Query 011257
Match_columns 490
No_of_seqs 560 out of 2107
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 23:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7E-49 1.5E-53 331.8 28.0 328 31-466 111-476 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 8.5E-46 1.8E-50 317.2 21.1 285 30-468 170-457 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.7E-45 5.8E-50 310.2 23.5 285 32-426 154-479 (480)
4 KOG1354 Serine/threonine prote 100.0 2.1E-44 4.6E-49 300.9 20.4 367 11-441 6-372 (433)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-40 5.2E-45 283.8 18.2 259 10-426 195-458 (459)
6 KOG0279 G protein beta subunit 100.0 6E-38 1.3E-42 255.2 30.6 298 30-428 10-313 (315)
7 KOG0286 G-protein beta subunit 100.0 7.4E-38 1.6E-42 256.2 29.4 286 31-426 51-343 (343)
8 KOG0286 G-protein beta subunit 100.0 1.1E-37 2.4E-42 255.2 28.5 288 93-464 48-338 (343)
9 KOG0318 WD40 repeat stress pro 100.0 9.6E-37 2.1E-41 268.7 34.1 379 30-467 54-599 (603)
10 KOG0315 G-protein beta subunit 100.0 4E-37 8.6E-42 246.2 28.1 297 48-450 11-309 (311)
11 KOG0273 Beta-transducin family 100.0 7.9E-37 1.7E-41 265.7 30.5 283 31-428 231-523 (524)
12 COG5170 CDC55 Serine/threonine 100.0 4.6E-39 1E-43 265.8 15.8 363 15-429 6-368 (460)
13 KOG0319 WD40-repeat-containing 100.0 7.7E-36 1.7E-40 273.3 28.6 387 32-464 102-612 (775)
14 KOG0265 U5 snRNP-specific prot 100.0 1.4E-35 3E-40 243.8 26.7 285 32-467 44-334 (338)
15 KOG0273 Beta-transducin family 100.0 1.2E-35 2.6E-40 258.4 27.1 322 33-457 176-509 (524)
16 KOG0295 WD40 repeat-containing 100.0 7.6E-36 1.6E-40 251.5 24.4 285 31-427 104-405 (406)
17 KOG0263 Transcription initiati 100.0 9.7E-36 2.1E-40 275.3 24.3 264 35-431 378-652 (707)
18 KOG0296 Angio-associated migra 100.0 1.5E-34 3.3E-39 243.9 27.8 326 30-462 59-389 (399)
19 KOG0291 WD40-repeat-containing 100.0 1.1E-33 2.4E-38 259.6 34.0 350 31-464 141-543 (893)
20 KOG0315 G-protein beta subunit 100.0 9E-34 2E-38 227.1 27.7 268 127-468 11-285 (311)
21 KOG0284 Polyadenylation factor 100.0 1.6E-35 3.4E-40 253.2 18.5 279 35-468 96-377 (464)
22 KOG0293 WD40 repeat-containing 100.0 2.4E-34 5.3E-39 246.2 23.5 291 31-429 220-514 (519)
23 KOG0279 G protein beta subunit 100.0 2.7E-33 5.8E-38 228.1 27.6 279 92-460 7-302 (315)
24 KOG0282 mRNA splicing factor [ 100.0 7.5E-35 1.6E-39 254.4 19.5 290 31-426 210-503 (503)
25 KOG0291 WD40-repeat-containing 100.0 5.4E-33 1.2E-37 255.1 30.8 304 36-437 308-620 (893)
26 KOG0266 WD40 repeat-containing 100.0 5.4E-33 1.2E-37 264.3 30.9 282 33-461 157-442 (456)
27 KOG0316 Conserved WD40 repeat- 100.0 3.1E-33 6.7E-38 222.2 24.1 280 32-468 14-297 (307)
28 KOG0645 WD40 repeat protein [G 100.0 2.4E-32 5.2E-37 221.7 29.5 290 32-428 11-311 (312)
29 KOG0295 WD40 repeat-containing 100.0 1E-33 2.2E-38 238.8 22.3 274 113-464 109-399 (406)
30 KOG0285 Pleiotropic regulator 100.0 3.8E-33 8.3E-38 234.7 23.8 291 32-429 148-440 (460)
31 KOG0263 Transcription initiati 100.0 7.5E-34 1.6E-38 262.9 20.0 265 113-467 379-645 (707)
32 KOG0318 WD40 repeat stress pro 100.0 5.1E-32 1.1E-36 239.0 30.4 309 32-428 187-602 (603)
33 cd00200 WD40 WD40 domain, foun 100.0 7.8E-32 1.7E-36 244.8 33.0 281 33-426 7-289 (289)
34 KOG0276 Vesicle coat complex C 100.0 4.8E-33 1E-37 250.2 24.0 275 33-461 11-289 (794)
35 KOG0296 Angio-associated migra 100.0 1E-31 2.2E-36 226.8 26.8 305 15-428 89-398 (399)
36 PLN00181 protein SPA1-RELATED; 100.0 6.3E-31 1.4E-35 269.1 38.4 308 30-427 478-792 (793)
37 KOG0319 WD40-repeat-containing 100.0 3.7E-32 7.9E-37 249.3 24.0 294 32-429 320-620 (775)
38 KOG0285 Pleiotropic regulator 100.0 4.7E-32 1E-36 228.2 22.6 291 83-465 134-433 (460)
39 KOG0284 Polyadenylation factor 100.0 8.6E-33 1.9E-37 236.5 16.7 242 32-428 135-380 (464)
40 KOG1407 WD40 repeat protein [F 100.0 7.2E-31 1.6E-35 212.0 26.4 277 30-419 15-293 (313)
41 KOG0313 Microtubule binding pr 100.0 1.2E-31 2.5E-36 227.6 22.8 302 15-461 85-409 (423)
42 KOG0645 WD40 repeat protein [G 100.0 1.3E-30 2.9E-35 211.6 27.9 288 93-464 7-303 (312)
43 KOG0292 Vesicle coat complex C 100.0 5.4E-31 1.2E-35 246.0 29.3 326 13-460 32-384 (1202)
44 KOG0283 WD40 repeat-containing 100.0 2.1E-31 4.6E-36 248.8 25.9 271 33-428 265-576 (712)
45 KOG0772 Uncharacterized conser 100.0 3.3E-31 7.1E-36 233.3 24.5 323 32-481 164-499 (641)
46 KOG0281 Beta-TrCP (transducin 100.0 6.6E-32 1.4E-36 226.5 16.5 277 33-432 195-481 (499)
47 KOG0292 Vesicle coat complex C 100.0 1E-30 2.2E-35 244.1 24.8 289 34-462 8-313 (1202)
48 KOG0278 Serine/threonine kinas 100.0 1.1E-31 2.4E-36 215.2 15.4 281 31-468 10-294 (334)
49 KOG0306 WD40-repeat-containing 100.0 3.1E-30 6.8E-35 237.0 26.7 285 110-468 371-661 (888)
50 KOG0643 Translation initiation 100.0 3E-30 6.4E-35 209.1 22.1 292 31-429 6-318 (327)
51 KOG0306 WD40-repeat-containing 100.0 5.8E-30 1.2E-34 235.3 25.9 291 29-429 367-665 (888)
52 KOG1446 Histone H3 (Lys4) meth 100.0 9.3E-29 2E-33 205.8 30.6 276 34-459 13-293 (311)
53 KOG0275 Conserved WD40 repeat- 100.0 1.8E-30 3.9E-35 216.1 19.7 283 33-458 211-496 (508)
54 KOG0268 Sof1-like rRNA process 100.0 7.4E-31 1.6E-35 221.4 17.2 295 19-431 50-348 (433)
55 KOG0640 mRNA cleavage stimulat 100.0 3.2E-30 6.9E-35 213.3 20.3 312 32-468 109-424 (430)
56 cd00200 WD40 WD40 domain, foun 100.0 7.7E-29 1.7E-33 225.1 31.7 271 113-462 10-282 (289)
57 PTZ00421 coronin; Provisional 100.0 6.4E-29 1.4E-33 235.2 31.9 304 18-454 5-316 (493)
58 KOG0277 Peroxisomal targeting 100.0 4.7E-30 1E-34 206.5 19.6 244 112-427 60-308 (311)
59 KOG0266 WD40 repeat-containing 100.0 6E-29 1.3E-33 236.7 27.4 248 31-428 199-454 (456)
60 KOG0282 mRNA splicing factor [ 100.0 4.6E-30 9.9E-35 224.6 17.7 282 92-460 206-493 (503)
61 KOG0293 WD40 repeat-containing 100.0 6.8E-29 1.5E-33 213.0 23.4 277 113-465 225-506 (519)
62 PLN00181 protein SPA1-RELATED; 100.0 5E-28 1.1E-32 247.9 33.4 279 113-461 484-783 (793)
63 KOG0265 U5 snRNP-specific prot 100.0 1E-28 2.2E-33 203.5 21.9 263 13-425 70-335 (338)
64 KOG0305 Anaphase promoting com 100.0 2.9E-28 6.2E-33 222.1 24.4 258 14-430 199-463 (484)
65 KOG0310 Conserved WD40 repeat- 100.0 2.8E-28 6E-33 213.9 21.8 270 113-461 27-299 (487)
66 KOG0647 mRNA export protein (c 100.0 2.6E-27 5.6E-32 195.5 25.9 282 33-461 25-313 (347)
67 KOG0973 Histone transcription 100.0 4.9E-28 1.1E-32 232.3 25.0 313 34-465 12-349 (942)
68 KOG0281 Beta-TrCP (transducin 100.0 1.6E-29 3.5E-34 212.3 12.3 252 113-451 198-459 (499)
69 PTZ00420 coronin; Provisional 100.0 1.3E-26 2.8E-31 220.4 33.6 263 53-454 50-319 (568)
70 KOG0299 U3 snoRNP-associated p 100.0 2.4E-27 5.2E-32 206.5 25.9 313 32-473 139-459 (479)
71 KOG0276 Vesicle coat complex C 100.0 2.3E-28 4.9E-33 220.4 19.8 257 113-489 14-275 (794)
72 KOG0641 WD40 repeat protein [G 100.0 5.9E-26 1.3E-30 179.9 29.8 307 32-467 29-345 (350)
73 KOG0288 WD40 repeat protein Ti 100.0 2.9E-28 6.2E-33 209.3 17.4 276 31-460 171-450 (459)
74 KOG1408 WD40 repeat protein [F 100.0 4.4E-27 9.5E-32 215.2 26.0 398 33-456 76-562 (1080)
75 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.4E-32 192.9 19.0 267 116-454 12-291 (311)
76 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.7E-31 218.9 28.3 281 34-437 207-490 (537)
77 KOG0289 mRNA splicing factor [ 100.0 2.2E-26 4.8E-31 198.9 26.1 279 34-464 218-499 (506)
78 KOG0313 Microtubule binding pr 100.0 1E-26 2.2E-31 197.8 22.8 273 31-428 140-418 (423)
79 KOG0300 WD40 repeat-containing 100.0 7.8E-27 1.7E-31 194.0 21.2 306 29-456 142-459 (481)
80 KOG1036 Mitotic spindle checkp 100.0 1.4E-25 3E-30 186.0 27.8 276 35-461 13-294 (323)
81 KOG1407 WD40 repeat protein [F 100.0 7.6E-26 1.7E-30 183.1 24.2 274 113-465 21-296 (313)
82 KOG1063 RNA polymerase II elon 100.0 3.2E-26 6.9E-31 209.0 24.4 385 30-478 186-655 (764)
83 KOG1332 Vesicle coat complex C 100.0 7.6E-27 1.6E-31 187.0 17.8 266 30-374 6-290 (299)
84 KOG4283 Transcription-coupled 100.0 2.2E-25 4.8E-30 183.5 26.3 309 31-464 39-358 (397)
85 KOG2106 Uncharacterized conser 100.0 5.6E-25 1.2E-29 193.8 30.2 364 26-463 95-513 (626)
86 KOG1408 WD40 repeat protein [F 100.0 9.2E-26 2E-30 206.7 26.3 349 38-462 327-704 (1080)
87 KOG0316 Conserved WD40 repeat- 99.9 3.8E-26 8.3E-31 182.0 20.4 227 113-462 18-248 (307)
88 KOG2096 WD40 repeat protein [G 99.9 1.7E-25 3.6E-30 186.2 24.8 317 31-428 82-402 (420)
89 KOG2919 Guanine nucleotide-bin 99.9 1.4E-25 3E-30 187.0 23.3 310 36-468 50-367 (406)
90 PTZ00421 coronin; Provisional 99.9 4.1E-25 9E-30 209.4 30.0 220 31-380 71-299 (493)
91 KOG0294 WD40 repeat-containing 99.9 5.4E-25 1.2E-29 183.0 26.1 273 14-452 28-308 (362)
92 KOG0643 Translation initiation 99.9 6.2E-25 1.3E-29 178.4 25.7 285 95-463 5-309 (327)
93 KOG2055 WD40 repeat protein [G 99.9 2.2E-25 4.8E-30 194.3 24.6 293 35-428 213-512 (514)
94 KOG0264 Nucleosome remodeling 99.9 2.5E-25 5.3E-30 194.0 24.6 272 98-428 110-404 (422)
95 KOG1539 WD repeat protein [Gen 99.9 1.6E-25 3.5E-30 208.6 24.2 376 31-468 239-645 (910)
96 KOG0308 Conserved WD40 repeat- 99.9 5.6E-26 1.2E-30 206.0 20.2 283 33-455 19-311 (735)
97 KOG0283 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 210.3 22.7 298 111-468 266-573 (712)
98 KOG0278 Serine/threonine kinas 99.9 1.9E-26 4.1E-31 185.4 14.4 245 30-432 54-301 (334)
99 KOG0310 Conserved WD40 repeat- 99.9 3.2E-25 7E-30 194.8 22.6 242 34-370 67-309 (487)
100 KOG0301 Phospholipase A2-activ 99.9 1.2E-24 2.5E-29 199.0 25.1 277 30-428 9-288 (745)
101 KOG0641 WD40 repeat protein [G 99.9 9.6E-24 2.1E-28 167.4 26.7 259 32-370 86-349 (350)
102 KOG0772 Uncharacterized conser 99.9 3.2E-25 6.9E-30 195.9 20.2 261 34-426 213-485 (641)
103 KOG0269 WD40 repeat-containing 99.9 8.7E-26 1.9E-30 208.7 17.3 245 38-430 90-342 (839)
104 KOG4328 WD40 protein [Function 99.9 1.1E-24 2.4E-29 189.8 22.4 292 33-461 184-484 (498)
105 KOG0264 Nucleosome remodeling 99.9 5.5E-25 1.2E-29 191.8 20.5 275 31-370 120-404 (422)
106 KOG1274 WD40 repeat protein [G 99.9 6.2E-24 1.4E-28 200.3 28.8 278 32-460 10-289 (933)
107 KOG0288 WD40 repeat protein Ti 99.9 2.4E-25 5.2E-30 191.4 17.5 241 33-426 217-459 (459)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-23 1E-27 188.8 34.1 293 47-451 1-300 (300)
109 KOG0973 Histone transcription 99.9 1E-24 2.3E-29 209.6 23.7 269 32-430 66-357 (942)
110 KOG2048 WD40 repeat protein [G 99.9 7.4E-23 1.6E-27 186.9 34.1 352 35-460 25-536 (691)
111 KOG2096 WD40 repeat protein [G 99.9 1.8E-24 4E-29 180.0 21.7 306 93-461 79-393 (420)
112 KOG0305 Anaphase promoting com 99.9 2.3E-24 4.9E-29 196.8 24.1 270 116-468 181-458 (484)
113 KOG0289 mRNA splicing factor [ 99.9 8.7E-24 1.9E-28 183.0 25.7 247 30-427 256-505 (506)
114 KOG0639 Transducin-like enhanc 99.9 9.8E-25 2.1E-29 192.2 20.1 288 30-427 414-703 (705)
115 KOG0301 Phospholipase A2-activ 99.9 2.9E-24 6.3E-29 196.4 23.7 283 88-467 2-285 (745)
116 KOG0268 Sof1-like rRNA process 99.9 1.3E-25 2.7E-30 190.0 12.8 285 92-469 58-343 (433)
117 KOG0275 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 181.8 16.9 246 31-426 259-507 (508)
118 PTZ00420 coronin; Provisional 99.9 4.9E-23 1.1E-27 196.1 30.3 227 202-464 51-286 (568)
119 KOG0650 WD40 repeat nucleolar 99.9 1.1E-23 2.3E-28 189.6 24.1 321 21-463 386-727 (733)
120 KOG2445 Nuclear pore complex c 99.9 6.3E-23 1.4E-27 170.1 24.8 280 30-371 8-319 (361)
121 KOG0308 Conserved WD40 repeat- 99.9 2.2E-24 4.7E-29 195.8 17.6 240 197-468 39-282 (735)
122 KOG1273 WD40 repeat protein [G 99.9 6.1E-23 1.3E-27 170.7 24.1 289 38-429 26-323 (405)
123 KOG0274 Cdc4 and related F-box 99.9 1.1E-23 2.4E-28 199.9 22.2 261 16-382 232-493 (537)
124 KOG0640 mRNA cleavage stimulat 99.9 7.5E-24 1.6E-28 175.7 18.0 253 32-428 169-426 (430)
125 KOG0299 U3 snoRNP-associated p 99.9 2.6E-23 5.6E-28 181.5 22.1 241 33-417 200-444 (479)
126 KOG0647 mRNA export protein (c 99.9 9.1E-23 2E-27 168.8 23.2 257 16-417 54-312 (347)
127 KOG0300 WD40 repeat-containing 99.9 2E-23 4.3E-28 173.8 19.3 280 15-430 173-478 (481)
128 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-22 2.3E-27 179.2 24.4 263 113-453 35-305 (673)
129 KOG0302 Ribosome Assembly prot 99.9 6.5E-23 1.4E-27 174.6 22.2 269 30-426 146-436 (440)
130 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.8E-28 185.2 17.6 281 106-463 413-696 (705)
131 KOG0321 WD40 repeat-containing 99.9 1.9E-22 4.2E-27 182.9 24.9 309 39-431 53-394 (720)
132 KOG1063 RNA polymerase II elon 99.9 1.8E-22 3.8E-27 184.8 24.5 331 32-453 264-676 (764)
133 KOG2106 Uncharacterized conser 99.9 7.1E-22 1.5E-26 174.4 27.3 349 33-459 244-614 (626)
134 KOG0269 WD40 repeat-containing 99.9 5.1E-23 1.1E-27 190.6 20.9 283 35-459 39-327 (839)
135 KOG1446 Histone H3 (Lys4) meth 99.9 1.7E-21 3.6E-26 162.8 25.4 244 36-370 57-303 (311)
136 KOG0646 WD40 repeat protein [G 99.9 2.6E-22 5.7E-27 175.6 21.3 238 32-385 78-321 (476)
137 KOG1539 WD repeat protein [Gen 99.9 2.8E-21 6E-26 180.7 27.6 337 32-472 157-608 (910)
138 KOG0267 Microtubule severing p 99.9 1.1E-23 2.3E-28 193.6 10.5 188 230-459 67-256 (825)
139 KOG0294 WD40 repeat-containing 99.9 2E-21 4.4E-26 161.8 22.5 253 49-450 3-258 (362)
140 KOG0302 Ribosome Assembly prot 99.9 7.1E-22 1.5E-26 168.3 20.0 198 230-461 208-428 (440)
141 KOG0646 WD40 repeat protein [G 99.9 6.9E-22 1.5E-26 173.0 19.8 266 127-458 51-336 (476)
142 KOG1332 Vesicle coat complex C 99.9 5.1E-22 1.1E-26 159.5 17.1 250 113-429 12-287 (299)
143 KOG1036 Mitotic spindle checkp 99.9 5E-21 1.1E-25 159.2 22.9 244 30-418 49-294 (323)
144 KOG0267 Microtubule severing p 99.9 2.2E-23 4.8E-28 191.6 9.5 234 31-361 24-258 (825)
145 KOG2055 WD40 repeat protein [G 99.9 2.3E-21 5E-26 169.4 20.9 276 113-461 214-502 (514)
146 KOG1445 Tumor-specific antigen 99.9 5.4E-21 1.2E-25 173.5 22.6 160 284-468 629-791 (1012)
147 KOG4283 Transcription-coupled 99.9 4.2E-21 9E-26 158.5 19.1 231 113-432 44-280 (397)
148 KOG2048 WD40 repeat protein [G 99.9 5.7E-20 1.2E-24 168.2 27.7 272 113-452 26-302 (691)
149 KOG1009 Chromatin assembly com 99.9 6.4E-21 1.4E-25 164.2 19.8 330 35-463 13-364 (434)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.1E-19 6.6E-24 163.5 30.2 254 35-383 30-291 (300)
151 KOG0307 Vesicle coat complex C 99.9 2E-21 4.3E-26 188.1 15.3 194 230-459 113-314 (1049)
152 KOG1188 WD40 repeat protein [G 99.9 1.6E-20 3.6E-25 158.2 18.4 195 48-371 41-243 (376)
153 KOG0270 WD40 repeat-containing 99.9 2.2E-20 4.7E-25 162.7 19.3 268 37-433 175-454 (463)
154 KOG1517 Guanine nucleotide bin 99.9 1E-19 2.2E-24 174.4 24.2 312 37-431 1066-1384(1387)
155 KOG0307 Vesicle coat complex C 99.9 6.3E-21 1.4E-25 184.7 15.4 263 27-431 56-330 (1049)
156 KOG2445 Nuclear pore complex c 99.9 2.2E-19 4.7E-24 149.3 22.0 259 113-428 14-318 (361)
157 KOG4378 Nuclear protein COP1 [ 99.9 6.8E-20 1.5E-24 161.7 19.0 289 13-410 13-305 (673)
158 KOG1273 WD40 repeat protein [G 99.8 1.9E-19 4E-24 150.2 20.1 290 115-468 26-320 (405)
159 KOG0322 G-protein beta subunit 99.8 1.9E-19 4.1E-24 146.5 19.2 299 33-427 12-322 (323)
160 KOG0303 Actin-binding protein 99.8 1.3E-18 2.9E-23 149.4 24.4 297 18-454 10-322 (472)
161 KOG1034 Transcriptional repres 99.8 1.5E-19 3.2E-24 151.6 18.1 224 230-463 132-375 (385)
162 KOG1007 WD repeat protein TSSC 99.8 5.6E-19 1.2E-23 145.6 21.0 275 30-428 58-361 (370)
163 KOG1538 Uncharacterized conser 99.8 8.8E-19 1.9E-23 160.2 23.4 275 37-429 14-294 (1081)
164 KOG0321 WD40 repeat-containing 99.8 2.6E-19 5.7E-24 162.8 19.7 282 31-371 96-392 (720)
165 KOG1034 Transcriptional repres 99.8 2E-19 4.4E-24 150.8 16.9 266 33-428 87-383 (385)
166 KOG0290 Conserved WD40 repeat- 99.8 1.3E-18 2.8E-23 143.6 20.9 189 231-454 148-348 (364)
167 KOG4227 WD40 repeat protein [G 99.8 1.8E-18 3.8E-23 148.5 22.2 310 30-468 51-384 (609)
168 KOG1587 Cytoplasmic dynein int 99.8 1.6E-18 3.4E-23 163.5 24.0 287 13-370 223-516 (555)
169 KOG0270 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 152.0 18.0 226 195-461 192-438 (463)
170 KOG0642 Cell-cycle nuclear pro 99.8 6.9E-19 1.5E-23 158.0 16.3 281 31-440 290-572 (577)
171 PRK11028 6-phosphogluconolacto 99.8 2.6E-16 5.5E-21 145.5 34.2 261 113-428 35-304 (330)
172 KOG1274 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 157.4 25.3 245 30-425 50-297 (933)
173 KOG0649 WD40 repeat protein [G 99.8 4.1E-17 8.9E-22 131.4 23.6 262 36-428 11-274 (325)
174 KOG1007 WD repeat protein TSSC 99.8 2E-17 4.4E-22 136.5 22.2 195 231-459 121-348 (370)
175 KOG1524 WD40 repeat-containing 99.8 8.7E-18 1.9E-22 150.0 19.3 273 33-426 12-284 (737)
176 KOG4328 WD40 protein [Function 99.8 8.2E-18 1.8E-22 147.3 17.3 238 112-461 186-440 (498)
177 KOG0650 WD40 repeat nucleolar 99.8 4.8E-18 1E-22 153.5 15.7 264 113-463 401-672 (733)
178 KOG1334 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 149.1 16.0 306 32-470 139-465 (559)
179 PRK01742 tolB translocation pr 99.8 3.8E-17 8.2E-22 155.6 21.6 169 238-453 252-427 (429)
180 KOG1587 Cytoplasmic dynein int 99.8 2.3E-16 5E-21 149.0 25.8 263 113-430 243-518 (555)
181 KOG0290 Conserved WD40 repeat- 99.8 1.2E-16 2.6E-21 132.1 20.4 256 31-367 92-362 (364)
182 KOG0771 Prolactin regulatory e 99.8 3E-16 6.4E-21 136.6 22.5 190 237-461 148-344 (398)
183 KOG1240 Protein kinase contain 99.8 2.9E-16 6.4E-21 153.4 24.9 300 5-371 1022-1335(1431)
184 KOG0644 Uncharacterized conser 99.8 8.9E-18 1.9E-22 157.4 13.6 283 31-431 186-471 (1113)
185 PRK11028 6-phosphogluconolacto 99.8 1.9E-15 4.2E-20 139.7 28.6 274 129-461 5-293 (330)
186 KOG0303 Actin-binding protein 99.8 5.7E-17 1.2E-21 139.5 16.7 226 31-327 77-308 (472)
187 COG2319 FOG: WD40 repeat [Gene 99.8 2.1E-14 4.7E-19 138.4 37.1 316 31-459 61-386 (466)
188 KOG1445 Tumor-specific antigen 99.7 6.3E-17 1.4E-21 147.4 17.5 269 44-451 588-869 (1012)
189 KOG1009 Chromatin assembly com 99.7 5.3E-16 1.1E-20 134.2 22.1 303 11-432 35-376 (434)
190 KOG0322 G-protein beta subunit 99.7 1.5E-16 3.3E-21 129.8 17.2 285 113-461 15-313 (323)
191 KOG1963 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 141.2 28.8 299 40-431 21-325 (792)
192 KOG1240 Protein kinase contain 99.7 7.5E-16 1.6E-20 150.6 24.5 289 85-432 1033-1338(1431)
193 KOG1310 WD40 repeat protein [G 99.7 1.5E-16 3.2E-21 142.7 17.9 242 29-371 44-304 (758)
194 KOG2919 Guanine nucleotide-bin 99.7 8.2E-16 1.8E-20 129.2 20.3 247 33-364 102-363 (406)
195 KOG2110 Uncharacterized conser 99.7 5.1E-14 1.1E-18 120.7 30.8 238 35-371 5-249 (391)
196 KOG1538 Uncharacterized conser 99.7 2.3E-16 5.1E-21 144.6 17.8 265 114-462 14-284 (1081)
197 KOG1517 Guanine nucleotide bin 99.7 1.1E-15 2.3E-20 147.3 23.0 297 115-468 1067-1378(1387)
198 KOG1523 Actin-related protein 99.7 2E-15 4.3E-20 126.8 21.5 232 35-380 10-246 (361)
199 KOG1963 WD40 repeat protein [G 99.7 2.3E-15 5E-20 142.7 24.3 318 31-429 201-539 (792)
200 KOG0642 Cell-cycle nuclear pro 99.7 1.3E-16 2.9E-21 143.5 14.2 214 229-468 340-558 (577)
201 KOG4497 Uncharacterized conser 99.7 2.2E-15 4.8E-20 126.9 18.7 316 35-457 48-418 (447)
202 KOG2139 WD40 repeat protein [G 99.7 1.6E-14 3.4E-19 123.4 23.4 298 35-458 98-415 (445)
203 COG2319 FOG: WD40 repeat [Gene 99.7 1.3E-13 2.9E-18 132.9 32.9 287 30-429 150-443 (466)
204 PRK03629 tolB translocation pr 99.7 2.8E-14 6.2E-19 135.6 27.2 168 238-452 247-428 (429)
205 KOG4497 Uncharacterized conser 99.7 1.4E-15 3.1E-20 128.0 15.6 308 40-459 13-379 (447)
206 KOG1524 WD40 repeat-containing 99.7 5.2E-15 1.1E-19 132.6 17.6 200 195-461 75-276 (737)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 2.2E-15 4.9E-20 134.9 14.5 189 242-451 182-384 (636)
208 KOG0649 WD40 repeat protein [G 99.7 2.4E-14 5.2E-19 115.7 18.7 234 176-452 15-257 (325)
209 KOG1523 Actin-related protein 99.6 1.6E-14 3.4E-19 121.4 16.7 245 175-457 14-265 (361)
210 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.5E-19 130.7 16.4 249 93-437 43-312 (758)
211 KOG2321 WD40 repeat protein [G 99.6 1E-13 2.3E-18 125.4 22.5 292 28-429 44-344 (703)
212 KOG0644 Uncharacterized conser 99.6 1.5E-15 3.2E-20 142.8 10.5 265 113-461 191-458 (1113)
213 PRK01742 tolB translocation pr 99.6 3.2E-14 6.9E-19 135.6 19.9 217 32-409 200-426 (429)
214 KOG1272 WD40-repeat-containing 99.6 5.4E-15 1.2E-19 130.2 12.6 302 2-421 88-402 (545)
215 PRK02889 tolB translocation pr 99.6 2E-13 4.3E-18 130.0 24.1 171 237-452 243-425 (427)
216 PRK04922 tolB translocation pr 99.6 2.4E-13 5.3E-18 129.9 24.3 167 238-451 252-432 (433)
217 KOG1188 WD40 repeat protein [G 99.6 4.1E-14 8.8E-19 120.0 15.7 191 197-432 42-246 (376)
218 KOG0771 Prolactin regulatory e 99.6 3.4E-14 7.4E-19 124.0 15.6 206 39-314 148-355 (398)
219 PRK05137 tolB translocation pr 99.6 9.4E-13 2E-17 126.0 27.2 169 236-452 248-433 (435)
220 KOG2111 Uncharacterized conser 99.6 1.7E-12 3.7E-17 109.3 25.0 181 205-430 75-258 (346)
221 PF08662 eIF2A: Eukaryotic tra 99.6 1E-13 2.2E-18 115.9 17.6 151 237-432 9-182 (194)
222 KOG3881 Uncharacterized conser 99.6 1.4E-13 3E-18 118.9 18.6 280 113-454 56-344 (412)
223 PF10282 Lactonase: Lactonase, 99.6 5.1E-11 1.1E-15 110.2 37.3 286 113-449 37-345 (345)
224 KOG2110 Uncharacterized conser 99.6 1E-12 2.2E-17 112.9 22.8 159 234-430 88-250 (391)
225 KOG2111 Uncharacterized conser 99.6 1.3E-11 2.9E-16 104.1 27.4 115 236-371 139-257 (346)
226 KOG4227 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 116.9 17.3 290 14-370 80-387 (609)
227 COG2706 3-carboxymuconate cycl 99.6 9.3E-11 2E-15 101.3 31.7 295 11-429 15-322 (346)
228 PF02239 Cytochrom_D1: Cytochr 99.6 6.4E-12 1.4E-16 115.9 26.7 297 48-438 6-356 (369)
229 KOG1272 WD40-repeat-containing 99.5 1.3E-14 2.7E-19 127.9 7.9 218 172-455 130-348 (545)
230 PRK03629 tolB translocation pr 99.5 1.7E-12 3.6E-17 123.5 22.5 207 33-385 196-419 (429)
231 KOG3881 Uncharacterized conser 99.5 1.2E-12 2.7E-17 113.2 19.1 264 31-380 51-329 (412)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 7.2E-13 1.5E-17 119.1 16.9 175 113-317 220-456 (636)
233 KOG2315 Predicted translation 99.5 2.5E-11 5.5E-16 110.1 26.6 338 13-430 12-392 (566)
234 KOG2321 WD40 repeat protein [G 99.5 3.6E-12 7.9E-17 115.6 21.0 282 106-461 45-333 (703)
235 PRK02889 tolB translocation pr 99.5 1.5E-12 3.3E-17 124.0 19.9 189 231-464 193-393 (427)
236 PRK05137 tolB translocation pr 99.5 5.1E-12 1.1E-16 121.0 22.5 184 231-461 199-396 (435)
237 PF10282 Lactonase: Lactonase, 99.5 2.7E-10 5.9E-15 105.4 32.3 302 12-378 13-330 (345)
238 PRK04922 tolB translocation pr 99.5 3.2E-12 6.9E-17 122.2 20.0 187 230-462 200-399 (433)
239 PRK04792 tolB translocation pr 99.5 3.6E-11 7.8E-16 114.9 25.7 167 238-451 266-446 (448)
240 PF02239 Cytochrom_D1: Cytochr 99.5 4E-11 8.7E-16 110.6 25.0 281 127-461 6-335 (369)
241 PF08662 eIF2A: Eukaryotic tra 99.5 4.3E-12 9.4E-17 106.1 16.6 116 233-380 59-187 (194)
242 TIGR02800 propeller_TolB tol-p 99.5 4.5E-11 9.7E-16 114.7 26.0 147 237-428 237-397 (417)
243 PRK00178 tolB translocation pr 99.4 7.6E-11 1.7E-15 113.2 26.4 168 238-452 247-428 (430)
244 KOG2139 WD40 repeat protein [G 99.4 5.3E-12 1.1E-16 108.2 16.1 198 234-461 99-300 (445)
245 KOG2315 Predicted translation 99.4 4.3E-11 9.2E-16 108.7 21.9 290 37-380 75-398 (566)
246 KOG0974 WD-repeat protein WDR6 99.4 2.2E-11 4.7E-16 118.3 18.8 188 197-430 101-290 (967)
247 COG5354 Uncharacterized protei 99.4 2.6E-10 5.7E-15 102.4 24.2 136 280-461 272-419 (561)
248 COG2706 3-carboxymuconate cycl 99.4 1.6E-09 3.5E-14 93.8 27.3 272 135-461 15-310 (346)
249 KOG2041 WD40 repeat protein [G 99.4 7.7E-11 1.7E-15 109.9 19.3 296 32-459 11-326 (1189)
250 PRK01029 tolB translocation pr 99.4 3.8E-10 8.2E-15 107.0 24.6 178 234-453 231-426 (428)
251 TIGR02800 propeller_TolB tol-p 99.4 1.6E-10 3.4E-15 110.9 22.0 184 234-464 190-387 (417)
252 PRK01029 tolB translocation pr 99.3 9.3E-10 2E-14 104.4 25.7 202 113-371 185-404 (428)
253 KOG1409 Uncharacterized conser 99.3 1.5E-10 3.4E-15 98.8 17.3 238 33-316 22-273 (404)
254 KOG0280 Uncharacterized conser 99.3 8.8E-10 1.9E-14 92.3 21.1 251 113-431 70-336 (339)
255 KOG1334 WD40 repeat protein [G 99.3 3.5E-11 7.6E-16 107.2 12.6 291 14-430 166-468 (559)
256 KOG2314 Translation initiation 99.3 2.1E-09 4.5E-14 97.7 23.5 326 39-483 214-576 (698)
257 COG4946 Uncharacterized protei 99.3 3.6E-08 7.7E-13 88.3 30.6 144 280-459 357-506 (668)
258 KOG4547 WD40 repeat-containing 99.3 4.4E-10 9.5E-15 103.0 18.5 146 244-429 69-221 (541)
259 PRK04792 tolB translocation pr 99.3 5.2E-10 1.1E-14 107.0 18.8 186 231-463 215-414 (448)
260 PRK00178 tolB translocation pr 99.2 9.5E-10 2.1E-14 105.7 20.3 186 231-463 196-395 (430)
261 KOG1354 Serine/threonine prote 99.2 3.2E-09 6.9E-14 90.9 18.8 305 113-465 26-353 (433)
262 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.7E-07 1E-11 81.9 33.2 254 120-437 53-338 (352)
263 KOG4547 WD40 repeat-containing 99.2 1.2E-08 2.5E-13 93.8 22.7 141 197-371 72-221 (541)
264 KOG2314 Translation initiation 99.2 2.9E-08 6.3E-13 90.5 24.2 315 31-455 246-596 (698)
265 KOG1064 RAVE (regulator of V-A 99.2 5.5E-10 1.2E-14 114.4 14.4 232 30-362 2203-2438(2439)
266 PF04762 IKI3: IKI3 family; I 99.2 7E-08 1.5E-12 99.2 29.6 315 34-429 74-457 (928)
267 PF04762 IKI3: IKI3 family; I 99.1 2.2E-07 4.9E-12 95.6 33.0 345 35-429 120-520 (928)
268 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.1E-07 2.4E-12 85.9 27.1 256 43-379 53-338 (352)
269 COG5354 Uncharacterized protei 99.1 1.7E-08 3.7E-13 91.1 21.1 277 36-370 72-395 (561)
270 KOG0280 Uncharacterized conser 99.1 4.6E-09 9.9E-14 88.1 15.9 214 197-449 87-309 (339)
271 PF15492 Nbas_N: Neuroblastoma 99.1 8.6E-08 1.9E-12 80.8 22.2 226 198-439 11-269 (282)
272 KOG0974 WD-repeat protein WDR6 99.1 4.4E-09 9.6E-14 102.7 15.7 190 125-371 98-289 (967)
273 PLN02919 haloacid dehalogenase 99.1 3.6E-07 7.7E-12 96.0 30.5 291 117-432 572-892 (1057)
274 KOG1912 WD40 repeat protein [G 99.1 3.1E-08 6.6E-13 93.9 19.9 83 33-150 53-149 (1062)
275 KOG2041 WD40 repeat protein [G 99.0 6.7E-08 1.4E-12 90.9 20.3 249 32-370 68-337 (1189)
276 KOG4532 WD40-like repeat conta 99.0 2.4E-07 5.3E-12 76.9 20.9 242 126-429 84-332 (344)
277 PRK04043 tolB translocation pr 99.0 6.4E-08 1.4E-12 91.3 19.7 180 235-462 189-388 (419)
278 KOG1409 Uncharacterized conser 99.0 1.8E-08 4E-13 86.4 14.2 255 91-430 15-272 (404)
279 COG4946 Uncharacterized protei 99.0 4.2E-07 9E-12 81.6 22.6 144 231-417 357-507 (668)
280 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.3E-12 78.1 18.1 254 39-370 71-331 (344)
281 PLN02919 haloacid dehalogenase 99.0 8.7E-07 1.9E-11 93.2 28.4 238 115-374 626-891 (1057)
282 PRK04043 tolB translocation pr 98.9 4.4E-07 9.6E-12 85.7 23.7 152 234-432 233-404 (419)
283 KOG0309 Conserved WD40 repeat- 98.9 1E-08 2.2E-13 96.5 12.1 304 33-430 22-341 (1081)
284 KOG1064 RAVE (regulator of V-A 98.9 1.4E-08 3.1E-13 104.5 13.8 195 113-381 2209-2408(2439)
285 COG5170 CDC55 Serine/threonine 98.9 2.8E-08 6.2E-13 84.0 12.2 312 113-465 27-361 (460)
286 KOG0309 Conserved WD40 repeat- 98.9 1.6E-08 3.5E-13 95.2 10.9 224 176-454 29-258 (1081)
287 KOG0882 Cyclophilin-related pe 98.9 3.3E-07 7.2E-12 81.7 17.9 319 32-425 6-369 (558)
288 KOG2695 WD40 repeat protein [G 98.9 2.2E-08 4.7E-13 86.0 10.2 160 245-442 225-389 (425)
289 KOG4190 Uncharacterized conser 98.8 2.4E-08 5.2E-13 91.0 10.1 204 193-432 745-952 (1034)
290 KOG3914 WD repeat protein WDR4 98.8 1.5E-07 3.2E-12 82.8 13.6 156 237-432 66-227 (390)
291 PF07433 DUF1513: Protein of u 98.8 1.6E-05 3.5E-10 69.5 25.7 244 113-422 5-279 (305)
292 TIGR03300 assembly_YfgL outer 98.8 5.5E-06 1.2E-10 78.3 24.8 280 47-442 65-351 (377)
293 PF08450 SGL: SMP-30/Gluconola 98.8 4.3E-05 9.4E-10 67.4 28.7 181 236-454 42-238 (246)
294 KOG3914 WD repeat protein WDR4 98.7 3.4E-07 7.4E-12 80.5 13.4 155 197-383 76-235 (390)
295 KOG1912 WD40 repeat protein [G 98.7 3.1E-06 6.7E-11 80.8 20.4 257 35-429 15-305 (1062)
296 PF15492 Nbas_N: Neuroblastoma 98.7 8.1E-06 1.8E-10 69.1 20.7 36 281-317 228-263 (282)
297 PF08450 SGL: SMP-30/Gluconola 98.7 5.5E-05 1.2E-09 66.7 27.5 147 234-416 86-243 (246)
298 KOG4190 Uncharacterized conser 98.7 8.5E-08 1.8E-12 87.5 8.8 216 30-316 730-951 (1034)
299 KOG4714 Nucleoporin [Nuclear s 98.7 1.2E-06 2.6E-11 72.6 14.3 144 197-370 103-254 (319)
300 KOG0882 Cyclophilin-related pe 98.7 1E-06 2.2E-11 78.7 14.7 280 108-432 5-309 (558)
301 KOG4714 Nucleoporin [Nuclear s 98.6 1.9E-07 4.1E-12 77.2 9.2 105 3-145 150-255 (319)
302 KOG1920 IkappaB kinase complex 98.6 4.5E-05 9.8E-10 76.9 24.5 216 36-316 69-325 (1265)
303 TIGR03300 assembly_YfgL outer 98.5 5.5E-05 1.2E-09 71.5 24.0 134 245-425 241-376 (377)
304 PF00400 WD40: WD domain, G-be 98.5 2.3E-07 4.9E-12 55.1 4.5 33 31-63 7-39 (39)
305 PF00400 WD40: WD domain, G-be 98.5 3.1E-07 6.6E-12 54.5 4.8 38 374-426 2-39 (39)
306 PF07433 DUF1513: Protein of u 98.5 0.00016 3.4E-09 63.5 23.1 253 36-367 5-282 (305)
307 KOG2695 WD40 repeat protein [G 98.4 1.6E-06 3.4E-11 74.9 9.9 136 232-384 251-389 (425)
308 PF11768 DUF3312: Protein of u 98.4 0.00056 1.2E-08 64.3 27.0 73 280-371 257-330 (545)
309 PF08596 Lgl_C: Lethal giant l 98.4 0.0001 2.2E-09 68.7 22.2 289 37-369 3-334 (395)
310 PF13360 PQQ_2: PQQ-like domai 98.4 0.00046 9.9E-09 60.6 24.9 229 135-432 2-234 (238)
311 KOG2114 Vacuolar assembly/sort 98.4 8.2E-05 1.8E-09 72.4 20.3 206 197-442 37-257 (933)
312 KOG2066 Vacuolar assembly/sort 98.4 3.6E-05 7.8E-10 74.2 17.5 197 32-314 36-234 (846)
313 KOG2114 Vacuolar assembly/sort 98.4 0.00014 3.1E-09 70.8 21.6 233 15-318 4-248 (933)
314 KOG1645 RING-finger-containing 98.4 0.00012 2.5E-09 65.0 19.2 252 113-429 194-462 (463)
315 KOG1832 HIV-1 Vpr-binding prot 98.3 6.2E-07 1.3E-11 86.7 5.7 217 32-414 1098-1317(1516)
316 KOG2066 Vacuolar assembly/sort 98.3 3.8E-05 8.3E-10 74.0 16.7 182 193-428 47-233 (846)
317 KOG1832 HIV-1 Vpr-binding prot 98.3 1.1E-06 2.3E-11 85.1 6.1 153 230-432 1140-1295(1516)
318 PF11768 DUF3312: Protein of u 98.2 1.3E-05 2.7E-10 74.9 11.3 93 17-148 241-333 (545)
319 PF06977 SdiA-regulated: SdiA- 98.2 0.0012 2.5E-08 57.2 22.3 219 113-367 22-247 (248)
320 KOG1008 Uncharacterized conser 98.2 5E-06 1.1E-10 77.8 7.6 291 113-457 57-359 (783)
321 PRK11138 outer membrane biogen 98.2 0.0011 2.4E-08 62.9 23.3 229 126-432 120-357 (394)
322 COG0823 TolB Periplasmic compo 98.1 4.7E-05 1E-09 71.7 13.5 184 234-460 193-388 (425)
323 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0017 3.6E-08 60.6 23.6 313 44-458 1-344 (353)
324 PRK11138 outer membrane biogen 98.1 0.0029 6.4E-08 60.1 25.3 137 245-427 256-393 (394)
325 KOG1920 IkappaB kinase complex 98.0 0.00094 2E-08 67.9 20.7 269 113-459 69-352 (1265)
326 KOG1275 PAB-dependent poly(A) 98.0 0.00016 3.5E-09 70.9 14.3 184 126-369 147-341 (1118)
327 KOG3617 WD40 and TPR repeat-co 97.9 0.00082 1.8E-08 65.6 17.2 195 35-314 14-221 (1416)
328 PRK02888 nitrous-oxide reducta 97.9 0.0059 1.3E-07 59.2 22.9 116 241-371 284-405 (635)
329 PF04053 Coatomer_WDAD: Coatom 97.9 0.0012 2.6E-08 62.6 18.0 173 234-462 33-215 (443)
330 PF08596 Lgl_C: Lethal giant l 97.8 0.0033 7.1E-08 58.8 19.6 201 230-459 83-324 (395)
331 KOG1275 PAB-dependent poly(A) 97.8 0.00029 6.4E-09 69.1 12.9 143 243-426 185-340 (1118)
332 KOG3621 WD40 repeat-containing 97.8 0.00032 6.9E-09 67.0 12.6 121 233-371 33-155 (726)
333 PF06433 Me-amine-dh_H: Methyl 97.8 0.021 4.5E-07 51.2 25.2 265 118-438 41-329 (342)
334 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.019 4E-07 53.7 23.5 98 340-439 306-408 (415)
335 PF13360 PQQ_2: PQQ-like domai 97.8 0.0061 1.3E-07 53.4 20.0 193 126-376 36-235 (238)
336 PF14583 Pectate_lyase22: Olig 97.8 0.027 5.8E-07 51.5 23.4 166 234-428 188-381 (386)
337 COG0823 TolB Periplasmic compo 97.8 0.0024 5.3E-08 60.3 17.3 139 237-418 241-389 (425)
338 PF04053 Coatomer_WDAD: Coatom 97.8 0.011 2.3E-07 56.3 21.5 199 172-453 33-244 (443)
339 KOG1008 Uncharacterized conser 97.7 1.6E-05 3.4E-10 74.6 2.2 189 234-457 57-259 (783)
340 PF06433 Me-amine-dh_H: Methyl 97.7 0.034 7.3E-07 49.9 23.7 266 37-382 37-331 (342)
341 PF08553 VID27: VID27 cytoplas 97.7 0.0077 1.7E-07 60.6 20.4 102 248-370 545-647 (794)
342 KOG3621 WD40 repeat-containing 97.7 0.00052 1.1E-08 65.6 11.1 122 282-429 33-155 (726)
343 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.032 7E-07 52.1 22.0 149 233-417 183-346 (353)
344 PF14583 Pectate_lyase22: Olig 97.6 0.054 1.2E-06 49.6 22.2 148 282-462 187-371 (386)
345 KOG3617 WD40 and TPR repeat-co 97.6 0.0022 4.8E-08 62.8 14.0 74 34-144 58-131 (1416)
346 PRK02888 nitrous-oxide reducta 97.5 0.0051 1.1E-07 59.6 15.4 71 342-429 321-405 (635)
347 KOG1645 RING-finger-containing 97.5 0.00048 1E-08 61.3 7.6 87 278-381 189-277 (463)
348 KOG4640 Anaphase-promoting com 97.4 0.0007 1.5E-08 63.9 8.8 94 342-451 21-115 (665)
349 PF04841 Vps16_N: Vps16, N-ter 97.4 0.12 2.6E-06 49.2 24.5 40 342-382 217-257 (410)
350 PF06977 SdiA-regulated: SdiA- 97.4 0.048 1E-06 47.4 19.4 213 176-425 26-247 (248)
351 PF04841 Vps16_N: Vps16, N-ter 97.4 0.094 2E-06 49.8 22.2 189 234-453 81-271 (410)
352 smart00320 WD40 WD40 repeats. 97.3 0.00048 1E-08 39.9 3.9 31 33-63 10-40 (40)
353 COG3490 Uncharacterized protei 97.2 0.11 2.4E-06 44.8 19.0 248 117-428 72-348 (366)
354 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.031 6.8E-07 41.0 12.8 67 285-370 2-71 (111)
355 PF00780 CNH: CNH domain; Int 97.1 0.21 4.5E-06 44.9 21.2 152 194-371 6-166 (275)
356 cd00216 PQQ_DH Dehydrogenases 97.1 0.35 7.5E-06 47.4 25.9 29 409-438 405-433 (488)
357 smart00320 WD40 WD40 repeats. 97.0 0.0019 4E-08 37.2 5.0 26 401-426 15-40 (40)
358 KOG2395 Protein involved in va 97.0 0.076 1.6E-06 49.8 17.0 100 250-370 399-500 (644)
359 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0028 6E-08 38.6 5.3 32 34-65 10-41 (47)
360 COG3490 Uncharacterized protei 97.0 0.043 9.4E-07 47.2 13.9 165 240-432 120-314 (366)
361 COG3386 Gluconolactonase [Carb 97.0 0.21 4.5E-06 45.1 19.3 94 342-452 163-265 (307)
362 PF03178 CPSF_A: CPSF A subuni 97.0 0.08 1.7E-06 48.8 17.3 136 254-428 62-202 (321)
363 COG3391 Uncharacterized conser 97.0 0.14 3E-06 48.3 19.1 181 236-459 76-270 (381)
364 KOG4640 Anaphase-promoting com 96.9 0.0068 1.5E-07 57.6 9.2 75 234-318 21-97 (665)
365 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.11 2.5E-06 38.1 14.1 63 234-308 43-109 (111)
366 KOG1897 Damage-specific DNA bi 96.8 0.71 1.5E-05 47.1 26.5 177 245-459 684-886 (1096)
367 KOG2079 Vacuolar assembly/sort 96.8 0.0076 1.7E-07 60.9 9.6 102 296-427 100-202 (1206)
368 KOG2395 Protein involved in va 96.8 0.041 8.8E-07 51.5 13.2 58 197-262 443-500 (644)
369 PF03178 CPSF_A: CPSF A subuni 96.8 0.44 9.6E-06 43.9 22.4 114 233-370 88-202 (321)
370 PF08553 VID27: VID27 cytoplas 96.7 0.12 2.7E-06 52.3 17.4 134 296-459 494-636 (794)
371 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0094 2E-07 36.3 5.1 31 113-145 12-42 (47)
372 PF00780 CNH: CNH domain; Int 96.4 0.64 1.4E-05 41.7 24.8 124 234-383 139-267 (275)
373 COG3391 Uncharacterized conser 96.4 0.86 1.9E-05 43.1 27.3 225 174-457 76-314 (381)
374 COG3204 Uncharacterized protei 96.4 0.6 1.3E-05 40.8 19.1 180 176-384 90-275 (316)
375 PRK13616 lipoprotein LpqB; Pro 96.3 0.46 9.9E-06 47.4 18.5 122 236-371 399-526 (591)
376 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.21 4.6E-06 42.5 13.0 109 290-432 18-127 (354)
377 PF05694 SBP56: 56kDa selenium 96.2 1.1 2.4E-05 41.9 20.7 160 252-417 220-392 (461)
378 PRK13616 lipoprotein LpqB; Pro 96.1 0.74 1.6E-05 45.9 18.6 114 175-309 451-564 (591)
379 PF10647 Gmad1: Lipoprotein Lp 96.0 0.55 1.2E-05 41.4 15.5 163 235-428 25-197 (253)
380 KOG2444 WD40 repeat protein [G 95.9 0.024 5.3E-07 47.1 6.1 65 245-317 70-136 (238)
381 PF10168 Nup88: Nuclear pore c 95.8 2.6 5.5E-05 43.2 25.3 83 234-316 85-182 (717)
382 KOG2079 Vacuolar assembly/sort 95.8 0.02 4.3E-07 58.1 6.1 100 352-467 98-200 (1206)
383 PF02897 Peptidase_S9_N: Proly 95.7 2.1 4.6E-05 41.0 20.7 115 235-371 125-261 (414)
384 PF12234 Rav1p_C: RAVE protein 95.6 0.67 1.5E-05 45.9 15.7 114 238-370 34-156 (631)
385 COG3386 Gluconolactonase [Carb 95.6 1.7 3.6E-05 39.4 23.5 90 281-384 161-255 (307)
386 KOG3630 Nuclear pore complex, 95.6 0.31 6.7E-06 50.3 13.5 152 235-415 102-260 (1405)
387 PF14870 PSII_BNR: Photosynthe 95.6 1.7 3.7E-05 39.2 17.8 158 232-425 143-301 (302)
388 PF10168 Nup88: Nuclear pore c 95.4 0.46 1E-05 48.3 14.3 96 342-437 85-188 (717)
389 KOG2444 WD40 repeat protein [G 95.3 0.062 1.3E-06 44.8 6.4 105 296-430 71-179 (238)
390 KOG4499 Ca2+-binding protein R 95.3 1.6 3.4E-05 36.9 16.8 100 286-409 161-264 (310)
391 COG3204 Uncharacterized protei 95.3 1.9 4.1E-05 37.8 19.2 175 113-315 86-265 (316)
392 PF10313 DUF2415: Uncharacteri 95.1 0.1 2.2E-06 30.8 5.1 33 283-315 1-35 (43)
393 PF07995 GSDH: Glucose / Sorbo 95.0 2.9 6.3E-05 38.6 23.0 71 282-365 252-330 (331)
394 PF14870 PSII_BNR: Photosynthe 95.0 2.5 5.3E-05 38.1 16.1 117 232-367 185-301 (302)
395 TIGR02604 Piru_Ver_Nterm putat 94.8 1.5 3.3E-05 41.2 15.3 150 283-456 14-198 (367)
396 KOG2377 Uncharacterized conser 94.8 0.32 7E-06 44.9 10.1 106 342-461 67-173 (657)
397 PF10313 DUF2415: Uncharacteri 94.7 0.12 2.6E-06 30.5 4.8 31 36-66 1-34 (43)
398 PF08728 CRT10: CRT10; InterP 94.5 2.4 5.2E-05 42.7 16.1 74 234-312 164-245 (717)
399 KOG1916 Nuclear protein, conta 94.5 0.059 1.3E-06 53.8 5.0 160 203-376 151-328 (1283)
400 TIGR03606 non_repeat_PQQ dehyd 94.4 5 0.00011 38.5 18.3 59 234-293 30-89 (454)
401 PF15390 DUF4613: Domain of un 94.3 2 4.4E-05 41.5 14.3 158 234-428 20-186 (671)
402 PF08728 CRT10: CRT10; InterP 94.0 4.5 9.8E-05 40.8 16.7 166 245-427 49-245 (717)
403 KOG1897 Damage-specific DNA bi 93.9 9.1 0.0002 39.7 26.9 193 197-430 597-817 (1096)
404 PF12234 Rav1p_C: RAVE protein 93.9 2.3 4.9E-05 42.4 14.3 115 284-428 31-156 (631)
405 KOG4499 Ca2+-binding protein R 93.7 3.9 8.4E-05 34.7 17.7 98 344-453 160-265 (310)
406 TIGR02604 Piru_Ver_Nterm putat 93.7 2.8 6.1E-05 39.4 14.5 66 235-302 73-142 (367)
407 PF15390 DUF4613: Domain of un 93.4 5.9 0.00013 38.5 15.6 71 238-315 117-188 (671)
408 KOG4441 Proteins containing BT 93.2 10 0.00022 38.0 19.7 25 44-68 282-312 (571)
409 KOG3630 Nuclear pore complex, 93.2 3.9 8.5E-05 42.8 14.8 85 197-294 170-255 (1405)
410 PF05694 SBP56: 56kDa selenium 93.1 7.9 0.00017 36.4 19.8 213 197-431 89-345 (461)
411 PF02897 Peptidase_S9_N: Proly 92.9 9.2 0.0002 36.7 27.1 243 117-432 128-408 (414)
412 PF07569 Hira: TUP1-like enhan 92.8 0.87 1.9E-05 39.0 8.7 79 290-371 18-96 (219)
413 PHA02713 hypothetical protein; 92.1 8 0.00017 38.7 15.8 22 293-315 512-535 (557)
414 PF07995 GSDH: Glucose / Sorbo 92.0 2.9 6.2E-05 38.7 11.8 57 235-293 3-59 (331)
415 PF10214 Rrn6: RNA polymerase 91.9 18 0.00039 37.9 21.9 75 234-315 204-278 (765)
416 PF12657 TFIIIC_delta: Transcr 91.9 3.3 7.2E-05 34.0 10.9 33 113-145 86-122 (173)
417 PF02333 Phytase: Phytase; In 91.6 12 0.00025 35.0 19.3 115 197-315 173-292 (381)
418 KOG2280 Vacuolar assembly/sort 91.4 16 0.00036 36.7 16.2 51 401-452 219-270 (829)
419 KOG2377 Uncharacterized conser 91.4 7 0.00015 36.7 13.0 126 238-383 27-153 (657)
420 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.1 17 0.00038 36.1 30.6 25 409-433 471-495 (527)
421 PHA02713 hypothetical protein; 90.8 11 0.00024 37.8 15.3 24 409-432 512-537 (557)
422 PLN00033 photosystem II stabil 90.5 16 0.00035 34.6 18.0 155 236-425 241-396 (398)
423 KOG1898 Splicing factor 3b, su 89.6 30 0.00065 36.4 22.2 36 33-68 580-621 (1205)
424 PF13449 Phytase-like: Esteras 89.6 17 0.00037 33.5 17.9 181 234-428 20-249 (326)
425 KOG4460 Nuclear pore complex, 89.4 6.6 0.00014 37.5 11.2 87 342-432 104-202 (741)
426 PF12657 TFIIIC_delta: Transcr 89.2 4.4 9.5E-05 33.3 9.4 30 400-429 87-122 (173)
427 PF14727 PHTB1_N: PTHB1 N-term 89.2 21 0.00045 34.0 28.9 156 46-262 36-204 (418)
428 KOG4649 PQQ (pyrrolo-quinoline 89.0 14 0.00031 31.9 15.7 109 247-383 25-135 (354)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 5.6 0.00012 37.7 10.7 93 282-381 307-408 (415)
430 PF10647 Gmad1: Lipoprotein Lp 88.6 17 0.00036 32.1 20.0 160 37-258 25-192 (253)
431 PF14781 BBS2_N: Ciliary BBSom 88.4 9.8 0.00021 29.3 13.0 113 287-431 3-128 (136)
432 PF07569 Hira: TUP1-like enhan 88.3 2.8 6.2E-05 35.9 7.8 71 241-314 18-96 (219)
433 KOG2247 WD40 repeat-containing 88.0 0.069 1.5E-06 49.6 -2.1 141 282-458 34-176 (615)
434 PF05096 Glu_cyclase_2: Glutam 87.8 18 0.0004 31.7 21.2 194 36-302 45-250 (264)
435 cd00216 PQQ_DH Dehydrogenases 87.5 31 0.00067 34.0 23.5 27 127-153 62-88 (488)
436 KOG4460 Nuclear pore complex, 87.4 5 0.00011 38.3 9.1 99 35-148 103-202 (741)
437 PF05096 Glu_cyclase_2: Glutam 87.0 20 0.00044 31.4 20.3 183 233-456 44-245 (264)
438 PLN00033 photosystem II stabil 86.7 29 0.00064 32.9 16.9 113 233-367 280-396 (398)
439 TIGR02276 beta_rpt_yvtn 40-res 86.5 4.1 8.8E-05 23.7 5.8 40 408-449 1-41 (42)
440 KOG4441 Proteins containing BT 86.5 27 0.00058 35.1 14.6 27 125-151 380-411 (571)
441 COG4590 ABC-type uncharacteriz 86.0 4.1 9E-05 38.0 7.8 107 243-371 278-387 (733)
442 KOG1900 Nuclear pore complex, 85.6 16 0.00034 39.4 12.5 85 342-429 179-273 (1311)
443 PF13449 Phytase-like: Esteras 85.5 30 0.00065 31.9 16.9 168 282-455 19-228 (326)
444 TIGR02276 beta_rpt_yvtn 40-res 85.2 4.5 9.6E-05 23.5 5.5 31 351-382 1-33 (42)
445 PF02333 Phytase: Phytase; In 84.7 35 0.00076 32.0 18.2 202 197-430 70-292 (381)
446 COG5167 VID27 Protein involved 84.2 41 0.00089 32.4 18.1 98 252-370 535-632 (776)
447 TIGR03606 non_repeat_PQQ dehyd 83.7 32 0.00069 33.2 12.9 62 282-353 29-90 (454)
448 PRK13684 Ycf48-like protein; P 83.6 37 0.00081 31.4 29.6 159 233-427 172-330 (334)
449 KOG1900 Nuclear pore complex, 83.1 10 0.00022 40.7 9.9 82 233-315 178-274 (1311)
450 KOG2280 Vacuolar assembly/sort 83.0 57 0.0012 33.1 16.5 39 342-381 217-256 (829)
451 PF08801 Nucleoporin_N: Nup133 82.9 28 0.0006 33.6 12.7 30 401-430 192-221 (422)
452 PF07676 PD40: WD40-like Beta 82.8 4.5 9.7E-05 23.2 4.6 29 34-62 7-38 (39)
453 PF10214 Rrn6: RNA polymerase 82.5 69 0.0015 33.7 22.5 140 231-371 77-233 (765)
454 PF11635 Med16: Mediator compl 81.5 74 0.0016 33.4 19.4 81 342-423 260-345 (753)
455 KOG2247 WD40 repeat-containing 81.1 0.45 9.7E-06 44.5 -0.2 141 176-364 39-182 (615)
456 TIGR03118 PEPCTERM_chp_1 conse 81.0 41 0.0009 30.2 21.6 241 176-452 27-308 (336)
457 TIGR03118 PEPCTERM_chp_1 conse 81.0 42 0.0009 30.2 19.2 58 252-317 220-283 (336)
458 COG4590 ABC-type uncharacteriz 80.0 11 0.00024 35.4 8.0 165 233-432 220-390 (733)
459 PF14781 BBS2_N: Ciliary BBSom 79.7 26 0.00057 27.0 11.8 112 240-370 5-125 (136)
460 PHA03098 kelch-like protein; P 78.8 74 0.0016 31.8 16.4 24 409-432 487-515 (534)
461 PF07676 PD40: WD40-like Beta 77.9 8.7 0.00019 22.0 4.7 30 281-310 7-38 (39)
462 PF11715 Nup160: Nucleoporin N 77.8 32 0.0007 34.5 11.7 35 402-437 218-256 (547)
463 COG5167 VID27 Protein involved 77.0 32 0.00069 33.1 10.1 130 297-457 482-619 (776)
464 PF12341 DUF3639: Protein of u 74.9 8.1 0.00018 20.3 3.4 26 36-63 2-27 (27)
465 PF11715 Nup160: Nucleoporin N 74.0 20 0.00043 36.0 9.0 34 283-317 215-252 (547)
466 KOG1983 Tomosyn and related SN 73.8 47 0.001 35.9 11.9 26 407-432 243-268 (993)
467 PHA02790 Kelch-like protein; P 73.5 97 0.0021 30.5 16.7 24 409-432 446-474 (480)
468 KOG3616 Selective LIM binding 73.3 1.1E+02 0.0024 31.2 16.4 318 33-438 12-414 (1636)
469 KOG1983 Tomosyn and related SN 72.2 1.5E+02 0.0033 32.2 16.0 32 36-67 36-67 (993)
470 COG3823 Glutamine cyclotransfe 72.0 60 0.0013 27.4 11.7 31 125-155 55-87 (262)
471 COG3823 Glutamine cyclotransfe 71.3 62 0.0013 27.3 13.5 22 280-301 226-247 (262)
472 PF14761 HPS3_N: Hermansky-Pud 70.8 65 0.0014 27.3 11.7 115 246-371 30-164 (215)
473 PF14727 PHTB1_N: PTHB1 N-term 70.7 1E+02 0.0022 29.5 17.3 115 291-430 33-165 (418)
474 PF07250 Glyoxal_oxid_N: Glyox 70.4 18 0.00038 31.5 6.6 74 344-427 69-147 (243)
475 PRK10115 protease 2; Provision 69.3 1.5E+02 0.0032 30.9 21.5 112 234-370 127-255 (686)
476 PF11635 Med16: Mediator compl 68.2 68 0.0015 33.7 11.5 85 110-208 257-345 (753)
477 PHA03098 kelch-like protein; P 67.4 1.4E+02 0.003 29.9 17.6 26 125-150 342-372 (534)
478 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.2 1.4E+02 0.0031 29.8 27.3 31 352-383 471-502 (527)
479 smart00564 PQQ beta-propeller 65.9 13 0.00029 20.1 3.5 21 412-432 8-28 (33)
480 PF03022 MRJP: Major royal jel 65.4 1.1E+02 0.0023 27.7 17.1 65 284-359 187-253 (287)
481 PF07250 Glyoxal_oxid_N: Glyox 64.9 96 0.0021 27.1 11.6 124 288-432 72-201 (243)
482 PF03022 MRJP: Major royal jel 64.7 1.1E+02 0.0024 27.6 18.6 176 255-451 35-243 (287)
483 COG5290 IkappaB kinase complex 64.6 1.3E+02 0.0028 31.1 11.6 30 35-64 112-141 (1243)
484 PF03088 Str_synth: Strictosid 64.4 24 0.00051 25.1 5.2 44 300-360 32-75 (89)
485 KOG1896 mRNA cleavage and poly 64.2 2.2E+02 0.0047 31.2 13.6 142 253-428 1064-1213(1366)
486 KOG1916 Nuclear protein, conta 62.5 14 0.0003 38.1 4.9 24 43-66 243-266 (1283)
487 PRK13684 Ycf48-like protein; P 60.0 1.5E+02 0.0032 27.5 20.1 146 282-459 172-320 (334)
488 KOG3522 Predicted guanine nucl 59.5 2E+02 0.0044 29.9 12.1 141 197-371 549-698 (925)
489 PF14269 Arylsulfotran_2: Aryl 59.3 47 0.001 30.1 7.5 74 344-428 146-220 (299)
490 PF14761 HPS3_N: Hermansky-Pud 56.4 1.3E+02 0.0027 25.7 17.8 76 233-312 134-213 (215)
491 PF01731 Arylesterase: Arylest 56.3 36 0.00078 24.0 4.9 26 403-428 58-84 (86)
492 PHA02790 Kelch-like protein; P 54.5 2.2E+02 0.0049 28.0 17.6 27 125-151 318-346 (480)
493 PF11725 AvrE: Pathogenicity f 54.0 3.9E+02 0.0085 30.7 17.0 99 342-459 660-761 (1774)
494 PF01436 NHL: NHL repeat; Int 54.0 31 0.00068 18.0 4.6 25 285-310 4-28 (28)
495 PF01731 Arylesterase: Arylest 52.8 73 0.0016 22.5 6.0 29 343-371 55-85 (86)
496 KOG2727 Rab3 GTPase-activating 51.4 20 0.00044 37.0 4.1 70 345-432 325-410 (1244)
497 PF13570 PQQ_3: PQQ-like domai 50.4 29 0.00063 19.9 3.2 21 409-429 20-40 (40)
498 TIGR02608 delta_60_rpt delta-6 50.3 64 0.0014 20.5 4.9 30 37-66 2-36 (55)
499 PF08801 Nucleoporin_N: Nup133 50.0 2.4E+02 0.0053 27.1 13.2 31 283-314 190-220 (422)
500 PF05935 Arylsulfotrans: Aryls 49.9 2.7E+02 0.0057 27.5 14.6 133 288-440 153-312 (477)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-49 Score=331.83 Aligned_cols=328 Identities=16% Similarity=0.212 Sum_probs=265.8
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
.-+|.++|.|++|+|+|+.||+|+.|.++++||+.+... ..+..+|.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----------------------~~t~KgH~---------- 157 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----------------------LFTCKGHK---------- 157 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----------------------ceeecCCc----------
Confidence 457999999999999999999999999999999998763 46788999
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEE-EeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.+|+|+| ||..|++|+.||+|++||..+++... .+..+. ....+++|.|-...
T Consensus 158 --~WVlcvawsP--Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~---------------K~It~Lawep~hl~---- 214 (480)
T KOG0271|consen 158 --NWVLCVAWSP--DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK---------------KWITALAWEPLHLV---- 214 (480)
T ss_pred --cEEEEEEECC--CcchhhccccCCeEEEecCCCCCcccccccCcc---------------cceeEEeecccccC----
Confidence 8899999997 78899999999999999998876432 111111 11226666543220
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+.-.++++++.||+++||| ...+.+...+ .+|+.+|+|+.|--+| ++++| .|++|++|+... +.+.
T Consensus 215 ---p~~r~las~skDg~vrIWd-------~~~~~~~~~l-sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~ 281 (480)
T KOG0271|consen 215 ---PPCRRLASSSKDGSVRIWD-------TKLGTCVRTL-SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLC 281 (480)
T ss_pred ---CCccceecccCCCCEEEEE-------ccCceEEEEe-ccCccceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHH
Confidence 1111799999999999999 2334455554 8999999999998766 78888 899999999985 4443
Q ss_pred eeeecCCCccCCCCCceEEEEEc-----------CCC------------------------CcEEEEEeCCCeEEEEeCC
Q 011257 269 NIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------CNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~-----------p~~------------------------~~~l~~~~~dg~i~iwd~~ 313 (490)
+ .+.+|...|+.++.+ |.+ +..+++|+.|.++.+|+-.
T Consensus 282 r-------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 282 R-------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred H-------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc
Confidence 3 578999999988877 323 1359999999999999976
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (490)
..+. ++.. +.+|..-|+.+.||||++|+|+++ |..|++||.++ ++.+.++++|-..
T Consensus 355 ~~kk---pi~r------------mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk~lasfRGHv~~------- 411 (480)
T KOG0271|consen 355 KSKK---PITR------------MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GKFLASFRGHVAA------- 411 (480)
T ss_pred cccc---chhh------------hhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cchhhhhhhccce-------
Confidence 5431 1333 445668999999999999999986 69999999998 9999999999887
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCccee
Q 011257 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 466 (490)
Q Consensus 393 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~ 466 (490)
|..++|+.|.++|++|+.|.++++|++++.+. ...+.+|.+.|.++.|+|||..+..+.-++..+
T Consensus 412 --------VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 412 --------VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred --------eEEEEeccCccEEEEcCCCceEEEEEeeeeee-cccCCCCCceEEEEEecCCCceeecCCCceEEE
Confidence 45999999999999999999999999998876 688999999999999999999888777666544
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.5e-46 Score=317.19 Aligned_cols=285 Identities=20% Similarity=0.310 Sum_probs=252.5
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+++-..+|..+.||.|++.||||+.+|.+++|+..+.. .+.+|.||.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~--------- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT--------- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc---------
Confidence 456678999999999999999999999999999987654 468899999
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+.|.++.|+|..++..+++|+.||++++|++.+.....
T Consensus 218 ---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------------------------------- 255 (459)
T KOG0272|consen 218 ---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------------------------------- 255 (459)
T ss_pred ---cceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---------------------------------------
Confidence 88999999996456789999999999999998753211
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
. +.+|...|..++|+|+|++|+++ .|.+-++||+++.....
T Consensus 256 -------------------------------------~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 256 -------------------------------------D-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred -------------------------------------h-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 0 36888999999999999999999 89999999999766554
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
...+|...|.+++|+||| .++++|+.|..-+|||+++++.+ ..+.+ |..+|.+|+
T Consensus 298 --------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----m~L~g------------H~k~I~~V~ 352 (459)
T KOG0272|consen 298 --------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----MFLAG------------HIKEILSVA 352 (459)
T ss_pred --------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEE----EEecc------------cccceeeEe
Confidence 358999999999999999 99999999999999999999753 44444 558999999
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCEEEEeecCCeEEEEe
Q 011257 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~ 426 (490)
|+|+|..||+| +|++++|||++. ...+.++.+|... |..|+|+| .|.+|+|++.|++++||.
T Consensus 353 fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nl---------------VS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 353 FSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNL---------------VSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ECCCceEEeecCCCCcEEEeeecc-cccceecccccch---------------hhheEecccCCeEEEEcccCcceeeec
Confidence 99999999998 579999999997 8889999999988 45999999 788999999999999999
Q ss_pred cCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 427 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
..+..+ ++.+.+|.+.|.++..+||+.....++.++..+.+
T Consensus 417 ~~~~~~-~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 417 TRTWSP-LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred CCCccc-chhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 999988 79999999999999999999999999988877655
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-45 Score=310.18 Aligned_cols=285 Identities=18% Similarity=0.343 Sum_probs=240.2
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-.|...|.|++|+|||+.||+|+.||.|++||..+++++ ...+.+|.
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----------------------g~~l~gH~----------- 200 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----------------------GRALRGHK----------- 200 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----------------------cccccCcc-----------
Confidence 469999999999999999999999999999999988864 56789999
Q ss_pred ccceeEEEEee---cCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 112 EEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 112 ~~~V~~v~~~p---~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..|++++|-| .++..+|++++.||.|+|||+..+.+......+... + .++.|--+
T Consensus 201 -K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--------V-------TCvrwGG~------ 258 (480)
T KOG0271|consen 201 -KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--------V-------TCVRWGGE------ 258 (480)
T ss_pred -cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--------e-------EEEEEcCC------
Confidence 8899999988 345678999999999999999998877766555321 1 13334333
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEec-----------CCC------------
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-----------SDG------------ 245 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-----------~~~------------ 245 (490)
+++++++.|++|++|+ ...+.+.+.+ .+|...|+.++.+ |.+
T Consensus 259 -------gliySgS~DrtIkvw~-------a~dG~~~r~l-kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 259 -------GLIYSGSQDRTIKVWR-------ALDGKLCREL-KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred -------ceEEecCCCceEEEEE-------ccchhHHHhh-cccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 3899999999999999 2224444554 8999999998876 223
Q ss_pred -------------CEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 246 -------------ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 246 -------------~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
+.|++| +|.++.+|+.....+.+. .+.+|...|..+.|+||+ +++|+++.|..|++||
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~-------rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT-------RMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCceEEEecccccccchh-------hhhchhhheeeEEECCCc-cEEEEeecccceeeee
Confidence 359999 899999999886665554 678999999999999999 9999999999999999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
.++|+. +.+|.+| ..+|..++|+.|.++|++|+ |.++++||+++ .+....+.+|.+.
T Consensus 396 g~tGk~----lasfRGH------------v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DE----- 453 (480)
T KOG0271|consen 396 GRTGKF----LASFRGH------------VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT-KKLKQDLPGHADE----- 453 (480)
T ss_pred CCCcch----hhhhhhc------------cceeEEEEeccCccEEEEcCCCceEEEEEeee-eeecccCCCCCce-----
Confidence 999975 3555554 48999999999999999986 69999999998 8888999999887
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
|+++.|+|||..+++|+.|..+++|.
T Consensus 454 ----------Vf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 454 ----------VFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ----------EEEEEecCCCceeecCCCceEEEeec
Confidence 56999999999999999999999995
No 4
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-44 Score=300.91 Aligned_cols=367 Identities=69% Similarity=1.091 Sum_probs=317.4
Q ss_pred cccccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcc
Q 011257 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (490)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (490)
+...+.|+|+|+|+.. +...+-|+++.|..+|.+||||..+|.|.++....... .+|
T Consensus 6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~ey 62 (433)
T KOG1354|consen 6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GEY 62 (433)
T ss_pred cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cce
Confidence 3457889999998844 56678899999999999999999999999999765432 267
Q ss_pred ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccc
Q 011257 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (490)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
++...++.|++||+|+++++++.+|+.++|.+..+...|+..+.|.+|++|.+.....+. ........
T Consensus 63 ~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~----------- 130 (433)
T KOG1354|consen 63 NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE----------- 130 (433)
T ss_pred eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc-----------
Confidence 788999999999999999999999999999998888899999999999999998754333 11110000
Q ss_pred ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 171 ~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
+ ..+.-..+++.- +...+......|++.+..+|+..|.+++++.|.+.+++
T Consensus 131 ------------~----------------~~~~~~~lr~p~-~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 131 ------------G----------------PPGTITSLRLPV-EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred ------------C----------------CCCccceeecee-eccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 0 111122333333 44455556667888888999999999999999999999
Q ss_pred ecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 251 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
++|-.|.+|+++...+.+.++++||..+.....-|++..|+|...++|+..+..|+|++-|++...+|+.+.+.|+...+
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
+..+.++.+....|..+.|+++|+|+++-+.-+|++||+.+..+++.+++.|......+|++|+.+++++-+.++|+.++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCC
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 441 (490)
.+++||+..+.++++++..|.....++....
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr 372 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASR 372 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccc
Confidence 9999999999999999888766555555443
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-40 Score=283.78 Aligned_cols=259 Identities=19% Similarity=0.282 Sum_probs=226.6
Q ss_pred ccccccccccccccccccccccccccccEEEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecC
Q 011257 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH 87 (490)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~d--g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 87 (490)
++.....|+..++ .......+|.+.|.++.|+|. +..||||+.||++++|++++..
T Consensus 195 wsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~------------------- 252 (459)
T KOG0272|consen 195 WSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET------------------- 252 (459)
T ss_pred cCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-------------------
Confidence 4667788999986 233346789999999999996 6689999999999999998765
Q ss_pred CccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCc
Q 011257 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 88 p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (490)
.+..+.+|. ..|..++|+| +|.+|++++.|.+-++||+.++....
T Consensus 253 ----~l~~l~gH~------------~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL----------------- 297 (459)
T KOG0272|consen 253 ----PLQDLEGHL------------ARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELL----------------- 297 (459)
T ss_pred ----chhhhhcch------------hhheeeeecC--CCceeeecccccchhhcccccchhhH-----------------
Confidence 367899999 8899999997 67799999999999999999875211
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
+..||...|.+++|++||.+
T Consensus 298 ------------------------------------------------------------~QEGHs~~v~~iaf~~DGSL 317 (459)
T KOG0272|consen 298 ------------------------------------------------------------LQEGHSKGVFSIAFQPDGSL 317 (459)
T ss_pred ------------------------------------------------------------hhcccccccceeEecCCCce
Confidence 03799999999999999999
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
+++| -|..-++||++++.... .+.+|..+|.+|+|+|+| ..+|||+.|++++|||++.... ++++.
T Consensus 318 ~~tGGlD~~~RvWDlRtgr~im--------~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~----ly~ip 384 (459)
T KOG0272|consen 318 AATGGLDSLGRVWDLRTGRCIM--------FLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE----LYTIP 384 (459)
T ss_pred eeccCccchhheeecccCcEEE--------EecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc----ceecc
Confidence 9999 89999999999665543 368899999999999999 9999999999999999998654 56766
Q ss_pred cccCCCccccccccccceEEEEECC-CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeE
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
.|. +-|+.|+|+| .|.+|++++ |++++||...+ ..+++.+.+|.+. |.++
T Consensus 385 AH~------------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-~~~~ksLaGHe~k---------------V~s~ 436 (459)
T KOG0272|consen 385 AHS------------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-WSPLKSLAGHEGK---------------VISL 436 (459)
T ss_pred ccc------------chhhheEecccCCeEEEEcccCcceeeecCCC-cccchhhcCCccc---------------eEEE
Confidence 665 7899999999 788999976 69999999997 9999999999987 5799
Q ss_pred EEcCCCCEEEEeecCCeEEEEe
Q 011257 405 CLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 405 ~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
.+++|+.++++++.|+++++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 9999999999999999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6e-38 Score=255.16 Aligned_cols=298 Identities=14% Similarity=0.238 Sum_probs=236.9
Q ss_pred ccccccccEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
....|++.|+.++..+. .+.+++++.|..+.+|++...... -+.....+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------------~G~~~r~~~GHs-------- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------------YGVPVRRLTGHS-------- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------------cCceeeeeeccc--------
Confidence 34579999999999996 568899999999999999765421 223456688888
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..|+.+..++ +|+++++++.|+++++||+.+++..+.+..+.. ...+++|++|.+
T Consensus 64 ----H~v~dv~~s~--dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~---------------dVlsva~s~dn~---- 118 (315)
T KOG0279|consen 64 ----HFVSDVVLSS--DGNFALSASWDGTLRLWDLATGESTRRFVGHTK---------------DVLSVAFSTDNR---- 118 (315)
T ss_pred ----eEecceEEcc--CCceEEeccccceEEEEEecCCcEEEEEEecCC---------------ceEEEEecCCCc----
Confidence 7799999986 778999999999999999999877776665542 123789999999
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeec-cccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSD--GETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~ 264 (490)
.+++|+.|.++++|+++. .|..+.. .++...|.++.|+|. ..+++++ .|+++++||+++-
T Consensus 119 --------qivSGSrDkTiklwnt~g--------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 119 --------QIVSGSRDKTIKLWNTLG--------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred --------eeecCCCcceeeeeeecc--------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 799999999999999322 2222222 334788999999998 6788888 8999999999843
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+ ... .+.+|.+.++.++++||| .+.++|+.||.+.+||++.++. ++.+... ..|
T Consensus 183 ~-l~~-------~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~a~-------------~~v 236 (315)
T KOG0279|consen 183 Q-LRT-------TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLEAF-------------DIV 236 (315)
T ss_pred c-hhh-------ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEeccCC-------------CeE
Confidence 3 322 568999999999999999 9999999999999999999874 3555443 689
Q ss_pred EEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccc-ccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
.+++|+|+.-+|+.+.+..|+|||+.+ +..+..++...... ... .... ..+++|++||..|+.|-.|+.|+
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s~~~------~~~~-clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGPSSKA------GDPI-CLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccc-hhhhhhcccccccccccc------CCcE-EEEEEEcCCCcEEEeeecCCcEE
Confidence 999999998888888887899999997 77777765433211 000 0011 35899999999999999999999
Q ss_pred EEecC
Q 011257 424 VFGCS 428 (490)
Q Consensus 424 vw~~~ 428 (490)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.4e-38 Score=256.22 Aligned_cols=286 Identities=20% Similarity=0.347 Sum_probs=230.3
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|.+.|.++.|++|.+++++++.||.+.|||..+..+. ..+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s---------- 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS---------- 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc----------
Confidence 4579999999999999999999999999999998765532 1111112
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe----EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..|...+|+| .|++++.|+.|+...||++.+.+ ......+..+ .+.+. +..|.+|+
T Consensus 98 --~WVMtCA~sP--Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH------tgylS-------cC~f~dD~--- 157 (343)
T KOG0286|consen 98 --SWVMTCAYSP--SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH------TGYLS-------CCRFLDDN--- 157 (343)
T ss_pred --eeEEEEEECC--CCCeEEecCcCceeEEEecccccccccceeeeeecCc------cceeE-------EEEEcCCC---
Confidence 6699999998 45699999999999999998542 1111122221 11221 45555554
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
.|++++.|.+..+||+. .++....+ .+|.+.|.+++++| +++.+++| -|+..++||++..
