 472 (490)
....||.-......|..+....... ....+..++++|. ...|++++.
T Consensus 251 ~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~ 315 (789)
T 1sqj_A 251 YPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITL 315 (789)
T ss_dssp SCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCCCCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEe
Confidence 3367777766667777665422200 0013468888874 344555543
No 382
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=69.56 E-value=55 Score=28.39 Aligned_cols=143 Identities=8% Similarity=0.015 Sum_probs=68.3
Q ss_pred EEEEEcCCCcEEEEECCCCc-eeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EE---EEECCCC----cce-eeeecCC
Q 011256 335 ILGTGTSEALVKIWDVKSQA-NVAKFDGHVGAVTAISFSENGYYLATAAHDG-VK---LWDLRKL----KNF-RSFESSD 404 (490)
Q Consensus 335 ~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~---iwd~~~~----~~~-~~~~~~~ 404 (490)
.+++.+.+|.|+--....-. ....+... ..+..+........|+..+..| ++ ++++... ..+ ..+.. .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L-~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL-P 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC-C
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC-C
Confidence 45556777877765543311 11123333 3344433333333444444554 33 3455222 111 11111 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC--eEEEEEeec---CCcceEeeeecCCCCCcceEEEEEc-CCCCeEEEEeCCCcEEE
Q 011256 405 SETPTNSVDFDHSGSYLAVASAD--IRVYQVASV---KADWNCIKTFPDLSGTGKATCVKFG-PDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 405 ~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~v~i 478 (490)
....|..+....++.+|+..+.+ ++...+... .........+.. .+.+..+... .++..|+..+.+|.+..
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~---~d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT---TCCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC---CCEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 23456666443456677777777 444444221 112222222322 3455555555 34567888888999888
Q ss_pred ecCC
Q 011256 479 FGLP 482 (490)
Q Consensus 479 w~~~ 482 (490)
|.+.
T Consensus 159 f~~~ 162 (256)
T 1zvt_A 159 FPVS 162 (256)
T ss_dssp EEGG
T ss_pred EEHH
Confidence 8764
No 383
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=68.44 E-value=13 Score=27.30 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhh
Q 011256 50 SNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQ 99 (490)
Q Consensus 50 e~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~ 99 (490)
|.-.|.-.|+.++..|..|.-+-|+. +|+.+.+|.+.+..+++.+...
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~--~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAAD--KYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788999999999999888887 8999999999998888876554
No 384
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=67.37 E-value=15 Score=25.89 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=29.2
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHh
Q 011256 43 EWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQS 96 (490)
Q Consensus 43 Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~ 96 (490)
+-+.+.-|+-.|..+++.+++|++ ++.+|+|.+++.+..|
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~--------------~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVS--------------RLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 334555667788888888888865 5788888888877655
No 385
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.62 E-value=4.1 Score=23.63 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=4.9
Q ss_pred hhHHHHHH
Q 011256 51 NFALEQQL 58 (490)
Q Consensus 51 ~~~l~~~l 58 (490)
|+.|||-|
T Consensus 33 N~mLRqvl 40 (42)
T 2oqq_A 33 NQMLRHIL 40 (42)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 386
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=66.49 E-value=8.1 Score=27.31 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=34.0
Q ss_pred CCCCChhHHHHhhhhhHHHHHHhhhHHHHHHH--------HHH---HHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHh
Q 011256 28 LTAASIPGMLGMFQNEWDGLMLSNFALEQQLH--------TAR---QELSHALYQHDAACRVIARLKKERDEARSLLAQS 96 (490)
Q Consensus 28 ~~~~sip~ll~~~q~Ewda~~le~~~l~~~l~--------~~~---~els~aly~~daa~rv~arl~kerd~~r~~l~~~ 96 (490)
++.+.+--||..+..|||++.-|....+-|-+ +-- +..-+++|+-+.+- .|=|+.+.++++.|
T Consensus 7 ~~~~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h------~kmKq~YEeEI~rL 80 (92)
T 3vp9_A 7 NTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTH------RKMKDAYEEEIKHL 80 (92)
T ss_dssp ----------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 45578999999999999998888655553332 111 33445566665553 33355555566666
Q ss_pred hhhcC
Q 011256 97 ERQIM 101 (490)
Q Consensus 97 ~~~~~ 101 (490)
...+.
T Consensus 81 r~eLe 85 (92)
T 3vp9_A 81 KLGLE 85 (92)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55543
No 387
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.41 E-value=1.4e+02 Score=31.72 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=33.0
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeee
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKF 359 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 359 (490)
..+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45677778888889999999999999999999988775
No 388
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=64.26 E-value=21 Score=24.16 Aligned_cols=58 Identities=17% Similarity=0.078 Sum_probs=46.7
Q ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHh
Q 011256 39 MFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQS 96 (490)
Q Consensus 39 ~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~ 96 (490)
+|+.|=+...--.-.|+.+|.++++++..-+-++..-..|-.+|..|-..+|..|..-
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGE 59 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGE 59 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777888999999999999988888888888888888888888877543
No 389
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=63.86 E-value=23 Score=23.17 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcCc
Q 011256 48 MLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMP 102 (490)
Q Consensus 48 ~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~~ 102 (490)
.-+.-+|++++..+++|+...=-|-+.| -.|||.+.-|.+.++|..+...+..
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stSaQDeFA--KWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSISAQDNYA--KWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456678888999999988766666666 5788999999999998888776643
No 390
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.83 E-value=33 Score=24.49 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhhc
Q 011256 87 DEARSLLAQSERQI 100 (490)
Q Consensus 87 d~~r~~l~~~~~~~ 100 (490)
.....+|..|++++
T Consensus 50 ~~ie~ElEeLTasL 63 (97)
T 2eqb_B 50 DKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344455555544
No 391
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=63.56 E-value=7.4 Score=25.45 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=21.4
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els 66 (490)
+..|+.+...+.-||-.|+.+++.++++|.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777778888888777777764
No 392
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.55 E-value=14 Score=19.20 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHH
Q 011256 39 MFQNEWDGLMLSNFALEQQLHTARQE 64 (490)
Q Consensus 39 ~~q~Ewda~~le~~~l~~~l~~~~~e 64 (490)
.|..|-..---|||+|++.+.++..|
T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45566666667788888777766544
No 393
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.25 E-value=33 Score=26.51 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=39.8
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcCc
Q 011256 41 QNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMP 102 (490)
Q Consensus 41 q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~~ 102 (490)
-+|+-.+.-+.-.|+++++...+|+.....+--.+..-+..+.+|-.++++++..++..+..
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666666555555555566667777777777777777776554
No 394
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=62.87 E-value=85 Score=28.04 Aligned_cols=238 Identities=12% Similarity=0.038 Sum_probs=116.9
Q ss_pred eCCCEEEEEeCCCcEEEEeCCCCCcc------ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeC---CCC---
Q 011256 239 TEGDLFLTGSADKTVRVWQGSEDGNY------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDL---SSG--- 306 (490)
Q Consensus 239 ~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~---~~~--- 306 (490)
|+..++++.+.+|.|+--.+..-... .....+. ..+.+..+........++..+..|.++-+.. ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 34567888999999987665431100 0001122 2234555555556677888888888666543 222
Q ss_pred ---eEEEEeecCCCCCCCCCceEEEEc---CCCcEEEEEcCCCcEEEEECCC-------CceeeeecCCCCCeEEEEEcC
Q 011256 307 ---ICLTQVSDAGTDGRPEGYTSAAFH---PDGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVGAVTAISFSE 373 (490)
Q Consensus 307 ---~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~ 373 (490)
..+..+.. . .....|.++..- .++.+++..+.+|.++-..+.. +.....+..+ +.+..+....
T Consensus 80 a~G~~i~~~l~--l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLLP--L-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTSC--C-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCeEhhhccC--C-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 21111110 1 112445555432 3456788889999999887642 2222223333 4555555544
Q ss_pred CCCEEEEEeCCC-EEEEECCCCcc-------eeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecC---Ccc
Q 011256 374 NGYYLATAAHDG-VKLWDLRKLKN-------FRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVK---ADW 440 (490)
Q Consensus 374 ~~~~l~~~~~d~-i~iwd~~~~~~-------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~---~~~ 440 (490)
+...++..+.+| +..++...... ...+.... ...|..+....++..+++.+.. ++-..+.... ...
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~ 234 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE-GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT 234 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC-CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC
Confidence 555666677776 55565533211 12222221 3456566554555666666666 4444432211 101
Q ss_pred eEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEEecCC
Q 011256 441 NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLP 482 (490)
Q Consensus 441 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 482 (490)
.-+..+......+.+..+....+...|+..+.+|.+.-+.+.