T Consensus 158 ----------~ilT~SGD~TCalWDie-------~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 158 ----------HILTGSGDMTCALWDIE-------TGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ----------ceEecCCCceEEEEEcc-------cceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 58999999999999932 23334444 89999999999999 89999999 8999999999944
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
.+.+ .+.+|...|+++.|.|+| .-|++|+.|++.|+||++..+.+ ..|.... ...+|
T Consensus 220 -~c~q-------tF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~~~----------~~~gi 276 (343)
T KOG0286|consen 220 -QCVQ-------TFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSHDS----------IICGI 276 (343)
T ss_pred -ceeE-------eecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeeccCc----------ccCCc
Confidence 5655 579999999999999999 99999999999999999987643 4444322 12689
Q ss_pred EEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 345 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
++++||..|++|++| .|.++.+||.-+ ++.+..+.+|... |.++..+|||.-|++|++|..+|
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNR---------------vScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENR---------------VSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCe---------------eEEEEECCCCcEEEecchhHhee
Confidence 999999999999998 679999999987 8999999999987 55999999999999999999999
Q ss_pred EEe
Q 011257 424 VFG 426 (490)
Q Consensus 424 vw~ 426 (490)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=255.18 Aligned_cols=288 Identities=16% Similarity=0.248 Sum_probs=236.7
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
..+++||. .+|.++.|++ +.+++++++.||.+.|||.-+..-.....++. .++
T Consensus 48 rr~LkGH~------------~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s--------~WV----- 100 (343)
T KOG0286|consen 48 RRTLKGHL------------NKIYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS--------SWV----- 100 (343)
T ss_pred EEEecccc------------cceeeeEecC--CcCeEEeeccCCeEEEEEcccccceeEEecCc--------eeE-----
Confidence 46689999 8999999996 66799999999999999998765455444432 122
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (490)
...+|+|.|. +++.|+-|+...||+ +...+........+. +.+|+..+.++.|-+|+ .|+++
T Consensus 101 --MtCA~sPSg~------------~VAcGGLdN~Csiy~-ls~~d~~g~~~v~r~-l~gHtgylScC~f~dD~-~ilT~S 163 (343)
T KOG0286|consen 101 --MTCAYSPSGN------------FVACGGLDNKCSIYP-LSTRDAEGNVRVSRE-LAGHTGYLSCCRFLDDN-HILTGS 163 (343)
T ss_pred --EEEEECCCCC------------eEEecCcCceeEEEe-cccccccccceeeee-ecCccceeEEEEEcCCC-ceEecC
Confidence 2678999999 899999999999999 333322222222333 48999999999998866 45566
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.|.+..+||++++.+. . .+.+|.+.|.++.++| ++ +.|++|+-|+..++||++.+.. ..+|.+|+
T Consensus 164 GD~TCalWDie~g~~~-~-------~f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c----~qtF~ghe- 229 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQT-Q-------VFHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQC----VQTFEGHE- 229 (343)
T ss_pred CCceEEEEEcccceEE-E-------EecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCcce----eEeecccc-
Confidence 8999999999955544 3 4689999999999999 66 9999999999999999999854 46777765
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
..|++|+|.|+|.-+++|+| ++.++||++. .+.+..+.... .+.+|++++||..
T Consensus 230 -----------sDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~-------------~~~gitSv~FS~S 284 (343)
T KOG0286|consen 230 -----------SDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHDS-------------IICGITSVAFSKS 284 (343)
T ss_pred -----------cccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccCc-------------ccCCceeEEEccc
Confidence 78999999999999999976 9999999997 77777776332 2345789999999
Q ss_pred CCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
|++|++|..|..+.|||.-.++. ...|.+|...|.++..+|||..+..++.+..
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred ccEEEeeecCCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 99999999999999999998887 6899999999999999999999888876644
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-37 Score=268.68 Aligned_cols=379 Identities=16% Similarity=0.235 Sum_probs=274.2
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCC-CCCcccccccccceeecCCcccccc--------------
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD-NGGQRRDLEMMDYSMSRHPEFRYKT-------------- 94 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~-------------- 94 (490)
..-+|..+++-..|||.|.|+|+|...|+|+|||....+. +....+.+...+..++|.++.+.+.
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 3457999999999999999999999999999999876432 2222333455666667766542111
Q ss_pred --------ccccCC------------------------------cccceeeee-eeccceeEEEEeecCCCcEEEEEeCc
Q 011257 95 --------EFQSHE------------------------------PEFDYLKSL-EIEEKINKIRWCQSANSALYLLSTND 135 (490)
Q Consensus 95 --------~~~~h~------------------------------~~~~~~~~~-~~~~~V~~v~~~p~~~~~~l~~~~~d 135 (490)
++.||. |+|..-.+. +|..-|++++|+| ||++|++++.|
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsD 211 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSD 211 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCC
Confidence 122222 233333333 4667899999997 68899999999
Q ss_pred CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecc
Q 011257 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS 215 (490)
Q Consensus 136 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~ 215 (490)
|.|.+||=.+++....+.- ...+.|.++ +++|+||++ .+++.+.|.++++||+..+
T Consensus 212 gki~iyDGktge~vg~l~~-----~~aHkGsIf-------alsWsPDs~------------~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELED-----SDAHKGSIF-------ALSWSPDST------------QFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred ccEEEEcCCCccEEEEecC-----CCCccccEE-------EEEECCCCc------------eEEEecCCceEEEEEeecc
Confidence 9999999999887665553 233567777 999999999 8999999999999996332
Q ss_pred ccccc-------------------------------------ccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEE
Q 011257 216 QETNL-------------------------------------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (490)
Q Consensus 216 ~~~~~-------------------------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~ 257 (490)
. ... .....+. ..+|...|+++..+|++++|++| .||.|.
T Consensus 268 s-lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 268 S-LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred c-eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe-ecccccceeEEEEcCCCCEEEeeccCceEE
Confidence 1 100 0001122 37899999999999999999999 899999
Q ss_pred EEEcCCCCce------------------------------eeeeec---------------CCCc---------------
Q 011257 258 LWNLEISNQS------------------------------FNIVDV---------------KPAN--------------- 277 (490)
Q Consensus 258 ~wd~~~~~~~------------------------------~~~~~~---------------~~~~--------------- 277 (490)
-|+...+... ++.+++ +|..
T Consensus 346 ~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 346 SWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred EEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 9998753211 000000 0000
Q ss_pred -----cCC--------CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 278 -----MED--------LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 278 -----~~~--------~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+.. -.-...+++++|++ ..++.|+.|+.|++|.+.....+.+ .. ...|.++|
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee--~~------------~~~h~a~i 490 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEE--AK------------LLEHRAAI 490 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcccce--ee------------eecccCCc
Confidence 000 11234678999999 9999999999999999988654321 12 23355899
Q ss_pred EEEEECCCCCEEEEEcC-CeEEEEeccCCCCc-eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
+++++|||+.|||+++- +.+.+||+.+ .+. ...+.-|... |.+++|+|+..++|+|+-|-.|
T Consensus 491 T~vaySpd~~yla~~Da~rkvv~yd~~s-~~~~~~~w~FHtak---------------I~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRKVVLYDVAS-REVKTNRWAFHTAK---------------INCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred eEEEECCCCcEEEEeccCCcEEEEEccc-Cceecceeeeeeee---------------EEEEEeCCCceEEEeccccceE
Confidence 99999999999999975 9999999986 333 2334445544 5699999999999999999999
Q ss_pred EEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
.||+++.....+....+|...|+.++|--+...+..+.......|
T Consensus 555 iiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W 599 (603)
T KOG0318|consen 555 IIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVW 599 (603)
T ss_pred EEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEe
Confidence 999999877656777899999999999887766655544433333
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4e-37 Score=246.24 Aligned_cols=297 Identities=14% Similarity=0.218 Sum_probs=232.3
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCc
Q 011257 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (490)
Q Consensus 48 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~ 127 (490)
-+||+++.|.+|++|...++.+. .+++-.+ ..|+.+...| ++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~-----------------------rTiqh~d------------sqVNrLeiTp--dk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICS-----------------------RTIQHPD------------SQVNRLEITP--DKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEE-----------------------EEEecCc------------cceeeEEEcC--Ccc
Confidence 48999999999999999998853 4444333 6799999986 445
Q ss_pred EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcE
Q 011257 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (490)
Q Consensus 128 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v 207 (490)
.|++++ ...||+||+.++....+..+..+. ..+ .++.|..+|+ .+++|++||++
T Consensus 54 ~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~------kNV-------taVgF~~dgr------------WMyTgseDgt~ 107 (311)
T KOG0315|consen 54 DLAAAG-NQHVRLYDLNSNNPNPVATFEGHT------KNV-------TAVGFQCDGR------------WMYTGSEDGTV 107 (311)
T ss_pred hhhhcc-CCeeEEEEccCCCCCceeEEeccC------Cce-------EEEEEeecCe------------EEEecCCCceE
Confidence 666665 568999999988654544444321 122 2788999999 89999999999
Q ss_pred EEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceE
Q 011257 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (490)
Q Consensus 208 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (490)
+||| ++. ..+.+. ..|..+|+++..+|+..-|++| .+|.|++||+... .+... -++.....|.
T Consensus 108 kIWd-lR~------~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~~------liPe~~~~i~ 171 (311)
T KOG0315|consen 108 KIWD-LRS------LSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTHE------LIPEDDTSIQ 171 (311)
T ss_pred EEEe-ccC------cccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC-ccccc------cCCCCCccee
Confidence 9999 332 223333 3667999999999999999999 8999999999844 33221 1344567899
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEE
Q 011257 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLK 365 (490)
Q Consensus 287 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~ 365 (490)
++...|+| .+++.+...|..++|++-..... ..+. +...++.|.+.+..+.+|||++|||++ +|.+++
T Consensus 172 sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s~l~------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 172 SLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----SELE------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred eEEEcCCC-cEEEEecCCccEEEEEccCCCcc----ccce------EhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 99999999 99999999999999999875422 1111 112256677899999999999999997 679999
Q ss_pred EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceE
Q 011257 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (490)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 445 (490)
||+.+..-+....+++|..+ |++++||.||+||++|+.|+.+++|++..++. +....+|-.+..
T Consensus 241 iwn~~~~~kle~~l~gh~rW---------------vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh~K~~v 304 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRW---------------VWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGHHKAAV 304 (311)
T ss_pred EEecCCceeeEEEeecCCce---------------EEeeeeccCccEEEecCCCCceeecccccCce-eeecCCcccccE
Confidence 99998633566678888777 68999999999999999999999999999988 588888888887
Q ss_pred EEEEc
Q 011257 446 RQVQT 450 (490)
Q Consensus 446 ~~~~s 450 (490)
+++..
T Consensus 305 c~~ln 309 (311)
T KOG0315|consen 305 CVALN 309 (311)
T ss_pred EEEee
Confidence 77653
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-37 Score=265.73 Aligned_cols=283 Identities=19% Similarity=0.352 Sum_probs=236.2
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...-...|++++|+.+|..||+|+.||.++||+..... ..++..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC----------
Confidence 34445789999999999999999999999999986544 56788888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
++|.++.|+ ..|.+|++++.|+++.+||..++..++.+.++..+ ...+.|-.+.
T Consensus 277 --gPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~---------------~lDVdW~~~~------- 330 (524)
T KOG0273|consen 277 --GPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP---------------ALDVDWQSND------- 330 (524)
T ss_pred --CceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCC---------------ccceEEecCc-------
Confidence 999999998 47889999999999999999999998888777432 1234555444
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
-+++.+.|+.|+++.+- ..++..++ .+|.+.|.++.|+|.+.+|+++ +|+++++|+..... ...
T Consensus 331 ------~F~ts~td~~i~V~kv~-------~~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~ 395 (524)
T KOG0273|consen 331 ------EFATSSTDGCIHVCKVG-------EDRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVH 395 (524)
T ss_pred ------eEeecCCCceEEEEEec-------CCCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-chh
Confidence 47899999999998721 12234444 6799999999999999999999 99999999987444 332
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCC--------cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
.+..|...|..+.|+|+|+ ..+++++.|++|++||+..+.. +..|..| .
T Consensus 396 -------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~----i~~f~kH------------~ 452 (524)
T KOG0273|consen 396 -------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP----IHTLMKH------------Q 452 (524)
T ss_pred -------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----eEeeccC------------C
Confidence 5788999999999999763 5799999999999999998864 3555444 4
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
.+|.+++|+|+|+|+|+|+ ||.|.+|+.++ ++.++.+.+... |+.++|+.+|.+|..+-.||
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~----------------Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG----------------IFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe----------------EEEEEEcCCCCEEEEEecCC
Confidence 8999999999999999996 69999999998 888888877654 45999999999999999999
Q ss_pred eEEEEecC
Q 011257 421 LFRVFGCS 428 (490)
Q Consensus 421 ~i~vw~~~ 428 (490)
.+.+-|++
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99998875
No 12
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-39 Score=265.75 Aligned_cols=363 Identities=56% Similarity=0.853 Sum_probs=302.5
Q ss_pred cccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccc
Q 011257 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (490)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 94 (490)
-.|+|.|+||.+.....+...+.|+++.|...|.|||+|...|.|.+|..+.... =+|++++
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~------------------ceykf~t 67 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG------------------CEYKFFT 67 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccc------------------cchhhhh
Confidence 4699999999999999999999999999999999999999999999999875542 1678899
Q ss_pred ccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccccc
Q 011257 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (490)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (490)
+|++|++||+|+++++++.+|+.|.|.....-..|+..+.|++|++|.+....++.+......... .
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~-------~------ 134 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF-------H------ 134 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccccc-------c------
Confidence 999999999999999999999999999766667899999999999999988766555443322110 0
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCC
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~ 254 (490)
+|-+.. +. .-..+++-. +...+......+.+.+...|...+.+++|+.|.+.+++++|-
T Consensus 135 -----~~~~g~------------~~---s~~~l~lpr-ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdL 193 (460)
T COG5170 135 -----SPMGGP------------LT---STKELLLPR-LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDL 193 (460)
T ss_pred -----cccCCC------------cC---CHHHhhccc-ccccceEEEeccceeccccceeEeeeeeecCchheeeeccce
Confidence 111110 00 000111111 111111111223344457899999999999999999999999
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
.|.+|+++.....+.+++++|..+......|++..|+|.....|...+..|.|++-|++...+|..+.+.+....++...
T Consensus 194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~ 273 (460)
T COG5170 194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV 273 (460)
T ss_pred eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence 99999999999999999999999988899999999999987899999999999999999998888888888887777788
Q ss_pred ccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 011257 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 414 (490)
.++.+....|..+.|+++|+|+++.+.-+++|||.++...++.++..|......+++.|+.+++++-+.+.||.|.+.+.
T Consensus 274 ~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~ 353 (460)
T COG5170 274 DFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL 353 (460)
T ss_pred hhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccc
Confidence 88999999999999999999999999899999999998999999999999999999999999999999999999999999
Q ss_pred EeecCCeEEEEecCC
Q 011257 415 TGSYSNLFRVFGCSE 429 (490)
Q Consensus 415 s~~~dg~i~vw~~~~ 429 (490)
+|+..+..-+|-..+
T Consensus 354 sgsy~NNfgiyp~~s 368 (460)
T COG5170 354 SGSYSNNFGIYPTDS 368 (460)
T ss_pred ccccccceeeecccc
Confidence 999999888887543
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-36 Score=273.26 Aligned_cols=387 Identities=16% Similarity=0.221 Sum_probs=258.2
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccc-------
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD------- 104 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~------- 104 (490)
..|+.||.-++|+|.|.+||+|+.|+.|+|||+..+.+. .....+...++.+.|+|+.....-..+-....-
T Consensus 102 a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t-h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 102 AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT-HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE-EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 459999999999999999999999999999999988776 334456778899999997644111111110000
Q ss_pred ---eeeee-eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCC-------cCCCCCCccccccc
Q 011257 105 ---YLKSL-EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE-------KAAGNGPIFGSHVS 173 (490)
Q Consensus 105 ---~~~~~-~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 173 (490)
.+..+ .|...|+++.|.+ ++..++++++|..+.+||+.+.+...........+ .....+..+.....
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred CchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence 01111 2448899999996 56789999999999999996544333222111100 00000111100000
Q ss_pred cCce-EEe------------ccCCccccccccC-------------------------------------------CCCc
Q 011257 174 AIPK-SYM------------ANGGCGERNFGCA-------------------------------------------SNDS 197 (490)
Q Consensus 174 ~~~~-~~s------------~~g~~~~~~~~~~-------------------------------------------~~~~ 197 (490)
...+ .|. |++..+....... +.++
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence 0000 111 1111111000111 2234
Q ss_pred cccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC-----------
Q 011257 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN----------- 265 (490)
Q Consensus 198 l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~----------- 265 (490)
++.++..+.+++|+ ... ..|. +..+|+..|.+++...+|-+|++| .|.++++|.++...
T Consensus 339 laVATNs~~lr~y~-~~~------~~c~--ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 339 LAVATNSPELRLYT-LPT------SYCQ--IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred EEEEeCCCceEEEe-cCC------CceE--EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 55555555555554 111 1121 347899999998866777888888 79999999774221
Q ss_pred ------------------------ceeeeeecCC-------C------ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 266 ------------------------QSFNIVDVKP-------A------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 266 ------------------------~~~~~~~~~~-------~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
..++++++.. . ....|...|++++.+|+. .++|||+.|.+.+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaK 488 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAK 488 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEeccccccee
Confidence 1111111110 0 123466777777777777 7777777777777
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccc
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRP 387 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (490)
||++...+. +.+ +.+|...|.++.|+|..+.++++ +|++|+||.+.+ ..+++++.+|...
T Consensus 489 iW~le~~~l----~~v------------LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~a-- 549 (775)
T KOG0319|consen 489 IWDLEQLRL----LGV------------LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSA-- 549 (775)
T ss_pred eecccCceE----EEE------------eeCCccceEEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccce--
Confidence 777775432 244 44555899999999999999997 579999999997 9999999999976
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
|..+.|-.+|+.|++++.||.|++|+++++++ +.++.+|.+.|++++-+|...+...++.+..
T Consensus 550 -------------Vlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 550 -------------VLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred -------------eEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhhhccceeEEEeecCccceeEecCCCeE
Confidence 67999999999999999999999999999999 6999999999999999999997766655444
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=243.85 Aligned_cols=285 Identities=19% Similarity=0.302 Sum_probs=231.3
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
.+|++.|+.+.|+|+|.+||+|+.|..|.+|++...... ...+.+|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----------------------~~~lkgHs----------- 90 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----------------------FWVLKGHS----------- 90 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc----------------------eeeecccc-----------
Confidence 479999999999999999999999999999998655432 45678999
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
++|..+.|.+ +++.+++++.|.+|+.||+++++....
T Consensus 91 -gAVM~l~~~~--d~s~i~S~gtDk~v~~wD~~tG~~~rk---------------------------------------- 127 (338)
T KOG0265|consen 91 -GAVMELHGMR--DGSHILSCGTDKTVRGWDAETGKRIRK---------------------------------------- 127 (338)
T ss_pred -ceeEeeeecc--CCCEEEEecCCceEEEEecccceeeeh----------------------------------------
Confidence 9999999985 777999999999999999999875442
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE-e-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~~wd~~~~~~~~~ 269 (490)
..+|..-|+++.-..-|..|+. + +|+++++||++... ..+
T Consensus 128 -------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~ 169 (338)
T KOG0265|consen 128 -------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIK 169 (338)
T ss_pred -------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhh
Confidence 2456667777775555666655 5 79999999999443 332
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.....-.++++.|..++ ..+.+|+-|+.|++||++.+.. ++++.+|. .+|+.+..
T Consensus 170 --------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~~lsGh~------------DtIt~lsl 224 (338)
T KOG0265|consen 170 --------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LYTLSGHA------------DTITGLSL 224 (338)
T ss_pred --------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eEEeeccc------------CceeeEEe
Confidence 22346678999999998 8999999999999999998764 46666665 78999999
Q ss_pred CCCCCEEEEE-cCCeEEEEeccC---CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 350 ARNGRHILSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 350 sp~g~~l~sg-~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
+|+|.++.+- -|.++++||++. ..+++..+.+|..... +. ...++|+|++.++..|+.|..+++|
T Consensus 225 s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe--------kn---lL~cswsp~~~~i~ags~dr~vyvw 293 (338)
T KOG0265|consen 225 SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE--------KN---LLKCSWSPNGTKITAGSADRFVYVW 293 (338)
T ss_pred ccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh--------hh---cceeeccCCCCccccccccceEEEe
Confidence 9999999995 579999999984 1334677777654311 11 2479999999999999999999999
Q ss_pred ecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
|..+... +..+.+|.+.|.++.|+|..+.....+.++....
T Consensus 294 d~~~r~~-lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 294 DTTSRRI-LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ecccccE-EEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9987666 6899999999999999999999888877765443
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-35 Score=258.44 Aligned_cols=322 Identities=16% Similarity=0.255 Sum_probs=244.4
Q ss_pred cccccEEEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~-~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
.|+.+|.+.+|+|-.. .||+|+.|-..++|++........... ..+......++. .+-
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~-------------~lrh~~~~~~~s--------~~~ 234 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL-------------VLRHCIREGGKS--------VPS 234 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh-------------hhhhhhhhhccc--------CCc
Confidence 4899999999999655 999999999999999874211100000 000011111111 111
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
...|++++|+ .+|..|++|+.||.+++|+..+......-.+ .++++ ++.|+..|.
T Consensus 235 nkdVT~L~Wn--~~G~~LatG~~~G~~riw~~~G~l~~tl~~H---------kgPI~-------slKWnk~G~------- 289 (524)
T KOG0273|consen 235 NKDVTSLDWN--NDGTLLATGSEDGEARIWNKDGNLISTLGQH---------KGPIF-------SLKWNKKGT------- 289 (524)
T ss_pred cCCcceEEec--CCCCeEEEeecCcEEEEEecCchhhhhhhcc---------CCceE-------EEEEcCCCC-------
Confidence 2669999998 5788999999999999999887654332222 33444 889999998
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
||++++.|+++.+||+ ..+.+.+.+ .-|..+-..+.|-.+.. |+++ .|+.|+++.+....+..
T Consensus 290 -----yilS~~vD~ttilwd~-------~~g~~~q~f-~~~s~~~lDVdW~~~~~-F~ts~td~~i~V~kv~~~~P~~-- 353 (524)
T KOG0273|consen 290 -----YILSGGVDGTTILWDA-------HTGTVKQQF-EFHSAPALDVDWQSNDE-FATSSTDGCIHVCKVGEDRPVK-- 353 (524)
T ss_pred -----EEEeccCCccEEEEec-------cCceEEEee-eeccCCccceEEecCce-EeecCCCceEEEEEecCCCcce--
Confidence 9999999999999993 223333333 55666656788876654 5555 89999999998554443
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
++.+|.+.|.++.|+|.+ .+|++++.|++++||.+..... ...+ ..|...|..+.|+
T Consensus 354 ------t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~----~~~l------------~~Hskei~t~~ws 410 (524)
T KOG0273|consen 354 ------TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNS----VHDL------------QAHSKEIYTIKWS 410 (524)
T ss_pred ------eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcc----hhhh------------hhhccceeeEeec
Confidence 467899999999999999 9999999999999999876543 2344 4455889999999
Q ss_pred CCC---------CEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 351 RNG---------RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 351 p~g---------~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
|+| ..++++ .|++|++||+.. +.++.++..|... |.+++|+|+|++||+|+.||
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~~f~kH~~p---------------VysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIHTLMKHQEP---------------VYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeEeeccCCCc---------------eEEEEecCCCcEEEecCCCC
Confidence 964 356664 689999999997 9999999888876 56999999999999999999
Q ss_pred eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
.|.+|+.++++. .+.+.+ .+.|..++|+.+|....
T Consensus 475 ~V~iws~~~~~l-~~s~~~-~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 475 CVHIWSTKTGKL-VKSYQG-TGGIFELCWNAAGDKLG 509 (524)
T ss_pred eeEeccccchhe-eEeecC-CCeEEEEEEcCCCCEEE
Confidence 999999999987 566665 45699999999997544
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-36 Score=251.54 Aligned_cols=285 Identities=16% Similarity=0.284 Sum_probs=239.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|..+|+.+-|+|+-..+++++.|++|++||..+++ +...++||+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----------------------~e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----------------------LERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----------------------hhhhhhccc----------
Confidence 45699999999999999999999999999999999887 467899999
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+.|..|+|. ..|.++++++.|=.+++||.++. ++......+. ....++.|.|.|.
T Consensus 151 --~sv~di~~~--a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~---------------h~vS~V~f~P~gd----- 206 (406)
T KOG0295|consen 151 --DSVFDISFD--ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE---------------HGVSSVFFLPLGD----- 206 (406)
T ss_pred --cceeEEEEe--cCccEEEecCCccchhheeHHHHHHHHHHhcCcc---------------cceeeEEEEecCC-----
Confidence 889999998 46789999999999999999863 1111111111 1112677888876
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
++++++.|.+|+.|+ ...+.|.+++ .+|...|..++.+.||.+++++ .|.++++|-+.+. ++.
T Consensus 207 -------~ilS~srD~tik~We-------~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~k 270 (406)
T KOG0295|consen 207 -------HILSCSRDNTIKAWE-------CDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QCK 270 (406)
T ss_pred -------eeeecccccceeEEe-------cccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc-hhh
Confidence 999999999999999 3345677776 8999999999999999999999 8999999999844 332
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCC--------------CcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTH--------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~--------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
. .+..|..+|-+++|.|.. ..++.+++.|++|++||+.++.. +.++.+|.
T Consensus 271 ~-------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c----L~tL~ghd----- 334 (406)
T KOG0295|consen 271 A-------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC----LFTLVGHD----- 334 (406)
T ss_pred h-------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE----EEEEeccc-----
Confidence 2 467899999999998732 25899999999999999999864 46666655
Q ss_pred ccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 011257 335 SFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 413 (490)
+.|..++|+|.|+||+++ +|+++++||+++ .+++.++..|... |+++.|+.+..++
T Consensus 335 -------nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~-~~cmk~~~ah~hf---------------vt~lDfh~~~p~V 391 (406)
T KOG0295|consen 335 -------NWVRGVAFSPGGKYILSCADDKTLRVWDLKN-LQCMKTLEAHEHF---------------VTSLDFHKTAPYV 391 (406)
T ss_pred -------ceeeeeEEcCCCeEEEEEecCCcEEEEEecc-ceeeeccCCCcce---------------eEEEecCCCCceE
Confidence 899999999999999997 569999999997 9999999999987 5699999999999
Q ss_pred EEeecCCeEEEEec
Q 011257 414 ATGSYSNLFRVFGC 427 (490)
Q Consensus 414 ~s~~~dg~i~vw~~ 427 (490)
++|+-|..+++|..
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999975
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.7e-36 Score=275.32 Aligned_cols=264 Identities=19% Similarity=0.315 Sum_probs=211.8
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccc--cccc-----cce-eecCC-ccccccccccCCcccce
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD--LEMM-----DYS-MSRHP-EFRYKTEFQSHEPEFDY 105 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~--~~~~-----~~~-~~~~p-~~~~~~~~~~h~~~~~~ 105 (490)
...|+|..|++|+++||.|-.|..|++|.+...+.. .++.. +... +.. --..+ ......++.||.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~----- 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS----- 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccchhhhccccccccchhhhhccccCCceeEEeecCC-----
Confidence 357899999999999999999999999999853211 11111 0000 000 00000 011223366777
Q ss_pred eeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 106 ~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
++|....|+| +.++|++++.|+++|+|.+.+......
T Consensus 452 -------GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~---------------------------------- 488 (707)
T KOG0263|consen 452 -------GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVI---------------------------------- 488 (707)
T ss_pred -------Cceeeeeecc--cccceeeccCCcceeeeecccceeEEE----------------------------------
Confidence 9999999998 556999999999999999988653221
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
..+|..+|+.+.|+|-|-+||++ .|++.++|....
T Consensus 489 -------------------------------------------y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~- 524 (707)
T KOG0263|consen 489 -------------------------------------------YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH- 524 (707)
T ss_pred -------------------------------------------ecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-
Confidence 15888999999999999999999 899999999884
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
....+ .+.+|.+.|.|+.|+|+. .++++|+.|.++|+||+.+|.. ++.|.+|. ++|
T Consensus 525 ~~PlR-------ifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~------------~~V 580 (707)
T KOG0263|consen 525 NKPLR-------IFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----VRIFTGHK------------GPV 580 (707)
T ss_pred CCchh-------hhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----EEEecCCC------------Cce
Confidence 33333 368999999999999999 9999999999999999999875 46776665 899
Q ss_pred EEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
.+++|||+|++|++|+ |+.|.+||+.+ +.++..+.+|.+. |.++.||.||..||+|+.|++|+
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEE
Confidence 9999999999999985 59999999997 8999999999766 56999999999999999999999
Q ss_pred EEecCCCc
Q 011257 424 VFGCSEGS 431 (490)
Q Consensus 424 vw~~~~~~ 431 (490)
+||+..-.
T Consensus 645 lWD~~~~~ 652 (707)
T KOG0263|consen 645 LWDLTKVI 652 (707)
T ss_pred EEEchhhc
Confidence 99997543
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=243.86 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=252.6
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+..|+++|.+++.+|+.+++|||+.|....||+..++. +...+.+|.
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------------------~~~eltgHK--------- 106 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------------------FAGELTGHK--------- 106 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------ceeEecCCC---------
Confidence 356799999999999999999999999999999999887 357789999
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+.|+++.|+ .+|.+|++|..+|.|+||+..++.....+..... -...+.|+|.+.
T Consensus 107 ---DSVt~~~Fs--hdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~---------------dieWl~WHp~a~----- 161 (399)
T KOG0296|consen 107 ---DSVTCCSFS--HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE---------------DIEWLKWHPRAH----- 161 (399)
T ss_pred ---CceEEEEEc--cCceEEEecCCCccEEEEEcccCceEEEeecccC---------------ceEEEEeccccc-----
Confidence 899999998 5888999999999999999999876665532211 011678899888
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
.|++|+.||.+-+|.+... ...+. +.+|+.++++-.|.|+|+.++++ .||+|++|+..+..+..
T Consensus 162 -------illAG~~DGsvWmw~ip~~-------~~~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 162 -------ILLAGSTDGSVWMWQIPSQ-------ALCKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred -------EEEeecCCCcEEEEECCCc-------ceeeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 8999999999999982211 22233 38999999999999999999999 89999999999776554
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE-
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI- 347 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l- 347 (490)
.+- -. ......++.++..+ ..++.|+.++.+++-+..+++++ ....+ ..+ .....+...+.++
T Consensus 227 ~~~------~~-e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv----~~~n~-~~~---~l~~~~e~~~esve 290 (399)
T KOG0296|consen 227 KIT------QA-EGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVV----NCNNG-TVP---ELKPSQEELDESVE 290 (399)
T ss_pred Eec------cc-ccCcCCcccccccc-ceeEeccCCccEEEEccccceEE----EecCC-CCc---cccccchhhhhhhh
Confidence 431 11 13456788888888 89999999999999998888754 12211 000 0111222344444
Q ss_pred --EECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 348 --KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 348 --~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
.|+..-.+.|+|+ ||+|.|||+.. ..+.+.+ .|... |+.+.|-+ ..+|++++.+|.|+.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~---------------V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDG---------------VTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred hcccccccchhhcccccceEEEEeccc-chhheec-cCCCc---------------eEEEEEcC-cchheeeccCceEEe
Confidence 4454556667775 79999999985 4433333 34433 56999998 789999999999999
Q ss_pred EecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
||.++|++ ..++.+|...|.+++.+|+.+.+..++.+
T Consensus 353 wDaRtG~l-~~~y~GH~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 353 WDARTGQL-KFTYTGHQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred eeccccce-EEEEecCchheeEEEEcCCCcEEEEecCC
Confidence 99999988 68999999999999999999887766654
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=259.59 Aligned_cols=350 Identities=17% Similarity=0.249 Sum_probs=255.3
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|-+.|+++.|+.|.++|++|+.|-.++||.++..+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------- 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------- 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC----------
Confidence 4578999999999999999999999999999999876632 245688998
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEE------------------------------EEeeeccCCCc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK------------------------------KVFDWNVHPEK 160 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~------------------------------~~~~~~~~~~~ 160 (490)
+.|.+.-|.. +...+++.+.||.+.+|........ ....+-.....
T Consensus 190 --d~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 190 --DYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred --cceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 8898888874 5567999999999999987621000 00000000000
Q ss_pred CCCCCCccccccccCceEE---------eccCCc----------cccccccCCCCccccCCC-CCcEEEeeeeccccccc
Q 011257 161 AAGNGPIFGSHVSAIPKSY---------MANGGC----------GERNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNL 220 (490)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~---------s~~g~~----------~~~~~~~~~~~~l~~~~~-~g~v~iw~~~~~~~~~~ 220 (490)
.......+.+........| .|+-.. +........+|.|+.|+. -|.+-+|+ +..+...
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe--WqsEsYV 343 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE--WQSESYV 343 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE--eecccee
Confidence 0000000000000000011 111110 000111123567776654 48899998 4444322
Q ss_pred ccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE
Q 011257 221 VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (490)
Q Consensus 221 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 299 (490)
.. ..+|...+.+++++|||+++|+| +||.|++||.. .+-++. ++..|+..|+.+.|+..+ +.++
T Consensus 344 lK------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-SgfC~v-------TFteHts~Vt~v~f~~~g-~~ll 408 (893)
T KOG0291|consen 344 LK------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-SGFCFV-------TFTEHTSGVTAVQFTARG-NVLL 408 (893)
T ss_pred ee------ccccccceeeEEECCCCcEEEeccCCCcEEEEecc-CceEEE-------EeccCCCceEEEEEEecC-CEEE
Confidence 22 27899999999999999999999 99999999998 454554 578999999999999999 9999
Q ss_pred EEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C-CeEEEEeccCCCCcee
Q 011257 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA 377 (490)
Q Consensus 300 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d-~~i~iwd~~~~~~~~~ 377 (490)
+.+-||+||.||+...+. .++|..+.. ....+++..|.|..+.+|+ | -.|.+|++++ ++.+.
T Consensus 409 ssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~QfscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllD 472 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLD 472 (893)
T ss_pred EeecCCeEEeeeecccce----eeeecCCCc-----------eeeeEEEEcCCCCEEEeeccceEEEEEEEeec-Ceeee
Confidence 999999999999987653 466665532 4578899999999999985 5 8899999998 99999
Q ss_pred eeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
.+.+|.++ |.+++|+|++..|+++++|.+||+||+-+......++. +...+..++|+|||...+
T Consensus 473 iLsGHEgP---------------Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 473 ILSGHEGP---------------VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred hhcCCCCc---------------ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 99999988 45899999999999999999999999986644344554 456799999999999998
Q ss_pred CCccCcc
Q 011257 458 LGSLSGV 464 (490)
Q Consensus 458 ~~~~~~~ 464 (490)
.+..++.
T Consensus 537 VaTldgq 543 (893)
T KOG0291|consen 537 VATLDGQ 543 (893)
T ss_pred EEEecce
Confidence 8877643
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9e-34 Score=227.07 Aligned_cols=268 Identities=15% Similarity=0.212 Sum_probs=213.2
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCc
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~ 206 (490)
-+|++++.|.+||+|...+|.+.....++.. ..+.+...|+++ +|+ +.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~ds---------------qVNrLeiTpdk~------------~LA-aa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDS---------------QVNRLEITPDKK------------DLA-AAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCcc---------------ceeeEEEcCCcc------------hhh-hccCCe
Confidence 4789999999999999999998887766542 223788889988 444 455678
Q ss_pred EEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCce
Q 011257 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (490)
Q Consensus 207 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (490)
|++||+...... +..++ .+|...|.++.|..+|+++++| +||++++||++.. .+. ....|..+|
T Consensus 63 vRlyD~~S~np~-----Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-~~q--------R~~~~~spV 127 (311)
T KOG0315|consen 63 VRLYDLNSNNPN-----PVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-SCQ--------RNYQHNSPV 127 (311)
T ss_pred eEEEEccCCCCC-----ceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-ccc--------hhccCCCCc
Confidence 999994333222 34444 8999999999999999999999 9999999999953 222 345578999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeE
Q 011257 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL 364 (490)
Q Consensus 286 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i 364 (490)
+++..+|+. ..|++|..+|.|++||+...... ..+-... ..+|.++...|||.+|+++.+ |..
T Consensus 128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~----~~liPe~-----------~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCT----HELIPED-----------DTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ceEEecCCc-ceEEeecCCCcEEEEEccCCccc----cccCCCC-----------CcceeeEEEcCCCcEEEEecCCccE
Confidence 999999998 89999999999999999986421 1111111 157999999999999999976 999
Q ss_pred EEEeccC-----CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc
Q 011257 365 KLWDINM-----DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 365 ~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
++|++-. .-+++..++.|... ++.+.+|||+++||+++.|.+++||+.++--.....+++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999864 23455667777765 468999999999999999999999999987333578999
Q ss_pred CCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 440 SKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 440 ~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
|+..+...+||.||.....++.+...+.+
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceeec
Confidence 99999999999999999888877554433
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=253.19 Aligned_cols=279 Identities=18% Similarity=0.304 Sum_probs=236.2
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
+.+|..+.|.|+|+.|++|+..|.+.+|+..+- .+...++.|. .+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------------nFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------------NFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------------eHHHHhhhhc------------cc
Confidence 558999999999999999999999999997532 2456688998 89
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
|.++.|++ ++.++++|+.+|.|++|+..-...+.
T Consensus 141 Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnnVk~-------------------------------------------- 174 (464)
T KOG0284|consen 141 VRTMKWSH--NGTWMISGDKGGMIKYWQPNMNNVKI-------------------------------------------- 174 (464)
T ss_pred ceeEEEcc--CCCEEEEcCCCceEEecccchhhhHH--------------------------------------------
Confidence 99999995 67799999999999999865432111
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
+...|...|++++|+|....|+++ +||+|++||.....+..
T Consensus 175 ---------------------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~----- 216 (464)
T KOG0284|consen 175 ---------------------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER----- 216 (464)
T ss_pred ---------------------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-----
Confidence 013445889999999999999999 99999999998655443
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.+.+|.-.|.+++|+|.. .++++|+.|..|++||.+++.. +.++..|+ ..|..+.|+|++
T Consensus 217 ---vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~c----l~tlh~HK------------ntVl~~~f~~n~ 276 (464)
T KOG0284|consen 217 ---VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSC----LATLHGHK------------NTVLAVKFNPNG 276 (464)
T ss_pred ---eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcch----hhhhhhcc------------ceEEEEEEcCCC
Confidence 368999999999999998 8999999999999999999874 35555554 889999999999
Q ss_pred CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCEEEEeecCCeEEEEecCCCc
Q 011257 354 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 354 ~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
.+|++++ |..++++|+++ .+.++++++|... |+++.|+| ...+|++|+.||.|..|.+...+
T Consensus 277 N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred CeeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEeccccc
Confidence 9999985 69999999996 8889999999877 46999999 56688999999999999999666
Q ss_pred eeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 432 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
.....-.+|...|.+++|+|-|-....++.++..+.+
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 5455567899999999999999999999888865443
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-34 Score=246.22 Aligned_cols=291 Identities=15% Similarity=0.211 Sum_probs=231.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|++.|.-+.||++|+|||+++.|.+..||++.... ..++..++.+|.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~---------- 269 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS---------- 269 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc----------
Confidence 34699999999999999999999999999999987544 234567788998
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
.+|..+.|+| |++++++++.|..+++||+.++.......... ..+..+.+|.|||.
T Consensus 270 --~~V~yi~wSP--DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~--------------~~S~~sc~W~pDg~------ 325 (519)
T KOG0293|consen 270 --QPVSYIMWSP--DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL--------------GFSVSSCAWCPDGF------ 325 (519)
T ss_pred --CceEEEEECC--CCCeEEecCchHheeeccCCcchhhhhcccCc--------------CCCcceeEEccCCc------
Confidence 8899999997 66799999999999999999997655433221 12334889999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.+++|+.|+.+..|| ..+... ...+ .-....|.+++..+||+++++. .|..|++++.++.... .
T Consensus 326 ------~~V~Gs~dr~i~~wd-lDgn~~-~~W~------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-~ 390 (519)
T KOG0293|consen 326 ------RFVTGSPDRTIIMWD-LDGNIL-GNWE------GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-G 390 (519)
T ss_pred ------eeEecCCCCcEEEec-CCcchh-hccc------ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-c
Confidence 799999999999999 332221 1111 1122568999999999999997 8999999999844322 1
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+.....+|+++..+.++ +++++.-.+..+++||+..... ++.+.+|... ..+..-||
T Consensus 391 --------lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~l----v~kY~Ghkq~----------~fiIrSCF 447 (519)
T KOG0293|consen 391 --------LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKL----VRKYFGHKQG----------HFIIRSCF 447 (519)
T ss_pred --------cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhH----HHHhhccccc----------ceEEEecc
Confidence 23346789999999999 9999999999999999997654 4666666532 34555667
Q ss_pred CC-CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC-CCEEEEeecCCeEEEEe
Q 011257 350 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFG 426 (490)
Q Consensus 350 sp-~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~ 426 (490)
-- +..++++|+ |+.|+||+..+ ++++..+.+|... |.+++|+|. ..++|+|++||+||||.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~---------------vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKT---------------VNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccC-CceeEeecCCcce---------------eeEEecCCCCHHHhhccCCCCeEEEec
Confidence 65 558899986 59999999998 9999999999977 459999995 55799999999999998
Q ss_pred cCC
Q 011257 427 CSE 429 (490)
Q Consensus 427 ~~~ 429 (490)
...
T Consensus 512 ~~~ 514 (519)
T KOG0293|consen 512 PSD 514 (519)
T ss_pred CCc
Confidence 774
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-33 Score=228.15 Aligned_cols=279 Identities=15% Similarity=0.245 Sum_probs=213.4
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-----EEEEeeeccCCCcCCCCCC
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-----VKKVFDWNVHPEKAAGNGP 166 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~ 166 (490)
+..++.+|+ +.|+.++..+. +.+.++++++|.++.+|++.... ....+..+.+ .
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--------~ 65 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--------F 65 (315)
T ss_pred eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccce--------E
Confidence 345688999 88999999885 45689999999999999987542 2232222211 1
Q ss_pred ccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC
Q 011257 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (490)
Q Consensus 167 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (490)
+ ..++.++||. +.++++.|+++++||+. .++..+.+ .+|...|.+++|++|..
T Consensus 66 v-------~dv~~s~dg~------------~alS~swD~~lrlWDl~-------~g~~t~~f-~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 66 V-------SDVVLSSDGN------------FALSASWDGTLRLWDLA-------TGESTRRF-VGHTKDVLSVAFSTDNR 118 (315)
T ss_pred e-------cceEEccCCc------------eEEeccccceEEEEEec-------CCcEEEEE-EecCCceEEEEecCCCc
Confidence 1 2677888888 89999999999999922 22334444 89999999999999999
Q ss_pred EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccccccce
Q 011257 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (490)
Q Consensus 247 ~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (490)
.+++| .|.+|++|+.. +...+.+ .-..+.+.|.|+.|+|+. ..+|++++.|+++++||+++-+.. ..
T Consensus 119 qivSGSrDkTiklwnt~-g~ck~t~------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~ 187 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTL-GVCKYTI------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TT 187 (315)
T ss_pred eeecCCCcceeeeeeec-ccEEEEE------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hc
Confidence 99999 89999999998 4444443 123348899999999983 279999999999999999986542 34
Q ss_pred eccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceee
Q 011257 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
+. +|++.++.+.+||||...++|. ||.+.+||++. ++.+..+.+... |.+
T Consensus 188 ~~------------gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~-~k~lysl~a~~~----------------v~s 238 (315)
T KOG0279|consen 188 FI------------GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE-GKNLYSLEAFDI----------------VNS 238 (315)
T ss_pred cc------------cccccEEEEEECCCCCEEecCCCCceEEEEEccC-CceeEeccCCCe----------------Eee
Confidence 44 4558999999999999999975 69999999996 787777765443 459
Q ss_pred EEEcCCCCEEEEeecCCeEEEEecCCCceeeeEec----c-----CCCceEEEEEccCCCCCCCCc
Q 011257 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----A-----SKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~----~-----~~~~v~~~~~sp~~~~~~~~~ 460 (490)
++|+|+.-+|+.+.. ..|+|||+.++.+ +..++ + ..-...+++||+||.....+-
T Consensus 239 l~fspnrywL~~at~-~sIkIwdl~~~~~-v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATA-TSIKIWDLESKAV-VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred EEecCCceeEeeccC-CceEEEeccchhh-hhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 999999887776654 4599999998875 23332 1 123456789999998776553
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.5e-35 Score=254.44 Aligned_cols=290 Identities=20% Similarity=0.299 Sum_probs=235.0
Q ss_pred cccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..+|+..|+++.|.| .+.+|++|+.|+.|+||++.... +++.++.+|.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------------~~lrtf~gH~--------- 258 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------------RCLRTFKGHR--------- 258 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------------ceehhhhcch---------
Confidence 457999999999999 89999999999999999998633 3578999999
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
.+|.+++|++ +|..|++++.|+.|++||+++|++...+... ..+.++.|.|++..
T Consensus 259 ---k~Vrd~~~s~--~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~----------------~~~~cvkf~pd~~n---- 313 (503)
T KOG0282|consen 259 ---KPVRDASFNN--CGTSFLSASFDRFLKLWDTETGQVLSRFHLD----------------KVPTCVKFHPDNQN---- 313 (503)
T ss_pred ---hhhhhhhccc--cCCeeeeeecceeeeeeccccceEEEEEecC----------------CCceeeecCCCCCc----
Confidence 8899999985 7889999999999999999999988766654 33448899999853
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
.+++|+.|+.|+.|| .+..+ ..+.+ ..|-+.|..+.|-++|+.+++. +|+.+++|+.+..-...
T Consensus 314 -------~fl~G~sd~ki~~wD-iRs~k------vvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 314 -------IFLVGGSDKKIRQWD-IRSGK------VVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred -------EEEEecCCCcEEEEe-ccchH------HHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 789999999999999 33222 33333 6777999999999999999999 99999999998554332
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
.+ ...+.....++..+|++ .++++-+.|..|.++.+...-. ...-+.|++|... +.-..+.
T Consensus 379 ~i-------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~va----------Gys~~v~ 439 (503)
T KOG0282|consen 379 NI-------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSVA----------GYSCQVD 439 (503)
T ss_pred hh-------cchhhccCcceecCCCC-CeehhhccCceEEEEecccccc-cCHhhhhcceecc----------CceeeEE
Confidence 22 12223344589999999 9999999999999998664321 1223456666532 4567799
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC-CCEEEEeecCCeEEEEe
Q 011257 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFG 426 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~ 426 (490)
|||||++|++| ++|.+.+||.++ .+.+..++.|... +..+.|+|. ...+|+++.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~---------------ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQP---------------CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcc---------------eEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999 469999999998 8999999999766 458999995 45799999999999996
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-33 Score=255.13 Aligned_cols=304 Identities=17% Similarity=0.297 Sum_probs=236.4
Q ss_pred ccEEEEEECCCCCEEEEecCC-CcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 36 DIISAIEFDKSGDHLATGDRG-GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
.+|..++|+..|.+||.|+.. |.+.||+++... ++...++|. ..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----------------------YVlKQQgH~------------~~ 352 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----------------------YVLKQQGHS------------DR 352 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----------------------eeeeccccc------------cc
Confidence 578899999999999999854 899999998765 556778998 88
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
+++++++| ||+++++|+.||.|++||...+-+...+..+.. .+ ..+.|+..|+
T Consensus 353 i~~l~YSp--Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--------~V-------t~v~f~~~g~---------- 405 (893)
T KOG0291|consen 353 ITSLAYSP--DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--------GV-------TAVQFTARGN---------- 405 (893)
T ss_pred eeeEEECC--CCcEEEeccCCCcEEEEeccCceEEEEeccCCC--------ce-------EEEEEEecCC----------
Confidence 99999997 788999999999999999999877766655532 12 2788999999
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeee
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.+++.+-||+|+.|| + ...++.+++.........+++..|.|.++.+| +.-.|++|+++ .++.+.
T Consensus 406 --~llssSLDGtVRAwD-l------kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q-TGqllD--- 472 (893)
T KOG0291|consen 406 --VLLSSSLDGTVRAWD-L------KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ-TGQLLD--- 472 (893)
T ss_pred --EEEEeecCCeEEeee-e------cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee-cCeeee---
Confidence 899999999999999 2 33445556544445567799999999999998 45679999999 455554
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
.+.+|.++|.++.|+|.+ ..|++++.|.+||+||+-..... ..+++.. ..+..++|+||
T Consensus 473 ----iLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---vEtl~i~-------------sdvl~vsfrPd 531 (893)
T KOG0291|consen 473 ----ILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---VETLEIR-------------SDVLAVSFRPD 531 (893)
T ss_pred ----hhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCce---eeeEeec-------------cceeEEEEcCC
Confidence 468999999999999999 89999999999999998765322 2344333 56899999999
Q ss_pred CCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccc--cccc-cC--CCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKL--CDLY-EN--DSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 353 g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~-~~--~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
|+.|+++ -||.|.+||... +..+.++.+........ .+.. .. ..-...+.+++|+||.+|++|+..+.|.+|+
T Consensus 532 G~elaVaTldgqItf~d~~~-~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKE-AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhh-ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999997 579999999986 66665555544322111 0000 00 0001246999999999999999999999999
Q ss_pred cCCCceeeeEe
Q 011257 427 CSEGSAESTTL 437 (490)
Q Consensus 427 ~~~~~~~~~~~ 437 (490)
+.++-. ++.+
T Consensus 611 v~~~vl-lkkf 620 (893)
T KOG0291|consen 611 VPEGVL-LKKF 620 (893)
T ss_pred Cchhhe-eeeE
Confidence 998754 3444
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.4e-33 Score=264.35 Aligned_cols=282 Identities=23% Similarity=0.440 Sum_probs=233.6
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|...|+|+.|+++|++|++++.|+.+++|+...... .....+.+|.
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------ 203 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------ 203 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------
Confidence 3478999999999999999999999999999965441 1345567888
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|++++|+| ++.++++++.|++|++||+... ....
T Consensus 204 ~~v~~~~fs~--d~~~l~s~s~D~tiriwd~~~~~~~~~----------------------------------------- 240 (456)
T KOG0266|consen 204 RGVSDVAFSP--DGSYLLSGSDDKTLRIWDLKDDGRNLK----------------------------------------- 240 (456)
T ss_pred cceeeeEECC--CCcEEEEecCCceEEEeeccCCCeEEE-----------------------------------------
Confidence 8899999997 6669999999999999999332 3222
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
+ +.+|...|.+++|+|+++.+++| .|++|++||+++ ..+..
T Consensus 241 -----------------------------------~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~- 282 (456)
T KOG0266|consen 241 -----------------------------------T-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVR- 282 (456)
T ss_pred -----------------------------------E-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEE-
Confidence 1 26899999999999999999999 899999999995 44444
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.+.+|...|++++|++++ ++|++++.|+.|++||+.++... .+..+..+.. . .++++++|+
T Consensus 283 ------~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~---------~-~~~~~~~fs 343 (456)
T KOG0266|consen 283 ------KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAEN---------S-APVTSVQFS 343 (456)
T ss_pred ------eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCC---------C-CceeEEEEC
Confidence 468899999999999999 99999999999999999998631 1234444331 1 158999999
Q ss_pred CCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 351 p~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|++++++++. |+.+++||+.. +..+..+.+|..... + +.+...++.++++++|+.|+.|++|++.+
T Consensus 344 p~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 344 PNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLVR---------C---IFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcce---------e---EecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 9999999985 58999999997 888888888876411 1 23666788999999999999999999999
Q ss_pred CceeeeEeccC-CCceEEEEEccCCCCCCCCcc
Q 011257 430 GSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 430 ~~~~~~~~~~~-~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+.. ++.+.+| ...+..+.++|..+.....+.
T Consensus 411 ~~~-~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 411 GGI-LQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred cch-hhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 876 6899999 899999999999998887764
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-33 Score=222.21 Aligned_cols=280 Identities=16% Similarity=0.287 Sum_probs=232.8
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-.|+++|..+.|+-||+|.++++.|.+|++|+...+. ++.++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 3578999999999999999999999999999987766 467888888
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|..++.+ .++..|++++.|+.+.+||+.+++....
T Consensus 60 -~EVlD~~~s--~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------- 96 (307)
T KOG0316|consen 60 -HEVLDAALS--SDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------- 96 (307)
T ss_pred -ceeeecccc--ccccccccCCCCceEEEEEcccCeeeee----------------------------------------
Confidence 558888887 4667999999999999999999985442
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc-eee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~-~~~ 269 (490)
+.+|...|+.++|+.+...+++| -|..+++||-+.... .++
T Consensus 97 -------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 97 -------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred -------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 36888999999999999999999 799999999985432 222
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+......|.++.... ..+++|+.||++|.||++.|++. ..+-+ .+|++++|
T Consensus 140 -------ildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~----sDy~g--------------~pit~vs~ 191 (307)
T KOG0316|consen 140 -------ILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLS----SDYFG--------------HPITSVSF 191 (307)
T ss_pred -------hhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceee----hhhcC--------------CcceeEEe
Confidence 3455678899998875 57999999999999999998753 22222 57999999
Q ss_pred CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
++|++..++++ |+++++.|-.+ ++.++.+++|..... -.++++......+++|++||.|++||+.
T Consensus 192 s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~ey-------------kldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEY-------------KLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred cCCCCEEEEeeccceeeecccch-hHHHHHhccccccee-------------eeeeeecccceeEEeccCCceEEEEEec
Confidence 99999988875 69999999998 999999999987543 2378898888999999999999999999
Q ss_pred CCceeeeEeccCCCc-eEEEEEccCCCCCCCCccCcceecC
Q 011257 429 EGSAESTTLEASKNP-MRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~-v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
.+.. +..+..+... +.++.++|.......+...+...|.
T Consensus 258 d~~~-~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 258 DETQ-ISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ccee-eeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 8877 6778888877 8999999988877666555444443
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=221.69 Aligned_cols=290 Identities=14% Similarity=0.223 Sum_probs=224.3
Q ss_pred ccccccEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-ccCCcccceeeee
Q 011257 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (490)
Q Consensus 32 ~~h~~~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~ 109 (490)
-.|++.|..++|+|- |..||+++.|..|+||+...+. .+.....+ .+|+
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk--------- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK--------- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch---------
Confidence 468999999999997 8899999999999999987533 12223333 4677
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.+++|+| .|++|++|+.|.++.||.-..++...+..+.++.. .+- +++|+++|.
T Consensus 62 ---rsVRsvAwsp--~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn------EVK-------~Vaws~sG~----- 118 (312)
T KOG0645|consen 62 ---RSVRSVAWSP--HGRYLASASFDATVVIWKKEDGEFECVATLEGHEN------EVK-------CVAWSASGN----- 118 (312)
T ss_pred ---heeeeeeecC--CCcEEEEeeccceEEEeecCCCceeEEeeeecccc------cee-------EEEEcCCCC-----
Confidence 8899999997 56799999999999999988887777666665432 222 899999999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+|++++.|..|-+|.+. ......|...+ ..|+..|..+.|+|...+|+++ .|++|++|.-...+ -.
T Consensus 119 -------~LATCSRDKSVWiWe~d----eddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-dW 185 (312)
T KOG0645|consen 119 -------YLATCSRDKSVWIWEID----EDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-DW 185 (312)
T ss_pred -------EEEEeeCCCeEEEEEec----CCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC-Ce
Confidence 99999999999999933 22334555555 8999999999999999999999 89999999877322 12
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
... .++.+|...|.+++|+|.| ..|++++.|++++||...+. +. ..|..++..+.
T Consensus 186 ~c~----~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~---------~~-----------~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 186 ECV----QTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD---------LS-----------GMHSRALYDVP 240 (312)
T ss_pred eEE----EEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC---------cc-----------hhcccceEeee
Confidence 111 2578999999999999999 99999999999999986642 11 11336789999
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccC-CCCceeee-----eeeccccccccccccCCCccceeeEEEcCC-CCEEEEeecCC
Q 011257 349 FARNGRHILSR-DYMTLKLWDINM-DSGPVATF-----QVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSN 420 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg 420 (490)
|. + ..|+++ .|+.|++|.-.. +..+...+ ..|.. +|.+++|.|. .+.|++|++||
T Consensus 241 W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~---------------dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 241 WD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV---------------DVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc---------------ccceEEEcCCCCCceeecCCCc
Confidence 98 4 467774 789999997653 11122111 22222 2569999994 78899999999
Q ss_pred eEEEEecC
Q 011257 421 LFRVFGCS 428 (490)
Q Consensus 421 ~i~vw~~~ 428 (490)
.|++|.+.
T Consensus 304 ~v~~W~l~ 311 (312)
T KOG0645|consen 304 IVNFWELE 311 (312)
T ss_pred eEEEEEec
Confidence 99999875
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-33 Score=238.79 Aligned_cols=274 Identities=17% Similarity=0.226 Sum_probs=230.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+|+.+-|+|.. ...++++.|++|++||..++++....+.+.. .+ ..++|+..|+
T Consensus 109 ~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~--------sv-------~di~~~a~Gk-------- 163 (406)
T KOG0295|consen 109 SSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTD--------SV-------FDISFDASGK-------- 163 (406)
T ss_pred cceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhcccc--------ce-------eEEEEecCcc--------
Confidence 889999999843 4778889999999999999988554444432 12 2788999998
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++++.|-.+++|| .+. ..+|++.. .+|...|.+++|-|.|.+++++ .|.+|+.|++.++ .+..
T Consensus 164 ----~l~tcSsDl~~~LWd----~~~--~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~-- 229 (406)
T KOG0295|consen 164 ----YLATCSSDLSAKLWD----FDT--FFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVK-- 229 (406)
T ss_pred ----EEEecCCccchhhee----HHH--HHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEE--
Confidence 899999999999999 221 14455554 7999999999999999999999 8999999999954 4443
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
++.+|...|..++.+.|| .++++++.|.++++|-+.+++. ...+..| ..+|.+++|.|
T Consensus 230 -----t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~----k~~lR~h------------Eh~vEci~wap 287 (406)
T KOG0295|consen 230 -----TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQC----KAELREH------------EHPVECIAWAP 287 (406)
T ss_pred -----eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchh----hhhhhcc------------ccceEEEEecc
Confidence 578999999999999999 9999999999999999988742 1344444 47788888866
Q ss_pred C---------------CCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 011257 352 N---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (490)
Q Consensus 352 ~---------------g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 415 (490)
. ++++++++ |++|++||+.+ +.++.++.+|... |..++|+|.|+||++
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnw---------------Vr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNW---------------VRGVAFSPGGKYILS 351 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccce---------------eeeeEEcCCCeEEEE
Confidence 3 35888886 69999999998 9999999999998 459999999999999
Q ss_pred eecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 416 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
+.+|+++++||++++++ ..++.+|..-++++.|+.+.+++..|+.+..
T Consensus 352 caDDktlrvwdl~~~~c-mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt 399 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQC-MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT 399 (406)
T ss_pred EecCCcEEEEEecccee-eeccCCCcceeEEEecCCCCceEEeccccce
Confidence 99999999999999999 6899999999999999999998887776543
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=234.73 Aligned_cols=291 Identities=16% Similarity=0.290 Sum_probs=228.4
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|.+.|.|+++.|...+|++|+.|++++|||+.+++ +..++.||.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi----------- 193 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI----------- 193 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh-----------
Confidence 4799999999999999999999999999999999887 457789998
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|..+++++-.. |+++++.|+.|+.||++..+.++..-.+.. .++ +++..|.-.
T Consensus 194 -~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------~V~-------~L~lhPTld------- 248 (460)
T KOG0285|consen 194 -ETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------GVY-------CLDLHPTLD------- 248 (460)
T ss_pred -heeeeeeecccCc--eEEEecCCCeeEEEechhhhhHHHhccccc--------eeE-------EEeccccce-------
Confidence 8899999997444 999999999999999999876554333321 222 555566555
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
.|++++.|.++++||+.... .... +.+|...|.++.+.|-...+++| .|++|++||++.++...
T Consensus 249 -----vl~t~grDst~RvWDiRtr~-------~V~~-l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~-- 313 (460)
T KOG0285|consen 249 -----VLVTGGRDSTIRVWDIRTRA-------SVHV-LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI-- 313 (460)
T ss_pred -----eEEecCCcceEEEeeecccc-------eEEE-ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE--
Confidence 89999999999999932222 2223 38999999999999988889999 89999999999555443
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
++..|...|.+++.+|.. ..||+++.| .|+-|++..+..+ ..+.+| ..-|.+++..
T Consensus 314 ------tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~f~----~nlsgh------------~~iintl~~n 369 (460)
T KOG0285|consen 314 ------TLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGEFL----QNLSGH------------NAIINTLSVN 369 (460)
T ss_pred ------eeecccceeeEEecCCch-hhhhccCCc-cceeccCCccchh----hccccc------------cceeeeeeec
Confidence 457899999999999998 899999888 4899999988754 344444 4789999998
Q ss_pred CCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 351 p~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
.|| ++++|+| |.+.+||.++ +...+....-.... ++ +.-.+|++.+|...|..|++|..|.+|++|.-+.
T Consensus 370 sD~-v~~~G~dng~~~fwdwks-g~nyQ~~~t~vqpG----Sl---~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKS-GHNYQRGQTIVQPG----SL---ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCc-CcccccccccccCC----cc---ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 877 5666655 9999999997 65555442221110 00 1112366999999999999999999999998663
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.5e-34 Score=262.85 Aligned_cols=265 Identities=17% Similarity=0.260 Sum_probs=212.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..++|..|++ ++.++|.|..|..|++|.+...++++......-.
T Consensus 379 ~~v~ca~fSd--dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~---------------------------------- 422 (707)
T KOG0263|consen 379 QGVTCAEFSD--DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLS---------------------------------- 422 (707)
T ss_pred CcceeEeecC--CcchhhccccccEEEEEecchhhhccccchhhhc----------------------------------
Confidence 6689999985 5668999999999999999876655433222100
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
.+=+.+.|-.+.+.| ... ....++ +.+|.++|....|+|+.++|+++ +|+++++|.+.+.....
T Consensus 423 ----~~d~~sad~~~~~~D------~~~-~~~~~~-L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--- 487 (707)
T KOG0263|consen 423 ----NIDTESADVDVDMLD------DDS-SGTSRT-LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--- 487 (707)
T ss_pred ----cccccccchhhhhcc------ccC-CceeEE-eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---
Confidence 011112222222222 111 111222 37999999999999999999999 89999999999554333
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+.+|..+|+.+.|+|.| .+||+++.|++-++|...... +++.|.+|- +.|.|+.|+|
T Consensus 488 -----~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~----PlRifaghl------------sDV~cv~FHP 545 (707)
T KOG0263|consen 488 -----IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK----PLRIFAGHL------------SDVDCVSFHP 545 (707)
T ss_pred -----EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC----chhhhcccc------------cccceEEECC
Confidence 357999999999999999 999999999999999988743 356666654 8899999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+..|+++|+ |.++++||+.+ +..++.+.+|... |.+++|||+|++|++|+.||.|.+||+.+|
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999985 69999999998 9999999999877 569999999999999999999999999999
Q ss_pred ceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
+. +..+.+|.+.|.++.||.||...+.++.+...+-
T Consensus 610 ~~-v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 610 SL-VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred cc-hhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 88 6889999999999999999999998887766443
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-32 Score=239.03 Aligned_cols=309 Identities=14% Similarity=0.254 Sum_probs=223.1
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccc---cCCcccceeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLKS 108 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~h~~~~~~~~~ 108 (490)
..|..-|.|+.|+|||+++|+++.||.|.+||=.+++. +..+. +|.
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-----------------------vg~l~~~~aHk-------- 235 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-----------------------VGELEDSDAHK-------- 235 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-----------------------EEEecCCCCcc--------
Confidence 36899999999999999999999999999999888874 34444 777
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCc---------------------
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI--------------------- 167 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 167 (490)
+.|.++.|+| |+..|++++.|.+++|||+.+.++.+...+....+ ...-|.+
T Consensus 236 ----GsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~-dqqvG~lWqkd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 236 ----GSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE-DQQVGCLWQKDHLITVSLSGTINYLNPS 308 (603)
T ss_pred ----ccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchh-ceEEEEEEeCCeEEEEEcCcEEEEeccc
Confidence 9999999997 66799999999999999999887766554332210 0000000
Q ss_pred -------cccc-cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeeccccccccc-----------------
Q 011257 168 -------FGSH-VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVA----------------- 222 (490)
Q Consensus 168 -------~~~~-~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~----------------- 222 (490)
...+ ....+++.+|+++ +|++++.||.|.-|+.-.+......+
T Consensus 309 d~~~~~~i~GHnK~ITaLtv~~d~~------------~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 309 DPSVLKVISGHNKSITALTVSPDGK------------TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred CCChhheecccccceeEEEEcCCCC------------EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 0000 1123555566665 77777777777777742221110000
Q ss_pred ------------------------------c--eee----------------eeccc--------cccceeEEEecCCCC
Q 011257 223 ------------------------------G--CRR----------------IYAHA--------HDYHINSISNNSDGE 246 (490)
Q Consensus 223 ------------------------------~--~~~----------------~~~~~--------~~~~v~~i~~~~~~~ 246 (490)
+ .+. .++.. -.....+++++|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 0 000 00000 112345778899999
Q ss_pred EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 247 ~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
.++.| .|+.|++|.+......-. ..+..|.++|++++|+||+ .+||+|...+.+.+||..+++.. ...
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee------~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~---~~~- 525 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEE------AKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVK---TNR- 525 (603)
T ss_pred EEEEecccceEEEEEecCCcccce------eeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCcee---cce-
Confidence 99998 899999999984332221 1356799999999999999 99999999999999999987642 222
Q ss_pred ccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeE
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
+.-|...|.+++|+|+..++|+|+ |..|.||+++.+.+.+.....|... |..+
T Consensus 526 -----------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~g---------------Vn~v 579 (603)
T KOG0318|consen 526 -----------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGG---------------VNSV 579 (603)
T ss_pred -----------eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccC---------------ceeE
Confidence 333558999999999999999996 7999999999866666666666655 4589
Q ss_pred EEcCCCCEEEEeecCCeEEEEecC
Q 011257 405 CLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 405 ~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
.|- |...|++.+.|..|++|++.
T Consensus 580 ~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEe-cCceEEeccCcceeEEeccc
Confidence 998 66788999999999999874
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.8e-32 Score=244.84 Aligned_cols=281 Identities=20% Similarity=0.346 Sum_probs=223.6
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|.++|++++|+|++++|++++.||.|++|++.+++. ...+..|.
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~------------ 51 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT------------ 51 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC------------
Confidence 6899999999999999999999999999999986652 34456676
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+..+.|+| ++.++++++.||.|++|++.+++.......+. .....+.|+++++
T Consensus 52 ~~i~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~-------- 106 (289)
T cd00200 52 GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRTLTGHT---------------SYVSSVAFSPDGR-------- 106 (289)
T ss_pred cceeEEEECC--CCCEEEEEcCCCeEEEEEcCcccceEEEeccC---------------CcEEEEEEcCCCC--------
Confidence 6788999997 45689999999999999999864443333221 1122678888866
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++++.++.+.+|++ . ..+....+ ..|...+.+++|+|++.+++++ .++.|++||++.... ..
T Consensus 107 ----~~~~~~~~~~i~~~~~-~------~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-~~-- 171 (289)
T cd00200 107 ----ILSSSSRDKTIKVWDV-E------TGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC-VA-- 171 (289)
T ss_pred ----EEEEecCCCeEEEEEC-C------CcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc-ce--
Confidence 7788888999999992 2 12223333 5778889999999999999988 599999999984433 22
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+..|...+.++.|+|++ +.+++++.|+.|++||++.++.. ..+..+ ...+.+++|+|
T Consensus 172 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~~~~~------------~~~i~~~~~~~ 229 (289)
T cd00200 172 -----TLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCL----GTLRGH------------ENGVNSVAFSP 229 (289)
T ss_pred -----eEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCcee----cchhhc------------CCceEEEEEcC
Confidence 235677899999999999 88999999999999999876532 333333 36899999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
++.++++++ ++.|++||+.+ ++++..+..|... |.+++|+|++++|++++.||.|++|+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNS---------------VTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCC-ceeEEEccccCCc---------------EEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999887 79999999986 7777777766544 45999999999999999999999996
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-33 Score=250.25 Aligned_cols=275 Identities=15% Similarity=0.226 Sum_probs=231.6
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|++.|.|+.|+|...+++++-.+|.|.|||.++... +..+.-.+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~------------ 55 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE------------ 55 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc------------
Confidence 4889999999999999999999999999999987662 34454444
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
-+|.+..|.+. -+++++|+.|..||+|+..+++....
T Consensus 56 ~PvRa~kfiaR--knWiv~GsDD~~IrVfnynt~ekV~~----------------------------------------- 92 (794)
T KOG0276|consen 56 VPVRAAKFIAR--KNWIVTGSDDMQIRVFNYNTGEKVKT----------------------------------------- 92 (794)
T ss_pred cchhhheeeec--cceEEEecCCceEEEEecccceeeEE-----------------------------------------
Confidence 66888889863 45999999999999999998764331
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+.+|.+.|++++.+|...+++++ +|-.|++||.+..=.+.+
T Consensus 93 ------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-- 134 (794)
T KOG0276|consen 93 ------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-- 134 (794)
T ss_pred ------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--
Confidence 26888999999999999999999 899999999985544444
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
++++|...|++++|+|...+.|++++-|++|++|.+.+... ..++++|. ..|+++.+-+
T Consensus 135 -----tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHe------------kGVN~Vdyy~ 193 (794)
T KOG0276|consen 135 -----TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHE------------KGVNCVDYYT 193 (794)
T ss_pred -----EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccc------------cCcceEEecc
Confidence 57999999999999998889999999999999999987653 35666554 8999999987
Q ss_pred --CCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 352 --NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 352 --~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
|..||++|+| .+++|||.++ ..+++++.+|...+ ..++|+|.=.++++|++||++|||+..
T Consensus 194 ~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 194 GGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred CCCcceEEecCCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEecCc
Confidence 5579999865 9999999998 99999999998763 489999999999999999999999998
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+-+. ..++.-..+++++++-.+.....+.+..
T Consensus 258 Ty~l-E~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 258 TYKL-EKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred ceeh-hhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 8765 4666666788888888877766665544
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-31 Score=226.84 Aligned_cols=305 Identities=21% Similarity=0.284 Sum_probs=228.5
Q ss_pred cccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccc
Q 011257 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (490)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 94 (490)
..|+.++ ++ ...+..+|++.|+|+.||.||.+||||+-+|.|+||+..++... .
T Consensus 89 flW~~~~--ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~-----------------------~ 142 (399)
T KOG0296|consen 89 FLWDIST--GE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ-----------------------W 142 (399)
T ss_pred EEEEccC--Cc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE-----------------------E
Confidence 5688887 34 56677899999999999999999999999999999999987632 1
Q ss_pred ccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccccc
Q 011257 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (490)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (490)
.+...- +.|--++|+| .+..|+.|+.||.+.+|.+.++...++...+. ..+
T Consensus 143 ~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~---------------~~c 193 (399)
T KOG0296|consen 143 KLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGHN---------------SPC 193 (399)
T ss_pred Eeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCCC---------------CCc
Confidence 221111 4477899998 56699999999999999999865444444332 222
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (490)
.+-.|.|+|+ .++++..||+|++|+.... .+.............++.++..+..++.| .+
T Consensus 194 t~G~f~pdGK------------r~~tgy~dgti~~Wn~ktg-------~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 194 TCGEFIPDGK------------RILTGYDDGTIIVWNPKTG-------QPLHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred ccccccCCCc------------eEEEEecCceEEEEecCCC-------ceeEEecccccCcCCccccccccceeEeccCC
Confidence 3667899999 8999999999999993222 22222212223456788888899999999 78
Q ss_pred CcEEEEEcCCCCceeeeee-cCCCccCCCCCceEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 254 LRINLWNLEISNQSFNIVD-VKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
+.+++-+..+++ ...... ..+.-...+...+.++.+.|... .++|+|+-||+|.|||+...+. +..-.|.
T Consensus 255 ~~~~~~~~~sgK-Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-----R~~c~he- 327 (399)
T KOG0296|consen 255 GVACGVNNGSGK-VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-----RHICEHE- 327 (399)
T ss_pred ccEEEEccccce-EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----heeccCC-
Confidence 888888776443 333222 11222234555555666555431 5789999999999999988653 3433333
Q ss_pred CCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
.+|..+.|-+ ..+|+++ .+|.|+.||.++ ++++.++.+|... |.+++++|+
T Consensus 328 -----------~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt-G~l~~~y~GH~~~---------------Il~f~ls~~ 379 (399)
T KOG0296|consen 328 -----------DGVTKLKWLN-TDYLLTACANGKVRQWDART-GQLKFTYTGHQMG---------------ILDFALSPQ 379 (399)
T ss_pred -----------CceEEEEEcC-cchheeeccCceEEeeeccc-cceEEEEecCchh---------------eeEEEEcCC
Confidence 7899999998 6677775 679999999998 9999999999976 569999999
Q ss_pred CCEEEEeecCCeEEEEecC
Q 011257 410 GGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~ 428 (490)
.++++|+|.|++.+||++.
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999875
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.3e-31 Score=269.14 Aligned_cols=308 Identities=14% Similarity=0.210 Sum_probs=217.7
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
....|.+.|++++|+|+|++||+|+.|+.|+||+........... . .....+.+ .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--------------~-~~~~~~~~-~--------- 532 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--------------H-YPVVELAS-R--------- 532 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--------------c-cceEEecc-c---------
Confidence 345689999999999999999999999999999976421100000 0 00111222 2
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec-cCCcccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGER 188 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~ 188 (490)
..|.+++|+|. .+.+|++++.||+|++||+.+++.......+ .+.+. +++|+| ++.
T Consensus 533 ---~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H--------~~~V~-------~l~~~p~~~~---- 589 (793)
T PLN00181 533 ---SKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTEMKEH--------EKRVW-------SIDYSSADPT---- 589 (793)
T ss_pred ---CceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEEecCC--------CCCEE-------EEEEcCCCCC----
Confidence 56899999873 4578999999999999999988765544332 12233 788886 566
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEec-CCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
+|++++.|+.|++||+ .. ..+...+ .. ...+.++.|+ +++..|++| .|+.|++||++....
T Consensus 590 --------~L~Sgs~Dg~v~iWd~-~~------~~~~~~~-~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 590 --------LLASGSDDGSVKLWSI-NQ------GVSIGTI-KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred --------EEEEEcCCCEEEEEEC-CC------CcEEEEE-ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 8999999999999993 21 1223333 22 3578899995 579999999 899999999985443
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc--cccccceeccccCCCccccccccccce
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
... .+.+|...|.++.|. ++ ..|++++.|++|++||++.+.. ...++..+ .+|...+
T Consensus 653 ~~~-------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~------------~gh~~~i 711 (793)
T PLN00181 653 PLC-------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSF------------MGHTNVK 711 (793)
T ss_pred cce-------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEE------------cCCCCCe
Confidence 222 356899999999997 45 6899999999999999985421 01123334 3455789
Q ss_pred EEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecc-ccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
..++|+|++.+|++|+ |+.|++|+... ..++..+..... .... ......-..|.+++|+|++..|++|+.||.|
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~---~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSG---LEVDDASQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCcccc---cccCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence 9999999999999985 69999999875 444433322111 0000 0001111236799999999999999999999
Q ss_pred EEEec
Q 011257 423 RVFGC 427 (490)
Q Consensus 423 ~vw~~ 427 (490)
+||++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 99986
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-32 Score=249.29 Aligned_cols=294 Identities=20% Similarity=0.272 Sum_probs=233.9
Q ss_pred ccccccEEEEEEC-CCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 32 VQEVDIISAIEFD-KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 32 ~~h~~~V~~~~~s-~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
++..+.|.+++|- |+.++||.+++.+.+++|+..+..+ ..+.||+
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------------~ii~GH~---------- 365 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------------QIIPGHT---------- 365 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce------------------------EEEeCch----------
Confidence 3557889999885 5778999999999999998876652 3578999
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEe--eeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF--DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
+.|.++... ..|.+|++|+.|.++++|.++++..+... ....+ .+.+ .+++++..+..
T Consensus 366 --e~vlSL~~~--~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH------~~sv-------gava~~~~~as--- 425 (775)
T KOG0319|consen 366 --EAVLSLDVW--SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH------TNSV-------GAVAGSKLGAS--- 425 (775)
T ss_pred --hheeeeeec--ccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc------cccc-------ceeeecccCcc---
Confidence 889999832 35679999999999999999554322211 11111 1122 25566555554
Q ss_pred ccccCCCCccccCCCCCcEEEeeeeccccccc--ccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
++++++.|.++++|++....+... ...+.. ....|...|++++.+|+.+++|+| .|.+.++|+++ ..
T Consensus 426 --------ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~-t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~ 495 (775)
T KOG0319|consen 426 --------FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRY-TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QL 495 (775)
T ss_pred --------EEEEecCCceEEEecCCCcccccccceehhhH-HHHhhcccccceEecCCCceEEecccccceeeeccc-Cc
Confidence 899999999999999433222211 111111 226899999999999999999999 89999999999 33
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
.... .+.+|...|+++.|+|.. ++++|++.|++|+||.+.+... +++|++|. ..|.
T Consensus 496 ~l~~-------vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSC----lkT~eGH~------------~aVl 551 (775)
T KOG0319|consen 496 RLLG-------VLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSC----LKTFEGHT------------SAVL 551 (775)
T ss_pred eEEE-------EeeCCccceEEEEecccc-ceeEeccCCceEEEEEecccee----eeeecCcc------------ceeE
Confidence 3333 578999999999999998 9999999999999999999764 57777765 8999
Q ss_pred EEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 346 ~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
.+.|-.+|+.|+++ +||.|++|++++ +.++.++..|.+. ||+++.+|...+++||+.||.|.+
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt-~eC~~tlD~H~Dr---------------vWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKT-NECEMTLDAHNDR---------------VWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccc-hhhhhhhhhccce---------------eEEEeecCccceeEecCCCeEEEE
Confidence 99999999999986 789999999998 9999999999987 789999999999999999999999
Q ss_pred EecCC
Q 011257 425 FGCSE 429 (490)
Q Consensus 425 w~~~~ 429 (490)
|.=.+
T Consensus 616 wkD~T 620 (775)
T KOG0319|consen 616 WKDVT 620 (775)
T ss_pred eecCc
Confidence 97544
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=228.21 Aligned_cols=291 Identities=13% Similarity=0.191 Sum_probs=234.3
Q ss_pred eeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCC
Q 011257 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (490)
Q Consensus 83 ~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 162 (490)
...|+..+++...+++|. +.|.++++-| .+++|++|+.|++|+|||+.+++++.....+..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vavdP--~n~wf~tgs~DrtikIwDlatg~LkltltGhi~----- 194 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE----- 194 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEeeCC--CceeEEecCCCceeEEEEcccCeEEEeecchhh-----
Confidence 345667788889999999 9999999987 356999999999999999999998877664432
Q ss_pred CCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEec
Q 011257 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242 (490)
Q Consensus 163 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 242 (490)
....+++|+... |+++++.|+.|+.||+ .. .+.++.+ .+|-..|.+++.+
T Consensus 195 ----------~vr~vavS~rHp------------YlFs~gedk~VKCwDL-e~------nkvIR~Y-hGHlS~V~~L~lh 244 (460)
T KOG0285|consen 195 ----------TVRGVAVSKRHP------------YLFSAGEDKQVKCWDL-EY------NKVIRHY-HGHLSGVYCLDLH 244 (460)
T ss_pred ----------eeeeeeecccCc------------eEEEecCCCeeEEEec-hh------hhhHHHh-ccccceeEEEecc
Confidence 122677777777 9999999999999992 22 2233444 7999999999999
Q ss_pred CCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccc
Q 011257 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (490)
Q Consensus 243 ~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (490)
|.-..|++| .|.++++||+++..+.. .+.+|..+|.++.+.|.+ ..+++|+.|++|++||++.++.
T Consensus 245 PTldvl~t~grDst~RvWDiRtr~~V~--------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt---- 311 (460)
T KOG0285|consen 245 PTLDVLVTGGRDSTIRVWDIRTRASVH--------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKT---- 311 (460)
T ss_pred ccceeEEecCCcceEEEeeecccceEE--------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCce----
Confidence 999999999 89999999999665543 468999999999999988 7999999999999999999864
Q ss_pred cceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccce
Q 011257 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
..++..|. ..+++++.+|....+|+++-..|+-|++.. +..++.+.+|....
T Consensus 312 ~~tlt~hk------------ksvral~lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~ii--------------- 363 (460)
T KOG0285|consen 312 MITLTHHK------------KSVRALCLHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAII--------------- 363 (460)
T ss_pred eEeeeccc------------ceeeEEecCCchhhhhccCCccceeccCCc-cchhhcccccccee---------------
Confidence 24444444 789999999999999998878999999996 88899999998773
Q ss_pred eeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEe---c-----cCCCceEEEEEccCCCCCCCCccCcce
Q 011257 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL---E-----ASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~---~-----~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
.+++...| .++++|++.|.+.+||.++|-. .+.. . .....|.+.+|...|.-...+..++..
T Consensus 364 ntl~~nsD-~v~~~G~dng~~~fwdwksg~n-yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtI 433 (460)
T KOG0285|consen 364 NTLSVNSD-GVLVSGGDNGSIMFWDWKSGHN-YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTI 433 (460)
T ss_pred eeeeeccC-ceEEEcCCceEEEEEecCcCcc-cccccccccCCccccccceeEEeecccCceEEeccCCcce
Confidence 47777755 5788899999999999999854 2322 1 123567888888877766666555543
No 39
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.6e-33 Score=236.48 Aligned_cols=242 Identities=17% Similarity=0.350 Sum_probs=198.9
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-.|..+|+++.|+++|.++++|+.+|.|++|+..-.. +..++.|..
T Consensus 135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------------------Vk~~~ahh~---------- 180 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------------------VKIIQAHHA---------- 180 (464)
T ss_pred hhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------------------hHHhhHhhh----------
Confidence 4699999999999999999999999999999976443 444555542
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+.|++++|+| ++..|++++.||+|+|||....+...+
T Consensus 181 -eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~v---------------------------------------- 217 (464)
T KOG0284|consen 181 -EAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERV---------------------------------------- 217 (464)
T ss_pred -hhhheeccCC--CCceeEEecCCCeEEEEeccCCchhhe----------------------------------------
Confidence 7899999998 567999999999999999876542221
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
+.+|.-.|.+++|+|.-..++++ .|..|++||.+++. ++.
T Consensus 218 -------------------------------------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~- 258 (464)
T KOG0284|consen 218 -------------------------------------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLA- 258 (464)
T ss_pred -------------------------------------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcc-hhh-
Confidence 26788899999999999999998 89999999999554 433
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
++.+|...|..+.|+|++ ++|++++.|..++++|+++.+. ++.+.+|+ ..++++.|+
T Consensus 259 ------tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkE----l~~~r~Hk------------kdv~~~~Wh 315 (464)
T KOG0284|consen 259 ------TLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKE----LFTYRGHK------------KDVTSLTWH 315 (464)
T ss_pred ------hhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHH----HHHhhcch------------hhheeeccc
Confidence 578899999999999999 9999999999999999996443 46666655 789999999
Q ss_pred CCC-CEEEEE-cCCeEEEEeccCCCCceeeee-eeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 351 RNG-RHILSR-DYMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 351 p~g-~~l~sg-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
|-. .+|++| .||.|..|.+.. .+++..+. +|... |++++|+|-|.+|++|+.|.++++|.-
T Consensus 316 P~~~~lftsgg~Dgsvvh~~v~~-~~p~~~i~~AHd~~---------------iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 316 PLNESLFTSGGSDGSVVHWVVGL-EEPLGEIPPAHDGE---------------IWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccccceeeccCCCceEEEeccc-cccccCCCcccccc---------------eeeeeccccceeEeecCCCcceeeecc
Confidence 944 455554 789999999985 45554443 34433 789999999999999999999999975
Q ss_pred C
Q 011257 428 S 428 (490)
Q Consensus 428 ~ 428 (490)
.
T Consensus 380 ~ 380 (464)
T KOG0284|consen 380 N 380 (464)
T ss_pred C
Confidence 4
No 40
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.2e-31 Score=211.98 Aligned_cols=277 Identities=14% Similarity=0.238 Sum_probs=220.7
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
+...|...|.+++|+.+|..||+|+.|+++.+|+++..+.. ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~--------- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT--------- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence 44578999999999999999999999999999999866421 223467888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+.|-.++|.|.. ...|++++.|.+|++||++.++........... +.+.|+|+|.
T Consensus 65 ---~svdql~w~~~~-~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en----------------i~i~wsp~g~----- 119 (313)
T KOG1407|consen 65 ---DSVDQLCWDPKH-PDLFATASGDKTIRIWDIRSGKCTARIETKGEN----------------INITWSPDGE----- 119 (313)
T ss_pred ---cchhhheeCCCC-CcceEEecCCceEEEEEeccCcEEEEeeccCcc----------------eEEEEcCCCC-----
Confidence 889999999844 568999999999999999999877765554332 1679999999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
++++++.|..|.+.| ......... ......+..++|+.++.+++.. ..|+|.+.....-+...
T Consensus 120 -------~~~~~~kdD~it~id-~r~~~~~~~--------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 120 -------YIAVGNKDDRITFID-ARTYKIVNE--------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred -------EEEEecCcccEEEEE-ecccceeeh--------hcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc
Confidence 899999999999988 222222111 1222567788999888877776 77999999887443332
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
.+..|.....|+.|+|+| ++||+|+.|..+.+||+..-- | .+.+.... -+|+.|+
T Consensus 184 --------si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-C---~R~isRld------------wpVRTlS 238 (313)
T KOG1407|consen 184 --------SIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI-C---ERCISRLD------------WPVRTLS 238 (313)
T ss_pred --------ccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh-h---heeecccc------------CceEEEE
Confidence 568899999999999999 999999999999999998642 3 35555544 6899999
Q ss_pred ECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 349 ~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
||.||++||+|+ |..|-|=++.+ +..+..++..... ..++|+|...+||.+++|
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vet-Gd~~~eI~~~~~t----------------~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVET-GDRVWEIPCEGPT----------------FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCcceeeccCccceEEeEeccc-CCeEEEeeccCCc----------------eeEEecCCCceeeEEecC
Confidence 999999999986 59999999998 8888777655433 389999999999988865
No 41
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-31 Score=227.60 Aligned_cols=302 Identities=17% Similarity=0.275 Sum_probs=235.2
Q ss_pred cccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccc
Q 011257 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (490)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 94 (490)
+.-.+-+-+..+.+.+.+.|.+.|+++... ++++++|++||.+++||..... ..
T Consensus 85 leIEYv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~------------------------~~ 138 (423)
T KOG0313|consen 85 LEIEYVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS------------------------IK 138 (423)
T ss_pred eEEEEEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce------------------------EE
Confidence 334455555667777888999999999988 6799999999999999986544 46
Q ss_pred ccccCCcccceeeeeeeccceeEEEEeec-CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccc
Q 011257 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (490)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~V~~v~~~p~-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (490)
.+.||. ++|.+++|.-. +....|++++.|.++++|.++.+..+...
T Consensus 139 ~~~Ght------------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~--------------------- 185 (423)
T KOG0313|consen 139 TIVGHT------------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA--------------------- 185 (423)
T ss_pred EEecCC------------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH---------------------
Confidence 688999 88998888742 22336999999999999998776532100
Q ss_pred cCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c
Q 011257 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (490)
Q Consensus 174 ~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (490)
.+. ..||...|.+++..++|..+++| .
T Consensus 186 ---------------------------------------------------~~~-~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 186 ---------------------------------------------------LKV-CRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred ---------------------------------------------------HhH-hcccccceeEEEecCCCCeEEeecc
Confidence 000 14899999999999999999999 8
Q ss_pred CCcEEEEEcCCCC-ceeeee----------------ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc
Q 011257 253 DLRINLWNLEISN-QSFNIV----------------DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 253 d~~i~~wd~~~~~-~~~~~~----------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (490)
|..|++|+..... ....-. ......+.+|.++|.++.|++. ..+++++.|.+|+.||+.++
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecc
Confidence 9999999933211 000000 0111257899999999999994 59999999999999999998
Q ss_pred cccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCC--ceeeeeeecccccccccc
Q 011257 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG--PVATFQVHEHLRPKLCDL 392 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 392 (490)
... .++... ..+.++..+|..++|++| +|..+++||.+++.. ..+.+.+|...+
T Consensus 292 ~~~----~~~~~~-------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV------ 348 (423)
T KOG0313|consen 292 GLK----STLTTN-------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV------ 348 (423)
T ss_pred cce----eeeecC-------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh------
Confidence 754 333333 478999999999999997 579999999987433 446888999874
Q ss_pred ccCCCccceeeEEEcCCCC-EEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 393 YENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 393 ~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
.++.|+|... .|++|+.||++++||+++.+..+..+.+|.+.|.++.|...+..+.+++.
T Consensus 349 ---------ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 349 ---------SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred ---------hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCc
Confidence 4999999665 58899999999999999988668999999999999999987666555543
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=211.59 Aligned_cols=288 Identities=13% Similarity=0.238 Sum_probs=214.2
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
+..+++|. +++..++|+|.. |..|++++.|+.|++|+...+ ........... +.
T Consensus 7 ~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~-----hk------- 61 (312)
T KOG0645|consen 7 EQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDG-----HK------- 61 (312)
T ss_pred EEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCcEEEEEecccc-----ch-------
Confidence 45678888 889999999832 668999999999999999853 22222111100 11
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
.....++|+|.|+ +|++++.|.++.||. +.....+|..++ .||...|.+++|+++|.+||++
T Consensus 62 rsVRsvAwsp~g~------------~La~aSFD~t~~Iw~-----k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATC 123 (312)
T KOG0645|consen 62 RSVRSVAWSPHGR------------YLASASFDATVVIWK-----KEDGEFECVATL-EGHENEVKCVAWSASGNYLATC 123 (312)
T ss_pred heeeeeeecCCCc------------EEEEeeccceEEEee-----cCCCceeEEeee-eccccceeEEEEcCCCCEEEEe
Confidence 1223899999999 899999999999997 223345666665 8999999999999999999999
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.|..|-+|.+. .+..+... ..+++|...|..+.|+|.. .+|++++.|.+|++|+-..+. -.....++.+|
T Consensus 124 SRDKSVWiWe~d-eddEfec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd-dW~c~~tl~g~-- 194 (312)
T KOG0645|consen 124 SRDKSVWIWEID-EDDEFECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD-DWECVQTLDGH-- 194 (312)
T ss_pred eCCCeEEEEEec-CCCcEEEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC-CeeEEEEecCc--
Confidence 89999999998 33334333 2478999999999999998 899999999999999876322 12223455544
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
...|.+++|+|.|..|++++| ++++||-+.. .-+ ..|... +..+.|.
T Consensus 195 ----------~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-~~~----~~~sr~---------------~Y~v~W~-- 242 (312)
T KOG0645|consen 195 ----------ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-DLS----GMHSRA---------------LYDVPWD-- 242 (312)
T ss_pred ----------cceEEEEEecCCCceEEEecCCcceEeeeecc-Ccc----hhcccc---------------eEeeeec--
Confidence 478999999999999999865 9999999653 110 112221 3378887
Q ss_pred CCEEEEeecCCeEEEEecCCCc------eeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 410 GGRVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
...|++++.|+.|++|.-..+- .....-..|...|+++.|.|....++.+..++|
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCc
Confidence 5689999999999999877531 112345678899999999996555555554443
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-31 Score=246.03 Aligned_cols=326 Identities=13% Similarity=0.223 Sum_probs=251.3
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
..-.|++-- ......+.+|.++|..++|+|++.++++|+.|..|++|++.+.++
T Consensus 32 ~IQlWDYRM---~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc----------------------- 85 (1202)
T KOG0292|consen 32 VIQLWDYRM---GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC----------------------- 85 (1202)
T ss_pred eeeeehhhh---hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-----------------------
Confidence 344577654 223345668999999999999999999999999999999998775
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
+.++.||- +-|..+.|++. -.++++++.|.+|+||+++++++..+.+.+.+ .+
T Consensus 86 lftL~GHl------------DYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnH--------YV----- 138 (1202)
T KOG0292|consen 86 LFTLLGHL------------DYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--------YV----- 138 (1202)
T ss_pred hhhhcccc------------ceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCce--------EE-----
Confidence 47789998 77999999974 45999999999999999999999888776643 11
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccc---c----------------c---cceeeeecc
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN---L----------------V---AGCRRIYAH 230 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~---~----------------~---~~~~~~~~~ 230 (490)
.+..|+|... ++++++-|.+|++||+ .+.... . . -...+..+.
T Consensus 139 --McAqFhptED------------lIVSaSLDQTVRVWDi-sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 139 --MCAQFHPTED------------LIVSASLDQTVRVWDI-SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred --EeeccCCccc------------eEEEecccceEEEEee-cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 2556777655 8999999999999995 221110 0 0 112334458
Q ss_pred ccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEE
Q 011257 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 309 (490)
||...|+.++|+|.-.++++| +|..|++|.+. ..+...+ .+..+|.+.|.++-|+|.. .++++.+.|++|++
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn-etKaWEv-----DtcrgH~nnVssvlfhp~q-~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN-ETKAWEV-----DTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRV 276 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEec-cccceee-----hhhhcccCCcceEEecCcc-ceeEecCCCccEEE
Confidence 999999999999999999999 99999999998 4444433 2678999999999999998 89999999999999
Q ss_pred EeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccc
Q 011257 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
||+...+. +.+|.... +..+.++.+|..+++++|-|+-+.+|.+.. .++
T Consensus 277 wDm~kRt~----v~tfrren------------dRFW~laahP~lNLfAAgHDsGm~VFkleR-Erp-------------- 325 (1202)
T KOG0292|consen 277 WDMTKRTS----VQTFRREN------------DRFWILAAHPELNLFAAGHDSGMIVFKLER-ERP-------------- 325 (1202)
T ss_pred Eecccccc----eeeeeccC------------CeEEEEEecCCcceeeeecCCceEEEEEcc-cCc--------------
Confidence 99987654 46665444 678999999999999999998888888875 222
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCcee-eeEeccC---CCceEEEEEccCCCCCCCCc
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEAS---KNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~---~~~v~~~~~sp~~~~~~~~~ 460 (490)
+.+.+ ++.|...- |..|+.+|+.+.+.. +..++.. ..+.+++.++|....++..+
T Consensus 326 -------------a~~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 326 -------------AYAVN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred -------------eEEEc--CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 23333 33343333 889999999975421 2333333 37888999999888777664
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=248.79 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=202.2
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcc------------------------------ccccccc-
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR------------------------------RDLEMMD- 81 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~------------------------------~~~~~~~- 81 (490)
+|.+.|.++.||+||+|||+|+.|+.|+||.+...+...... ....+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 699999999999999999999999999999997721100000 0000000
Q ss_pred -ce-----eecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeec
Q 011257 82 -YS-----MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (490)
Q Consensus 82 -~~-----~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 155 (490)
.+ -+|...-+.+..|.||. +.|..+.|+. ..+|++++.|.+||||++....+..+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccccc---CCeeEeccccccEEeecCCCcceeeE----
Confidence 11 11112225567788998 8899999984 56999999999999999887664442
Q ss_pred cCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccc
Q 011257 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (490)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (490)
..|...
T Consensus 406 --------------------------------------------------------------------------F~Hndf 411 (712)
T KOG0283|consen 406 --------------------------------------------------------------------------FSHNDF 411 (712)
T ss_pred --------------------------------------------------------------------------EecCCe
Confidence 256788
Q ss_pred eeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 236 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 236 v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
|+|++|+| |.++|++| -|+.|+||++. ..+.... .....-|++++|.|+| ...+.|+.+|..++|+..
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~-d~~Vv~W--------~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSIS-DKKVVDW--------NDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecC-cCeeEee--------hhhhhhheeEEeccCC-ceEEEEEeccEEEEEEcc
Confidence 99999999 78899999 79999999998 4444332 3335789999999999 999999999999999998
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCC--CEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g--~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (490)
..+.... ..+..+... -..| ..|+.+.|.|.. +.|++..|..|+|||.+. ..++..+++......
T Consensus 482 ~lk~~~~--~~I~~~~~K-----k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~S---- 548 (712)
T KOG0283|consen 482 GLKLVSD--FHIRLHNKK-----KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSS---- 548 (712)
T ss_pred CCeEEEe--eeEeeccCc-----cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCc----
Confidence 7654311 111111111 1112 279999999843 488888999999999986 788888887765432
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
-....|+.||++|+++++|..|+||++.
T Consensus 549 ---------Q~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 549 ---------QISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ---------ceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 1378899999999999999999999984
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.3e-31 Score=233.34 Aligned_cols=323 Identities=18% Similarity=0.245 Sum_probs=237.1
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-.|+..|+++++.|.|..|++|+.|.+|++||+...... .+.++.+....+|.
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------------~~~fr~l~P~E~h~----------- 216 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------------MRSFRQLQPCETHQ----------- 216 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------------chhhhccCcccccc-----------
Confidence 357889999999999999999999999999999865421 11233344445565
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
|++++|+| .+..|++.+.....+|+|-.+.++....+...
T Consensus 217 ---i~sl~ys~--Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQ----------------------------------- 256 (641)
T KOG0772|consen 217 ---INSLQYSV--TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQ----------------------------------- 256 (641)
T ss_pred ---cceeeecC--CCCeEEEEecCcceeEEccCCceeeeeeccch-----------------------------------
Confidence 99999997 45588888888899999988766544332211
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
||. -+++ .++|...+++.+|+|+. +.|+++ .||++++||+.......+
T Consensus 257 -----YI~--------Dm~n-----------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 257 -----YIR--------DMYN-----------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred -----hhh--------hhhc-----------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 111 0000 37999999999999974 456666 899999999997777777
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc--ceEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDI 347 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~l 347 (490)
++..+ ...+..-+++.++|+|++ .+||+|..||.|.+||...... ++...+. ..|.. .|++|
T Consensus 307 Vik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v--~p~~~vk-----------~AH~~g~~Itsi 370 (641)
T KOG0772|consen 307 VIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV--RPVMKVK-----------DAHLPGQDITSI 370 (641)
T ss_pred EEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc--ccceEee-----------eccCCCCceeEE
Confidence 65443 345667889999999999 8999999999999999865432 1112221 12333 79999
Q ss_pred EECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec------CC
Q 011257 348 KFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SN 420 (490)
Q Consensus 348 ~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg 420 (490)
.||+||++|++ |.|+++++||++...+++....+-... ++-+.++|||+.++|++|+. .|
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCCc
Confidence 99999999999 568999999999877777766554322 12358999999999999874 47
Q ss_pred eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcce--ecCeeeccccceeeee
Q 011257 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV--RRGMFTHIQLLCIFIQ 481 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 481 (490)
.+.+||..+-+. ++.+......|..+.|+|.-+....++.++.. ...-..+.+..|+++.
T Consensus 438 ~L~f~d~~t~d~-v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~ 499 (641)
T KOG0772|consen 438 TLFFFDRMTLDT-VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVV 499 (641)
T ss_pred eEEEEeccceee-EEEecCCCceEEEEeecchhhheeeecCCCceEEEECccccccchhheee
Confidence 899999998776 57777778899999999998887777665432 2223334455555443
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.6e-32 Score=226.53 Aligned_cols=277 Identities=16% Similarity=0.304 Sum_probs=214.0
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.....|+|+.+.. ..+++|..|.+|+|||..+.. .+..+.||+
T Consensus 195 e~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------ 237 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------ 237 (499)
T ss_pred ccCCceEEEEecc--hhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------
Confidence 3567899999874 479999999999999988655 457799999
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.|+.|. ...+++|+.|.+|++||++++++....-.+-. .+. .+.|+
T Consensus 238 GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHce--------aVL-------hlrf~------------ 286 (499)
T KOG0281|consen 238 GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE--------AVL-------HLRFS------------ 286 (499)
T ss_pred CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcc--------eeE-------EEEEe------------
Confidence 999999995 46899999999999999999987665444321 010 22222
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+.++++++.|.++.+||+... ....+.+. +.||...|+.+.|+ .++++++ .|.+|++|++. ....++
T Consensus 287 --ng~mvtcSkDrsiaVWdm~sp----s~it~rrV-LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s-t~efvR-- 354 (499)
T KOG0281|consen 287 --NGYMVTCSKDRSIAVWDMASP----TDITLRRV-LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS-TCEFVR-- 354 (499)
T ss_pred --CCEEEEecCCceeEEEeccCc----hHHHHHHH-Hhhhhhheeeeccc--cceEEEecCCceEEEEecc-ceeeeh--
Confidence 338999999999999993322 23334444 38999999999986 4589998 89999999998 444444
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
++.+|...|.|+.+. + +++++|+.|.+|++||+..|.. ++.+++|+ .-|.++.|.
T Consensus 355 -----tl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvLeGHE------------eLvRciRFd- 409 (499)
T KOG0281|consen 355 -----TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGHE------------ELVRCIRFD- 409 (499)
T ss_pred -----hhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHHhchH------------Hhhhheeec-
Confidence 578999999988875 4 8999999999999999999874 57777765 789999996
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCc--------eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGP--------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
.+.+++|. ||+|++||+.....+ +.++..|.+. |+.+.| |...+++.+.|.+|
T Consensus 410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR---------------VFrLQF--D~fqIvsssHddtI 471 (499)
T KOG0281|consen 410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR---------------VFRLQF--DEFQIISSSHDDTI 471 (499)
T ss_pred -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccce---------------eEEEee--cceEEEeccCCCeE
Confidence 67888875 699999999862221 2233333332 668888 66789999999999
Q ss_pred EEEecCCCce
Q 011257 423 RVFGCSEGSA 432 (490)
Q Consensus 423 ~vw~~~~~~~ 432 (490)
.|||..++..
T Consensus 472 LiWdFl~~~~ 481 (499)
T KOG0281|consen 472 LIWDFLNGPP 481 (499)
T ss_pred EEEEcCCCCc
Confidence 9999998754
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-30 Score=244.14 Aligned_cols=289 Identities=16% Similarity=0.232 Sum_probs=235.5
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.+..|..++|+|...+++++--.|.|++||..-+. ++..|..|. +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence 46789999999999999999999999999998665 356788898 9
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
+|..|+|+|.. .+|++|+.|-.|++|+..+.++.-
T Consensus 53 pVRgv~FH~~q--plFVSGGDDykIkVWnYk~rrclf------------------------------------------- 87 (1202)
T KOG0292|consen 53 PVRGVDFHPTQ--PLFVSGGDDYKIKVWNYKTRRCLF------------------------------------------- 87 (1202)
T ss_pred ccceeeecCCC--CeEEecCCccEEEEEecccceehh-------------------------------------------
Confidence 99999999854 499999999999999998766322
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+ +.+|-+.|+.+.|++.-.+++++ +|.+|++|+.. .+.++.
T Consensus 88 ---------------------------------t-L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~ia--- 129 (1202)
T KOG0292|consen 88 ---------------------------------T-LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIA--- 129 (1202)
T ss_pred ---------------------------------h-hccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEE---
Confidence 1 36888999999999999999999 89999999998 445555
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccce-------------eccccCCCccccccc
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-------------FEEQEAPGTRSFFTE 339 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 339 (490)
.+.+|...|+|..|+|.. .++++++-|-+||+||+..-+........ +-+..+-.-+.++.|
T Consensus 130 ----vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 130 ----VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred ----EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 368999999999999988 89999999999999998753221100000 111111122345788
Q ss_pred cccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCC--ceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 011257 340 IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 416 (490)
|...|+.++|+|.-..|++|+| ..|++|.+.- .+ .+.+..+|.+. |.++-|+|...++++.
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWEvDtcrgH~nn---------------Vssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWEVDTCRGHYNN---------------VSSVLFHPHQDLILSN 268 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEecc-ccceeehhhhcccCC---------------cceEEecCccceeEec
Confidence 9999999999999999999865 9999999873 33 34567777766 4599999999999999
Q ss_pred ecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 417 ~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
++|++|+|||+...+. +++++...+.-+.++-+|..+..+.+-.+
T Consensus 269 sEDksirVwDm~kRt~-v~tfrrendRFW~laahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTS-VQTFRRENDRFWILAAHPELNLFAAGHDS 313 (1202)
T ss_pred CCCccEEEEecccccc-eeeeeccCCeEEEEEecCCcceeeeecCC
Confidence 9999999999998877 68888888899999999998876655443
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=1.1e-31 Score=215.23 Aligned_cols=281 Identities=14% Similarity=0.213 Sum_probs=235.9
Q ss_pred cccccccEEEEEECC---CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 31 EVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~---dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
=.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++. .+.+|.||.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----------------------wigtfeghk------- 59 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----------------------WIGTFEGHK------- 59 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----------------------cEEeeeccC-------
Confidence 457999999999997 89899999999998888877776 357899999
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
+.|.+.+.+. +..+-++++.|=+-++||.-++....
T Consensus 60 -----gavw~~~l~~--na~~aasaaadftakvw~a~tgdelh------------------------------------- 95 (334)
T KOG0278|consen 60 -----GAVWSATLNK--NATRAASAAADFTAKVWDAVTGDELH------------------------------------- 95 (334)
T ss_pred -----cceeeeecCc--hhhhhhhhcccchhhhhhhhhhhhhh-------------------------------------
Confidence 8899888864 44567788899999999987764322
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
...|...|.+++|+.|.+.|++| .+..+++||++..+.
T Consensus 96 -----------------------------------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 96 -----------------------------------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred -----------------------------------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence 13566778999999999999999 899999999986654
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
.. .++.+|.+.|..+.|.... +.|++++.|++||+||.+++... ..+... .+|++
T Consensus 135 pp-------~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v----~sL~~~-------------s~VtS 189 (334)
T KOG0278|consen 135 PP-------KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEV----QSLEFN-------------SPVTS 189 (334)
T ss_pred Cc-------hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEE----EEEecC-------------CCCcc
Confidence 43 3678999999999999887 89999999999999999998753 444443 57999
Q ss_pred EEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 347 l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+.++++|++|..+..+.|.+||..+ -.+++.++.... |.+.+.+|+..++++|++|..++.||
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred eeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEEe
Confidence 9999999999998889999999997 777777766554 34889999999999999999999999
Q ss_pred cCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 427 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
+.+|+......++|.++|.++.|+|||...+.++-++..+.+
T Consensus 253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 999988444459999999999999999999998887765544
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.1e-30 Score=236.99 Aligned_cols=285 Identities=12% Similarity=0.185 Sum_probs=226.4
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
.|...|.+++++. .+.++..+..+.|++|+..+.++........ ..+..|-|.++
T Consensus 371 GHR~dVRsl~vS~---d~~~~~Sga~~SikiWn~~t~kciRTi~~~y-----------------~l~~~Fvpgd~----- 425 (888)
T KOG0306|consen 371 GHRSDVRSLCVSS---DSILLASGAGESIKIWNRDTLKCIRTITCGY-----------------ILASKFVPGDR----- 425 (888)
T ss_pred cchhheeEEEeec---CceeeeecCCCcEEEEEccCcceeEEecccc-----------------EEEEEecCCCc-----
Confidence 3667788888873 3345555567899999999988776554321 12556778777
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC----
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS---- 264 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~---- 264 (490)
++++|...|.+.+||+ ..... ..+ ..+|.+.+++++.+||++.+++| .|.+|++||..-.
T Consensus 426 -------~Iv~G~k~Gel~vfdl-aS~~l------~Et-i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 426 -------YIVLGTKNGELQVFDL-ASASL------VET-IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred -------eEEEeccCCceEEEEe-ehhhh------hhh-hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 8999999999999993 33222 112 26999999999999999999999 8999999997521
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+...+.+.++..+.-.....|.|+.+|||+ ++|+.+--|.++++|-+.+-+.. -.+- ||.-||
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFf----lsLY------------GHkLPV 553 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFF----LSLY------------GHKLPV 553 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeee----eeec------------ccccce
Confidence 111122222222333457889999999999 99999999999999999886532 2333 445789
Q ss_pred EEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
.++..|||++.+++|+ |..|+||-++. |.+-+.+-+|.+. |+++.|-|+..++.+++.|+.|+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdF-GDCHKS~fAHdDS---------------vm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFAHDDS---------------VMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEecccc-chhhhhhhcccCc---------------eeEEEEcccceeEEEecCcceEE
Confidence 9999999999999986 69999999997 9999999999887 56999999999999999999999
Q ss_pred EEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 424 vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
-||-..-+. ++.+.+|...|++++.+|+|..+..++-+.+.+-+
T Consensus 618 qWDg~kFe~-iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 618 QWDGEKFEE-IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred eechhhhhh-heeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 999988777 79999999999999999999998888877765544
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=3e-30 Score=209.11 Aligned_cols=292 Identities=14% Similarity=0.178 Sum_probs=228.4
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|..+++.+.++.+|.+|.+++.|.++.+|-..+++. +.++.||+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------------lGty~GHt---------- 52 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------------LGTYDGHT---------- 52 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------------eeeecCCC----------
Confidence 457999999999999999999999999999999877663 57899999
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|.++...- +..++++|+.|.+++|||+.+|+.....+..... ..+.|+++|.
T Consensus 53 --GavW~~Did~--~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V----------------k~~~F~~~gn------ 106 (327)
T KOG0643|consen 53 --GAVWCCDIDW--DSKHLITGSADQTAKLWDVETGKQLATWKTNSPV----------------KRVDFSFGGN------ 106 (327)
T ss_pred --ceEEEEEecC--CcceeeeccccceeEEEEcCCCcEEEEeecCCee----------------EEEeeccCCc------
Confidence 9999999874 5569999999999999999999987766655321 1678888888
Q ss_pred ccCCCCccccC-----CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC
Q 011257 191 GCASNDSSFPP-----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 191 ~~~~~~~l~~~-----~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
+++.. +..+.|.++|+...........+...+ ..+...++.+-|.|-++.+++| +||.|..||++++
T Consensus 107 ------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 107 ------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred ------EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 33322 345688999843333233333434444 5666889999999999999999 9999999999976
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
.+... .-..|...|+.++++|+. .+|++++.|.+-++||.++-+. ++++... .+|
T Consensus 180 ~~~v~-------s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v----~Kty~te-------------~Pv 234 (327)
T KOG0643|consen 180 KELVD-------SDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEV----LKTYTTE-------------RPV 234 (327)
T ss_pred ceeee-------chhhhccccccccccCCc-ceEEecccCccceeeeccceee----EEEeeec-------------ccc
Confidence 66654 346688999999999999 9999999999999999998764 4666654 589
Q ss_pred EEEEECCCCCEEEEEc--C-CeEE------------EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 345 SDIKFARNGRHILSRD--Y-MTLK------------LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~--d-~~i~------------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
++.+++|-..+++.|. + ..|. +|++-. .+.+..+++|-+. |.+++|+|+
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGP---------------INsvAfhPd 298 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGP---------------INSVAFHPD 298 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccC---------------cceeEECCC
Confidence 9999999777777642 2 2222 222222 3445666777766 459999999
Q ss_pred CCEEEEeecCCeEEEEecCC
Q 011257 410 GGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~ 429 (490)
|+..++|++||.||+.-.+.
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999987664
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.8e-30 Score=235.25 Aligned_cols=291 Identities=12% Similarity=0.181 Sum_probs=231.5
Q ss_pred cccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 29 ~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
.+..+|...|.+++||.|...+++|+ .+.++||+..+.+++ .++..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kci-----------------------RTi~~---------- 412 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCI-----------------------RTITC---------- 412 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCccee-----------------------EEecc----------
Confidence 34568999999999999998888876 559999999987754 22322
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
+-+.+..|.| .+.++++|...|.+.++|+....+......+ .|.+. +++.+||++
T Consensus 413 ----~y~l~~~Fvp--gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH--------dgaIW-------si~~~pD~~---- 467 (888)
T KOG0306|consen 413 ----GYILASKFVP--GDRYIVLGTKNGELQVFDLASASLVETIRAH--------DGAIW-------SISLSPDNK---- 467 (888)
T ss_pred ----ccEEEEEecC--CCceEEEeccCCceEEEEeehhhhhhhhhcc--------cccee-------eeeecCCCC----
Confidence 3488899997 5579999999999999999887654443322 33444 778899999
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeee------ccccccceeEEEecCCCCEEEEe-cCCcEEEEEc
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSDGETFISA-DDLRINLWNL 261 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~ 261 (490)
.+++|+.|.+|++||.....+ ..+...+.+ .-.-+..|.|+++|||+++|+.+ -|.++++|-+
T Consensus 468 --------g~vT~saDktVkfWdf~l~~~--~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 468 --------GFVTGSADKTVKFWDFKLVVS--VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred --------ceEEecCCcEEEEEeEEEEec--cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 799999999999999422222 111111101 01234789999999999999999 8999999998
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
.+-.-.. .+.||.-+|.|+..+||+ .+++||+.|..|++|-+.-|. | -+.+-. |.
T Consensus 538 DtlKFfl--------sLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD-C---HKS~fA------------Hd 592 (888)
T KOG0306|consen 538 DTLKFFL--------SLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD-C---HKSFFA------------HD 592 (888)
T ss_pred cceeeee--------eecccccceeEEeccCCc-CeEEeccCCCceEEeccccch-h---hhhhhc------------cc
Confidence 8443332 578999999999999999 999999999999999998876 3 234444 44
Q ss_pred cceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
..|+++.|-|+...+.++ -|+.|+-||-.+ -+.++.+.+|... |++++.+|+|.++++++.|.
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~e---------------v~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSE---------------VWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhh-hhhheeeccchhe---------------eeeeEEcCCCCeEEeccCCc
Confidence 899999999988888876 579999999997 8899999999876 67999999999999999999
Q ss_pred eEEEEecCC
Q 011257 421 LFRVFGCSE 429 (490)
Q Consensus 421 ~i~vw~~~~ 429 (490)
+||+|.-..
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999999764
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-29 Score=205.80 Aligned_cols=276 Identities=19% Similarity=0.259 Sum_probs=213.4
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
-.+.|.++.|+++|.+|++++.|..++|||..++.+ ..++..+. -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence 367899999999999999999999999999988763 34455554 4
Q ss_pred ceeEEEEeecCCCcEEEEEeC--cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.|..++|.. ....++.++. |.+||.-++.+.+..+.
T Consensus 58 G~~~~~Fth--~~~~~i~sStk~d~tIryLsl~dNkylRY---------------------------------------- 95 (311)
T KOG1446|consen 58 GVDLACFTH--HSNTVIHSSTKEDDTIRYLSLHDNKYLRY---------------------------------------- 95 (311)
T ss_pred cccEEEEec--CCceEEEccCCCCCceEEEEeecCceEEE----------------------------------------
Confidence 577888874 2335555554 78898888887764331
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
+.||...|.+++.+|-+..++++ .|++|++||++..+ +...
T Consensus 96 -------------------------------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~ 137 (311)
T KOG1446|consen 96 -------------------------------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGL 137 (311)
T ss_pred -------------------------------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceE
Confidence 37999999999999999999999 89999999999444 3322
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
+ +...-..++|.|.| -+||++.....|++||++.-.. .|..++.... +-....+.+.||
T Consensus 138 l---------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~---------~~~~ew~~l~FS 196 (311)
T KOG1446|consen 138 L---------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITD---------NDEAEWTDLEFS 196 (311)
T ss_pred E---------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCC---------CCccceeeeEEc
Confidence 2 12223468999999 8999998888999999997531 2233333221 112568999999
Q ss_pred CCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 351 p~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|||++|+.+++ +.+.+.|.-. |..+.++..+...... . .+.+|+||++++++|+.||+|.+|++++
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~----------~--~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNL----------P--LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCc----------c--eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 99999998865 8999999987 8888888887654210 0 2789999999999999999999999999
Q ss_pred CceeeeEecc-CCCceEEEEEccCCCCCCCC
Q 011257 430 GSAESTTLEA-SKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 430 ~~~~~~~~~~-~~~~v~~~~~sp~~~~~~~~ 459 (490)
|.. ...+.+ +..++.++.|.|...+.+.+
T Consensus 264 g~~-v~~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 264 GKK-VAVLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred CcE-eeEecCCCCCCccccccCCceeeeeec
Confidence 988 466666 78999999999987766544
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=216.08 Aligned_cols=283 Identities=14% Similarity=0.256 Sum_probs=224.8
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+.+.-+-|..|||||+||++|+.||.|.+||..+++...-+ .|+-...|.-+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL---------------kYQAqd~fMMmd------------ 263 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL---------------KYQAQDNFMMMD------------ 263 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh---------------hhhhhcceeecc------------
Confidence 45678899999999999999999999999999988732100 011111233333
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
++|.|+.|+- +.+.+++|+.||.|++|.+++|.+..
T Consensus 264 ~aVlci~FSR--DsEMlAsGsqDGkIKvWri~tG~ClR------------------------------------------ 299 (508)
T KOG0275|consen 264 DAVLCISFSR--DSEMLASGSQDGKIKVWRIETGQCLR------------------------------------------ 299 (508)
T ss_pred cceEEEeecc--cHHHhhccCcCCcEEEEEEecchHHH------------------------------------------
Confidence 8899999984 66799999999999999998876322
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
.+..+|+..|.++.|+.|+..++++ .|.++++.-+..+ +++.
T Consensus 300 ----------------------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LK-- 342 (508)
T KOG0275|consen 300 ----------------------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLK-- 342 (508)
T ss_pred ----------------------------------HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHH--
Confidence 2236888999999999999999998 8999999999844 4443
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
++.+|...|+...|.++| ..+++++.||+|++|+..+.+. +.+|..... ..+|.++-.-|
T Consensus 343 -----EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~~----------d~~vnsv~~~P 402 (508)
T KOG0275|consen 343 -----EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLGT----------DYPVNSVILLP 402 (508)
T ss_pred -----HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCCC----------cccceeEEEcC
Confidence 679999999999999999 9999999999999999998763 345543221 15688887777
Q ss_pred -CCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 352 -NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 352 -~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
+-..++.+.. +++.|.++. ++.++.+........ +-.+++.||.|.++.+.++|+.++-|.+.+
T Consensus 403 Knpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 403 KNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred CCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 4566777754 899999997 888888765433211 123789999999999999999999999999
Q ss_pred CceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 430 GSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
|+. ..++..|...+..++-+|..+..+.
T Consensus 469 G~L-E~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 469 GKL-ERTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred Cce-eeeeecccccccccccCcccchhhh
Confidence 988 5899999999999999998886653
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.4e-31 Score=221.42 Aligned_cols=295 Identities=17% Similarity=0.233 Sum_probs=217.1
Q ss_pred cccccccccccccccccccEEEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccc
Q 011257 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (490)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~V~~~~~s~dg-~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 97 (490)
+..+|..+..+..-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+ ...+.
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence 44567777777778999999999999976 7899999999999999987664 46789
Q ss_pred cCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCce
Q 011257 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (490)
Q Consensus 98 ~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (490)
.|. +.|..|++.. ..+++++.|.+|+.|.++.... ...... +.+. .+
T Consensus 107 AH~------------G~V~Gi~v~~----~~~~tvgdDKtvK~wk~~~~p~-~tilg~---------s~~~-------gI 153 (433)
T KOG0268|consen 107 AHE------------GLVRGICVTQ----TSFFTVGDDKTVKQWKIDGPPL-HTILGK---------SVYL-------GI 153 (433)
T ss_pred ccc------------CceeeEEecc----cceEEecCCcceeeeeccCCcc-eeeecc---------cccc-------cc
Confidence 998 8899999962 5799999999999999887421 111111 0000 11
Q ss_pred EEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCc
Q 011257 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLR 255 (490)
Q Consensus 178 ~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~ 255 (490)
.-+.. .+.++++| ..|.|||. .... +.+.+ .--.+.|.++.|+|-. .+|++| +|+.
T Consensus 154 dh~~~------------~~~FaTcG--e~i~IWD~-~R~~------Pv~sm-swG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 154 DHHRK------------NSVFATCG--EQIDIWDE-QRDN------PVSSM-SWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccccc------------cccccccC--ceeeeccc-ccCC------cccee-ecCCCceeEEecCCCcchheeeeccCCc
Confidence 11111 11334433 36889992 2211 12222 1223668899999964 456666 8999
Q ss_pred EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccc
Q 011257 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (490)
Q Consensus 256 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (490)
|.+||+++......++ ....-+.++|+|.+ ..|++|+.|..++.||++.-. .++..
T Consensus 212 IvLyD~R~~~Pl~KVi---------~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~---~p~~v----------- 267 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI---------LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS---RPLNV----------- 267 (433)
T ss_pred eEEEecccCCccceee---------eeccccceecCccc-cceeeccccccceehhhhhhc---ccchh-----------
Confidence 9999999666554332 13445689999977 889999999999999998743 22344
Q ss_pred cccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 011257 336 FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (490)
Q Consensus 336 ~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 414 (490)
+.+|...|.++.|||.|+-+++|+ |.+|+||..+. + ...+.|+++.++.|+++.||.|.+|++
T Consensus 268 -~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~-~--------------~SRdiYhtkRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 268 -HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH-G--------------HSRDIYHTKRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred -hcccceeEEEeccCCCcchhccccccceEEEeecCC-C--------------cchhhhhHhhhheeeEEEEeccccEEE
Confidence 345568999999999999999997 59999999874 2 224567778888899999999999999
Q ss_pred EeecCCeEEEEecCCCc
Q 011257 415 TGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 415 s~~~dg~i~vw~~~~~~ 431 (490)
+||+|+.|++|.....+
T Consensus 332 SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKASE 348 (433)
T ss_pred ecCCCcceeeeecchhh
Confidence 99999999999987544
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.2e-30 Score=213.26 Aligned_cols=312 Identities=17% Similarity=0.256 Sum_probs=228.8
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|+.++.+.+|||||.++|||+.|..|+|.|++........+.- ..+...+.+| .+.++-.|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em--~~~~~qa~hP---vIRTlYDH~----------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEM--ISGDTQARHP---VIRTLYDHV----------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhh--ccCCcccCCc---eEeehhhcc-----------
Confidence 469999999999999999999999999999999833211000000 0000111112 345556666
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+.|+++.|+| ....|++++.|++|+++|+.....++.++
T Consensus 173 -devn~l~FHP--re~ILiS~srD~tvKlFDfsK~saKrA~K-------------------------------------- 211 (430)
T KOG0640|consen 173 -DEVNDLDFHP--RETILISGSRDNTVKLFDFSKTSAKRAFK-------------------------------------- 211 (430)
T ss_pred -Ccccceeecc--hhheEEeccCCCeEEEEecccHHHHHHHH--------------------------------------
Confidence 8899999998 34599999999999999987643222110
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
. .....+|.+++|+|.|.+|+.| +...+++||++ ..+++..
T Consensus 212 -----------------------------------~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~-T~Qcfvs 253 (430)
T KOG0640|consen 212 -----------------------------------V--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN-TYQCFVS 253 (430)
T ss_pred -----------------------------------H--hhccceeeeEeecCCCceEEEecCCCceeEEecc-ceeEeee
Confidence 0 0112578999999999999999 88999999999 4455432
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
. ..-.+|.+.|+++.+++.+ ++.++++.||.|++||--+++. +.++...... ..|.+..|.
T Consensus 254 a----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~g----------sevcSa~Ft 314 (430)
T KOG0640|consen 254 A----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHGG----------SEVCSAVFT 314 (430)
T ss_pred c----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcCC----------ceeeeEEEc
Confidence 2 1346799999999999999 9999999999999999887764 3455432211 579999999
Q ss_pred CCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEEEEecC
Q 011257 351 RNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCS 428 (490)
Q Consensus 351 p~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~ 428 (490)
.+|+|++++ -|..+++|.+.+ ++++..+.+...... . +. -+...|.....|++.-.+ .+.+.-||.+
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgr--q-----~~---rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGR--Q-----KH---RTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred cCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccc--h-----hh---hhhhhhcCccceEEccccccCceeecccc
Confidence 999999985 579999999998 999998887632110 0 00 024557777777765553 5789999999
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc-eecC
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV-VRRG 468 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~-~~~~ 468 (490)
++..+...-.+|.++++.+.-||.++.....+.+.- +.|.
T Consensus 384 tadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 384 TADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred chhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 987654555799999999999999998888877654 4444
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.7e-29 Score=225.11 Aligned_cols=271 Identities=23% Similarity=0.380 Sum_probs=213.3
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
++|++++|+| ++.++++++.||.|++|++.+++.......+.. .+ ..+.|+|+++
T Consensus 10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~--------~i-------~~~~~~~~~~-------- 64 (289)
T cd00200 10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--------PV-------RDVAASADGT-------- 64 (289)
T ss_pred CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc--------ce-------eEEEECCCCC--------
Confidence 8899999997 467999999999999999998764443332211 11 2678888887
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++++.++.+++|++ ... +....+ ..|...+.++.|++++++++++ .++.+.+||++.... ..
T Consensus 65 ----~l~~~~~~~~i~i~~~-~~~------~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-- 129 (289)
T cd00200 65 ----YLASGSSDKTIRLWDL-ETG------ECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LT-- 129 (289)
T ss_pred ----EEEEEcCCCeEEEEEc-Ccc------cceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EE--
Confidence 7899999999999993 221 122222 5777789999999999999988 599999999984433 22
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+..|...+.+++|+|++ .++++++.|+.|++||+++++. ...+..+ ...+.+++|+|
T Consensus 130 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~------------~~~i~~~~~~~ 187 (289)
T cd00200 130 -----TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKC----VATLTGH------------TGEVNSVAFSP 187 (289)
T ss_pred -----EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEcccccc----ceeEecC------------ccccceEEECC
Confidence 245688899999999997 8888888899999999987654 2444443 36899999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+++.+++++ ++.|++||++. ++.+..+..|... +.+++|+|++.++++++.||.|++|++.++
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 998888874 79999999986 7777777666543 458999999999998888999999999987
Q ss_pred ceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
+. ...+..|...+.+++|+|+++....++.+
T Consensus 252 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 252 EC-VQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred ee-EEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 76 57788999999999999998766655443
No 57
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.4e-29 Score=235.19 Aligned_cols=304 Identities=15% Similarity=0.189 Sum_probs=212.7
Q ss_pred ccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccc
Q 011257 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 97 (490)
+|-.+||+....+ .|-..|.....++|+..+++++.+..+..|+...+..+ -.+...+.. + .....+.
T Consensus 5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~~----~--~~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGKL----A--SNPPILL 72 (493)
T ss_pred cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eeccccccC----C--CCCceEe
Confidence 4566777665533 35677888888888777888888888888986554311 000000000 0 0012367
Q ss_pred cCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCce
Q 011257 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (490)
Q Consensus 98 ~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (490)
+|. +.|++++|+|. ++.+|++++.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 787 88999999982 4569999999999999998764321100
Q ss_pred EEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCc
Q 011257 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLR 255 (490)
Q Consensus 178 ~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~ 255 (490)
..+... +.+|...|.+++|+|++ ++|+++ .|+.
T Consensus 115 --------------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 115 --------------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred --------------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 001111 36888999999999985 688888 8999
Q ss_pred EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccc
Q 011257 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (490)
Q Consensus 256 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (490)
|++||+++.. ... .+.+|...|.+++|+|++ .+|++++.|++|++||+++++. +..+..|..
T Consensus 150 VrIWDl~tg~-~~~-------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~----- 211 (493)
T PTZ00421 150 VNVWDVERGK-AVE-------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTI----VSSVEAHAS----- 211 (493)
T ss_pred EEEEECCCCe-EEE-------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcE----EEEEecCCC-----
Confidence 9999998543 332 356789999999999999 9999999999999999998764 345555431
Q ss_pred cccccccceEEEEECCCCCEEEE-E----cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 336 FFTEIIASISDIKFARNGRHILS-R----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 336 ~~~~h~~~i~~l~~sp~g~~l~s-g----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
..+..+.|.+++..+++ | .|+.|++||+++...++.....+.... +....|++++
T Consensus 212 ------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~--------------~~~~~~d~d~ 271 (493)
T PTZ00421 212 ------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA--------------LFIPFFDEDT 271 (493)
T ss_pred ------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc--------------eEEEEEcCCC
Confidence 22456788998877776 3 258999999986444554443332211 2356799999
Q ss_pred CEEEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 411 GRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 411 ~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
++|++++ .|+.|++||+.+++.....-..+..+++.++|.|...
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc
Confidence 9999887 5999999999998763332233567888999998543
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-30 Score=206.45 Aligned_cols=244 Identities=16% Similarity=0.270 Sum_probs=186.2
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
++.+..|+|++.. .+.+++++.||+++|||+... ...+...+.+ ...++ ++.|++-.+.
T Consensus 60 ~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH------~~EV~-------Svdwn~~~r~------ 118 (311)
T KOG0277|consen 60 EDGLFDVAWSENH-ENQVIAASGDGSLRLFDLTMP-SKPIHKFKEH------KREVY-------SVDWNTVRRR------ 118 (311)
T ss_pred ccceeEeeecCCC-cceEEEEecCceEEEeccCCC-CcchhHHHhh------hhheE-------Eeccccccce------
Confidence 3779999999855 468899999999999995432 1222222211 11222 4555554442
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.+++++.|++||+|+ ......++++ .+|...|...+|+|. .+.++++ .|+.+++||++..++...
T Consensus 119 -----~~ltsSWD~TiKLW~-------~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 119 -----IFLTSSWDGTIKLWD-------PNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred -----eEEeeccCCceEeec-------CCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 677889999999999 2223344555 899999999999995 6778888 899999999997766543
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+..|...+.++.|+.-..++++||+.|+.||.||++.-+ .++..+.+ |.-.|+.++|
T Consensus 186 --------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~g------------h~~AVRkvk~ 242 (311)
T KOG0277|consen 186 --------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNG------------HGLAVRKVKF 242 (311)
T ss_pred --------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecC------------CceEEEEEec
Confidence 467889999999998777999999999999999999854 23444444 4589999999
Q ss_pred CCCC-CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCEEEEeecCCeEEEEe
Q 011257 350 ARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 350 sp~g-~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~ 426 (490)
||.. ..|++++ |-+++|||...+...+.+...|.+. |..+.||+ ++.++|+.+.|+.++||+
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF---------------v~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF---------------VCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceE---------------EeccccccccCceeeecccccceeeec
Confidence 9954 5667776 5999999998766777888888876 44788888 677999999999999998
Q ss_pred c
Q 011257 427 C 427 (490)
Q Consensus 427 ~ 427 (490)
.
T Consensus 308 p 308 (311)
T KOG0277|consen 308 P 308 (311)
T ss_pred c
Confidence 4
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6e-29 Score=236.70 Aligned_cols=248 Identities=18% Similarity=0.341 Sum_probs=204.1
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|...|++++|+||++++++|+.|++|+|||+.... +.+.++.+|.
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~----------------------~~~~~l~gH~---------- 246 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG----------------------RNLKTLKGHS---------- 246 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC----------------------eEEEEecCCC----------
Confidence 36899999999999999999999999999999994332 2467889999
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+| .++++++|+.|++|++||+.++++...
T Consensus 247 --~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~--------------------------------------- 283 (456)
T KOG0266|consen 247 --TYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRK--------------------------------------- 283 (456)
T ss_pred --CceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEe---------------------------------------
Confidence 8899999997 457999999999999999999765442
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc-ee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SF 268 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~-~~ 268 (490)
+.+|...|.+++|++++..|+++ .|+.|++||+.+... +.
T Consensus 284 --------------------------------------l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~ 325 (456)
T KOG0266|consen 284 --------------------------------------LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCL 325 (456)
T ss_pred --------------------------------------eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeee
Confidence 26788899999999999999999 899999999995542 12
Q ss_pred eeeecCCCccCCCCC--ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 269 NIVDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
. .+.++.. +++++.|+|++ .++++++.|+.+++||++.+.. ...+.+|... ...+.+
T Consensus 326 ~-------~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~---------~~~~~~ 384 (456)
T KOG0266|consen 326 K-------LLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNL---------VRCIFS 384 (456)
T ss_pred e-------cccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcc----eeeecccCCc---------ceeEec
Confidence 2 2333333 59999999999 9999999999999999998764 3566665421 013445
Q ss_pred EEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeee-ccccccccccccCCCccceeeEEEcCCCCEEEEee--cCCeE
Q 011257 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLF 422 (490)
Q Consensus 347 l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i 422 (490)
...++.++++++|+ |+.|++||+.+ +..+..+.+| ... +..++++|..+++++++ .|+.+
T Consensus 385 ~~~~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~---------------~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 385 PTLSTGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAA---------------VSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred ccccCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCc---------------eeccccCCCcCeeeecCcCCCceE
Confidence 55678999999985 69999999997 8888999998 443 45899999999999998 68999
Q ss_pred EEEecC
Q 011257 423 RVFGCS 428 (490)
Q Consensus 423 ~vw~~~ 428 (490)
++|..+
T Consensus 449 ~~w~~~ 454 (456)
T KOG0266|consen 449 RLWKYD 454 (456)
T ss_pred EEecCC
Confidence 999865
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=224.63 Aligned_cols=282 Identities=16% Similarity=0.245 Sum_probs=219.4
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccC-CeEEEEeeeccCCCcCCCCCCcccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGS 170 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
....+.||+ ..|+++.|.|. .+.+|++++.|+.|+||++.. +++.+.+..+.. .+
T Consensus 206 ~~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k--------~V--- 261 (503)
T KOG0282|consen 206 LSHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK--------PV--- 261 (503)
T ss_pred heeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchh--------hh---
Confidence 345678888 89999999983 478999999999999999987 555554444421 11
Q ss_pred ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEE
Q 011257 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFI 249 (490)
Q Consensus 171 ~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~ 249 (490)
..++|+.+|. .+++++.|+.+++|| ...+++...+.. ...+.++.|+|++ +.|+
T Consensus 262 ----rd~~~s~~g~------------~fLS~sfD~~lKlwD-------tETG~~~~~f~~--~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 262 ----RDASFNNCGT------------SFLSASFDRFLKLWD-------TETGQVLSRFHL--DKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred ----hhhhccccCC------------eeeeeecceeeeeec-------cccceEEEEEec--CCCceeeecCCCCCcEEE
Confidence 2788999999 799999999999999 233444444322 2456799999998 7788
Q ss_pred Ee-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccc
Q 011257 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
+| .|+.|+.||+++++ ..+ ++..|.+.|..+.|-+++ +.|++.+.|+.++||+.+.+-.. +.....
T Consensus 317 ~G~sd~ki~~wDiRs~k-vvq-------eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~i----k~i~~~ 383 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGK-VVQ-------EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPI----KNIADP 383 (503)
T ss_pred EecCCCcEEEEeccchH-HHH-------HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccc----hhhcch
Confidence 88 89999999999554 433 467789999999999999 99999999999999999886432 211111
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCC--CCceeeeeeeccccccccccccCCCccceeeEE
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
. .....++..+|++.++++-+ |+.|.++.+... ......+.+|..... -..+.
T Consensus 384 ~-----------~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~ 439 (503)
T KOG0282|consen 384 E-----------MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVD 439 (503)
T ss_pred h-----------hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc-------------eeeEE
Confidence 1 13467899999999999854 699999987631 233456677764321 12789
Q ss_pred EcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 406 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
|||||++|++|..||.+.+||.++-+. +..+++|..++..+.|+|..+....+.
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKL-VSKLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhh-hhccccCCcceEEEEecCCCcceeEec
Confidence 999999999999999999999998877 789999999999999999988766554
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-29 Score=213.01 Aligned_cols=277 Identities=17% Similarity=0.227 Sum_probs=214.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+.|.-+.|++ +|.+||+++.|.+..+|++.... .+-..+...+. ....-+.||||.+
T Consensus 225 dEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~-------------~~V~yi~wSPDdr------- 282 (519)
T KOG0293|consen 225 DEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS-------------QPVSYIMWSPDDR------- 282 (519)
T ss_pred CcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeeccc-------------CceEEEEECCCCC-------
Confidence 7799999995 88999999999999999886542 22222222111 1112688999999
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
++++++.+..+.+||+.+ +.++..+..++...+.+.+|.|||..+++| .|+.+..||+. +.....
T Consensus 283 -----yLlaCg~~e~~~lwDv~t-------gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~- 348 (519)
T KOG0293|consen 283 -----YLLACGFDEVLSLWDVDT-------GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGN- 348 (519)
T ss_pred -----eEEecCchHheeeccCCc-------chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhc-
Confidence 899999999999999322 333444445667889999999999999999 89999999998 332211
Q ss_pred eecCCCccCC-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 271 VDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 271 ~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.++ ....|.+++.++|| ..+++.+.|..|++|+..+.... .....+ .+|++++.
T Consensus 349 -------W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise~-------------~~its~~i 403 (519)
T KOG0293|consen 349 -------WEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISEE-------------QPITSFSI 403 (519)
T ss_pred -------ccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----cccccc-------------CceeEEEE
Confidence 122 23568999999999 88888899999999998765321 122222 57999999
Q ss_pred CCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCEEEEeecCCeEEEEec
Q 011257 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 350 sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~~ 427 (490)
|.|++++++. .+..+++||+.. .+.+..+.+|..... +..-||.. +..++++|++|+.|+||+.
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecch-hhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEc
Confidence 9999999886 679999999994 888899998876422 22445655 5589999999999999999
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
.+|+. +.++.+|...|++++|+|..+....++.+++-
T Consensus 470 ~sgkl-l~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 470 ISGKL-LAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred cCCce-eEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 99988 79999999999999999999877777766653
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5e-28 Score=247.89 Aligned_cols=279 Identities=18% Similarity=0.197 Sum_probs=199.3
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.+++|+| ++.++++|+.|+.|+||++........ ..+.... ..........++|++....
T Consensus 484 ~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~-------~~~~~~~v~~l~~~~~~~~------- 546 (793)
T PLN00181 484 NLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGR-DIHYPVV-------ELASRSKLSGICWNSYIKS------- 546 (793)
T ss_pred CcEEEEEECC--CCCEEEEEeCCCEEEEEECCccccccc-ccccceE-------EecccCceeeEEeccCCCC-------
Confidence 8899999997 677999999999999999764210000 0000000 0000011226677765332
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
++++++.|++|++||+ .. ......+ .+|...|.+++|+| ++.+|++| .|+.|++||+++.. ....
T Consensus 547 ----~las~~~Dg~v~lWd~-~~------~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~ 613 (793)
T PLN00181 547 ----QVASSNFEGVVQVWDV-AR------SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGT 613 (793)
T ss_pred ----EEEEEeCCCeEEEEEC-CC------CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEE
Confidence 7899999999999993 21 2233333 78999999999997 78899999 89999999998543 3332
Q ss_pred eecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 271 VDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+. +...+.++.|++ ++ .+|++|+.||.|++||++..+.. +..+.+ |...|.++.|
T Consensus 614 -------~~-~~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~---~~~~~~------------h~~~V~~v~f 669 (793)
T PLN00181 614 -------IK-TKANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLP---LCTMIG------------HSKTVSYVRF 669 (793)
T ss_pred -------Ee-cCCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCcc---ceEecC------------CCCCEEEEEE
Confidence 22 235789999965 56 89999999999999999875421 233333 4478999999
Q ss_pred CCCCCEEEEE-cCCeEEEEeccCC-----CCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 350 ARNGRHILSR-DYMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 350 sp~g~~l~sg-~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
. ++.+|+++ .|++|++||+... ..++..+.+|... +..++|+|++++|++|+.||.|+
T Consensus 670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---------------i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---------------KNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC---------------eeEEEEcCCCCEEEEEeCCCEEE
Confidence 7 67788886 5799999999741 2567777777654 34899999999999999999999
Q ss_pred EEecCCCceee------------eEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 424 VFGCSEGSAES------------TTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 424 vw~~~~~~~~~------------~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+|+...+.... .....+...|.+++|+|++.....++.
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred EEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 99987553211 012345567999999999987665544
No 63
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=203.54 Aligned_cols=263 Identities=16% Similarity=0.232 Sum_probs=209.2
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
+.+.|+..+. +......-.|+++|..+.|.+|++.+++++.|.+|+.||+++++++
T Consensus 70 ~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~---------------------- 125 (338)
T KOG0265|consen 70 AIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI---------------------- 125 (338)
T ss_pred eEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceee----------------------
Confidence 4567886553 2223334589999999999999999999999999999999999853
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCC-cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
..+++|. .-|+++. |..-| .++.+++.||+++|||++.....+.+.
T Consensus 126 -rk~k~h~------------~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------ 172 (338)
T KOG0265|consen 126 -RKHKGHT------------SFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------ 172 (338)
T ss_pred -ehhcccc------------ceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc------------------
Confidence 6678888 7788887 32333 456678999999999998866433211
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
....++++.|..++..+.+|
T Consensus 173 ------------------------------------------------------------~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 173 ------------------------------------------------------------NKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ------------------------------------------------------------cceeEEEEEecccccceeec
Confidence 11456889999999999998
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
-|+.|++||++...... .+.+|...|+.+..+|+| ..+.+-+.|.++++||++....-.+.+..+.++..
T Consensus 193 gIdn~ikvWd~r~~d~~~--------~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h 263 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLY--------TLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH 263 (338)
T ss_pred cccCceeeeccccCcceE--------EeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchh
Confidence 79999999998544433 468999999999999999 99999999999999999875443333566666542
Q ss_pred CCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
. .......++|+|++.++.+| .|..+++||... ...+..+.+|.+. |.++.|+|.
T Consensus 264 n--------feknlL~cswsp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gs---------------vn~~~Fhp~ 319 (338)
T KOG0265|consen 264 N--------FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGS---------------VNEVDFHPT 319 (338)
T ss_pred h--------hhhhcceeeccCCCCccccccccceEEEeeccc-ccEEEEcCCccee---------------EEEeeecCC
Confidence 1 11235668899999999998 479999999986 7899999999987 459999999
Q ss_pred CCEEEEeecCCeEEEE
Q 011257 410 GGRVATGSYSNLFRVF 425 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw 425 (490)
..+|.+++.|.+|++=
T Consensus 320 e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 320 EPIILSCSSDKTIYLG 335 (338)
T ss_pred CcEEEEeccCceeEee
Confidence 9999999999999863
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-28 Score=222.14 Aligned_cols=258 Identities=17% Similarity=0.326 Sum_probs=211.8
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (490)
.+.|+... ++.....++. .+.|+++.|+++|.+||+|..+|.|.|||....+.+
T Consensus 199 vylW~~~s--~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~----------------------- 252 (484)
T KOG0305|consen 199 VYLWSASS--GSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT----------------------- 252 (484)
T ss_pred EEEEecCC--CceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-----------------------
Confidence 45677666 2333333333 799999999999999999999999999999876643
Q ss_pred ccccc-CCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 94 TEFQS-HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 94 ~~~~~-h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
..+.+ |. ..|-+++|+ +..+.+|+.|+.|..+|++..+....
T Consensus 253 ~~~~~~h~------------~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~--------------------- 295 (484)
T KOG0305|consen 253 RTLRGSHA------------SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS--------------------- 295 (484)
T ss_pred ccccCCcC------------ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh---------------------
Confidence 44555 77 889999996 45889999999999999887541110
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (490)
.+.+|...|..+.|++|+++||+|
T Consensus 296 -------------------------------------------------------~~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 296 -------------------------------------------------------TLQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred -------------------------------------------------------hhhcccceeeeeEECCCCCeeccCC
Confidence 026888999999999999999999
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCccccccccceecccc
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
.|+.+.+||.......+ .+..|.+.|..++|+|-...+||+|+. |++|++||..++..+ ......
T Consensus 321 nDN~~~Iwd~~~~~p~~--------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdtg- 387 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKF--------TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDTG- 387 (484)
T ss_pred CccceEeccCCCccccE--------EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----cccccC-
Confidence 89999999996555444 457899999999999987789998865 999999999988753 333332
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEE---cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
..|..|.|++..+-|+++ +++.|.||++.+ .+++..+.+|... |..+++
T Consensus 388 ------------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~ 439 (484)
T KOG0305|consen 388 ------------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLAL 439 (484)
T ss_pred ------------CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEE
Confidence 579999999998888874 358999999997 8889999999876 679999
Q ss_pred cCCCCEEEEeecCCeEEEEecCCC
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+|||..+++|+.|.++++|++-..
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999864
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=213.89 Aligned_cols=270 Identities=15% Similarity=0.233 Sum_probs=208.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEE-EeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|.+++|+|....+..++++ -.+.||+..+..... +..+.. ...++.|-.||+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~----------------~v~s~~fR~DG~------- 81 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKD----------------VVYSVDFRSDGR------- 81 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhcc----------------ceeEEEeecCCe-------
Confidence 679999999966644444444 478999987754433 333331 112778899999
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE-EEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
++++|+..|.|+++| ... ...++. +.+|+.++..+.|+|+++. |++| +|+.+++||+.+... +
T Consensus 82 -----LlaaGD~sG~V~vfD-~k~------r~iLR~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~ 146 (487)
T KOG0310|consen 82 -----LLAAGDESGHVKVFD-MKS------RVILRQ-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--Q 146 (487)
T ss_pred -----EEEccCCcCcEEEec-ccc------HHHHHH-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--E
Confidence 899999999999999 222 112233 3899999999999997555 5556 789999999985542 2
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
. .+.+|++.|.+.+|+|..+.++++|+.||.|++||++.... .+..+. |..+|..+.+
T Consensus 147 ~------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~eln-------------hg~pVe~vl~ 204 (487)
T KOG0310|consen 147 A------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELN-------------HGCPVESVLA 204 (487)
T ss_pred E------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEec-------------CCCceeeEEE
Confidence 1 57899999999999998767999999999999999998531 123333 3378999999
Q ss_pred CCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 350 sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
-|.|..+++++...+++||+.+.++.+..+..|... |+|+++..++..|++|+-|+.|++||+.+
T Consensus 205 lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 205 LPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred cCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEEccc
Confidence 999999999988899999999756666666657665 67999999999999999999999999776
Q ss_pred CceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
-+. +..+.- .+||.+++.+|++.....|..
T Consensus 270 ~Kv-v~s~~~-~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 270 YKV-VHSWKY-PGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred eEE-EEeeec-ccceeeEEecCCCceEEEecc
Confidence 554 455554 579999999998876665544
No 66
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.6e-27 Score=195.47 Aligned_cols=282 Identities=17% Similarity=0.232 Sum_probs=216.0
Q ss_pred cccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 33 ~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
.-.+.|.+|+||| ...++++|+.||+||+|+++..... .-+....|.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---------------------~~ka~~~~~----------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---------------------VPKAQQSHD----------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc---------------------cchhhhccC-----------
Confidence 3468899999999 5567779999999999999874211 013355666
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
++|.+++|+ .+|..+++|+.|+.+++||+.+++..++
T Consensus 73 -~PvL~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~Q~~~v---------------------------------------- 109 (347)
T KOG0647|consen 73 -GPVLDVCWS--DDGSKVFSGGCDKQAKLWDLASGQVSQV---------------------------------------- 109 (347)
T ss_pred -CCeEEEEEc--cCCceEEeeccCCceEEEEccCCCeeee----------------------------------------
Confidence 889999998 5788999999999999999999865442
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC--EEEEe-cCCcEEEEEcCCCCcee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
..|..+|..+.|-+... .|++| .|.+|+.||.+...+..
T Consensus 110 --------------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 110 --------------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred --------------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 45667888888876544 89999 89999999999665544
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
.+ ...+.+.++..-. .+++.+..++.|.+|+++.+... +.....+. .-.+++|+
T Consensus 152 t~---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te------~k~~~SpL--------k~Q~R~va 205 (347)
T KOG0647|consen 152 TL---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTE------FKRIESPL--------KWQTRCVA 205 (347)
T ss_pred ee---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcch------hhhhcCcc--------cceeeEEE
Confidence 32 2356666665543 57888999999999999876432 22222111 13589999
Q ss_pred ECCCCCEEEEEc-CCeEEEEeccCCC--CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 349 FARNGRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 349 ~sp~g~~l~sg~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
..+|....+.|+ .|.+.|..++. + +.-.+++.|..... . .+.++.|.+++|+|.-..|+|++.||++.+|
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~-~~~~~nFtFkCHR~~~~-~-----~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS-V-----NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred EEecCCceEeeeecceEEEEecCC-CCccCceeEEEeccCCC-C-----CCceEEecceEeecccceEEEecCCceEEEe
Confidence 888888778876 59999999885 4 44467777775322 1 1246678899999999999999999999999
Q ss_pred ecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
|-+.... +...+.|..+|++..|+.+|...+.+..
T Consensus 279 Dkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 279 DKDARTK-LKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cchhhhh-hhccCcCCCccceeEecCCCCEEEEEee
Confidence 9887665 6788889999999999999998877653
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.9e-28 Score=232.26 Aligned_cols=313 Identities=14% Similarity=0.200 Sum_probs=229.6
Q ss_pred ccccEEEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 34 EVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
+...|.+++.+|||..+|||+ .||.++||+.+.-.. ........ -.+.+.+...|.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~-----l~k~l~~m~~h~----------- 69 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNEN-----LPKHLCTMDDHD----------- 69 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcc-----cchhheeecccc-----------
Confidence 455799999999999999999 999999999763210 00000000 012345566677
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+.|+|++|+| ||.+||+|+.|+.|.+|........ . .|
T Consensus 70 -~sv~CVR~S~--dG~~lAsGSDD~~v~iW~~~~~~~~----------------~-----------~f------------ 107 (942)
T KOG0973|consen 70 -GSVNCVRFSP--DGSYLASGSDDRLVMIWERAEIGSG----------------T-----------VF------------ 107 (942)
T ss_pred -CceeEEEECC--CCCeEeeccCcceEEEeeecccCCc----------------c-----------cc------------
Confidence 8999999996 8889999999999999987641000 0 00
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
-+.+....+.-|. +...+ .+|...|..++|+|++.+|+++ -|++|.+|+..+. ....
T Consensus 108 -------gs~g~~~~vE~wk------------~~~~l-~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~- 165 (942)
T KOG0973|consen 108 -------GSTGGAKNVESWK------------VVSIL-RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLK- 165 (942)
T ss_pred -------cccccccccceee------------EEEEE-ecCCCccceeccCCCccEEEEecccceEEEEccccc-eeee-
Confidence 1111222233333 44444 7899999999999999999999 8999999999866 4444
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.+.+|...|..+.|.|-| ++||+-+.|++|++|++.+-... +.+..+..... -...+..+.||
T Consensus 166 ------vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~----k~It~pf~~~~------~~T~f~RlSWS 228 (942)
T KOG0973|consen 166 ------VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE----KSITKPFEESP------LTTFFLRLSWS 228 (942)
T ss_pred ------eeecccccccceEECCcc-CeeeeecCCceEEEEEcccceee----EeeccchhhCC------CcceeeecccC
Confidence 468999999999999999 99999999999999997664332 22322211100 11457899999
Q ss_pred CCCCEEEEEc-----CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC-----CC---------
Q 011257 351 RNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GG--------- 411 (490)
Q Consensus 351 p~g~~l~sg~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~~--------- 411 (490)
|||++|++.. -.++.|.+..+ -+.-..+.+|... +..+.|+|. .+
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p---------------~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAP---------------VEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCc---------------eEEEEeChHHhccccccCCccCCCc
Confidence 9999999852 26888988876 6667788888876 347777762 11
Q ss_pred ---EEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 412 ---RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 412 ---~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
.+|+|+.|++|.||.....++.+.....-..+|.++.|+|||-.....+.++..
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeE
Confidence 578999999999999987777555555567899999999999998888877654
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.6e-29 Score=212.28 Aligned_cols=252 Identities=14% Similarity=0.248 Sum_probs=198.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.|+.+ ++..+++|..|++|++||..+..+......+. |++. +..-+.+
T Consensus 198 kgVYClQY----DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHt--------GSVL---------CLqyd~r-------- 248 (499)
T KOG0281|consen 198 KGVYCLQY----DDEKIVSGLRDNTIKIWDKNSLECLKILTGHT--------GSVL---------CLQYDER-------- 248 (499)
T ss_pred CceEEEEe----cchhhhcccccCceEEeccccHHHHHhhhcCC--------CcEE---------eeeccce--------
Confidence 67999988 45689999999999999998876655544332 2222 2333344
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
.+++|+.|.+|++||+ ..+++++++ -+|...|..+.|+. .+++++ .|.++.+||+...... ...
T Consensus 249 ----viisGSSDsTvrvWDv-------~tge~l~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i-t~r 313 (499)
T KOG0281|consen 249 ----VIVSGSSDSTVRVWDV-------NTGEPLNTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI-TLR 313 (499)
T ss_pred ----EEEecCCCceEEEEec-------cCCchhhHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH-HHH
Confidence 7899999999999993 334555555 68889999999974 578888 8999999999855422 111
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
..+.+|...|..+.|+. +++++++.|.+|++|++.+.+. ++++.+|. ..|-|+.+.
T Consensus 314 ----rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~ef----vRtl~gHk------------RGIAClQYr- 369 (499)
T KOG0281|consen 314 ----RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEF----VRTLNGHK------------RGIACLQYR- 369 (499)
T ss_pred ----HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceee----ehhhhccc------------ccceehhcc-
Confidence 13689999999999975 6999999999999999999875 47776665 778888874
Q ss_pred CCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
|+++++| +|.+|++||+.. +.++..+++|...+ .++.| |.+.+++|+.||+|+|||+.++
T Consensus 370 -~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLv---------------RciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 370 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -CeEEEecCCCceEEEEeccc-cHHHHHHhchHHhh---------------hheee--cCceeeeccccceEEEEecccc
Confidence 8999998 579999999997 99999999999984 48888 6788999999999999999876
Q ss_pred cee--------eeEeccCCCceEEEEEcc
Q 011257 431 SAE--------STTLEASKNPMRRQVQTP 451 (490)
Q Consensus 431 ~~~--------~~~~~~~~~~v~~~~~sp 451 (490)
... +..+..|.+.|..+.|..
T Consensus 431 ldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 431 LDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred cCCcccccchHHHhhhhccceeEEEeecc
Confidence 532 345667788888777653
No 69
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.3e-26 Score=220.40 Aligned_cols=263 Identities=18% Similarity=0.250 Sum_probs=183.3
Q ss_pred ecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEE
Q 011257 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (490)
Q Consensus 53 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~ 132 (490)
|+.++.|++|+..... .+..+.+|. +.|.+++|+|. ++.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence 4566778888865432 245678898 88999999983 35699999
Q ss_pred eCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeee
Q 011257 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (490)
Q Consensus 133 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~ 212 (490)
+.|++|++||+.++..... ..
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~i---------------------------------------------------------- 114 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-EI---------------------------------------------------------- 114 (568)
T ss_pred eCCCeEEEEECCCCCcccc-cc----------------------------------------------------------
Confidence 9999999999976421000 00
Q ss_pred ecccccccccceeeeeccccccceeEEEecCCCCEE-EEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEE
Q 011257 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 290 (490)
..+... +.+|...|.+++|+|++..+ +++ .|+.|++||+++...... +. |...|.+++|
T Consensus 115 ---------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~Slsw 175 (568)
T PTZ00420 115 ---------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKW 175 (568)
T ss_pred ---------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEE
Confidence 000011 25788899999999998764 576 899999999986543322 22 4567999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cC----CeEE
Q 011257 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY----MTLK 365 (490)
Q Consensus 291 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d----~~i~ 365 (490)
+|+| .+|++++.|+.|+|||+++++. +..+.+|..... ...+....|++++.+|+++ .+ ++|+
T Consensus 176 spdG-~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~-------s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 176 NIKG-NLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKN-------TKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred CCCC-CEEEEEecCCEEEEEECCCCcE----EEEEecccCCce-------eEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 9999 8999999999999999998764 345555541100 0122334567898888874 34 4799
Q ss_pred EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceE
Q 011257 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (490)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 445 (490)
|||++....++..+..+..... ++.....++|.++++|+.|+.|++|++..+......-..+..+++
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~ 310 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFR 310 (568)
T ss_pred EEECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCcc
Confidence 9999964667766644432210 112333556889999999999999999877542222223568899
Q ss_pred EEEEccCCC
Q 011257 446 RQVQTPSRP 454 (490)
Q Consensus 446 ~~~~sp~~~ 454 (490)
+++|.|+..
T Consensus 311 g~~f~Pkr~ 319 (568)
T PTZ00420 311 SFGFLPKQI 319 (568)
T ss_pred ceEEccccc
Confidence 999999765
No 70
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.4e-27 Score=206.48 Aligned_cols=313 Identities=13% Similarity=0.168 Sum_probs=229.0
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-ccCCcccceeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLE 110 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~ 110 (490)
..|.-+|+|++++||.++.++++.+|+|.=|++.++....-..... .+... .+.....- .+|.
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~----~~~~~k~~r~~h~---------- 202 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKS----HGNPLKESRKGHV---------- 202 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhh----ccCCCCccccccc----------
Confidence 4689999999999999999999999999999999887431000000 00000 00011111 2454
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++.+| ++.+|++|+.|..|.||+.++.+....
T Consensus 203 --keil~~avS~--Dgkylatgg~d~~v~Iw~~~t~ehv~~--------------------------------------- 239 (479)
T KOG0299|consen 203 --KEILTLAVSS--DGKYLATGGRDRHVQIWDCDTLEHVKV--------------------------------------- 239 (479)
T ss_pred --ceeEEEEEcC--CCcEEEecCCCceEEEecCcccchhhc---------------------------------------
Confidence 7799999985 788999999999999999988753221
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+.+|.+.|.+++|-.....|+++ .|+.|++|++..... +.
T Consensus 240 --------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-ve 280 (479)
T KOG0299|consen 240 --------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VE 280 (479)
T ss_pred --------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HH
Confidence 26888999999999887778887 899999999984332 22
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
++.+|+..|.++....-+ +.+-+|+.|+++++|++..... ..|.++ .+.+-|++|
T Consensus 281 -------tlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesq-----lifrg~------------~~sidcv~~ 335 (479)
T KOG0299|consen 281 -------TLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQ-----LIFRGG------------EGSIDCVAF 335 (479)
T ss_pred -------HHhCCccceeeechhccc-ceEEeccccceeEEEeccccce-----eeeeCC------------CCCeeeEEE
Confidence 578999999999998887 7888888999999999955321 233333 378999999
Q ss_pred CCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
-. ..++++|+| |.|.+|++.+ .+++.+.....+..+.......+ +-|++++..|...++|+|+.+|.|++|.+.
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEEEec
Confidence 75 467788865 9999999997 88888877655544332111111 236799999999999999999999999999
Q ss_pred CCce---eeeEeccCCCceEEEEEccCCCCCCCCcc--CcceecCeeecc
Q 011257 429 EGSA---ESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRRGMFTHI 473 (490)
Q Consensus 429 ~~~~---~~~~~~~~~~~v~~~~~sp~~~~~~~~~~--~~~~~~~~~~~~ 473 (490)
.|-. .+..+. -.+.|++++|+++|.....+.. .+-++|++.-.+
T Consensus 411 ~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 411 DGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred CCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 8832 233333 4578999999999994443322 555677765433
No 71
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-28 Score=220.38 Aligned_cols=257 Identities=19% Similarity=0.269 Sum_probs=213.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
++|.+|.|+|... .++++-..|.|.|||.++..+...+...
T Consensus 14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV~------------------------------------- 54 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEVS------------------------------------- 54 (794)
T ss_pred CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeeec-------------------------------------
Confidence 8899999999655 8999999999999999987765533221
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
..+|++..|-+.-+++++| +|..|++|+..+..+..
T Consensus 55 ----------------------------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--- 91 (794)
T KOG0276|consen 55 ----------------------------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--- 91 (794)
T ss_pred ----------------------------------------ccchhhheeeeccceEEEecCCceEEEEecccceeeE---
Confidence 1466777788888999999 89999999999666543
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+..|...|++++.+|.. .++++++.|-+|++||-...=.+ ..+|++|. ..|++++|.|
T Consensus 92 -----~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~qtfeGH~------------HyVMqv~fnP 150 (794)
T KOG0276|consen 92 -----TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQTFEGHE------------HYVMQVAFNP 150 (794)
T ss_pred -----EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---eeEEcCcc------------eEEEEEEecC
Confidence 468999999999999999 89999999999999999875433 35555554 8999999999
Q ss_pred -CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC--CCEEEEeecCCeEEEEec
Q 011257 352 -NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 352 -~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~vw~~ 427 (490)
|...+|+++ |++|++|.+.. ..+..++++|...+ .++++-+. ..+|++|++|.+|+|||.
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred CCccceeeeeccccEEEEEcCC-CCCceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeec
Confidence 778888876 79999999997 88999999998774 48888774 469999999999999999
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecCeeeccccceeeeeeechhccc
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRGMFTHIQLLCIFIQALTKLTSI 489 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (490)
++..| ++++++|...|..+.|+|.-+....++-++..+.+....-+....++..|.+.|-|
T Consensus 215 Qtk~C-V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 215 QTKSC-VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred chHHH-HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 99999 69999999999999999999999988888776666555555555566666666655
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.9e-26 Score=179.86 Aligned_cols=307 Identities=19% Similarity=0.200 Sum_probs=221.4
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
++....|.+++|+|.|.+.|+|+...+.+|-....-.. +++.++... .|.......-+.|
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~---~r~~hea~~-----~pp~v~~kr~khh------------ 88 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID---LRHAHEAAK-----QPPSVLCKRNKHH------------ 88 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccC---ccccccccc-----CCCeEEeeecccc------------
Confidence 44567899999999999999999999998877643221 112111111 1111111222334
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.+.|.|.+|+| .|+++++|+.|.+|++..+........ |.
T Consensus 89 kgsiyc~~ws~--~geliatgsndk~ik~l~fn~dt~~~~-------------------------------g~------- 128 (350)
T KOG0641|consen 89 KGSIYCTAWSP--CGELIATGSNDKTIKVLPFNADTCNAT-------------------------------GH------- 128 (350)
T ss_pred CccEEEEEecC--ccCeEEecCCCceEEEEeccccccccc-------------------------------Cc-------
Confidence 48999999997 678999999999999876654332110 00
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC----CCEEEEe--cCCcEEEEEcCCCC
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEISN 265 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~--~d~~i~~wd~~~~~ 265 (490)
+. . +.-|.+.|+.++|..+ +.+|+++ .|..|++-|... +
T Consensus 129 -------------------------dl--------e-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~-g 173 (350)
T KOG0641|consen 129 -------------------------DL--------E-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR-G 173 (350)
T ss_pred -------------------------ce--------e-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-C
Confidence 00 0 2566788888888654 6678876 588888888774 4
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
+.++ .+.+|.+.|.++ ++-++ .+|++|+.|.+|++||++-+.. +.++....... .--...|.
T Consensus 174 ~~~~-------a~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~----v~~l~~~~~~~-----glessava 235 (350)
T KOG0641|consen 174 QGFH-------ALSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSC----VNTLDNDFHDG-----GLESSAVA 235 (350)
T ss_pred Ccce-------eecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeeccce----eeeccCcccCC-----CcccceeE
Confidence 4444 468899998877 45566 8999999999999999997643 23333211000 00125799
Q ss_pred EEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 346 ~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
+++..|.|++|++| .|....+||++- +++++.+..|... |.++.|||...|+++++.|..|++
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsad---------------ir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSAD---------------IRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccc---------------eeEEEeCCCceEEEEecccceEEE
Confidence 99999999999999 568999999995 9999999888766 459999999999999999999999
Q ss_pred EecCCC---ceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 425 FGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 425 w~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
=|++.. +..+.+...|++.+..+.|+|..-....++.++....