T Consensus 235 kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 235 KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 111111111123455555443444556666778877666554
No 395
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.07 E-value=21 Score=31.10 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=44.9
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhh
Q 011256 41 QNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQ 99 (490)
Q Consensus 41 q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~ 99 (490)
..|++|+..|.-.+++....+..++-..+.+.++....++.+..+.++.+..+......
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888888888888888888888888777777777666666665554443
No 396
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.97 E-value=36 Score=23.39 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhh
Q 011256 50 SNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 97 (490)
Q Consensus 50 e~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~ 97 (490)
|.-+||.+...+.+|...+--.+++-.+-+.+|..|+..-.++|..+-
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555556667778888777766666553
No 397
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=61.49 E-value=7.2 Score=24.89 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=19.4
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHH
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQE 64 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~e 64 (490)
..|..+-++|.++.-|+-+|++++..+.++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777777766554
No 398
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.46 E-value=27 Score=34.64 Aligned_cols=60 Identities=18% Similarity=0.075 Sum_probs=42.7
Q ss_pred ceEEEEcCCCcEEEEEcCC------------CcEEEEECCCCceeeeecCC-CCCeEEEEEcCCCCEEEEEeC
Q 011256 324 YTSAAFHPDGLILGTGTSE------------ALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAH 383 (490)
Q Consensus 324 v~~~~~~~~~~~l~~g~~d------------g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~ 383 (490)
.--|+|+|.|.++++-..+ ..+.+.+..+++....+.+. ...++.++|+||++.|++.-.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 4568999999977764332 24566677777766555543 458999999999998887643
No 399
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.36 E-value=15 Score=23.90 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=26.2
Q ss_pred HHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 011256 36 MLGMFQNEWDGLMLSNFALEQQLHTARQELSH 67 (490)
Q Consensus 36 ll~~~q~Ewda~~le~~~l~~~l~~~~~els~ 67 (490)
....||.|.+.+.-||-.|+.++..+++|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998888877654
No 400
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=60.53 E-value=88 Score=27.44 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=105.3
Q ss_pred ccceEEEEEecCCCEEEEEECCCeEEEE---eCCCCeEEEEeecCCCCCCCCCceEEEEcC-CCcEEEEEcCCCcEEEEE
Q 011256 274 TAEVQAVTVHATNKYFVTASLDNTWCFY---DLSSGICLTQVSDAGTDGRPEGYTSAAFHP-DGLILGTGTSEALVKIWD 349 (490)
Q Consensus 274 ~~~v~~l~~~~~~~~l~s~~~dg~i~iw---d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd 349 (490)
.+.+..+.......+++.-+.+|.++.- ++..+.... + . .....|..+.... +...++..+.+|.++...
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l----~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~ 96 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-K----SREEKIVGAFIREKFGNRLLLATKKGYVKKIP 96 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-S----STTCCEEEEEEGGGSCSEEEEEETTSEEEEEE
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-C----CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEE
Confidence 3456666655566777777888877653 333332111 1 1 1125566664421 467888999999999988
Q ss_pred CCCC------ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCCCc-------ceeeeecCCCCCCeeEEEEc
Q 011256 350 VKSQ------ANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLK-------NFRSFESSDSETPTNSVDFD 415 (490)
Q Consensus 350 ~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s 415 (490)
+..- .....+.. ...+..+....+...++..+..| +..++..... -...+.... ...+..+...
T Consensus 97 l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~ 174 (276)
T 3no0_A 97 LAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIW 174 (276)
T ss_dssp GGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEE
T ss_pred HHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEe
Confidence 6442 22222332 34566665555556777777777 6666543211 112222222 3455555555
Q ss_pred CCCCEEEEEecC--eEEEEEeecC---CcceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE--ecCC
Q 011256 416 HSGSYLAVASAD--IRVYQVASVK---ADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV--FGLP 482 (490)
Q Consensus 416 ~~~~~l~~~~~d--i~v~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i--w~~~ 482 (490)
+++.+++..+.. ++...+.... ....-+..+. ..+.+..+....+...++..+.+|.+.. +++.
T Consensus 175 ~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~---~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 175 NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG---TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC---SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc---CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 556677777766 4444432211 1111122221 2345555544334446667778888877 7653
No 401
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.39 E-value=72 Score=34.70 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCcEEEEEcCCCcEEEEECCCCceeeeec
Q 011256 322 EGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFD 360 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 360 (490)
..+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 345566677788899999999999999999999887753
No 402
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.95 E-value=95 Score=33.78 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=32.8
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 011256 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 314 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 314 (490)
.+.+++..++..++++.+.|+++++|++.++.++.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345566677888999999999999999999999888654
No 403
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=55.95 E-value=22 Score=25.14 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=42.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcCc
Q 011256 46 GLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMP 102 (490)
Q Consensus 46 a~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~~ 102 (490)
...-+.-+|+.++..++.|+...=-|-+-| --|||.+.-|.+.++|+++...+..
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFA--KWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYA--KWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888899999987766666666 5788888889998888888776643
No 404
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=55.78 E-value=52 Score=32.44 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCcEEEEEcC------------CCcEEEEECCCCceeeeecCC-CCCeEEEEEcCCCCEEEEEeCC
Q 011256 322 EGYTSAAFHPDGLILGTGTS------------EALVKIWDVKSQANVAKFDGH-VGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 322 ~~v~~~~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~d 384 (490)
.....|.|.++|.+.++... ...|..++..+++....+... ...++.++|+||++.|+++-..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 34567999999988774322 125777787777766555433 3568999999999998887543
No 405
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=55.61 E-value=37 Score=25.37 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCCChhHHHHhhhhhHHHHHHh---hhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhh
Q 011256 29 TAASIPGMLGMFQNEWDGLMLS---NFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSER 98 (490)
Q Consensus 29 ~~~sip~ll~~~q~Ewda~~le---~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~ 98 (490)
.++||-+-|..|..|++.|+-+ .|.-+++. .++|.+..|.....+....++++++..
T Consensus 3 ~a~~i~~~l~~Leae~q~L~~~E~qry~~eka~-------------AE~A~~~La~~~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLANQEEARFNEERAQ-------------ADAARQALAQNEQVYNELSQRAQRLQA 62 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888777543 22222221 245666667677777776667666655
No 406
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=54.54 E-value=37 Score=24.69 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=14.5
Q ss_pred HHHHHHhhhHHHHHHHHHHhhh
Q 011256 77 RVIARLKKERDEARSLLAQSER 98 (490)
Q Consensus 77 rv~arl~kerd~~r~~l~~~~~ 98 (490)
-.+..|.+|||-+=.-|..++.
T Consensus 32 ~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 32 GTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999977655555443
No 407
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.50 E-value=61 Score=32.89 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCEEEEEECCCeEEEEeCCCCeEEEEeec
Q 011256 276 EVQAVTVHATNKYFVTASLDNTWCFYDLSSGICLTQVSD 314 (490)
Q Consensus 276 ~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 314 (490)
.|.++.+ +..++++.+.|.++++|++.++.++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555544 478999999999999999999999888765
No 408
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.88 E-value=15 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els 66 (490)
+..|+.+-+.+.-|+..|+.++..++.||.
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777788888888888777764
No 409
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=53.73 E-value=1.2e+02 Score=27.04 Aligned_cols=190 Identities=9% Similarity=0.067 Sum_probs=106.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc-------EEE--EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEeCCC---CCc-
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQ-------IVT--TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQGSE---DGN- 263 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd~~~---~~~- 263 (490)
++..++++.+.+|.|+-..+..-. -+. .+.. .+.+..+......+.++..+..|.++-+.... .+.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456788888999999887543221 111 1222 23455555555666777788889877665432 100
Q ss_pred --cce---eeeecccccceEEEEEec---CCCEEEEEECCCeEEEEeCCCCeE-----EEEeecCCCCCCCCCceEEEEc
Q 011256 264 --YDC---KHTLKDHTAEVQAVTVHA---TNKYFVTASLDNTWCFYDLSSGIC-----LTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 264 --~~~---~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
-.. ...+. ....|.++...+ ++.+++..+..|.++...+..-.. +..+. ... ...+..+...
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~---L~~-~d~lv~~~~~ 159 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIK---LND-KDFVTSAEIV 159 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBC---CCT-TCCEEEEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEe---cCC-CCEEEEEEEe
Confidence 000 11122 234555554443 467889999999999887643211 11111 111 2455555554
Q ss_pred CCCcEEEEEcCCCcEEEEECCC---------CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECCC
Q 011256 331 PDGLILGTGTSEALVKIWDVKS---------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRK 393 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~~ 393 (490)
.++..++..+.+|.+..+.... |.....+.. ...|..+....++..+++.+..| .+.+++..