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 999843 3445677889999999999999887777776665433
No 73
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=209.26 Aligned_cols=276 Identities=18% Similarity=0.253 Sum_probs=218.7
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|..+.|-++...|++|+.|..|++|++...+. .+..++.|..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------~~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------ELISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------hhhhhhhccC----------
Confidence 346899999999999988999999999999999876552 1356677776
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|+++.|.+ ++.++++++.|+.+++|++...+....
T Consensus 220 --g~it~~d~d~--~~~~~iAas~d~~~r~Wnvd~~r~~~T--------------------------------------- 256 (459)
T KOG0288|consen 220 --GNITSIDFDS--DNKHVIAASNDKNLRLWNVDSLRLRHT--------------------------------------- 256 (459)
T ss_pred --CCcceeeecC--CCceEEeecCCCceeeeeccchhhhhh---------------------------------------
Confidence 8899999975 677999999999999999987653221
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+.+|+..|+++.|......+++| .|.+|++||+.. ..+.+
T Consensus 257 --------------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~k 297 (459)
T KOG0288|consen 257 --------------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSK 297 (459)
T ss_pred --------------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhh-hheec
Confidence 36788999999998877778888 899999999984 44443
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+ + ....+..|+.++ ..+++|..|++||+||+++... .+..+.+ +.|+++..
T Consensus 298 t~------l--~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~l 349 (459)
T KOG0288|consen 298 TV------L--PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDL 349 (459)
T ss_pred cc------c--ccccccceEecc---eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEee
Confidence 21 1 234455666663 6799999999999999998764 3455544 58999999
Q ss_pred CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
+++|..|.+++ |.++.+.|+++ .+....+...... +-.+++.+.|||++.|+++|+.||.|+||++.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 99999998864 69999999997 7777777654422 11224589999999999999999999999999
Q ss_pred CCceeeeEeccCCCc--eEEEEEccCCCCCCCCc
Q 011257 429 EGSAESTTLEASKNP--MRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~--v~~~~~sp~~~~~~~~~ 460 (490)
++++. ..+...... |++++|+|.|...+.++
T Consensus 418 tgKlE-~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 418 TGKLE-KVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred CceEE-EEeccCCCCcceEEEEEcCCCchhhccc
Confidence 99884 566555544 99999999998776554
No 74
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=215.24 Aligned_cols=398 Identities=15% Similarity=0.128 Sum_probs=253.3
Q ss_pred cccccEEEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccccc-CCcc---cce-
Q 011257 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPE---FDY- 105 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~---~~~- 105 (490)
.|..+++|++||++|+|+|+|- ..-.+++|++.....+..+ ..++-.+.+.+|+|..+++..... |..- ++.
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 4677999999999999999986 5668999999887654322 334556789999999988775432 2211 111
Q ss_pred ----eeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCC-----CcCCCCCCcccccc--c
Q 011257 106 ----LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHP-----EKAAGNGPIFGSHV--S 173 (490)
Q Consensus 106 ----~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~--~ 173 (490)
..+-.+...|..++|+ +++.++++++ ...|++|.++.++ .+....+.... ......-.+..... .
T Consensus 155 ~N~~~asnkiss~Vsav~fs--EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 155 VNSSGASNKISSVVSAVAFS--EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hcccccccccceeEEEEEEc--cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 1122466789999998 6888999887 5789999998765 11111111000 00000000000000 0
Q ss_pred cCceEEeccCCc-----------------cccccccCCCCccccCCCCCcEEEeeeeccccc-cc-------------cc
Q 011257 174 AIPKSYMANGGC-----------------GERNFGCASNDSSFPPGGVSSLRLPVVVTSQET-NL-------------VA 222 (490)
Q Consensus 174 ~~~~~~s~~g~~-----------------~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~-~~-------------~~ 222 (490)
....+....|.. ...+..+.+.++|+.|+.+|.|++++- ...+- .. ..
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp-~tL~y~~Tlpr~halg~d~a~~~ 310 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNP-ETLDYAGTLPRSHALGSDTANLS 310 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCc-chhhhccccccccccccchhhcc
Confidence 012233333221 111233467789999999999999972 11111 00 00
Q ss_pred ceeeeec---cccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCC----
Q 011257 223 GCRRIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---- 294 (490)
Q Consensus 223 ~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---- 294 (490)
+..+... .+.-....++.|++...+|.+. .|..+++||++...+.-+. ..+-.|...|+++.--|-+
T Consensus 311 q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~ 385 (1080)
T KOG1408|consen 311 QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSP 385 (1080)
T ss_pred cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCc
Confidence 0000100 0111223467799888888888 8999999999866544322 2345677777777655511
Q ss_pred ------CcEEEEEeCCCeEEEEeCCCcccc---ccccce--e-ccccCCCccc---------------cccccccceEEE
Q 011257 295 ------CNMLAYSSSKGSIRLIDMRQSALC---DTHSKL--F-EEQEAPGTRS---------------FFTEIIASISDI 347 (490)
Q Consensus 295 ------~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~--~-~~~~~~~~~~---------------~~~~h~~~i~~l 347 (490)
...|+|++.|++||+||+...... .+.+.. + .......... -.-+-...++++
T Consensus 386 ~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~ 465 (1080)
T KOG1408|consen 386 TAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRAL 465 (1080)
T ss_pred ccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEE
Confidence 136999999999999999863111 000000 0 0000000000 011123479999
Q ss_pred EECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC---CCCEEEEeecCCeEE
Q 011257 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFR 423 (490)
Q Consensus 348 ~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~dg~i~ 423 (490)
+.||+|++||+|+. |.++|||+.. .+.+..+..|... |.++.||- ..++||+++.|..|+
T Consensus 466 ~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesE---------------ilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 466 AVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESE---------------ILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred EECCCcceecccCccCceEEEEehh-hhhhhheecccce---------------eEEEeecCchhhhHhhhhccCCceEE
Confidence 99999999999987 9999999996 7888888888876 56888875 357899999999999
Q ss_pred EEecCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 424 vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
|||+...-.+++++.+|...|+++.|--.|.-+
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999998877789999999999999999887433
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=192.90 Aligned_cols=267 Identities=17% Similarity=0.243 Sum_probs=204.4
Q ss_pred eEEEEeecCCCcEEEEE-------eCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 116 NKIRWCQSANSALYLLS-------TNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~-------~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
.++.|+|--++ +|+++ ...|++.|.++... .+.....+... ..++ .++|+++...
T Consensus 12 ysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~-------D~Lf-------dV~Wse~~e~-- 74 (311)
T KOG0277|consen 12 YSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTE-------DGLF-------DVAWSENHEN-- 74 (311)
T ss_pred ceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecc-------ccee-------EeeecCCCcc--
Confidence 46888886654 44443 34688889888633 33333332221 1222 7788887764
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCC
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
.+++++.||++++|| .... ..+++.+ +.|...|.++.|++- +..++++ .|++|++|+.....
T Consensus 75 ---------~~~~a~GDGSLrl~d-~~~~-----s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 75 ---------QVIAASGDGSLRLFD-LTMP-----SKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred ---------eEEEEecCceEEEec-cCCC-----CcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 788999999999999 2221 2244444 789999999999985 5566777 79999999998443
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
.++ ++.+|...|...+|+|..+++|++++.|+++++||++..... ..++.|. ..|.
T Consensus 139 -Sv~-------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~----~~i~ah~------------~Eil 194 (311)
T KOG0277|consen 139 -SVQ-------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF----MSIEAHN------------SEIL 194 (311)
T ss_pred -ceE-------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce----eEEEecc------------ceeE
Confidence 333 578999999999999998899999999999999999875321 2355554 6899
Q ss_pred EEEECC-CCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC-CCEEEEeecCCeE
Q 011257 346 DIKFAR-NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLF 422 (490)
Q Consensus 346 ~l~~sp-~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i 422 (490)
++.|+. +...|++| .|+.|+.||+++-..++..+.+|.-. |..++|||- ..+||+++.|-++
T Consensus 195 ~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---------------VRkvk~Sph~~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---------------VRKVKFSPHHASLLASASYDMTV 259 (311)
T ss_pred eecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE---------------EEEEecCcchhhHhhhccccceE
Confidence 999998 56667776 57999999999878889999888876 559999995 4589999999999
Q ss_pred EEEecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
||||...+...+.+...|..-+..+.||+-.+
T Consensus 260 riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~ 291 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTEFVCGLDWSLFDP 291 (311)
T ss_pred EecccccchhhhhhhhccceEEeccccccccC
Confidence 99999977665778889999999999998743
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=218.87 Aligned_cols=281 Identities=14% Similarity=0.214 Sum_probs=220.2
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
|...+.|..|. +.++++++.+.+|++|+..++..+ ...+.||. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i----------------------~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI----------------------LTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE----------------------EeeccCCC------------C
Confidence 57788999999 458999999999999999877642 34489999 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|.++++.. .+..+++|+.|.++++||..++.+...+..+.. .+......
T Consensus 251 ~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s------------------tv~~~~~~---------- 300 (537)
T KOG0274|consen 251 GVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS------------------SVRCLTID---------- 300 (537)
T ss_pred CceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEEecCCCc------------------eEEEEEcc----------
Confidence 899999963 467999999999999999999999888775543 11111111
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+.++++|+.|.+|++|++ . ...++..+ .+|..+|.++..+ +.++++| .|+.|++||+. ..++..
T Consensus 301 -~~~~~sgs~D~tVkVW~v-~------n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~--- 365 (537)
T KOG0274|consen 301 -PFLLVSGSRDNTVKVWDV-T------NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLK--- 365 (537)
T ss_pred -CceEeeccCCceEEEEec-c------CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeee---
Confidence 126778899999999993 2 34555555 6699999999988 7789998 89999999999 555554
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
.+.+|...|.++.+.+. ..+++|+.|++|++||+++...+ +.++.+|. .-+..+.+ .
T Consensus 366 ----sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c---~~tl~~h~------------~~v~~l~~--~ 422 (537)
T KOG0274|consen 366 ----SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC---IHTLQGHT------------SLVSSLLL--R 422 (537)
T ss_pred ----eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh---hhhhcCCc------------cccccccc--c
Confidence 57889999999988875 58999999999999999987322 45665554 56655554 4
Q ss_pred CCEEEEEc-CCeEEEEeccCCCCceeeeeee-ccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 353 g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+++|++++ |++|++||... +++++++.++ ... |..+++. ...+++++.||.+++||++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--cceEEEEecCCeeEEEecccC
Confidence 78899874 79999999997 9999999884 332 3355554 467888999999999999999
Q ss_pred ceeeeEe
Q 011257 431 SAESTTL 437 (490)
Q Consensus 431 ~~~~~~~ 437 (490)
+.. +.+
T Consensus 485 ~~~-~~l 490 (537)
T KOG0274|consen 485 TLI-RTL 490 (537)
T ss_pred chh-hhh
Confidence 873 444
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.2e-26 Score=198.91 Aligned_cols=279 Identities=18% Similarity=0.273 Sum_probs=221.3
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
....++++...|..+.++||+.|..+.++|...++ .+..+.||. .
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------k 262 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------K 262 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------e
Confidence 35678899999887899999999999999988776 468899999 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|+.+.|+|.. ..+++++.|-.|++|.........
T Consensus 263 ki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~~------------------------------------------- 297 (506)
T KOG0289|consen 263 KITSVKFHKDL--DTVITASADEIIRVWSVPLSSEPT------------------------------------------- 297 (506)
T ss_pred EEEEEEeccch--hheeecCCcceEEeeccccccCcc-------------------------------------------
Confidence 89999999844 488999999999999875533111
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
....|..+|+.+..+|.|.+|+++ .|++..+.|++++.......
T Consensus 298 ----------------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs- 342 (506)
T KOG0289|consen 298 ----------------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS- 342 (506)
T ss_pred ----------------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-
Confidence 025777899999999999999999 89999999999655443321
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
-....-.+++.+|+||| .+|.+|..||.++|||+.+... +..|.+| .++|..++|+-+
T Consensus 343 -----~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~----~a~Fpgh------------t~~vk~i~FsEN 400 (506)
T KOG0289|consen 343 -----DETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTN----VAKFPGH------------TGPVKAISFSEN 400 (506)
T ss_pred -----eccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccc----cccCCCC------------CCceeEEEeccC
Confidence 11234568999999999 9999999999999999998753 3555555 489999999999
Q ss_pred CCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCc
Q 011257 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 353 g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
|-|||++ +|+.|++||++. .+.+.++...... +|.+++|.+.|.+|+.++.|=.|++++-.+..
T Consensus 401 GY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred ceEEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 9999997 458899999997 6667666654432 14599999999999999877666666644433
Q ss_pred -eeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 432 -AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 432 -~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
..+..+..|.+..+.+.|...-.....++.++.
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI 499 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhh
Confidence 224567778888999999988888777776655
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-26 Score=197.77 Aligned_cols=273 Identities=16% Similarity=0.244 Sum_probs=198.4
Q ss_pred cccccccEEEEEECCCC---CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 31 EVQEVDIISAIEFDKSG---DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg---~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
..+|.++|.+++|.-.. ..|++++.|.++++|.++.++.. .......+||.
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-------------------~~~~~~~~GHk------- 193 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-------------------VKALKVCRGHK------- 193 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-------------------hhHHhHhcccc-------
Confidence 45799999988886433 36999999999999999877632 01123345898
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..|.+|...+ ++.++++|+.|.+|.+|+............... +.++
T Consensus 194 -----~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~-----------------------rrk~--- 240 (423)
T KOG0313|consen 194 -----RSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNR-----------------------RRKK--- 240 (423)
T ss_pred -----cceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchh-----------------------hhhh---
Confidence 8899999874 678999999999999999443221111111000 0000
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
....+......+. ..+.+|..+|.++.|++ ...++++ .|.+|+.||+.+++.
T Consensus 241 -------------------------~~~~~~~~~r~P~-vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 241 -------------------------QKREKEGGTRTPL-VTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred -------------------------hhhhhcccccCce-EEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc
Confidence 0001111112222 23489999999999998 5566666 899999999997665
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
...+. ....+.++.++|.. ++|++|+.|..|++||.+++.-- -...+ +.+|.+.|.+
T Consensus 294 ~~~~~---------~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs-~v~~s------------~~gH~nwVss 350 (423)
T KOG0313|consen 294 KSTLT---------TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGS-VVSQS------------LIGHKNWVSS 350 (423)
T ss_pred eeeee---------cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCCc-eeEEe------------eecchhhhhh
Confidence 54321 35668999999988 99999999999999999987421 00122 5666799999
Q ss_pred EEECCCCCEE-EEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 347 IKFARNGRHI-LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 347 l~~sp~g~~l-~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
+.|+|...++ ++|+ |+++++||+++...++..+.+|.+. |+++.|. ++.+|++|+.|++|+|
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK---------------vl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK---------------VLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce---------------EEEEecc-CCceEEeccCcceEEE
Confidence 9999966655 4565 6999999999856699999999776 6799998 7789999999999999
Q ss_pred EecC
Q 011257 425 FGCS 428 (490)
Q Consensus 425 w~~~ 428 (490)
+.-.
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 8754
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-27 Score=193.96 Aligned_cols=306 Identities=17% Similarity=0.241 Sum_probs=227.5
Q ss_pred cccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 29 ~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
-+..+|++.|..++-......+.+++.|.+.+||.++++.+ +..+.||.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----------------------L~~Y~GH~-------- 190 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-----------------------LATYTGHT-------- 190 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-----------------------eeeecccc--------
Confidence 35678999999999998888999999999999999999885 57799999
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEE----eeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV----FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
+.|++|.|++ .+.++++++.|++..||...-.-.... ..+....+ ...+ |..
T Consensus 191 ----GSVNsikfh~--s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE-----------------~e~s-De~ 246 (481)
T KOG0300|consen 191 ----GSVNSIKFHN--SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE-----------------EEHS-DEH 246 (481)
T ss_pred ----cceeeEEecc--ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh-----------------hhcc-ccc
Confidence 9999999997 456899999999999997432110000 00000000 0000 000
Q ss_pred ccccccccCCCCcccc---CCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEE
Q 011257 185 CGERNFGCASNDSSFP---PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~---~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd 260 (490)
+-... .+...+|++ ++..+ .+|...|.+..|-..|+.++++ .|.+..+||
T Consensus 247 -----------~~d~d~~~~sD~~tiRv--------------Pl~~l-tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 247 -----------NRDTDSSEKSDGHTIRV--------------PLMRL-TGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred -----------ccccccccccCCceeee--------------eeeee-eccccceEehhhhcCcceeeeeeccccceeee
Confidence 00000 011113332 23333 7899999999999999999999 899999999
Q ss_pred cCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccc
Q 011257 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (490)
++++. ..+ .+.+|....+.+.-+|.. +++++++.|.+.++||++..- ..+.. |++|
T Consensus 301 VEtge-~v~-------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI---~sV~V------------FQGH 356 (481)
T KOG0300|consen 301 VETGE-VVN-------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI---QSVAV------------FQGH 356 (481)
T ss_pred eccCc-eec-------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc---ceeee------------eccc
Confidence 99554 444 478999999999999998 999999999999999998531 11233 5566
Q ss_pred ccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 341 ~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
...|+++.|..|. .+++|+ |.+|++||+++...++.++...... ..++.+..++.|+.--++
T Consensus 357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDN 419 (481)
T KOG0300|consen 357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDN 419 (481)
T ss_pred ccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCC
Confidence 6899999998765 466765 5999999999877888888766543 378899888899998899
Q ss_pred CeEEEEecCCCcee---eeEeccCCCceEEEEEccCCCCC
Q 011257 420 NLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 420 g~i~vw~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
..|++||+...... ...-.+|...|.+++|..+-+..
T Consensus 420 RqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~c 459 (481)
T KOG0300|consen 420 RQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPAC 459 (481)
T ss_pred ceEEEEecCCCccccCCcccccccceeeeeeeccccCccc
Confidence 99999999865421 12456899999999999776643
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-25 Score=186.03 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=211.2
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
++.|+++.|+|.++.|+++++||.+++|++..... ...-.|. .+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------------------------~~~~~~~------------~p 56 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------------------------KLKFKHG------------AP 56 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------------------------hhheecC------------Cc
Confidence 57899999999999999999999999999986541 1122344 77
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
+.+.+|.+ ...+++|+.||.|+.+|+.++....
T Consensus 57 lL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~-------------------------------------------- 89 (323)
T KOG1036|consen 57 LLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQ-------------------------------------------- 89 (323)
T ss_pred eeeeeccC---CceEEEeccCceEEEEEecCCccee--------------------------------------------
Confidence 99999974 5689999999999999999876322
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
+..|...+.++.+++....+++| .|++|++||.+.......
T Consensus 90 ----------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~---- 131 (323)
T KOG1036|consen 90 ----------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT---- 131 (323)
T ss_pred ----------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc----
Confidence 24667889999999887788888 899999999985322211
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
......|.++.... +.|+.|+.|..+.+||+++.... . +..... ..-.+++|++-|++
T Consensus 132 -----~d~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~---~-q~reS~----------lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 132 -----FDQGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEP---F-QRRESS----------LKYQTRCVALVPNG 189 (323)
T ss_pred -----cccCceEEEEeccC---CEEEEeecCceEEEEEcccccch---h-hhcccc----------ceeEEEEEEEecCC
Confidence 12234777776653 67899999999999999986432 1 111110 11468999999987
Q ss_pred CEEEEEc-CCeEEEEeccCCC----CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 354 RHILSRD-YMTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 354 ~~l~sg~-d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
.-.++++ ||.|.+=.++. . .....++.|.... ...+.+++|.+++|+|-...||||+.||.|.+||+.
T Consensus 190 eGy~~sSieGRVavE~~d~-s~~~~skkyaFkCHr~~~------~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 190 EGYVVSSIEGRVAVEYFDD-SEEAQSKKYAFKCHRLSE------KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred CceEEEeecceEEEEccCC-chHHhhhceeEEeeeccc------CCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 7666664 79998877664 3 4456777787543 233456688999999999999999999999999999
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+.+. +..+......|..++|+-||..++.++.
T Consensus 263 ~rKr-l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 263 NRKR-LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred chhh-hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 8876 6777777788999999999999887754
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.6e-26 Score=183.07 Aligned_cols=274 Identities=15% Similarity=0.225 Sum_probs=204.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.+|+|+ .+|..|++++.|+++++|+++..+.........+. +.+. .++|.|...
T Consensus 21 ~~v~Sv~wn--~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~------~svd-------ql~w~~~~~-------- 77 (313)
T KOG1407|consen 21 QKVHSVAWN--CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT------DSVD-------QLCWDPKHP-------- 77 (313)
T ss_pred hcceEEEEc--ccCceeeecccCCceEEEEecchhhhhhhcccCCC------cchh-------hheeCCCCC--------
Confidence 889999998 58889999999999999999887443322222111 1111 445555443
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
|.+++++.|.+|++||+ .. .+|.... .. ...=.-+.|+|+|++++.+ .|..|...|.++.. ...
T Consensus 78 ---d~~atas~dk~ir~wd~-r~------~k~~~~i-~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~-- 142 (313)
T KOG1407|consen 78 ---DLFATASGDKTIRIWDI-RS------GKCTARI-ET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYK-IVN-- 142 (313)
T ss_pred ---cceEEecCCceEEEEEe-cc------CcEEEEe-ec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccc-eee--
Confidence 48999999999999993 22 2222222 11 1222357899999999999 89999999998443 222
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
-....-.+..+.|+.++ .+|..-...|+|.|.....-+ ++..+..| .....||.|+|
T Consensus 143 ------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk----pv~si~AH------------~snCicI~f~p 199 (313)
T KOG1407|consen 143 ------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK----PVQSIKAH------------PSNCICIEFDP 199 (313)
T ss_pred ------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccc----cccccccC------------CcceEEEEECC
Confidence 12234567788898777 777777778999998877543 34555555 47899999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+|+|+|+|+ |-.+.+||++- .-+++.+.-+.-. |..++||.||++||+|++|..|-|=++++|
T Consensus 200 ~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwp---------------VRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 200 DGRYFATGSADALVSLWDVDE-LICERCISRLDWP---------------VRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred CCceEeeccccceeeccChhH-hhhheeeccccCc---------------eEEEEeccCcceeeccCccceEEeEecccC
Confidence 999999985 69999999984 7777777766544 569999999999999999999999999999
Q ss_pred ceeeeEeccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
.. +..+ .+.++...++|+|..+..+.+..++..
T Consensus 264 d~-~~eI-~~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 264 DR-VWEI-PCEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred Ce-EEEe-eccCCceeEEecCCCceeeEEecCCCC
Confidence 87 3333 467899999999999999988877665
No 82
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=3.2e-26 Score=209.04 Aligned_cols=385 Identities=15% Similarity=0.153 Sum_probs=265.4
Q ss_pred ccccccccEEEEEECCCCC---EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcc----------cccccc
Q 011257 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF----------RYKTEF 96 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~---~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~ 96 (490)
+.-+|.+.|.+++|..-+. +||+++.|..||||.+.-.........+...+. ++-.|.+ .+.+.+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~--~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT--LSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc--ccCCceeeeeeeEEEEEehhhhh
Confidence 4558999999999998543 899999999999999875543221111111110 0001111 112345
Q ss_pred ccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe--EEEEeeeccCCCcCCCCCCcccccccc
Q 011257 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (490)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (490)
.||+ +.|+++.|.| .+..|++++.|.++.+|...... .......... ......-
T Consensus 264 ~GHe------------DWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~----------gg~a~GF 319 (764)
T KOG1063|consen 264 MGHE------------DWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV----------GGSAGGF 319 (764)
T ss_pred cCcc------------cceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecc----------cccccce
Confidence 6787 9999999997 55689999999999999877653 2222222211 1111112
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (490)
...-|+|++. .+++-+..|..++|. .+. ...........||...|.+++|+|.|++|++. .|
T Consensus 320 ~g~lw~~n~~------------~ii~~g~~Gg~hlWk----t~d-~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~D 382 (764)
T KOG1063|consen 320 WGGLWSPNSN------------VIIAHGRTGGFHLWK----TKD-KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLD 382 (764)
T ss_pred eeEEEcCCCC------------EEEEecccCcEEEEe----ccC-ccceeeccccccccccceeeeecCCCCEEEEeccc
Confidence 2567888886 788999999999996 111 22223333458999999999999999999998 89
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc---------c------
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL---------C------ 318 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~---------~------ 318 (490)
.+-++|-.-..++....+ .+-+-|...++|++|-+.. ..|++|.....+|+|+....-. +
T Consensus 383 QTTRlFa~wg~q~~wHEi----aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~ 457 (764)
T KOG1063|consen 383 QTTRLFARWGRQQEWHEI----ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDE 457 (764)
T ss_pred cceeeecccccccceeee----cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchh
Confidence 999998765333332221 2335577889999999864 7899999999999998653200 0
Q ss_pred -------------ccccce------------ec--------------------cccCCCccccccccccceEEEEECCCC
Q 011257 319 -------------DTHSKL------------FE--------------------EQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 319 -------------~~~~~~------------~~--------------------~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.++... .+ .+........+.||...|.+++.+|+|
T Consensus 458 ~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g 537 (764)
T KOG1063|consen 458 LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG 537 (764)
T ss_pred cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC
Confidence 000000 00 000001112346799999999999999
Q ss_pred CEEEEE--c----CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 354 RHILSR--D----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 354 ~~l~sg--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
+++|++ + .-.|++|+..+ -...+.+.+|.-. |+.++|||||++|++++.|+++.+|..
T Consensus 538 nliASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 538 NLIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred CEEeehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeee
Confidence 999985 2 16899999997 6777789999876 679999999999999999999999998
Q ss_pred CCCcee---eeEeccCCCceEEEEEccCCCCCCCCccCcceecCeeecccccee
Q 011257 428 SEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRGMFTHIQLLCI 478 (490)
Q Consensus 428 ~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (490)
...... ....+.|...|.+..|+|++...+.++-++...-+.....+..|+
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhh
Confidence 755332 234789999999999999999888777777655554444433333
No 83
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.6e-27 Score=187.02 Aligned_cols=266 Identities=16% Similarity=0.283 Sum_probs=202.4
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+.+|.+.|..+...-.|+.|||++.|++|+|+.+..+.. ..++.+|.||.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~--------- 56 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS--------- 56 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence 4568999999999999999999999999999999987652 23578899999
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
++|..++|..-.-|.+|++++.||.|.||.-++++..+......+ . .+.++++|.|.+-..
T Consensus 57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h------~-------~SVNsV~wapheygl--- 117 (299)
T KOG1332|consen 57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH------S-------ASVNSVAWAPHEYGL--- 117 (299)
T ss_pred ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh------c-------ccceeecccccccce---
Confidence 999999998545688999999999999999999866554443332 1 223378888877643
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC---C-----------CEEEEe-cCC
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---G-----------ETFISA-DDL 254 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~-----------~~l~~~-~d~ 254 (490)
.|++++.||.|.+.+ .... .+.........|.-.|++++|.|. | +.|++| .|.
T Consensus 118 -------~LacasSDG~vsvl~-~~~~----g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 118 -------LLACASSDGKVSVLT-YDSS----GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred -------EEEEeeCCCcEEEEE-EcCC----CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 788999999999987 2222 122222334789999999999986 4 569998 899
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH---CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.|++|+.....-... .++.+|.+.|+.++|.|.- ...+|++++||++.||..+..... ++
T Consensus 186 ~VkiW~~~~~~w~~e------~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk----- 248 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLE------RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WK----- 248 (299)
T ss_pred ceeeeecCCcchhhh------hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------cc-----
Confidence 999999985422221 2588999999999999964 257999999999999987732111 11
Q ss_pred CccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCC
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~ 374 (490)
..++......+..+.||..|..|+.+ .|+.+.+|.-..+++
T Consensus 249 --~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 249 --KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred --ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 11122233689999999999999985 679999998765343
No 84
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=2.2e-25 Score=183.48 Aligned_cols=309 Identities=16% Similarity=0.265 Sum_probs=216.1
Q ss_pred cccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccc-cccceeecCCccccccccccCCcccceeee
Q 011257 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLE-MMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
...|.+.|.++...+ .|+|+++|+.||.|.+||++....-.. ..+. +..+.+ -...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c~v-------~~~h~~~Hk-------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKCIV-------AKQHENGHK-------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheeeec-------cccCCccce--------
Confidence 457999999999999 689999999999999999986541100 0000 000000 001123454
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
-.|..+.|.|. |...|.+++.|.++++||..+.+....++++
T Consensus 102 ----y~iss~~WyP~-DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me--------------------------------- 143 (397)
T KOG4283|consen 102 ----YAISSAIWYPI-DTGMFTSSSFDHTLKVWDTNTLQEAVDFKME--------------------------------- 143 (397)
T ss_pred ----eeeeeeEEeee-cCceeecccccceEEEeecccceeeEEeecC---------------------------------
Confidence 77999999994 4458999999999999999987755544433
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC---CCCEEEEe-cCCcEEEEEcCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
+.|.+-+++| ...++|+| .+-.|++-|+..+
T Consensus 144 ---------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 144 ---------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ---------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 2223333444 24467778 8999999999844
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc--cccccccc
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR--SFFTEIIA 342 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~ 342 (490)
.... .+.+|...|.++.|+|...-.|++|+.||.|++||++...-| ++.++.|....+. ..-..|.+
T Consensus 179 -s~sH-------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 179 -SFSH-------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred -ccee-------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccc
Confidence 4433 578999999999999998778999999999999999976545 5666666532211 23467889
Q ss_pred ceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCceeeeee--eccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 343 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQV--HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
.+..++|+.||+++++ |.|..+++|+..+....+..+-. |... .-..+ -+. +.+...++---.+
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-----------~~~~~-~~~-~~~s~vfv~~p~~ 314 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT-----------TSFAV-HIQ-SMDSDVFVLFPND 314 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc-----------ccceE-EEe-ecccceEEEEecC
Confidence 9999999999999998 46899999999863222222211 1110 00111 122 3344455555567
Q ss_pred CeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 420 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
+.+.++++-+|.. +..+..|-..+.+.++.|+-.....+..+..
T Consensus 315 ~~lall~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n 358 (397)
T KOG4283|consen 315 GSLALLNLLEGSF-VRRLSTHLKRINCAAYRPDFEQCFTGDMNGN 358 (397)
T ss_pred CeEEEEEccCceE-EEeeecccceeeEEeecCchhhhhccccCCc
Confidence 8999999999987 7899999999999999998877776655443
No 85
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=5.6e-25 Score=193.79 Aligned_cols=364 Identities=16% Similarity=0.152 Sum_probs=244.3
Q ss_pred ccccccccccccEEEEEECCCCCEEEEecCCC--------cEEEEEecCCCCCCCcccccccccceeecCCcc--ccccc
Q 011257 26 RTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF--RYKTE 95 (490)
Q Consensus 26 ~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~ 95 (490)
+.+.....|.+.|.|++.+||.-.+|+|-..| .|+|||..+...+ .......+.+++++|++.. .++..
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL-~V~g~f~~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTL-HVIGFFDRGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceee-eeeccccccceeeeecccCCCceEEE
Confidence 34445678999999999999998898876554 4999995544322 2223556778888888743 11111
Q ss_pred cc---cCCcc-cceeee-----e-eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCC
Q 011257 96 FQ---SHEPE-FDYLKS-----L-EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (490)
Q Consensus 96 ~~---~h~~~-~~~~~~-----~-~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
.. .|-.. ++..+. . ...+.|....|+|. +.+.+++.+ .+.+.+|+++++.+......-...+.
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPt-d~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ek----- 246 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPT-DPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREK----- 246 (626)
T ss_pred ecCCCccccchhhchhhhccCcceeccceEEEEEeccC-CCcEEEEeC-CceEEEEEccCCceEEEeeccccccc-----
Confidence 11 11000 000000 0 12255788899993 345555555 67999999998876554433222111
Q ss_pred CccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC
Q 011257 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (490)
Q Consensus 166 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (490)
....+++|.++|. +++|..+|.|.||+ ... .+..+.. ..|.+.|.+++...+|
T Consensus 247 ------k~Vl~v~F~engd-------------viTgDS~G~i~Iw~----~~~---~~~~k~~-~aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 247 ------KFVLCVTFLENGD-------------VITGDSGGNILIWS----KGT---NRISKQV-HAHDGGVFSLCMLRDG 299 (626)
T ss_pred ------eEEEEEEEcCCCC-------------EEeecCCceEEEEe----CCC---ceEEeEe-eecCCceEEEEEecCc
Confidence 1223888999987 69999999999999 111 1222233 3899999999999999
Q ss_pred CEEEEe-cCCcEEEEEcCCCCc-----------eeeeeecC---------------------CCccCCCCCceEEEEEcC
Q 011257 246 ETFISA-DDLRINLWNLEISNQ-----------SFNIVDVK---------------------PANMEDLTEVITSAEFHP 292 (490)
Q Consensus 246 ~~l~~~-~d~~i~~wd~~~~~~-----------~~~~~~~~---------------------~~~~~~~~~~v~~~~~~p 292 (490)
.+|- | .|..|..||-.-... ...+.+.+ .....+|....+.++.+|
T Consensus 300 tllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 300 TLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred cEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence 8776 7 899999998431110 00000000 012356788899999999
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccC
Q 011257 293 THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (490)
Q Consensus 293 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~ 371 (490)
+. ..++|++.|+.+++|+ ..++... +.+. .+..++.|+|.| .+|.|.- |...+.|..+
T Consensus 379 s~-~q~~T~gqdk~v~lW~--~~k~~wt--~~~~---------------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 379 SK-NQLLTCGQDKHVRLWN--DHKLEWT--KIIE---------------DPAECADFHPSG-VVAVGTATGRWFVLDTET 437 (626)
T ss_pred Ch-hheeeccCcceEEEcc--CCceeEE--EEec---------------CceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence 98 9999999999999999 3332211 1111 578999999999 8888865 9999999986
Q ss_pred CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceee-eEeccCCCceEEEEEc
Q 011257 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRRQVQT 450 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~s 450 (490)
...+ ++...... +..++|+|+|.+||.|+.|+.|+||.+..+.... +.-+-+..+|+.+.||
T Consensus 438 -~~lv-~~~~d~~~---------------ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 438 -QDLV-TIHTDNEQ---------------LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred -ceeE-EEEecCCc---------------eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 3333 33222222 4589999999999999999999999998654323 3334445899999999
Q ss_pred cCCCCCCCCccCc
Q 011257 451 PSRPSRPLGSLSG 463 (490)
Q Consensus 451 p~~~~~~~~~~~~ 463 (490)
+|++....-+.+-
T Consensus 501 ~Ds~~~~~~S~d~ 513 (626)
T KOG2106|consen 501 SDSQFLVSNSGDY 513 (626)
T ss_pred CCCceEEeccCce
Confidence 9999887666554
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=9.2e-26 Score=206.66 Aligned_cols=349 Identities=13% Similarity=0.149 Sum_probs=243.6
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec-ccee
Q 011257 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE-EKIN 116 (490)
Q Consensus 38 V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~-~~V~ 116 (490)
..++.|++....|.....|..++|||+.+-...+. ...+-.|...++.++.++.. ..-+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk--------------------~~s~lyHS~ciW~Ve~~p~nv~~~~ 386 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK--------------------CSSMLYHSACIWDVENLPCNVHSPT 386 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccc--------------------eeeeeeccceeeeeccccccccCcc
Confidence 35788999999999999999999999987654311 12344566444443333210 1111
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeec------------cCCCc----------CCCCCCcccccccc
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN------------VHPEK----------AAGNGPIFGSHVSA 174 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~------------~~~~~----------~~~~~~~~~~~~~~ 174 (490)
+.+. | ...|++++.|++||+|++.....-.+...+ ....+ .........+....
T Consensus 387 ~acl-p---~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~ 462 (1080)
T KOG1408|consen 387 AACL-P---RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGF 462 (1080)
T ss_pred cccC-C---ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccce
Confidence 2222 2 236999999999999999863221211000 00000 01111223333445
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC---CCEEEEe
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA 251 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~ 251 (490)
.+++.+|+|+ +|++|..-|++++|++ ...+. ..+..+|...|.|+.|+.. .++||++
T Consensus 463 R~~~vSp~gq------------hLAsGDr~GnlrVy~L-q~l~~-------~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 463 RALAVSPDGQ------------HLASGDRGGNLRVYDL-QELEY-------TCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred EEEEECCCcc------------eecccCccCceEEEEe-hhhhh-------hhheecccceeEEEeecCchhhhHhhhhc
Confidence 6889999999 9999999999999993 22211 1124799999999999863 6778888
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
.|..|++||+...-...+ ++.+|...|+++.|.-.| ...+++++.|..|.+--.+.... -..|..+.
T Consensus 523 srdRlIHV~Dv~rny~l~q-------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~----g~~f~r~t 591 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQ-------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS----GRLFPRHT 591 (1080)
T ss_pred cCCceEEEEecccccchhh-------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC----ceeccccc
Confidence 899999999985544443 678999999999997654 35788999998876533221110 12222221
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
.. --...+..++..|..++++++ .|..|+|||+.+ ++..+.+++..+.... ...+...|
T Consensus 592 ~t-------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~------------lIKv~lDP 651 (1080)
T KOG1408|consen 592 QT-------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGD------------LIKVILDP 651 (1080)
T ss_pred cc-------cccceEEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCc------------eEEEEECC
Confidence 10 011468999999999999986 689999999997 9999999886654221 12788999
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
.|.|||+.+.|.++.++|..+|++ +....+|...|+.+.|.+|-+.....+.+
T Consensus 652 SgiY~atScsdktl~~~Df~sgEc-vA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 652 SGIYLATSCSDKTLCFVDFVSGEC-VAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred CccEEEEeecCCceEEEEeccchh-hhhhcCcchheeeeeecccchhheeecCC
Confidence 999999999999999999999999 68899999999999999999987766544
No 87
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=182.00 Aligned_cols=227 Identities=19% Similarity=0.308 Sum_probs=186.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
++|..++|+ .+|++.++++.|++|++|+...+.+...
T Consensus 18 gaV~avryN--~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEEc--cCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 999999998 5788999999999999999877754432
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+ .+|...|..++.+.|...|++| .|..+.+||+.+++...
T Consensus 55 -----------------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--- 95 (307)
T KOG0316|consen 55 -----------------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR--- 95 (307)
T ss_pred -----------------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeee---
Confidence 2 5777888999999999999998 89999999999665443
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+.+|.+.|+.++|+.+. ..+++|+.|.++++||.++... +|+..+.... ..|.++..+
T Consensus 96 -----r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQildea~------------D~V~Si~v~- 154 (307)
T KOG0316|consen 96 -----RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDEAK------------DGVSSIDVA- 154 (307)
T ss_pred -----ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhhhc------------CceeEEEec-
Confidence 578999999999999998 8999999999999999998643 4456655544 679999886
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+..|++|+ ||+++.||++. +.....+-+|. |++++|++|++.++.++-|+++++.|-.+|
T Consensus 155 -~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred -ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 66788875 79999999997 77666665554 569999999999999999999999999999
Q ss_pred ceeeeEeccCCCceEEE--EEccCCCCCCCCccC
Q 011257 431 SAESTTLEASKNPMRRQ--VQTPSRPSRPLGSLS 462 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~--~~sp~~~~~~~~~~~ 462 (490)
+. +...++|.+.-+.+ +++.....+..++-+
T Consensus 216 kl-L~sYkGhkn~eykldc~l~qsdthV~sgSED 248 (307)
T KOG0316|consen 216 KL-LKSYKGHKNMEYKLDCCLNQSDTHVFSGSED 248 (307)
T ss_pred HH-HHHhcccccceeeeeeeecccceeEEeccCC
Confidence 88 78999998766654 455555555555443
No 88
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=186.18 Aligned_cols=317 Identities=13% Similarity=0.143 Sum_probs=197.0
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
.-.|.+.|++++||.||++|||++.|+.|+||++.+-... +.+++..- ++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~------------------eHr~~R~n------------ve 131 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK------------------EHRCIRQN------------VE 131 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh------------------hhhHhhcc------------cc
Confidence 3469999999999999999999999999999999764311 11111110 00
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccc-cCceEEeccCCccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS-AIPKSYMANGGCGERN 189 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~~~~~ 189 (490)
. +..+.++|.|+.. ..+++.-...++++|.+...+- ....++........ +...+.. ...+-....++
T Consensus 132 ~-dhpT~V~FapDc~-s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~---f~~kh~v~~i~iGiA~~~k----- 200 (420)
T KOG2096|consen 132 Y-DHPTRVVFAPDCK-SVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLE---FERKHQVDIINIGIAGNAK----- 200 (420)
T ss_pred C-CCceEEEECCCcc-eEEEEEccCCEEEEEEeeeccc-CCCCcccccccccc---cchhcccceEEEeecCCce-----
Confidence 0 2367899998543 4555566677899998754321 00000000000000 0000000 00112222333
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC-ce
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QS 267 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~-~~ 267 (490)
+|++++.|..|.+|+ +.+.... .. +.....-...+.+|+|++++++ -.-.|++|.+--.+ ..
T Consensus 201 -------~imsas~dt~i~lw~-lkGq~L~-------~i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~ 264 (420)
T KOG2096|consen 201 -------YIMSASLDTKICLWD-LKGQLLQ-------SI-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT 264 (420)
T ss_pred -------EEEEecCCCcEEEEe-cCCceee-------ee-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc
Confidence 899999999999999 4433221 11 2223344567899999999997 67779999874221 11
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
++.+ .+...+.+|...|..++|+|+. ..+++.+.||++++||+.-.-...+-.+.+.... .++..-.+.-..+
T Consensus 265 fqev-~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----~pl~aag~~p~RL 337 (420)
T KOG2096|consen 265 FQEV-KRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----APLHAAGSEPVRL 337 (420)
T ss_pred hhhh-hhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcCC-----cchhhcCCCceEE
Confidence 1100 0112578999999999999998 9999999999999999864211111111111110 0011111334489
Q ss_pred EECCCCCEEEEEcCCeEEEEeccCCCCceeeee-eeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 348 ~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
..+|.|+.||.+....+++|..++ ++....++ .|... |.+++|+++|+++++++ |..+++..
T Consensus 338 ~lsP~g~~lA~s~gs~l~~~~se~-g~~~~~~e~~h~~~---------------Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGSDLKVFASED-GKDYPELEDIHSTT---------------ISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EeCCCCcEEEeecCCceEEEEccc-CccchhHHHhhcCc---------------eeeEEecCCCcEEeeec-ceeeeeec
Confidence 999999999998777899999887 66554443 34333 55999999999999987 57788877
Q ss_pred cC
Q 011257 427 CS 428 (490)
Q Consensus 427 ~~ 428 (490)
-.
T Consensus 401 nt 402 (420)
T KOG2096|consen 401 NT 402 (420)
T ss_pred CC
Confidence 43
No 89
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=187.04 Aligned_cols=310 Identities=15% Similarity=0.240 Sum_probs=220.1
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
.-...+.|||||..|++-+.|..+.+|++....-- .........+..+.+++ .....|
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys-----~~~~~~~~~~~~~~~r~-----------------~eg~tv 107 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYS-----KKADGPLNFSKHLSYRY-----------------QEGETV 107 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcc-----cCCCCccccccceeEEe-----------------ccCCEE
Confidence 34567899999999999999999999998643210 00000011111111111 112457
Q ss_pred eEEEEee-----cCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 116 NKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 116 ~~v~~~p-----~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..-+|.+ .++..++++.+.|.-|++||.-+++.......
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------ 151 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------ 151 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh------------------------------------
Confidence 7778874 24456889999999999999998876542211
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~ 270 (490)
|| . ...+ ....+++|+|||..|++|....|++||+...+.....
T Consensus 152 -------------------yd------h------~de~-----taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 152 -------------------YD------H------QDEY-----TAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred -------------------hh------h------HHhh-----hhheeEEecCCCCeEeecccceEEEeeccCCCCCCcc
Confidence 11 0 0000 2346899999999999999999999999545544332
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.......-.+..+-+.+++|+|..+..++.|+...++-||.-..... +..+-+ |.+.|+.++|.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----l~llgg------------h~gGvThL~~~ 259 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----LQLLGG------------HGGGVTHLQWC 259 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc----eeeecc------------cCCCeeeEEec
Confidence 22111122345778899999998867999999999999887666543 344444 45899999999
Q ss_pred CCCCEEEEEc--CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 351 p~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
++|+.|++|. +..|-.||++....++..+..|....+ ..| -....|++++|++|+.||.|++||++
T Consensus 260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QRI----~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN--------QRI----LFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc--------ceE----EEecCCCCceeeccCCCccEEEEecC
Confidence 9999999985 489999999986788888887765221 111 35667899999999999999999999
Q ss_pred C-CceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 429 E-GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 429 ~-~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
. |.. ...+..+++.++.++++|--++.+.++..+.+..-
T Consensus 328 ~~gn~-~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 328 DLGNE-VSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYP 367 (406)
T ss_pred CCCCc-ccccccccccccceecCcccceeeeccCceeecCC
Confidence 8 554 57888899999999999998888877765554443
No 90
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.1e-25 Score=209.36 Aligned_cols=220 Identities=14% Similarity=0.170 Sum_probs=163.0
Q ss_pred cccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..+|.+.|++++|+| ++++||+|+.|++|++||+.+...... ....+..+.+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~----------------~~~~l~~L~gH~--------- 125 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN----------------ISDPIVHLQGHT--------- 125 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc----------------cCcceEEecCCC---------
Confidence 457999999999999 889999999999999999976431100 011245678888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.+++|+|.. +.+|++++.|++|+|||+.+++....
T Consensus 126 ---~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~-------------------------------------- 163 (493)
T PTZ00421 126 ---KKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEV-------------------------------------- 163 (493)
T ss_pred ---CcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEE--------------------------------------
Confidence 889999999843 35899999999999999987653221
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+.+|...|.+++|+|++.+|+++ .|+.|++||+++....
T Consensus 164 ---------------------------------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v- 203 (493)
T PTZ00421 164 ---------------------------------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV- 203 (493)
T ss_pred ---------------------------------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-
Confidence 14566789999999999999999 8999999999865433
Q ss_pred eeeecCCCccCCCCCc-eEEEEEcCCCCcEEEEEe----CCCeEEEEeCCCccccccccceeccccCCCccccccccccc
Q 011257 269 NIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSS----SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
. .+.+|... +..+.|.+++ ..+++++ .|+.|++||+++.... +.....+. ...
T Consensus 204 ~-------tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d~-----------~~~ 261 (493)
T PTZ00421 204 S-------SVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLDQ-----------SSA 261 (493)
T ss_pred E-------EEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccCC-----------CCc
Confidence 2 24556543 4567889887 5665543 4799999999875421 22222111 134
Q ss_pred eEEEEECCCCCEEEEE--cCCeEEEEeccCCCCceeeee
Q 011257 344 ISDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg--~d~~i~iwd~~~~~~~~~~~~ 380 (490)
+....|++++.+|+++ +|+.|++||+.. ++++....
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-~~~~~~~~ 299 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMN-ERLTFCSS 299 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-CceEEEee
Confidence 6667899999998875 379999999996 66665543
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.4e-25 Score=182.95 Aligned_cols=273 Identities=17% Similarity=0.285 Sum_probs=202.0
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (490)
..-|.+.++|. ...|.++|++++.+ +.|+|+|+.|-+|+|||+..... +
T Consensus 28 s~~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------------l 76 (362)
T KOG0294|consen 28 SVKPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------------L 76 (362)
T ss_pred ccceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------------h
Confidence 34466666655 55799999999987 88999999999999999987663 3
Q ss_pred cccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccc
Q 011257 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (490)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (490)
..+..|. +.|+++.|.+...-+.|++|+.||.|.+|+...-.+..
T Consensus 77 g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~----------------------- 121 (362)
T KOG0294|consen 77 GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK----------------------- 121 (362)
T ss_pred cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee-----------------------
Confidence 5567787 88999999974444589999999999999976543221
Q ss_pred cCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c
Q 011257 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (490)
Q Consensus 174 ~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (490)
. +++|...|+.++.+|.+++.++. .
T Consensus 122 -----------------------------------------------------s-lK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 122 -----------------------------------------------------S-LKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred -----------------------------------------------------e-ecccccccceeEecCCCceEEEEcC
Confidence 1 36888889999999999988876 8
Q ss_pred CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCC
Q 011257 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 253 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
|+.+++||+-.++..+.. .+ ....+.+.|+|.| ..|+.+..+ .|-+|.+.+..+. ..+...
T Consensus 148 D~~lr~WNLV~Gr~a~v~------~L---~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~~---- 208 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVL------NL---KNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIENP---- 208 (362)
T ss_pred CceeeeehhhcCccceee------cc---CCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhcc----
Confidence 999999999866554332 11 2334459999999 888887776 5889998875532 222221
Q ss_pred ccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEE--EcCC
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LSGD 409 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d 409 (490)
..+.++.|. ++.+|++| +++.|.+||.+. ..++..+.+|...+. ++. -.|+
T Consensus 209 ---------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~ 262 (362)
T KOG0294|consen 209 ---------KRILCATFL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPE 262 (362)
T ss_pred ---------ccceeeeec-CCceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCC
Confidence 346777776 45566665 669999999997 899999999987643 444 3457
Q ss_pred CCEEEEeecCCeEEEEecCCCce----eeeEeccCCCceEEEEEccC
Q 011257 410 GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~~----~~~~~~~~~~~v~~~~~sp~ 452 (490)
+.+|++++.||.|+|||++.... .+..+.. ...++|+...-.
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~~ 308 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKLE 308 (362)
T ss_pred ceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehhh
Confidence 88999999999999999986521 1222222 456677665543
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=6.2e-25 Score=178.42 Aligned_cols=285 Identities=16% Similarity=0.200 Sum_probs=207.9
Q ss_pred ccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccccc
Q 011257 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (490)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (490)
.++||+ .+++.|.++ .+|.+|++++.|.+..+|-..+|+.......+ .|.++
T Consensus 5 ~l~GHE------------RplTqiKyN--~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW------ 56 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKYN--REGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVW------ 56 (327)
T ss_pred ccccCc------------cccceEEec--CCCcEEEEecCCCCceEEEecCCceeeeecCC--------CceEE------
Confidence 367888 889999998 57889999999999999988777766655444 23444
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c-
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D- 252 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~- 252 (490)
++...-+.+ .+++|+.|.++++||+.. ++++..+ .....|..+.|+++|++++.+ +
T Consensus 57 -~~Did~~s~------------~liTGSAD~t~kLWDv~t-------Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 57 -CCDIDWDSK------------HLITGSADQTAKLWDVET-------GKQLATW--KTNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred -EEEecCCcc------------eeeeccccceeEEEEcCC-------CcEEEEe--ecCCeeEEEeeccCCcEEEEEehh
Confidence 444555555 899999999999999433 3333333 234788999999999988875 2
Q ss_pred ----CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccc
Q 011257 253 ----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 253 ----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
.+.|.++|++........ +..-..+..+...++.+-|.|-+ ..|++|..||.|.+||++++... +..-+
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s-~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---v~s~~-- 187 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDS-EEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---VDSDE-- 187 (327)
T ss_pred hcCcceEEEEEEccCChhhhcc-cCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee---eechh--
Confidence 467999999843211000 00001235567889999999999 99999999999999999998543 22222
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
.|...|+.++++||..++++++ |.+-++||..+ -..++++..... |.+.+++
T Consensus 188 ----------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aais 240 (327)
T KOG0643|consen 188 ----------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAIS 240 (327)
T ss_pred ----------hhccccccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecc
Confidence 3457899999999999999986 69999999997 777777766543 3589999
Q ss_pred CCCCEEEEeecCC--eEEEEecCCCc-----------eeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 408 GDGGRVATGSYSN--LFRVFGCSEGS-----------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 408 ~d~~~l~s~~~dg--~i~vw~~~~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
|...+++.|+... .|.-=+.+.|+ ..+..+++|-+||++++|||||+....+.-++
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG 309 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG 309 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc
Confidence 9877777665322 22222223332 22577899999999999999999877665443
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=194.29 Aligned_cols=293 Identities=15% Similarity=0.168 Sum_probs=210.9
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
.+.|+++.|+|...+|++++.|++++||.++..... .++.+.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------Cc
Confidence 578999999999999999999999999999865521 122222222 56
Q ss_pred eeEEEEeecCCCc-EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 115 INKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 115 V~~v~~~p~~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
|.+.+|.| +|. .+++++.......||+.+.+..++....+.+.+ .-..+..++++.
T Consensus 260 i~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~------------~~e~FeVShd~~--------- 316 (514)
T KOG2055|consen 260 IQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK------------SMERFEVSHDSN--------- 316 (514)
T ss_pred cceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCcccc------------hhheeEecCCCC---------
Confidence 89999997 555 889999999999999999887766554433211 111456678887
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+|+..+..|.|.+.. ....+. +..+ .-.+.|..++|+.+++.|+++ .+|.|.+||++.. .+.+.+
T Consensus 317 ---fia~~G~~G~I~lLh-akT~el------i~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf- 382 (514)
T KOG2055|consen 317 ---FIAIAGNNGHIHLLH-AKTKEL------ITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRF- 382 (514)
T ss_pred ---eEEEcccCceEEeeh-hhhhhh------hhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEE-
Confidence 899999999999965 111111 1111 223678899999999988887 8999999999955 444432
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc--cccccceeccccCCCccccccccccceEEEEEC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.....-.-++++.++++ .+||+|+..|.|.|||..+-.. ..+|++++ ......|++++|+
T Consensus 383 -----~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~------------dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 383 -----VDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTV------------DNLTTAITSLQFN 444 (514)
T ss_pred -----eecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhh------------hhhheeeeeeeeC
Confidence 12222234678888999 8999999999999999765211 11222222 2233689999999
Q ss_pred CCCCEEEEEc---CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 351 RNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 351 p~g~~l~sg~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
||++.||.++ ...+++-.+-+ ......+.... ..+..|++++|||.+.+||.|..+|.|.+|.+
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~n------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPS-CTVFSNFPTSN------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cchhhhhhhhhccccceEEEeccc-eeeeccCCCCC------------CcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 9999999875 38899888865 33333333322 22333779999999999999999999999987
Q ss_pred C
Q 011257 428 S 428 (490)
Q Consensus 428 ~ 428 (490)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 5
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.5e-25 Score=193.99 Aligned_cols=272 Identities=13% Similarity=0.195 Sum_probs=191.8
Q ss_pred cCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEe--------eeccCCCcCCCCCCccc
Q 011257 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF--------DWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 98 ~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 169 (490)
.+...+.....+.|.+.|+.+++.| .+...+++.+..+.|.|||.....-.... .+.++.
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRymP-Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~----------- 177 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARYMP-QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE----------- 177 (422)
T ss_pred ccccceEEEEeccCCccchhhhhCC-CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----------
Confidence 3343444455556779999999999 45578888899999999998754221111 111111
Q ss_pred cccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EE
Q 011257 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TF 248 (490)
Q Consensus 170 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l 248 (490)
.....++|++.... .+++++.|+.|.+||+........... .+....+|...|..++|++... +|
T Consensus 178 --~eg~glsWn~~~~g-----------~Lls~~~d~~i~lwdi~~~~~~~~~~~-p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 178 --KEGYGLSWNRQQEG-----------TLLSGSDDHTICLWDINAESKEDKVVD-PKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred --ccccccccccccce-----------eEeeccCCCcEEEEeccccccCCcccc-ceEEeecCCcceehhhccccchhhh
Confidence 01236788877665 799999999999999433222222222 3334489999999999999654 45
Q ss_pred EEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 249 ~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
+++ +|+.+.|||.++...... ....+|.+.|.|++|+|.+..+||+|+.|++|.+||+|+-.. ++.++.+
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~------~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~ 314 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPS------HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEG 314 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCc------ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccC
Confidence 555 899999999995211111 245789999999999998879999999999999999998543 3667666
Q ss_pred ccCCCccccccccccceEEEEECCCCC-EEEE-EcCCeEEEEeccCCCCc----------eeeeeeeccccccccccccC
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGR-HILS-RDYMTLKLWDINMDSGP----------VATFQVHEHLRPKLCDLYEN 395 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~-~l~s-g~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 395 (490)
|. ..|.+|.|||... .||+ |.|+.+.+||+..-++. ...+-.|.+
T Consensus 315 H~------------dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG----------- 371 (422)
T KOG0264|consen 315 HE------------DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG----------- 371 (422)
T ss_pred CC------------cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecC-----------
Confidence 65 8899999999655 4555 46899999999762221 111222222
Q ss_pred CCccceeeEEEcCCCCE-EEEeecCCeEEEEecC
Q 011257 396 DSIFDKFECCLSGDGGR-VATGSYSNLFRVFGCS 428 (490)
Q Consensus 396 ~~~~~v~~~~~s~d~~~-l~s~~~dg~i~vw~~~ 428 (490)
....|.++.|.|+..+ |+++++|+.+.||+..
T Consensus 372 -H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 372 -HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -cccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2222568999998775 6788999999999987
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=208.61 Aligned_cols=376 Identities=13% Similarity=0.121 Sum_probs=252.3
Q ss_pred ccccc-ccEEEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcc------------------
Q 011257 31 EVQEV-DIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF------------------ 90 (490)
Q Consensus 31 ~~~h~-~~V~~~~~s~dg~-~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~------------------ 90 (490)
.++|. ++|++++|..||. .||+|+..|.+.+||++..+.+...+..+...+....|.|.-
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 45664 9999999999997 677788889999999998887665554543333333332211
Q ss_pred ------ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcC--C
Q 011257 91 ------RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--A 162 (490)
Q Consensus 91 ------~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~--~ 162 (490)
+++..-.||. .+..+|+|.- .++..+++++.|++.+.+++......+.... .+.... .
T Consensus 319 ~~dg~pR~LR~R~GHs------------~Pp~~irfy~-~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-~~~~~~~kk 384 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHS------------APPSCIRFYG-SQGHFILSAKQDRTLRSFSVISESQSQELGQ-LHNKKRAKK 384 (910)
T ss_pred CCCCcchheeeccCCC------------CCchheeeec-cCcEEEEecccCcchhhhhhhHHHHhHhhcc-ccccccccc
Confidence 4444445565 8899999984 5688999999999999998764322111111 000000 0
Q ss_pred CCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEec
Q 011257 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242 (490)
Q Consensus 163 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 242 (490)
.+.........|..++|...+.. ...-.+.+.+--.+...+.|+ ......... ......++.....+.+++.+
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~R-----E~~W~Nv~~~h~~~~~~~tW~-~~n~~~G~~-~L~~~~~~~~~~~~~av~vs 457 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAR-----EKEWDNVITAHKGKRSAYTWN-FRNKTSGRH-VLDPKRFKKDDINATAVCVS 457 (910)
T ss_pred ccccchhhhcCCcceeeecccch-----hhhhcceeEEecCcceEEEEe-ccCcccccE-EecCccccccCcceEEEEEe
Confidence 00000001111112233222210 001122344445566778888 222111100 00000012234678899999
Q ss_pred CCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccc
Q 011257 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (490)
Q Consensus 243 ~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (490)
+.|++.+.| +.|.|.+|++.++-.....- .-..|..+|++++....+ +.+++++.+|.+++||......
T Consensus 458 ~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-----~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l---- 527 (910)
T KOG1539|consen 458 FCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-----DSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVL---- 527 (910)
T ss_pred ccCceEEEeccCCeEEEEEcccCeeecccc-----cCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcce----
Confidence 999999999 89999999998543222110 125799999999999988 8999999999999999988653
Q ss_pred cceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccc
Q 011257 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
+..+... ..+..+..+.....++.+ +|-.|+++|..+ .+.++.+.+|...
T Consensus 528 ~~~l~l~-------------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nr--------------- 578 (910)
T KOG1539|consen 528 KKSLRLG-------------SSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNR--------------- 578 (910)
T ss_pred eeeeccC-------------CCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhhccccc---------------
Confidence 2344332 467778888777777776 569999999998 8899999999987
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccC-cceecC
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRG 468 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~-~~~~~~ 468 (490)
|++++|||||++|++++.|++||+||+.++.+ +-.+. -..++..+.|||.|...+.+..+ .+.+.+
T Consensus 579 itd~~FS~DgrWlisasmD~tIr~wDlpt~~l-ID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 579 ITDMTFSPDGRWLISASMDSTIRTWDLPTGTL-IDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred eeeeEeCCCCcEEEEeecCCcEEEEeccCcce-eeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 56999999999999999999999999999987 34443 35789999999999998888766 344433
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.6e-26 Score=206.02 Aligned_cols=283 Identities=20% Similarity=0.309 Sum_probs=216.2
Q ss_pred cccccEE---EEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 33 QEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 33 ~h~~~V~---~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
+|...|. .+..+. .++||+||+.||.|++|+....... |+-.+...++.|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs-------- 73 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS-------- 73 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH--------
Confidence 5666666 556654 5778999999999999998754421 2233567788888
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
+.|+.+..+ .+++-|++++.|-+|++|+...+..
T Consensus 74 ----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~---------------------------------------- 107 (735)
T KOG0308|consen 74 ----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT---------------------------------------- 107 (735)
T ss_pred ----hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc----------------------------------------
Confidence 889999988 4677899999999999999765420
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEe-cCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
.|..+ +..|.+.|.++++ .++...+|+| -|+.|.+||+++...
T Consensus 108 ----------------------------------~c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 108 ----------------------------------FCMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred ----------------------------------hhHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence 01111 2678899999999 7788888888 799999999995532
Q ss_pred -eeeeee-cCCCccC-CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccc
Q 011257 267 -SFNIVD-VKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 267 -~~~~~~-~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
.....+ .....+. ++...|.+++.++.| ..|++|+..+.+++||.++++.. ..+ .+|...
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~ki----mkL------------rGHTdN 215 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKI----MKL------------RGHTDN 215 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccce----eee------------eccccc
Confidence 111111 1111333 788999999999999 99999999999999999997643 333 345589
Q ss_pred eEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 344 ISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
|..+..++||..++++ +||+|++||+.. .+++.++..|... ||++..+|+=..+.+|+.||.|
T Consensus 216 Vr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 216 VRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred eEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCCcE
Confidence 9999999999999997 689999999996 8999999999876 6899999999999999999999
Q ss_pred EEEecCCCceeeeEeccCCCceEEEEEccCCCC
Q 011257 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 455 (490)
..=|+++... ...+-....||..+..+-+.+.
T Consensus 280 ~~Tdl~n~~~-~tlick~daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 280 YRTDLRNPAK-STLICKEDAPVLKLHLHEHDNS 311 (735)
T ss_pred EecccCCchh-heEeecCCCchhhhhhccccCC
Confidence 9999998543 2233333455666655543333
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=210.33 Aligned_cols=298 Identities=14% Similarity=0.186 Sum_probs=195.1
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCC--cCCCCCCccccccccCceEEec---cCCc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFGSHVSAIPKSYMA---NGGC 185 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~---~g~~ 185 (490)
|.++|.++.|++ +|.|||+|+.|+.|+||.+...+............ ....++.+. .+.-++ .++.
T Consensus 266 h~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~-------p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 266 HKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIE-------PSTSSEEKISSRT 336 (712)
T ss_pred cCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccC-------ccccccccccccc
Confidence 449999999996 88999999999999999998754322111110000 000000000 000000 0000
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
-..-.+.....+.+.+ .-.....++...+ .||.+.|.++.|+.++ +|+++ .|.+|+||++. .
T Consensus 337 ----------s~~~~~~~s~~~~~p~----~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-~ 399 (712)
T KOG0283|consen 337 ----------SSSRKGSQSPCVLLPL----KAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-R 399 (712)
T ss_pred ----------cccccccCCccccCCC----ccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCC-C
Confidence 0111122222222211 1112223344444 8999999999999876 55565 89999999998 6
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+.++.+ -.|...|+|++|+|...++|++|+-||.+|||++...++. .+..-. .-|
T Consensus 400 ~~CL~~--------F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-----~W~Dl~------------~lI 454 (712)
T KOG0283|consen 400 KECLKV--------FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-----DWNDLR------------DLI 454 (712)
T ss_pred cceeeE--------EecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-----eehhhh------------hhh
Confidence 666654 3599999999999987799999999999999999987643 222221 579
Q ss_pred EEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC-CEEEEeecCCeE
Q 011257 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 422 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i 422 (490)
++++|.|||++.+.|+. |.+++|+... .+.......+.....+. ..- .|+.+.|.|.. ..|++.+.|..|
T Consensus 455 TAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~------~~~-rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK------QGK-RITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred eeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccc------cCc-eeeeeEecCCCCCeEEEecCCCce
Confidence 99999999999999975 9999999984 55555544433211100 011 37799998743 357777899999
Q ss_pred EEEecCCCceeeeEeccCCC--ceEEEEEccCCCCCCCCccCcceecC
Q 011257 423 RVFGCSEGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
||||.+.... +..+++... .-....|+.||++...++.+...+.+
T Consensus 527 RI~d~~~~~l-v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 527 RIYDGRDKDL-VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred EEEeccchhh-hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 9999976655 566776542 33456899999999988866554443
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=185.35 Aligned_cols=245 Identities=13% Similarity=0.234 Sum_probs=195.8
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
-+.+|++.|.+..++.+...-|+++.|-+.+|||.-++..+ ..|
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel-----------------------hsf------------- 97 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL-----------------------HSF------------- 97 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh-----------------------hhh-------------
Confidence 35679999999999999989999999999999998877632 222
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+|.--|.+++|+ .+.++|++|+.+..+|+||++..+...
T Consensus 98 ~hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~App--------------------------------------- 136 (334)
T KOG0278|consen 98 EHKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAPP--------------------------------------- 136 (334)
T ss_pred hhhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCCc---------------------------------------
Confidence 222559999998 466799999999999999987654110
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+. ..+|+..|..+-|....+.++++ +|++|++||.++.....
T Consensus 137 ------------------------------------~E-~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 137 ------------------------------------KE-ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ 179 (334)
T ss_pred ------------------------------------hh-hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE
Confidence 01 26888999999999888888887 99999999999665443
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
. + ....+|+++.++++| ++ ++-...+.|.+||..+-.+ ++.++.+ ..|.+.+
T Consensus 180 s-L--------~~~s~VtSlEvs~dG-~i-lTia~gssV~Fwdaksf~~----lKs~k~P-------------~nV~SAS 231 (334)
T KOG0278|consen 180 S-L--------EFNSPVTSLEVSQDG-RI-LTIAYGSSVKFWDAKSFGL----LKSYKMP-------------CNVESAS 231 (334)
T ss_pred E-E--------ecCCCCcceeeccCC-CE-EEEecCceeEEeccccccc----eeeccCc-------------ccccccc
Confidence 2 2 236779999999999 54 4556777899999988654 3555444 5689999
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccCCCCceeee-eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
.+|+...+++| .|..++.||..+ +..+..+ ++|.+. |.++.|+|||...++|+.||+|++|.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~T-geEi~~~nkgh~gp---------------VhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNT-GEEIGSYNKGHFGP---------------VHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccC-CceeeecccCCCCc---------------eEEEEECCCCceeeccCCCceEEEEE
Confidence 99998888887 569999999998 7777765 777766 67999999999999999999999999
Q ss_pred cCCCce
Q 011257 427 CSEGSA 432 (490)
Q Consensus 427 ~~~~~~ 432 (490)
...++.
T Consensus 296 t~~~~~ 301 (334)
T KOG0278|consen 296 TTPGKT 301 (334)
T ss_pred ecCCCc
Confidence 987754
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=194.76 Aligned_cols=242 Identities=14% Similarity=0.232 Sum_probs=190.9
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.++.|++++|-.||++||+|+..|.|+|||..+.. .+..+.+|+ .
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----------------------iLR~~~ah~------------a 111 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----------------------ILRQLYAHQ------------A 111 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-----------------------HHHHHhhcc------------C
Confidence 46789999999999999999999999999954322 367789999 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
+|..+.|+| .++..|++|+.|+.+++||+.+... ......+. ....+.+|+|-...
T Consensus 112 pv~~~~f~~-~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~ht-------------DYVR~g~~~~~~~h-------- 167 (487)
T KOG0310|consen 112 PVHVTKFSP-QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHT-------------DYVRCGDISPANDH-------- 167 (487)
T ss_pred ceeEEEecc-cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCc-------------ceeEeeccccCCCe--------
Confidence 899999998 5568899999999999999999875 22222221 11225666665442
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeec
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
++++|+-||.|++|| .... . ... ..-.|..+|.++.+-|.|..++++....+++||+-++++...
T Consensus 168 ---ivvtGsYDg~vrl~D-tR~~-~----~~v--~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~---- 232 (487)
T KOG0310|consen 168 ---IVVTGSYDGKVRLWD-TRSL-T----SRV--VELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT---- 232 (487)
T ss_pred ---EEEecCCCceEEEEE-eccC-C----cee--EEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh----
Confidence 789999999999999 2221 1 111 225788999999999999999999889999999987776653
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.+..|...|+|+++..++ ..|++|+-|+.+++||+.+.+.. ..+.-. ++|.+++.+|++
T Consensus 233 ---~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kvv----~s~~~~-------------~pvLsiavs~dd 291 (487)
T KOG0310|consen 233 ---SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKVV----HSWKYP-------------GPVLSIAVSPDD 291 (487)
T ss_pred ---hhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEEE----Eeeecc-------------cceeeEEecCCC
Confidence 345599999999999998 99999999999999997776542 444433 789999999999
Q ss_pred CEEEEE-cCCeEEEEecc
Q 011257 354 RHILSR-DYMTLKLWDIN 370 (490)
Q Consensus 354 ~~l~sg-~d~~i~iwd~~ 370 (490)
+.++.| ++|.+.+-+..
T Consensus 292 ~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ceEEEecccceeeeehhh
Confidence 999998 67877766443
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.2e-24 Score=199.02 Aligned_cols=277 Identities=15% Similarity=0.217 Sum_probs=206.6
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
+..+|...|..+++.+.. .+++++.||++++|+-..++.. ....+.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~--------- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK--------- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence 356899999999987655 8999999999999997655522 123356665
Q ss_pred eeccceeE-EEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 110 ~~~~~V~~-v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
+-|.. +++.+ .++.++++|+.|.+|.+|...+.....++..+... +. +++...
T Consensus 58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn--------VC-------~ls~~~------- 111 (745)
T KOG0301|consen 58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN--------VC-------SLSIGE------- 111 (745)
T ss_pred ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchhhhhccccc--------ee-------eeecCC-------
Confidence 55666 88876 55667999999999999999987765555444321 10 111111
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
...+++|+.|.++++|.+ .++... +.+|+..|++++.-|++ .+++| .|.+|++|.-. ..
T Consensus 112 ------~~~~iSgSWD~TakvW~~---------~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~ 171 (745)
T KOG0301|consen 112 ------DGTLISGSWDSTAKVWRI---------GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TL 171 (745)
T ss_pred ------cCceEecccccceEEecc---------hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---ch
Confidence 225799999999999972 112222 48999999999999988 77777 89999999764 23
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
.+ ++.+|.+.|+.+++-|++ .|++++.||.|++|++. ++. +..+.+| +.-+.++
T Consensus 172 l~-------tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge~----l~~~~gh------------tn~vYsi 225 (745)
T KOG0301|consen 172 LK-------TFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GEV----LLEMHGH------------TNFVYSI 225 (745)
T ss_pred hh-------hhccchhheeeeEEecCC--CeEeecCCceEEEEecc-Cce----eeeeecc------------ceEEEEE
Confidence 32 578999999999999985 79999999999999994 443 3454444 4889999
Q ss_pred EECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 348 KFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 348 ~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+...++..+++ |.|++++||+.. .+.+.+...... ||++++-++|. |++|+.||.||||.
T Consensus 226 s~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~lPtts---------------iWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 226 SMALSDGLIVSTGEDRTLRIWKKD---ECVQVITLPTTS---------------IWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred EecCCCCeEEEecCCceEEEeecC---ceEEEEecCccc---------------eEEEEEeeCCC-EEEeccCceEEEEE
Confidence 96666677776 578999999974 566666544322 67899888887 56788899999998
Q ss_pred cC
Q 011257 427 CS 428 (490)
Q Consensus 427 ~~ 428 (490)
..
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 76
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.6e-24 Score=167.38 Aligned_cols=259 Identities=14% Similarity=0.166 Sum_probs=176.9
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|++.|+|.+|||+|+++|+|+.|.+|++...+...+. ..+|+.||. .|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~-------------------------~~g~dle~n-----mh 135 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCN-------------------------ATGHDLEFN-----MH 135 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEeccccccc-------------------------ccCcceeee-----ec
Confidence 358999999999999999999999999999877654422 334442211 23
Q ss_pred ccceeEEEEee--cCCCcEEEEE-eCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 112 EEKINKIRWCQ--SANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 112 ~~~V~~v~~~p--~~~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
++.|..++|.- ...+..|+++ ..|..|.+=|-..++..+....+.. -+ ..-++-+|.
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg--------hi--------lalyswn~~---- 195 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG--------HI--------LALYSWNGA---- 195 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc--------cE--------EEEEEecCc----
Confidence 48899999984 3335566664 4566777777776654333222210 00 111233333
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
++++|+.|.+|++||+....-........+.- .-.+..|.+++..|.|++|++| .|....+||++ +++.
T Consensus 196 --------m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-glessavaav~vdpsgrll~sg~~dssc~lydir-g~r~ 265 (350)
T KOG0641|consen 196 --------MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-GLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR-GGRM 265 (350)
T ss_pred --------EEEccCCCceEEEEeeeccceeeeccCcccCC-CcccceeEEEEECCCcceeeeccCCCceEEEEee-CCce
Confidence 89999999999999932221111111100000 0123578899999999999999 89999999999 5555
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
++ .+..|...|.++.|+|.. .++++|+.|..|++-|+...-...-++. +..+|...+..+
T Consensus 266 iq-------~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~------------vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 266 IQ-------RFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIM------------VVAEHKDKAIQC 325 (350)
T ss_pred ee-------eeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceE------------EEEeccCceEEE
Confidence 44 467899999999999998 9999999999999999875421111122 234455788899
Q ss_pred EECCCCCEEEEE-cCCeEEEEecc
Q 011257 348 KFARNGRHILSR-DYMTLKLWDIN 370 (490)
Q Consensus 348 ~~sp~g~~l~sg-~d~~i~iwd~~ 370 (490)
.|+|..--+++. .|.++.+|-+.
T Consensus 326 rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EecCccceeeeccCcceEEEeccC
Confidence 999976666654 57999999764
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=195.86 Aligned_cols=261 Identities=18% Similarity=0.226 Sum_probs=190.9
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcc-ccccccccCCcccceeeeeeec
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF-RYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
....|.+++||+.|..|++.+.....+|+|....+.....+.. .| +-+..-.||.
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD------------QYI~Dm~nTKGHi------------ 268 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD------------QYIRDMYNTKGHI------------ 268 (641)
T ss_pred cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccc------------hhhhhhhccCCce------------
Confidence 3557999999999998888888889999998866543111111 11 1123356787
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..+++.+|+|.. ...|++++.||++|+||+...+ ..+++....
T Consensus 269 a~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~----------------------------------- 312 (641)
T KOG0772|consen 269 AELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP----------------------------------- 312 (641)
T ss_pred eeeeccccccCc-ccceEEecCCCcEEEEecCCchhheeEEeecc-----------------------------------
Confidence 789999999955 4679999999999999998754 122211110
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
..+..-.+..++|+++++++|+| .||.|.+|+..........
T Consensus 313 -------------------------------------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~ 355 (641)
T KOG0772|consen 313 -------------------------------------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM 355 (641)
T ss_pred -------------------------------------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce
Confidence 01222567889999999999998 9999999997533221111
Q ss_pred eecCCCccCCCCC--ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 271 VDVKPANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 271 ~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
. .-..|.. .|+|+.|+++| ++|++-+.|+++++||++..+.+ +..+.+-..+ .+-+.++
T Consensus 356 ~-----vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kkp---L~~~tgL~t~----------~~~tdc~ 416 (641)
T KOG0772|consen 356 K-----VKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKKP---LNVRTGLPTP----------FPGTDCC 416 (641)
T ss_pred E-----eeeccCCCCceeEEEecccc-chhhhccCCCceeeeeccccccc---hhhhcCCCcc----------CCCCccc
Confidence 0 1245665 89999999999 99999999999999999986543 4444432211 3467899
Q ss_pred ECCCCCEEEEEc-----C--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCe
Q 011257 349 FARNGRHILSRD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (490)
Q Consensus 349 ~sp~g~~l~sg~-----d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 421 (490)
|||+.++|++|+ . |.+.+||..+ -..+..+...... |..+.|+|.=+.|..|+.||.
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f~d~~t-~d~v~ki~i~~aS---------------vv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFFFDRMT-LDTVYKIDISTAS---------------VVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEEEeccc-eeeEEEecCCCce---------------EEEEeecchhhheeeecCCCc
Confidence 999999999973 2 7899999987 6777766655333 558999998888999999999
Q ss_pred EEEEe
Q 011257 422 FRVFG 426 (490)
Q Consensus 422 i~vw~ 426 (490)
++||=
T Consensus 481 ~~vyY 485 (641)
T KOG0772|consen 481 AHVYY 485 (641)
T ss_pred eEEEE
Confidence 99874
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.7e-26 Score=208.73 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=193.0
Q ss_pred EEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecccee
Q 011257 38 ISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (490)
Q Consensus 38 V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 116 (490)
+..|.|+. +.++|||++..|.|.+||+.... ..+.+..|..|+ ..|+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~~ 137 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSAN 137 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------ccee
Confidence 45577775 56799999999999999998621 112356788898 8899
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
++.|++.. ..+|++|+.||+|++||++..+-+..+
T Consensus 138 ~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~-------------------------------------------- 172 (839)
T KOG0269|consen 138 KLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTF-------------------------------------------- 172 (839)
T ss_pred eeeeccCC-ccEEEecCCCceEEEEeeecccccccc--------------------------------------------
Confidence 99999854 579999999999999999876533211
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeeeeecC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
.+....|++++|+|. +..|+++ +.|.+++||++...++..
T Consensus 173 ---------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----- 214 (839)
T KOG0269|consen 173 ---------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----- 214 (839)
T ss_pred ---------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH-----
Confidence 223367888999985 7788888 899999999998777654
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~ 354 (490)
.+..|.++|.++.|+|++ .+||||+.|+.|+|||+.+++.. +..++..- .++.+|+|-|+.+
T Consensus 215 --k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~--~~~tInTi-------------apv~rVkWRP~~~ 276 (839)
T KOG0269|consen 215 --KLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK--PKHTINTI-------------APVGRVKWRPARS 276 (839)
T ss_pred --HhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCcc--ceeEEeec-------------ceeeeeeeccCcc
Confidence 578999999999999998 99999999999999999876532 22333322 6899999999766
Q ss_pred EE-EEE---cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCEEEEeecCCeEEEEecCC
Q 011257 355 HI-LSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 355 ~l-~sg---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~~~~ 429 (490)
+. +++ .|-.|+|||++.+--|..++..|...+ +.++|.. |...|.+++.||+|..-..++
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v---------------t~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV---------------TGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccc---------------cceeccCCCceeeEeecCccHHHHhhhhc
Confidence 54 444 368999999998888999999998874 4788865 456788999999887655554
Q ss_pred C
Q 011257 430 G 430 (490)
Q Consensus 430 ~ 430 (490)
+
T Consensus 342 a 342 (839)
T KOG0269|consen 342 A 342 (839)
T ss_pred c
Confidence 4
No 104
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=189.78 Aligned_cols=292 Identities=17% Similarity=0.253 Sum_probs=207.7
Q ss_pred cccccEEEEEECCCC--CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 33 QEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg--~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
-|.++|++++|+|.. +++|+|+..|.|-+||+.+.+ |++.-+..+..|.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------------~d~d~v~~f~~hs---------- 234 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------------KDKDGVYLFTPHS---------- 234 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------------CccCceEEeccCC----------
Confidence 478999999999954 589999999999999996443 2333345577887
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
.+|.++.|+|. +...+++.+.||+|++-|+++.....+....
T Consensus 235 --~~Vs~l~F~P~-n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~----------------------------------- 276 (498)
T KOG4328|consen 235 --GPVSGLKFSPA-NTSQIYSSSYDGTIRLQDFEGNISEEVLSLD----------------------------------- 276 (498)
T ss_pred --ccccceEecCC-ChhheeeeccCceeeeeeecchhhHHHhhcC-----------------------------------
Confidence 88999999994 4578999999999999999876432211110
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.....+.++.|+.+...++.+ .=|...+||+++.+..+.
T Consensus 277 ----------------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 277 ----------------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred ----------------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence 001234567788877777777 666999999998776554
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+.-|...|++++++|..+.+|||++.|++.+|||++.-.....++ --...|...|.+..|
T Consensus 317 -------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~------------lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 317 -------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF------------LSTLPHRRSVNSAYF 377 (498)
T ss_pred -------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcc------------eecccccceeeeeEE
Confidence 3456788999999999998999999999999999998743221110 112346689999999
Q ss_pred CCCCCEEEE-EcCCeEEEEecc---CCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 350 ARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 350 sp~g~~l~s-g~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
||.+-.|++ +.|..|+|||.. ....++.++......-. ....+...|.|+..++++|-.-..|-|+
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R----------wlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR----------WLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc----------cccchhheeCCCccEEEEeccCcceeEE
Confidence 997666766 568999999983 22444445443222111 1113468899999999999999999999
Q ss_pred ecCCCceeeeEec-cCCCceEE-EEEccCCCCCCCCcc
Q 011257 426 GCSEGSAESTTLE-ASKNPMRR-QVQTPSRPSRPLGSL 461 (490)
Q Consensus 426 ~~~~~~~~~~~~~-~~~~~v~~-~~~sp~~~~~~~~~~ 461 (490)
|-..++.+ ..+. .....|.+ ..|+|-+...+.++.
T Consensus 448 ~~~~~q~v-~el~~P~~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 448 DGNGGQMV-CELHDPESSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred cCCCCEEe-eeccCccccccccceeecccccceeccCC
Confidence 98877643 3332 22224444 589998875554443
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=5.5e-25 Score=191.83 Aligned_cols=275 Identities=17% Similarity=0.240 Sum_probs=195.2
Q ss_pred cccccccEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+.|.+.|..+..-|. ...+|+++..+.|.|||+.+......... .+.| -..+.+|+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~P----dl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRP----DLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCC----ceEEEeec---------
Confidence 4679999999999995 45788888999999999986553211000 1222 34577887
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEE-----EEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-----KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
+.-.+++|++... ..+++++.|++|++||+...... ....++.+. .....++|++-..
T Consensus 178 ---~eg~glsWn~~~~-g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-------------~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQE-GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-------------DVVEDVAWHPLHE 240 (422)
T ss_pred ---ccccccccccccc-eeEeeccCCCcEEEEeccccccCCccccceEEeecCC-------------cceehhhccccch
Confidence 4467799998554 47999999999999999864321 111111110 1112556666555
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLE 262 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~ 262 (490)
+++.+.+.|+.+.||| .+. . ..++.+. ..+|+..|.|++|+|- +.+||+| .|++|++||++
T Consensus 241 -----------~lF~sv~dd~~L~iwD-~R~-~---~~~~~~~-~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR 303 (422)
T KOG0264|consen 241 -----------DLFGSVGDDGKLMIWD-TRS-N---TSKPSHS-VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR 303 (422)
T ss_pred -----------hhheeecCCCeEEEEE-cCC-C---CCCCccc-ccccCCceeEEEeCCCCCceEEeccCCCcEEEeech
Confidence 3788999999999999 322 1 1222222 3799999999999995 5567777 79999999999
Q ss_pred CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
.-.+.+. .+.+|...|.++.|+|+....||+++.|+++.+||+..-.... .........+.....-.||..
T Consensus 304 nL~~~lh-------~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq--~~eda~dgppEllF~HgGH~~ 374 (422)
T KOG0264|consen 304 NLNKPLH-------TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ--SPEDAEDGPPELLFIHGGHTA 374 (422)
T ss_pred hcccCce-------eccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc--ChhhhccCCcceeEEecCccc
Confidence 7766544 6799999999999999988999999999999999998632210 001111111222234467999
Q ss_pred ceEEEEECCCCCEEEEE--cCCeEEEEecc
Q 011257 343 SISDIKFARNGRHILSR--DYMTLKLWDIN 370 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg--~d~~i~iwd~~ 370 (490)
.|..+.|+|+..+++++ .|+.+.||++.
T Consensus 375 kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 375 KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999999988877764 56999999986
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.2e-24 Score=200.31 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=210.3
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|+..-+.++|.|+|++|.+++.||.|++|+....... | ..+.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P-----~ti~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------P-----ETIDISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------C-----chhhccC-----------
Confidence 468889999999999999999999999999997655211 1 1111133
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|.+++-. +.+|++++.+++|.+|.+..++...++
T Consensus 57 -~~v~~ia~~----s~~f~~~s~~~tv~~y~fps~~~~~iL--------------------------------------- 92 (933)
T KOG1274|consen 57 -ELVSSIACY----SNHFLTGSEQNTVLRYKFPSGEEDTIL--------------------------------------- 92 (933)
T ss_pred -ceeEEEeec----ccceEEeeccceEEEeeCCCCCcccee---------------------------------------
Confidence 668888764 459999999999999998776532210
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
...+.++++++|+-+|+++|.| +|-.|++-+.....+..
T Consensus 93 --------------------------------------~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-- 132 (933)
T KOG1274|consen 93 --------------------------------------ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-- 132 (933)
T ss_pred --------------------------------------eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--
Confidence 1222577899999999999999 89999999998666554
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.+.+|.++|.++.|+|.+ .+||+.+-||.|++||+.++... +++.+-.... -......+..++|+
T Consensus 133 ------~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~----~tl~~v~k~n----~~~~s~i~~~~aW~ 197 (933)
T KOG1274|consen 133 ------VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILS----KTLTGVDKDN----EFILSRICTRLAWH 197 (933)
T ss_pred ------eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhh----hhcccCCccc----cccccceeeeeeec
Confidence 468999999999999999 99999999999999999987642 3333211000 00012567889999
Q ss_pred CC-CCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 351 RN-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 351 p~-g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|+ |.+++.+.|+.|++|+... ......+........ +..+.|+|+|+|||+++.||.|.|||+++
T Consensus 198 Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 198 PKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 98 5555557899999999986 777776665443221 34899999999999999999999999997
Q ss_pred CceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
-+. ..-...|.+++|.|+.+......
T Consensus 264 ~~~-----~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 264 HER-----HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred chh-----ccccceeEEEecCCCCCeeEEEe
Confidence 322 33357899999999988665543
No 107
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=191.41 Aligned_cols=241 Identities=17% Similarity=0.312 Sum_probs=185.9
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+-.++|+++.|.++++++++++.|+.+++|++...+ ...++.||+
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----------------------~~~TLsGHt------------ 261 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----------------------LRHTLSGHT------------ 261 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchh-----------------------hhhhhcccc------------
Confidence 446789999999999999999999999999998655 568899999
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|+++.|.... ..+++|+.|.+|++||+....+...
T Consensus 262 dkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt----------------------------------------- 298 (459)
T KOG0288|consen 262 DKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKT----------------------------------------- 298 (459)
T ss_pred cceeeehhhccc--cceeeccccchhhhhhhhhhheecc-----------------------------------------
Confidence 899999998533 3499999999999999988554331
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++.+ ..+..|..+ ...+++| .|+.|++||.+.......
T Consensus 299 -----~l~~--------------------------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s-- 337 (459)
T KOG0288|consen 299 -----VLPG--------------------------------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS-- 337 (459)
T ss_pred -----cccc--------------------------------ccccceEec--ceeeeecccccceEEEeccCCceeeE--
Confidence 1111 112233332 4457788 899999999986554432
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+ ..+.|+++..++++ ..+++++.|.++.+.|+++.+.+ .++.... +..+ ...+.+.|||
T Consensus 338 ------v~-~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~----~~~sA~g------~k~a--sDwtrvvfSp 397 (459)
T KOG0288|consen 338 ------VP-LGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIR----QTFSAEG------FKCA--SDWTRVVFSP 397 (459)
T ss_pred ------ee-cCcceeeEeeccCC-eEEeeecCCCceeeeecccccEE----EEeeccc------cccc--cccceeEECC
Confidence 22 24589999999999 88888899999999999998754 3333221 1111 2378899999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
++.|+++|+ ||.|+||++.+ +++...+....... .|++++|+|.|..|++++.++.+.+|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v~t-gKlE~~l~~s~s~~-------------aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFT-GKLEKVLSLSTSNA-------------AITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccC-ceEEEEeccCCCCc-------------ceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999985 69999999997 88877776554321 267999999999999999999999993
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.7e-23 Score=188.79 Aligned_cols=293 Identities=11% Similarity=0.105 Sum_probs=193.8
Q ss_pred CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCC
Q 011257 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (490)
Q Consensus 47 g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~ 126 (490)
++.+++++.|+.|++||..+++. ...+..+ ..+.+++|+| ++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~-------------~~~~~l~~~~--dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVG-------------QRPRGITLSK--DG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECC-------------CCCCceEECC--CC
Confidence 35788999999999999877652 2334433 2366789986 55
Q ss_pred cEE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 127 ~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
..+ ++++.++.|++||+.+++......... .+..++|+|+++. +++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~-----------l~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGP----------------DPELFALHPNGKI-----------LYIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCC----------------CccEEEECCCCCE-----------EEEEcCCCC
Confidence 555 567789999999999887654332111 1125788999883 234556789
Q ss_pred cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC-CcEEEEEcCCCCceeeeeecCCCccCCCCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 283 (490)
.+++||+ .. ......+ .+...+.+++|+|++++++++ .+ ..+.+||.++.. ..... ....
T Consensus 96 ~l~~~d~-~~------~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~--------~~~~ 157 (300)
T TIGR03866 96 LVTVIDI-ET------RKVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNV--------LVDQ 157 (300)
T ss_pred eEEEEEC-CC------CeEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEE--------EcCC
Confidence 9999993 22 1122222 112346789999999999988 54 457778987433 22211 1123
Q ss_pred ceEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE--c
Q 011257 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D 360 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~ 360 (490)
.+..++|+|++ ..| +++..++.|++||+.+++.. ..+..+..... . .......++|+|++++++.+ +
T Consensus 158 ~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~~~----~-~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 158 RPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPGVH----P-EAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred CccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccccc----c-ccCCccceEECCCCCEEEEEcCC
Confidence 45679999999 666 45556999999999987642 22221110000 0 00123568899999986553 4
Q ss_pred CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCceeeeEecc
Q 011257 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 361 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
++.+.+||+++ ++.+..+.... . +++++|+|+|++|++++ .+|.|++||+.+++. +..++.
T Consensus 228 ~~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~-~~~~~~ 289 (300)
T TIGR03866 228 ANRVAVVDAKT-YEVLDYLLVGQ-R---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV-IKSIKV 289 (300)
T ss_pred CCeEEEEECCC-CcEEEEEEeCC-C---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCCcE-EEEEEc
Confidence 57899999986 66555443221 1 34899999999998764 689999999999987 566766
Q ss_pred CCCceEEEEEcc
Q 011257 440 SKNPMRRQVQTP 451 (490)
Q Consensus 440 ~~~~v~~~~~sp 451 (490)
. ...+.++++|
T Consensus 290 ~-~~~~~~~~~~ 300 (300)
T TIGR03866 290 G-RLPWGVVVRP 300 (300)
T ss_pred c-cccceeEeCC
Confidence 5 4558888876
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1e-24 Score=209.57 Aligned_cols=269 Identities=16% Similarity=0.273 Sum_probs=190.7
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|.+.|+|+.|+|||+|||+|+.|+.|.||+..... ....... .....-.-.++....+.+|.
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~-~~~~fgs----~g~~~~vE~wk~~~~l~~H~----------- 129 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIG-SGTVFGS----TGGAKNVESWKVVSILRGHD----------- 129 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccC-Ccccccc----cccccccceeeEEEEEecCC-----------
Confidence 4699999999999999999999999999999988411 0000000 00001111345566678888
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|..++|+| ++.+|++++.|++|.+||..+.+...+
T Consensus 130 -~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~v---------------------------------------- 166 (942)
T KOG0973|consen 130 -SDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKV---------------------------------------- 166 (942)
T ss_pred -CccceeccCC--CccEEEEecccceEEEEccccceeeee----------------------------------------
Confidence 8899999997 678999999999999999887643221
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
+.+|...|..+.|.|-|++||+- +|++|++|+...-+ ..+.
T Consensus 167 -------------------------------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-i~k~ 208 (942)
T KOG0973|consen 167 -------------------------------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-IEKS 208 (942)
T ss_pred -------------------------------------eecccccccceEECCccCeeeeecCCceEEEEEcccce-eeEe
Confidence 36888899999999999999997 99999999976322 2222
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
+. +|-.-......+..+.|+||| .+|++... -.++.|.+-.+.+ ....+-||..++.+
T Consensus 209 It-~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk----------------~~~~LvGH~~p~ev 270 (942)
T KOG0973|consen 209 IT-KPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK----------------VDKDLVGHSAPVEV 270 (942)
T ss_pred ec-cchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce----------------eeeeeecCCCceEE
Confidence 21 111112235567899999999 89888754 2345555443322 11235566699999
Q ss_pred EEECCC------C---------C--EEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 347 IKFARN------G---------R--HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 347 l~~sp~------g---------~--~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
++|+|. . . .+|+|+ |++|.||.... .+|+.....-... .|.+++|+|
T Consensus 271 vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~--------------SI~DmsWsp 335 (942)
T KOG0973|consen 271 VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNK--------------SIVDMSWSP 335 (942)
T ss_pred EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcC--------------ceeeeeEcC
Confidence 999981 1 1 344564 79999999976 6666544322211 156999999
Q ss_pred CCCEEEEeecCCeEEEEecCCC
Q 011257 409 DGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
||..|+.+|.||+|.+..++..
T Consensus 336 dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 336 DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCeEEEEecCCeEEEEEcchH
Confidence 9999999999999999998854
No 110
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.4e-23 Score=186.91 Aligned_cols=352 Identities=14% Similarity=0.161 Sum_probs=228.2
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
..+|+|++|+.+.+.||.+-.||.|.||++..+- -....+.+++ +..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------------~~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------------FLEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------------eeeEEEecCC-----------CCc
Confidence 5789999999999999999999999999987543 2345566665 278
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
|-+++|+ ++.+|++.+.+|.|.-||+.+.+.+....... +.+. +++.+|.+
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~g--------g~IW-------siai~p~~----------- 122 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNG--------GAIW-------SIAINPEN----------- 122 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecCCC--------ccee-------EEEeCCcc-----------
Confidence 9999998 46689999999999999999987665433221 1222 34444444
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
+.+++|+.||.+..++ .+.+.. .....+...++.|.+++|+|++..+++| .||.|++||....... .+...
T Consensus 123 -~~l~IgcddGvl~~~s--~~p~~I----~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~-~~~~~ 194 (691)
T KOG2048|consen 123 -TILAIGCDDGVLYDFS--IGPDKI----TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTL-HIITM 194 (691)
T ss_pred -ceEEeecCCceEEEEe--cCCceE----EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceE-EEeee
Confidence 4899999999666655 111111 1111124445889999999999999999 8999999999855443 33333
Q ss_pred CCCccCC-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccc-------------------------------
Q 011257 274 KPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH------------------------------- 321 (490)
Q Consensus 274 ~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------------------------- 321 (490)
+...+.. ...-|+++.|-.++ .|++|...|+|.+||...+.+....
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 3223332 44567888888765 8889999999999987765322100
Q ss_pred ---------------------------------------------cce--eccccCCC----------------------
Q 011257 322 ---------------------------------------------SKL--FEEQEAPG---------------------- 332 (490)
Q Consensus 322 ---------------------------------------------~~~--~~~~~~~~---------------------- 332 (490)
+.. +..|..+.
T Consensus 273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~ 352 (691)
T KOG2048|consen 273 SLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKA 352 (691)
T ss_pred EecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEecc
Confidence 000 00000000
Q ss_pred ------c--ccccc-------------ccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeee------------
Q 011257 333 ------T--RSFFT-------------EIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF------------ 379 (490)
Q Consensus 333 ------~--~~~~~-------------~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~------------ 379 (490)
. ....+ .-...|.+.+.||+|++|+.+.-..++||.++... .+...
T Consensus 353 h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a 431 (691)
T KOG2048|consen 353 HGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPLALLDA 431 (691)
T ss_pred ccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchhhhccc
Confidence 0 00001 01235788999999999999876678888776411 11110
Q ss_pred -------------------------eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceee
Q 011257 380 -------------------------QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (490)
Q Consensus 380 -------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~ 434 (490)
.........+..+........|..+..||+|+|||+.+.+|.|.+|++++++..
T Consensus 432 ~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~- 510 (691)
T KOG2048|consen 432 SAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESH- 510 (691)
T ss_pred eeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceee-
Confidence 000000000111111112224778999999999999999999999999988652
Q ss_pred eEeccCCCceEEEEEccCCCCCCCCc
Q 011257 435 TTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 435 ~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
.........|+.++|+|........+
T Consensus 511 ~l~~rln~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 511 LLKVRLNIDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred cchhccCcceeeeeccccccCcEEEE
Confidence 22223447899999998766555443
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=179.99 Aligned_cols=306 Identities=12% Similarity=0.133 Sum_probs=210.1
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
+..+.+|. +.|++++|+ +||.+|++++.|++|++|+++....+...-+. ..-...
T Consensus 79 ~~~LKgH~------------~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-----------~nve~d 133 (420)
T KOG2096|consen 79 VSVLKGHK------------KEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKEHRCIR-----------QNVEYD 133 (420)
T ss_pred hhhhhccC------------CceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhhhhHhh-----------ccccCC
Confidence 45688898 889999998 58999999999999999999874322211111 111123
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceee----eeccccccceeEEEecCCCCEE
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR----IYAHAHDYHINSISNNSDGETF 248 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l 248 (490)
.|..+.|+||.+. .++..-...++++|.+....++........ .+...|...+..+-....++++
T Consensus 134 hpT~V~FapDc~s-----------~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 134 HPTRVVFAPDCKS-----------VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CceEEEECCCcce-----------EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEE
Confidence 4558899999996 556666777899998655555433222111 1235567777788888889999
Q ss_pred EEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 249 ~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
+++ .|..|.+|+++ ++.+..+ ......-+..+.+|+| +++++++..--+++|.+--++. -+|+.
T Consensus 203 msas~dt~i~lw~lk--Gq~L~~i-------dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kd-----G~fqe 267 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK--GQLLQSI-------DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKD-----GTFQE 267 (420)
T ss_pred EEecCCCcEEEEecC--Cceeeee-------ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccC-----cchhh
Confidence 999 89999999998 4454433 3334445678899999 9999999999999998643211 01110
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCC---CCceeeeeeeccccccccccccCCCccceee
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
- ....-+++|...|..++|+|+.+.+++.+ ||+++|||.+-. ++-...++...... +. ..-.+ ..
T Consensus 268 v---~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl---~a----ag~~p-~R 336 (420)
T KOG2096|consen 268 V---KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPL---HA----AGSEP-VR 336 (420)
T ss_pred h---hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcch---hh----cCCCc-eE
Confidence 0 01122567889999999999999999975 799999998631 11111111110000 00 00011 28
Q ss_pred EEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
++.+|+|+.||... ...+++|..++|+..-..-+.|...|.+++|+|+|+..+..+.
T Consensus 337 L~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 337 LELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred EEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 99999999988655 4579999999988744445689999999999999998776643
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-24 Score=196.81 Aligned_cols=270 Identities=13% Similarity=0.185 Sum_probs=211.3
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
+-+.|+. .+.+++|. ...|.+|+..++....+..... ....++.|+++|.
T Consensus 181 nlldWss---~n~laVal-g~~vylW~~~s~~v~~l~~~~~---------------~~vtSv~ws~~G~----------- 230 (484)
T KOG0305|consen 181 NLLDWSS---ANVLAVAL-GQSVYLWSASSGSVTELCSFGE---------------ELVTSVKWSPDGS----------- 230 (484)
T ss_pred hHhhccc---CCeEEEEe-cceEEEEecCCCceEEeEecCC---------------CceEEEEECCCCC-----------
Confidence 3467763 33555554 5589999999998777766641 2223889999999
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccc-cccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
+|++|..+|.|.|||+ ... +..+.+ .+ |...|-+++|. +..+.+| .++.|..+|++.......
T Consensus 231 -~LavG~~~g~v~iwD~-~~~------k~~~~~-~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---- 295 (484)
T KOG0305|consen 231 -HLAVGTSDGTVQIWDV-KEQ------KKTRTL-RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---- 295 (484)
T ss_pred -EEEEeecCCeEEEEeh-hhc------cccccc-cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----
Confidence 8999999999999992 221 122222 44 89999999998 6678888 899999999997665543
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC-C
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-N 352 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~ 352 (490)
.+.+|...|..++|++|+ .++|+|+.|+.+.|||....+. ...+.. |...|.+++|+| .
T Consensus 296 ---~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----~~~~~~------------H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 296 ---TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----KFTFTE------------HTAAVKALAWCPWQ 355 (484)
T ss_pred ---hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----cEEEec------------cceeeeEeeeCCCc
Confidence 268899999999999999 9999999999999999955432 344444 448999999999 5
Q ss_pred CCEEEEE---cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee--cCCeEEEEec
Q 011257 353 GRHILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGC 427 (490)
Q Consensus 353 g~~l~sg---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~vw~~ 427 (490)
...||+| .|++|++||..+ +..+..+..... |.++.|++..+-|+++- .++.|.||++
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 6678875 269999999997 888877765543 56999999886655433 5789999999
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
.+.+. +..+.+|...|..+++||||.....++.+...+.+
T Consensus 419 ps~~~-~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 419 PSMKL-VAELLGHTSRVLYLALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred cccce-eeeecCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence 99776 68999999999999999999998888877664433
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8.7e-24 Score=182.99 Aligned_cols=247 Identities=17% Similarity=0.238 Sum_probs=194.2
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..-+|.-.|+.+.|+|+...+++++.|..|+||....... ......|+
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------------~~~~~~h~--------- 303 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------------PTSSRPHE--------- 303 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------------cccccccc---------
Confidence 3457999999999999999999999999999999875542 34567777
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
++|+.+..+| .|+||++++.|++..+.|++++.........
T Consensus 304 ---~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---------------------------------- 344 (506)
T KOG0289|consen 304 ---EPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDE---------------------------------- 344 (506)
T ss_pred ---ccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeec----------------------------------
Confidence 8999999997 5679999999999999999988754421110
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
...-.+++.+|+|||.+|.+| .|+.+++||+......
T Consensus 345 -----------------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~- 382 (506)
T KOG0289|consen 345 -----------------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV- 382 (506)
T ss_pred -----------------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc-
Confidence 111356889999999999999 8999999999865533
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
..+.+|.++|..++|+.+| .+|++++.|+.|++||+|..+. .+++..... .++.++.
T Consensus 383 -------a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n----~kt~~l~~~-----------~~v~s~~ 439 (506)
T KOG0289|consen 383 -------AKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKN----FKTIQLDEK-----------KEVNSLS 439 (506)
T ss_pred -------ccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcc----cceeecccc-----------ccceeEE
Confidence 2689999999999999999 9999999999999999998653 345544331 3689999
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccC-CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 349 FARNGRHILSR-DYMTLKLWDINM-DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
|.+.|.||+.+ ++=+|++++-.+ ....+..+..|.+.. +.+.|....+++++++.|..++++.
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s---------------t~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS---------------TGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc---------------ceeeecccceEEeeccchhheEEee
Confidence 99999999986 445555555332 133444555555432 4889999999999999999999886
Q ss_pred c
Q 011257 427 C 427 (490)
Q Consensus 427 ~ 427 (490)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=9.8e-25 Score=192.19 Aligned_cols=288 Identities=15% Similarity=0.259 Sum_probs=216.5
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..+.|.+-|.++.+|...++++||+ .|.|+|||+...... .| +..+. .+
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k----------------~P----vsqLd----------cl 462 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK----------------SP----VSQLD----------CL 462 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC----------------Cc----ccccc----------cc
Confidence 3456999999999999999999997 568999999754311 01 11111 11
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
.-+.-|.++...| ||+.|++|+.-.++.|||+.........+.. .....+.+++.+||.+
T Consensus 463 ~rdnyiRSckL~p--dgrtLivGGeastlsiWDLAapTprikaelt-------------ssapaCyALa~spDak----- 522 (705)
T KOG0639|consen 463 NRDNYIRSCKLLP--DGRTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDAK----- 522 (705)
T ss_pred CcccceeeeEecC--CCceEEeccccceeeeeeccCCCcchhhhcC-------------CcchhhhhhhcCCccc-----
Confidence 1125577888885 7789999999999999999875432211111 1112234788899999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
..+++..||.|.||| +.+ ....+.+ .+|++.+.||.+++||..|-+| -|++|+.||+++..+..
T Consensus 523 -------vcFsccsdGnI~vwD-Lhn------q~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 523 -------VCFSCCSDGNIAVWD-LHN------QTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred -------eeeeeccCCcEEEEE-ccc------ceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence 789999999999999 332 2233344 8999999999999999999999 79999999999665442
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
+ ......|.++-++|++ .+++.|-.++.+.+......+. +.+..| ..-|.++.
T Consensus 588 q---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yqlhlh------------eScVLSlK 640 (705)
T KOG0639|consen 588 Q---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQLHLH------------ESCVLSLK 640 (705)
T ss_pred h---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----eeeccc------------ccEEEEEE
Confidence 2 2236789999999999 9999999999998887765442 344443 37899999
Q ss_pred ECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 349 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 349 ~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
|.+.|+++++ |-|+.+..|..-. +..+...+.... |+++.+|.|.++|+||+.|..-.||.+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~Ss----------------VlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKESSS----------------VLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccCceeeecCchhhhhhccCcc-ccceeeccccCc----------------ceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999998 5679999999876 555544433322 679999999999999999998888875
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.9e-24 Score=196.40 Aligned_cols=283 Identities=13% Similarity=0.209 Sum_probs=218.8
Q ss_pred CccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCc
Q 011257 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 88 p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (490)
|.|++-.++.+|. ..|..+++. ++..++++++||++++|+-..++......+..+. +.+
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~------g~i 60 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK------GFI 60 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccCc------cee
Confidence 4566778899999 778888876 4568999999999999998777655433333211 011
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
. ..++|.+..+ -.+++|+.|.++.+|. ... ..+..+ +.+|...|.+++...++.
T Consensus 61 ~------~~i~y~e~~~-----------~~l~~g~~D~~i~v~~-~~~------~~P~~~-LkgH~snVC~ls~~~~~~- 114 (745)
T KOG0301|consen 61 A------NSICYAESDK-----------GRLVVGGMDTTIIVFK-LSQ------AEPLYT-LKGHKSNVCSLSIGEDGT- 114 (745)
T ss_pred e------ccceeccccC-----------cceEeecccceEEEEe-cCC------CCchhh-hhccccceeeeecCCcCc-
Confidence 0 0133332111 1589999999999998 222 223333 389999999999888887
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
+++| .|.++++|-...-. . .+.+|+..|+.++.-|.+ .++||+.|.+|++|.-.+. +++|.
T Consensus 115 ~iSgSWD~TakvW~~~~l~---~-------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~~------l~tf~ 176 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELV---Y-------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGTL------LKTFS 176 (745)
T ss_pred eEecccccceEEecchhhh---c-------ccCCcchheeeeeecCCC--cEEeccCcceeeeccCCch------hhhhc
Confidence 8888 89999999875222 1 468999999999999986 8999999999999986432 46666
Q ss_pred cccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
+|. ..|+.+++-+++.++-++.||.|++|++. ++.+..+.+|... |.+++.
T Consensus 177 gHt------------D~VRgL~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~ 227 (745)
T KOG0301|consen 177 GHT------------DCVRGLAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISM 227 (745)
T ss_pred cch------------hheeeeEEecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEe
Confidence 655 88999999998877777788999999995 8999999999987 458888
Q ss_pred cCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
..++..++++++|++++||+.. ++ .+.+....-.|+++.+-+.|.....++.+..+.+
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~--e~-~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD--EC-VQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC--ce-EEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence 8889999999999999999988 55 5777777778999999999998888877665544
No 116
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=190.00 Aligned_cols=285 Identities=16% Similarity=0.207 Sum_probs=212.3
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
++..+.||. +.|.+++=+|.. -..+++|+.||.|++||+.+..+...+..+. |.+.
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~-ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~--------G~V~--- 113 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNK-LSTVASGSCDGEVKIWNLSQRECIRTFKAHE--------GLVR--- 113 (433)
T ss_pred chhhccccc------------cccchhhcCcch-hhhhhccccCceEEEEehhhhhhhheeeccc--------Ccee---
Confidence 566678888 889999998743 2578999999999999999877666555442 1222
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
.+++.. +.+++++.|.+|+.|. .+.. ..+++ .-...+..+.-+..+..+++|
T Consensus 114 ----Gi~v~~--------------~~~~tvgdDKtvK~wk----~~~~----p~~ti--lg~s~~~gIdh~~~~~~FaTc 165 (433)
T KOG0268|consen 114 ----GICVTQ--------------TSFFTVGDDKTVKQWK----IDGP----PLHTI--LGKSVYLGIDHHRKNSVFATC 165 (433)
T ss_pred ----eEEecc--------------cceEEecCCcceeeee----ccCC----cceee--ecccccccccccccccccccc
Confidence 233332 2689999999999998 2221 23333 112445566666667777776
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
. -.|.+||.+...+.. .+.-....|.++.|+|....+|++|+.|+.|.+||++++....+ +...
T Consensus 166 G-e~i~IWD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K----Vi~~--- 229 (433)
T KOG0268|consen 166 G-EQIDIWDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK----VILT--- 229 (433)
T ss_pred C-ceeeecccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce----eeee---
Confidence 2 248999998444332 34445778999999999878899999999999999999876432 2211
Q ss_pred CccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
..-+.|+|+|.+-.+++|+ |..++.||++.-..++....+|... |+++.|||.|
T Consensus 230 ----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG 284 (433)
T KOG0268|consen 230 ----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTG 284 (433)
T ss_pred ----------ccccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCc
Confidence 2357799999776667774 6999999999767788888888766 6799999999
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecCe
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRGM 469 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~~ 469 (490)
+-+++||.|.+|+||.+..+...-.....-...|.++.||-|.+....|+.+...+.+-
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999999988654334444457899999999999999999887766553
No 117
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.1e-24 Score=181.76 Aligned_cols=246 Identities=15% Similarity=0.247 Sum_probs=202.8
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-ccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~ 109 (490)
..-+.++|.|++||.|...||+|+.||.|++|.+.++.++ ..| ..|+
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl-----------------------RrFdrAHt--------- 306 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL-----------------------RRFDRAHT--------- 306 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH-----------------------HHhhhhhc---------
Confidence 3458899999999999999999999999999999999864 445 4788
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|+++.|+. ++..+++++.|.++|+.-+..|++..
T Consensus 307 ---kGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LK--------------------------------------- 342 (508)
T KOG0275|consen 307 ---KGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLK--------------------------------------- 342 (508)
T ss_pred ---cCeeEEEEcc--CcchhhcccccceEEEeccccchhHH---------------------------------------
Confidence 8899999984 67799999999999999887776322
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
. +.+|+..|+...|.++|..++++ .||+|++|+..+. .+.
T Consensus 343 -------------------------------------E-frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-eC~ 383 (508)
T KOG0275|consen 343 -------------------------------------E-FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-ECL 383 (508)
T ss_pred -------------------------------------H-hcCccccccceEEcCCCCeEEEecCCccEEEecCcch-hhh
Confidence 1 37888999999999999999999 8999999999844 454
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
..+ ...+...+|.++..-|.++..++.|....++.+-++.. +. ++.|...... .+...+.+
T Consensus 384 ~Tf-----k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Qv----VrsfsSGkRE---------gGdFi~~~ 444 (508)
T KOG0275|consen 384 STF-----KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QV----VRSFSSGKRE---------GGDFINAI 444 (508)
T ss_pred hhc-----cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eE----EeeeccCCcc---------CCceEEEE
Confidence 433 22345678999999998888999999999999999874 32 3555432211 14566778
Q ss_pred ECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 349 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 349 ~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
.||.|.++.+ |.|+.++.|...+ ++...++..|... |..++-+|..++||+-++||.+++|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~s-G~LE~tl~VhEkd---------------vIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLS-GKLERTLPVHEKD---------------VIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeec-Cceeeeeeccccc---------------ccccccCcccchhhhhcccchhhhcC
Confidence 9999999998 6789999999997 9999999998875 34889999999999999999999996
No 118
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=4.9e-23 Score=196.06 Aligned_cols=227 Identities=14% Similarity=0.226 Sum_probs=155.2
Q ss_pred CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccC
Q 011257 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (490)
Q Consensus 202 ~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 279 (490)
+.++.+++|+... ......+ .+|...|.+++|+|+ +.+|++| .|+.|++||+.........+......+.
T Consensus 51 G~~gvI~L~~~~r-------~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 51 GLIGAIRLENQMR-------KPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CceeEEEeeecCC-------CceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 4456667776211 1122333 789999999999997 7899998 8999999999754321110000011357
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE
Q 011257 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg 359 (490)
+|...|.+++|+|++..+|++++.|++|++||+++++.. ..+.. ...|.+++|+|+|.+|+++
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i~~-------------~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQINM-------------PKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEEec-------------CCcEEEEEECCCCCEEEEE
Confidence 899999999999998456789999999999999987532 23321 1579999999999999987
Q ss_pred c-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC----eEEEEecCCCceee
Q 011257 360 D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAES 434 (490)
Q Consensus 360 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg----~i~vw~~~~~~~~~ 434 (490)
+ |+.|+|||+++ ++.+..+.+|.+..... .++...|++++.+|++++.|+ .|+|||+++....+
T Consensus 186 s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 186 CVGKHMHIIDPRK-QEIASSFHIHDGGKNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred ecCCEEEEEECCC-CcEEEEEecccCCceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 4 79999999997 88888898887642110 023445779999999988764 79999999633323
Q ss_pred eEe--ccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 435 TTL--EASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 435 ~~~--~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
... ..+.+.+...-..+++...+.+..+..
T Consensus 255 ~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 255 VTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred EEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 443 333343434444444555544444443
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.1e-23 Score=189.58 Aligned_cols=321 Identities=16% Similarity=0.207 Sum_probs=226.0
Q ss_pred cccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCC
Q 011257 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (490)
Q Consensus 21 ~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 100 (490)
+.|.........+|++.|.|++.+|.|.+||+|+.||+|+||.+.+++++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv------------------------------ 435 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV------------------------------ 435 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE------------------------------
Confidence 55777777778899999999999999999999999999999999998854
Q ss_pred cccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEe
Q 011257 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (490)
Q Consensus 101 ~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 180 (490)
+....++.|.+|+|+|.++-..|+++..+. +.|-+..-|........
T Consensus 436 ------r~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t-------------------------- 482 (733)
T KOG0650|consen 436 ------RTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPT-------------------------- 482 (733)
T ss_pred ------EEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcch--------------------------
Confidence 222223569999999977765566655444 65655443311110000
Q ss_pred ccCCccccccccCCCCccccC----CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe----c
Q 011257 181 ANGGCGERNFGCASNDSSFPP----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----D 252 (490)
Q Consensus 181 ~~g~~~~~~~~~~~~~~l~~~----~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~ 252 (490)
.+.++.+ ..++.+..|. -...+..... .+.. -.|...|..+.|+..|.+|++. .
T Consensus 483 --------------~ell~~~~~~~~p~~~~~~W~-~~~~~e~~~~--v~~~-I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 483 --------------KELLASAPNESEPDAAVVTWS-RASLDELEKG--VCIV-IKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred --------------hhhhhcCCCccCCcccceeec-hhhhhhhccc--eEEE-EecCCccceeeeecCCceEEEeccCCC
Confidence 0011111 2334555665 1111111111 1111 3577899999999999999995 2
Q ss_pred CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCC
Q 011257 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 253 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
...|.++++.....+. .+....+.|.++.|+|.. .+|+.++ ...|+|||+...+++ +.+....
T Consensus 545 ~~~VliHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelv----KkL~tg~--- 607 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELV----KKLLTGS--- 607 (733)
T ss_pred cceEEEEecccccccC--------chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHH----HHHhcCC---
Confidence 4678888887333221 244456789999999998 5555554 457999999886543 3332222
Q ss_pred ccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
..|..++.+|.|..|+.|+ |+.+..+|++...++.+++..|... |++++|++.-.
T Consensus 608 ---------kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---------------vr~Va~H~ryP 663 (733)
T KOG0650|consen 608 ---------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---------------VRSVAFHKRYP 663 (733)
T ss_pred ---------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---------------hhhhhhccccc
Confidence 5799999999999999886 5999999999877899999999887 45999999999
Q ss_pred EEEEeecCCeEEEEecCC-------C-ceeeeEeccCCCc----eEEEEEccCCCCCCCCccCc
Q 011257 412 RVATGSYSNLFRVFGCSE-------G-SAESTTLEASKNP----MRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~-------~-~~~~~~~~~~~~~----v~~~~~sp~~~~~~~~~~~~ 463 (490)
++++|+.||++.|+.-.- . -..+..+.+|... |....|+|..+.+..++.++
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG 727 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence 999999999999985321 1 1224667888765 88999999999887665443
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.3e-23 Score=170.15 Aligned_cols=280 Identities=14% Similarity=0.220 Sum_probs=193.8
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+..|++-|.|+.|.+.|+.+|||+.|++|+|||...... ++..-...+.|.
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------------~W~~Ts~Wrah~--------- 59 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------------TWSCTSSWRAHD--------- 59 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------------ceEEeeeEEecC---------
Confidence 4567999999999999999999999999999999754331 333445677888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-------eEEEEeeeccCCCcCCCCCCccccccccCceEEecc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 182 (490)
+.|..|.|.+.+-|+.+++++.|+++.||.-... +.+....+... .+.+ ..+.|.|.
T Consensus 60 ---~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds------rssV-------~DV~FaP~ 123 (361)
T KOG2445|consen 60 ---GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS------RSSV-------TDVKFAPK 123 (361)
T ss_pred ---CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC------Ccce-------eEEEecch
Confidence 8899999998777999999999999999975321 22222222211 1222 37788887
Q ss_pred CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeee-------ccccccceeEEEecCC---CCEEEEec
Q 011257 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-------AHAHDYHINSISNNSD---GETFISAD 252 (490)
Q Consensus 183 g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~i~~~~~---~~~l~~~~ 252 (490)
.... .+++++.||.++||+.....+. ....++.. ...+.....|+.|+|. ..+||.|.
T Consensus 124 hlGL----------klA~~~aDG~lRIYEA~dp~nL--s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 124 HLGL----------KLAAASADGILRIYEAPDPMNL--SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred hcce----------EEEEeccCcEEEEEecCCcccc--ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 6543 7899999999999984332222 11111111 1235566789999985 56788884
Q ss_pred CC------cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCccccccccc
Q 011257 253 DL------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (490)
Q Consensus 253 d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (490)
+. .+++|...........+ .++.+|..+|+.++|.|+-. .+||+++.|| |+||.+........ ..
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kv----a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~-~e 265 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKV----AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE-EE 265 (361)
T ss_pred ccCCccccceEEEEecCCcceeeee----hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh-hh
Confidence 43 88999887655333322 36789999999999999643 5799999999 99999985321000 00
Q ss_pred eeccccCC-----CccccccccccceEEEEECCCCCEEEE-EcCCeEEEEeccC
Q 011257 324 LFEEQEAP-----GTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (490)
Q Consensus 324 ~~~~~~~~-----~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~ 371 (490)
........ .....+.+|.+.|..++|+=.|..|++ |+||.|++|....
T Consensus 266 e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 266 EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 00000000 011235678899999999999999998 5679999998754
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.2e-24 Score=195.81 Aligned_cols=240 Identities=20% Similarity=0.244 Sum_probs=189.6
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC-ceeeeeecC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVK 274 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~-~~~~~~~~~ 274 (490)
+|++|+.||.|++|++ ..........+...+ ..|.+.|+.++...+++.|+++ .|-+|++|+..... -+..
T Consensus 39 yLfTgGRDg~i~~W~~-~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s----- 111 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSV-TQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS----- 111 (735)
T ss_pred eEEecCCCceEEEecc-ccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-----
Confidence 8999999999999993 222222122223333 7899999999999999999999 89999999998554 2222
Q ss_pred CCccCCCCCceEEEEE-cCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 275 PANMEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
++..|...|.|+++ .++. .++|+|+-|+.|.+||+.++.. ..+..+..-. ......++..+|.+++..+.|
T Consensus 112 --tir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t---~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 112 --TIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA--TLVASFNNVT---VNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred --hhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch--hhhhhccccc---cccCCCCCccceeeeecCCcc
Confidence 56889999999999 7776 8999999999999999998732 0012221111 111222677899999999999
Q ss_pred CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 354 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 354 ~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
..|++|+ .+.+++||.++ .+.+-.+++|... |..+-.++||..+++++.||+|++||+.-.++
T Consensus 184 t~ivsGgtek~lr~wDprt-~~kimkLrGHTdN---------------Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC 247 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDN---------------VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC 247 (735)
T ss_pred eEEEecCcccceEEecccc-ccceeeeeccccc---------------eEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence 8888875 59999999998 8888889999987 45899999999999999999999999998888
Q ss_pred eeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 433 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 433 ~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
+.++..|++.|+++..+|+-..+-.|.-++...+.
T Consensus 248 -l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 248 -LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred -eeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 68899999999999999888777766655555444
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.1e-23 Score=170.75 Aligned_cols=289 Identities=13% Similarity=0.166 Sum_probs=197.9
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeE
Q 011257 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (490)
Q Consensus 38 V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 117 (490)
-.|+.|++-|.+||.|..||.|.|||+.+.. .-..+.+|. .+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence 7899999999999999999999999998765 246688998 88999
Q ss_pred EEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCc
Q 011257 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (490)
Q Consensus 118 v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~ 197 (490)
++|++ +|..|++++.|..|.+||+..+.+.....+..+ +. ...|+|..+...+.......-+
T Consensus 71 l~WS~--dgr~LltsS~D~si~lwDl~~gs~l~rirf~sp---------v~-------~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 71 LCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSP---------VW-------GAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred EEecC--CCCEeeeecCCceeEEEeccCCCceeEEEccCc---------cc-------eeeeccccCCeEEEEEecCCcE
Confidence 99995 888999999999999999999987776665532 11 4456665543211111111111
Q ss_pred cccCCCCCcEEEeeeecccccccccceeeeecccc-ccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 198 l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
++.-+. +.-++ +..-..+. .....+..|.+.|+++++| ..|.+.+++..+. .+...+.+
T Consensus 133 vi~~s~-~~h~~---------------Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~-e~vas~ri-- 193 (405)
T KOG1273|consen 133 VIDFSD-PKHSV---------------LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL-ECVASFRI-- 193 (405)
T ss_pred EEEecC-Cceee---------------ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh-eeeeeeee--
Confidence 111111 11111 00000010 0111233688999999999 8999999999854 44433211
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc-----ccccceeccccCCCccccccccccceEEEEEC
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-----DTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
. ....|..+.++..| +.|++-+.|+.||.|+++.-... ..+.+.+..-- ..-.=.+++||
T Consensus 194 ---t-s~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV----------Nk~~Wk~ccfs 258 (405)
T KOG1273|consen 194 ---T-SVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV----------NKLQWKKCCFS 258 (405)
T ss_pred ---c-hheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH----------hhhhhhheeec
Confidence 1 13678899999999 99999999999999998731100 00001111000 00123568899
Q ss_pred CCCCEEEEEcC--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 351 RNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 351 p~g~~l~sg~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
.+|.|+++|+. ..++||.... |.+++.+.+..+.. ..++.|+|-...+++- ..|.|++|...
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~-GsLVKILhG~kgE~--------------l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSI-GSLVKILHGTKGEE--------------LLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred CCccEEEeccccceeEEEEecCC-cceeeeecCCchhh--------------eeecccccceeeeeec-cCCceEEEEee
Confidence 99999999854 8999999997 99999998877432 2388999998888887 67999999876
Q ss_pred C
Q 011257 429 E 429 (490)
Q Consensus 429 ~ 429 (490)
.
T Consensus 323 ~ 323 (405)
T KOG1273|consen 323 Q 323 (405)
T ss_pred c
Confidence 4
No 123
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=199.85 Aligned_cols=261 Identities=17% Similarity=0.292 Sum_probs=203.0
Q ss_pred ccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccc
Q 011257 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (490)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 95 (490)
.|+..+.+- ......+|.+.|.+++|..-+.+|++|+.|.++++||..++++ ...
T Consensus 232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----------------------~~~ 286 (537)
T KOG0274|consen 232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----------------------THS 286 (537)
T ss_pred EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----------------------EEE
Confidence 677777433 2333679999999999998778999999999999999998885 477
Q ss_pred cccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccC
Q 011257 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (490)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
+.+|. +.|.++... ..++++|+.|.+|++|++.++....+...+.. .+.
T Consensus 287 l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--------~V~------- 335 (537)
T KOG0274|consen 287 LQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--------PVN------- 335 (537)
T ss_pred ecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEEeccccc--------cEE-------
Confidence 88999 889988875 34788899999999999999988887764321 111
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (490)
++... .+++++|+.|++|++|+ ....+|++.+ .+|...|.++.+... ..+++| .|+
T Consensus 336 ~v~~~--------------~~~lvsgs~d~~v~VW~-------~~~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 336 CVQLD--------------EPLLVSGSYDGTVKVWD-------PRTGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EEEec--------------CCEEEEEecCceEEEEE-------hhhceeeeee-cCCcceEEEEEecCc-ceEEeeeecc
Confidence 22222 33899999999999999 2256777776 889999999988776 788888 799
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
.|++||+++..++.. ++.+|.+-+..+.+.. +.|++++.|++|++||..+++. ++.+.++
T Consensus 393 ~IkvWdl~~~~~c~~-------tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~----~~~~~~~------ 452 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIH-------TLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGEC----LRTLEGR------ 452 (537)
T ss_pred ceEeecCCchhhhhh-------hhcCCccccccccccc---ceeEeccccccEEEeecccCce----eeeeccC------
Confidence 999999995534543 5788988887776643 7899999999999999999875 3555552
Q ss_pred ccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeee
Q 011257 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
|...|..+++. +...|+++.++.+++||+++ +.+...+-.+
T Consensus 453 -----~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~-~~~~~~l~~~ 493 (537)
T KOG0274|consen 453 -----HVGGVSALALG-KEEILCSSDDGSVKLWDLRS-GTLIRTLLST 493 (537)
T ss_pred -----CcccEEEeecC-cceEEEEecCCeeEEEeccc-Cchhhhhhhc
Confidence 22678888876 34455556789999999997 7777766333
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=7.5e-24 Score=175.73 Aligned_cols=253 Identities=20% Similarity=0.234 Sum_probs=192.1
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|.++|+++.|+|....|++|+.|++|++||....... +-...++.-
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK--------------------rA~K~~qd~------------ 216 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK--------------------RAFKVFQDT------------ 216 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHH--------------------HHHHHhhcc------------
Confidence 358999999999999999999999999999998754311 011222221
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.+|.++.|+| .|+++++|..-.++++||+.+-++-... .|
T Consensus 217 -~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~Qcfvsa---------------------------nP---------- 256 (430)
T KOG0640|consen 217 -EPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSA---------------------------NP---------- 256 (430)
T ss_pred -ceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeec---------------------------Cc----------
Confidence 5699999998 5669999999999999999986532210 01
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
...|+..|+++.+++.+++.+++ .||.|++||-- ..++++.
T Consensus 257 -------------------------------------d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t 298 (430)
T KOG0640|consen 257 -------------------------------------DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRT 298 (430)
T ss_pred -------------------------------------ccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHH
Confidence 15678999999999999999999 89999999976 5556554
Q ss_pred eecCCCccCCC-CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 271 VDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 271 ~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+ -..| ...|.+..|..++ +++++.+.|..+++|.+.+++.+ ..+.+.... +...--+...|
T Consensus 299 ~------~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l----~~YtGAg~t-------grq~~rtqAvF 360 (430)
T KOG0640|consen 299 I------GNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRML----KEYTGAGTT-------GRQKHRTQAVF 360 (430)
T ss_pred H------HhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCceE----EEEecCCcc-------cchhhhhhhhh
Confidence 3 1334 4679999999999 99999999999999999998753 555543211 11122345568
Q ss_pred CCCCCEEEEEcC--CeEEEEeccCCCCceee-eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 350 ARNGRHILSRDY--MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 350 sp~g~~l~sg~d--~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+....|++.-+. +.++-||.++ ...+.. -.+|.+. +..+.-||.+.-+++++.|-.+|+|-
T Consensus 361 NhtEdyVl~pDEas~slcsWdaRt-adr~~l~slgHn~a---------------~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 361 NHTEDYVLFPDEASNSLCSWDART-ADRVALLSLGHNGA---------------VRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCccceEEccccccCceeeccccc-hhhhhhcccCCCCC---------------ceEEEeCCCCCceeeecccceeeeee
Confidence 878888887654 8999999997 444433 3466665 34888999999999999999999997
Q ss_pred cC
Q 011257 427 CS 428 (490)
Q Consensus 427 ~~ 428 (490)
-+
T Consensus 425 rr 426 (430)
T KOG0640|consen 425 RR 426 (430)
T ss_pred ec
Confidence 54
No 125
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.6e-23 Score=181.50 Aligned_cols=241 Identities=15% Similarity=0.198 Sum_probs=182.4
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|...|.+++.|+||+|||+|+.|..|.||+.++.+. +..+.+|.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----------------------v~~~~ghr------------ 244 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----------------------VKVFKGHR------------ 244 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccch-----------------------hhcccccc------------
Confidence 6889999999999999999999999999999998773 46688998
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.+++|-- ....+++++.|+.|++|+++......
T Consensus 245 ~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~ve------------------------------------------ 280 (479)
T KOG0299|consen 245 GAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVE------------------------------------------ 280 (479)
T ss_pred cceeeeeeec--CccceeeeecCCceEEEehhHhHHHH------------------------------------------
Confidence 8999999985 33589999999999999987643211
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+ +.+|.+.|..|....-++.+..| .|+++++|++....+.
T Consensus 281 ----------------------------------t-lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql---- 321 (479)
T KOG0299|consen 281 ----------------------------------T-LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL---- 321 (479)
T ss_pred ----------------------------------H-HhCCccceeeechhcccceEEeccccceeEEEecccccee----
Confidence 1 36888999999887778777777 8999999999644443
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+.++.+.+-|++|-.+. .|++|+.+|.|.+|++...+.+ .+......-.+..--..+..+|++++..|
T Consensus 322 -----ifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkpl----f~~~~AHgv~~~~~~~~~~~Witsla~i~ 390 (479)
T KOG0299|consen 322 -----IFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKPL----FTSRLAHGVIPELDPVNGNFWITSLAVIP 390 (479)
T ss_pred -----eeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCce----eEeeccccccCCccccccccceeeeEecc
Confidence 356788899999998874 8999999999999999887643 33322111000000011225899999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeee--eccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQV--HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 417 (490)
...++++|+ +|.|++|-+..+...+..+.. -.+. |.+++|+++|++|++|.
T Consensus 391 ~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~Gf---------------VNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 391 GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGF---------------VNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cCceEEecCCCCceEEEEecCCccccceeeecccccE---------------EEEEEEccCCCEEEEec
Confidence 999999997 599999999863233322221 1122 55999999999766553
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.1e-23 Score=168.79 Aligned_cols=257 Identities=13% Similarity=0.242 Sum_probs=188.5
Q ss_pred ccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccc
Q 011257 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (490)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 95 (490)
.|.+.+- |...+-....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...
T Consensus 54 ~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------------------------~~~ 108 (347)
T KOG0647|consen 54 IWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------------------------VSQ 108 (347)
T ss_pred EEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC------------------------eee
Confidence 3555552 333334456799999999999999999999999999999999887 456
Q ss_pred cccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccC
Q 011257 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (490)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
+..|. ++|..+.|-+..+...|++|+.|++|++||++.........++
T Consensus 109 v~~Hd------------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-------------------- 156 (347)
T KOG0647|consen 109 VAAHD------------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-------------------- 156 (347)
T ss_pred eeecc------------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--------------------
Confidence 77888 8899999997666668999999999999999976544433322
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (490)
..+.++.. ....++.+ .+.
T Consensus 157 ----------------------------------------------------------eRvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 157 ----------------------------------------------------------ERVYAADV--LYPMAVVATAER 176 (347)
T ss_pred ----------------------------------------------------------ceeeehhc--cCceeEEEecCC
Confidence 11222221 23355666 888
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
.|.+|+++.....+..+ .....-.++|++..++. ..++.|+..|++-+..+..+.. +.-.+|+.|.....
T Consensus 177 ~i~vynL~n~~te~k~~------~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~- 246 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRI------ESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNS- 246 (347)
T ss_pred cEEEEEcCCCcchhhhh------cCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCceeEEEeccCCC-
Confidence 99999997554443321 12235568899999998 7789999999999999887633 12356777653222
Q ss_pred ccccccccceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 011257 335 SFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 413 (490)
..+....|.+|+|+|.-..|++ |+||++.+||-+. ...+.+.+.|... |++++|+.+|.++
T Consensus 247 --~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qp---------------Itcc~fn~~G~if 308 (347)
T KOG0647|consen 247 --VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQP---------------ITCCSFNRNGSIF 308 (347)
T ss_pred --CCCceEEecceEeecccceEEEecCCceEEEecchh-hhhhhccCcCCCc---------------cceeEecCCCCEE
Confidence 1112357899999997777777 6899999999986 6667777666655 5699999999998
Q ss_pred EEee
Q 011257 414 ATGS 417 (490)
Q Consensus 414 ~s~~ 417 (490)
|.+.
T Consensus 309 aYA~ 312 (347)
T KOG0647|consen 309 AYAL 312 (347)
T ss_pred EEEe
Confidence 8654
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-23 Score=173.82 Aligned_cols=280 Identities=14% Similarity=0.246 Sum_probs=201.7
Q ss_pred cccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccc--c---------ccccc-
Q 011257 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD--L---------EMMDY- 82 (490)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~--~---------~~~~~- 82 (490)
..|.+.. .+......+|.+.|.|+.|++.+.++++++.|++..||...-+-..+..... + ++...
T Consensus 173 ~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 173 RIWSLES---GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred eEEeecc---ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 4566654 2334456689999999999999999999999999999984432211110000 0 00000
Q ss_pred -eeec---CCcc-ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccC
Q 011257 83 -SMSR---HPEF-RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVH 157 (490)
Q Consensus 83 -~~~~---~p~~-~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~ 157 (490)
.-.. .|.. ..+..+.+|. +.|.+..|.. .|..+++++.|++..+||+++++....
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~------------~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~~------ 309 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHR------------AVVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVNI------ 309 (481)
T ss_pred cccccccCCceeeeeeeeeeccc------------cceEehhhhc--CcceeeeeeccccceeeeeccCceecc------
Confidence 0000 0000 1233455555 7788888874 567889999999999999988875442
Q ss_pred CCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccccee
Q 011257 158 PEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN 237 (490)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 237 (490)
+.+|....+
T Consensus 310 -----------------------------------------------------------------------LtGHd~ELt 318 (481)
T KOG0300|consen 310 -----------------------------------------------------------------------LTGHDSELT 318 (481)
T ss_pred -----------------------------------------------------------------------ccCcchhcc
Confidence 257777778
Q ss_pred EEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc
Q 011257 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (490)
.++-+|..++++++ .|.+.++||.+..-+... .+++|...|+++.|.-+. .+++|+.|.+|++||+++.+
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~-------VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA-------VFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhcceee-------eecccccceeEEEEecCC--ceeecCCCceEEEeeecccc
Confidence 88889999999998 899999999985544444 478999999999999875 89999999999999999854
Q ss_pred ccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeee-----eeecccccccc
Q 011257 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-----QVHEHLRPKLC 390 (490)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~ 390 (490)
. ++.++... .+++.++.+..+..|+.--| ..|++||+. +..+..+ ++|...
T Consensus 390 s---plATIRtd-------------S~~NRvavs~g~~iIAiPhDNRqvRlfDln--G~RlaRlPrtsRqgHrRM----- 446 (481)
T KOG0300|consen 390 S---PLATIRTD-------------SPANRVAVSKGHPIIAIPHDNRQVRLFDLN--GNRLARLPRTSRQGHRRM----- 446 (481)
T ss_pred C---cceeeecC-------------CccceeEeecCCceEEeccCCceEEEEecC--CCccccCCccccccccee-----
Confidence 3 35565554 57899999988888888755 999999997 5544444 344443
Q ss_pred ccccCCCccceeeEEEcCCCC--EEEEeecCCeEEEEecCCC
Q 011257 391 DLYENDSIFDKFECCLSGDGG--RVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~--~l~s~~~dg~i~vw~~~~~ 430 (490)
|++++|..+.. -|++++-|..+.=|++...
T Consensus 447 ----------V~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 447 ----------VTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ----------eeeeeccccCcccccccccccceeeeeEeccc
Confidence 56899987654 3889999999999998754
No 128
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-22 Score=179.17 Aligned_cols=263 Identities=14% Similarity=0.182 Sum_probs=191.3
Q ss_pred cceeEEEEeecCCCcEEEEE--eCcCeEEEEEccCC--eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~--~~dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..+.+++|.. . +.|+++ +.|..+++|.-... ++..+....+... .+++......
T Consensus 35 pg~~s~~w~~--~-n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~---------------~Cv~~~s~S~---- 92 (673)
T KOG4378|consen 35 PGDFSFNWQR--R-NFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA---------------FCVACASQSL---- 92 (673)
T ss_pred Ccceeeeccc--c-ceEEEeecCCceeEEEecccCCCCccceeeccccchH---------------HHHhhhhcce----
Confidence 4489999974 2 335554 66889999976543 2222222111100 0222222223
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
|+++|+..+.|+||| +. ...+.+ ++++|...|+++.++....++|++ ..|.|.+..+.+....
T Consensus 93 --------y~~sgG~~~~Vkiwd-l~------~kl~hr-~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 93 --------YEISGGQSGCVKIWD-LR------AKLIHR-FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred --------eeeccCcCceeeehh-hH------HHHHhh-hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 899999999999999 22 122333 348999999999999999999999 7899999999855443
Q ss_pred eeeeecCCCccC-CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 268 FNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 268 ~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
-. +. +....|.-+.|+|....+|.+++.+|.|.+||+...... ..+ ...|..+...
T Consensus 157 t~--------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~-----------~~~HsAP~~g 213 (673)
T KOG4378|consen 157 TT--------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHA-----------SEAHSAPCRG 213 (673)
T ss_pred cc--------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cch-----------hhhccCCcCc
Confidence 22 22 224556789999988667889999999999999875432 222 3446689999
Q ss_pred EEECCCCCE-EEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 347 IKFARNGRH-ILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 347 l~~sp~g~~-l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
|+|+|.... |++ |-|..|.+||... .+....+...... ..++|+++|.+|+.|+..|.|..
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEE
Confidence 999996554 444 5689999999986 5655555544433 38999999999999999999999
Q ss_pred EecCCCceeeeEeccCCCceEEEEEccCC
Q 011257 425 FGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
||++.-+..+.++.+|...|++++|-|.-
T Consensus 277 YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 277 YDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EecccCCCCceEeeecccceeEEEeeecc
Confidence 99998887789999999999999999864
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=174.58 Aligned_cols=269 Identities=17% Similarity=0.271 Sum_probs=186.1
Q ss_pred ccccccccEEEEEECCCC--CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 30 EEVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg--~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
..+.|.+.+..+.-++-+ .+.|+=+..|.|+||++..... ........+.. -..+.+.++.+|.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~---~l~~~~~~~~~----s~~~Pl~t~~ghk------- 211 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN---ALSEPGLEVKD----SEFRPLFTFNGHK------- 211 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh---hhcCccccccc----cccCceEEecccC-------
Confidence 356788889988888855 4666667889999999874321 11111111111 1233455667777
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..=..++|+|...| .|++|..-+.|++|...++..+.- ..
T Consensus 212 -----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------~~--- 251 (440)
T KOG0302|consen 212 -----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVD-------------------------------QR--- 251 (440)
T ss_pred -----ccceeeeccccccc-ccccCccccceEeeeeccCceeec-------------------------------Cc---
Confidence 66789999995544 688888889999999887654320 00
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCC
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
. +.+|+..|..++|+|. ...|++| .|++|++||++...
T Consensus 252 ---------------------------------------P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 252 ---------------------------------------P-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ---------------------------------------c-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence 0 2578899999999996 4567777 79999999999664
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
+...+ ....|.+.|+.+.|+... .+||+|+.||+++|||++.-+. ..++..|+-|. .+|+
T Consensus 292 ~~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~-~~pVA~fk~Hk------------~pIt 351 (440)
T KOG0302|consen 292 KKAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKS-GQPVATFKYHK------------APIT 351 (440)
T ss_pred cccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccC-CCcceeEEecc------------CCee
Confidence 43332 237799999999999998 6999999999999999997553 24455655554 8999
Q ss_pred EEEECCC--CCEEEEEcCCeEEEEeccCCCC---------------ceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 346 DIKFARN--GRHILSRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 346 ~l~~sp~--g~~l~sg~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
+|.|+|. +-+.++|.|.+|.|||+..... +.+.+-.|.+.. . +-.+.|++
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk----------e---~KevhWH~ 418 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK----------E---VKEVHWHR 418 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh----------H---hhhheecc
Confidence 9999993 3344446789999999965211 122333343321 1 33788998
Q ss_pred C-CCEEEEeecCCeEEEEe
Q 011257 409 D-GGRVATGSYSNLFRVFG 426 (490)
Q Consensus 409 d-~~~l~s~~~dg~i~vw~ 426 (490)
. ..+|++.+.|| +.||.
T Consensus 419 QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCCeEEEecccc-eeEEE
Confidence 5 44788888888 44553
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=185.23 Aligned_cols=281 Identities=11% Similarity=0.133 Sum_probs=206.6
Q ss_pred eeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEE-EeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 106 ~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
+.++.|.+-|-++..+. ...++++|+ .|.|+|||+....-+. +..+ .+....+...+..++|||+
T Consensus 413 ~~tL~HGEvVcAvtIS~--~trhVyTgG-kgcVKVWdis~pg~k~PvsqL-----------dcl~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISQPGNKSPVSQL-----------DCLNRDNYIRSCKLLPDGR 478 (705)
T ss_pred hhhhccCcEEEEEEecC--CcceeEecC-CCeEEEeeccCCCCCCccccc-----------cccCcccceeeeEecCCCc
Confidence 45566767788888873 445777776 5789999997642111 0000 0111223334677889998
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~ 263 (490)
.|++|+.-.++.|||+....... +..+........+++.+||.+..+++ .||.|.+||+..
T Consensus 479 ------------tLivGGeastlsiWDLAapTpri------kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 479 ------------TLIVGGEASTLSIWDLAAPTPRI------KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred ------------eEEeccccceeeeeeccCCCcch------hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 79999999999999943322211 11112333456788999999998888 999999999984
Q ss_pred CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccc
Q 011257 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
.. .++ .+.+|...+.||..+++| ..|-||+-|.+||-||+++++.. ..|. ....
T Consensus 541 q~-~Vr-------qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrql-------qqhd----------F~SQ 594 (705)
T KOG0639|consen 541 QT-LVR-------QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL-------QQHD----------FSSQ 594 (705)
T ss_pred ce-eee-------cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh-------hhhh----------hhhh
Confidence 33 333 689999999999999999 99999999999999999997542 2222 1257
Q ss_pred eEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
|.++..+|.+.+|+.|- .+.+.|-... +.....+..|... |.++.|.+-|+++++.+.|+.+
T Consensus 595 IfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 595 IFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred heecccCCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchhhh
Confidence 99999999999999994 4888887776 3444445445544 6799999999999999999999
Q ss_pred EEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
..|...-|..+ ...+. .++|.++..|.|.+....++.++
T Consensus 658 nawrtPyGasi-FqskE-~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 658 NAWRTPYGASI-FQSKE-SSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred hhccCccccce-eeccc-cCcceeeeeccCceEEEecCCCc
Confidence 99999988773 33433 57899999999998888776653
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.9e-22 Score=182.90 Aligned_cols=309 Identities=18% Similarity=0.198 Sum_probs=207.3
Q ss_pred EEEEECC---CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 39 SAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 39 ~~~~~s~---dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
.+..|++ ....||.+.+||.|.++|..... |.++-+.+..+..|. ..|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~-----------------fr~ee~~lk~~~aH~------------nAi 103 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV-----------------FRLEERQLKKPLAHK------------NAI 103 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh-----------------cchhhhhhccccccc------------cee
Confidence 3377776 34589999999999999987543 122333345567787 889
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
..+.|.| ....|++++.|.++++||+.+.++....-.-++ .+.+- +++|.|....
T Consensus 104 fDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH------~~Svk-------S~cf~~~n~~---------- 158 (720)
T KOG0321|consen 104 FDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH------TGSVK-------SECFMPTNPA---------- 158 (720)
T ss_pred EeeccCC--CceeEEEccCCceeeeeeeccceeecceeeccc------ccccc-------hhhhccCCCc----------
Confidence 9999998 346899999999999999999887665322221 12222 6777777664
Q ss_pred CccccCCCCCcEEEeeeeccccccc--------------------ccceeeeeccccccceeE---EEecCCCCEEEEe-
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNL--------------------VAGCRRIYAHAHDYHINS---ISNNSDGETFISA- 251 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~--------------------~~~~~~~~~~~~~~~v~~---i~~~~~~~~l~~~- 251 (490)
.+++|+.||.+.|||+-....... ..+..+.. .++...|.+ +.+..|...||++
T Consensus 159 -vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 159 -VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred -ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeeeEEEEEeccceeeecc
Confidence 789999999999999522210000 00001111 344455555 5567788889987
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCC---CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
.|+.|++||++.....++.-......+..| .-.+.++.....| .+|.+.+.|+.|++|++.+... .++..+.+
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg 313 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSI--SPVAEFSG 313 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCc--CchhhccC
Confidence 499999999996554433211111122223 3457788888888 4554455599999999987542 22333333
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
+... .--..-..+||+.++++| +|....+|.+.+...+...+.+|... |++++|
T Consensus 314 ~~~~----------sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e---------------Vt~V~w 368 (720)
T KOG0321|consen 314 KLNS----------SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE---------------VTTVRW 368 (720)
T ss_pred cccc----------eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE---------------EEEEee
Confidence 2210 111223468999999998 57999999999877778888888765 679999
Q ss_pred cCCC-CEEEEeecCCeEEEEecCCCc
Q 011257 407 SGDG-GRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 407 s~d~-~~l~s~~~dg~i~vw~~~~~~ 431 (490)
.|.. .-++++++|-.+++|++..+-
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCch
Confidence 8843 346777999999999997653
No 132
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.8e-22 Score=184.79 Aligned_cols=331 Identities=15% Similarity=0.169 Sum_probs=230.4
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
.+|.+.|+++.|+|++..|++++.|.++.+|.-.+..-+ +. +-..+....|..
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi---------Wv-------~~vRlGe~gg~a----------- 316 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI---------WV-------DVVRLGEVGGSA----------- 316 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccce---------EE-------EEEEeecccccc-----------
Confidence 489999999999999999999999999999997755311 00 000012222222
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..-....|+| +++.+++-+.-|-.++|..... ...+..-..++ ... ...++|.|.|.
T Consensus 317 -~GF~g~lw~~--n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH------~~~-------V~dv~W~psGe------ 374 (764)
T KOG1063|consen 317 -GGFWGGLWSP--NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH------VDG-------VKDVDWDPSGE------ 374 (764)
T ss_pred -cceeeEEEcC--CCCEEEEecccCcEEEEeccCccceeeccccccc------ccc-------ceeeeecCCCC------
Confidence 4577888987 5568999999999999983332 12221111111 111 22789999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC-----
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS----- 264 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~----- 264 (490)
+|++.+.|.+-|++- .++.+.. ...... ..-|...++|++|-+....|++| +...+++|+....
T Consensus 375 ------flLsvs~DQTTRlFa-~wg~q~~--wHEiaR-PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 375 ------FLLSVSLDQTTRLFA-RWGRQQE--WHEIAR-PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred ------EEEEeccccceeeec-ccccccc--eeeecc-cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 999999999999986 3322221 111111 14577788999999877778888 8889999987521
Q ss_pred ----C-----------------------cee--------------eee--------ec--------------CCCccCCC
Q 011257 265 ----N-----------------------QSF--------------NIV--------DV--------------KPANMEDL 281 (490)
Q Consensus 265 ----~-----------------------~~~--------------~~~--------~~--------------~~~~~~~~ 281 (490)
+ ..+ +.. .. +...+.+|
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 0 000 000 00 01246789
Q ss_pred CCceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEE
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 356 (490)
...|.+++.+|++ +++|+++.. ..|++|+..+-.. ...+.. |+-.|+.++|||||+||
T Consensus 525 GyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~----~~~L~~------------HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 525 GYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQ----VQELEG------------HSLTVTRLAFSPDGRYL 587 (764)
T ss_pred ceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhh----hheecc------------cceEEEEEEECCCCcEE
Confidence 9999999999999 999999875 3589999876543 234444 44789999999999999
Q ss_pred EEE-cCCeEEEEeccCCCCc---eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC--
Q 011257 357 LSR-DYMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-- 430 (490)
Q Consensus 357 ~sg-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~-- 430 (490)
++. -|+++.+|........ ....+.|... |+++.|+|++.++||+|.|.+|+||....+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRI---------------IWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d 652 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRI---------------IWDCSWSPDEKYFATASRDKKVKVWEEPDLRD 652 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceE---------------EEEcccCcccceeEEecCCceEEEEeccCchh
Confidence 996 5799999998642222 2224555544 789999999999999999999999999877
Q ss_pred ceeee-EeccCCCceEEEEEccCC
Q 011257 431 SAEST-TLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 431 ~~~~~-~~~~~~~~v~~~~~sp~~ 453 (490)
+...+ ....+..+|+++++.|--
T Consensus 653 ~~i~~~a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 653 KYISRFACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred hhhhhhchhccCCceeeEEeeccc
Confidence 33222 445678899999998743
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=7.1e-22 Score=174.44 Aligned_cols=349 Identities=14% Similarity=0.175 Sum_probs=225.3
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
..+.-|.|++|.++|+ ++||..+|.|.||+..+.+. ......|.
T Consensus 244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------------~k~~~aH~------------ 287 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------------SKQVHAHD------------ 287 (626)
T ss_pred ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------------EeEeeecC------------
Confidence 3457899999999995 77999999999999866542 23333787
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCC--CcCC--CCCCcc----------ccccccCceE
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP--EKAA--GNGPIF----------GSHVSAIPKS 178 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~--~~~~--~~~~~~----------~~~~~~~~~~ 178 (490)
+.|.+++... +| .|++|+.|+.|..||-.-.+. +..+.+..- .+.. ..+.++ ........+.
T Consensus 288 ggv~~L~~lr--~G-tllSGgKDRki~~Wd~~y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 288 GGVFSLCMLR--DG-TLLSGGKDRKIILWDDNYRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred CceEEEEEec--Cc-cEeecCccceEEecccccccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 8899999873 44 577799999999999322111 111111100 0000 000000 0000111222
Q ss_pred EeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEE
Q 011257 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (490)
Q Consensus 179 ~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~ 257 (490)
..-.+...+-...-++.+.+++++.|+.+++|+ ... .... .--..++.++.|+|.| .+|.| ..|...
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~----~~k--~~wt-----~~~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN----DHK--LEWT-----KIIEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEcc----CCc--eeEE-----EEecCceeEeeccCcc-eEEEeeccceEE
Confidence 223444555556667888999999999999998 111 1111 1223678899999999 88888 899999
Q ss_pred EEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccc
Q 011257 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (490)
+.|.++ ...+.+ ....+++++++|+|+| .+||.|+.|+.|+||.+..+.... .....+
T Consensus 432 V~d~e~-~~lv~~--------~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y---~r~~k~--------- 489 (626)
T KOG2106|consen 432 VLDTET-QDLVTI--------HTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKY---SRVGKC--------- 489 (626)
T ss_pred EEeccc-ceeEEE--------EecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEE---EEeeee---------
Confidence 999985 434332 1127889999999999 999999999999999988765321 111111
Q ss_pred cccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeecccccccccc----ccCCCccceeeEEEcCCCCE
Q 011257 338 TEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL----YENDSIFDKFECCLSGDGGR 412 (490)
Q Consensus 338 ~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~d~~~ 412 (490)
+..+|+.+.||+|+++|.+- .|-.|-.|.... .+.....+. -.+....|.+ +....-.+|..++-+.+.++
T Consensus 490 --~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~ts~kD-vkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~ 565 (626)
T KOG2106|consen 490 --SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQITSVKD-VKWATYTCTLGFEVFGGSDGTDINAVARSHCEKL 565 (626)
T ss_pred --cCceeEEeeecCCCceEEeccCceEEEEEcccc-Ccccceecc-eeeeeeEEEEEEEEecccCCchHHHhhhhhhhhh
Confidence 22689999999999999995 468899994432 222111100 0000000000 00011112346777788899
Q ss_pred EEEeecCCeEEEEecCC--CceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 413 VATGSYSNLFRVFGCSE--GSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 413 l~s~~~dg~i~vw~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
+|+|.+.|.|++|...- .+.....+.+|.+.|.+++|.-........
T Consensus 566 lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~t 614 (626)
T KOG2106|consen 566 LASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIST 614 (626)
T ss_pred hhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEec
Confidence 99999999999998762 233356788999999999999766654433
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.1e-23 Score=190.62 Aligned_cols=283 Identities=15% Similarity=0.226 Sum_probs=202.2
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
+....+|+..++-..++.++.. .++||.+........ ....+......+ -.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~-------------------~~~~~k~kqn~~---------~S 89 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-------------------CNHRFKTKQNKF---------YS 89 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc-------------------eeeeccccccee---------ee
Confidence 5667788888988888888755 788888775442100 000011111000 23
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
+..|.|. +-..++|++++..|.|.+||+.......
T Consensus 90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk-------------------------------------------- 124 (839)
T KOG0269|consen 90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNK-------------------------------------------- 124 (839)
T ss_pred hhhcccc-cchhhhheeecCCCcEEEEecCccccch--------------------------------------------
Confidence 5567777 3556788888888888888876521000
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.+.. +..|...+.++.|++. ..+|++| .||+|++||++......
T Consensus 125 -----------------------------~l~~-f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~---- 170 (839)
T KOG0269|consen 125 -----------------------------LLTV-FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS---- 170 (839)
T ss_pred -----------------------------hhhH-hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc----
Confidence 0001 3678899999999985 5677778 89999999999554332
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
++.+....|+.++|+|.....|+++...|.+.+||+|....+ ...+.. |.++|.++.|+|+
T Consensus 171 ----t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---~~k~~A------------H~GpV~c~nwhPn 231 (839)
T KOG0269|consen 171 ----TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---EKKLTA------------HNGPVLCLNWHPN 231 (839)
T ss_pred ----cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH---HHHhhc------------ccCceEEEeecCC
Confidence 355678899999999987799999999999999999987655 344444 4599999999999
Q ss_pred CCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCE-EEEee--cCCeEEEEecC
Q 011257 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGS--YSNLFRVFGCS 428 (490)
Q Consensus 353 g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~~--~dg~i~vw~~~ 428 (490)
+.+||+|+ |+.|+|||... .+.......+.. .+|.++.|-|+..+ ||+++ .|-.|+|||++
T Consensus 232 r~~lATGGRDK~vkiWd~t~-~~~~~~~tInTi--------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTD-SRAKPKHTINTI--------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred CceeeecCCCccEEEEeccC-CCccceeEEeec--------------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 99999975 79999999984 333322222222 23569999998775 66655 47899999999
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
..-....++..|.+.++.++|-......+++
T Consensus 297 RPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 297 RPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred cccccceeeeccCccccceeccCCCceeeEe
Confidence 8877788999999999999998744444433
No 135
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-21 Score=162.78 Aligned_cols=244 Identities=15% Similarity=0.240 Sum_probs=180.6
Q ss_pred ccEEEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 36 DIISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
-.|..++|......++.++. |.+|+.-++.+++ +++-|.||. .
T Consensus 57 yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk-----------------------ylRYF~GH~------------~ 101 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK-----------------------YLRYFPGHK------------K 101 (311)
T ss_pred ccccEEEEecCCceEEEccCCCCCceEEEEeecCc-----------------------eEEEcCCCC------------c
Confidence 36777788776666666665 7899999998776 678899999 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|++++.+|.. +.|++++.|++|++||++..++.........+ ..+|.|+|-
T Consensus 102 ~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-----------------i~AfDp~GL--------- 153 (311)
T KOG1446|consen 102 RVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-----------------IAAFDPEGL--------- 153 (311)
T ss_pred eEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc-----------------ceeECCCCc---------
Confidence 89999999844 59999999999999999987776665544332 679999998
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+++++.....|++|| ++..+........ +..+.......+.|+|||+.++.+ ..+.+++.|.-.+. ....+.
T Consensus 154 ---ifA~~~~~~~IkLyD-~Rs~dkgPF~tf~--i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~tfs 226 (311)
T KOG1446|consen 154 ---IFALANGSELIKLYD-LRSFDKGPFTTFS--ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKSTFS 226 (311)
T ss_pred ---EEEEecCCCeEEEEE-ecccCCCCceeEc--cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-EeeeEe
Confidence 677777777999999 5544333222111 112445678899999999999998 89999999987554 333332
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
.++. ...-.....|+||+ +++++|+.||+|.+|+++++... ..+.+. +..++.++.|+|.
T Consensus 227 ~~~~----~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v----~~~~~~-----------~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 227 GYPN----AGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKV----AVLRGP-----------NGGPVSCVRFNPR 286 (311)
T ss_pred eccC----CCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEe----eEecCC-----------CCCCccccccCCc
Confidence 2211 11122578899999 99999999999999999998753 444442 2378899999998
Q ss_pred CCEEEEEcCCeEEEEecc
Q 011257 353 GRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 353 g~~l~sg~d~~i~iwd~~ 370 (490)
-..+++++ ..+.+|=..
T Consensus 287 ~~mf~sa~-s~l~fw~p~ 303 (311)
T KOG1446|consen 287 YAMFVSAS-SNLVFWLPD 303 (311)
T ss_pred eeeeeecC-ceEEEEecc
Confidence 76666665 477888654
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=175.62 Aligned_cols=238 Identities=16% Similarity=0.242 Sum_probs=179.3
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
+--.++|.|++-+|+|.+|+.|+..|.+++|.+.++. ++..+.+|-
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----------------------LL~v~~aHY----------- 123 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----------------------LLNVLSAHY----------- 123 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEecccc-----------------------HHHHHHhhc-----------
Confidence 3457889999999999999999999999999999887 467788998
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|+++.|+ .||.+|++|+.||.|.+|.+..-
T Consensus 124 -Q~ITcL~fs--~dgs~iiTgskDg~V~vW~l~~l--------------------------------------------- 155 (476)
T KOG0646|consen 124 -QSITCLKFS--DDGSHIITGSKDGAVLVWLLTDL--------------------------------------------- 155 (476)
T ss_pred -cceeEEEEe--CCCcEEEecCCCccEEEEEEEee---------------------------------------------
Confidence 889999998 68899999999999999987531
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+.+..++. ..+... +..|+-+|+++...+. ...++++ .|.++++||+..+....
T Consensus 156 -------v~a~~~~~---------------~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 156 -------VSADNDHS---------------VKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred -------cccccCCC---------------ccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 11111111 112222 2688889998876654 4577777 89999999998555444
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc--ceEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISD 346 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~ 346 (490)
.+. ....+.+++.+|-+ +.++.|+.+|.|.+.++........-+..-..+........+.+|.+ .|+|
T Consensus 213 ti~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 213 TIT---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC 282 (476)
T ss_pred EEe---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence 331 36778999999999 99999999999999888754311111111122222334456778888 9999
Q ss_pred EEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccc
Q 011257 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 347 l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
++.+-||..|++|+ ||.++|||+.+ .++++++....+.
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kgp 321 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKGP 321 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhccc
Confidence 99999999999996 69999999997 7888877643333
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-21 Score=180.66 Aligned_cols=337 Identities=14% Similarity=0.157 Sum_probs=250.0
Q ss_pred ccccccEEEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 32 VQEVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 32 ~~h~~~V~~~~~s~d--g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.++.. |+++. +|+ =+.++.|+.+|.++||++.+++ .+.+++++.
T Consensus 157 ~~~~~-Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-----------------------~v~~f~~~~--------- 202 (910)
T KOG1539|consen 157 VEGDF-ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-----------------------VVYTFQEFF--------- 202 (910)
T ss_pred ccCCc-eeeEe-cchhheeeEEEeecCCcEEEEEeccCc-----------------------EEEEecccc---------
Confidence 34444 77764 664 3568899999999999999887 457788888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|+++.=+|.-| .++.|..+|+|.++++..++....++... |.+. +++|.-||..
T Consensus 203 ---s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~--------g~Vt-------slSFrtDG~p---- 258 (910)
T KOG1539|consen 203 ---SRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDW--------GRVT-------SLSFRTDGNP---- 258 (910)
T ss_pred ---cceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEccc--------ccee-------EEEeccCCCe----
Confidence 8899999888655 89999999999999999998877776541 2333 7899999996
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc--
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-- 266 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~-- 266 (490)
.+++++..|.+.+|| +..... .......|.+.|....|-|....++++ .|+.+++|-..+++.
T Consensus 259 -------~las~~~~G~m~~wD-Le~kkl------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 259 -------LLASGRSNGDMAFWD-LEKKKL------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred -------eEEeccCCceEEEEE-cCCCee------eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 788899999999999 333222 112235677777777788877777776 677776664331100
Q ss_pred --------------eeee--------------------------------------------------------------
Q 011257 267 --------------SFNI-------------------------------------------------------------- 270 (490)
Q Consensus 267 --------------~~~~-------------------------------------------------------------- 270 (490)
+++.
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 0000
Q ss_pred ----------------------ee----------cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc
Q 011257 271 ----------------------VD----------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (490)
Q Consensus 271 ----------------------~~----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 318 (490)
++ +++..+......+++++.++-| ++.+.|...|.|-+|++.+|-..
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeee
Confidence 00 0111122234678899999999 99999999999999999998532
Q ss_pred ccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCC
Q 011257 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS 397 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (490)
..|.. -..|..+|+.++...-++.++++ .+|.+.+||... ..++..++.....
T Consensus 484 ----~sf~~---------~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~------------ 537 (910)
T KOG1539|consen 484 ----KSFGD---------SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSI------------ 537 (910)
T ss_pred ----ccccc---------CccccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCc------------
Confidence 33311 12355899999999988888886 579999999996 6666666655443
Q ss_pred ccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc-eecCeeec
Q 011257 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV-VRRGMFTH 472 (490)
Q Consensus 398 ~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~-~~~~~~~~ 472 (490)
..+..+.....++.+.+|=.|+++|..+.+. .+.+.+|.+.|++++|||||+....++.+.. +.|.-..+
T Consensus 538 ----~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 538 ----TGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ----ceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 3677888888999999999999999998877 6899999999999999999999999998665 44444333
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-23 Score=193.63 Aligned_cols=188 Identities=19% Similarity=0.295 Sum_probs=162.3
Q ss_pred cccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
.+|..+|.++.|+++..+|++| .+|+|++||++ ....++ ++.+|...+.+++|+|-+ .+++.|+.|+.++
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vr-------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVR-------TLTGHLLNITSVDFHPYG-EFFASGSTDTDLK 137 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhh-------hhhccccCcceeeeccce-EEeccccccccce
Confidence 7899999999999999999999 89999999999 444443 678999999999999999 8999999999999
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccc
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (490)
+||++.... .+.+.+| ...+..+.|+|+|++++.|. |.+++|||+.. ++.+..+..|...