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4456677788899998887643 112222332 34566666655566777778777 77777644
No 410
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.14 E-value=27 Score=22.48 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=25.3
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELSH 67 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els~ 67 (490)
...|+.+.+.+.-||-.|+.++..++.|+..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888754
No 411
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=51.79 E-value=1.5e+02 Score=27.36 Aligned_cols=151 Identities=17% Similarity=0.055 Sum_probs=86.2
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCC---------CcEEEEeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe---CCCCC
Q 011256 195 IHYSKDVIATGGVDTNAVLFDRPS---------GQIVTTLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ---GSEDG 262 (490)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd---~~~~~ 262 (490)
+-|+..++++.+.+|.|+--.+.. +..-..++. ...+..+......+.|+..+..|.+.-+. +...+
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 446788999999999998754321 233334443 44566665555666677778888776554 32211
Q ss_pred c---cceee---eecccccceEEEEEec---CCCEEEEEECCCeEEEEeCCCCeE-----EEEeecCCCCCCCCCceEEE
Q 011256 263 N---YDCKH---TLKDHTAEVQAVTVHA---TNKYFVTASLDNTWCFYDLSSGIC-----LTQVSDAGTDGRPEGYTSAA 328 (490)
Q Consensus 263 ~---~~~~~---~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~ 328 (490)
. -..+. .+. ....|.++.... .+.+|+.++..|.++...+..... +..+. ... ...+..+.
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~---L~~-~d~lv~v~ 156 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN---LDE-GDALVGVA 156 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC---CCT-TCCEEEEE
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE---eCC-CCEEEEEE
Confidence 0 01111 122 234566665442 456999999999999887643211 11111 111 23444444
Q ss_pred EcCCCcEEEEEcCCCcEEEEECC
Q 011256 329 FHPDGLILGTGTSEALVKIWDVK 351 (490)
Q Consensus 329 ~~~~~~~l~~g~~dg~i~iwd~~ 351 (490)
.......++..+.+|.+..|+..
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGG
T ss_pred EeCCCceEEEEeCCCeEEEEEcc
Confidence 44445567777788888888753
No 412
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.41 E-value=25 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 011256 39 MFQNEWDGLMLSNFALEQQLHTARQELSH 67 (490)
Q Consensus 39 ~~q~Ewda~~le~~~l~~~l~~~~~els~ 67 (490)
.++.+...|.-||..|+.+++.+++|+..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777788777777777653
No 413
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.79 E-value=25 Score=24.64 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=16.8
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 40 FQNEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 40 ~q~Ewda~~le~~~l~~~l~~~~~els 66 (490)
++.+...|.-||-.|+.+++++++|+.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666654
No 414
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.60 E-value=64 Score=31.81 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-------------CEEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 364 GAVTAISFSENGYYLATAAHD-------------GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 364 ~~i~~l~~s~~~~~l~~~~~d-------------~i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
.....|.|.++|.+.++.... .|..++..+++....+... ....++.++|+||++.|+++-..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEEES
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEEeC
Confidence 356789999999877743221 2666666666654444322 24678999999999999887543
No 415
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=50.59 E-value=20 Score=30.42 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=20.8
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els 66 (490)
.+-..++..+.++--+.+.|++.|++++.|..
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~ 195 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRD 195 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777777766643
No 416
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=50.55 E-value=20 Score=25.36 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=39.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcCc
Q 011256 49 LSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIMP 102 (490)
Q Consensus 49 le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~~ 102 (490)
-|.-+|+.++.+++.|+...=-|-+-| --|||.+.-|.+.++|+.+...+..
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQDEFA--KWAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQDNYA--KWTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCHH--HHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888887666666666 5788999999999988888777654
No 417
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=50.34 E-value=73 Score=23.45 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=25.6
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHH---HHHHHHhhhcc
Q 011256 40 FQNEWDGLMLSNFALEQQLHTAR---QELSHALYQHD 73 (490)
Q Consensus 40 ~q~Ewda~~le~~~l~~~l~~~~---~els~aly~~d 73 (490)
-.++||.+..+.-+|+++|...+ ++|...|-+.-
T Consensus 4 t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~ 40 (112)
T 1x79_B 4 TRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSS 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999998876 45555544433
No 418
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=48.40 E-value=59 Score=32.27 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=41.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC------------C-EEEEECCCCcceeeeecCCCCCCeeEEEEcCCCCEEEEEe
Q 011256 365 AVTAISFSENGYYLATAAHD------------G-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVAS 425 (490)
Q Consensus 365 ~i~~l~~s~~~~~l~~~~~d------------~-i~iwd~~~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~ 425 (490)
..-.|+|+|.|.+++.-..+ . +.+.+..+++..+.+..+ ....++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEEE
Confidence 45779999999866654432 1 455565656554444443 468899999999999988763
No 419
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.96 E-value=74 Score=23.84 Aligned_cols=32 Identities=6% Similarity=0.173 Sum_probs=17.5
Q ss_pred HhhhhhHHHHHHh----hhHHHHHHHHHHHHHHHHh
Q 011256 38 GMFQNEWDGLMLS----NFALEQQLHTARQELSHAL 69 (490)
Q Consensus 38 ~~~q~Ewda~~le----~~~l~~~l~~~~~els~al 69 (490)
..|+.|-+.+++| .-+|+.++.++..||.+.-
T Consensus 25 e~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 25 SGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 3455556666666665543
No 420
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=47.89 E-value=59 Score=27.94 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q 011256 39 MFQNEWDGLMLSNFALEQQLHTARQELSH 67 (490)
Q Consensus 39 ~~q~Ewda~~le~~~l~~~l~~~~~els~ 67 (490)
.++.||+.+.-+.-.|..++..++.++..
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~ 38 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554444444444444444433
No 421
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=47.30 E-value=11 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=17.8
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQEL 65 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~el 65 (490)
+..|+.+-..|.-||-.|+.++..+++++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666665543
No 422
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=46.48 E-value=47 Score=20.10 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=24.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhh
Q 011256 44 WDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSE 97 (490)
Q Consensus 44 wda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~ 97 (490)
-.++-.||-.||+.|+.--.+|+ +|..|--..++-+..++
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~ls--------------kLE~ets~mKevlk~lq 51 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLT--------------KLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHH--------------HHHhhhhhHHHHHHHHc
Confidence 44666677777777766666655 56655555555555444
No 423
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=46.10 E-value=66 Score=21.70 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=36.0
Q ss_pred HhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 011256 38 GMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 100 (490)
Q Consensus 38 ~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 100 (490)
..||.|.....+-..+|++.|+.++.|-.- ..||.-.+.-..+|..|+++....
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNp---------aeIA~~~~~L~qAraDL~~l~r~~ 78 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANP---------AEIANTSQQLRHARADLADLQRRF 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCH---------HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777776665332 256666677777777777776653
No 424
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=45.65 E-value=6.7 Score=24.77 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=12.0
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHH
Q 011256 40 FQNEWDGLMLSNFALEQQLHTARQEL 65 (490)
Q Consensus 40 ~q~Ewda~~le~~~l~~~l~~~~~el 65 (490)
-||||.-- .|++.|.++.+||
T Consensus 9 aqnewelq-----alekelaqlekel 29 (80)
T 2lq4_p 9 AQNEWELQ-----ALEKELAQLEKEL 29 (80)
T ss_dssp SSSSTTTH-----HHHTTHHHHHHHH
T ss_pred HHhHHHHH-----HHHHHHHHHHHHH
Confidence 38898533 3445555555554
No 425
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.87 E-value=89 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=15.2
Q ss_pred hhhHHHHHH-------hhhHHHHHHHHHHHHHH
Q 011256 41 QNEWDGLML-------SNFALEQQLHTARQELS 66 (490)
Q Consensus 41 q~Ewda~~l-------e~~~l~~~l~~~~~els 66 (490)
|+|+++++- |...|+.++.++++.|.
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 567777765 45555555555555554
No 426
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=42.06 E-value=33 Score=20.91 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=20.4
Q ss_pred hhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 011256 75 ACRVIARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 75 a~rv~arl~kerd~~r~~l~~~~~~~~ 101 (490)
|...|-|+.||-.+||..|+.+.....
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~kY 39 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQQY 39 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888888999999988877544
No 427
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=41.92 E-value=1e+02 Score=22.61 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=14.2
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEeCCC
Q 011256 234 SVKFVTEGDLFLTGSADKTVRVWQGSE 260 (490)
Q Consensus 234 ~l~~~~~~~~l~s~s~dg~i~iwd~~~ 260 (490)
.+.+..+|++++.. .++.+ +|...+
T Consensus 60 ~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 45666677766553 34443 676543
No 428
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=40.89 E-value=2.2e+02 Score=26.20 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=78.9
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEeCCCCCcc--------ceeeeecc-cccceEEEEEecCCCEEEEEECCCeEEEEe
Q 011256 232 VTSVKFVTEGDLFLTGSADKTVRVWQGSEDGNY--------DCKHTLKD-HTAEVQAVTVHATNKYFVTASLDNTWCFYD 302 (490)
Q Consensus 232 v~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd 302 (490)
|..++. .....+.-..||.|..|-....+.+ .....+.. ....+..++++....+.+....||.|+.|-
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 444433 3445666678899999964332110 01111111 223455566666677888888999999996
Q ss_pred CCCC----------e-EEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCC-c----------eeeeec
Q 011256 303 LSSG----------I-CLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQ-A----------NVAKFD 360 (490)
Q Consensus 303 ~~~~----------~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~ 360 (490)
.... . ....+.. . ....|..++.. ....++-..+|.|+.|-.... + ....+.
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~--l--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~ 206 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIES--L--RGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVE 206 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGG--G--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECG
T ss_pred CCCCCcCCCCCCccCcCCeEecc--c--CCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEec
Confidence 5321 0 1111111 0 01234444443 344555567899999965321 0 011111
Q ss_pred C-CCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC
Q 011256 361 G-HVGAVTAISFSENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 361 ~-~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 392 (490)
. ....|..++......+.+.-..++ |+.|-..
T Consensus 207 ~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 207 ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp GGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred ccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 1 223566776644334555556666 8888654
No 429
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=40.13 E-value=59 Score=30.76 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 011256 41 QNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 41 q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 101 (490)
|.|||.- -+.-..|.+++++|+||..|-...---..++++..+--+++|.+|......++
T Consensus 307 ~qew~~~-hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~ 366 (551)
T 2b5u_A 307 QQEWDAT-HPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLA 366 (551)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHH
No 430
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.12 E-value=49 Score=21.30 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=22.8
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els 66 (490)
...|+.+.+.+.-||-.|+.++..++.|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888777764
No 431
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=39.85 E-value=88 Score=21.39 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=46.8
Q ss_pred hhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 011256 33 IPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 33 ip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 101 (490)
|.-=+..+++|-|..+-..-.+..++....+....+--.-.+-.+-+.-+..+.|.+.++|...+..+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466778888888777777777777777776655555555566666677777777777766665543
No 432
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.05 E-value=47 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=14.6
Q ss_pred HHHhhhHHHHHHHHHHhhhhcC
Q 011256 80 ARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 80 arl~kerd~~r~~l~~~~~~~~ 101 (490)
..|.+|++.+|++++.|+..++
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777666654
No 433
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.75 E-value=2.1e+02 Score=25.40 Aligned_cols=189 Identities=11% Similarity=-0.022 Sum_probs=100.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcEEE---------EeccCccCEEEEEEeeCCCEEEEEeCCCcEEEEe---CCCCCc-
Q 011256 197 YSKDVIATGGVDTNAVLFDRPSGQIVT---------TLSGHSKKVTSVKFVTEGDLFLTGSADKTVRVWQ---GSEDGN- 263 (490)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iwd---~~~~~~- 263 (490)
|+..++++.+.+|.|+--.+.+-+... .+.. .+.+..+......+.|+..+..|.+.-+. +...+.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888999998877654322111 1222 23344444455566677777888765554 332211
Q ss_pred --cceee---eecccccceEEEEEe---cCCCEEEEEECCCeEEEEeCCCCe-----EEEEeecCCCCCCCCCceEEEEc
Q 011256 264 --YDCKH---TLKDHTAEVQAVTVH---ATNKYFVTASLDNTWCFYDLSSGI-----CLTQVSDAGTDGRPEGYTSAAFH 330 (490)
Q Consensus 264 --~~~~~---~~~~h~~~v~~l~~~---~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~ 330 (490)
-..+. .+. ....|.++... .++.+++..+.+|.++...+..-. -+..+. .... ..+..+...
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~---l~~~-d~lv~~~~~ 154 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK---LVDG-DELIGVDLT 154 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC---CCTT-CCEEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE---ECCC-CEEEEEEEe
Confidence 01111 122 33456666443 346689999999999988764211 111111 1112 444444444
Q ss_pred CCCcEEEEEcCCCcEEEEECCC---------CceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-EEEEECC
Q 011256 331 PDGLILGTGTSEALVKIWDVKS---------QANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLR 392 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~-i~iwd~~ 392 (490)
.+...++..+.+|.+..++... |.....+. ....|.++...+++..+++.+..| ++-.++.
T Consensus 155 ~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 155 SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445677777888888887632 11112222 234566666555566788888887 7777663
No 434
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.26 E-value=1.1e+02 Score=21.90 Aligned_cols=29 Identities=41% Similarity=0.350 Sum_probs=18.5
Q ss_pred hHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011256 34 PGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHAL 69 (490)
Q Consensus 34 p~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~al 69 (490)
++-|.-||+|..+ .++||..++|.|-.|-
T Consensus 34 M~~ieeLQ~Ei~~-------~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 34 MSTLQELQENITA-------HEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 5667777777554 4667777776665543
No 435
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.66 E-value=2.3e+02 Score=25.22 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=101.3
Q ss_pred eeCCCEEEEEeCCCcEEEEeCCCCCcc------ceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCC---CCeE
Q 011256 238 VTEGDLFLTGSADKTVRVWQGSEDGNY------DCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLS---SGIC 308 (490)
Q Consensus 238 ~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~---~~~~ 308 (490)
-++..++++.+.+|.|+--.+..-... .....+. -.+.+..+........++..+..|.++-+... ....
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 346678899999999998765432100 0011122 23445555555567788888899987776543 2110
Q ss_pred EE--E-e-ecCCCCCCCCCceEEEEcC---CCcEEEEEcCCCcEEEEECCC-------CceeeeecCCCCCeEEEEEcCC
Q 011256 309 LT--Q-V-SDAGTDGRPEGYTSAAFHP---DGLILGTGTSEALVKIWDVKS-------QANVAKFDGHVGAVTAISFSEN 374 (490)
Q Consensus 309 ~~--~-~-~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~s~~ 374 (490)
.. . + ..... .....|.++...+ +...++..+..|.++...+.. |.....+.. .+.+..+....+
T Consensus 84 ~~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 84 ASKGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFK 161 (312)
T ss_dssp ----CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECT
T ss_pred cCCCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCC
Confidence 00 0 0 00001 1123444444332 456777888999999887632 223333443 445666655555
Q ss_pred CCEEEEEeCCC-EEEEECCCC-------cceeeeecCCCCCCeeEEEEcCCCCEEEEEecC--eEEEEE
Q 011256 375 GYYLATAAHDG-VKLWDLRKL-------KNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQV 433 (490)
Q Consensus 375 ~~~l~~~~~d~-i~iwd~~~~-------~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~ 433 (490)
+..++..+.+| +..+..... .-...+.... ...+..+..-.++..+++.+.+ ++.+.+
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 56677777777 667765432 1122222222 3455565554455666666665 555554
No 436
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=36.07 E-value=2.6e+02 Score=25.67 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=98.3
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-----------cEEEEeccC-ccCEEEEEEeeCCCEEEEEeCCCcEEEE
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSG-----------QIVTTLSGH-SKKVTSVKFVTEGDLFLTGSADKTVRVW 256 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~dg~i~iw 256 (490)
.+..++++......+.-..||.|+.|-.... .....+... ...|..++. .....+....||.|..|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEe
Confidence 4556677766666677788999999953221 111222221 224666654 44455666789999999
Q ss_pred eCCCCCcc--------ceeeeec-ccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe----------EE-EEeecCC
Q 011256 257 QGSEDGNY--------DCKHTLK-DHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI----------CL-TQVSDAG 316 (490)
Q Consensus 257 d~~~~~~~--------~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~~-~~~~~~~ 316 (490)
-....+.. .....+. .....|..++......+.+....||.|+.|-..... .. ..+..