T Consensus 138 iwD~Rk~Gc----~~~~~s~------------~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~-- 198 (825)
T KOG0267|consen 138 IWDIRKKGC----SHTYKSH------------TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGK-- 198 (825)
T ss_pred ehhhhccCc----eeeecCC------------cceeEEEeecCCCceeeccCCcceeeeecccc-ccccccccccccc--
Confidence 999995442 3555544 47899999999999999975 59999999996 9999999988876
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
|..+.|+|..-++++|+.|++|++||+++-+. +...+.....|.+.+|+|++.....+
T Consensus 199 -------------v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~-I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 199 -------------VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV-ISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred -------------ccccccCchhhhhccCCCCceeeeeccceeEE-eeccCCccCCceeeeecCCceeeecC
Confidence 34888999999999999999999999997765 45566667899999999999876655
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-21 Score=161.80 Aligned_cols=253 Identities=12% Similarity=0.218 Sum_probs=189.6
Q ss_pred EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcE
Q 011257 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (490)
Q Consensus 49 ~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~ 128 (490)
.+++|++...|.-+++.-.. ..+.-+..|....+-.++.|. ++|++++.+ +.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-----------~~~~~s~~~~l~~lF~~~aH~------------~sitavAVs----~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-----------KGCTDSVKPTLKPLFAFSAHA------------GSITALAVS----GPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-----------cccccccceeeeccccccccc------------cceeEEEec----cee
Confidence 36677777777777765322 011112233444455678888 899999995 679
Q ss_pred EEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEE
Q 011257 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (490)
Q Consensus 129 l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~ 208 (490)
+++|+.|-+|+|||+........
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987542221
Q ss_pred EeeeecccccccccceeeeeccccccceeEEEecCCCC--EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCce
Q 011257 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (490)
Q Consensus 209 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (490)
+-.|.+.|+++.|.+.-. .|++| +||.|.+|+...- .... .+.+|.+.|
T Consensus 79 --------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~-------slK~H~~~V 130 (362)
T KOG0294|consen 79 --------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLK-------SLKAHKGQV 130 (362)
T ss_pred --------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEee-------eeccccccc
Confidence 135668899999988754 78888 9999999999843 3333 568899999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEE
Q 011257 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (490)
Q Consensus 286 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~ 365 (490)
+.++.+|.+ ++.++.+.|+.+++||+-.++.. ..+... ..-+.+.|+|.|.+++.+....|-
T Consensus 131 t~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~ 192 (362)
T KOG0294|consen 131 TDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNLK-------------NKATLVSWSPQGDHFVVSGRNKID 192 (362)
T ss_pred ceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeeccC-------------CcceeeEEcCCCCEEEEEeccEEE
Confidence 999999999 99999999999999999988642 222222 233559999999999988778999
Q ss_pred EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceE
Q 011257 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (490)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 445 (490)
+|.+.+ ......+..... +.++.|- ++..|++|++|+.|++||.+++.+ +..+.+|..+|.
T Consensus 193 i~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~-~~~~~AH~~RVK 253 (362)
T KOG0294|consen 193 IYQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSDTP-LTEFLAHENRVK 253 (362)
T ss_pred EEeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCCcc-ceeeecchhhee
Confidence 999986 555444433311 2255565 778899999999999999998776 688999999999
Q ss_pred EEEEc
Q 011257 446 RQVQT 450 (490)
Q Consensus 446 ~~~~s 450 (490)
++.+-
T Consensus 254 ~i~~~ 258 (362)
T KOG0294|consen 254 DIASY 258 (362)
T ss_pred eeEEE
Confidence 99854
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=7.1e-22 Score=168.32 Aligned_cols=198 Identities=17% Similarity=0.209 Sum_probs=151.7
Q ss_pred cccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeE
Q 011257 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 307 (490)
.+|...=..++|+|- ...|++| .-+.|++|...++.-.+. ...+.+|...|-.++|+|....+|++|+-||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd-----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD-----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeec-----CccccccccchhhhccCCccCceEEeeecCceE
Confidence 678788889999994 3347788 678899999986543332 235678999999999999987899999999999
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccC--CCCceeeeeeecc
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEH 384 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~--~~~~~~~~~~~~~ 384 (490)
+|||+|.+.... ... .+.|...|+.|.|+.+-.+||+|+| |+++|||++. .++++..++.|..
T Consensus 283 rIWDiRs~~~~~--~~~------------~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKA--AVS------------TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccc--eeE------------eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 999999874210 111 2345588999999998889999866 9999999984 3678889999987
Q ss_pred ccccccccccCCCccceeeEEEcCC-CCEEEEeecCCeEEEEecCCCce---------------eeeEeccC--CCceEE
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSA---------------ESTTLEAS--KNPMRR 446 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~---------------~~~~~~~~--~~~v~~ 446 (490)
. |+++.|+|. ...|++++.|..|.+||+....- .-+.+..| +..+..
T Consensus 349 p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Ke 413 (440)
T KOG0302|consen 349 P---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKE 413 (440)
T ss_pred C---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhh
Confidence 6 569999994 56788889999999999864221 01223334 456889
Q ss_pred EEEccCCCCCCCCcc
Q 011257 447 QVQTPSRPSRPLGSL 461 (490)
Q Consensus 447 ~~~sp~~~~~~~~~~ 461 (490)
+.|++.-+-.+.+..
T Consensus 414 vhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 414 VHWHRQIPGLLVSTA 428 (440)
T ss_pred heeccCCCCeEEEec
Confidence 999998886665543
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.9e-22 Score=173.00 Aligned_cols=266 Identities=18% Similarity=0.137 Sum_probs=191.2
Q ss_pred cEEEEEe-CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 127 ALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 127 ~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
.+++++. .-..+.+|.+........ .....|.+. +++-+|+|. +++.|+..+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q--------~~v~Pg~v~-------al~s~n~G~------------~l~ag~i~g 103 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQ--------YIVLPGPVH-------ALASSNLGY------------FLLAGTISG 103 (476)
T ss_pred hheeeecccCccccccccCchhhhhh--------hccccccee-------eeecCCCce------------EEEeecccC
Confidence 4666654 345788998876532220 011112222 677788888 888888999
Q ss_pred cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC-CccCCCCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTE 283 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~ 283 (490)
.+.+|.+.. +..+..+ .+|-..|+++.|+-||.+|++| .||.|.+|.+-.--........+| ..+..|.-
T Consensus 104 ~lYlWelss-------G~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 104 NLYLWELSS-------GILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL 175 (476)
T ss_pred cEEEEEecc-------ccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence 999999322 2233333 7898999999999999999999 899999998753222111111121 25688999
Q ss_pred ceEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C
Q 011257 284 VITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y 361 (490)
Q Consensus 284 ~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d 361 (490)
+|+++...+.+. ..++|++.|.++++||+..+.+. .++.-+ ..+.+++.+|-++.++.|+ +
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lti~fp-------------~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LTITFP-------------SSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccceee----EEEecC-------------CcceeEEEcccccEEEecCCc
Confidence 999999887632 58999999999999999998754 333332 5799999999999999985 6
Q ss_pred CeEEEEeccCCC---------------CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 362 MTLKLWDINMDS---------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 362 ~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
|.|.+.++.... ..+..+.+|.+. ..|++++++-||.+|++|+.||.|.|||
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-------------~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-------------SAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCC-------------cceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 999998876411 122233334331 1377999999999999999999999999
Q ss_pred cCCCceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 427 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
+.+.++ ++++....++|+.+.+.|-.+...+
T Consensus 306 i~S~Q~-iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 306 IYSKQC-IRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred cchHHH-HHHHhhhccccceeEeeccccceec
Confidence 999887 6777767899999999665443333
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.1e-22 Score=159.50 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=178.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE-EEEeeeccCCCcCCCCCCccccccccCceEEec--cCCccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN 189 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~~~~~ 189 (490)
+.|..+... -.|.+|++++.|++|+|+.++.... ..+.++.++ .|++. .++|.. .|.
T Consensus 12 D~IHda~lD--yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh------~GPVw-------qv~wahPk~G~----- 71 (299)
T KOG1332|consen 12 DMIHDAQLD--YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH------SGPVW-------KVAWAHPKFGT----- 71 (299)
T ss_pred hhhhHhhhh--hhcceeeeecCCccEEEEEEcCCCCceeeeEecCC------CCCee-------EEeecccccCc-----
Confidence 667666543 3478999999999999999987643 444454443 34444 556643 455
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCc
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
+|++++.||.|.||. .+.. .......+ ..|...|++++|.|. |-.|+++ +||.|.+.+.+..+.
T Consensus 72 -------iLAScsYDgkVIiWk----e~~g-~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 72 -------ILASCSYDGKVIIWK----EENG-RWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred -------EeeEeecCceEEEEe----cCCC-chhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 899999999999998 2222 22222222 789999999999986 6677777 899999999986532
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCC---C----------CcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~---~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
-... .....|.-.|+++.|.|- | .+.|++|+.|..|+||+...++-. .-++
T Consensus 139 w~t~-----ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~--~e~~--------- 202 (299)
T KOG1332|consen 139 WTTS-----KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK--LERT--------- 202 (299)
T ss_pred ccch-----hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--hhhh---------
Confidence 2111 134679999999999985 2 146999999999999999886311 1122
Q ss_pred cccccccccceEEEEECCC----CCEEEEEc-CCeEEEEeccCCCCcee-e-eeeeccccccccccccCCCccceeeEEE
Q 011257 334 RSFFTEIIASISDIKFARN----GRHILSRD-YMTLKLWDINMDSGPVA-T-FQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 334 ~~~~~~h~~~i~~l~~sp~----g~~l~sg~-d~~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
+.+|.+.|+.++|.|. ..+||+++ ||++.||-.+.+.++-+ + +..... .++.+.|
T Consensus 203 ---l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~---------------~~w~vSW 264 (299)
T KOG1332|consen 203 ---LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD---------------VVWRVSW 264 (299)
T ss_pred ---hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc---------------ceEEEEE
Confidence 4455689999999994 35788875 69999998764222211 1 111111 1579999
Q ss_pred cCCCCEEEEeecCCeEEEEecCC
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|..|++|+.++.|+.|.+|.-..
T Consensus 265 S~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 265 SLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred eccccEEEEecCCcEEEEEEeCC
Confidence 99999999999999999998653
No 143
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5e-21 Score=159.19 Aligned_cols=244 Identities=17% Similarity=0.243 Sum_probs=180.4
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..+.|..++.+++|.++ ..+++|+.||.|+.+|+.++.. ..+..|.
T Consensus 49 ~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~------------------------~~igth~--------- 94 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE------------------------DQIGTHD--------- 94 (323)
T ss_pred hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc------------------------eeeccCC---------
Confidence 35679999999999985 4788999999999999998772 3467787
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
++|.+|.+++.. ..+++|+.|++|++||.+.......
T Consensus 95 ---~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~-------------------------------------- 131 (323)
T KOG1036|consen 95 ---EGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGT-------------------------------------- 131 (323)
T ss_pred ---CceEEEEeeccC--CeEEEcccCccEEEEeccccccccc--------------------------------------
Confidence 889999999733 4899999999999999887221100
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
......|.++.. .++.|+.| .+..+.+||++.....+
T Consensus 132 ----------------------------------------~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 132 ----------------------------------------FDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred ----------------------------------------cccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence 000124555544 46678887 99999999999766554
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
+. .-....-.+.++++-|++ .-++.++.||+|.+=.+...+...+.-+.|..|..... -....-+|++++
T Consensus 170 q~------reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~---~~~~~yPVNai~ 239 (323)
T KOG1036|consen 170 QR------RESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK---DTEIIYPVNAIA 239 (323)
T ss_pred hh------ccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccC---CceEEEEeceeE
Confidence 32 123346678999999977 78999999999988766655322233456666653211 112235899999
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec
Q 011257 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 418 (490)
|+|-...||+| +||.|.+||+.+ .+.+..+...... |-+++|+.||..||+++.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~-rKrl~q~~~~~~S---------------I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFN-RKRLKQLAKYETS---------------ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEecCCCceEEEccCcc-hhhhhhccCCCCc---------------eEEEEeccCCCeEEEEec
Confidence 99998899996 789999999997 7777766555332 348999999999999875
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.2e-23 Score=191.56 Aligned_cols=234 Identities=20% Similarity=0.342 Sum_probs=189.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|...|.|+..-..++.+++|+.|-.+-+|.+..... +..+.+|+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----------------------i~S~~~he---------- 70 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----------------------ITSLTGHE---------- 70 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-----------------------hheeeccC----------
Confidence 557899999999977889999999999999999875543 34588998
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
.+|.++.|++ ...++++|+.+|+|++||++..+....+..+. ..+..+.|+|.|.
T Consensus 71 --spIeSl~f~~--~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------------~~~~sv~f~P~~~------ 125 (825)
T KOG0267|consen 71 --SPIESLTFDT--SERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------------LNITSVDFHPYGE------ 125 (825)
T ss_pred --CcceeeecCc--chhhhcccccCCceeeeehhhhhhhhhhhccc---------------cCcceeeeccceE------
Confidence 8899999986 44588899999999999999877555333322 2334788999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+.+.|+.|+.+++|| ....-|...+ .+|...|..+.|+|+|++++.+ +|..+++||...+. ...
T Consensus 126 ------~~a~gStdtd~~iwD-------~Rk~Gc~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ 190 (825)
T KOG0267|consen 126 ------FFASGSTDTDLKIWD-------IRKKGCSHTY-KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSK 190 (825)
T ss_pred ------Eeccccccccceehh-------hhccCceeee-cCCcceeEEEeecCCCceeeccCCcceeeeecccccc-ccc
Confidence 789999999999999 2222355555 7799999999999999999999 89999999998443 332
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+..|...+..+.|+|.. -++++|+.|+++++||+++-+++. ..... ...|.+++|
T Consensus 191 -------ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~----s~~~~------------~~~v~~~~f 246 (825)
T KOG0267|consen 191 -------EFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVIS----SGKPE------------TDGVRSLAF 246 (825)
T ss_pred -------ccccccccccccccCchh-hhhccCCCCceeeeeccceeEEee----ccCCc------------cCCceeeee
Confidence 578899999999999998 899999999999999999765431 11111 167999999
Q ss_pred CCCCCEEEEEcC
Q 011257 350 ARNGRHILSRDY 361 (490)
Q Consensus 350 sp~g~~l~sg~d 361 (490)
+|+++.+++|..
T Consensus 247 n~~~~~~~~G~q 258 (825)
T KOG0267|consen 247 NPDGKIVLSGEQ 258 (825)
T ss_pred cCCceeeecCch
Confidence 999999999854
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=169.43 Aligned_cols=276 Identities=14% Similarity=0.189 Sum_probs=197.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|++|.|+|.. ..+++++.||+++||.++...-..+...+... .......|.|+|+.
T Consensus 214 ~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~-------------fPi~~a~f~p~G~~------- 271 (514)
T KOG2055|consen 214 GGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-------------FPIQKAEFAPNGHS------- 271 (514)
T ss_pred CCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeecc-------------CccceeeecCCCce-------
Confidence 779999999844 49999999999999999876544433333221 11226789999985
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeecccc-ccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
.+++++....+..||+... +...... ..++ ...+..+..++++++++.. ..|.|.+....+.. .+..
T Consensus 272 ----~i~~s~rrky~ysyDle~a-k~~k~~~-----~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s 340 (514)
T KOG2055|consen 272 ----VIFTSGRRKYLYSYDLETA-KVTKLKP-----PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITS 340 (514)
T ss_pred ----EEEecccceEEEEeecccc-ccccccC-----CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhhe
Confidence 6889999999999994222 2111111 1233 2456778899999999997 89999999887444 3322
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
+ ...+.|..++|+.++ +.|+.++.+|.|.+||++.... ++.|..... -.-++++.|
T Consensus 341 ~--------KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~----~~rf~D~G~-----------v~gts~~~S 396 (514)
T KOG2055|consen 341 F--------KIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSC----LHRFVDDGS-----------VHGTSLCIS 396 (514)
T ss_pred e--------eeccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcce----EEEEeecCc-----------cceeeeeec
Confidence 2 236789999999999 8888899999999999998753 355544321 123678888
Q ss_pred CCCCEEEEEcC-CeEEEEeccC-----CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec--CCeE
Q 011257 351 RNGRHILSRDY-MTLKLWDINM-----DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLF 422 (490)
Q Consensus 351 p~g~~l~sg~d-~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--dg~i 422 (490)
++|.|||+|++ |.|.|||.++ ..+|+.++..-. ..|.++.|++|+++||.+|. +..+
T Consensus 397 ~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---------------t~Itsl~Fn~d~qiLAiaS~~~knal 461 (514)
T KOG2055|consen 397 LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---------------TAITSLQFNHDAQILAIASRVKKNAL 461 (514)
T ss_pred CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---------------eeeeeeeeCcchhhhhhhhhccccce
Confidence 99999999998 9999999764 123333332222 13669999999999988774 6789
Q ss_pred EEEecCCCceeeeEec---cCCCceEEEEEccCCCCCCCCcc
Q 011257 423 RVFGCSEGSAESTTLE---ASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
|+-.+.+-.. ...+. ..-+.|++++|||.+...+++.-
T Consensus 462 rLVHvPS~TV-FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 462 RLVHVPSCTV-FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred EEEeccceee-eccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 9999886543 23332 33467999999998888777654
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=5.4e-21 Score=173.49 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=126.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC-CCCEEEEE-cC
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSR-DY 361 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg-~d 361 (490)
.|+.+.|.|-....|+.++.||.|++|.+..+..... ...+...++.|...|+++.|+| -...|+++ .|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 4678889997768999999999999999987653210 0112334677779999999999 44566666 46
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCC
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 441 (490)
-+|++||+.+ .+....+.+|.+. |++++|||||+.+|+.+.||+|+||+.++++..++.-++..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999997 8888899999887 57999999999999999999999999999877555444332
Q ss_pred -CceEEEEEccCCCCCCCCccCcceecC
Q 011257 442 -NPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 442 -~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
..--.+.|.-||..+...++++..-|.
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQ 791 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQ 791 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhh
Confidence 233467888999999888888776554
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.2e-21 Score=158.47 Aligned_cols=231 Identities=15% Similarity=0.241 Sum_probs=168.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|+++..-| ..|.++++|+.||.|.+||+++-.-.....
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~--------------------------------------- 83 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASG--------------------------------------- 83 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhcc---------------------------------------
Confidence 8899999987 558999999999999999998643111000
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
+++ ..+.+ ..+....+|...|.++.|-|- ...+.++ -|.++++||..+.+....+
T Consensus 84 ----li~-----k~~c~--------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 84 ----LIA-----KHKCI--------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred ----cee-----heeee--------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 000 00000 001113688899999999994 4456666 7999999999966554432
Q ss_pred eecCCCccCCCCCceEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
+ .++.|.+-+++|-.. .++|+|..|-.|++.|+.+|.. ..++.+| .+.|.++.
T Consensus 141 ------~---me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGH------------r~~vlaV~ 195 (397)
T KOG4283|consen 141 ------K---MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGH------------RDGVLAVE 195 (397)
T ss_pred ------e---cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc----eeeeccc------------cCceEEEE
Confidence 1 256677778887431 5788999999999999999864 3555554 58999999
Q ss_pred ECCCCCEEEE-E-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 349 FARNGRHILS-R-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 349 ~sp~g~~l~s-g-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
|+|...++++ | .||.|++||++....++..+..|....+.+.. .++.....|..++|+.|+.++++.+.|..+++|+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9998888765 5 47999999999866889999888864332222 2222333577999999999999999999999999
Q ss_pred cCCCce
Q 011257 427 CSEGSA 432 (490)
Q Consensus 427 ~~~~~~ 432 (490)
..+|+.
T Consensus 275 ~~~G~n 280 (397)
T KOG4283|consen 275 MESGRN 280 (397)
T ss_pred cccCcc
Confidence 998864
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.7e-20 Score=168.22 Aligned_cols=272 Identities=14% Similarity=0.176 Sum_probs=200.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.+++|+. ..+.||.+-.||.|-+|++...-... ..++++. + .....++|++.++
T Consensus 26 s~I~slA~s~--kS~~lAvsRt~g~IEiwN~~~~w~~~-~vi~g~~-----d-------rsIE~L~W~e~~R-------- 82 (691)
T KOG2048|consen 26 SEIVSLAYSH--KSNQLAVSRTDGNIEIWNLSNNWFLE-PVIHGPE-----D-------RSIESLAWAEGGR-------- 82 (691)
T ss_pred cceEEEEEec--cCCceeeeccCCcEEEEccCCCceee-EEEecCC-----C-------CceeeEEEccCCe--------
Confidence 6799999995 44589999999999999999863222 2222211 1 2223789997665
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
|++.+.+|.|.-||+... +.+..+ ....+.|++++.+|.+..++.| +||.++.++.....-.+..
T Consensus 83 -----LFS~g~sg~i~EwDl~~l-------k~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r- 148 (691)
T KOG2048|consen 83 -----LFSSGLSGSITEWDLHTL-------KQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR- 148 (691)
T ss_pred -----EEeecCCceEEEEecccC-------ceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-
Confidence 899999999999993222 222222 5566899999999999999998 9998888887744333332
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+....+.|.++.|+|++ ..+++|+.||.|++||..++.........+..-. +.-..-|+++.|-.
T Consensus 149 -----~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~--------k~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 149 -----SLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLS--------KREPTIVWSVLFLR 214 (691)
T ss_pred -----ecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccc--------cCCceEEEEEEEee
Confidence 344457899999999999 8899999999999999998865321011111110 00113578888886
Q ss_pred CCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
++ .|++|+. |+|.+||... +.+++....|... |.+++..+++..+++++.|+.|.-|...++
T Consensus 215 d~-tI~sgDS~G~V~FWd~~~-gTLiqS~~~h~ad---------------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 215 DS-TIASGDSAGTVTFWDSIF-GTLIQSHSCHDAD---------------VLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cC-cEEEecCCceEEEEcccC-cchhhhhhhhhcc---------------eeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 55 6788854 9999999997 8999988888876 569999999999999999999999998877
Q ss_pred ce---eeeEeccCCCceEEEEEccC
Q 011257 431 SA---ESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 431 ~~---~~~~~~~~~~~v~~~~~sp~ 452 (490)
+. .......|...|++++..++
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc
Confidence 43 22345677788999988887
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=6.4e-21 Score=164.17 Aligned_cols=330 Identities=13% Similarity=0.202 Sum_probs=209.9
Q ss_pred cccEEEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 35 ~~~V~~~~~s~dg~-~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
..+|.++.|.++.. .||||+.|..|+||.+.....-+ .. +.-.++..+..|+ .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------~~------~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------GD------MKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------Cc------eeEEEeecccCCc------------c
Confidence 46899999999766 99999999999999998765320 00 1234566777787 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|++++|+| +|+.|++|+.+|.|.+|....-... .. +.
T Consensus 67 aVN~vRf~p--~gelLASg~D~g~v~lWk~~~~~~~-----~~-------------------------d~---------- 104 (434)
T KOG1009|consen 67 AVNVVRFSP--DGELLASGGDGGEVFLWKQGDVRIF-----DA-------------------------DT---------- 104 (434)
T ss_pred eeEEEEEcC--CcCeeeecCCCceEEEEEecCcCCc-----cc-------------------------cc----------
Confidence 899999997 6779999999999999987651110 00 00
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
..+.....+..+....+|...|..++|+|++.+++++ -|..+++||+.. ++...
T Consensus 105 ---------------------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~--- 159 (434)
T KOG1009|consen 105 ---------------------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLA--- 159 (434)
T ss_pred ---------------------hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEe---
Confidence 0011111122222347899999999999999999999 899999999994 44443
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccc-ceec---cccCCCc-cccccc--cccceE
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-KLFE---EQEAPGT-RSFFTE--IIASIS 345 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~---~~~~~~~-~~~~~~--h~~~i~ 345 (490)
.+.+|...+..++|.|-+ +++++-+.|...+.+++...+.....- ..+. .+..+.. ...+.. -..-.+
T Consensus 160 ----~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 160 ----ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ----eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 468899999999999998 999999999877777766543321100 0000 0000000 001110 112357
Q ss_pred EEEECCCCCEEEEEc-----C-----CeEEEEeccCCCCceeeeeeeccccc--cccccccCCCccceeeEEE-cCCCCE
Q 011257 346 DIKFARNGRHILSRD-----Y-----MTLKLWDINMDSGPVATFQVHEHLRP--KLCDLYENDSIFDKFECCL-SGDGGR 412 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~-----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~-s~d~~~ 412 (490)
.++|+|||.+|++.+ . +..++|+...-.++...+.......- ..+.++.+-+.......-| -|-+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 789999999999732 1 23455654432344444433222110 0011110000000001011 122334
Q ss_pred EEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 413 l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
+|.++. +.|+|||.++-+.....-..|-..++.++|++||...++++.++
T Consensus 315 faiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 315 FAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred EEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 555555 67999999988776667778999999999999999988887664
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=3.1e-19 Score=163.49 Aligned_cols=254 Identities=7% Similarity=0.082 Sum_probs=165.1
Q ss_pred cccEEEEEECCCCCEE-EEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 35 VDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~l-atg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
...+.+++|+|+|+.+ ++++.++.|++||..+++. ...+..+.
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------- 73 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-----------------------IGTLPSGP------------- 73 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-----------------------EEeccCCC-------------
Confidence 3457889999999876 5677889999999887652 12232222
Q ss_pred ceeEEEEeecCCCcEEEE-EeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~-~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+..++|+| +++.+++ +..|+.|++||+.+.+........ ..+..++|+|+|+
T Consensus 74 ~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~dg~-------- 127 (300)
T TIGR03866 74 DPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------------VEPEGMAVSPDGK-------- 127 (300)
T ss_pred CccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----------------CCcceEEECCCCC--------
Confidence 245678886 4555654 566899999999987654433221 1123689999998
Q ss_pred CCCCccccCCCCC-cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceee
Q 011257 193 ASNDSSFPPGGVS-SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 193 ~~~~~l~~~~~~g-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~ 269 (490)
+++++..++ .+.+|| ... ........ ....+..++|+|+++.|+.+ .++.|++||+++.. ...
T Consensus 128 ----~l~~~~~~~~~~~~~d-~~~------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~ 193 (300)
T TIGR03866 128 ----IVVNTSETTNMAHFID-TKT------YEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIK 193 (300)
T ss_pred ----EEEEEecCCCeEEEEe-CCC------CeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eee
Confidence 666666654 456667 211 11111111 12345678999999988654 59999999998543 333
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcE-EEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNM-LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
.+................++|+|++ +. +++.+.++.+.+||+++++.. ..+... ..+.+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~~-------------~~~~~~~ 255 (300)
T TIGR03866 194 KITFEIPGVHPEAVQPVGIKLTKDG-KTAFVALGPANRVAVVDAKTYEVL----DYLLVG-------------QRVWQLA 255 (300)
T ss_pred eeeecccccccccCCccceEECCCC-CEEEEEcCCCCeEEEEECCCCcEE----EEEEeC-------------CCcceEE
Confidence 2211100011111234578899999 55 444566778999999876542 222111 4588999
Q ss_pred ECCCCCEEEEE-c-CCeEEEEeccCCCCceeeeeeec
Q 011257 349 FARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 349 ~sp~g~~l~sg-~-d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
|+|+|++|+++ . ++.|.+||+++ ++.+..++...
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~~~ 291 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAA-LKVIKSIKVGR 291 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCC-CcEEEEEEccc
Confidence 99999999876 3 59999999997 88888887643
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2e-21 Score=188.11 Aligned_cols=194 Identities=17% Similarity=0.217 Sum_probs=153.7
Q ss_pred cccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeE
Q 011257 230 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 307 (490)
..|.+.|..+.|++.. ++||+| +||.|.+||+......+.. .-....+.|.+++|+..-..+|++++.+|++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 6788999999999975 499999 8999999999865544332 1122467899999998776899999999999
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC-EEEEE--cC--CeEEEEeccCCCCceeeeeee
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSR--DY--MTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~-~l~sg--~d--~~i~iwd~~~~~~~~~~~~~~ 382 (490)
.|||++..+.+ -.+..+.. ...+..++|+|+.. .|+++ +| -.|.+||++....+++++++|
T Consensus 187 ~iWDlr~~~pi----i~ls~~~~----------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPI----IKLSDTPG----------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCcc----cccccCCC----------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 99999987543 23333221 03478999999753 33333 44 789999999878899999999
Q ss_pred ccccccccccccCCCccceeeEEEcCCC-CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 383 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
... |.++.|.+.+ .+|++++.|+.|.+|+.++|+. +..+....+.+..+.|+|..+.+...
T Consensus 253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-l~~~p~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-LGELPAQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCceE-eeecCCCCcceeeeeecCCCcchhhh
Confidence 865 5699999965 8999999999999999999988 67888888999999999988854433
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=158.17 Aligned_cols=195 Identities=18% Similarity=0.319 Sum_probs=144.9
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCc
Q 011257 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (490)
Q Consensus 48 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~ 127 (490)
..+|++...|.|++||..+++ ++..+.++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 579999999999999999866 467788888 779999998643456
Q ss_pred EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcE
Q 011257 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (490)
Q Consensus 128 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v 207 (490)
.+.+++.||+|++||++.......+...
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---------------------------------------------------- 113 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWT---------------------------------------------------- 113 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheecc----------------------------------------------------
Confidence 8899999999999999876533321111
Q ss_pred EEeeeecccccccccceeeeeccccc-cceeEEEecCCCCEEEEe-----cCCcEEEEEcCCCCceeeeeecCCCccCCC
Q 011257 208 RLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (490)
Q Consensus 208 ~iw~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 281 (490)
.++ .+..+++.+..++++++| .+-.+.+||++...+.+.. -...|
T Consensus 114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH 164 (376)
T KOG1188|consen 114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESH 164 (376)
T ss_pred -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhc
Confidence 111 344566666667777775 3778999999977764443 24779
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC--CEEEEE
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSR 359 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g--~~l~sg 359 (490)
...|+++.|+|..+++|++|+.||.|.+||+.....-+..+.++. |...|..+.|+.++ +.....
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-------------~~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-------------HGSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-------------ccceeeeeeeecCCcceEEEEE
Confidence 999999999999999999999999999999987543222222222 23679999999877 544444
Q ss_pred cCCeEEEEeccC
Q 011257 360 DYMTLKLWDINM 371 (490)
Q Consensus 360 ~d~~i~iwd~~~ 371 (490)
...+..+|+++.
T Consensus 232 H~Etf~~~ele~ 243 (376)
T KOG1188|consen 232 HMETFAIYELED 243 (376)
T ss_pred ccCceeEEEccC
Confidence 568899999875
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.2e-20 Score=162.69 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=180.9
Q ss_pred cEEEEEECC-------CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 37 IISAIEFDK-------SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 37 ~V~~~~~s~-------dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.-.|++|.. -|+|+|.|+-|..|.|||+.-...+..... +.+...... .-..+.-...++|+
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~-LGs~~sk~~-~k~~k~~~~~~gHT--------- 243 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVT-LGSKASKKK-KKKGKRSNSASGHT--------- 243 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccccccee-echhhhhhh-hhhcccccccccch---------
Confidence 336667653 367999999999999999875432200000 000000000 00000001134566
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+.|.++.|+.. ..+.|++|+.|.+|++||+.+++++...
T Consensus 244 ---davl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~g~p~~s~------------------------------------- 282 (463)
T KOG0270|consen 244 ---DAVLALSWNRN-FRNVLASGSADKTVKLWDVDTGKPKSSI------------------------------------- 282 (463)
T ss_pred ---HHHHHHHhccc-cceeEEecCCCceEEEEEcCCCCcceeh-------------------------------------
Confidence 88999999853 3468999999999999999999865532
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCce
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
..|...|.++.|+|. ...|++| .|+++.+.|.+.....
T Consensus 283 ----------------------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 283 ----------------------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred ----------------------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc
Confidence 345678999999996 6778888 8999999999853332
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
-..+ ...+.|-.++|.|.....++++..||+++-+|+|... +++.++..|. ++|.+|
T Consensus 323 ~~~w--------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd------------~~ISgl 379 (463)
T KOG0270|consen 323 GKEW--------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHD------------DEISGL 379 (463)
T ss_pred CceE--------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEecc------------CCcceE
Confidence 2221 1257788999999988899999999999999999865 3356666665 899999
Q ss_pred EECCCCCEE-EEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-EEEEeecCCeEEE
Q 011257 348 KFARNGRHI-LSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRV 424 (490)
Q Consensus 348 ~~sp~g~~l-~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~v 424 (490)
++++.-..+ +++ .|+.|++|++.. ..+ .....|......+ .|.++.|+-. ++|.|+..+.++|
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred EecCCCCcceeeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEE
Confidence 999865554 455 579999999974 222 2222222211111 2666777544 5788888889999
Q ss_pred EecCCCcee
Q 011257 425 FGCSEGSAE 433 (490)
Q Consensus 425 w~~~~~~~~ 433 (490)
||+.+...+
T Consensus 446 wd~~~~~~V 454 (463)
T KOG0270|consen 446 WDIFTNSPV 454 (463)
T ss_pred eecccChhH
Confidence 999987653
No 154
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1e-19 Score=174.39 Aligned_cols=312 Identities=14% Similarity=0.223 Sum_probs=210.0
Q ss_pred cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecccee
Q 011257 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 116 (490)
+-..+.|+|-...+++++..-.|+|||.+.++.. ..|..+.+. ...|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~~---------~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAFP---------DTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCCC---------CCccc
Confidence 3567889998889999987779999999987743 333333321 15699
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCC---eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.+.+....+..++++|+.||.||||+-... +.+-+.....- .+...........+.|.....
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L------s~~~~~~r~~~~v~dWqQ~~G--------- 1178 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL------SDQLPGARGTGLVVDWQQQSG--------- 1178 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc------cccCccCCCCCeeeehhhhCC---------
Confidence 999987777789999999999999964322 22221111100 111111111122456655555
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+|+++|.-..|+||| .... .+......+....|+++.-+- .|+.+++| .||.|++||.+...+...+.
T Consensus 1179 ---~Ll~tGd~r~IRIWD-a~~E------~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1179 ---HLLVTGDVRSIRIWD-AHKE------QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred ---eEEecCCeeEEEEEe-cccc------eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 677777789999999 2211 111222234445666665433 47899999 99999999998655421111
Q ss_pred ecCCCccCCCCCc--eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 272 DVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 272 ~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
....|... |..+.+.+.|-..|++|+.||.|++||++..... . ..+...+.. ..+..+++..
T Consensus 1249 -----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~-~~~iv~~~~---------yGs~lTal~V 1312 (1387)
T KOG1517|consen 1249 -----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-T-FLTIVAHWE---------YGSALTALTV 1312 (1387)
T ss_pred -----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc-c-cceeeeccc---------cCccceeeee
Confidence 34567766 9999999988556999999999999999985211 1 111122111 0124899999
Q ss_pred CCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 350 sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
+++...+|+|+.+.|+||++. ++.+..++.+.... ...+..+.+++|+|-.-+||+|+.|..|.||....
T Consensus 1313 H~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1313 HEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccCCCeeeecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 999999999988999999997 77777766554322 12333456999999999999999999999999875
Q ss_pred Cc
Q 011257 430 GS 431 (490)
Q Consensus 430 ~~ 431 (490)
++
T Consensus 1383 ~~ 1384 (1387)
T KOG1517|consen 1383 PR 1384 (1387)
T ss_pred cC
Confidence 53
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=6.3e-21 Score=184.71 Aligned_cols=263 Identities=16% Similarity=0.270 Sum_probs=196.8
Q ss_pred cccccccccccEEEEEECCCCCE----EEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcc
Q 011257 27 TAGEEVQEVDIISAIEFDKSGDH----LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (490)
Q Consensus 27 ~~~~~~~h~~~V~~~~~s~dg~~----latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 102 (490)
.+...++-...-+.++|.+.|.. +|.|..||.|.+||...-.. .-....+..+..|+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~~~~~la~~~~h~-- 116 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NASEEVLATKSKHT-- 116 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------CcchHHHhhhcccC--
Confidence 34445556778899999997765 88899999999999875210 01223466778888
Q ss_pred cceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEecc
Q 011257 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (490)
Q Consensus 103 ~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 182 (490)
+.|..+.|++.. ++.|++|+.||.|.|||+...+.- |++.
T Consensus 117 ----------G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~tP-----------------------------~~~~ 156 (1049)
T KOG0307|consen 117 ----------GPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPETP-----------------------------FTPG 156 (1049)
T ss_pred ----------CceeeeeccccC-CceeeccCCCCcEEEeccCCcCCC-----------------------------CCCC
Confidence 999999999854 579999999999999999874310 0000
Q ss_pred CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEE
Q 011257 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWN 260 (490)
Q Consensus 183 g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd 260 (490)
+ ......|.+++|+.. ..+|+++ .+|.+.+||
T Consensus 157 ~----------------------------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 157 S----------------------------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred C----------------------------------------------CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 0 122367889999886 5567777 789999999
Q ss_pred cCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCccccccccceeccccCCCccccc
Q 011257 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (490)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (490)
++...+.+.+- .......+..++|+|+....+++++.|. .|.+||+|... .+++++++|
T Consensus 191 lr~~~pii~ls------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H--------- 252 (1049)
T KOG0307|consen 191 LRKKKPIIKLS------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGH--------- 252 (1049)
T ss_pred ccCCCcccccc------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---Cchhhhccc---------
Confidence 99766555431 1222345789999999878888888764 69999998643 335555555
Q ss_pred cccccceEEEEECCCC-CEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-EEE
Q 011257 338 TEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVA 414 (490)
Q Consensus 338 ~~h~~~i~~l~~sp~g-~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 414 (490)
...|.++.|++.+ ++|+++ -|+.|.+|+.++ ++.+..+.....+ ++.+.|.|... .++
T Consensus 253 ---~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW---------------~fdv~w~pr~P~~~A 313 (1049)
T KOG0307|consen 253 ---QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNW---------------CFDVQWCPRNPSVMA 313 (1049)
T ss_pred ---ccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcc---------------eeeeeecCCCcchhh
Confidence 4899999999955 777774 689999999998 8888888776655 45899999665 788
Q ss_pred EeecCCeEEEEecCCCc
Q 011257 415 TGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 415 s~~~dg~i~vw~~~~~~ 431 (490)
.++-||.|.||.+.+..
T Consensus 314 ~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 314 AASFDGKISIYSLQGTD 330 (1049)
T ss_pred hheeccceeeeeeecCC
Confidence 88899999999998765
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-19 Score=149.34 Aligned_cols=259 Identities=10% Similarity=0.146 Sum_probs=171.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC--eEEEEeeeccCCCcCCCCCCccccccccCceEEec--cCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~~~~ 188 (490)
+-|+++.|.+ .|+++++|+.|++++|||.+.. .......-.. +.+++. .+.|.+ -|+
T Consensus 14 DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra------h~~Si~-------rV~WAhPEfGq---- 74 (361)
T KOG2445|consen 14 DLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA------HDGSIW-------RVVWAHPEFGQ---- 74 (361)
T ss_pred ceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEe------cCCcEE-------EEEecCccccc----
Confidence 7899999985 6789999999999999997543 2222221111 122333 455532 244
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecc--cccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTS--QETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEI 263 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~ 263 (490)
.+++++.|+++.||. ... .+........++.+......|+++.|.|. |-.||++ .||.+++|+...
T Consensus 75 --------vvA~cS~Drtv~iWE-E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 75 --------VVATCSYDRTVSIWE-EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred --------eEEEEecCCceeeee-ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 789999999999998 321 11222233444445667789999999996 7778888 899999998764
Q ss_pred CCceeeeeecC------CCccCCCCCceEEEEEcCCC--CcEEEEEeCC-----CeEEEEeCCCccccccccceeccccC
Q 011257 264 SNQSFNIVDVK------PANMEDLTEVITSAEFHPTH--CNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 264 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.... ..+.+. +.....+..+..|+.|+|.. ..+||.|+.+ +.+.||....+......+..+.
T Consensus 146 p~nL-s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~---- 220 (361)
T KOG2445|consen 146 PMNL-SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP---- 220 (361)
T ss_pred cccc-ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC----
Confidence 3221 111100 01223456677899999742 2578888776 5788888776542222223333
Q ss_pred CCccccccccccceEEEEECCC----CCEEEEEc-CCeEEEEeccCCCC-------------------ceeeeeeecccc
Q 011257 331 PGTRSFFTEIIASISDIKFARN----GRHILSRD-YMTLKLWDINMDSG-------------------PVATFQVHEHLR 386 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~----g~~l~sg~-d~~i~iwd~~~~~~-------------------~~~~~~~~~~~~ 386 (490)
+|..+|++|+|.|+ -..||+++ || |+||.+..... .+..+..|..
T Consensus 221 --------d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-- 289 (361)
T KOG2445|consen 221 --------DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-- 289 (361)
T ss_pred --------CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC--
Confidence 45589999999994 24566664 57 99999973111 1112223332
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
.|+.+.|.-.|..|++.+.||.||+|...
T Consensus 290 -------------~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 290 -------------EVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -------------ceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 37899999999999999999999999875
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.8e-20 Score=161.72 Aligned_cols=289 Identities=12% Similarity=0.149 Sum_probs=196.2
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (490)
....|+++.+-+......... .-.+.+++|+.... .+|+.+.|..+++|.-.... |+..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-------------------~~Vp 72 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTA-EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-------------------PEVP 72 (673)
T ss_pred ceEEeecccccCccccccCCC-CCcceeeeccccceEEEeecCCceeEEEecccCCC-------------------Cccc
Confidence 356788887533322222111 12389999998764 23334577789999854431 1111
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
.+....+.. +..|.++.++ .++++|+..+.|+|||++...+.+...-+.. .+
T Consensus 73 ~~~k~~gd~-----------~~Cv~~~s~S-----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~s--------tv---- 124 (673)
T KOG4378|consen 73 RVRKLTGDN-----------AFCVACASQS-----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQS--------TV---- 124 (673)
T ss_pred eeeccccch-----------HHHHhhhhcc-----eeeeccCcCceeeehhhHHHHHhhhccCCcc--------ee----
Confidence 222233322 1334444443 5899999999999999996655444333321 11
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
..+.|.-.. +||++++..|.|.+..+...... ..+..+....|+-+.|+|..+.+++.
T Consensus 125 ---t~v~YN~~D------------eyiAsvs~gGdiiih~~~t~~~t-------t~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 125 ---TYVDYNNTD------------EYIASVSDGGDIIIHGTKTKQKT-------TTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred ---EEEEecCCc------------ceeEEeccCCcEEEEecccCccc-------cceecCCCCeEEEeecccccceeeEe
Confidence 133333333 38999999999999773222211 11223334567789999988877764
Q ss_pred --cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 252 --DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 252 --~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
++|.|.+||+....+.+. ....|..+...|+|+|..+.+|++.+.|..|.+||++..+.. ..+...
T Consensus 183 asd~G~VtlwDv~g~sp~~~-------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y~- 250 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFH-------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTYS- 250 (673)
T ss_pred eccCCeEEEEeccCCCcccc-------hhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc----ceeeec-
Confidence 899999999985555544 246799999999999998889999999999999999976543 233222
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
.+.+.++|+++|.+|++|+ .|.|..||++....++..+..|... |++++|-|
T Consensus 251 ------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~ 303 (673)
T KOG4378|consen 251 ------------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQP 303 (673)
T ss_pred ------------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeee
Confidence 5789999999999999995 5999999999878899999999876 56888877
Q ss_pred CC
Q 011257 409 DG 410 (490)
Q Consensus 409 d~ 410 (490)
..
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 64
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=150.19 Aligned_cols=290 Identities=14% Similarity=0.179 Sum_probs=192.7
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
.+++.|++ .|.+|++|+.||.|.+||+.+..+...+..+..+ ..+++||++|+
T Consensus 26 a~~~~Fs~--~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p---------------i~sl~WS~dgr---------- 78 (405)
T KOG1273|consen 26 AECCQFSR--WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP---------------ITSLCWSRDGR---------- 78 (405)
T ss_pred cceEEecc--CcceeeeeccCCcEEEEEccccchhhhhhccccc---------------eeEEEecCCCC----------
Confidence 67899986 6779999999999999999998765554444221 13899999999
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.|++++.|..+++||++.+. +.+.+ ....+|+...|+|. .+.+++-.+..-.+-++..... ..+.
T Consensus 79 --~LltsS~D~si~lwDl~~gs-------~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp 145 (405)
T KOG1273|consen 79 --KLLTSSRDWSIKLWDLLKGS-------PLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLP 145 (405)
T ss_pred --EeeeecCCceeEEEeccCCC-------ceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eecc
Confidence 89999999999999954443 22221 23478999999995 3334443344455555543221 1111
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
..+ -........+..|.+.| +++++|...|.+.+||..+-+.+ ..+.... ...|.++.|+..
T Consensus 146 ~d~--d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~v----as~rits-----------~~~IK~I~~s~~ 207 (405)
T KOG1273|consen 146 KDD--DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECV----ASFRITS-----------VQAIKQIIVSRK 207 (405)
T ss_pred CCC--ccccccccccccccCCC-CEEEEecCcceEEEEecchheee----eeeeech-----------heeeeEEEEecc
Confidence 100 00011222344688999 99999999999999999986543 2332221 146889999999
Q ss_pred CCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEEEEecCCC
Q 011257 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEG 430 (490)
Q Consensus 353 g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~~~ 430 (490)
|+.|+.- +|..||.|+++. -....-.+......++.++.+.-.. .+++||.||.|++.++. ...++||.-..|
T Consensus 208 g~~liiNtsDRvIR~ye~~d--i~~~~r~~e~e~~~K~qDvVNk~~W---k~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 208 GRFLIINTSDRVIRTYEISD--IDDEGRDGEVEPEHKLQDVVNKLQW---KKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred CcEEEEecCCceEEEEehhh--hcccCccCCcChhHHHHHHHhhhhh---hheeecCCccEEEeccccceeEEEEecCCc
Confidence 9999984 789999999862 0000000000111111122111112 27999999999988774 467999999999
Q ss_pred ceeeeEeccCC-CceEEEEEccCCCCCCCCccCcceecC
Q 011257 431 SAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 431 ~~~~~~~~~~~-~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
.. ++.+.+.+ .....+.|+|-.+..+..+.+....|.
T Consensus 283 sL-VKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 283 SL-VKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWA 320 (405)
T ss_pred ce-eeeecCCchhheeecccccceeeeeeccCCceEEEE
Confidence 87 68898888 678899999999887766544444444
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=146.49 Aligned_cols=299 Identities=11% Similarity=0.142 Sum_probs=196.4
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccccc-CCcccceeeeeee
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEI 111 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-h~~~~~~~~~~~~ 111 (490)
.|.+.|+|+.|..+++ |.+|..-|.|++|++++.+.. ..+.. |.
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g~----------- 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFGR----------- 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhcc-----------
Confidence 7899999999998874 889999999999999988743 33442 33
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|+.+.-.| +..+.+-++|+.+.+|++..+....+.....+.-. ....++++.++.......
T Consensus 57 -~~it~lq~~p---~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg-------------FCrfSl~~~~k~~eqll~ 119 (323)
T KOG0322|consen 57 -LFITNLQSIP---NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG-------------FCRFSLVKKPKNSEQLLE 119 (323)
T ss_pred -ceeeceeecC---CcchhhcCCCceEEEEEccCcceEEEeeeeccccc-------------cccceeccCCCcchhhee
Confidence 5577777765 35799999999999999998766555443322100 001233344432100000
Q ss_pred cCCC--C--ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCC--EEEEe-cCCcEEEEEcCC
Q 011257 192 CASN--D--SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE--TFISA-DDLRINLWNLEI 263 (490)
Q Consensus 192 ~~~~--~--~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~--~l~~~-~d~~i~~wd~~~ 263 (490)
++.. + ...-++..-.+++-| .-..+..+.+.+..+.. ++. ++++| ++|.+.+||+..
T Consensus 120 yp~rgsde~h~~D~g~~tqv~i~d---------------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 120 YPSRGSDETHKQDGGDTTQVQIAD---------------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred cCCcccchhhhhccCccceeEccC---------------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 0000 0 001111111222211 00123345666666433 233 34457 899999999997
Q ss_pred CCceeeeeecCC--CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 264 SNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 264 ~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
+...+++-...+ .....|..+|.++.|.+.- ..=++|+.+..+..|.+.........-.......
T Consensus 185 ~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn------------ 251 (323)
T KOG0322|consen 185 GDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN------------ 251 (323)
T ss_pred CceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEecC------------
Confidence 655444322111 1345689999999999865 5667788888899998875421111011111111
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
..|..+..-||++.+|++. |++||||..++ ..++..++.|... |.+++|+|+..++|.++.|+
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsag---------------vn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAG---------------VNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcc---------------eeEEEeCCCCchhhhccCCc
Confidence 4688899999999999965 79999999998 9999999999876 45999999999999999999
Q ss_pred eEEEEec
Q 011257 421 LFRVFGC 427 (490)
Q Consensus 421 ~i~vw~~ 427 (490)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.3e-18 Score=149.43 Aligned_cols=297 Identities=18% Similarity=0.275 Sum_probs=196.6
Q ss_pred ccccccccccccccccccccEEEEEECC-----CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
+|..+||+...-++--..=.|+-+.|.. +.++||. +|+...+... .+..+.+.+.- . .-
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf--~ViPl~k~Gr~---d---~~ 73 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAF--LVIPLVKTGRM---D---AS 73 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcce--eeccccccccc---C---CC
Confidence 4556788777655555555777777765 4455554 3333333211 00000000000 0 01
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
.-.+.||+ ++|..+.|+|. ++..+++|+.|.+|.||++-.+-+.....
T Consensus 74 ~P~v~GHt------------~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHT------------APVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLT------------------- 121 (472)
T ss_pred CCCccCcc------------ccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcc-------------------
Confidence 23367898 99999999994 45789999999999999987653222100
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~ 251 (490)
+... .+.+|...|--++|+|. .+.|+++
T Consensus 122 --------------------------------------------------epvv-~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 122 --------------------------------------------------EPVV-ELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred --------------------------------------------------cceE-EEeecceeEEEEeecccchhhHhhc
Confidence 0111 14799999999999996 5566676
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.|.+|.+|++.++...+. +. |...|+++.|+.+| .+|++.+.|..|||||.++++.+. .-..|..
T Consensus 151 g~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~----e~~~heG 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVS----EGVAHEG 216 (472)
T ss_pred cCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEee----ecccccC
Confidence 899999999997766654 34 99999999999999 999999999999999999998642 2233331
Q ss_pred CCccccccccccceEEEEECCCCCEEEEE----cCCeEEEEeccCCCCce--eeeeeeccccccccccccCCCccceeeE
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
..-..+.|-.+|..+.+| ++.++.+||...-.+++ ..+....+ |.--
T Consensus 217 -----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG----------------vl~P 269 (472)
T KOG0303|consen 217 -----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG----------------VLLP 269 (472)
T ss_pred -----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc----------------eEEe
Confidence 223456677889866666 35899999987634443 33333333 3345
Q ss_pred EEcCCCCEEEE-eecCCeEEEEecCCCceeeeEecc--CCCceEEEEEccCCC
Q 011257 405 CLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRP 454 (490)
Q Consensus 405 ~~s~d~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~ 454 (490)
-|.+|.++|.. |-.|+.||.|.+.....-+..+.. ...+-+.+.|-|...
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc
Confidence 57888887654 457999999999987654444432 345667777777543
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.5e-19 Score=151.63 Aligned_cols=224 Identities=17% Similarity=0.219 Sum_probs=147.5
Q ss_pred cccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeE
Q 011257 230 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 307 (490)
.+|...|+.+.+.|+. ++++++ .|..|++|+++ ...++.++. ...+|...|.++.|+++| ..|++++.|.+|
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~VfG----G~egHrdeVLSvD~~~~g-d~i~ScGmDhsl 205 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVFG----GVEGHRDEVLSVDFSLDG-DRIASCGMDHSL 205 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEec----ccccccCcEEEEEEcCCC-CeeeccCCcceE
Confidence 6888999999999975 566777 89999999999 556666552 568999999999999999 899999999999
Q ss_pred EEEeCCCccccccc--cceeccc--cC--CCccc------cccccccceEEEEECCCCCEEEE-EcCCeEEEEeccCCCC
Q 011257 308 RLIDMRQSALCDTH--SKLFEEQ--EA--PGTRS------FFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSG 374 (490)
Q Consensus 308 ~iwd~~~~~~~~~~--~~~~~~~--~~--~~~~~------~~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~ 374 (490)
++|++...+..... ...+... .. |.+.. .-.-|...|-|+.|- |.++++ +.++.|..|..-.-.+
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e 283 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEE 283 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhh
Confidence 99999855322110 1111110 00 00001 123477888888886 688888 4568999998721122
Q ss_pred ceeeeeeeccccccccccccCCCcccee--eEEEcCCCCEEEEeecCCeEEEEecCCCcee-eeEe--ccCCCceEEEEE
Q 011257 375 PVATFQVHEHLRPKLCDLYENDSIFDKF--ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL--EASKNPMRRQVQ 449 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-~~~~--~~~~~~v~~~~~ 449 (490)
.+............+..+.- ...+++ ..+|.|-+++||.|...|.|.+||++..+.. ..++ ......|+..+|
T Consensus 284 ~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 284 SIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred hhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence 22222111111111111110 011233 4556667889999999999999999977652 2223 233467999999
Q ss_pred ccCCCCCCCCccCc
Q 011257 450 TPSRPSRPLGSLSG 463 (490)
Q Consensus 450 sp~~~~~~~~~~~~ 463 (490)
|-|+..+.....+.
T Consensus 362 S~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 362 SRDGSILVLVCDDG 375 (385)
T ss_pred cccCcEEEEEeCCC
Confidence 99998877665543
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.6e-19 Score=145.62 Aligned_cols=275 Identities=16% Similarity=0.197 Sum_probs=175.4
Q ss_pred ccccccccEEEEEECC-CCCEEEEecCC-------CcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCc
Q 011257 30 EEVQEVDIISAIEFDK-SGDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEP 101 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~-dg~~latg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~ 101 (490)
....|.+.|..++-+| |...|+|+..+ -.+.||.+....... -+.....+..+..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--------------~~~tlE~v~~Ldt--- 120 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--------------NSSTLECVASLDT--- 120 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--------------ccchhhHhhcCCH---
Confidence 3456889999999999 56678877543 247789986543110 0000111122210
Q ss_pred ccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec
Q 011257 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (490)
Q Consensus 102 ~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 181 (490)
++-+.|.||.|.| ++..+++-. |..|.+|+++.+.... ....
T Consensus 121 --------eavg~i~cvew~P--ns~klasm~-dn~i~l~~l~ess~~v-aev~-------------------------- 162 (370)
T KOG1007|consen 121 --------EAVGKINCVEWEP--NSDKLASMD-DNNIVLWSLDESSKIV-AEVL-------------------------- 162 (370)
T ss_pred --------HHhCceeeEEEcC--CCCeeEEec-cCceEEEEcccCcchh-eeec--------------------------
Confidence 1126799999998 444666655 8899999998765321 1110
Q ss_pred cCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEEEEecCCcEEEE
Q 011257 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISADDLRINLW 259 (490)
Q Consensus 182 ~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~d~~i~~w 259 (490)
..++ ..+.....+-+|+| +++.+++..|+++..|
T Consensus 163 -----------------ss~s---------------------------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~ 198 (370)
T KOG1007|consen 163 -----------------SSES---------------------------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFW 198 (370)
T ss_pred -----------------cccc---------------------------ccccceecccccCCCCccceEEEeCCCcEEEE
Confidence 0000 12234456677888 6888998899999999
Q ss_pred EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
|+++..+...+ -..|...|..+.|+|+...+|++|+.||.|++||.+..+. ++..+.+
T Consensus 199 D~RT~~~~~sI-------~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~------------ 256 (370)
T KOG1007|consen 199 DLRTMKKNNSI-------EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPG------------ 256 (370)
T ss_pred Eccchhhhcch-------hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCC------------
Confidence 99966655443 3678889999999999878899999999999999997543 2455544
Q ss_pred cccceEEEEECCC-CCEEEEE-cCCeEEEEeccCCCCceee--------eeeecc--ccccccc----cc--cCCCccce
Q 011257 340 IIASISDIKFARN-GRHILSR-DYMTLKLWDINMDSGPVAT--------FQVHEH--LRPKLCD----LY--ENDSIFDK 401 (490)
Q Consensus 340 h~~~i~~l~~sp~-g~~l~sg-~d~~i~iwd~~~~~~~~~~--------~~~~~~--~~~~~~~----~~--~~~~~~~v 401 (490)
|...|.++.|+|. .++|++| +|..|.+|-...-....+. ...+.. ....+.+ -| +++. |
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS---V 333 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS---V 333 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc---e
Confidence 4589999999994 4455565 7899999976531100000 000000 0000111 01 1222 5
Q ss_pred eeEEEcCCCCE-EEEeecCCeEEEEecC
Q 011257 402 FECCLSGDGGR-VATGSYSNLFRVFGCS 428 (490)
Q Consensus 402 ~~~~~s~d~~~-l~s~~~dg~i~vw~~~ 428 (490)
.+++||.-..+ +|+-+.||.+.|=++.
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCC
Confidence 69999986554 6788899999887665
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=8.8e-19 Score=160.21 Aligned_cols=275 Identities=14% Similarity=0.196 Sum_probs=199.2
Q ss_pred cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecccee
Q 011257 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 116 (490)
.|..++|-|||..|+.+.. ..+.+||...+. .+.++.+|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~-----------------------llqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT-----------------------LLQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc-----------------------ccccccccc------------ceEE
Confidence 7999999999998887754 489999998776 467899999 8899
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
+++|+ .+|.+|++|+.|..|.+|+-.-... .+..-. ....+|.|.|-.+
T Consensus 58 cVAys--~dGkrFASG~aDK~VI~W~~klEG~---LkYSH~--------------D~IQCMsFNP~~h------------ 106 (1081)
T KOG1538|consen 58 CVAYA--KDGKRFASGSADKSVIIWTSKLEGI---LKYSHN--------------DAIQCMSFNPITH------------ 106 (1081)
T ss_pred EEEEc--cCCceeccCCCceeEEEecccccce---eeeccC--------------CeeeEeecCchHH------------
Confidence 99998 5889999999999999998653222 111100 1223788888776
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
.+++++- ...-+|. .+.....+ ......+.+.+|..||++|+.| .+|+|.+-+-. ++....+-
T Consensus 107 ~LasCsL-sdFglWS----~~qK~V~K------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~---- 170 (1081)
T KOG1538|consen 107 QLASCSL-SDFGLWS----PEQKSVSK------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIE---- 170 (1081)
T ss_pred Hhhhcch-hhccccC----hhhhhHHh------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEe----
Confidence 4444432 3445565 22111111 1223567889999999999999 99999998755 44333321
Q ss_pred CccCCCCCceEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 276 ANMEDLTEVITSAEFHPTHC----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.-.+..++|++++|+|... ..++......++.+|.+.... +.+ -+++. -...|+.+-+
T Consensus 171 -Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-Igk-~r~L~---------------FdP~CisYf~ 232 (1081)
T KOG1538|consen 171 -RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-IGK-DRALN---------------FDPCCISYFT 232 (1081)
T ss_pred -CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-ecc-cccCC---------------CCchhheecc
Confidence 3355688999999999642 578888888899988876532 211 11111 2246788999
Q ss_pred CCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 352 ~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
+|.|++.| +|+.+.+|-.+ +-.+.++-....+ ||.++..|++++++.|+.||+|.-|++..
T Consensus 233 NGEy~LiGGsdk~L~~fTR~--GvrLGTvg~~D~W---------------IWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRD--GVRLGTVGEQDSW---------------IWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCcEEEEccCCCceEEEeec--CeEEeecccccee---------------EEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 99999986 78999999875 6666666554444 78999999999999999999999998754
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=2.6e-19 Score=162.80 Aligned_cols=282 Identities=12% Similarity=0.121 Sum_probs=175.6
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|...|..+.|-|-...|++++.|.++++||+.+.+..+ ...+.||+
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------------------~~~~~GH~---------- 144 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------------------GRLNLGHT---------- 144 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------------ceeecccc----------
Confidence 45799999999999966789999999999999999877431 12367888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCC--ccccccccCceEEeccCCccc-
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP--IFGSHVSAIPKSYMANGGCGE- 187 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~~~- 187 (490)
..|.+++|.| .+...|++|+.||.|.|||++-.......... ......+++. ...+... ..-.+-..+..+.
T Consensus 145 --~SvkS~cf~~-~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~-~~~~~~~n~~ptpskp~~k-r~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 145 --GSVKSECFMP-TNPAVFCTGGRDGEILLWDCRCNGVDALEEFD-NRIYGRHNTAPTPSKPLKK-RIRKWKAASNTIFS 219 (720)
T ss_pred --cccchhhhcc-CCCcceeeccCCCcEEEEEEeccchhhHHHHh-hhhhccccCCCCCCchhhc-cccccccccCceee
Confidence 8899999998 44578999999999999999754421111100 0000000000 0000000 0000000011111
Q ss_pred --cccccCCCCccccCCC-CCcEEEeeeecccccccccceeeee-cccc---ccceeEEEecCCCCEEEEe-cCCcEEEE
Q 011257 188 --RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIY-AHAH---DYHINSISNNSDGETFISA-DDLRINLW 259 (490)
Q Consensus 188 --~~~~~~~~~~l~~~~~-~g~v~iw~~~~~~~~~~~~~~~~~~-~~~~---~~~v~~i~~~~~~~~l~~~-~d~~i~~w 259 (490)
....+.+++.|++++. |+.|++|| +.........+..... ...| ...+.++.....|.+|.+. .|+.|++|
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWD-LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWD-LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEe-ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence 1222344557887776 99999999 4443333332222211 0222 3456677777778877765 99999999
Q ss_pred EcCCCCceeeeeecCCCccCCCCCc--eEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccc
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (490)
++......... .+.++... -..-..+|++ ..+++|+.|...++|.+.+.+.- ... +
T Consensus 299 nm~s~s~sP~~------~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~~---~~~------------l 356 (720)
T KOG0321|consen 299 NMRSLSISPVA------EFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEAP---PAL------------L 356 (720)
T ss_pred eccccCcCchh------hccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCccCC---hhh------------h
Confidence 99854432111 12222111 1123468999 99999999999999999875432 233 4
Q ss_pred cccccceEEEEECC--CCCEEEEEcCCeEEEEeccC
Q 011257 338 TEIIASISDIKFAR--NGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 338 ~~h~~~i~~l~~sp--~g~~l~sg~d~~i~iwd~~~ 371 (490)
.+|...|++++|.| ....+.+.+|.+++||++..
T Consensus 357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred hCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 55568899999988 44554454569999999965
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2e-19 Score=150.83 Aligned_cols=266 Identities=15% Similarity=0.232 Sum_probs=180.0
Q ss_pred cccccEEEEEECCC----CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 33 ~h~~~V~~~~~s~d----g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
.|.+....++|+-| ..+||.|+.-|.|+|.|+.+++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 46777888888764 34899999999999999988774 35678888
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..|+.+.|+|. +.+++++++.|..||+|++++..+..++..
T Consensus 136 ----~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 88999999994 357999999999999999999887664331
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
..+|.+.|.++.|+++|.+++++ .|..+++|++....-.
T Consensus 177 ----------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 177 ----------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ----------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 25777888888888888888887 7888888888732100
Q ss_pred --eee------------eecC----CC--ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 268 --FNI------------VDVK----PA--NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 268 --~~~------------~~~~----~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
++. +..+ |. +-.-|...|.|+.|-- +++++=+-++.|..|....-+.. +.....
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~---~~~vkp 290 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEES---IHNVKP 290 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhh---hhccCC
Confidence 000 0000 00 2234777788888764 57888888999999987321110 011100
Q ss_pred ccCC-CccccccccccceEEE--EECCCCCEEEEEcC-CeEEEEeccCCCCce--eeeeeeccccccccccccCCCccce
Q 011257 328 QEAP-GTRSFFTEIIASISDI--KFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 328 ~~~~-~~~~~~~~h~~~i~~l--~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
.+.. .....+.-....|+-+ +|.|-++.||.|.. |.|.+||++. ..+. .++..+... ..|
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~~-------------~tV 356 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKSG-------------STV 356 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEecccc-------------cee
Confidence 0000 0000011111344444 55678899999866 9999999996 4442 222222111 115
Q ss_pred eeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 402 FECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
...+||.||.+|+..++|+.|.-||..
T Consensus 357 RQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 357 RQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeecccCcEEEEEeCCCcEEEEEee
Confidence 689999999999999999999999864
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=1.3e-18 Score=143.63 Aligned_cols=189 Identities=12% Similarity=0.196 Sum_probs=141.9
Q ss_pred ccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCc-eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeE
Q 011257 231 AHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (490)
Q Consensus 231 ~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 307 (490)
.+..+++++.|+. +-+++.++ -|-+..+||++++.. ..+. ++..|...|..++|...+..+||+.+.||.+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGSv 221 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGSV 221 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCcE
Confidence 3446888999987 45566666 699999999996511 1121 4678999999999999877899999999999
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEECC-CCCEEEE-EcC-CeEEEEeccCCCCceeeeeeecc
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~s-g~d-~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
|++|++..+-- .-.++.... ..+...++|++ |-+|+|+ +.| ..|.|.|++.+..++..+++|..
T Consensus 222 RmFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a 288 (364)
T KOG0290|consen 222 RMFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA 288 (364)
T ss_pred EEEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc
Confidence 99999975421 122222211 15788899998 5677777 445 89999999999999999999998
Q ss_pred ccccccccccCCCccceeeEEEcCC-CCEEEEeecCCeEEEEecCCCce-----eeeEeccCCCceEEEEEccCCC
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSA-----ESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
.+ ..++|.|. ...|+++++|..+.+||+...-. .+..+. ....|+.+.|+|..+
T Consensus 289 ~V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 289 SV---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred cc---------------cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCC
Confidence 74 49999995 56899999999999999985321 112222 345688999998665
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.8e-18 Score=148.55 Aligned_cols=310 Identities=12% Similarity=0.084 Sum_probs=210.1
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...+|.+.|.++.||.++++||+|+.|..+++|+++..-... ..+.+ .+.+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-----------------~~KPI-~~~~~~--------- 103 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-----------------TPKPI-GVMEHP--------- 103 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------CCCCc-eeccCc---------
Confidence 456799999999999999999999999999999987432100 00011 122222
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
|...|.+++|.. ....+++|..+++|.+.|+++.+...+....
T Consensus 104 -H~SNIF~L~F~~--~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~---------------------------------- 146 (609)
T KOG4227|consen 104 -HRSNIFSLEFDL--ENRFLYSGERWGTVIKHDIETKQSIYVANEN---------------------------------- 146 (609)
T ss_pred -cccceEEEEEcc--CCeeEecCCCcceeEeeecccceeeeeeccc----------------------------------
Confidence 237799999984 4568899999999999999987644432211
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
...+.|..+..+|-.+.|++. .++.|.+||.+......
T Consensus 147 -----------------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 147 -----------------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred -----------------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 112567888889988888888 89999999998554333
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
..+ -+.........+.|+|..+.+|++.+..+-+-+||++..... +....+... +......-+++.
T Consensus 186 ~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~~------L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 186 SLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFKG------LPQENTEWMGSL 251 (609)
T ss_pred cee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhcccc------Ccccchhhhhee
Confidence 221 122335567889999999899999999999999999875421 222222110 000012236788
Q ss_pred ECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 349 ~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
|+|.|..+.+--. ..-.+||+-. +.+..++...... .+.+... +.+++|-.|.. +++|+++=.|++|.+
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S--~R~~V~k~D~N~~----GY~N~~T---~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFIS--QRCFVLKSDHNPN----GYCNIKT---IKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeec--ccceeEeccCCCC----cceeeee---eeeeeeeccee-eeccCcccceEEEec
Confidence 9999998887543 4456778874 2233333221110 0011111 34888885544 999999999999998
Q ss_pred CCCc----------------------eeeeEeccCCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 428 SEGS----------------------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 428 ~~~~----------------------~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
.... ..+.++++|.+.++.+.|+|...+...++..+....+
T Consensus 322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 5310 1257899999999999999999888777776665544
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=1.6e-18 Score=163.52 Aligned_cols=287 Identities=14% Similarity=0.198 Sum_probs=191.3
Q ss_pred cccccccccccccccccccccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (490)
.-+.|++.+- ..+...+.-...|+|++|+| +..+||.|..+|.|.+||+..+.... -..
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------------~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------------PSG 282 (555)
T ss_pred eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------------Ccc
Confidence 5677998873 33433445578999999999 67789999999999999998766320 000
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEE-EeeeccCCCcCCCCCCcccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGS 170 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (490)
.-.....|. .+++.+.|..+..+.-|++++.||.|..|+++.-.... ....... ...+.-...
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~----~~~~~~~~~ 346 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK----KHKGQQSSK 346 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc----ccccccccc
Confidence 111123455 88999999986665679999999999999876543211 1100000 001111111
Q ss_pred ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeeccccccc--ccceeeeeccccccceeEEEecCCCCEE
Q 011257 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGETF 248 (490)
Q Consensus 171 ~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l 248 (490)
......++|.+... +.+++|+..|.|.--. ..+..... ..+....+ ..|.+.|.++.++|=+..+
T Consensus 347 ~~~~t~~~F~~~~p-----------~~FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 347 AVGATSLKFEPTDP-----------NHFIVGTEEGKVYKGC-RKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred ccceeeEeeccCCC-----------ceEEEEcCCcEEEEEe-ccCCcccccccccccccc-cccCcceEeeecCCCccce
Confidence 22223566655544 3788999999887622 11111111 11222222 6788999999999976655
Q ss_pred EE-ecCCcEEEEEcC-CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 249 IS-ADDLRINLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 249 ~~-~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
+. +.|.++++|.-. .....+ .+..+...|++++|||..+.+|+++..||.|.+||+..... .++....
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--~Pv~s~~ 483 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--EPVLSQK 483 (555)
T ss_pred eeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--CCccccc
Confidence 55 489999999877 333332 34556777999999999989999999999999999986532 2222222
Q ss_pred cccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEecc
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~ 370 (490)
.. ....+.+.|+++|+.|+.|++ |++.+|++.
T Consensus 484 ~~------------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 VC------------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cc------------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 21 256788889999999999987 999999995
No 169
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=152.03 Aligned_cols=226 Identities=14% Similarity=0.177 Sum_probs=162.8
Q ss_pred CCccccCCCCCcEEEeeeecccccccccce-------------eeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEE
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGC-------------RRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLW 259 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~w 259 (490)
++|++.|+.+..|.|||+.......+.... ......+|+..|.+++|+.. .+.||+| .|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 569999999999999994222211111000 00111478889999999886 5678888 89999999
Q ss_pred EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
|+.+++.. . .+..|...|.++.|+|..+.+|++|+.|+++.+.|+|..... -+.+...
T Consensus 272 D~~~g~p~-~-------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s---~~~wk~~----------- 329 (463)
T KOG0270|consen 272 DVDTGKPK-S-------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS---GKEWKFD----------- 329 (463)
T ss_pred EcCCCCcc-e-------ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---CceEEec-----------
Confidence 99955543 3 356789999999999999899999999999999999953211 1223222
Q ss_pred cccceEEEEECCCCCE-EEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC-CCEEEEe
Q 011257 340 IIASISDIKFARNGRH-ILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATG 416 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~-l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~ 416 (490)
+.|-.++|.|.... ++++ .||+++-+|++.+++++.+++.|...+ .++++++. ..+|+++
T Consensus 330 --g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I---------------Sgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 330 --GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI---------------SGLSVNIQTPGLLSTA 392 (463)
T ss_pred --cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc---------------ceEEecCCCCcceeec
Confidence 57999999996554 4445 459999999999889999999999874 48888774 4578999
Q ss_pred ecCCeEEEEecCCCceeeeEeccCC---CceEEEEEccCCCCCCCCcc
Q 011257 417 SYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 417 ~~dg~i~vw~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~~~~~~~ 461 (490)
+.|+.|++|++..... .....|. +...+.++.|+-+.....+.
T Consensus 393 s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred cccceEEEEeecCCCC--cccccccccccceeecccCCCcceEEEecC
Confidence 9999999999985443 1222232 33556667776665544433
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.9e-19 Score=158.04 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=192.3
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|+.++|.|....|++++.||.+++|+++..... -.-+...+.+|.+|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4568999999999999999999999999999999442110 001233466788898
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
++|.|++..+ ++..+++|+.||+|+.|++-... . |+..
T Consensus 345 --gPVl~v~v~~--n~~~~ysgg~Dg~I~~w~~p~n~-d-------------------------------p~ds------ 382 (577)
T KOG0642|consen 345 --GPVLCVVVPS--NGEHCYSGGIDGTIRCWNLPPNQ-D-------------------------------PDDS------ 382 (577)
T ss_pred --CceEEEEecC--CceEEEeeccCceeeeeccCCCC-C-------------------------------cccc------
Confidence 9999999985 67899999999999999876211 0 0000
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.+. ......+.||.+.|+.+++++....|+++ .||++++|+......+
T Consensus 383 -------------------------~dp----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-- 431 (577)
T KOG0642|consen 383 -------------------------YDP----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-- 431 (577)
T ss_pred -------------------------cCc----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc--
Confidence 000 00111147999999999999998899999 8999999998744431
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
++ ......+...++.+-.......++...-+.--++++..... +..+.....+.+.. ...+..+.+
T Consensus 432 ~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~~-----~~~in~vVs 497 (577)
T KOG0642|consen 432 TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPRR-----YPQINKVVS 497 (577)
T ss_pred cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCcccc-----cCccceEEe
Confidence 11 11222344566666554322333333333333334333221 23333322221111 135777889
Q ss_pred CCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
+|.+...+++ .|+.|+++|..+ +.++.....|... |+++++.|+|.+|++++.||.+++|.+.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~s---------------vtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDS---------------VTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cCCCCeeEecccCCceecccccc-cccchheeeccce---------------ecceeecCCCceEEeecCCceeehhhcc
Confidence 9988888887 569999999998 9999999888876 4599999999999999999999999998
Q ss_pred CCceeeeEeccC
Q 011257 429 EGSAESTTLEAS 440 (490)
Q Consensus 429 ~~~~~~~~~~~~ 440 (490)
...+ .....+|
T Consensus 562 ~k~~-~~es~~~ 572 (577)
T KOG0642|consen 562 VKTC-VLESTAH 572 (577)
T ss_pred chhe-eeccccc
Confidence 7666 3344444
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=2.6e-16 Score=145.51 Aligned_cols=261 Identities=11% Similarity=0.117 Sum_probs=155.4
Q ss_pred cceeEEEEeecCCCcEEEEE-eCcCeEEEEEcc-CCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 113 EKINKIRWCQSANSALYLLS-TNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~-~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+....++++| ++++|+++ ..++.|.+|++. ++.+......... ..+..++++|+|+
T Consensus 35 ~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~--------------~~p~~i~~~~~g~------ 92 (330)
T PRK11028 35 GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP--------------GSPTHISTDHQGR------ 92 (330)
T ss_pred CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--------------CCceEEEECCCCC------
Confidence 3466788987 56677665 458899999997 3444332222110 1233789999999
Q ss_pred ccCCCCccccC-CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~-~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~ 267 (490)
+++++ ..++.+.+|++... .. ........ .+......++++|++++++++ .++.|.+||+...+..
T Consensus 93 ------~l~v~~~~~~~v~v~~~~~~--g~-~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 93 ------FLFSASYNANCVSVSPLDKD--GI-PVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred ------EEEEEEcCCCeEEEEEECCC--CC-CCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 45544 45889999983211 11 11111111 122345678899999998765 6899999999853322
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
.... ........ ......++|+|++ ++++++.. +++|.+||+.......+.+..+...... . .+......
T Consensus 162 ~~~~-~~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-----~-~~~~~~~~ 232 (330)
T PRK11028 162 VAQE-PAEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-----F-SDTRWAAD 232 (330)
T ss_pred cccC-CCceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-----C-CCCcccee
Confidence 1000 00001111 2345789999999 77766665 9999999997421110111222111000 0 00123346
Q ss_pred EEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEE
Q 011257 347 IKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFR 423 (490)
Q Consensus 347 l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~ 423 (490)
+.++|+|++++++. ++.|.+|+++..+.. ..+..+..... . ...+.|+|||++|+++.. ++.|.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~---------~---p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTET---------Q---PRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccc---------c---CCceEECCCCCEEEEEEccCCcEE
Confidence 89999999999873 489999999753322 22333221100 0 137899999999998775 89999
Q ss_pred EEecC
Q 011257 424 VFGCS 428 (490)
Q Consensus 424 vw~~~ 428 (490)
+|+++
T Consensus 300 v~~~~ 304 (330)
T PRK11028 300 VYEID 304 (330)
T ss_pred EEEEc
Confidence 99885
No 172
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.7e-17 Score=157.38 Aligned_cols=245 Identities=16% Similarity=0.266 Sum_probs=174.6
Q ss_pred cccc-ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 30 EEVQ-EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 30 ~~~~-h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
+.+. +...|.+++.. +.+|++|+.+++|.+|....++.- ..+...+
T Consensus 50 ~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~-----------------------~iL~Rft-------- 96 (933)
T KOG1274|consen 50 ETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEED-----------------------TILARFT-------- 96 (933)
T ss_pred chhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcc-----------------------ceeeeee--------
Confidence 3344 78888888865 459999999999999998876521 1222223
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
-++++++|+ .+|++++.|+.|-.|++-++.+...+..
T Consensus 97 ----lp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~------------------------------------- 133 (933)
T KOG1274|consen 97 ----LPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKV------------------------------------- 133 (933)
T ss_pred ----ccceEEEEe--cCCcEEEeecCceeEEEEeccccchhee-------------------------------------
Confidence 568889998 5788999999999999988876542221
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
+.+|..+|.++.|+|.+++||+. -||.|++||+......
T Consensus 134 ----------------------------------------lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 134 ----------------------------------------LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred ----------------------------------------ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 36888999999999999999999 8999999999854433
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
..+-.+.+..-......+..++|+|++ ..|+....|+.|++|+....+.. ..+.... +...+..+
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~----f~Lr~~~----------~ss~~~~~ 238 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQ----FKLRDKL----------SSSKFSDL 238 (933)
T ss_pred hhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeh----eeecccc----------cccceEEE
Confidence 222111111111124567789999998 78888899999999998887642 3343322 22458999
Q ss_pred EECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 348 ~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
.|+|+|+|||+++ +|.|.|||.++ -.. |... ..|++++|.|+.+-|-.-...|...+|
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t-~~~------~~~~-------------~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT-HER------HEFK-------------RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc-chh------cccc-------------ceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999985 69999999985 111 2221 115689999988866544444444333
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.1e-17 Score=131.45 Aligned_cols=262 Identities=15% Similarity=0.172 Sum_probs=176.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
..|.+-+++|.+++|++|..+|.|.+..+...... -+..|....+...++|+ ++|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 45677789999999999999999999998754311 01112222344458888 999
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
+.++|. + .+|++++ ||.|+-|.........
T Consensus 66 y~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es~--------------------------------------------- 95 (325)
T KOG0649|consen 66 YYLAFH---D-DFLLSGG-DGLVYGWEWNEEEESL--------------------------------------------- 95 (325)
T ss_pred eeeeee---h-hheeecc-CceEEEeeehhhhhhc---------------------------------------------
Confidence 999996 2 4566665 5999999876542110
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
++=++|.+....... ...-..|+++.+.|..+.++.+ .|+.++.||++++. ..+
T Consensus 96 ---------~~K~lwe~~~P~~~~----------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r----- 150 (325)
T KOG0649|consen 96 ---------ATKRLWEVKIPMQVD----------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQR----- 150 (325)
T ss_pred ---------cchhhhhhcCccccC----------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEE-----
Confidence 001222211111100 0111567889999876666665 99999999999544 433
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc-cceEEEEECCCC
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNG 353 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~l~~sp~g 353 (490)
.+.+|++.|.+++--... ..+++|+.||++|+||+++.+.. ..+.....+ +.+..|. ..|.+++.+ .
T Consensus 151 --~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~---~~lRp~~g~wigala~~--e 218 (325)
T KOG0649|consen 151 --EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNP---NLLRPDWGKWIGALAVN--E 218 (325)
T ss_pred --EEcCCcceeeeeeecccC-cceeecCCCccEEEEecccccee----EEeccccCh---hhcCcccCceeEEEecc--C
Confidence 578999999999885444 58999999999999999998642 343332221 1222222 357777764 6
Q ss_pred CEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 354 ~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
.+|++|....+.+|.++. .++...+..... |..+.|- .+.+++++..+.|.-|.+.
T Consensus 219 dWlvCGgGp~lslwhLrs-se~t~vfpipa~----------------v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 219 DWLVCGGGPKLSLWHLRS-SESTCVFPIPAR----------------VHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ceEEecCCCceeEEeccC-CCceEEEecccc----------------eeEeeee--cceEEEeccccceeeeeec
Confidence 799999888999999997 777776654433 2356674 4567778888899999887
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=2e-17 Score=136.50 Aligned_cols=195 Identities=19% Similarity=0.270 Sum_probs=148.5
Q ss_pred ccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC--CCCcEEEEEeCCCeEE
Q 011257 231 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIR 308 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~ 308 (490)
.+-+.|.|+.|.|++..+++-.|..|.+|++.........+..+ .-.++....++-+|+| ++ +.+++ ..|+++.
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdg-nqv~t-t~d~tl~ 196 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDG-NQVAT-TSDSTLQ 196 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccc--ccccccceecccccCCCCcc-ceEEE-eCCCcEE
Confidence 33458899999999999998889999999998665533332211 2233667788999999 44 56665 5788999
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEE-EEc-CCeEEEEeccCCCCceeeeeeecccc
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~-sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
.||+++.... ..+. ..|...|+.+.|.|+.++++ +++ ||.|+|||.++...+++.+.+|..+
T Consensus 197 ~~D~RT~~~~----~sI~-----------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW- 260 (370)
T KOG1007|consen 197 FWDLRTMKKN----NSIE-----------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW- 260 (370)
T ss_pred EEEccchhhh----cchh-----------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-
Confidence 9999975432 1111 23457899999999877655 554 5999999999888999999999998
Q ss_pred ccccccccCCCccceeeEEEcCC-CCEEEEeecCCeEEEEecCCCc----------------------------eeeeEe
Q 011257 387 PKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGS----------------------------AESTTL 437 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~----------------------------~~~~~~ 437 (490)
|+++.|.|. .++|++|+.|..|.+|...+-. -.+.++
T Consensus 261 --------------vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 261 --------------VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred --------------EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 789999995 5678899999999999764311 124577
Q ss_pred ccCCCceEEEEEccCCCCCCCC
Q 011257 438 EASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 438 ~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
..|.+.|++++||...|....+
T Consensus 327 dehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred cccccceEEEeeccCCCeeEEE
Confidence 8899999999999988876644
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=8.7e-18 Score=150.01 Aligned_cols=273 Identities=11% Similarity=0.140 Sum_probs=180.8
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|...|.|+.|+.....+.+++.+..++-||+.+.... . +...|++. ...+ |.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~-----------~~~p~df~-pt~~--h~------------ 64 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-V-----------AKLPDDFV-PTDM--HL------------ 64 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhh-h-----------hhCCcccC-Cccc--cc------------
Confidence 57788899999998877777766655555665543311 0 00001110 0000 00
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
. ...--.....+.|+.++.||.+.+.+-...-...+..+ .+.+ .+-.|+|||.
T Consensus 65 ~---~rs~~~g~~~d~~~i~s~DGkf~il~k~~rVE~sv~AH---------~~A~-------~~gRW~~dGt-------- 117 (737)
T KOG1524|consen 65 G---GRSSGGGKGSDTLLICSNDGRFVILNKSARVERSISAH---------AAAI-------SSGRWSPDGA-------- 117 (737)
T ss_pred c---ccccCCCCCcceEEEEcCCceEEEecccchhhhhhhhh---------hhhh-------hhcccCCCCc--------
Confidence 0 00000011234788899999998887543321111111 1222 2667999999
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
-|+++++||.|++|. ..+..... ......+|.|++|.|+.+.++.+..+.+.+=.+......+
T Consensus 118 ----gLlt~GEDG~iKiWS----rsGMLRSt-----l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i---- 180 (737)
T KOG1524|consen 118 ----GLLTAGEDGVIKIWS----RSGMLRST-----VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII---- 180 (737)
T ss_pred ----eeeeecCCceEEEEe----ccchHHHH-----HhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee----
Confidence 689999999999998 22222221 1334478999999999999888877777777666444443
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
....|.+-|.++.|+|.. +++++|+.|-..++||..... +.+-..| ..+|++++|.|+
T Consensus 181 ----~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~~-----Lf~S~~~------------ey~ITSva~npd 238 (737)
T KOG1524|consen 181 ----RWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGAN-----LFTSAAE------------EYAITSVAFNPE 238 (737)
T ss_pred ----EEeccCcEEEEeecCccc-cceeecCCceeEEeecccCcc-----cccCChh------------ccceeeeeeccc
Confidence 467899999999999998 999999999999999976532 2333333 378999999999
Q ss_pred CCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 353 g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+.++.++.+++++=..+. + .|+.++||+||..++.|+..|.+.+=.
T Consensus 239 -~~~~v~S~nt~R~~~p~~------------G---------------SifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 239 -KDYLLWSYNTARFSSPRV------------G---------------SIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred -cceeeeeeeeeeecCCCc------------c---------------ceEEEEEcCCCceeeccccCceEEEee
Confidence 777778877777322221 1 156999999999999999999876543
No 176
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=8.2e-18 Score=147.35 Aligned_cols=238 Identities=16% Similarity=0.218 Sum_probs=159.6
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.++|++++|+|..+-..+++|..-|+|-+||+.+.+...
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~----------------------------------------- 224 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK----------------------------------------- 224 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-----------------------------------------
Confidence 388999999998776889999999999999997322100
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+ .+. +...|..+|.++.|+|. ...+++. .||+|++-|++.. ..-.
T Consensus 225 ------------d-~v~-------------------~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~-i~e~ 271 (498)
T KOG4328|consen 225 ------------D-GVY-------------------LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN-ISEE 271 (498)
T ss_pred ------------C-ceE-------------------EeccCCccccceEecCCChhheeeeccCceeeeeeecch-hhHH
Confidence 0 000 13688899999999995 3344444 8999999999843 2211
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+. .+......+.++.|+.+. ..++++..=|.+.+||++++... ...+..| ...|.++++
T Consensus 272 v~-----s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh------------~kKI~sv~~ 330 (498)
T KOG4328|consen 272 VL-----SLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSE---YENLRLH------------KKKITSVAL 330 (498)
T ss_pred Hh-----hcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCcc---chhhhhh------------hcccceeec
Confidence 11 222235567788898887 77777777779999999987642 2233333 368999999
Q ss_pred CCCCC-EEEEEc-CCeEEEEeccCCCCcee----eeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 350 ARNGR-HILSRD-YMTLKLWDINMDSGPVA----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 350 sp~g~-~l~sg~-d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
+|... +|++++ |++.+|||++. -.... ....|... |.++.|||++-.|++.+.|..|+
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~-l~~K~sp~lst~~Hrrs---------------V~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQ-LRGKASPFLSTLPHRRS---------------VNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred CCCCchheeecccCcceeeeehhh-hcCCCCcceecccccce---------------eeeeEEcCCCCceEeeccCCceE
Confidence 99554 566664 79999999985 22111 11223322 55999999888899999999999
Q ss_pred EEecC---CCceeeeEeccCC------CceEEEEEccCCCCCCCCcc
Q 011257 424 VFGCS---EGSAESTTLEASK------NPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 424 vw~~~---~~~~~~~~~~~~~------~~v~~~~~sp~~~~~~~~~~ 461 (490)
|||.. ..-+...++. |. -.....+|.|+......+..
T Consensus 395 v~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred EeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEecc
Confidence 99984 1111122221 21 12234578897776665544
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.8e-18 Score=153.53 Aligned_cols=264 Identities=13% Similarity=0.175 Sum_probs=188.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.+|...| .|.+|++|+.||+|+||.+.++.+.....+... ..+++|+|.+..
T Consensus 401 g~Vr~iSvdp--~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~----------------I~~vaw~P~~~~------- 455 (733)
T KOG0650|consen 401 GLVRSISVDP--SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE----------------IRSVAWNPLSDL------- 455 (733)
T ss_pred CeEEEEEecC--CcceeeecCCCCcEEEEEeecceEEEEEeecce----------------eEEEEecCCCCc-------
Confidence 9999999987 678999999999999999999998887766532 238999999885
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-----cCCcEEEEEcCCCCce
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQS 267 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d~~i~~wd~~~~~~~ 267 (490)
.+++......+.+.+-.-+.. +.--+....|+++ .++.+..|.-....+.
T Consensus 456 ----~vLAvA~~~~~~ivnp~~G~~---------------------~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~ 510 (733)
T KOG0650|consen 456 ----CVLAVAVGECVLIVNPIFGDR---------------------LEVGPTKELLASAPNESEPDAAVVTWSRASLDEL 510 (733)
T ss_pred ----eeEEEEecCceEEeCccccch---------------------hhhcchhhhhhcCCCccCCcccceeechhhhhhh
Confidence 333333333344433011100 0000111122221 2556777865522221
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
..-+ .....|...|..+.|+..| .+|++...+ ..|.|+++...... ..|.... +.|
T Consensus 511 ~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~PF~ksk------------G~v 569 (733)
T KOG0650|consen 511 EKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SPFRKSK------------GLV 569 (733)
T ss_pred ccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----CchhhcC------------Cce
Confidence 1000 0123578899999999999 899988764 46888988875432 2232222 678
Q ss_pred EEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
.++.|+|...+|+.++...|+|||+.. ...++.+.....+ |..++++|.|.-|+.|+.|+.+..
T Consensus 570 q~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred eEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeeeeecCCCCeEEEecCCCeeEE
Confidence 999999999999999999999999986 6666666555544 348999999999999999999999
Q ss_pred EecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
+|+.-+....+++..|...+++++|++.-+....++.+.
T Consensus 634 fDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 634 FDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred EEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 999987777899999999999999999999888777644
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=149.09 Aligned_cols=306 Identities=15% Similarity=0.183 Sum_probs=217.6
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-.|.+.|..|.|...|..|++|+.|..|.+||+...... +.-..||.
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~----------- 185 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC----------- 185 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc-----------
Confidence 369999999999999999999999999999999877632 23346777
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|....|.|..+..-+++++.||.+++=.+....
T Consensus 186 -~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~-------------------------------------------- 220 (559)
T KOG1334|consen 186 -NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG-------------------------------------------- 220 (559)
T ss_pred -cchhhhhccCCCCCcCceeccccCceeeeeecccc--------------------------------------------
Confidence 67888889998888889999999999865443211
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
...++.+ +..|.+.|..++.-|+. ..|.++ .|+.+.-+|+++......
T Consensus 221 ----------~~e~t~r--------------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 221 ----------YVENTKR--------------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred ----------ceeccee--------------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 1111111 25677888888888864 345665 899999999986544332
Q ss_pred eeecCCCccCCCC---CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc--ccccceeccccCCCccccccccccce
Q 011257 270 IVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 270 ~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+. .-..+. -....++..|.....|++|+.|-.+++||.+.-... ...+..|..+.. .....-.|
T Consensus 271 ~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl------~~d~~v~I 339 (559)
T KOG1334|consen 271 FV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL------VEDDPVNI 339 (559)
T ss_pred ee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc------cccCcccc
Confidence 21 111222 256789999988779999999999999998864321 011222222221 11222569
Q ss_pred EEEEECCCCCE-EEEEcCCeEEEEeccCC-C----------Ccee-eeeeeccccccccccccCCCccceeeEE-EcCCC
Q 011257 345 SDIKFARNGRH-ILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFECC-LSGDG 410 (490)
Q Consensus 345 ~~l~~sp~g~~-l~sg~d~~i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~d~ 410 (490)
++++|+.++.- |++-+|-.|+++.-... + ..+. .+++|..... |-.+. |-|..
T Consensus 340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVNFfGPrs 406 (559)
T KOG1334|consen 340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVNFFGPRS 406 (559)
T ss_pred eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceeeeccCcc
Confidence 99999976554 45557888999954431 1 1122 2566655322 33454 67889
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecCee
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRGMF 470 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~~~ 470 (490)
.|+++|++-|.|.||+-.+++. ++.+++...-|+|+.-+|--|..+.++++...+.+..
T Consensus 407 EyVvSGSDCGhIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ceEEecCccceEEEEecchhHH-HHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 9999999999999999999987 6888888889999999999999999998887766653
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=3.8e-17 Score=155.58 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=113.4
Q ss_pred EEEecCCCCEEEEe--cCCcEEEE--EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCCeEEEEeC
Q 011257 238 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDM 312 (490)
Q Consensus 238 ~i~~~~~~~~l~~~--~d~~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~ 312 (490)
.++|+|||+.|+.+ .++.+.+| |+.. +... .+..+...+..+.|+||| +.|+ ++..+|...||++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~-~~~~--------~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANG-GTPS--------QLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCC-CCeE--------eeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEE
Confidence 46899999988875 47766665 5542 2222 234456667889999999 6555 4446788888887
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (490)
...... ...+ .+. . ....|+|||++|+..+...+.+||+.+ +... .+.....
T Consensus 322 ~~~~~~---~~~l-~~~------------~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~-~lt~~~~-------- 373 (429)
T PRK01742 322 SASGGG---ASLV-GGR------------G--YSAQISADGKTLVMINGDNVVKQDLTS-GSTE-VLSSTFL-------- 373 (429)
T ss_pred ECCCCC---eEEe-cCC------------C--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeE-EecCCCC--------
Confidence 543211 1111 111 2 346899999999886544566799985 5433 2221111
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC--CCceeeeEeccCCCceEEEEEccCC
Q 011257 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS--EGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 393 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~--~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
...+.|+|||++|++++.+|.+.+|.+. +|+. .+.+..|.+.+...+|||--
T Consensus 374 --------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~-~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 374 --------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF-KARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred --------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc-eEEccCCCCCCCCcccCCCC
Confidence 1267899999999999999988888763 4555 57788888889999999853
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=2.3e-16 Score=148.99 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=168.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEE--eeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV--FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|+++.|+|. +..+++.|..+|.|.+||++.+..... ...... .+. ..+..+.|..+-.
T Consensus 243 s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~----sh~-------~~v~~vvW~~~~~------ 304 (555)
T KOG1587|consen 243 SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEV----SHS-------EPVTAVVWLQNEH------ 304 (555)
T ss_pred CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccc----cCC-------cCeEEEEEeccCC------
Confidence 67999999994 457899999999999999998754221 111100 001 1112445544322
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeec-----cccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCC
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEI 263 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~ 263 (490)
+.-+++++.||.|..|++ ..........+..... ......+++++|.+. -..|+.| ++|.|.--+...
T Consensus 305 ----~~~f~s~ssDG~i~~W~~-~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 305 ----NTEFFSLSSDGSICSWDT-DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred ----CCceEEEecCCcEeeeec-cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 124788888999999983 2221111111111110 122356788999884 5567778 899888744432
Q ss_pred CCceeeeeecCC-CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 264 SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
........ .++ ..+..|.++|.++.++|-+...|++++ |.+++||..... ..++..+..+. .
T Consensus 380 ~~~~~~~~-~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~---~~Pl~~~~~~~------------~ 442 (555)
T KOG1587|consen 380 YTPAPEVS-YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI---ASPLLSLDSSP------------D 442 (555)
T ss_pred Cccccccc-ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC---CCcchhhhhcc------------c
Confidence 22222110 111 245678999999999999966777776 999999987632 12344444443 5
Q ss_pred ceEEEEECCCCCEEE-EEc-CCeEEEEeccC-CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 343 SISDIKFARNGRHIL-SRD-YMTLKLWDINM-DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~-sg~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
.+++++|||-..-++ +++ +|.|.+||+.. ...++.+....... ...+.|++.|+.|++|...
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~---------------l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPA---------------LTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccc---------------cceeecCCCCcEEEEecCC
Confidence 699999999765554 454 59999999974 23455555444222 2378899999999999999
Q ss_pred CeEEEEecCCC
Q 011257 420 NLFRVFGCSEG 430 (490)
Q Consensus 420 g~i~vw~~~~~ 430 (490)
|.+++|++...
T Consensus 508 G~~~~~~l~~~ 518 (555)
T KOG1587|consen 508 GTTHILKLSES 518 (555)
T ss_pred CcEEEEEcCch
Confidence 99999999743
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.2e-16 Score=132.14 Aligned_cols=256 Identities=11% Similarity=0.180 Sum_probs=176.7
Q ss_pred cccccccEEEEEECCCCC-----EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccce
Q 011257 31 EVQEVDIISAIEFDKSGD-----HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~-----~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 105 (490)
.+.|.-+++.+.|.|+.. +|||.+ | .+++|.+...+.. ......+..+.
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~-------------------~~~~~~L~~~k----- 145 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESR-------------------VELQSVLNNNK----- 145 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCc-------------------eehhhhhccCc-----
Confidence 467888999999999763 566653 3 7999999853311 01112222222
Q ss_pred eeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe---EEEEeeeccCCCcCCCCCCccccccccCceEEecc
Q 011257 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (490)
Q Consensus 106 ~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 182 (490)
.-++..++++..|+. -+.+++.+++-|-+..|||++++. ++..+-.+. ..++ .++|...
T Consensus 146 --ns~~~aPlTSFDWne-~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD--------KEV~-------DIaf~~~ 207 (364)
T KOG0290|consen 146 --NSEFCAPLTSFDWNE-VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD--------KEVY-------DIAFLKG 207 (364)
T ss_pred --ccccCCccccccccc-CCcceeEeecccCeEEEEEEeeccccceeeEEEecC--------ccee-------EEEeccC
Confidence 112227899999985 456799999999999999999862 233222222 1233 6788876
Q ss_pred CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccc-ccceeEEEecCC-CCEEEEe--cCCcEEE
Q 011257 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSD-GETFISA--DDLRINL 258 (490)
Q Consensus 183 g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~-~~~l~~~--~d~~i~~ 258 (490)
+.. .+++.+.||.++++| ++..+..... +.... ..+...++|+++ -+++|+- +...|.+
T Consensus 208 s~~-----------~FASvgaDGSvRmFD-LR~leHSTII-----YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 208 SRD-----------VFASVGADGSVRMFD-LRSLEHSTII-----YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred ccc-----------eEEEecCCCcEEEEE-ecccccceEE-----ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 664 889999999999999 5544432221 11222 456778899885 5566663 6788999
Q ss_pred EEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc--cccccceeccccCCCcccc
Q 011257 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSF 336 (490)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~ 336 (490)
.|++.....+. ++.+|.+.|+.++|.|..+..|++++.|..+.+||+.+... ...++..+.
T Consensus 271 LDiR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---------- 333 (364)
T KOG0290|consen 271 LDIRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---------- 333 (364)
T ss_pred EEecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh----------
Confidence 99996655543 68999999999999999889999999999999999986421 111222222
Q ss_pred ccccccceEEEEECC-CCCEEEEEcCCeEEEE
Q 011257 337 FTEIIASISDIKFAR-NGRHILSRDYMTLKLW 367 (490)
Q Consensus 337 ~~~h~~~i~~l~~sp-~g~~l~sg~d~~i~iw 367 (490)
..+.|..+.|++ .+.+++.+..+.+.+.
T Consensus 334 ---a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 334 ---AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred ---ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 226799999996 6788888876666553
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3e-16 Score=136.64 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=138.1
Q ss_pred eEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc
Q 011257 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (490)
..++|+.+|..|+++ .||++|+|+........ ....|...|.++.|+||| .+|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999999 89999999976443332 356789999999999999 999999999 8999999998
Q ss_pred cccccccceeccccCCCccccccccccceEEEEECCCC---CE-EEE-EcC-CeEEEEeccCCCCceeeeeeeccccccc
Q 011257 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RH-ILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g---~~-l~s-g~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
... ........ ......+.|+.|+ .+ +++ ... +.|+.||+.....- ..++.....
T Consensus 218 ~~~----a~~t~~~k----------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AAL----ARKTPFSK----------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chh----hhcCCccc----------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 432 11111110 1346678888776 33 333 234 78888887642221 111111100
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
.....|.+++.|+||+++|.|+.||.|.|++..+-+.....-+.|...|+.+.|+||.+.....+.
T Consensus 279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 000014599999999999999999999999999988877777899999999999999887665443
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=2.9e-16 Score=153.36 Aligned_cols=300 Identities=12% Similarity=0.134 Sum_probs=174.4
Q ss_pred CCCccccccccccccccccccccccccccccccEEEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCCcccccccccce
Q 011257 5 GGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (490)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg-~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 83 (490)
+..+....++.+|+.... ......+|...|..++.++.. .++++|+.||+|++|+...-....
T Consensus 1022 p~~~~~~~p~~gW~p~G~----lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------ 1085 (1431)
T KOG1240|consen 1022 PSAWSVGSPPPGWNPRGI----LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------ 1085 (1431)
T ss_pred CchhhcCCCCCCCCccce----EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------------
Confidence 345566677788988763 223456799999999998854 999999999999999986533110
Q ss_pred eecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCC
Q 011257 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG 163 (490)
Q Consensus 84 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 163 (490)
..+...+.-+ .....+.++..++ +++.+|.++.||.|++.+++...................
T Consensus 1086 ------~s~rS~ltys----------~~~sr~~~vt~~~--~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1086 ------GSARSELTYS----------PEGSRVEKVTMCG--NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred ------ceeeeeEEEe----------ccCCceEEEEecc--CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence 0000111111 0126688888885 566999999999999999886321111111111111111
Q ss_pred CCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC
Q 011257 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (490)
Q Consensus 164 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (490)
.|.+..+. +|....+. -.++.+...+.+..||+....+.-... . ....+.|++++.+|
T Consensus 1148 ~g~vv~m~------a~~~~~~S----------~~lvy~T~~~~iv~~D~r~~~~~w~lk----~--~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1148 DGVVVSMH------AFTAIVQS----------HVLVYATDLSRIVSWDTRMRHDAWRLK----N--QLRHGLVTSIVIDP 1205 (1431)
T ss_pred CCceEEee------cccccccc----------eeEEEEEeccceEEecchhhhhHHhhh----c--CccccceeEEEecC
Confidence 22222211 12111111 167788888999999943322221111 1 22237899999999
Q ss_pred CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCC--cEEEEEe--CCCeEEEEeCCCcccc
Q 011257 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSALC 318 (490)
Q Consensus 244 ~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~--~dg~i~iwd~~~~~~~ 318 (490)
.++++++| ..|.+.+||++ -+..+..+ .+ ++..+++.+..+|..+ ...++++ ..+.|.+|++.++...
T Consensus 1206 ~~~WlviGts~G~l~lWDLR-F~~~i~sw-----~~-P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLR-FRVPILSW-----EH-PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred CceEEEEecCCceEEEEEee-cCceeecc-----cC-cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 99999999 89999999999 44333332 22 3447777777776542 3444444 4788999999988421
Q ss_pred ccccceeccc-cCCCcccc------ccccccceEEEEECCCCCEEEE-EcCCeEEEEeccC
Q 011257 319 DTHSKLFEEQ-EAPGTRSF------FTEIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (490)
Q Consensus 319 ~~~~~~~~~~-~~~~~~~~------~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~ 371 (490)
.++-.. ..+.-... -+.+.-.....++.--+..+.+ |+|..|+.||...
T Consensus 1279 ----~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1279 ----TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ----EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 222211 10000000 0011112222233323345555 5789999999875
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=8.9e-18 Score=157.45 Aligned_cols=283 Identities=13% Similarity=0.182 Sum_probs=203.0
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|..+|+|+.|...|.++++|+.|..|+||..++..+ ++...||.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------------lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------------LASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-----------------------hccCCCCc----------
Confidence 356999999999999999999999999999999887764 58899999
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|+.++.+ .+..++++++.|..|++|.+..+....++..+. |.+. +++|+|-
T Consensus 233 --~ditdlavs--~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrght--------gavt-------aiafsP~-------- 285 (1113)
T KOG0644|consen 233 --GDITDLAVS--SNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHT--------GAVT-------AIAFSPR-------- 285 (1113)
T ss_pred --cccchhccc--hhhhhhhhcccCceEEEEecCCCchHHHHhccc--------ccee-------eeccCcc--------
Confidence 889999987 456688999999999999999987666554432 2333 6777774
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.+.+.||++++|| ..-.......++.. ......+.++.|-..+..++++ .|+.-..|.....
T Consensus 286 --------~sss~dgt~~~wd-~r~~~~~y~prp~~---~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----- 348 (1113)
T KOG0644|consen 286 --------ASSSDDGTCRIWD-ARLEPRIYVPRPLK---FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----- 348 (1113)
T ss_pred --------ccCCCCCceEecc-ccccccccCCCCCC---cccccceeeeeccccccccccccCCcccccchhhHh-----
Confidence 3568899999999 22011111111111 1122456677788888888998 7888888876521
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
..+...+.-+.++.+-..+.+++-.+-.+.+|++.++.+. +.+.+ |...+..+.+
T Consensus 349 ---------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~----H~l~g------------hsd~~yvLd~ 403 (1113)
T KOG0644|consen 349 ---------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL----HNLMG------------HSDEVYVLDV 403 (1113)
T ss_pred ---------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhh----hhhcc------------cccceeeeee
Confidence 2223333333333343356777778889999999988653 44444 4478999999
Q ss_pred CCCCCEEEE--EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 350 ARNGRHILS--RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 350 sp~g~~l~s--g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
+|-...++- |-||...|||+-. +.+++.+...... +.+.+||+||..++....-|.++|...
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~~gh~k---------------l~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGK---------------LVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeeccc-CCcceeeecccce---------------eeccccCCCCceEecCCCCCceEEecc
Confidence 996665553 4679999999986 7777766532221 348899999999998888899999876
Q ss_pred CCCc
Q 011257 428 SEGS 431 (490)
Q Consensus 428 ~~~~ 431 (490)
..++
T Consensus 468 gqs~ 471 (1113)
T KOG0644|consen 468 GQSK 471 (1113)
T ss_pred CCCc
Confidence 6543
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=1.9e-15 Score=139.67 Aligned_cols=274 Identities=14% Similarity=0.144 Sum_probs=163.0
Q ss_pred EEEEeCcCeEEEEEccC-CeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccC-CCCCc
Q 011257 129 YLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP-GGVSS 206 (490)
Q Consensus 129 l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~-~~~g~ 206 (490)
+++...|+.|++|++.+ +++......... ..+..++++|+++ +|+++ ..++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~--------------~~~~~l~~spd~~------------~lyv~~~~~~~ 58 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP--------------GQVQPMVISPDKR------------HLYVGVRPEFR 58 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC--------------CCCccEEECCCCC------------EEEEEECCCCc
Confidence 44457799999999964 443333222211 1233789999998 55544 56788
Q ss_pred EEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCc
Q 011257 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (490)
Q Consensus 207 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (490)
|.+|++ .. +... ...... ........++++|++++++++ .++.|.+|++...+....... .+ .+...
T Consensus 59 i~~~~~-~~-~g~l--~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~-~~~~~ 127 (330)
T PRK11028 59 VLSYRI-AD-DGAL--TFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----II-EGLEG 127 (330)
T ss_pred EEEEEE-CC-CCce--EEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ec-cCCCc
Confidence 999983 21 1110 111111 112345689999999998887 589999999974332221110 11 12234
Q ss_pred eEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCccccccc-cceeccccCCCccccccccccceEEEEECCCCCEEEEEc--
Q 011257 285 ITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 360 (490)
Q Consensus 285 v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-- 360 (490)
...++++|++ +++ ++...++.|.+||+.+...+... ........ ......+.|+|+|+++++.+
T Consensus 128 ~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~ 195 (330)
T PRK11028 128 CHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNEL 195 (330)
T ss_pred ccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecC
Confidence 6778899999 555 55566799999999863322100 00011000 03457899999999998864
Q ss_pred CCeEEEEeccCCCCc---eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEEEEecCCCceeeeE
Q 011257 361 YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTT 436 (490)
Q Consensus 361 d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~~~~~~~~~ 436 (490)
++.|.+|+++..... +..+....... .. .. . ...+.++|++++|+++.. ++.|.+|++......+ .
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~------~~-~~-~-~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~ 265 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADF------SD-TR-W-AADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-S 265 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcC------CC-Cc-c-ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-E
Confidence 599999999741122 22222111000 00 00 0 125889999999988864 7899999996543211 1
Q ss_pred eccC---CCceEEEEEccCCCCCCCCcc
Q 011257 437 LEAS---KNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 437 ~~~~---~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+..+ ....+.+.++|||+....++.
T Consensus 266 ~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 266 FEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EeEEEeccccCCceEECCCCCEEEEEEc
Confidence 2222 134568999999988776653
No 186
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=5.7e-17 Score=139.52 Aligned_cols=226 Identities=13% Similarity=0.213 Sum_probs=159.9
Q ss_pred cccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.-+|+++|..++|+| +...+|+|+.|.+|.||++..+... .+-...+..+.||.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~--------- 131 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ--------- 131 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc---------
Confidence 357999999999999 6678999999999999999765532 11223467788998
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.-|+|+|.. .+.|++++.|.+|.+||+.+++..-...++ ..+ .++.|+.||.
T Consensus 132 ---rrVg~V~wHPtA-~NVLlsag~Dn~v~iWnv~tgeali~l~hp---------d~i-------~S~sfn~dGs----- 186 (472)
T KOG0303|consen 132 ---RRVGLVQWHPTA-PNVLLSAGSDNTVSIWNVGTGEALITLDHP---------DMV-------YSMSFNRDGS----- 186 (472)
T ss_pred ---eeEEEEeecccc-hhhHhhccCCceEEEEeccCCceeeecCCC---------CeE-------EEEEeccCCc-----
Confidence 889999999955 468999999999999999999765554422 122 3889999999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc-ceeEEEecCCCCEEEEe----cCCcEEEEEcCCC
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA----DDLRINLWNLEIS 264 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~----~d~~i~~wd~~~~ 264 (490)
++++.+.|..|+||| ...... ...- .+|.+ .-..+.|-.++.++.+| ++..+-+||...-
T Consensus 187 -------~l~TtckDKkvRv~d-pr~~~~------v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 187 -------LLCTTCKDKKVRVID-PRRGTV------VSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred -------eeeeecccceeEEEc-CCCCcE------eeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 899999999999999 222221 1111 34433 23455688888877776 4889999998755
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
....... ++. ..+.|.---|.|+..-+.++|-.|+.||.|.+.........+.+|..
T Consensus 252 ~eP~~~~-----elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 252 EEPIALQ-----ELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred cCcceeE-----Eec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 4443321 233 24456666678887334455566999999999876543222344443
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.1e-14 Score=138.43 Aligned_cols=316 Identities=21% Similarity=0.361 Sum_probs=215.1
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|...|.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 457899999999999999999999999999999876541 1233333220
Q ss_pred eccceeEEEEeecCCCc-EEEEEeC-cCeEEEEEccC-CeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~-~l~~~~~-dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..+..+.+. ..++. .++..+. |+.+.+|+... .........+.. .+ ..++|+|+++
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~v-------~~~~~~~~~~--- 168 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE--------SV-------TSLAFSPDGK--- 168 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcc--------cE-------EEEEECCCCC---
Confidence 246666663 34554 4555444 99999999997 444443333321 11 1688999998
Q ss_pred cccccCCCCccccCCC-CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEEcCCC
Q 011257 188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~-~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd~~~~ 264 (490)
+++.++. ++.+++|++.. ......+ .+|...+.+++|+|++. .++++ .|+.|++||.. .
T Consensus 169 ---------~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~-~ 230 (466)
T COG2319 169 ---------LLASGSSLDGTIKLWDLRT-------GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-T 230 (466)
T ss_pred ---------EEEecCCCCCceEEEEcCC-------CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC-C
Confidence 6677775 99999999322 2223333 56889999999999998 56664 79999999877 3
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
...... .+.+|.... ...|+|++ ..+++++.|+.+++||++..... +..+.. |...+
T Consensus 231 ~~~~~~------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~------------~~~~v 287 (466)
T COG2319 231 GKLLRS------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRTLSG------------HSSSV 287 (466)
T ss_pred CcEEee------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEEEec------------CCccE
Confidence 333321 245666664 34899998 89999999999999999876431 122222 33789
Q ss_pred EEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeee--eeccccccccccccCCCccceeeEEEcCCCCEEEEe-ecCC
Q 011257 345 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSN 420 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg 420 (490)
.++.|+|++..++++ .|+.+.+||... ........ .|... +..+.|.+++..++.+ ..|+
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCCC
Confidence 999999988888886 458899998886 44444444 34432 3477774343555555 6789
Q ss_pred eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
.+++|++..... ........ .+..+.+++ . ....+
T Consensus 352 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~-~-~~~~~ 386 (466)
T COG2319 352 TIRLWDLRTGKP-LKTLEGHS-NVLSVSFSP-D-GRVVS 386 (466)
T ss_pred cEEeeecCCCce-eEEecCCc-eEEEEEECC-C-CCEEE
Confidence 999999998762 23333322 288999988 6 44433
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=6.3e-17 Score=147.43 Aligned_cols=269 Identities=16% Similarity=0.194 Sum_probs=178.2
Q ss_pred CCCCCEEEE--ecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEe
Q 011257 44 DKSGDHLAT--GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (490)
Q Consensus 44 s~dg~~lat--g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 121 (490)
..+...+|+ .+..|.|.||++.....+ |+..+-..+.+ ..|+.+.|.
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrL-----------------PDgv~p~l~Ng--------------t~vtDl~Wd 636 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRL-----------------PDGVMPGLFNG--------------TLVTDLHWD 636 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCC-----------------CcccccccccC--------------ceeeecccC
Confidence 334455554 456789999999865533 33333333333 459999999
Q ss_pred ecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccC
Q 011257 122 QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201 (490)
Q Consensus 122 p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~ 201 (490)
|. |...|++++.||.|++|.+..+.......
T Consensus 637 PF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~------------------------------------------------ 667 (1012)
T KOG1445|consen 637 PF-DDERLAVATDDGQINLWRLTANGLPENEM------------------------------------------------ 667 (1012)
T ss_pred CC-ChHHeeecccCceEEEEEeccCCCCcccC------------------------------------------------
Confidence 94 56789999999999999987654222100
Q ss_pred CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccC
Q 011257 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (490)
Q Consensus 202 ~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 279 (490)
... ..+..|...|.++.|+|- ...|+++ .|.+|++||+.+..... .+.
T Consensus 668 ---------------------tPe-~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------~l~ 717 (1012)
T KOG1445|consen 668 ---------------------TPE-KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------RLV 717 (1012)
T ss_pred ---------------------Ccc-eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------eec
Confidence 000 113788899999999994 5677777 89999999998655443 478
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE-
Q 011257 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS- 358 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s- 358 (490)
+|.+.|.+++|+|+| +.+++.+.||+|++|+-++++.. ++.-.+... ..--.|.|.-||+++++
T Consensus 718 gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~p---v~Eg~gpvg-----------tRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQP---VYEGKGPVG-----------TRGARILWACDGRIVIVV 782 (1012)
T ss_pred cCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCc---cccCCCCcc-----------CcceeEEEEecCcEEEEe
Confidence 999999999999999 99999999999999999987532 222111110 12345778889999886
Q ss_pred Ec----CCeEEEEeccCC-CCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-EEEEeecCCeEEEEecCCCce
Q 011257 359 RD----YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 359 g~----d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~~~~~~~ 432 (490)
|- ...|.+||.++- ..++.+......... .--.+.+|.. ++++|-.|..|.+|.+-....
T Consensus 783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~--------------LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP--------------LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cccccchhhhhhhhhhhccCCcceeeeecccCcc--------------ccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 42 388999998752 244444332222110 1123555655 466777899999999876554
Q ss_pred eeeEeccCCCce--EEEEEcc
Q 011257 433 ESTTLEASKNPM--RRQVQTP 451 (490)
Q Consensus 433 ~~~~~~~~~~~v--~~~~~sp 451 (490)
-+..+..|..++ ..++|.+
T Consensus 849 y~lpl~~f~sp~~hqGl~fl~ 869 (1012)
T KOG1445|consen 849 YLLPLAPFMSPVGHQGLAFLQ 869 (1012)
T ss_pred eeeecccccCCCcccceeeec
Confidence 344444444333 2344444
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=5.3e-16 Score=134.17 Aligned_cols=303 Identities=13% Similarity=0.181 Sum_probs=183.5
Q ss_pred ccccccccccccccccc------ccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCccccccccccee
Q 011257 11 AAQPLEWKFSQVFGERT------AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSM 84 (490)
Q Consensus 11 ~~~~~~w~~~~~~~~~~------~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 84 (490)
......|+....-.... ......|...|+++.|+|+|.+||+|+.+|.|.+|....-+.. ...+ ..-
T Consensus 35 D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~------~~d~-e~~ 107 (434)
T KOG1009|consen 35 DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF------DADT-EAD 107 (434)
T ss_pred ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc------cccc-hhh
Confidence 34556688775422221 1123469999999999999999999999999999998742211 0111 111
Q ss_pred ecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCC
Q 011257 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (490)
Q Consensus 85 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
.+.+.+.....+.+|. +.|..++|+| ++.++++++.|..+++||+..+.......-+.+
T Consensus 108 ~~ke~w~v~k~lr~h~------------~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~------- 166 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHR------------DDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH------- 166 (434)
T ss_pred hCccceEEEEEecccc------------cchhhhhccC--CCceeeeeeccceEEEEEeccceeEeecccccc-------
Confidence 1223344556677887 7899999997 667999999999999999999988776654432
Q ss_pred CCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC
Q 011257 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (490)
Q Consensus 165 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (490)
..+.++|.|-.+ ++++-+.|...+.+.+ .-...+..+..
T Consensus 167 --------yvqgvawDpl~q------------yv~s~s~dr~~~~~~~------------------~~~~~~~~~~~--- 205 (434)
T KOG1009|consen 167 --------YVQGVAWDPLNQ------------YVASKSSDRHPEGFSA------------------KLKQVIKRHGL--- 205 (434)
T ss_pred --------ccceeecchhhh------------hhhhhccCcccceeee------------------eeeeeeeeeee---
Confidence 223677777777 6666666654444330 00011122221
Q ss_pred CCEEEEe-----cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC----CCeE-----EEE
Q 011257 245 GETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSI-----RLI 310 (490)
Q Consensus 245 ~~~l~~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i-----~iw 310 (490)
..+.+. .....++|.-++. ..-...+.|+|+| .++++... .+.+ +++
T Consensus 206 -~~m~~~~~~~~e~~s~rLfhDeTl-----------------ksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvf 266 (434)
T KOG1009|consen 206 -DIMPAKAFNEREGKSTRLFHDETL-----------------KSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVF 266 (434)
T ss_pred -eEeeecccCCCCcceeeeeecCch-----------------hhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEee
Confidence 111111 1223344433321 1224567889999 77777543 2222 222
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECC------------------CCCEEEEEcCCeEEEEeccCC
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------------------NGRHILSRDYMTLKLWDINMD 372 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp------------------~g~~l~sg~d~~i~iwd~~~~ 372 (490)
+ ++...+|...+.... .+...+.|+| -+..+|.+..+.|.+||.++
T Consensus 267 s---rk~l~rP~~~lp~~~------------k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~- 330 (434)
T KOG1009|consen 267 S---RKDLKRPAARLPSPK------------KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT- 330 (434)
T ss_pred c---cccccCceeecCCCC------------cceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc-
Confidence 2 111222222222222 3444444443 23345557778999999987
Q ss_pred CCceeeeee-eccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 373 SGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 373 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
..++..... |-.. +++++|++||.+|+..+.||...+-.++..+.
T Consensus 331 ~~P~~~v~nihy~~---------------iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSA---------------ITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ccceEEEeeeeeee---------------ecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 666665543 3222 56999999999999999999888887776544
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=129.79 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=169.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|+++.|- ...+|++|..-|.|++|++++.+.....+..... . ...+.-.|+
T Consensus 15 ~~v~s~~fq---a~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~-------~-------it~lq~~p~---------- 67 (323)
T KOG0322|consen 15 SSVTSVLFQ---ANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRL-------F-------ITNLQSIPN---------- 67 (323)
T ss_pred chheehhhc---cchhhhcccccceEEEEEeecCccchhhhhhccc-------e-------eeceeecCC----------
Confidence 889999995 3457999999999999999998766554422110 0 002222333
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-----CC----CEEEE-e-cCCcEEEEEc
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DG----ETFIS-A-DDLRINLWNL 261 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-----~~----~~l~~-~-~d~~i~~wd~ 261 (490)
+.+.+-+.|+.+.+|++..... ..-|+-.++++.|.+ .+ ..++. + ....+.+-|.
T Consensus 68 ---d~l~tqgRd~~L~lw~ia~s~~-----------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 68 ---DSLDTQGRDPLLILWTIAYSAF-----------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ---cchhhcCCCceEEEEEccCcce-----------EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 3578999999999999322111 122223333444332 21 11222 1 1111222222
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcC-CCC-cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHP-THC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
.... ...+ .+..-.+..+.+++..+.- .+. -++++|.++|.+.+||+.++... ++-.....-......
T Consensus 134 g~~t-qv~i---~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~------~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 134 GDTT-QVQI---ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI------IQLPQSSKVESPNAS 203 (323)
T ss_pred Cccc-eeEc---cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee------eccccccccccchhh
Confidence 2111 1111 1112234456677776432 222 35677888999999999987432 221111111223456
Q ss_pred cccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec
Q 011257 340 IIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 418 (490)
|..+|.++.+.+.-..=++| -+..+..|+++.....++.-..+.-..+ +|..+.+-||++.+|++++
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp------------Gv~gvrIRpD~KIlATAGW 271 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP------------GVSGVRIRPDGKILATAGW 271 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC------------CccceEEccCCcEEeeccc
Confidence 77899999998643333333 3478888988752222221111111111 1337899999999999999
Q ss_pred CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 419 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
|+.||||+.++... +.+++.|+..|++++|+||.+..+.++-
T Consensus 272 D~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 272 DHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred CCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 99999999999988 7999999999999999999665555443
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.9e-15 Score=141.20 Aligned_cols=299 Identities=16% Similarity=0.140 Sum_probs=193.1
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 40 ~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
.-.||+|+++++... +..|+||...+++++ ..+.+|. .+++.+.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~ 64 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECI-----------------------TSLEDHT------------APLTSVI 64 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhh-----------------------hhccccc------------Cccceee
Confidence 346899999887775 459999999999864 5788898 8899999
Q ss_pred EeecCCC-cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc-ccccc-CCCC
Q 011257 120 WCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE-RNFGC-ASND 196 (490)
Q Consensus 120 ~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~~~-~~~~ 196 (490)
+.|.... .++.+++.||+|++||...+.+...+....+.. .+.+.|.--... ..... ....
T Consensus 65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~----------------~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVH----------------ALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCcee----------------EEEechhHhCccceeEeecccce
Confidence 9986553 577799999999999999999888776654422 111111000000 00000 0000
Q ss_pred ccccCC--CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecC
Q 011257 197 SSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 197 ~l~~~~--~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
.+.+.. ..+.++-+.+.+... ....+...|.. -.++.+++.|++.....+..+.+|......+.....
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~------~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~--- 198 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDS------AKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSR--- 198 (792)
T ss_pred eeeecccccccceeeeEeeeccc------cchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccc---
Confidence 111111 112222211111000 00111123322 467888999988888867778999888544221111
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~ 354 (490)
..-..|.-.+++.++||++ +++|+|..||+|.+|.--..+... .....+.-|...|++++|+++|.
T Consensus 199 -~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~------------~t~t~lHWH~~~V~~L~fS~~G~ 264 (792)
T KOG1963|consen 199 -DITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDS------------ETCTLLHWHHDEVNSLSFSSDGA 264 (792)
T ss_pred -hhhhhhcccceeEEecccc-ceEEEeccCCcEEEEecccccccc------------ccceEEEecccccceeEEecCCc
Confidence 0123467779999999999 999999999999999644311111 11222445668999999999999
Q ss_pred EEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCc
Q 011257 355 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 355 ~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
+|++|+. +.+.+|.+.+ +++ +-+.--... |..+.+|||+.+.+....|+.|.+-...+.+
T Consensus 265 ~LlSGG~E~VLv~Wq~~T-~~k-qfLPRLgs~---------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 265 YLLSGGREGVLVLWQLET-GKK-QFLPRLGSP---------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred eEeecccceEEEEEeecC-CCc-ccccccCCe---------------eEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 9999865 9999999997 442 112111111 5689999999999999999999999887654
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=7.5e-16 Score=150.58 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=184.2
Q ss_pred ecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEE-EEeeeccCCCcCCC
Q 011257 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAG 163 (490)
Q Consensus 85 ~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~ 163 (490)
-|+|.+..++.+..|. ..|..++.++ +.+.+|++|+.||+|++||...-... ...+.
T Consensus 1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS--------- 1090 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS--------- 1090 (1431)
T ss_pred CCCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeee---------
Confidence 3566677777777777 8888999886 44579999999999999998753211 00000
Q ss_pred CCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEE-Eec
Q 011257 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI-SNN 242 (490)
Q Consensus 164 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~ 242 (490)
.+.|++.+........+...+.++.++.||.|++.++...........+.+..-....+.+.++ +|.
T Consensus 1091 ------------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~ 1158 (1431)
T KOG1240|consen 1091 ------------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFT 1158 (1431)
T ss_pred ------------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccc
Confidence 3455655554444555666778999999999999884321111111222222211112333333 343
Q ss_pred CC-CC-EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc
Q 011257 243 SD-GE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319 (490)
Q Consensus 243 ~~-~~-~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 319 (490)
.. +. .++.+ .-+.|..||++........ ......+.|++++.+|.+ .++++|+..|.+.+||+|-+..+
T Consensus 1159 ~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i- 1230 (1431)
T KOG1240|consen 1159 AIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI- 1230 (1431)
T ss_pred ccccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee-
Confidence 32 22 55666 7889999999855443332 334457889999999999 89999999999999999976432
Q ss_pred cccceeccccCCCccccccccccceEEEEECC---CCCEEEEE-c--CCeEEEEeccCCCCceeeeeeecccccccccc-
Q 011257 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSR-D--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL- 392 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp---~g~~l~sg-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 392 (490)
..+... +..+++.+..+| ...+.+++ + .+.|.+|++.+ +..-.++....+.. .+...
T Consensus 1231 ---~sw~~P-----------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~p-~ls~~~ 1294 (1431)
T KOG1240|consen 1231 ---LSWEHP-----------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGAP-ILSYAL 1294 (1431)
T ss_pred ---ecccCc-----------ccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCCc-chhhhc
Confidence 333322 225778887776 33456554 3 39999999997 66666665552211 11111
Q ss_pred cc-----CCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 393 YE-----NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 393 ~~-----~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.. ..... ...+++..-+.++.+|+.|..||.||....+.
T Consensus 1295 Ps~~~~kp~~~~-~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1295 PSNDARKPDSLA-GISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ccccCCCCCccc-ceeeecccCCceeeecCCccceeeccCCCccc
Confidence 11 11122 22455555667899999999999999987654
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=142.69 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=160.7
Q ss_pred cccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 29 ~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
.+..+|++.|.|++|+.||.+||+|+.|-.+.|||....+.. ...-.||.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll----------------------hsI~TgHt-------- 93 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL----------------------HSISTGHT-------- 93 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhccee----------------------eeeecccc--------
Confidence 345689999999999999999999999999999998744421 23346888
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..|.++.|.|..++..+++|+.|..|+++|+...+....- +|
T Consensus 94 ----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d-----------------------------~~----- 135 (758)
T KOG1310|consen 94 ----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMD-----------------------------HG----- 135 (758)
T ss_pred ----cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccc-----------------------------cC-----
Confidence 8899999999888889999999999999999864311100 00
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCCc
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
..-+++. ...|...|..++..|++ ..+.++ +||+|+-+|++....
T Consensus 136 --------------~~~~~~~-------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 136 --------------MEETTRC-------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred --------------ccchhhh-------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 0001111 25778889999999988 667777 899999999986433
Q ss_pred eeeeee--cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc--------------ccceeccccC
Q 011257 267 SFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT--------------HSKLFEEQEA 330 (490)
Q Consensus 267 ~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------~~~~~~~~~~ 330 (490)
+..-.+ .....+....-...++..+|..+.+|+.|+.|-..++||.+....... .++.|.....
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 321100 000111122245679999999989999999999999999653211000 0011110000
Q ss_pred CCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~ 371 (490)
...+.........++-+.|+|+|.-|+.. +...|+++|+..
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 00000011111235678899999877765 446899999975
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=8.2e-16 Score=129.16 Aligned_cols=247 Identities=12% Similarity=0.167 Sum_probs=163.9
Q ss_pred cccccEEEEEEC-------CCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccccc--CCccc
Q 011257 33 QEVDIISAIEFD-------KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS--HEPEF 103 (490)
Q Consensus 33 ~h~~~V~~~~~s-------~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--h~~~~ 103 (490)
+..+.|...+|- |+..++|+.+.+.-|++||.-+++.. ..+.+ |..++
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-----------------------aSy~~ydh~de~ 158 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-----------------------ASYRAYDHQDEY 158 (406)
T ss_pred ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc-----------------------cchhhhhhHHhh
Confidence 346678888885 57789999999999999999888732 22221 22110
Q ss_pred ceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEc-cCCeEEEEeeeccCCCcCCCCCCccccccccCceEEecc
Q 011257 104 DYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (490)
Q Consensus 104 ~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 182 (490)
.+..+++|+| +|..|++|. .+.|+++|+ +.++--......... ..-..|.+ .+++|+|.
T Consensus 159 ---------taAhsL~Fs~--DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~-k~gq~gii-------sc~a~sP~ 218 (406)
T KOG2919|consen 159 ---------TAAHSLQFSP--DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKG-KFGQKGII-------SCFAFSPM 218 (406)
T ss_pred ---------hhheeEEecC--CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcc-ccccccee-------eeeeccCC
Confidence 2356799996 677776654 679999999 444321111111000 00011111 26788886
Q ss_pred CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEE
Q 011257 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 260 (490)
Q Consensus 183 g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd 260 (490)
... .++.++-...+-||. . ....++..+ .+|.+.|+.++|.++|+.|.+| .+..|.+||
T Consensus 219 ~~~-----------~~a~gsY~q~~giy~----~---~~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 219 DSK-----------TLAVGSYGQRVGIYN----D---DGRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred CCc-----------ceeeecccceeeeEe----c---CCCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 553 678888888888876 1 112233333 7999999999999999999998 589999999
Q ss_pred cCCCCceeeeeecCCCccCCCCC---ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccc
Q 011257 261 LEISNQSFNIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (490)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (490)
++.....+- .+..|.. .=--+...|++ ++|++|+.||.|++||+..... .+..+..+
T Consensus 280 iR~~~~pv~-------~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~--------- 339 (406)
T KOG2919|consen 280 IRYSRDPVY-------ALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN---EVSVTGNY--------- 339 (406)
T ss_pred ehhccchhh-------hhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC---cccccccc---------
Confidence 996655432 3444433 22235557888 9999999999999999987321 12333333
Q ss_pred cccccceEEEEECCCCCEEEEEcCCeE
Q 011257 338 TEIIASISDIKFARNGRHILSRDYMTL 364 (490)
Q Consensus 338 ~~h~~~i~~l~~sp~g~~l~sg~d~~i 364 (490)
...++.++++|--..+++++...+
T Consensus 340 ---sd~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 340 ---SDTVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred ---cccccceecCcccceeeeccCcee
Confidence 367999999999777777765443
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=5.1e-14 Score=120.74 Aligned_cols=238 Identities=13% Similarity=0.158 Sum_probs=158.5
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
...+..+.|+.|...|..|+.|| .++|+.+.... +.....+ . ..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----------------------~~~~~~~-~------------~~ 48 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----------------------CFSKDTE-G------------VS 48 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----------------------hhcccCC-C------------eE
Confidence 34577788999999999999996 57777654331 0010110 1 33
Q ss_pred eeEEEEeecCCCcEEEEEeCc--CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 115 INKIRWCQSANSALYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~d--g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
|-.+-|+ ..+++..+.+ +.+++.++..+..++...++..- .++.+..+
T Consensus 49 IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~I----------------L~VrmNr~---------- 98 (391)
T KOG2110|consen 49 IVEMLFS----SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSI----------------LAVRMNRK---------- 98 (391)
T ss_pred EEEeecc----cceeEEEecCCCceEEEEEcccCceEEEEecCCce----------------EEEEEccc----------
Confidence 5556675 2366666554 45888888887766655444220 02222221
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe---cCCcEEEEEcCCCCceee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~d~~i~~wd~~~~~~~~~ 269 (490)
.|++.-.+ .|.||| +.......... . ...+...+.++++++.+.+++.- ..|.|.+||..+-.. ..
T Consensus 99 ----RLvV~Lee-~IyIyd-I~~MklLhTI~---t-~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~ 167 (391)
T KOG2110|consen 99 ----RLVVCLEE-SIYIYD-IKDMKLLHTIE---T-TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VN 167 (391)
T ss_pred ----eEEEEEcc-cEEEEe-cccceeehhhh---c-cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-ee
Confidence 33333333 399999 33333221111 1 12455667777777788899883 689999999984443 33
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
.+..|.+.+.+++|+|+| .+|||++..|+ ||++.+.+++.. +.|..... ...|.+++
T Consensus 168 -------~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl----~eFRRG~~----------~~~IySL~ 225 (391)
T KOG2110|consen 168 -------TINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKL----YEFRRGTY----------PVSIYSLS 225 (391)
T ss_pred -------EEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEe----eeeeCCce----------eeEEEEEE
Confidence 356899999999999999 99999999987 799999998753 45543321 15799999
Q ss_pred ECCCCCEEEEEcC-CeEEEEeccC
Q 011257 349 FARNGRHILSRDY-MTLKLWDINM 371 (490)
Q Consensus 349 ~sp~g~~l~sg~d-~~i~iwd~~~ 371 (490)
|+||+++|++.++ ++|.+|.+..
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999998766 9999999875
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=144.60 Aligned_cols=265 Identities=14% Similarity=0.174 Sum_probs=189.1
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|+.++|-| ||..|+.+.. ..+.+||...|...+..+.+.. .++ +++|+.||+
T Consensus 14 ci~d~afkP--DGsqL~lAAg-~rlliyD~ndG~llqtLKgHKD--------tVy-------cVAys~dGk--------- 66 (1081)
T KOG1538|consen 14 CINDIAFKP--DGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKD--------TVY-------CVAYAKDGK--------- 66 (1081)
T ss_pred chheeEECC--CCceEEEecC-CEEEEEeCCCcccccccccccc--------eEE-------EEEEccCCc---------
Confidence 489999997 6667776654 4789999999887666555432 333 899999999
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeec
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
.+++|+.|..|.+|. ...++ .+...|.+.|.|+.|+|-...|++++=...-+|.........
T Consensus 67 ---rFASG~aDK~VI~W~--~klEG--------~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K----- 128 (1081)
T KOG1538|consen 67 ---RFASGSADKSVIIWT--SKLEG--------ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK----- 128 (1081)
T ss_pred ---eeccCCCceeEEEec--ccccc--------eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----
Confidence 899999999999998 11111 223689999999999999999999855557789876332211
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
......+.+.+|..|| .+|+.|-.+|+|.+-+-...+. -.++.+ .+...+|.+++|+|..
T Consensus 129 -----~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek-----~~I~Rp---------gg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 129 -----HKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEK-----VKIERP---------GGSNSPIWSICWNPSS 188 (1081)
T ss_pred -----hhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcc-----eEEeCC---------CCCCCCceEEEecCCC
Confidence 1235678899999999 9999999999999875433221 112111 1122689999999953
Q ss_pred -----CEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 354 -----RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 354 -----~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
..++..+. .++.+|.+. ++.+..-+.-.- +-.++.+-++|.++..|+.|+.+++|--
T Consensus 189 g~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~F---------------dP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQTLSFYQLS--GKQIGKDRALNF---------------DPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred CCCccceEEEEeccceeEEEEec--ceeecccccCCC---------------CchhheeccCCcEEEEccCCCceEEEee
Confidence 34445544 677777775 443332111110 0137889999999999999999999985
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
+ | .++.++......|+.++..|.++...++--+
T Consensus 252 ~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 252 D-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred c-C-eEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence 5 3 3357777778899999999999987766433
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.1e-15 Score=147.34 Aligned_cols=297 Identities=14% Similarity=0.171 Sum_probs=180.1
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
-..+.|+|..+ .++++...-.|++||.+.++...-+....... ..+ ..+.+ ++..+
T Consensus 1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~-----t~V-------s~l~l----------iNe~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPD-----TRV-------SDLEL----------INEQD 1122 (1387)
T ss_pred CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCC-----Ccc-------ceeee----------ecccc
Confidence 45577887555 78888877899999999887644332221100 000 02222 12223
Q ss_pred CCccccCCCCCcEEEeeeeccc-cccc---ccceeeeeccccccceeEEEecCC-CCEEEEecCCcEEEEEcCCCCceee
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQ-ETNL---VAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQSFN 269 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~-~~~~---~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~~wd~~~~~~~~~ 269 (490)
..++++++.||.|+||+-.... .... ....+.....+..+.=.-+.|... |.++++|+-..|++||.........
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 3488999999999999822111 1100 011111111111111133557665 4445555889999999984443322
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+ ..+....|+++.-+-.+++++++|..||.|++||.+.... +..+..+..|... .+|..+.+
T Consensus 1203 i-------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~----------~~Iv~~sl 1264 (1387)
T KOG1517|consen 1203 I-------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDV----------EPIVHLSL 1264 (1387)
T ss_pred c-------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCc----------ccceeEEe
Confidence 1 1234556777766544448999999999999999987542 1223444444321 23999999
Q ss_pred CCCCCE-EEEEc-CCeEEEEeccCC-CCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 350 ARNGRH-ILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 350 sp~g~~-l~sg~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
-+.|-- |++|+ +|.|++||+++. .....++..|.... .+++++..++....+|+|+. +.|+||+
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG------------s~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG------------SALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC------------ccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 886644 78874 699999999972 22222333332110 01458999999999999998 9999999
Q ss_pred cCCCceeeeEecc-------CCCceEEEEEccCCCCCCCCccCcceecC
Q 011257 427 CSEGSAESTTLEA-------SKNPMRRQVQTPSRPSRPLGSLSGVVRRG 468 (490)
Q Consensus 427 ~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~~~~~~~~~~~~~~ 468 (490)
+...+. ..++. ....+.+++|+|-....+.++.+....-+
T Consensus 1332 ~~G~~l--~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1332 LSGEQL--NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cChhhh--cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 985432 33322 23678999999998888877655444433
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=2e-15 Score=126.78 Aligned_cols=232 Identities=13% Similarity=0.183 Sum_probs=164.2
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
..+|+|.+|++|+..+|.+-....|.||...... .+....+++.|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence 5789999999999999999999999999987665 234566778887 88
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEc-cCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
|+.|+|+|.. +.|++++.|+.-++|.. .+++.+....
T Consensus 58 vtgvdWap~s--nrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPKS--NRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCCC--CceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 9999999844 48999999999999988 5555444211
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+..+...++++.|+|.++.||+| ....|.+|-++..+.-.-.
T Consensus 96 -----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-- 138 (361)
T KOG1523|consen 96 -----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-- 138 (361)
T ss_pred -----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh--
Confidence 12334677899999999999999 7888889888744432110
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc--ccccccccceEEEEEC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR--SFFTEIIASISDIKFA 350 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~l~~s 350 (490)
| ..-..+...|+++.|+|++ -++++|+.|+..|++..--..+-.++...--+...|.-. ..+....+.+..+.|+
T Consensus 139 -K-hikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 139 -K-HIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred -h-hhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 0 0113457889999999999 899999999999999754332221111111111111000 0011234789999999
Q ss_pred CCCCEEEE-EcCCeEEEEeccCCCCceeeee
Q 011257 351 RNGRHILS-RDYMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 351 p~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~ 380 (490)
|+|..|+- +.|..+.+-|...+.+.+..+.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 99999997 5789999999875443444443
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.3e-15 Score=142.69 Aligned_cols=318 Identities=12% Similarity=0.162 Sum_probs=195.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.-.++|.++||.++++|+|..||.|.+|.--.... +-.-.+.++-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence 467888899999999999999999999999998543110 111235577787
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|+++.|++ +|.+|++|+..|.+.+|.+.+++.+-..++. +....+.+|||+.
T Consensus 252 --~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg----------------s~I~~i~vS~ds~------ 305 (792)
T KOG1963|consen 252 --DEVNSLSFSS--DGAYLLSGGREGVLVLWQLETGKKQFLPRLG----------------SPILHIVVSPDSD------ 305 (792)
T ss_pred --cccceeEEec--CCceEeecccceEEEEEeecCCCcccccccC----------------CeeEEEEEcCCCC------
Confidence 7799999995 7889999999999999999998833322222 2223778899998
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccc----eeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
+......|..|.+-. ........... +...+......-.+.++++|..+.++-. ..+.|.+||+.+..
T Consensus 306 ------~~sl~~~DNqI~li~-~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 306 ------LYSLVLEDNQIHLIK-ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred ------eEEEEecCceEEEEe-ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 566667788887754 11111111110 1011112233455678899965555554 89999999998665
Q ss_pred ceeeee--ecCCCccC-CCCCceEEEEEcCCCCcEEEEEeC--------CC--eEEEEeCCCccccccccceeccccCCC
Q 011257 266 QSFNIV--DVKPANME-DLTEVITSAEFHPTHCNMLAYSSS--------KG--SIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 266 ~~~~~~--~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
...++. +.....-. .+...++.++.+-.| .+++|... || .+++|-.............
T Consensus 379 ~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g-s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~-------- 449 (792)
T KOG1963|consen 379 TIYKLQVCDENYSDGDVNIQVGITAVARSRFG-SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK-------- 449 (792)
T ss_pred eeeeEEEEeecccCCcceeEEeeeeehhhccc-eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE--------
Confidence 543321 11111111 234567788888887 88888743 32 4678876654322111111
Q ss_pred ccccccccccceEEEEECC-CCC-EEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 333 TRSFFTEIIASISDIKFAR-NGR-HILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp-~g~-~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
+...|...+...++.+ ... ..+++ .||.++||-+.. .+.+. +....+.......|+... +.+++|+.|
T Consensus 450 ---I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~-~~n~~--k~~s~W~c~~i~sy~k~~---i~a~~fs~d 520 (792)
T KOG1963|consen 450 ---INNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD-DSNIY--KKSSNWTCKAIGSYHKTP---ITALCFSQD 520 (792)
T ss_pred ---EecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec-ccccC--cCccceEEeeeeccccCc---ccchhhcCC
Confidence 1233445566666554 222 55554 679999999853 11111 011111111111122222 448999999
Q ss_pred CCEEEEeecCCeEEEEecCC
Q 011257 410 GGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~ 429 (490)
|..|+ .+.|++|.+||..+
T Consensus 521 Gslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred CcEEE-EecCCEEEEecCCC
Confidence 97665 56678999999997
No 200
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.3e-16 Score=143.50 Aligned_cols=214 Identities=18% Similarity=0.171 Sum_probs=146.7
Q ss_pred ccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC--CCccCCCCCceEEEEEcCCCCcEEEEEeCCC
Q 011257 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (490)
Q Consensus 229 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 305 (490)
+.+|.++|.|+++.+.++.+++| -||+|+.|++..........+.. ...+.||.+.|+.+++|+.. ..|++++.||
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~Dg 418 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDG 418 (577)
T ss_pred EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCc
Confidence 38999999999999999999999 89999999776332222221110 12568999999999999998 8899999999
Q ss_pred eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC-CEEEE-EcCCeEEEEeccCCCCceeeeeeec
Q 011257 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILS-RDYMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g-~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
++++|+...... .+|...... +.-.++.|-... .+.++ ..-+.-.+++... ...+..+....
T Consensus 419 Tvr~w~~~~~~~-----~~f~~~~e~----------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~ 482 (577)
T KOG0642|consen 419 TVRLWEPTEESP-----CTFGEPKEH----------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSA 482 (577)
T ss_pred eEEeeccCCcCc-----cccCCcccc----------CCcceEeeccchhHhhhhhcccccccchhhhh-hhheeeccccC
Confidence 999999887653 233332211 233455554322 11112 2224444455443 33333332221
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
.. .. .....+..+.++|.+.+.+++..|+.|+++|..+++. +....+|...++++++-|.|+.+..++.++
T Consensus 483 ~~--~~------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~-l~s~~a~~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 483 SP--GP------RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI-LHSMVAHKDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred CC--cc------cccCccceEEecCCCCeeEecccCCceeccccccccc-chheeeccceecceeecCCCceEEeecCCc
Confidence 11 00 0011134788999999999999999999999999988 678889999999999999999988887665
Q ss_pred ceecC
Q 011257 464 VVRRG 468 (490)
Q Consensus 464 ~~~~~ 468 (490)
..+..
T Consensus 554 sv~l~ 558 (577)
T KOG0642|consen 554 SVRLW 558 (577)
T ss_pred eeehh
Confidence 54433
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=2.2e-15 Score=126.88 Aligned_cols=316 Identities=12% Similarity=0.115 Sum_probs=188.7
Q ss_pred cccEEEEEECCCCCEEEEe-cCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 35 VDIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
-+.|.-+.|..|..+++.+ ..++.|.+|++...+ ....+.... +
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-----------------------w~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-----------------------WYCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce-----------------------eEEEeccCC------------C
Confidence 4667788888887765554 578899999987544 223343333 6
Q ss_pred ceeEEEEeecCCC-cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+.+++|+| +| ..|.+...|-.|.+|.+.+.+...+...+.. ...++|.|||+...+....
T Consensus 93 gls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~----------------~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN----------------VKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeECC--CcceEeeeecceeEEEEEEeccceeEEecccccC----------------ceeEEECCCCceeeeeecc
Confidence 799999998 45 4566788899999999998775544322211 1267999999943222222
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
...|++-..+ -+-|. ..+.+ .-.+-..+.+.|+|||..|+. ||---.-+.+.
T Consensus 155 DCkdyv~i~~----c~~W~------------ll~~f-~~dT~DltgieWsPdg~~laV--------wd~~Leykv~a--- 206 (447)
T KOG4497|consen 155 DCKDYVQISS----CKAWI------------LLKEF-KLDTIDLTGIEWSPDGNWLAV--------WDNVLEYKVYA--- 206 (447)
T ss_pred cHHHHHHHHh----hHHHH------------HHHhc-CCCcccccCceECCCCcEEEE--------ecchhhheeee---
Confidence 1112111000 00111 11111 223345677899999988875 44321111100
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccc------------------------------
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS------------------------------ 322 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------------ 322 (490)
..-.-.+..++|+|.+ ++++.|+.|+.+|+.+--+-+...+.+
T Consensus 207 ------Ye~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 207 ------YERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred ------eeeccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 0112347789999988 999999999999876533221110000
Q ss_pred --ceeccccCCCc------------ccc------ccccccceEEEEECCCCCEEEEEcC---CeEEEEeccCCCCceeee
Q 011257 323 --KLFEEQEAPGT------------RSF------FTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATF 379 (490)
Q Consensus 323 --~~~~~~~~~~~------------~~~------~~~h~~~i~~l~~sp~g~~l~sg~d---~~i~iwd~~~~~~~~~~~ 379 (490)
..+..+..+.. ..+ +......+.-++|++|..|+++-.| +.+-+||++. .+....+
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~avL 358 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLHAVL 358 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhhhhh
Confidence 00000000000 000 0111235778999999999999755 8999999985 4443333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
..... |....|+|....|+.+.....+++|.......+ .. ....-.|..+.|.-+|....
T Consensus 359 iQk~p----------------iraf~WdP~~prL~vctg~srLY~W~psg~~~V-~v-P~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 359 IQKHP----------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GV-PKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred hhccc----------------eeEEEeCCCCceEEEEcCCceEEEEcCCCceEE-ec-CCCCceeeeEEecCCCcEEE
Confidence 32222 458999999888888877788999998865442 22 22236799999998887644
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.6e-14 Score=123.38 Aligned_cols=298 Identities=12% Similarity=0.131 Sum_probs=181.4
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
.-.+.-++|++.-..+|++..|-.|++|+-.... ...++... +..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~------------------------pt~Lks~s-----------Qrn 142 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC------------------------PTKLKSVS-----------QRN 142 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC------------------------Cceecchh-----------hcc
Confidence 4567889999977788999999999999976522 22233322 156
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
|++++|-|.. +..|+.|+.. -|.+|..........
T Consensus 143 vtclawRPls-aselavgCr~-gIciW~~s~tln~~r------------------------------------------- 177 (445)
T KOG2139|consen 143 VTCLAWRPLS-ASELAVGCRA-GICIWSDSRTLNANR------------------------------------------- 177 (445)
T ss_pred eeEEEeccCC-cceeeeeecc-eeEEEEcCccccccc-------------------------------------------
Confidence 9999999955 4567777765 588997654221110
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeee
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~ 272 (490)
...+...+...+.. -.+| ..|++++|++||..++++ .|..|.+||..++... .+.
T Consensus 178 ---~~~~~s~~~~qvl~-----------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-pL~- 234 (445)
T KOG2139|consen 178 ---NIRMMSTHHLQVLQ-----------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-PLI- 234 (445)
T ss_pred ---ccccccccchhhee-----------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-ccc-
Confidence 00011111111111 1455 789999999999999997 6999999999855432 221
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
....+.+.-+.|+||+ .+|.+++-|+..++|+....-.. .+-..+ .+.|...+|+|+
T Consensus 235 ------~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~---erw~lg-------------sgrvqtacWspc 291 (445)
T KOG2139|consen 235 ------PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTK---ERWILG-------------SGRVQTACWSPC 291 (445)
T ss_pred ------ccCCCceeeEEEcCCC-CEEEEecccceeeeehhccccee---cceecc-------------CCceeeeeecCC
Confidence 1235668899999999 89999999999999975543211 011111 157999999999
Q ss_pred CCEEEEEcCCeEEEEeccCCCCceeeee-eeccccccccccccC-----C--CccceeeEEEcCCCCEEEEeecCC----
Q 011257 353 GRHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYEN-----D--SIFDKFECCLSGDGGRVATGSYSN---- 420 (490)
Q Consensus 353 g~~l~sg~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~--~~~~v~~~~~s~d~~~l~s~~~dg---- 420 (490)
|++|+....+.-++|.+...++...... +.....-.+.++.+. . +-.+.-+++|.|.|.+||+.-..+
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~ 371 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVL 371 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhh
Confidence 9999887666777888765333322110 000000001111100 0 011234899999999999866543
Q ss_pred ----eEEEEecCCCceeeeEec--cCCCceEEEEEccCCCCCCC
Q 011257 421 ----LFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 421 ----~i~vw~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~~~ 458 (490)
.|.+||.+..-.....+- .....-..+.|+|..+...+
T Consensus 372 ~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~l 415 (445)
T KOG2139|consen 372 LCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRL 415 (445)
T ss_pred hhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcE
Confidence 466777764322111100 11123556778876654443
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1.3e-13 Score=132.91 Aligned_cols=287 Identities=21% Similarity=0.370 Sum_probs=201.6
Q ss_pred ccccccccEEEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
....|...|.+++|+|++.++++++. |+.+++|+..... ....+.+|.
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~-------- 198 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----------------------PLSTLAGHT-------- 198 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------eEEeeccCC--------
Confidence 35678999999999999999999886 9999999998643 234566677
Q ss_pred eeeccceeEEEEeecCCCc-EEEEEeCcCeEEEEEccCCeEEEE-eeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~-~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..|.+++|+| ++. .+++++.|+.|++||...+..... ...+.. .. ...|+|++.
T Consensus 199 ----~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~-- 254 (466)
T COG2319 199 ----DPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD---------------SV-VSSFSPDGS-- 254 (466)
T ss_pred ----CceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc---------------ce-eEeECCCCC--
Confidence 7899999995 444 455559999999998886655442 222211 00 016788875
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
++++++.++.+++|++..... ....+ .+|...+.++.|.|++..++++ .|+.+.+|+.....
T Consensus 255 ----------~~~~~~~d~~~~~~~~~~~~~------~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 255 ----------LLASGSSDGTIRLWDLRSSSS------LLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred ----------EEEEecCCCcEEEeeecCCCc------EEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 677999999999999322211 22222 5778899999999988888887 67889999887544
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
..... ....|...+..+.+.+++ ..++.+ ..|+.+.+|++.... . ....... ..+
T Consensus 318 ~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~-~---~~~~~~~-------------~~~ 373 (466)
T COG2319 318 LLSSL------TLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGK-P---LKTLEGH-------------SNV 373 (466)
T ss_pred eEEEe------eecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCc-e---eEEecCC-------------ceE
Confidence 33321 123566678999994342 344444 688999999998764 1 1222211 227
Q ss_pred EEEEECCCCCEEEE-E-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 345 SDIKFARNGRHILS-R-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 345 ~~l~~sp~g~~l~s-g-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
..+.+++ ...++. + .++.+.+|+... .........+... +..+.+++++..+++++.++.+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 436 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLST-GSLLRNLDGHTSR---------------VTSLDFSPDGKSLASGSSDNTI 436 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEeccc-CeeeeeccCCCCc---------------EEEEEECCCCcEEEEecCCCcE
Confidence 8899988 544444 3 459999999986 5444444433111 4488999999999999999999
Q ss_pred EEEecCC
Q 011257 423 RVFGCSE 429 (490)
Q Consensus 423 ~vw~~~~ 429 (490)
++|+..+
T Consensus 437 ~~~~~~~ 443 (466)
T COG2319 437 RLWDLKT 443 (466)
T ss_pred EEEeccC
Confidence 9999997
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.8e-14 Score=135.56 Aligned_cols=168 Identities=15% Similarity=0.184 Sum_probs=109.9
Q ss_pred EEEecCCCCEEEEe--cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CCe--EEEE
Q 011257 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGS--IRLI 310 (490)
Q Consensus 238 ~i~~~~~~~~l~~~--~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~--i~iw 310 (490)
.++|+|||+.|+.. .++ .|++||+.+. ...+ +..+...+....|+|+| +.|+..+. ++. |.++
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg-~~~~--------lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQ--------VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCC-CEEE--------ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEE
Confidence 46799999888764 344 5888898743 3322 23334567789999999 77766655 444 4445
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cC---CeEEEEeccCCCCceeeeeeecccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY---MTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d---~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
|+.+++. ..+.... .......|+|||++|+.. .+ ..|.+||+.+ +. ...+.....
T Consensus 317 d~~~g~~-----~~lt~~~------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~~-- 375 (429)
T PRK03629 317 NINGGAP-----QRITWEG------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTFL-- 375 (429)
T ss_pred ECCCCCe-----EEeecCC------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCCC--
Confidence 6665532 2222111 235578899999999874 22 5688899875 43 333332111
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecCCe---EEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~---i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
.....|+|||++|+.++.++. +.++++..+ . ...+..|...+...+|+|-
T Consensus 376 --------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~-~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 --------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-F-KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --------------CCCceECCCCCEEEEEEcCCCceEEEEEECCCC-C-eEECccCCCCcCCcccCCC
Confidence 116789999999999887764 777887543 3 3667778888999999983
No 205
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.4e-15 Score=128.03 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=184.5
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 40 ~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
-++|||+|+|+|+.+.- .+.|-|..+-+.. ..+.. - +.|..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~c-l------------dki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFLC-L------------DKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHHH-H------------HHhhhee
Confidence 46799999999999755 8888887765421 11111 1 5588889
Q ss_pred EeecCCCcEEE-EEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCcc
Q 011257 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (490)
Q Consensus 120 ~~p~~~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l 198 (490)
|.. +..+++ ....|+.|.+|++...+......... +....+.|||||+. .|
T Consensus 56 W~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~---------------agls~~~WSPdgrh-----------iL 107 (447)
T KOG4497|consen 56 WKA--DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ---------------AGLSSISWSPDGRH-----------IL 107 (447)
T ss_pred eec--cceeeeeeeeccceEEEEEeecceeEEEeccCC---------------CcceeeeECCCcce-----------Ee
Confidence 984 434444 46888999999999877655433221 11227899999984 56
Q ss_pred ccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c-CCcEEEEEcCCCCceeeeeecCCC
Q 011257 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPA 276 (490)
Q Consensus 199 ~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~~~~~~~~~~ 276 (490)
.+...+-.|.+|.+. ...... ..-....+..++|+|||++.+.+ . |.. ..+++. ..+...++ .
T Consensus 108 ~tseF~lriTVWSL~-t~~~~~--------~~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~-~c~~W~ll----~ 172 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLN-TQKGYL--------LPHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQIS-SCKAWILL----K 172 (447)
T ss_pred eeecceeEEEEEEec-cceeEE--------ecccccCceeEEECCCCceeeeeecccHH-HHHHHH-hhHHHHHH----H
Confidence 778889999999832 222111 12223456889999999998886 2 321 111111 00000000 0
Q ss_pred ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEE
Q 011257 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (490)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 356 (490)
.+.-.+-..+.+.|+||| ..++. ||---.-. +..++.. -.+..++|+|.+++|
T Consensus 173 ~f~~dT~DltgieWsPdg-~~laV---------wd~~Leyk----v~aYe~~-------------lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 173 EFKLDTIDLTGIEWSPDG-NWLAV---------WDNVLEYK----VYAYERG-------------LGLKFVEWSPCNQFL 225 (447)
T ss_pred hcCCCcccccCceECCCC-cEEEE---------ecchhhhe----eeeeeec-------------cceeEEEeccccceE
Confidence 122234556889999999 77764 54221100 1111111 357889999999999
Q ss_pred EEEc-CCeEEEEeccCCCCcee------------------------------------eeeeecccc-------------
Q 011257 357 LSRD-YMTLKLWDINMDSGPVA------------------------------------TFQVHEHLR------------- 386 (490)
Q Consensus 357 ~sg~-d~~i~iwd~~~~~~~~~------------------------------------~~~~~~~~~------------- 386 (490)
+.|+ |+.+|+.+--+ -++.. .+..|....
T Consensus 226 avGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred Eeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 9995 68888744322 00000 000000000
Q ss_pred ----ccccccccCCCccceeeEEEcCCCCEEEEeec--CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 387 ----PKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 387 ----~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
.+..+..+. ..++-.++|++|..+++|-.+ -+.+.+||++.-+. ........+|+...|.|..+-....
T Consensus 305 ~~~lkp~tD~pnP--k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l--~avLiQk~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 305 VHKLKPPTDFPNP--KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL--HAVLIQKHPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred eecccCCCCCCCc--ccccceeeecCCceEEeeecCCCCceEEEEechhhhh--hhhhhhccceeEEEeCCCCceEEEE
Confidence 000111111 223557999999999998765 36899999996644 4445567899999999977765544
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=5.2e-15 Score=132.55 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=142.3
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
.|.++..+.||.+.+.+ .. ++..+. ..+|.+.+.+-.|+|||.-|+++ +||.|++|... +....
T Consensus 75 ~d~~~i~s~DGkf~il~----k~----~rVE~s-v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRS---- 139 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN----KS----ARVERS-ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRS---- 139 (737)
T ss_pred cceEEEEcCCceEEEec----cc----chhhhh-hhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHH----
Confidence 45788889999988865 11 111122 37899999999999999999997 99999999865 22221
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
++.....+|.|++|.|+..+.+.+.+ +.+.|=-+..... +-.+.. |.+-|.++.|+|..
T Consensus 140 ---tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k----~i~WkA------------HDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 140 ---TVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK----IIRWRA------------HDGLVLSLSWSTQS 198 (737)
T ss_pred ---HHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc----eeEEec------------cCcEEEEeecCccc
Confidence 23445788999999999855555543 3444433333211 123334 45889999999999
Q ss_pred CEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 354 RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 354 ~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
..+++| .|-..++||.. +.++.+-..|... |++++|.|| +.++.++. +++|+
T Consensus 199 ~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~---------------ITSva~npd-~~~~v~S~-nt~R~-------- 251 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQ--GANLFTSAAEEYA---------------ITSVAFNPE-KDYLLWSY-NTARF-------- 251 (737)
T ss_pred cceeecCCceeEEeeccc--CcccccCChhccc---------------eeeeeeccc-cceeeeee-eeeee--------
Confidence 999997 57999999997 7888887777765 679999999 65665654 34441
Q ss_pred eeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 433 ESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 433 ~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
-+...+.|..++|||||...+.+..
T Consensus 252 ----~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 252 ----SSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ----cCCCccceEEEEEcCCCceeecccc
Confidence 2223468999999999987765543
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=134.90 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=132.9
Q ss_pred cCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc
Q 011257 242 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (490)
Q Consensus 242 ~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (490)
.|.+--++.| .-|.+.+.|... ....+++.. ...-....|+++.|-|.++..|+.+..+|.+++||.........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 4557778888 889999998774 222221111 01112478999999998878999999999999998743210000
Q ss_pred c----c--------ceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccc
Q 011257 321 H----S--------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRP 387 (490)
Q Consensus 321 ~----~--------~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (490)
+ + .+...+....+...+.--.+.|...+|+|||++||+- .||.+||||..+ .+++..++..-+.
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFGG-- 334 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFGG-- 334 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhccc--
Confidence 0 0 0001111111222222233578999999999999985 579999999986 5555544433322
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
.++++|||||+||++|++|..|.||.+..++. +..-++|++.|..++|.|
T Consensus 335 -------------LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV-VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 -------------LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV-VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -------------eEEEEEcCCccEEEecCCcceEEEEEeccceE-EEeccccccceeeEeecc
Confidence 45999999999999999999999999998876 688899999999999995
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-14 Score=115.70 Aligned_cols=234 Identities=12% Similarity=0.147 Sum_probs=152.6
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeeccccc---ccccceeeeeccccccceeEEEecCCCCEEEEec
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET---NLVAGCRRIYAHAHDYHINSISNNSDGETFISAD 252 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 252 (490)
.-+++|.++ ++++|..+|+|.+..+ ..... ...++.......+|..++..++|. ..+|++|.
T Consensus 15 ~qa~sp~~~------------~l~agn~~G~iav~sl-~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 15 AQAISPSKQ------------YLFAGNLFGDIAVLSL-KSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHhhCCcce------------EEEEecCCCeEEEEEe-hhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 446777777 8999999999999874 22211 111222222237999999999998 45788888
Q ss_pred CCcEEEEEcCCCCc---eeeeeecCCC-cc-CCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 253 DLRINLWNLEISNQ---SFNIVDVKPA-NM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 253 d~~i~~wd~~~~~~---~~~~~~~~~~-~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
||.|+-|..+...+ +.+++..++. .. .-.--.|+++-..|.. +-+++++.|+.++-||+++|+.. +++.+
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~----r~~rG 154 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ----REYRG 154 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEE----EEEcC
Confidence 89999998764332 1222222211 11 0112357889899988 67777779999999999999753 56655
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
|. +.|.++.--.....+++| .||++|+||.++ ++.+..+......... ...+. -+-.+.
T Consensus 155 Ht------------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~l--Rp~~g-----~wigal 214 (325)
T KOG0649|consen 155 HT------------DYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLL--RPDWG-----KWIGAL 214 (325)
T ss_pred Cc------------ceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhhc--CcccC-----ceeEEE
Confidence 54 889999874444455665 679999999998 8888877654332100 00000 112344
Q ss_pred cCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
.-+..+|++|+. ..+.+|++++.++ ..++.. ..++..+.|-.|
T Consensus 215 a~~edWlvCGgG-p~lslwhLrsse~-t~vfpi-pa~v~~v~F~~d 257 (325)
T KOG0649|consen 215 AVNEDWLVCGGG-PKLSLWHLRSSES-TCVFPI-PARVHLVDFVDD 257 (325)
T ss_pred eccCceEEecCC-CceeEEeccCCCc-eEEEec-ccceeEeeeecc
Confidence 456678887765 5799999999887 344433 345666766654
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=1.6e-14 Score=121.42 Aligned_cols=245 Identities=10% Similarity=0.045 Sum_probs=166.9
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (490)
.+.+|++|+. .++.+.....+.||. .......+...++ ..|...|+.++|+|..+.+++| .|
T Consensus 14 tchAwn~drt------------~iAv~~~~~evhiy~----~~~~~~w~~~htl-s~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 14 TCHAWNSDRT------------QIAVSPNNHEVHIYS----MLGADLWEPAHTL-SEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred eeeeecCCCc------------eEEeccCCceEEEEE----ecCCCCceeceeh-hhhCcceeEEeecCCCCceeEccCC
Confidence 3789999998 788999999999998 2222223344444 7899999999999999999999 89
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
..-++|....++.-...+ .+..+...++++.|+|.+ +.||+|+.-..|.+|-++....-.- .+.+
T Consensus 77 rnayVw~~~~~~~Wkptl-----vLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWV-sKhi-------- 141 (361)
T KOG1523|consen 77 RNAYVWTQPSGGTWKPTL-----VLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWV-SKHI-------- 141 (361)
T ss_pred CCccccccCCCCeeccce-----eEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceeh-hhhh--------
Confidence 999999985344322221 345578889999999999 9999999999999998775431100 0011
Q ss_pred cccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccc-----cccccccCCCccceeeEEEc
Q 011257 334 RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP-----KLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 334 ~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s 407 (490)
-+.+...|.++.|+|++-+|++|+ |+..+++...- +.+..-......-. .+...+. ..-.-|..+.|+
T Consensus 142 ---kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI--K~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs 215 (361)
T KOG1523|consen 142 ---KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI--KGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFS 215 (361)
T ss_pred ---CCccccceeeeeccCCcceecccccCcceeEEEEee--eccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeC
Confidence 122336799999999999999985 79999987542 11111111100000 0000000 001125699999
Q ss_pred CCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
|+|..|+-.+.|..+.+-|........+.+....-|.+++.|-.+...+.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVA 265 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceee
Confidence 99999999999999999998877543455555556777777765544333
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.2e-14 Score=130.73 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=159.5
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
.+++.||+ +.|+++.|+ .+|.+|++|+.|-.+.|||.-..+....