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-- 261 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-- 261 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG--
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecc--
Confidence 64331110 0011111 122356666654334677777889999999654210 11 11111
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCCCc-----------eeeeecC-CCCCeEEEEEcCCCCEEEEEeCC
Q 011256 317 TDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQA-----------NVAKFDG-HVGAVTAISFSENGYYLATAAHD 384 (490)
Q Consensus 317 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d 384 (490)
. ....|..++... ...++-..+|.|+.|-....- ....+.. ....|..|+.. ..+.++...+
T Consensus 262 ~--~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~ 335 (389)
T 3kci_A 262 L--TGLGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTED 335 (389)
T ss_dssp G--TTSCEEEEEEET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETT
T ss_pred c--CCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCC
Confidence 0 012344444432 333444678899999653211 0111111 12345555543 3344444555
Q ss_pred C-EEEEECCC
Q 011256 385 G-VKLWDLRK 393 (490)
Q Consensus 385 ~-i~iwd~~~ 393 (490)
+ |+.|-...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 5 88886543
No 437
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=35.19 E-value=55 Score=33.25 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=29.7
Q ss_pred CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcEEEEecc
Q 011256 189 GIVSLDIHYSKDVIATGGVDTNAVLFDRPSGQIVTTLSG 227 (490)
Q Consensus 189 ~I~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 227 (490)
.|.|+.+. ..++++-+.|.++++||+.+++++.+..-
T Consensus 223 ~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45555543 67999999999999999999998877653
No 438
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.04 E-value=1.2e+02 Score=30.05 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=13.8
Q ss_pred hhHHHHHHhhhHHHHHHHHHHhhhhc
Q 011256 75 ACRVIARLKKERDEARSLLAQSERQI 100 (490)
Q Consensus 75 a~rv~arl~kerd~~r~~l~~~~~~~ 100 (490)
....+.++.+|....++++.++..++
T Consensus 556 ~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 556 KRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455555555555565555544
No 439
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.50 E-value=82 Score=19.59 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=22.0
Q ss_pred hHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHH
Q 011256 34 PGMLGMFQNEWDGLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 34 p~ll~~~q~Ewda~~le~~~l~~~l~~~~~els 66 (490)
++-...|+.|-+-+..+.-.|+++++.++.+|.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677777777777777777777666653
No 440
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.10 E-value=64 Score=18.25 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=12.0
Q ss_pred HHhhhhhHHHHHHhhhHH
Q 011256 37 LGMFQNEWDGLMLSNFAL 54 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l 54 (490)
|..|..|-.|+-.|-|.-
T Consensus 2 laalkselqalkkegfsp 19 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSP 19 (48)
T ss_dssp HHHHHHHHHHHHHTTCSH
T ss_pred hHHHHHHHHHHHHcCCCH
Confidence 455667777777776654
No 441
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.74 E-value=1.3e+02 Score=21.27 Aligned_cols=31 Identities=35% Similarity=0.235 Sum_probs=18.7
Q ss_pred ChhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011256 32 SIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHAL 69 (490)
Q Consensus 32 sip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~al 69 (490)
|.++-|.-||.|..+ .++||..++|.|-.|-
T Consensus 2 ~~M~~i~eLq~e~~~-------~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 2 SHMSTLKEVQDNITL-------HEQRLVTTRQKLKDAE 32 (96)
T ss_dssp --CCTHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 345567778887554 4667777776665543
No 442
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=32.71 E-value=62 Score=18.67 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCChhHHHHhhh--hhHHHHH
Q 011256 20 KQIVKPRPLTAASIPGMLGMFQ--NEWDGLM 48 (490)
Q Consensus 20 ~~~~~~~~~~~~sip~ll~~~q--~Ewda~~ 48 (490)
+-+++|||.-..|-=.|..-|+ |||-|++
T Consensus 4 ~~~~pp~p~~F~s~~~l~~YL~~LneYyai~ 34 (40)
T 1k8v_A 4 DFIVNPSDLVLDNKAALRDYLRQINEYFAII 34 (40)
T ss_dssp SCSSCSTTCSCSSCSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCChhhcCCHHHHHHHHHHHHHHHHHh
Confidence 3578889777777666666664 4555543
No 443
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.18 E-value=1.2e+02 Score=20.69 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhcC
Q 011256 53 ALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 53 ~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~~ 101 (490)
.+++.++.++.+...|.-+.+.+..-.-...+....+-..+..++..+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq 51 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLK 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677788888888777777777766666666666666666666666554
No 444
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=32.04 E-value=36 Score=22.96 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.3
Q ss_pred hHHHHHHhhhHHHHHHHHHH
Q 011256 76 CRVIARLKKERDEARSLLAQ 95 (490)
Q Consensus 76 ~rv~arl~kerd~~r~~l~~ 95 (490)
.|...||-+|.|++|++.++
T Consensus 59 erllsrlfeemdelreavek 78 (114)
T 2p06_A 59 ERLLSRLFEEMDELREAVEK 78 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998654
No 445
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=32.03 E-value=22 Score=19.25 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=7.6
Q ss_pred ccCCCCCCCCC
Q 011256 18 QSKQIVKPRPL 28 (490)
Q Consensus 18 ~~~~~~~~~~~ 28 (490)
|..+.|+|||.
T Consensus 2 k~~P~vPpRPs 12 (32)
T 1k4u_P 2 KPQPAVPPRPS 12 (32)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 44567888875
No 446
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.91 E-value=6.3 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=16.3
Q ss_pred hHHHHHHhhhHHHHHHHHHHhhhhcC
Q 011256 76 CRVIARLKKERDEARSLLAQSERQIM 101 (490)
Q Consensus 76 ~rv~arl~kerd~~r~~l~~~~~~~~ 101 (490)
....|||......+...++.+++.+.
T Consensus 23 enivarlendnanlekdianlekdia 48 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45666776666666666666666554
No 447
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.23 E-value=1.8e+02 Score=27.64 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=38.2
Q ss_pred hhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 011256 33 IPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARL 82 (490)
Q Consensus 33 ip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl 82 (490)
+..-+-.|-++|-++..|.-+||.+.++..++...+....+.+...++++
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~ 78 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKS 78 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 45667778899999999999999999999999887655544444444433
No 448
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.54 E-value=1.5e+02 Score=21.17 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLL 93 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l 93 (490)
|..++.+.+.+--+.-.....+..+.++|...--.+-.|.....++..|-+++-..|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555554444
No 449
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.43 E-value=1.1e+02 Score=19.51 Aligned_cols=44 Identities=18% Similarity=0.006 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHH
Q 011256 51 NFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLA 94 (490)
Q Consensus 51 ~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~ 94 (490)
.-.|+.+|.+++++...-+-++..=..|=.+|..|-..+|..|.
T Consensus 9 i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 9 VEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34677888899999888888887777887888888888887765
No 450
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.29 E-value=1.9e+02 Score=27.69 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=37.7
Q ss_pred hhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 011256 33 IPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARL 82 (490)
Q Consensus 33 ip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl 82 (490)
+..-+-.|-.+|-++..|.-+||.+.+++.++...+..+.+.+...++++
T Consensus 31 ~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~ 80 (485)
T 3qne_A 31 LVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK 80 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 35566677889999999999999999999999887665554444444433
No 451
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=29.80 E-value=1.1e+02 Score=24.01 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHh
Q 011256 52 FALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQS 96 (490)
Q Consensus 52 ~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~ 96 (490)
-....++..++..|-.|=...+.|.|.+++|.++-|.+-..|..-
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999999999999887776543
No 452
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.36 E-value=1e+02 Score=19.88 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHH
Q 011256 39 MFQNEWDGLMLSNFALEQQLHTARQE 64 (490)
Q Consensus 39 ~~q~Ewda~~le~~~l~~~l~~~~~e 64 (490)
.|+.|-..+--||-+|+.++..++.|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444
No 453
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.47 E-value=1.5e+02 Score=20.58 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=33.9
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhhc
Q 011256 40 FQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQI 100 (490)
Q Consensus 40 ~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~~ 100 (490)
+..|=..+.+|.-.++..++..|.....-+-.+..+..-+..+.|.-|++--....|+.++
T Consensus 12 l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kv 72 (86)
T 3swk_A 12 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKV 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444455556666678888888766655565544
No 454
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=27.96 E-value=1.8e+02 Score=29.27 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=37.1
Q ss_pred EEEEEecCeEEEEEeecCCcceEeeeecCCCCCcceEEEEEcCCC--CeEEEEeCCCcEEE
Q 011256 420 YLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDA--KYIAVGSMDRNLRV 478 (490)
Q Consensus 420 ~l~~~~~di~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~v~i 478 (490)
.++.|+.+++|..+-........+..........+|..+.++++. .+|++++.++.++|
T Consensus 417 V~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 577777776666553322222233333333335688899999988 89999988776665
No 455
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.73 E-value=62 Score=15.96 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=5.5
Q ss_pred hhhHHHHHHHHHHH
Q 011256 50 SNFALEQQLHTARQ 63 (490)
Q Consensus 50 e~~~l~~~l~~~~~ 63 (490)
|.-.|++.|..+|+
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 456
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=27.09 E-value=1.3e+02 Score=24.54 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHhhhh
Q 011256 54 LEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQSERQ 99 (490)
Q Consensus 54 l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~~~~~~ 99 (490)
--+-|+++|.++..++-++..-..-++.+..|.++++..|.+++-.
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 3445677777777777777777777778888888898888887654
No 457
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=26.86 E-value=4.6e+02 Score=25.73 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=49.9
Q ss_pred eEEEEeCCCCeEEEEeecCCCC-C-------CCCCceEEEEcCCCc-EEEEEcCCCcEEEEECCCCceeeee-cCCCCCe
Q 011256 297 TWCFYDLSSGICLTQVSDAGTD-G-------RPEGYTSAAFHPDGL-ILGTGTSEALVKIWDVKSQANVAKF-DGHVGAV 366 (490)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~~-~-------~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~i 366 (490)
.+..||...++........... + ....+....+.-||+ -|+.|+. ++| ..|+.+... .+|...+
T Consensus 293 ~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~ 366 (591)
T 2zux_A 293 MLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDAL 366 (591)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCE
T ss_pred EEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCee
Confidence 4788998887654333221110 0 012344445555553 3333321 122 122222222 2566677
Q ss_pred EEEEEcCC--CCEEEEEeCC-----CEEEEECCCCcceeeee
Q 011256 367 TAISFSEN--GYYLATAAHD-----GVKLWDLRKLKNFRSFE 401 (490)
Q Consensus 367 ~~l~~s~~--~~~l~~~~~d-----~i~iwd~~~~~~~~~~~ 401 (490)
....|.|+ |.-++.+.++ +..+.|.++++.+....
T Consensus 367 hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 367 HTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp EEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred EEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 77777776 4566666554 46667777777665554
No 458
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=26.63 E-value=2.9e+02 Score=26.59 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred CeEEEEEcC----CC--CEEEEEeCCC--EEEEECCCCc-------ceeeeecCCCCCCeeEEEEcCCCCEEEEEecC
Q 011256 365 AVTAISFSE----NG--YYLATAAHDG--VKLWDLRKLK-------NFRSFESSDSETPTNSVDFDHSGSYLAVASAD 427 (490)
Q Consensus 365 ~i~~l~~s~----~~--~~l~~~~~d~--i~iwd~~~~~-------~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d 427 (490)
..++|+... ++ ..++.|+.+| +++.-..... .+..+.......+|..+.+++++.+|++++..
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~ 482 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTA 482 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECC
Confidence 457766643 13 3567788888 5665443321 22333333235788999999999999999887
No 459
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.13 E-value=2.3e+02 Score=26.88 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=42.6
Q ss_pred CChhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcch---hhHHHHHHhhhHHHHHHHHHHhhhh
Q 011256 31 ASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDA---ACRVIARLKKERDEARSLLAQSERQ 99 (490)
Q Consensus 31 ~sip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~da---a~rv~arl~kerd~~r~~l~~~~~~ 99 (490)
...+.+...+++++.+++.-.-+.++-|+.+.+++..+|-+.-+ +..|.+-|+|+-++++.-+.+++++
T Consensus 348 p~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 348 PQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp TTHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 34567777888888888887777777777777666655544322 2344444555556666555544443
No 460
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=25.78 E-value=1e+02 Score=24.68 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCChhHHHHhhh---------------hhHHHHHH-------hhhHHHHHHHHHHHHHHHHhhhcc
Q 011256 29 TAASIPGMLGMFQ---------------NEWDGLML-------SNFALEQQLHTARQELSHALYQHD 73 (490)
Q Consensus 29 ~~~sip~ll~~~q---------------~Ewda~~l-------e~~~l~~~l~~~~~els~aly~~d 73 (490)
+..-+-+|||++| |=..|-++ .+.+|+++|...|+++.....+.+
T Consensus 101 ~l~G~daLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kl~~~r~~~~~~v~~~~ 167 (170)
T 1xmp_A 101 ALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGS 167 (170)
T ss_dssp TTTTHHHHHHHHCCCTTCCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcHHHHHHHhcCCCCCeeEEEecCCcchHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667889999999 44555333 677888888888887766554443
No 461
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=25.78 E-value=1.1e+02 Score=29.99 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCeEEEEecCCC--CEEEEEeCCCcEEEEeCCCC----cEEEEec--cCccCEE-EEEEeeCCCEEEEEeCCCcEEE
Q 011256 188 PGIVSLDIHYSK--DVIATGGVDTNAVLFDRPSG----QIVTTLS--GHSKKVT-SVKFVTEGDLFLTGSADKTVRV 255 (490)
Q Consensus 188 ~~I~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~--~h~~~v~-~l~~~~~~~~l~s~s~dg~i~i 255 (490)
..+++|+....+ ..++.|..+|.|.-..+..+ ..+..+. ....+|. .+.+++++.+|++++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 357777766544 36778999998765544322 1233332 2346785 8999999999999888765554
No 462
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.77 E-value=1.6e+02 Score=20.07 Aligned_cols=41 Identities=7% Similarity=-0.012 Sum_probs=23.4
Q ss_pred CCCCCCChhHHHHhhhhhHHHHHH---hhhHHHHHHHHHHHHHH
Q 011256 26 RPLTAASIPGMLGMFQNEWDGLML---SNFALEQQLHTARQELS 66 (490)
Q Consensus 26 ~~~~~~sip~ll~~~q~Ewda~~l---e~~~l~~~l~~~~~els 66 (490)
+..+...+=.|.+.||.|--|-.. |.-..|..+..+..+|-
T Consensus 5 ~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 5 EAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777999999999877554 44444444444444443
No 463
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=25.42 E-value=1.7e+02 Score=21.65 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=34.1
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERD 87 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd 87 (490)
|.++|.|-+-+.-|.-+|.....+..+.+...=-...+-..++|+++++--
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDis 54 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIVNDLT 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHH
Confidence 677888888777777777777777666665522212455777888877663
No 464
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.32 E-value=2.3e+02 Score=22.24 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.7
Q ss_pred HHHHhhhhc
Q 011256 92 LLAQSERQI 100 (490)
Q Consensus 92 ~l~~~~~~~ 100 (490)
+|.+|++++
T Consensus 87 ElEeLTasL 95 (154)
T 2ocy_A 87 EVEDLTASL 95 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 465
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=25.11 E-value=37 Score=17.64 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=5.0
Q ss_pred HHhhhHHHHHHHH
Q 011256 48 MLSNFALEQQLHT 60 (490)
Q Consensus 48 ~le~~~l~~~l~~ 60 (490)
+-|.-+++++.+.
T Consensus 5 kkELtQIK~kvDs 17 (28)
T 1txp_A 5 KKELTQIKQKVDS 17 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 466
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=24.48 E-value=23 Score=25.41 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.6
Q ss_pred HhhhhhHHHHHHhhhHHHH
Q 011256 38 GMFQNEWDGLMLSNFALEQ 56 (490)
Q Consensus 38 ~~~q~Ewda~~le~~~l~~ 56 (490)
.-|+.|++.+|.|.++-|+
T Consensus 10 ~eFdre~~kmm~eS~~sRk 28 (97)
T 2wjv_D 10 EDFIQALDKMMLENLQQRS 28 (97)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4699999999999887765
No 467
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=24.47 E-value=3.8e+02 Score=23.93 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=89.4
Q ss_pred CCeEEEEecCCCCEEEEEeCCCcEEEEe---CCC------CcEEE---EeccCccCEEEEEEeeC---CCEEEEEeCCCc
Q 011256 188 PGIVSLDIHYSKDVIATGGVDTNAVLFD---RPS------GQIVT---TLSGHSKKVTSVKFVTE---GDLFLTGSADKT 252 (490)
Q Consensus 188 ~~I~~~~~~~~~~~l~~~~~dg~i~iwd---~~~------~~~~~---~~~~h~~~v~~l~~~~~---~~~l~s~s~dg~ 252 (490)
+.+..+......+.|+..+..|.++-+. +.. |..+. .+. ....|.++...++ +.+++.++.+|.
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 4555555555667777778888876654 322 22111 122 2344665543332 567899999999
Q ss_pred EEEEeCCCCCc-----cceeeeecccccceEEEEEecCCCEEEEEECCCeEEEEeCCCCe-------EEEEeecCCCCCC
Q 011256 253 VRVWQGSEDGN-----YDCKHTLKDHTAEVQAVTVHATNKYFVTASLDNTWCFYDLSSGI-------CLTQVSDAGTDGR 320 (490)
Q Consensus 253 i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~ 320 (490)
++...+..-.. ......+.. .+.+..+........++..+.+|.+..+....-. -+.-+. . ..
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~---L-~~ 192 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMN---L-KE 192 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCC---C-CT
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEE---e-CC
Confidence 99887642110 011122332 2566666655566788888999998888764311 111111 1 11
Q ss_pred CCCceEEEEcCCCc-EEEEEcCCCcEEEEECC
Q 011256 321 PEGYTSAAFHPDGL-ILGTGTSEALVKIWDVK 351 (490)
Q Consensus 321 ~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~ 351 (490)
...|.++...+++. .+++.+..|..+..++.
T Consensus 193 ~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 193 GDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp TCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 24466665444444 67777888888877764
No 468
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.36 E-value=2.2e+02 Score=21.13 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHH--Hhhh-----cchhhHHHHHHhhhHHHHHHHHHHhhh
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSH--ALYQ-----HDAACRVIARLKKERDEARSLLAQSER 98 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~--aly~-----~daa~rv~arl~kerd~~r~~l~~~~~ 98 (490)
+.+..|+...|.+..|+-.|.-+++.++..+.. ..|+ +..+..-+..+.|.-|++--....|+.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 346677888888877777777776666644332 2233 333344455666666665444444443
No 469
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=24.11 E-value=2.6e+02 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcc
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHD 73 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~d 73 (490)
+-|..|+++=..+..|.-.++.||.++|++++++.-++|
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777888888888888876655554
No 470
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=24.04 E-value=60 Score=28.14 Aligned_cols=21 Identities=24% Similarity=0.136 Sum_probs=13.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHH
Q 011256 46 GLMLSNFALEQQLHTARQELS 66 (490)
Q Consensus 46 a~~le~~~l~~~l~~~~~els 66 (490)
.+.-||-+||+++.++++++.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888887777654
No 471
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=23.97 E-value=3.2e+02 Score=27.59 Aligned_cols=153 Identities=8% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC----EEEEECCC----Ccceeeeec
Q 011256 331 PDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG----VKLWDLRK----LKNFRSFES 402 (490)
Q Consensus 331 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d~----i~iwd~~~----~~~~~~~~~ 402 (490)
++....++-+.+|.|+--.-..-.....-......+..+....+...|+.-+..| +.+|++.. +..+..+-.
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ll~ 549 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 549 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSC
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHhccC
Q ss_pred CCCCCCeeEEEEcCCCCEEEEEecC--eEEEEEeecCCcceEeeeecCCCCCcceEEEEEc-CCCCeEEEEeCCCcEEEe
Q 011256 403 SDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFG-PDAKYIAVGSMDRNLRVF 479 (490)
Q Consensus 403 ~~~~~~i~~i~~s~~~~~l~~~~~d--i~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~v~iw 479 (490)
......|..+....++.+++.++.. ++...+.........-...........+..+... ..+..++..+.+|.+..|
T Consensus 550 l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf 629 (716)
T 1zvu_A 550 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 629 (716)
T ss_dssp CCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEE
Q ss_pred cCCC
Q 011256 480 GLPG 483 (490)
Q Consensus 480 ~~~~ 483 (490)
....
T Consensus 630 ~~~~ 633 (716)
T 1zvu_A 630 PVSD 633 (716)
T ss_dssp ESTT
T ss_pred EHHH
No 472
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.94 E-value=2.6e+02 Score=26.78 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=32.5
Q ss_pred ChhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 011256 32 SIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALY 70 (490)
Q Consensus 32 sip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly 70 (490)
.+..-+-.|-.+|-++..|.-+||.+.+++.++...+..
T Consensus 34 ~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 34 DIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667778899999999999999999999998877544
No 473
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.86 E-value=2.5e+02 Score=27.11 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=30.4
Q ss_pred HHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q 011256 35 GMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQH 72 (490)
Q Consensus 35 ~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~ 72 (490)
.-+..+-++|-++..|.-+|+.+.++..++...+....
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~ 107 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQ 107 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44556788999999999999999999998888755443
No 474
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.47 E-value=2.2e+02 Score=28.71 Aligned_cols=59 Identities=12% Similarity=0.230 Sum_probs=36.0
Q ss_pred EEEEEecCeEEEEEeecC-Ccc-----eEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCcEEE
Q 011256 420 YLAVASADIRVYQVASVK-ADW-----NCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRV 478 (490)
Q Consensus 420 ~l~~~~~di~v~~~~~~~-~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 478 (490)
.++.|+.+++|..+-... ... ..+..+.......+|..+.++++..+|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 466777775554432111 111 12223333334668899999999999999998887665
No 475
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=23.37 E-value=1.6e+02 Score=19.15 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=10.3
Q ss_pred hhHHHHHHhhhHHHHHHH
Q 011256 42 NEWDGLMLSNFALEQQLH 59 (490)
Q Consensus 42 ~Ewda~~le~~~l~~~l~ 59 (490)
|+||.+.+||=+-=..|.
T Consensus 1 n~WD~~LveNgekI~~L~ 18 (64)
T 3t97_C 1 NAWDRTLIENGEKITSLH 18 (64)
T ss_dssp --CTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 789999888755433333
No 476
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.30 E-value=2.3e+02 Score=22.99 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=16.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 011256 45 DGLMLSNFALEQQLHTARQELSH 67 (490)
Q Consensus 45 da~~le~~~l~~~l~~~~~els~ 67 (490)
..+..|++.|.+||+...+|+..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~ 45 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQ 45 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688888888877776653
No 477
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=22.23 E-value=1.2e+02 Score=24.05 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=31.0
Q ss_pred CCCChhHHHHhhh---------------hhHHHHHH-------hhhHHHHHHHHHHHHHHHHhhhcc
Q 011256 29 TAASIPGMLGMFQ---------------NEWDGLML-------SNFALEQQLHTARQELSHALYQHD 73 (490)
Q Consensus 29 ~~~sip~ll~~~q---------------~Ewda~~l-------e~~~l~~~l~~~~~els~aly~~d 73 (490)
+..-+-+|||++| |=..|-++ .+.+|+++|...|+++.....+.+
T Consensus 93 ~l~G~dsLlS~vqmp~GvPVatV~I~~a~~~nAa~lAa~Il~~~d~~l~~kl~~~r~~~~~~v~~~~ 159 (163)
T 3ors_A 93 SLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQ 159 (163)
T ss_dssp TTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHhhCCCCCceEEEEcCCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567889999999 45554332 467788888888888766554443
No 478
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=22.12 E-value=2.2e+02 Score=20.40 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhH
Q 011256 51 NFALEQQLHTARQELSHALYQHDAACRVIARLKKER 86 (490)
Q Consensus 51 ~~~l~~~l~~~~~els~aly~~daa~rv~arl~ker 86 (490)
+|+++.|+-..+++. |..+-..|..-+-|+.|.|
T Consensus 11 T~e~E~q~~~~kk~~--aekql~~A~e~~eKl~KKr 44 (101)
T 3teq_A 11 THEVEVQYYNIKKQN--AEKQLMVAKEGAEKIKKKR 44 (101)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHhh
Confidence 455555555444442 2233344555566777776
No 479
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.91 E-value=1.5e+02 Score=20.18 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=10.7
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHH
Q 011256 40 FQNEWDGLMLSNFALEQQLHTARQEL 65 (490)
Q Consensus 40 ~q~Ewda~~le~~~l~~~l~~~~~el 65 (490)
||.+=..+.-|.-.|+++...++++|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 480
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.70 E-value=1.6e+02 Score=32.14 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhH-------HHHHHhhhHHHHHHHHHHhhh
Q 011256 37 LGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACR-------VIARLKKERDEARSLLAQSER 98 (490)
Q Consensus 37 l~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~r-------v~arl~kerd~~r~~l~~~~~ 98 (490)
|..++.+-..+.-+.-+++.++..+++++..+.-+..+..+ -+.++.++..++.+.+.+++.
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444334444555555555444444333332222 334444444444444444433
No 481
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.42 E-value=2.4e+02 Score=20.47 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=30.1
Q ss_pred CCEEEEEECCCeEEEEeCCCCeEEEEeecCCCCCCCCCceEEEEcCCCcEEEEEcCCCcEEEEECCC
Q 011256 286 NKYFVTASLDNTWCFYDLSSGICLTQVSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKS 352 (490)
Q Consensus 286 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 352 (490)
+.+.+.-..||.+.+|+...+..+...... . ...-..+.+..+|++++... ++.+ +|...+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~---~-~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTS---G-RGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCT---T-SCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcc---c-CCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 455555556666666664323333322211 0 01224567777777766533 3433 676443
No 482
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=21.19 E-value=25 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=29.2
Q ss_pred HHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchh
Q 011256 36 MLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAA 75 (490)
Q Consensus 36 ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa 75 (490)
+-+.+|.|+.++-.|+|...=.+--.|.+-...+|+.|..
T Consensus 14 ~k~f~qtef~~vdfetfr~nfn~cl~req~~~~iyedddy 53 (135)
T 2i15_A 14 LKQFVQTEFEKVDFETFRQNFNRCLEREQSTLLIYEDDDY 53 (135)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHTSCSCTTTSSCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhcccEEEecCCCC
Confidence 3456799999999999987766666666666666766543
No 483
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.16 E-value=1.8e+02 Score=28.03 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=40.9
Q ss_pred CeeEEEEcCC----C--CEEEEEecCeEEEEEeecCCc------ceEeeeecCCCCCcceEEEEEcCCCCeEEEEeCCCc
Q 011256 408 PTNSVDFDHS----G--SYLAVASADIRVYQVASVKAD------WNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRN 475 (490)
Q Consensus 408 ~i~~i~~s~~----~--~~l~~~~~di~v~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 475 (490)
..++|+.+.- + ..++.|+.+++|..+-..... ...+..+.......+|..+.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 3466655432 3 346667777555554321111 111222332222568899999999999999998876
Q ss_pred EEE
Q 011256 476 LRV 478 (490)
Q Consensus 476 v~i 478 (490)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 484
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.73 E-value=43 Score=21.11 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=11.9
Q ss_pred hHHHHhhhhhHHHHHHhhhHHH
Q 011256 34 PGMLGMFQNEWDGLMLSNFALE 55 (490)
Q Consensus 34 p~ll~~~q~Ewda~~le~~~l~ 55 (490)
..-|..+|.+-..++-||-.||
T Consensus 40 s~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 40 SDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhhc
Confidence 3344555555555555555555
No 485
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=20.26 E-value=1.4e+02 Score=24.16 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=33.8
Q ss_pred CCCChhHHHHhhh---------------hhHHHHHH-------hhhHHHHHHHHHHHHHHHHhhhcchh
Q 011256 29 TAASIPGMLGMFQ---------------NEWDGLML-------SNFALEQQLHTARQELSHALYQHDAA 75 (490)
Q Consensus 29 ~~~sip~ll~~~q---------------~Ewda~~l-------e~~~l~~~l~~~~~els~aly~~daa 75 (490)
+..-+-+||+++| |=..|-++ .+.+|+++|...|+++...+.+.+..
T Consensus 111 ~l~G~dsLlSivqmP~GvpVatV~I~~a~~~nAallAaqIla~~d~~l~~kL~~~r~~~~~~v~~~~~~ 179 (182)
T 1u11_A 111 ALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQTASVPNSPIT 179 (182)
T ss_dssp TTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHSCSSCC-
T ss_pred CCCcHHHHHHHhcCCCCCceEEEecCCccchHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677889999999 55555433 67788888888888877766655543
No 486
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.24 E-value=2.9e+02 Score=26.17 Aligned_cols=42 Identities=17% Similarity=0.050 Sum_probs=21.8
Q ss_pred ChhHHHHhhhhhHHHHHHhhh----------HHHHHHHHHHHHHHHHhhhcc
Q 011256 32 SIPGMLGMFQNEWDGLMLSNF----------ALEQQLHTARQELSHALYQHD 73 (490)
Q Consensus 32 sip~ll~~~q~Ewda~~le~~----------~l~~~l~~~~~els~aly~~d 73 (490)
+.-..|..+|.+++.++-++- .|+|||..+++-+..+-.|.-
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 444556666666666544322 255555555555555444433
No 487
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=20.17 E-value=2.1e+02 Score=19.38 Aligned_cols=30 Identities=33% Similarity=0.219 Sum_probs=18.0
Q ss_pred hhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011256 33 IPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHAL 69 (490)
Q Consensus 33 ip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~al 69 (490)
-++-|.-||+|..+. ++||..++|.|-.|-
T Consensus 3 ~M~~l~eLq~e~~~~-------E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 3 HMSTLKEVQDNITLH-------EQRLVTTRQKLKDAE 32 (78)
T ss_dssp --CHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 355677788875554 566766666665443
No 488
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.12 E-value=2e+02 Score=19.13 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhc
Q 011256 52 FALEQQLHTARQELSHALYQH 72 (490)
Q Consensus 52 ~~l~~~l~~~~~els~aly~~ 72 (490)
-+|.++|..+++||...-.|+
T Consensus 12 ~EL~~~L~elk~ELf~LR~q~ 32 (72)
T 3j21_W 12 EEIDAKIRELRLQLAKERGLL 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544443
No 489
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.08 E-value=2.9e+02 Score=20.86 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=32.6
Q ss_pred hhHHHHhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHH
Q 011256 33 IPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLA 94 (490)
Q Consensus 33 ip~ll~~~q~Ewda~~le~~~l~~~l~~~~~els~aly~~daa~rv~arl~kerd~~r~~l~ 94 (490)
+--.++.|+-|-+++.--+-.|+.++..+.+.....+-+ +...++.+..+...+|..++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ---IQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666555544432 23345555555555554433
No 490
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=20.01 E-value=7e+02 Score=25.37 Aligned_cols=203 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred ccceEEEEEecCC-CEEEEEECCCeEEEEeCCCCeEEEEeecC----------CCCCCCCCceEEEEcC-CCcEEEEEcC
Q 011256 274 TAEVQAVTVHATN-KYFVTASLDNTWCFYDLSSGICLTQVSDA----------GTDGRPEGYTSAAFHP-DGLILGTGTS 341 (490)
Q Consensus 274 ~~~v~~l~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~-~~~~l~~g~~ 341 (490)
.+.|.+|.++|.+ ..++++...|.|...+=............ .. ..+.+++++| +...++++..
T Consensus 20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~----~~~~~ia~dp~~~~~~~~~~g 95 (763)
T 3a0f_A 20 GGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANL----LGTESIALDPHNPDRLYLAQG 95 (763)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCC----CSEEEEECCTTCTTCEEEEEC
T ss_pred CCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccc----cceeEEEECCCCCCEEEEEec
Q ss_pred C------CcEEEEECCCCceeeeec---------CCCCCeEEEEEcCCC-CEEEEEeCCCEEEEECCCCcceeeeecCCC
Q 011256 342 E------ALVKIWDVKSQANVAKFD---------GHVGAVTAISFSENG-YYLATAAHDGVKLWDLRKLKNFRSFESSDS 405 (490)
Q Consensus 342 d------g~i~iwd~~~~~~~~~~~---------~~~~~i~~l~~s~~~-~~l~~~~~d~i~iwd~~~~~~~~~~~~~~~ 405 (490)
. +...+.....|+.-..+. ........++++|.. ..+.++...+........++.-..+.....
T Consensus 96 ~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 96 DYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp SCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCC
T ss_pred ccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcc
Q ss_pred C----CCeeEEEEcCCC-CEEEEEecCe-EEEEEeecCCcceEeeeecCCC-----------------CCcceEEEEEcC
Q 011256 406 E----TPTNSVDFDHSG-SYLAVASADI-RVYQVASVKADWNCIKTFPDLS-----------------GTGKATCVKFGP 462 (490)
Q Consensus 406 ~----~~i~~i~~s~~~-~~l~~~~~di-~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~ 462 (490)
. ..+..+.++|.. ..++++..+. .||.-.....+|..+....... .......+.+.+
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 255 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGK 255 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECT
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECC
Q ss_pred CCCeEEE--------EeCCCcEEEec
Q 011256 463 DAKYIAV--------GSMDRNLRVFG 480 (490)
Q Consensus 463 ~~~~l~s--------~~~dg~v~iw~ 480 (490)
++.+.++ ++..+.|...+
T Consensus 256 ~g~l~~~~~~~~~~~~~~~g~v~rS~ 281 (763)
T 3a0f_A 256 NGRLYITYSDAPGPWGVLYGEVWSYD 281 (763)
T ss_dssp TSCEEEEEESSCSSSCCCCEEEEEEE
T ss_pred CCcEEEEeccCCCCCCCcceeEEEEe
Done!