T Consensus 43 E~eL~GH~------------GCVN~LeWn--~dG~lL~SGSDD~r~ivWd~~~~Kllhs--------------------- 87 (758)
T KOG1310|consen 43 EAELTGHT------------GCVNCLEWN--ADGELLASGSDDTRLIVWDPFEYKLLHS--------------------- 87 (758)
T ss_pred hhhhcccc------------ceecceeec--CCCCEEeecCCcceEEeecchhcceeee---------------------
Confidence 46688998 899999998 5889999999999999999875443221
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEE
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFIS 250 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~ 250 (490)
+..+|...|.++.|-|. .+++++
T Consensus 88 -------------------------------------------------------I~TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 88 -------------------------------------------------------ISTGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred -------------------------------------------------------eecccccceeEEeeeccCCCeEEEe
Confidence 12688899999999884 667888
Q ss_pred e-cCCcEEEEEcCCCCceeee--eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 251 A-DDLRINLWNLEISNQSFNI--VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 251 ~-~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
| .|..|+++|+.....--.- ......-+..|...|..++-.|+++..|.+++.||+|+-||++....|... ...
T Consensus 113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~---~~~ 189 (758)
T KOG1310|consen 113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD---EDC 189 (758)
T ss_pred ccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc---ccc
Confidence 8 8999999999842211000 000011346788999999999999999999999999999999986544210 000
Q ss_pred ccCCCccccccccccceEEEEECCCC-CEEEEE-cCCeEEEEeccCCCCceeeeeeeccc-------cc-----cccccc
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHL-------RP-----KLCDLY 393 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g-~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~-------~~-----~~~~~~ 393 (490)
+. ....+...--...++..+|.. .+|+.| +|-..++||.+...+....-..+... +. .++...
T Consensus 190 ~~---~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 190 PS---ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred cH---HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 00 000000111346788999954 566666 67899999965311111110000000 00 000000
Q ss_pred --cCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEe
Q 011257 394 --ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (490)
Q Consensus 394 --~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 437 (490)
....+.-++-+.|+|+|.-|+..-..-.|+++|+..++.....+
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00111124578999999876655555689999999887644443
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1e-13 Score=125.36 Aligned_cols=292 Identities=17% Similarity=0.234 Sum_probs=186.3
Q ss_pred ccccccccccEEEEEECCCCCE-EEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccccee
Q 011257 28 AGEEVQEVDIISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (490)
Q Consensus 28 ~~~~~~h~~~V~~~~~s~dg~~-latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (490)
.+++++|...-+.|..+|||+| +|+|..--.|++||+..... .|.-|...
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------------------KFERhlDa---- 94 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------------------KFERHLDA---- 94 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-------------------------eeeecccc----
Confidence 3456778999999999999997 56777888999999975431 13333310
Q ss_pred eeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 107 ~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
+.|.-.-.+ .|-...+.-..|++|-+....+..... .++ .....++++.-
T Consensus 95 ------e~V~feiLs--DD~SK~v~L~~DR~IefHak~G~hy~~--RIP----------------~~GRDm~y~~~---- 144 (703)
T KOG2321|consen 95 ------EVVDFEILS--DDYSKSVFLQNDRTIEFHAKYGRHYRT--RIP----------------KFGRDMKYHKP---- 144 (703)
T ss_pred ------cceeEEEec--cchhhheEeecCceeeehhhcCeeeee--ecC----------------cCCccccccCC----
Confidence 222222222 233345555667777765443322111 111 00012333221
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
+-|+++.|+. ..|.-+++ +. ++.+..+ ......++++..++...+|++| .+|.|..||.+...
T Consensus 145 -------scDly~~gsg-~evYRlNL----Eq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 145 -------SCDLYLVGSG-SEVYRLNL----EQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred -------CccEEEeecC-cceEEEEc----cc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 1224444443 34443341 11 1122222 3334788999999999999999 89999999998554
Q ss_pred ceeeeeecCCCccCCCC-----CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccc
Q 011257 266 QSFNIVDVKPANMEDLT-----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (490)
.+- .++... ....|. ..|+++.|+.+| -.+++|+.+|.+.|||+++.+.. ....|..
T Consensus 209 rv~-~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~---------- 270 (703)
T KOG2321|consen 209 RVG-TLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPL-----LVKDHGY---------- 270 (703)
T ss_pred hhe-eeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCce-----eecccCC----------
Confidence 432 222211 123333 349999999998 89999999999999999987643 2223321
Q ss_pred ccceEEEEECCC--CCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec
Q 011257 341 IASISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (490)
Q Consensus 341 ~~~i~~l~~sp~--g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 418 (490)
.-+|..+.|.+. +..+++.+...++|||-.+ +++...+...... .++|+-|++.++++|-+
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANE 333 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecC
Confidence 257888999774 5567777669999999997 8888777655442 38999999999999999
Q ss_pred CCeEEEEecCC
Q 011257 419 SNLFRVFGCSE 429 (490)
Q Consensus 419 dg~i~vw~~~~ 429 (490)
++.+..|=+..
T Consensus 334 ~~~m~~yyiP~ 344 (703)
T KOG2321|consen 334 SSKMHTYYIPS 344 (703)
T ss_pred CCcceeEEccc
Confidence 98888776654
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=1.5e-15 Score=142.84 Aligned_cols=265 Identities=11% Similarity=0.120 Sum_probs=183.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+|.|+.|. ..|.++++|+.|..++||.+++..+......+.. .+. .++.+.+..
T Consensus 191 naVyca~fD--rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--------dit-------dlavs~~n~-------- 245 (1113)
T KOG0644|consen 191 NAVYCAIFD--RTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--------DIT-------DLAVSSNNT-------- 245 (1113)
T ss_pred hheeeeeec--cccceEeecCccceeeeeeccchhhhccCCCCcc--------ccc-------hhccchhhh--------
Confidence 889999996 5788999999999999999888765544333321 111 233333333
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
++++++.|..|++|.+ .. ...+.. +.+|++.|++++|+|-. .++.||++++||.+ -.... ..
T Consensus 246 ----~iaaaS~D~vIrvWrl-~~------~~pvsv-LrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~--y~ 307 (1113)
T KOG0644|consen 246 ----MIAAASNDKVIRVWRL-PD------GAPVSV-LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRI--YV 307 (1113)
T ss_pred ----hhhhcccCceEEEEec-CC------CchHHH-HhccccceeeeccCccc---cCCCCCceEecccc-ccccc--cC
Confidence 7889999999999982 21 222222 38999999999999965 34489999999998 11111 11
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
..|..+. ....+.++.|..++ .-++|++.|+.-..|.+..-. .+. ..+.-+.++.|
T Consensus 308 prp~~~~-~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~----------~~~------------~~lif~t~ssd 363 (1113)
T KOG0644|consen 308 PRPLKFT-EKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA----------WRS------------NLLIFVTRSSD 363 (1113)
T ss_pred CCCCCcc-cccceeeeeccccc-cccccccCCcccccchhhHhh----------hhc------------cceEEEecccc
Confidence 1111222 23567788888888 899999999998888765321 110 11122222222
Q ss_pred C-CEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC-CEEEEeecCCeEEEEecCC
Q 011257 353 G-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 353 g-~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~ 429 (490)
- .+.+++ .+-.+++|++.. +..++.+.+|.... ..+.++|-. +...+++.||...|||+-.
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ccccceeeeeeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 2 344454 668999999997 88899998888763 478899954 4556899999999999999
Q ss_pred CceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
|........+| ..+...+||+||...+.+..
T Consensus 428 g~pik~y~~gh-~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 428 GIPIKHYFIGH-GKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred CCcceeeeccc-ceeeccccCCCCceEecCCC
Confidence 88754555564 56777799999998777644
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.2e-14 Score=135.62 Aligned_cols=217 Identities=11% Similarity=0.082 Sum_probs=139.1
Q ss_pred ccccccEEEEEECCCCCEEEEecCC---CcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
..|...|.+.+|||||++||.++.+ ..|.+||+.+++.. .+..+.+|
T Consensus 200 t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---------------------~l~~~~g~--------- 249 (429)
T PRK01742 200 NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---------------------VVASFRGH--------- 249 (429)
T ss_pred ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---------------------EEecCCCc---------
Confidence 4567789999999999999987643 36999999776421 12223333
Q ss_pred eeeccceeEEEEeecCCCcEEEEE-eCcCeEEEE--EccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLS-TNDKTIKLW--KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~-~~dg~i~lw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
...++|+| +|+.|+.+ ..+|.+.|| |+.++....+
T Consensus 250 ------~~~~~wSP--DG~~La~~~~~~g~~~Iy~~d~~~~~~~~l---------------------------------- 287 (429)
T PRK01742 250 ------NGAPAFSP--DGSRLAFASSKDGVLNIYVMGANGGTPSQL---------------------------------- 287 (429)
T ss_pred ------cCceeECC--CCCEEEEEEecCCcEEEEEEECCCCCeEee----------------------------------
Confidence 33578997 66677765 467776665 4444432211
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~ 263 (490)
..+...+...+|+|||+.|+.. .++...+|++..
T Consensus 288 --------------------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 --------------------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred --------------------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 1122345568899999987765 578888888764
Q ss_pred CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccc
Q 011257 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
.......+ .+.. ....|+|+| +.|++.+.++ +.+||+.+++.. .+... ..
T Consensus 324 ~~~~~~~l--------~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~~-----~lt~~-------------~~ 373 (429)
T PRK01742 324 SGGGASLV--------GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGSTE-----VLSST-------------FL 373 (429)
T ss_pred CCCCeEEe--------cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCeE-----EecCC-------------CC
Confidence 33322221 1222 357899999 8888777765 556999887531 11111 11
Q ss_pred eEEEEECCCCCEEEEEc-CCeEEEEecc-CCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 344 ISDIKFARNGRHILSRD-YMTLKLWDIN-MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~-d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
...+.|+|||++|+.++ ++.+.+|++. ..+...+.+..|.+. +..++|+|-
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~---------------~~~p~wsp~ 426 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ---------------VKFPAWSPY 426 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC---------------CCCcccCCC
Confidence 24578999999999864 5766766652 237778888776654 237788873
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=5.4e-15 Score=130.19 Aligned_cols=302 Identities=10% Similarity=0.138 Sum_probs=204.4
Q ss_pred CCCCCCcccccccccccccccccccccccccc----c------cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCC
Q 011257 2 DNGGGSSEAAAQPLEWKFSQVFGERTAGEEVQ----E------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG 71 (490)
Q Consensus 2 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----h------~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~ 71 (490)
.+++|--|+...+.-|++.|. +-+.-.++. | .-.-+.+.++.+|++|+.|+..|.|..+|+.++...
T Consensus 88 ~e~~G~le~e~~EkT~~v~Q~--~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~- 164 (545)
T KOG1272|consen 88 PETAGYLEAEGLEKTYKVRQD--DIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH- 164 (545)
T ss_pred cccCCcccccCCcceeeeEHh--hhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee-
Confidence 567888899999999999984 222211111 1 233467888999999999999999999999887632
Q ss_pred CcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEE
Q 011257 72 GQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV 151 (490)
Q Consensus 72 ~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~ 151 (490)
.++.-. +.|.++.|.. +. .+++......+.|||-.+-++.++
T Consensus 165 ----------------------~Ei~v~-------------Etv~Dv~~LH--ne-q~~AVAQK~y~yvYD~~GtElHCl 206 (545)
T KOG1272|consen 165 ----------------------FEINVM-------------ETVRDVTFLH--NE-QFFAVAQKKYVYVYDNNGTELHCL 206 (545)
T ss_pred ----------------------eeeehh-------------hhhhhhhhhc--ch-HHHHhhhhceEEEecCCCcEEeeh
Confidence 222221 5688899984 33 355555678999999887776665
Q ss_pred eeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccc
Q 011257 152 FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA 231 (490)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~ 231 (490)
..... +. .+.|.|..- +|++++..|-++.-||..+.-. ..+ ..
T Consensus 207 k~~~~----------v~-------rLeFLPyHf------------LL~~~~~~G~L~Y~DVS~GklV-------a~~-~t 249 (545)
T KOG1272|consen 207 KRHIR----------VA-------RLEFLPYHF------------LLVAASEAGFLKYQDVSTGKLV-------ASI-RT 249 (545)
T ss_pred hhcCc----------hh-------hhcccchhh------------eeeecccCCceEEEeechhhhh-------HHH-Hc
Confidence 44332 11 567778776 7889999999999884333211 111 22
Q ss_pred cccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
-.+.+..++-+|-...+-+| ..|+|.+|......... .+..|.++|.++++.++| ++++|.+.|..++||
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIW 320 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIW 320 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcceEEECCCC-cEEeecccccceeEe
Confidence 23566778889988889999 89999999998666554 456899999999999999 999999999999999
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCC--ceeeeeeecccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG--PVATFQVHEHLRPK 388 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~ 388 (490)
|++.-.. +.++... -+...+++|..| +||.+-...+.||.=...+. .-..+-.|...
T Consensus 321 DlR~~~q----l~t~~tp-------------~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~--- 379 (545)
T KOG1272|consen 321 DLRNFYQ----LHTYRTP-------------HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCG--- 379 (545)
T ss_pred eeccccc----cceeecC-------------CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccC---
Confidence 9998542 2222221 356788898655 45555445899995332121 11111112111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeecCCe
Q 011257 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 421 (490)
..|..+.|.|-...|-.|-..|-
T Consensus 380 ----------~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 380 ----------GPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ----------cccccceeccHHHeeeccccCCc
Confidence 12557888886666655554443
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2e-13 Score=130.01 Aligned_cols=171 Identities=11% Similarity=0.172 Sum_probs=103.3
Q ss_pred eEEEecCCCCEEEE-e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCCeEEEEeC-
Q 011257 237 NSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM- 312 (490)
Q Consensus 237 ~~i~~~~~~~~l~~-~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~- 312 (490)
...+|+|||+.|+. . .++...+|.+........ .+..+........|+||| +.|+..+ .+|...+|.+
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEE
Confidence 45789999988775 3 577666665432222222 233344455678899999 6666554 3566666654
Q ss_pred -CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C---CeEEEEeccCCCCceeeeeeeccccc
Q 011257 313 -RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRP 387 (490)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d---~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (490)
.++.. ..+.... ......+|||||++|+..+ + ..|.+||+.. ++. ..+.....
T Consensus 315 ~~~g~~-----~~lt~~g------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~~--- 372 (427)
T PRK02889 315 ASGGAA-----QRVTFTG------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTTR--- 372 (427)
T ss_pred CCCCce-----EEEecCC------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCCC---
Confidence 33321 1111111 2234578999999998753 2 3799999985 443 33322111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
.....|+|||+.|+.++.++ .+.+.++. |+. ...+..+.+.+...+|+|-
T Consensus 373 -------------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~-~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 373 -------------DESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRI-KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -------------ccCceECCCCCEEEEEEecCCCEEEEEEECC-CCc-eEEeecCCCCCCCCccCCC
Confidence 12679999999998877544 35566664 433 3556566677888888874
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.4e-13 Score=129.86 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=105.7
Q ss_pred EEEecCCCCEEEEe--cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCCe--EEEE
Q 011257 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IRLI 310 (490)
Q Consensus 238 ~i~~~~~~~~l~~~--~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~iw 310 (490)
+.+|+|||+.++.. .++ .|++||+.++. ... +..+......++|+|+| +.|+..+ .+|. |.++
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~--------lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTR--------LTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRV 321 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEE--------CccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 56788888877643 333 68999987443 322 33344445678999999 7776655 4454 6666
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--C--CeEEEEeccCCCCceeeeeeecccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d--~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
|+.+++. ..+.... .....++|+|||++|+..+ + ..|.+||+.. ++.. .+.... .
T Consensus 322 dl~~g~~-----~~lt~~g------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~- 380 (433)
T PRK04922 322 AASGGSA-----ERLTFQG------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPGS-L- 380 (433)
T ss_pred ECCCCCe-----EEeecCC------------CCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCCC-C-
Confidence 7766542 1221111 2344689999999998742 2 3699999975 4433 332211 1
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecC---CeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
.....|+|||++|+..+.+ +.|.++++..+. ...+..+.+.+...+|+|
T Consensus 381 --------------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~--~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 --------------DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV--RQRLVSADGEVREPAWSP 432 (433)
T ss_pred --------------CCCceECCCCCEEEEEEecCCceEEEEEECCCCc--eEEcccCCCCCCCCccCC
Confidence 1267899999998877653 468888886443 355555666778888887
No 217
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=4.1e-14 Score=120.02 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=135.0
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
.++++...|+|++||-. ....+..+ .++...++.+.|.. ....+.+| .||+|++||++...+..++
T Consensus 42 ~vav~lSngsv~lyd~~-------tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~--- 110 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKG-------TGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI--- 110 (376)
T ss_pred eEEEEecCCeEEEEecc-------chhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe---
Confidence 58889999999999911 12233333 67778888888876 45667777 8999999999976655443
Q ss_pred CCCccCCCC-CceEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 274 KPANMEDLT-EVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 274 ~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
....+. .+..+++..-.+ +++++|+. +-.+.+||+|..+.. ++.+. ..|...|++++
T Consensus 111 ---~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~---l~~~~-----------eSH~DDVT~lr 172 (376)
T KOG1188|consen 111 ---SWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQL---LRQLN-----------ESHNDDVTQLR 172 (376)
T ss_pred ---eccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccch---hhhhh-----------hhccCcceeEE
Confidence 234444 566777777666 78888865 678999999987542 23332 33558899999
Q ss_pred ECC-CCCEEEEEc-CCeEEEEeccCCCC---ceeeeeeeccccccccccccCCCccceeeEEEcCCC-CEEEEeecCCeE
Q 011257 349 FAR-NGRHILSRD-YMTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 422 (490)
Q Consensus 349 ~sp-~g~~l~sg~-d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i 422 (490)
|+| +-..|++|+ ||.|.+||++.+.+ ++.++.... .|..+.|..++ +.|.+-+.....
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~s----------------SI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGS----------------SIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccc----------------eeeeeeeecCCcceEEEEEccCce
Confidence 999 567888885 79999999985322 111121111 14588999877 458888889999
Q ss_pred EEEecCCCce
Q 011257 423 RVFGCSEGSA 432 (490)
Q Consensus 423 ~vw~~~~~~~ 432 (490)
.+|+++.+..
T Consensus 237 ~~~ele~~~~ 246 (376)
T KOG1188|consen 237 AIYELEDGSE 246 (376)
T ss_pred eEEEccCCCh
Confidence 9999998764
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.4e-14 Score=123.98 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=138.5
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEE
Q 011257 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (490)
Q Consensus 39 ~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v 118 (490)
.+++|+.+|..||+|+.||.+|||++.... .+.....|. +.|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-----------------------t~l~e~~~~------------~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-----------------------TILEEIAHH------------AEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-----------------------hhhhhHhhc------------Cccccc
Confidence 899999999999999999999999976544 234456666 779999
Q ss_pred EEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCcc
Q 011257 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (490)
Q Consensus 119 ~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l 198 (490)
.|+| ||..|++-+.| ..+||+++++........... ......+.|+.|+.. . .-++
T Consensus 193 ~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k-------------~~~~~~cRF~~d~~~-~-------~l~l 248 (398)
T KOG0771|consen 193 DFSP--DGKFLASIGAD-SARVWSVNTGAALARKTPFSK-------------DEMFSSCRFSVDNAQ-E-------TLRL 248 (398)
T ss_pred eeCC--CCcEEEEecCC-ceEEEEeccCchhhhcCCccc-------------chhhhhceecccCCC-c-------eEEE
Confidence 9997 77799999999 999999999843332221100 000113344444421 0 0022
Q ss_pred c-cCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCC
Q 011257 199 F-PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (490)
Q Consensus 199 ~-~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~ 276 (490)
+ ....-+.|+.|++ .........+..+. ......|.+++.+++|++++.| .||.|-+++...- +....+
T Consensus 249 aa~~~~~~~v~~~~~-~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l-q~~~~v----- 319 (398)
T KOG0771|consen 249 AASQFPGGGVRLCDI-SLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL-QRLQYV----- 319 (398)
T ss_pred EEecCCCCceeEEEe-eeeccccccchhhh--hhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee-eeeEee-----
Confidence 2 2234455565552 11111111111111 1112578999999999999999 8999999999833 333332
Q ss_pred ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
-..|...|+.+.|+|+. +.+++-+.|.+..+..+.-
T Consensus 320 -k~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 -KEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -hhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 36799999999999998 9999999999988887765
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.4e-13 Score=126.03 Aligned_cols=169 Identities=10% Similarity=0.077 Sum_probs=105.0
Q ss_pred eeEEEecCCCCEEEEe--cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CC--eEE
Q 011257 236 INSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIR 308 (490)
Q Consensus 236 v~~i~~~~~~~~l~~~--~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~ 308 (490)
+...+|+|||+.|+.. .++ .|++||+.+. ... .+..+........|+||| +.|+..+. +| .|+
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~--------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy 317 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG-TTT--------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLY 317 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCC-ceE--------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeEE
Confidence 3456788998877643 344 4777788743 322 234455556778999999 77766653 33 688
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C---CeEEEEeccCCCCceeeeeeecc
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d---~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
++|+..++. +.+.... ..+....|+|||++|+... + ..|.+||+.. .....+....
T Consensus 318 ~~d~~g~~~-----~~lt~~~------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~~- 377 (435)
T PRK05137 318 VMNADGSNP-----RRISFGG------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSGF- 377 (435)
T ss_pred EEECCCCCe-----EEeecCC------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCCC-
Confidence 888776542 2222111 3456688999999998752 2 4678888753 3333332111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeecC------CeEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
. +..+.|+|||+.|+..+.+ ..++++++..+.. ..+.. ...+...+|+|-
T Consensus 378 ~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 378 L---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVPT-PGDASDPAWSPL 433 (435)
T ss_pred C---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEccC-CCCccCcccCCC
Confidence 1 1278999999998876543 2588888876644 33432 344677788763
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.7e-12 Score=109.32 Aligned_cols=181 Identities=9% Similarity=0.184 Sum_probs=125.4
Q ss_pred CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCc
Q 011257 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (490)
Q Consensus 205 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (490)
..|-||| ....++...+ ....+|.++.+.++ .+++.-.+.|++|.....-+....++. ......
T Consensus 75 NkviIWD-------D~k~~~i~el--~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkG 138 (346)
T KOG2111|consen 75 NKVIIWD-------DLKERCIIEL--SFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKG 138 (346)
T ss_pred ceEEEEe-------cccCcEEEEE--EeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeec-----ccCCCc
Confidence 4789999 2222233222 34478888888765 566667788999998855444444321 122333
Q ss_pred eEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-C
Q 011257 285 ITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M 362 (490)
Q Consensus 285 v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~ 362 (490)
+.+++-+.+. .+||.-+ .-|.|.|-|+...+.. +... ...|...|.+++.+-+|..+|+++. |
T Consensus 139 lC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~~~~--~p~~------------I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 139 LCSLCPTSNK-SLLAFPGFKTGQVQIVDLASTKPN--APSI------------INAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred eEeecCCCCc-eEEEcCCCccceEEEEEhhhcCcC--CceE------------EEcccCceeEEEEcCCccEEEEeccCc
Confidence 4444444443 4555444 4699999999875421 1123 3445589999999999999999875 4
Q ss_pred -eEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 363 -TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 363 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
-|||||..+ +.+++.++-...... |.+++|||+..+||++|+.|+|+|+.++..
T Consensus 204 TLIRIFdt~~-g~~l~E~RRG~d~A~-------------iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 204 TLIRIFDTED-GTLLQELRRGVDRAD-------------IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEEEcCC-CcEeeeeecCCchhe-------------EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 589999997 898888875544322 569999999999999999999999999864
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1e-13 Score=115.92 Aligned_cols=151 Identities=19% Similarity=0.342 Sum_probs=105.3
Q ss_pred eEEEecCCCCEEEEe-c---C-------CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEE--EeC
Q 011257 237 NSISNNSDGETFISA-D---D-------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSS 303 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~-~---d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~ 303 (490)
..+.|+++|..|+.- . | +...+|.++..+.....+ .+. ..++|.+++|+|++ +.|++ |..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 357899999888763 2 1 235566664333333322 122 24569999999999 66544 446
Q ss_pred CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc----CCeEEEEeccCCCCceeee
Q 011257 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~----d~~i~iwd~~~~~~~~~~~ 379 (490)
++.|.+||++... +..+.. ..+..+.|+|+|++|++++ .|.|.+||.+. .+.+...
T Consensus 82 ~~~v~lyd~~~~~-----i~~~~~--------------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 82 PAKVTLYDVKGKK-----IFSFGT--------------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred CcccEEEcCcccE-----eEeecC--------------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 7899999997322 234432 4578899999999999863 27899999995 6666655
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeec------CCeEEEEecCCCce
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCSEGSA 432 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg~i~vw~~~~~~~ 432 (490)
.... +..++|+|||++|++++. |+.++||++. |+.
T Consensus 142 ~~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~ 182 (194)
T PF08662_consen 142 EHSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRL 182 (194)
T ss_pred ccCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeE
Confidence 4332 248999999999998874 7889999986 544
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.4e-13 Score=118.93 Aligned_cols=280 Identities=12% Similarity=0.111 Sum_probs=181.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|..++|.-+++.+.+...+.|..+....+....+.....-.. ......+.+. -..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~--~~~l~~~~I~---------------------gl~ 112 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK--TVSLGTKSIK---------------------GLK 112 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc--cccccccccc---------------------chh
Confidence 66888999866666666666677788877777665443320000 0000001111 001
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEE-EEe-cC--CcEEEEEcCCCCcee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DD--LRINLWNLEISNQSF 268 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d--~~i~~wd~~~~~~~~ 268 (490)
..+..|+++-.+|.+.+|. ....+... .....+ .-...+..+.-++..+.+ ++| .. ..+++||+++..+.+
T Consensus 113 ~~dg~Litc~~sG~l~~~~-~k~~d~hs--s~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRH-DKSGDLHS--SKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred hcCCEEEEEecCCcEEEEe-ccCCcccc--ccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 1233688889999999998 33222111 011111 111445556666654444 446 56 789999999775555
Q ss_pred eeeecCCCccC-CCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 269 NIVDVKPANME-DLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 269 ~~~~~~~~~~~-~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
..-.++...+. .-.-.++++.|-|. . ..|++++.-+.+|+||.+.++ +|+..|.-.+ .+++
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qR---RPV~~fd~~E------------~~is 251 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQR---RPVAQFDFLE------------NPIS 251 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccC---cceeEecccc------------Ccce
Confidence 43333222221 12345678899887 5 899999999999999999764 4466666554 6899
Q ss_pred EEEECCCCCEEEEEcC-CeEEEEeccCCCCceee-eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
++...|+|++|++|+. +.+..||++. ++.+.. +.+-.+. |.++..+|.+++|++++-|..||
T Consensus 252 ~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGs---------------irsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 252 STGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGS---------------IRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred eeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCC---------------cceEEEcCCCceEEeeccceeEE
Confidence 9999999999999976 9999999997 555544 6655554 34899999999999999999999
Q ss_pred EEecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 424 vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
|+|+++.+.....+- ....+.+.+.++-+
T Consensus 316 IhD~ktrkll~kvYv--Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 316 IHDIKTRKLLHKVYV--KSRLTFILLRDDVN 344 (412)
T ss_pred Eeecccchhhhhhhh--hccccEEEecCCcc
Confidence 999998655322222 34567777766543
No 223
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.60 E-value=5.1e-11 Score=110.20 Aligned_cols=286 Identities=12% Similarity=0.119 Sum_probs=163.5
Q ss_pred cceeEEEEeecCCCcEEEEEeC----cCeEEEEEccC--CeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 113 EKINKIRWCQSANSALYLLSTN----DKTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~----dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
.....++++| ++.+|+++.. ++.|..|++.. +++..+...... -..|..++++|+++
T Consensus 37 ~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~-------------g~~p~~i~~~~~g~-- 99 (345)
T PF10282_consen 37 ENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG-------------GSSPCHIAVDPDGR-- 99 (345)
T ss_dssp SSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES-------------SSCEEEEEECTTSS--
T ss_pred CCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC-------------CCCcEEEEEecCCC--
Confidence 3456688876 5568877755 57999998886 455554443311 12233678899999
Q ss_pred ccccccCCCCccccC-CCCCcEEEeeeecccccccccceeeee------ccccccceeEEEecCCCCEEEEe--cCCcEE
Q 011257 187 ERNFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSDGETFISA--DDLRIN 257 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~-~~~g~v~iw~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (490)
+|+++ -.+|.+.++++.............+.. .........++.++|+++++++. ....|.
T Consensus 100 ----------~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 100 ----------FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp ----------EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ----------EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 55544 568999998843221111111100000 01123456789999999998886 567899
Q ss_pred EEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CccccccccceeccccCCCccc
Q 011257 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRS 335 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 335 (490)
+|++......+..... ..+ ......+.++|+|++..++++...+++|.++++. .+.. +.+..+......
T Consensus 170 ~~~~~~~~~~l~~~~~--~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~--~~~~~~~~~~~~---- 240 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDS--IKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL--TEIQTISTLPEG---- 240 (345)
T ss_dssp EEEE-TTS-TEEEEEE--EEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE--EEEEEEESCETT----
T ss_pred EEEEeCCCceEEEeec--ccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce--eEEEEeeecccc----
Confidence 9999755422211100 012 2345678999999994555666678999999988 3321 111111111000
Q ss_pred cccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeecc-ccccccccccCCCccceeeEEEcCCCCE
Q 011257 336 FFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGR 412 (490)
Q Consensus 336 ~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 412 (490)
+.+ ......|+++|||++|.++. .+.|.+|+++.....+..+..-.. .. . -..++++|+|++
T Consensus 241 -~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~----------~---Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 241 -FTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK----------F---PRHFAFSPDGRY 305 (345)
T ss_dssp -SCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS----------S---EEEEEE-TTSSE
T ss_pred -ccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC----------C---ccEEEEeCCCCE
Confidence 000 12578899999999999864 489999999532333433322111 00 0 138999999999
Q ss_pred EEEee-cCCeEEEEecC--CCceeeeEeccCCCceEEEEE
Q 011257 413 VATGS-YSNLFRVFGCS--EGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 413 l~s~~-~dg~i~vw~~~--~~~~~~~~~~~~~~~v~~~~~ 449 (490)
|+++. .++.|.+|+++ +|......-...-....|+.|
T Consensus 306 l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 306 LYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 98887 57789999874 565422211122344555554
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1e-12 Score=112.91 Aligned_cols=159 Identities=11% Similarity=0.193 Sum_probs=118.2
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe--CCCeEEEEe
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd 311 (490)
..|.++.++. +.|+.+-...|++||++.-. .++.++ ....+...+..+.+++.+ .+++.-+ ..|.|.+||
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~IyIydI~~Mk-lLhTI~----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEESIYIYDIKDMK-LLHTIE----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEcc--ceEEEEEcccEEEEecccce-eehhhh----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence 6677887765 45777733339999998544 333321 223456667777777776 5776543 368999999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-C-eEEEEeccCCCCceeeeeeeccccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
..+-+. ...+..|+ +++-+++|+++|.+||++++ | .|||+.+.. ++.+..++-....++
T Consensus 160 ~~nl~~----v~~I~aH~------------~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~-- 220 (391)
T KOG2110|consen 160 TINLQP----VNTINAHK------------GPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS-- 220 (391)
T ss_pred ccccee----eeEEEecC------------CceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE--
Confidence 987543 35555554 89999999999999999987 5 579999986 888888875544332
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
|.+++|+||+++|++.+..++|+||.++..
T Consensus 221 -----------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 221 -----------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 569999999999999999999999999753
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.3e-11 Score=104.09 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=87.1
Q ss_pred eeEEEecCCCCEEEE-e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCe-EEEEeC
Q 011257 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDM 312 (490)
Q Consensus 236 v~~i~~~~~~~~l~~-~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~ 312 (490)
+.+++-..+..+||. | .-|.|++-|+...... .|.....|...|.|++.+-+| .++||++..|+ |||||.
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt 211 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDT 211 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEc
Confidence 333333334444554 4 6899999999854431 111357899999999999999 99999999997 799999
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccC
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~ 371 (490)
.+++.+ ..+....+. ..|.+++|||++.+|++++| |++.|+.++.
T Consensus 212 ~~g~~l----~E~RRG~d~----------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 212 EDGTLL----QELRRGVDR----------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCcEe----eeeecCCch----------heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999764 344332221 57999999999999999998 9999999974
No 226
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.9e-13 Score=116.91 Aligned_cols=290 Identities=12% Similarity=0.116 Sum_probs=182.0
Q ss_pred ccccccccccccccc----cccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCc
Q 011257 14 PLEWKFSQVFGERTA----GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~----~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (490)
..+|+..|+.-.+.+ .....|...|.|++|.....+|.+|..+++|.+-|+++.+.+
T Consensus 80 ~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi------------------- 140 (609)
T KOG4227|consen 80 GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI------------------- 140 (609)
T ss_pred eeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee-------------------
Confidence 356888887654442 234568899999999999999999999999999999987743
Q ss_pred cccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE--EEEeeeccCCCcCCCCCCc
Q 011257 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~ 167 (490)
++..-.... +.|..+..+|. .+.|++.+.++.|.+||.+.... ..++..+. +.
T Consensus 141 --~V~~~~~~~------------~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~--------~~- 195 (609)
T KOG4227|consen 141 --YVANENNNR------------GDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS--------GK- 195 (609)
T ss_pred --eeecccCcc------------cceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCC--------Cc-
Confidence 111111122 67999999984 46899999999999999986541 11111110 00
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
....+.|.|.... +|++.+..+-+.+||+.... ..........-+......-.++.|+|.|+.
T Consensus 196 -----~F~t~~F~P~~P~-----------Li~~~~~~~G~~~~D~R~~~-~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 196 -----NFYTAEFHPETPA-----------LILVNSETGGPNVFDRRMQA-RPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred -----cceeeeecCCCce-----------eEEeccccCCCCceeecccc-chHHhhhccccCcccchhhhheeeCCCCCe
Confidence 0014456665443 78899999999999932221 111111110001111223356789999999
Q ss_pred EEEe-cCCcEEEEEcCCCCceeee-eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 248 FISA-DDLRINLWNLEISNQSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
|++- ....-.+||+-. ..++.+ .+-.+ .-......+.+++|..+. .+++|+.+-.|++|.+.......- .+-
T Consensus 259 ~msiRR~~~P~~~D~~S-~R~~V~k~D~N~-~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G--~~~ 332 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFIS-QRCFVLKSDHNP-NGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYG--FTQ 332 (609)
T ss_pred ehhhhccCCCEEeeeec-ccceeEeccCCC-Ccceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccC--ccc
Confidence 9887 555666788873 233221 00000 001123346678888764 699999999999999875321100 011
Q ss_pred ccc---------cCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEecc
Q 011257 326 EEQ---------EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (490)
Q Consensus 326 ~~~---------~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~ 370 (490)
-++ -......++++|..-+..+.|+|...+|++.. .+.++||.-.
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 111 01123456788999999999999887777754 5899999754
No 227
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=9.3e-11 Score=101.32 Aligned_cols=295 Identities=12% Similarity=0.177 Sum_probs=181.0
Q ss_pred cccccccccccccccccccccccccccEEEEEECCCCCEEEEecC---CCcEEEEEecCC--CCCCCcccccccccceee
Q 011257 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDT--RDNGGQRRDLEMMDYSMS 85 (490)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~---dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~ 85 (490)
+.....|++..--++....+.+.+.+.++=|+|+|++++|.++.. +|.|..|.++.. +.. +.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~l----------- 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FL----------- 81 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Ee-----------
Confidence 556778999965677777788889999999999999999998864 477888888753 210 00
Q ss_pred cCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEe-CcCeEEEEEccC-CeEEEEeeeccCCCcCCC
Q 011257 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAG 163 (490)
Q Consensus 86 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~-~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~ 163 (490)
-.....++. -..++++ +++++++++. .-|.|.++-++. |.+........+
T Consensus 82 ------n~~~~~g~~--------------p~yvsvd--~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h------ 133 (346)
T COG2706 82 ------NRQTLPGSP--------------PCYVSVD--EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH------ 133 (346)
T ss_pred ------eccccCCCC--------------CeEEEEC--CCCCEEEEEEccCceEEEEEcccCCccccceeeeec------
Confidence 001122222 3567776 4677877764 457888888865 433222111100
Q ss_pred CCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC
Q 011257 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (490)
Q Consensus 164 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (490)
.|. . ... ......+....+.|
T Consensus 134 ------------------~g~----------------------------------~--p~~-----rQ~~~h~H~a~~tP 154 (346)
T COG2706 134 ------------------TGS----------------------------------G--PHE-----RQESPHVHSANFTP 154 (346)
T ss_pred ------------------CCC----------------------------------C--CCc-----cccCCccceeeeCC
Confidence 000 0 000 00113356788999
Q ss_pred CCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCcccccc
Q 011257 244 DGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDT 320 (490)
Q Consensus 244 ~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 320 (490)
++++|++. .-..|.+|++..+..... .+..+ .-....+.|.|+|++ ++... +--+++|.+|.........+
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999997 466799999983332211 11122 234556899999999 66554 44599999999887411111
Q ss_pred ccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC--CeEEEEeccCCCCceeeeeeeccccccccccccCCCc
Q 011257 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (490)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
.+..+..-... |.+ ..+..+|..+|||++|.++.. ..|.+|.+...+..+..+........ .
T Consensus 229 ~lQ~i~tlP~d-----F~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~---------~- 292 (346)
T COG2706 229 ELQTIDTLPED-----FTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ---------F- 292 (346)
T ss_pred EeeeeccCccc-----cCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc---------C-
Confidence 11111110000 111 146788999999999999853 78999999864454444333221100 0
Q ss_pred cceeeEEEcCCCCEEEEeecC-CeEEEEecCC
Q 011257 399 FDKFECCLSGDGGRVATGSYS-NLFRVFGCSE 429 (490)
Q Consensus 399 ~~v~~~~~s~d~~~l~s~~~d-g~i~vw~~~~ 429 (490)
=..+.|+++|++|+++..+ ..|.+|..+.
T Consensus 293 --PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 293 --PRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred --CccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 0278999999999988854 5688887763
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=6.4e-12 Score=115.88 Aligned_cols=297 Identities=10% Similarity=0.089 Sum_probs=166.6
Q ss_pred CEE-EEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCC
Q 011257 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (490)
Q Consensus 48 ~~l-atg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~ 126 (490)
+++ ++-..++.|.+.|..+.+. +..+.... ..-..+.|+| ++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~s~--Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKFSP--DG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE-TT---S
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEecC--CC
Confidence 344 4555789999999887652 33343322 2223466764 77
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccC-CCCC
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP-GGVS 205 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~-~~~g 205 (490)
+++++++.||.|.++|+.+.+......... .+..+++++||+ +++++ ...+
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~----------------~~~~i~~s~DG~------------~~~v~n~~~~ 100 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGG----------------NPRGIAVSPDGK------------YVYVANYEPG 100 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SS----------------EEEEEEE--TTT------------EEEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCC----------------CcceEEEcCCCC------------EEEEEecCCC
Confidence 899999999999999999998766554432 233889999999 56655 5788
Q ss_pred cEEEeeeecccccccccceeeee---ccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIY---AHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMED 280 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 280 (490)
.+.++| ....+. .+..... .......+..+..+|....++.. +.+.|-+.|....... ... ...
T Consensus 101 ~v~v~D-~~tle~---v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~------~i~ 169 (369)
T PF02239_consen 101 TVSVID-AETLEP---VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVT------TIK 169 (369)
T ss_dssp EEEEEE-TTT--E---EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEE------EEE
T ss_pred ceeEec-cccccc---eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-cee------eec
Confidence 999998 222111 1111110 01133466778788888866655 5688888887744322 111 112
Q ss_pred CCCceEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCccccccc----------cceec----------cccCCC-------
Q 011257 281 LTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTH----------SKLFE----------EQEAPG------- 332 (490)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~----------~~~~~----------~~~~~~------- 332 (490)
.........|+|++ ++|+. ...+..|-++|..+++..... ...+. .+....
T Consensus 170 ~g~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~ 248 (369)
T PF02239_consen 170 VGRFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT 248 (369)
T ss_dssp --TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-
T ss_pred ccccccccccCccc-ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccC
Confidence 24456788999999 66554 556778999998877543100 00000 000000
Q ss_pred -cc-----------ccccccccceEEEEECCCCCEEEEE----cC-CeEEEEeccCCCCceeeeeeeccccccccccccC
Q 011257 333 -TR-----------SFFTEIIASISDIKFARNGRHILSR----DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 395 (490)
Q Consensus 333 -~~-----------~~~~~h~~~i~~l~~sp~g~~l~sg----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (490)
+. ..+.....+ .-+.-+|+++++.+. .+ ++|.++|.++ .+.+.++....+..
T Consensus 249 ~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~--------- 317 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKR--------- 317 (369)
T ss_dssp -TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT-----------
T ss_pred CccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCc---------
Confidence 00 000111122 556779999999986 44 9999999987 55555554333311
Q ss_pred CCccceeeEEEcCCCCEEEEeec--CCeEEEEecCCCceeeeEec
Q 011257 396 DSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLE 438 (490)
Q Consensus 396 ~~~~~v~~~~~s~d~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~ 438 (490)
+..+.|++||+.+..... ++.|.|||..+.+. ...+.
T Consensus 318 -----~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~-~~~i~ 356 (369)
T PF02239_consen 318 -----VVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE-KKRIP 356 (369)
T ss_dssp -----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE-EEEEE
T ss_pred -----EeccEECCCCCEEEEEEecCCCEEEEEECCCcEE-EEEEE
Confidence 348999999997665554 34799999999876 45544
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=1.3e-14 Score=127.91 Aligned_cols=218 Identities=13% Similarity=0.113 Sum_probs=168.3
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
..|..+.|+.+|+ +++.|+..|.+..+| |.... ....+ .-...|.++.|-...+++|.+
T Consensus 130 FGPY~~~ytrnGr------------hlllgGrKGHlAa~D--w~t~~--L~~Ei-----~v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGR------------HLLLGGRKGHLAAFD--WVTKK--LHFEI-----NVMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCcc------------EEEecCCccceeeee--cccce--eeeee-----ehhhhhhhhhhhcchHHHHhh
Confidence 4556789999999 899999999999988 22111 11111 112567888998889999999
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
....+++||-. +..... +. ....|..+.|-|.. .+|++++..|.++.-|+.+|+++ ..+....
T Consensus 189 QK~y~yvYD~~-GtElHC--------lk-~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklV----a~~~t~~-- 251 (545)
T KOG1272|consen 189 QKKYVYVYDNN-GTELHC--------LK-RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLV----ASIRTGA-- 251 (545)
T ss_pred hhceEEEecCC-CcEEee--------hh-hcCchhhhcccchh-heeeecccCCceEEEeechhhhh----HHHHccC--
Confidence 88999999976 433322 12 24568899999998 89999999999999999999864 3443333
Q ss_pred CccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
+.+..++-+|-...+-.| +.|+|.+|...+ .+++..+..|.+.+ .++++.++|
T Consensus 252 ----------G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V---------------~siAv~~~G 305 (545)
T KOG1272|consen 252 ----------GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPV---------------SSIAVDRGG 305 (545)
T ss_pred ----------CccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCc---------------ceEEECCCC
Confidence 567888888887788888 569999999997 88999898998874 499999999
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCC
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 455 (490)
+|+||++.|..++|||++.-.. +.++.. ..+...+++|..|..
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~SqkglL 348 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQKGLL 348 (545)
T ss_pred cEEeecccccceeEeeeccccc-cceeec-CCCccccccccccce
Confidence 9999999999999999997765 344433 456788888876654
No 230
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.7e-12 Score=123.54 Aligned_cols=207 Identities=11% Similarity=0.119 Sum_probs=128.3
Q ss_pred cccccEEEEEECCCCCEEEEec---CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 33 QEVDIISAIEFDKSGDHLATGD---RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+...+.+.+|||||+.||..+ .+..|.+|++.+++.. .+..+.++
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------------------~l~~~~~~---------- 244 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------------QVASFPRH---------- 244 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------EccCCCCC----------
Confidence 4566899999999999998754 2457899998766421 12223333
Q ss_pred eeccceeEEEEeecCCCcEEEEE-eCcC--eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 110 EIEEKINKIRWCQSANSALYLLS-TNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~-~~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
+..++|+| +|+.|+.. +.+| .|.+||+.+++...+..
T Consensus 245 -----~~~~~~SP--DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------------------------------- 284 (429)
T PRK03629 245 -----NGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--------------------------------- 284 (429)
T ss_pred -----cCCeEECC--CCCEEEEEEcCCCCcEEEEEECCCCCEEEccC---------------------------------
Confidence 34578997 66677654 4444 57888887765433210
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c-CCcEEEE--EcC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLW--NLE 262 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~~w--d~~ 262 (490)
+...+....|+|||+.|+.. + ++...+| |+.
T Consensus 285 ---------------------------------------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 285 ---------------------------------------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred ---------------------------------------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence 11233567899999988765 3 4444555 554
Q ss_pred CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
.. ...+ +...........|+|+| +.|+..+.+ ..|.+||+.+++. ..+...
T Consensus 320 ~g-~~~~--------lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----~~Lt~~----------- 373 (429)
T PRK03629 320 GG-APQR--------ITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----QVLTDT----------- 373 (429)
T ss_pred CC-CeEE--------eecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCCe-----EEeCCC-----------
Confidence 32 2222 12223345578899999 777665543 3588899987753 222211
Q ss_pred cccceEEEEECCCCCEEEEEc-C---CeEEEEeccCCCCceeeeeeeccc
Q 011257 340 IIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg~-d---~~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
.......|+|||++|+.++ + ..+.+++++ +.....+..+...
T Consensus 374 --~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~--G~~~~~l~~~~~~ 419 (429)
T PRK03629 374 --FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQ 419 (429)
T ss_pred --CCCCCceECCCCCEEEEEEcCCCceEEEEEECC--CCCeEECccCCCC
Confidence 1124578999999998853 3 347777875 6667777766554
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.2e-12 Score=113.19 Aligned_cols=264 Identities=13% Similarity=0.128 Sum_probs=169.7
Q ss_pred cccccccEEEEEECCCCC--EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 31 EVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~--~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
.+.....|+.++|.-|++ .|...+.+..+..+..+..... ++..........+
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-----------------s~~~~~~~~~l~~-------- 105 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-----------------SSLDDAKTVSLGT-------- 105 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccc-----------------ccccccccccccc--------
Confidence 344567888888887664 4444446666777776655422 1100011122222
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-----EEEEeeeccCCCcCCCCCCccccccccCceEEeccC
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 183 (490)
++|..+... + ..|++|-.+|.+.+|....+. ........+ +. .+.-.+.
T Consensus 106 ----~~I~gl~~~---d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g----------~~-------~~r~~~~- 159 (412)
T KOG3881|consen 106 ----KSIKGLKLA---D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPG----------LY-------DVRQTDT- 159 (412)
T ss_pred ----ccccchhhc---C-CEEEEEecCCcEEEEeccCCccccccceeeecCCc----------ee-------eeccCCC-
Confidence 667777764 3 478889999999999988443 222111110 00 1111111
Q ss_pred CccccccccCCCCccccCCCC--CcEEEeeeecccccccccceeeeecccc--ccceeEEEecCC--CCEEEEe-cCCcE
Q 011257 184 GCGERNFGCASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAH--DYHINSISNNSD--GETFISA-DDLRI 256 (490)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~--g~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~--~~~l~~~-~d~~i 256 (490)
....+++|+.. ..+++||+ ......-..++.+.-.-+- .-.++++.|-+. ...||++ .-+.+
T Consensus 160 ----------~p~Iva~GGke~~n~lkiwdl-e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 160 ----------DPYIVATGGKENINELKIWDL-EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred ----------CCceEecCchhcccceeeeec-ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 22356779988 89999993 2222211111111100111 123457788887 8889999 89999
Q ss_pred EEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccc
Q 011257 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 336 (490)
Q Consensus 257 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (490)
++||.+...+.+..+ .-...+++++...|.+ +++++|..-|.+..+|++.+... ...+.+
T Consensus 229 R~YDt~~qRRPV~~f-------d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~---g~~~kg--------- 288 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQF-------DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLL---GCGLKG--------- 288 (412)
T ss_pred EEecCcccCcceeEe-------ccccCcceeeeecCCC-cEEEEecccchhheecccCceee---ccccCC---------
Confidence 999999776665543 3347889999999999 99999999999999999998653 122333
Q ss_pred ccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeee
Q 011257 337 FTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 337 ~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~ 380 (490)
..+.|++|..+|.+++|++++ |..+||+|+++ .+++....
T Consensus 289 ---~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~kvY 329 (412)
T KOG3881|consen 289 ---ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLHKVY 329 (412)
T ss_pred ---ccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhhhhh
Confidence 348899999999999999964 89999999997 66655443
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=7.2e-13 Score=119.14 Aligned_cols=175 Identities=13% Similarity=0.176 Sum_probs=119.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe--------------EEEEeeeccCCCcCCCCCCccccccccCceE
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--------------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (490)
..|+++.|.|.. ...|+++-.+|.+.++|..... .-.+.........+....+.+ ....++.++
T Consensus 220 tsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~-~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI-GEGSINEFA 297 (636)
T ss_pred cceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe-cccccccee
Confidence 679999999944 5688888999999999874210 001111111111111111111 222456889
Q ss_pred EeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEE
Q 011257 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (490)
Q Consensus 179 ~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~ 257 (490)
|+|||+ +|++.+.||.++|+| ....+. .-.. +..-+...|++|+|||+++++| +|..|.
T Consensus 298 FS~DG~------------~LA~VSqDGfLRvF~-fdt~eL---lg~m----kSYFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 298 FSPDGK------------YLATVSQDGFLRIFD-FDTQEL---LGVM----KSYFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred EcCCCc------------eEEEEecCceEEEee-ccHHHH---HHHH----HhhccceEEEEEcCCccEEEecCCcceEE
Confidence 999999 999999999999999 222221 1111 2223778999999999999999 999999
Q ss_pred EEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC-------------------------------C------------
Q 011257 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-------------------------------H------------ 294 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------------------------~------------ 294 (490)
||.+.. .+.+. .-.+|..+|..++|.|- +
T Consensus 358 VwSf~e-rRVVA-------RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~ 429 (636)
T KOG2394|consen 358 VWSFEE-RRVVA-------RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNR 429 (636)
T ss_pred EEEecc-ceEEE-------eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccc
Confidence 999983 33332 35789999999999830 0
Q ss_pred ----CcEEEEEeCCCeEEEEeCCCccc
Q 011257 295 ----CNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 295 ----~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
...|.+.+.|..+.+||+....+
T Consensus 430 ~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 430 INSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred ccceEEEeecccccceEEEEecchhhc
Confidence 03578889999999999987643
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.5e-11 Score=110.10 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=192.1
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
.-..|+-.+.+.....-....-..++...++|++|+++|.+. +..++|++..+.... +...+. ....+.|+|-..+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~--lt~~~~-~~~~L~fSP~g~y 87 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV--LCVELK-KTYDLLFSPKGNY 87 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE--EEeccc-eeeeeeecccccc
Confidence 334455555333222212211244578899999999998876 558999998877521 112222 6677888887777
Q ss_pred ccccccCCcccce-----------eeee----eeccc---eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeee
Q 011257 93 KTEFQSHEPEFDY-----------LKSL----EIEEK---INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (490)
Q Consensus 93 ~~~~~~h~~~~~~-----------~~~~----~~~~~---V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 154 (490)
+.+++.-..+.+. +.+. .+..+ -.+..|++ + +.+++=-..+.+.+|++.+.+.... .+
T Consensus 88 L~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~--d-Esl~arlv~nev~f~~~~~f~~~~~-kl 163 (566)
T KOG2315|consen 88 LLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSI--D-ESLAARLVSNEVQFYDLGSFKTIQH-KL 163 (566)
T ss_pred cccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccccccc--c-hhhhhhhhcceEEEEecCCccceee-ee
Confidence 6665432211110 1110 00000 02445553 2 2333333346788888876432111 11
Q ss_pred ccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc
Q 011257 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY 234 (490)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
+. .....+.+||.+....+..- ..-..+.=..+++|.+ . ..........+.++..
T Consensus 164 ~~---------------~~i~~f~lSpgp~~~~vAvy-----vPe~kGaPa~vri~~~-~-~~~~~~~~a~ksFFka--- 218 (566)
T KOG2315|consen 164 SV---------------SGITMLSLSPGPEPPFVAVY-----VPEKKGAPASVRIYKY-P-EEGQHQPVANKSFFKA--- 218 (566)
T ss_pred ec---------------cceeeEEecCCCCCceEEEE-----ccCCCCCCcEEEEecc-c-cccccchhhhcccccc---
Confidence 10 01114556665442111000 0012345557888872 2 1111111222233221
Q ss_pred ceeEEEecCCCCEEEE---ec-C---------CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEE-
Q 011257 235 HINSISNNSDGETFIS---AD-D---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY- 300 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~---~~-d---------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~- 300 (490)
.=..+.|++-|.-|+. .+ | .++++.++......+. -...++|.++.|+|++ +-|+.
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~---------L~k~GPVhdv~W~~s~-~EF~Vv 288 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP---------LLKEGPVHDVTWSPSG-REFAVV 288 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe---------cCCCCCceEEEECCCC-CEEEEE
Confidence 2235778887664433 11 3 3577777762222211 1247899999999999 66554
Q ss_pred -EeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE--cC--CeEEEEeccCCCCc
Q 011257 301 -SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY--MTLKLWDINMDSGP 375 (490)
Q Consensus 301 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~d--~~i~iwd~~~~~~~ 375 (490)
|-.-..+.|+|++-.- +..+.. ++-.++-|+|.|++|+.+ ++ |.|.|||+.+ .++
T Consensus 289 yGfMPAkvtifnlr~~~-----v~df~e--------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~ 348 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLRGKP-----VFDFPE--------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKL 348 (566)
T ss_pred EecccceEEEEcCCCCE-----eEeCCC--------------CCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhh
Confidence 4456789999988642 233332 567889999999999874 33 9999999997 888
Q ss_pred eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec------CCeEEEEecCCC
Q 011257 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCSEG 430 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~------dg~i~vw~~~~~ 430 (490)
+..+...... -+.|+|||++++|++. |+.++||++...
T Consensus 349 i~~~~a~~tt-----------------~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 349 IAKFKAANTT-----------------VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccccCCce-----------------EEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 8888766543 6899999999998875 788999998743
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.6e-12 Score=115.60 Aligned_cols=282 Identities=11% Similarity=0.154 Sum_probs=171.1
Q ss_pred eeeeeeccceeEEEEeecCCCcEE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec--c
Q 011257 106 LKSLEIEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--N 182 (490)
Q Consensus 106 ~~~~~~~~~V~~v~~~p~~~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~ 182 (490)
+..+++...-+.|..+| ||.++ ++|..--.|++||+.+..++-....... .+.|-+ |
T Consensus 45 iQdfe~p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae------------------~V~feiLsD 104 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSP--DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE------------------VVDFEILSD 104 (703)
T ss_pred HHhcCCccccceeEecC--CCcEEEEecccCCceEEEEcccceeeeeeccccc------------------ceeEEEecc
Confidence 44445557788899987 66665 4577788999999988665443222211 111111 1
Q ss_pred CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEecCCcEEEEEc
Q 011257 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISADDLRINLWNL 261 (490)
Q Consensus 183 g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~~wd~ 261 (490)
.-. .++.-..|.+|.+-. ..+.... . .-...-.+++++. ...+++.|....|+-+++
T Consensus 105 D~S-----------K~v~L~~DR~IefHa----k~G~hy~--~-----RIP~~GRDm~y~~~scDly~~gsg~evYRlNL 162 (703)
T KOG2321|consen 105 DYS-----------KSVFLQNDRTIEFHA----KYGRHYR--T-----RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL 162 (703)
T ss_pred chh-----------hheEeecCceeeehh----hcCeeee--e-----ecCcCCccccccCCCccEEEeecCcceEEEEc
Confidence 000 122223333333321 0000000 0 0011224555554 344555557777888899
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
++ ++.+. .+....+.++++..++-. .+|++|+.+|.|-.||.+....+ ..+.....- .........
T Consensus 163 Eq-GrfL~-------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv----~~l~~~~~v-~s~pg~~~~ 228 (703)
T KOG2321|consen 163 EQ-GRFLN-------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRV----GTLDAASSV-NSHPGGDAA 228 (703)
T ss_pred cc-ccccc-------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhh----eeeeccccc-CCCcccccc
Confidence 84 44433 233345789999999988 89999999999999999987654 223221110 000011112
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC--CCEEEEeec
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSY 418 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~s~~~ 418 (490)
..|+++.|+.+|-.+++|. .|.+.|||++. .+++..-. |....+ |..+.|.+. ++.|++. +
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~kd-h~~e~p-------------i~~l~~~~~~~q~~v~S~-D 292 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLVKD-HGYELP-------------IKKLDWQDTDQQNKVVSM-D 292 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEccc-CCceeecc-cCCccc-------------eeeecccccCCCceEEec-c
Confidence 4599999999999999995 59999999997 66665443 332221 457888765 4455543 4
Q ss_pred CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 419 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
...++|||-.+|+. ...+.. ...++.+++-|++.+.+++..
T Consensus 293 k~~~kiWd~~~Gk~-~asiEp-t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 293 KRILKIWDECTGKP-MASIEP-TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred hHHhhhcccccCCc-eeeccc-cCCcCceeeecCCceEEEecC
Confidence 57899999999987 455554 455999999999888776643
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.5e-12 Score=124.00 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=122.3
Q ss_pred ccccceeEEEecCCCCEEEEe-c---CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCC
Q 011257 231 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG 305 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~-~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg 305 (490)
.+...+.+.+|+|||+.|+.. . ...|.+||+.++. ...+ ......+...+|+||| +.|+ +.+.+|
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~l--------~~~~g~~~~~~~SPDG-~~la~~~~~~g 262 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RRVV--------ANFKGSNSAPAWSPDG-RTLAVALSRDG 262 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EEEe--------ecCCCCccceEECCCC-CEEEEEEccCC
Confidence 455678899999999998875 2 2459999998543 2222 2223445688999999 6555 567788
Q ss_pred eEEEEeC--CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC--CeEEEEeccCCCCceeeeee
Q 011257 306 SIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 381 (490)
Q Consensus 306 ~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d--~~i~iwd~~~~~~~~~~~~~ 381 (490)
...||.+ ..+. ...+..+. .......|+|||++|+..++ +...||.+...+.....+..
T Consensus 263 ~~~Iy~~d~~~~~-----~~~lt~~~------------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 263 NSQIYTVNADGSG-----LRRLTQSS------------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CceEEEEECCCCC-----cEECCCCC------------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 7666654 4332 12232221 33566789999999886543 66777766532333333322
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
.... ....+|||||++|+..+.++ .|.+||+.+++.. .+... .......|+|||.....
T Consensus 326 ~g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 326 TGSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYILY 387 (427)
T ss_pred CCCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEEE
Confidence 2111 12578999999999777654 6999999988652 33322 33567899999999888
Q ss_pred CccCcc
Q 011257 459 GSLSGV 464 (490)
Q Consensus 459 ~~~~~~ 464 (490)
++...+
T Consensus 388 ~~~~~g 393 (427)
T PRK02889 388 ATQQGG 393 (427)
T ss_pred EEecCC
Confidence 765544
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5.1e-12 Score=121.02 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=122.4
Q ss_pred ccccceeEEEecCCCCEEEEe----cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEE-EEEeCCC
Q 011257 231 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKG 305 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg 305 (490)
.|...+.+.+|+|||+.|+.. .+..|++||+.++. ... +..+.+.+...+|+|+| +.| ++.+.++
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~~~--------l~~~~g~~~~~~~SPDG-~~la~~~~~~g 268 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-REL--------VGNFPGMTFAPRFSPDG-RKVVMSLSQGG 268 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-EEE--------eecCCCcccCcEECCCC-CEEEEEEecCC
Confidence 344567889999999988875 24689999997543 222 23345567788999999 555 5556665
Q ss_pred e--EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC----CeEEEEeccCCCCceeee
Q 011257 306 S--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATF 379 (490)
Q Consensus 306 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d----~~i~iwd~~~~~~~~~~~ 379 (490)
. |.+||+.+++. ..+..+. .......|+|||+.|+..++ ..|.++|+. +.....+
T Consensus 269 ~~~Iy~~d~~~~~~-----~~Lt~~~------------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~l 329 (435)
T PRK05137 269 NTDIYTMDLRSGTT-----TRLTDSP------------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRI 329 (435)
T ss_pred CceEEEEECCCCce-----EEccCCC------------CccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEe
Confidence 5 77778887653 2333221 34567899999999987643 367777876 3334444
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC---CeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
..+... +....|+|||++|+..+.+ ..|.+|++.++.. ..+.. ...+....|+|||+..
T Consensus 330 t~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~spDG~~i 391 (435)
T PRK05137 330 SFGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAPNGRVI 391 (435)
T ss_pred ecCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECCCCCEE
Confidence 332221 1267899999999876643 3688899876543 23322 2356788999999988
Q ss_pred CCCcc
Q 011257 457 PLGSL 461 (490)
Q Consensus 457 ~~~~~ 461 (490)
...+.
T Consensus 392 ~~~~~ 396 (435)
T PRK05137 392 MFFRQ 396 (435)
T ss_pred EEEEc
Confidence 76654
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=2.7e-10 Score=105.40 Aligned_cols=302 Identities=13% Similarity=0.160 Sum_probs=167.7
Q ss_pred ccccccccccccccccccccccccccEEEEEECCCCCEEEEecC----CCcEEEEEecCCCCCCCcccccccccceeecC
Q 011257 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH 87 (490)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 87 (490)
.....|+|+.--++........-....+.++++|++++|++... +|.|..|++.....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g------------------ 74 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG------------------ 74 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT------------------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc------------------
Confidence 44556777432233333333344566788999999999988866 57899999876410
Q ss_pred CccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEe-CcCeEEEEEccC-CeEEEEeeeccCCCcCCCCC
Q 011257 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNG 165 (490)
Q Consensus 88 p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~-~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~ 165 (490)
....+....... .....++++| ++.+++++. .+|.|.++++.. +.+............. ..
T Consensus 75 -~L~~~~~~~~~g------------~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~ 137 (345)
T PF10282_consen 75 -TLTLLNSVPSGG------------SSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG--PN 137 (345)
T ss_dssp -EEEEEEEEEESS------------SCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE--SS
T ss_pred -eeEEeeeeccCC------------CCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC--Cc
Confidence 000111111111 2245577775 666777765 589999999987 4544432211000000 00
Q ss_pred CccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC
Q 011257 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (490)
Q Consensus 166 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (490)
........+-.+.++|+|+. ++++.-....|.+|++ ...... ... ...+........+.++|+|++
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~-----------v~v~dlG~D~v~~~~~-~~~~~~-l~~-~~~~~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRF-----------VYVPDLGADRVYVYDI-DDDTGK-LTP-VDSIKVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSE-----------EEEEETTTTEEEEEEE--TTS-T-EEE-EEEEECSTTSSEEEEEE-TTS
T ss_pred ccccccccceeEEECCCCCE-----------EEEEecCCCEEEEEEE-eCCCce-EEE-eeccccccCCCCcEEEEcCCc
Confidence 00111123337889999994 2333444567888883 222111 111 111112334667899999999
Q ss_pred CEEEEe--cCCcEEEEEcCCCCceeeeee---cCCCccCCCCCceEEEEEcCCCCcEEEE-EeCCCeEEEEeCCC--ccc
Q 011257 246 ETFISA--DDLRINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQ--SAL 317 (490)
Q Consensus 246 ~~l~~~--~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~iwd~~~--~~~ 317 (490)
+++... .++.|.++++......+..+. ..+.... .......++++|+| ++|++ ....+.|.+|++.. +.+
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFT-GENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTL 281 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSC-SSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTE
T ss_pred CEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccc-ccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCce
Confidence 998776 589999999983332222221 1111111 12367899999999 65554 45578999999943 332
Q ss_pred cccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C-CeEEEEeccCCCCceee
Q 011257 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVAT 378 (490)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d-~~i~iwd~~~~~~~~~~ 378 (490)
+.+..+.... ...+.+.++|+|++|+++. + +.|.+|+++.....+..
T Consensus 282 --~~~~~~~~~G------------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 282 --TLVQTVPTGG------------KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp --EEEEEEEESS------------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred --EEEEEEeCCC------------CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 1122222211 3468999999999999873 3 89999998642333433
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.2e-12 Score=122.23 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=121.2
Q ss_pred cccccceeEEEecCCCCEEEEe-c---CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC
Q 011257 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 305 (490)
..+...+.+.+|+|||+.|+.. . ...|++||+..+. ...+ ....+....++|+|+|..++++.+.+|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l--------~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RELV--------ASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EEEe--------ccCCCCccCceECCCCCEEEEEEeCCC
Confidence 3455678899999999998876 2 3469999997443 2221 222334457899999933444555555
Q ss_pred --eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC--Ce--EEEEeccCCCCceeee
Q 011257 306 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATF 379 (490)
Q Consensus 306 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d--~~--i~iwd~~~~~~~~~~~ 379 (490)
.|++||+.+++. ..+..+. ......+|+|||++|+..++ +. |.++|+.. ++ ...+
T Consensus 271 ~~~Iy~~d~~~g~~-----~~lt~~~------------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~l 331 (433)
T PRK04922 271 NPEIYVMDLGSRQL-----TRLTNHF------------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERL 331 (433)
T ss_pred CceEEEEECCCCCe-----EECccCC------------CCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEe
Confidence 599999988753 2332221 33467899999999987653 44 55556653 33 3333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
..+... ...++|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||...
T Consensus 332 t~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 332 TFQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred ecCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCCCCEE
Confidence 222111 12689999999998765433 6999999888653 333 22345667999999987
Q ss_pred CCCccC
Q 011257 457 PLGSLS 462 (490)
Q Consensus 457 ~~~~~~ 462 (490)
...+..
T Consensus 394 ~~~s~~ 399 (433)
T PRK04922 394 LYATRE 399 (433)
T ss_pred EEEEec
Confidence 766554
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.6e-11 Score=114.94 Aligned_cols=167 Identities=12% Similarity=0.176 Sum_probs=99.8
Q ss_pred EEEecCCCCEEEEe--cCCc--EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCC--eEEEE
Q 011257 238 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 310 (490)
Q Consensus 238 ~i~~~~~~~~l~~~--~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~iw 310 (490)
..+|+|||+.|+.. .++. |+++|+.+.. .. .+..+........|+||+ +.++..+ .++ .|.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~--------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LT--------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eE--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 46788888877754 4554 7777876432 22 223344456778999999 6665544 344 46667
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CC--eEEEEeccCCCCceeeeeeecccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM--TLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~--~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
|+.+++. ..+.... ......+|+|||++|+..+ ++ .|.++|+.. ++ ...+......
T Consensus 336 dl~~g~~-----~~Lt~~g------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~~d- 395 (448)
T PRK04792 336 NLASGKV-----SRLTFEG------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTRLD- 395 (448)
T ss_pred ECCCCCE-----EEEecCC------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCCCC-
Confidence 7776653 1121111 1234568999999998752 24 455567664 33 3333221110
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecC-C--eEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
....|+|||+.|+..+.+ | .+++++.+ |+. ...+..+.+.+...+|||
T Consensus 396 ---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~-~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRF-KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECC-CCc-eEECcCCCCCcCCCccCC
Confidence 145899999998876643 3 37777875 443 355656666678888887
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=4e-11 Score=110.64 Aligned_cols=281 Identities=10% Similarity=0.074 Sum_probs=158.7
Q ss_pred cEEE-EEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 127 ALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 127 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
++++ +-..++.|.+.|..+.+.......... ....+.|+|||+ ++++.+.||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---------------~h~~~~~s~Dgr------------~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---------------PHAGLKFSPDGR------------YLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---------------EEEEEE-TT-SS------------EEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---------------ceeEEEecCCCC------------EEEEEcCCC
Confidence 4554 456689999999999887665553321 111567899999 777788899
Q ss_pred cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 283 (490)
.|.++| +...+ ..+....+ .....+++++||++++++ ..+.+.++|.++.+. ++.+............
T Consensus 59 ~vsviD-~~~~~------~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~ 128 (369)
T PF02239_consen 59 TVSVID-LATGK------VVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPES 128 (369)
T ss_dssp EEEEEE-TTSSS------EEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS--
T ss_pred eEEEEE-CCccc------EEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCC
Confidence 999999 32222 22222122 345789999999999987 699999999985544 3333221111122456
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-C
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y 361 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d 361 (490)
.+..+..+|..+.++++.-..+.|.+.|....+... ...+... .......|+|+++|++.+ . .
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~g-------------~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKVG-------------RFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeeccc-------------ccccccccCcccceeeeccccc
Confidence 788888899883344444556889888987653210 1222221 346788999999998875 2 3
Q ss_pred CeEEEEeccCCCCceeeeee----ec---------cc-----c--------cccc----ccccCCCc---------ccee
Q 011257 362 MTLKLWDINMDSGPVATFQV----HE---------HL-----R--------PKLC----DLYENDSI---------FDKF 402 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~----~~---------~~-----~--------~~~~----~~~~~~~~---------~~v~ 402 (490)
+.|.++|..+ ++.+..+.. |. .. . +.+. ........ .+-.
T Consensus 194 n~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~gl 272 (369)
T PF02239_consen 194 NKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGL 272 (369)
T ss_dssp TEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-
T ss_pred ceeEEEeecc-ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcc
Confidence 7999999886 544443321 10 00 0 0000 00000000 0113
Q ss_pred eEEEcCCCCEEEEe----ecCCeEEEEecCCCceeeeEecc-CCCceEEEEEccCCCCCCCCcc
Q 011257 403 ECCLSGDGGRVATG----SYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 403 ~~~~s~d~~~l~s~----~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
-+..+|++++|.+. ...+.|.|+|.++.+. ...+.. ....+..+.|++||...-.+..
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 56789999999887 4558999999998865 345542 2346999999999997766544
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=4.3e-12 Score=106.15 Aligned_cols=116 Identities=16% Similarity=0.368 Sum_probs=86.8
Q ss_pred ccceeEEEecCCCCEEEE--e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC---CCe
Q 011257 233 DYHINSISNNSDGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGS 306 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~--~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~ 306 (490)
..+|.+++|+|+|+.|++ | .+..|.+||++ ...... + +...+..+.|+|+| ++|++++. .|.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~--------~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFS--------F--GTQPRNTISWSPDG-RFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEe--------e--cCCCceEEEECCCC-CEEEEEEccCCCcE
Confidence 356999999999998766 4 57899999997 333322 2 24567889999999 88888864 467
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-------CCeEEEEeccCCCCceeee
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-------d~~i~iwd~~~~~~~~~~~ 379 (490)
|.+||.++.+.+ ..++. ..++.++|+|||++|+++. |+.++||+.. |+.+...
T Consensus 127 l~~wd~~~~~~i----~~~~~--------------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~--G~~l~~~ 186 (194)
T PF08662_consen 127 LEFWDVRKKKKI----STFEH--------------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ--GRLLYKK 186 (194)
T ss_pred EEEEECCCCEEe----ecccc--------------CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec--CeEeEec
Confidence 999999976532 22221 3478999999999999852 5889999996 6666554
Q ss_pred e
Q 011257 380 Q 380 (490)
Q Consensus 380 ~ 380 (490)
.
T Consensus 187 ~ 187 (194)
T PF08662_consen 187 P 187 (194)
T ss_pred c
Confidence 3
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=4.5e-11 Score=114.69 Aligned_cols=147 Identities=12% Similarity=0.175 Sum_probs=90.3
Q ss_pred eEEEecCCCCEEEEe--cC--CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CC--eEEE
Q 011257 237 NSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRL 309 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~--~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i 309 (490)
.+++|+|+++.|+.. .+ ..|++|++.+.. ... +..+........|+|++ +.|+..+. ++ .|.+
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~--------l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTR--------LTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYM 306 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEE--------CCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEE
Confidence 456789998877653 33 458888887432 222 23334444567899999 66665544 33 5777
Q ss_pred EeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CC---eEEEEeccCCCCceeeeeeeccc
Q 011257 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM---TLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~---~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
+|+.+++. ..+.... ..+..+.|+|+|++|+... ++ .|.+||+.. +. ...+.....
T Consensus 307 ~d~~~~~~-----~~l~~~~------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~- 366 (417)
T TIGR02800 307 MDADGGEV-----RRLTFRG------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLTDTGL- 366 (417)
T ss_pred EECCCCCE-----EEeecCC------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEccCCCC-
Confidence 88776542 2222111 3466789999999998764 32 788888874 32 333322111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecC
Q 011257 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCS 428 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~ 428 (490)
.....|+|||++|+..+.++ .+++.+..
T Consensus 367 ---------------~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 367 ---------------DESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ---------------CCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 11568999999988877654 35555544
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=7.6e-11 Score=113.18 Aligned_cols=168 Identities=10% Similarity=0.099 Sum_probs=102.0
Q ss_pred EEEecCCCCEEEEe--cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCC--eEEEE
Q 011257 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 310 (490)
Q Consensus 238 ~i~~~~~~~~l~~~--~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~iw 310 (490)
..+|+|||+.|+.. .++ .|++||+.+.. ... +..+........|+|++ +.++..+ .+| .|.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~--------lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSR--------VTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEE--------cccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEE
Confidence 46788988887753 343 67888887433 222 23344455678899999 6655544 343 57777
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--C--CeEEEEeccCCCCceeeeeeecccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d--~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
|+.+++.. .+.... .......|+|||++|+... + ..|.+||+.+ ++ ...+......
T Consensus 317 d~~~g~~~-----~lt~~~------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~~~~- 376 (430)
T PRK00178 317 NVNGGRAE-----RVTFVG------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDTSLD- 376 (430)
T ss_pred ECCCCCEE-----EeecCC------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCCCCC-
Confidence 87766521 111110 1234578999999998753 2 3588888875 43 3333211111
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecC---CeEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
....|+|||++|+..+.+ ..|.++++..+.. +.+..+.+.+...+|||-
T Consensus 377 ---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~--~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 377 ---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR--LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECCCCce--EECcCCCCCcCCCccCCC
Confidence 156899999998877653 3577777764332 345555566777788873
No 244
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=5.3e-12 Score=108.21 Aligned_cols=198 Identities=9% Similarity=0.137 Sum_probs=133.5
Q ss_pred cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
..+..++|++.-..++++ .|..|++||-...... .+ -......|++++|-|.+...|+.|+..| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt--~L------ks~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT--KL------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCc--ee------cchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 456789999976677777 8999999998742221 11 0123567999999998877888888776 889987
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeee-eeeccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATF-QVHEHLRPKL 389 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 389 (490)
...-....+++....+. .......+| .+|++++|.+||..+++++ +..|.|||.++ +..+... .+..+
T Consensus 170 s~tln~~r~~~~~s~~~--~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg----- 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHH--LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG----- 240 (445)
T ss_pred Ccccccccccccccccc--hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence 64322211111111111 001112334 6899999999999999974 58999999997 4443333 22221
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+.-+.||||+.+|+.++-|+..++|+........+-.. ..+.|...+|+|+|...+.+..
T Consensus 241 -----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 241 -----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred -----------eeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc
Confidence 34789999999999999999999996554332122222 3448999999999988776644
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4.3e-11 Score=108.66 Aligned_cols=290 Identities=12% Similarity=0.185 Sum_probs=172.2
Q ss_pred cEEEEEECCCCCEEEEec-----C-----CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccccee
Q 011257 37 IISAIEFDKSGDHLATGD-----R-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~-----~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (490)
.++++.|||-|.||.|=- . .-.+.+|+++++.....+....+. .+.+.|+++-.+...+.+++.-|..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~-~W~~qfs~dEsl~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN-GWVPQFSIDESLAARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc-CcccccccchhhhhhhhcceEEEEec
Confidence 789999999999997721 1 235789999985433233333333 36788888766555555544322222
Q ss_pred ee------eeeccceeEEEEeecCCCcEEEE-----EeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccC
Q 011257 107 KS------LEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (490)
Q Consensus 107 ~~------~~~~~~V~~v~~~p~~~~~~l~~-----~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
.. --+...|+...++|.+....+++ .+.-+.++||............ +-..+..+. -
T Consensus 154 ~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a----------~ksFFkadk--v 221 (566)
T KOG2315|consen 154 GSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA----------NKSFFKADK--V 221 (566)
T ss_pred CCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh----------hccccccce--e
Confidence 21 12346788999998644445555 2556689999876322111110 001111111 1
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE--e-c
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS--A-D 252 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-~ 252 (490)
.+.|.+-|..+.+.....-+..=.+=-...++.+.+ .++ ..+.-. -...++|.++.|+|+++-++. | .
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~----t~g---~s~~V~--L~k~GPVhdv~W~~s~~EF~VvyGfM 292 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA----TQG---ESVSVP--LLKEGPVHDVTWSPSGREFAVVYGFM 292 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEE----ecC---ceEEEe--cCCCCCceEEEECCCCCEEEEEEecc
Confidence 566777777521111000000000001123455544 111 011111 123489999999999988877 4 6
Q ss_pred CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccccceecccc
Q 011257 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 253 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
-..+.+||++ ....+.+ ..++=.++-|+|.| ++++.++- -|.|-+||+.+.+.+ ..+...
T Consensus 293 PAkvtifnlr-~~~v~df----------~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i----~~~~a~- 355 (566)
T KOG2315|consen 293 PAKVTIFNLR-GKPVFDF----------PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLI----AKFKAA- 355 (566)
T ss_pred cceEEEEcCC-CCEeEeC----------CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhc----cccccC-
Confidence 8899999998 5554432 35566789999999 88887776 488999999986543 344432
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-------CCeEEEEeccCCCCceeeee
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-------d~~i~iwd~~~~~~~~~~~~ 380 (490)
.-+-..|+|||++++++. |+.++||++. |..+....
T Consensus 356 -------------~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt--G~~l~~~~ 398 (566)
T KOG2315|consen 356 -------------NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT--GSLLHEKM 398 (566)
T ss_pred -------------CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec--Cceeehhh
Confidence 346688999999999862 5889999997 66665443
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2.2e-11 Score=118.30 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=138.6
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
.++..+.+..+-+||............+.+..+ ....-+.++++.-++++| --+.|.+|+....+...
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~------- 169 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI------- 169 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEE----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-------
Confidence 567778888888887322211111111111110 122233466777788888 78999999987333332
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCE
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 355 (490)
.+.+|.+.+..+.++-+| +++++.+.|.++|+|++.+.+.. . ...-+|+..+..++|+|+ .
T Consensus 170 -~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~----~-----------~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 170 -RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVL----G-----------CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred -eecccCCceEEEEEccCC-cEEEEEecCcceeeeeccccccc----C-----------cccccccceeEEEEeccc--e
Confidence 468999999999999999 99999999999999999997642 1 123567799999999998 6
Q ss_pred EEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 356 ILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 356 l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+++ |.|.+.++|+.. +..+..+.+|.... ++.++..++...++|++.|+.+++|++...
T Consensus 231 i~t~gedctcrvW~~~--~~~l~~y~~h~g~~--------------iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVN--GTQLEVYDEHSGKG--------------IWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEeccceEEEEEecc--cceehhhhhhhhcc--------------eeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 666 567999999876 67777888777542 679999999999999999999999998743
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=2.6e-10 Score=102.42 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=92.6
Q ss_pred CCCCceEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEE
Q 011257 280 DLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~ 357 (490)
...++|..++|.|.+ +.|++. -.+-.+.++|++.+ + ...+.. ..-..+.|+|.+++++
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N-l----~~~~Pe--------------~~rNT~~fsp~~r~il 331 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN-L----RFYFPE--------------QKRNTIFFSPHERYIL 331 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeecccccc-e----EEecCC--------------cccccccccCcccEEE
Confidence 457899999999998 555544 46888999999876 2 122222 2346678999999998
Q ss_pred EE--cC--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee------cCCeEEEEec
Q 011257 358 SR--DY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS------YSNLFRVFGC 427 (490)
Q Consensus 358 sg--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------~dg~i~vw~~ 427 (490)
.+ +. |.+.+||.......+..+.+.... -+.|+||++++.+.. .|+.|.|||+
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s-----------------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS-----------------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeecCCce-----------------EeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 74 22 999999997422233355544422 578999999987654 3788999999
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
...+. . ..+.+.|-|.++....++.
T Consensus 395 ~g~~~-f--------el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 395 YGAKV-F--------ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred cCchh-h--------hhhhccccCCcccceeecc
Confidence 85533 1 4555666666665555443
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.6e-09 Score=93.77 Aligned_cols=272 Identities=14% Similarity=0.108 Sum_probs=165.8
Q ss_pred cCeEEEEEccCC--eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCC---CCCcEEE
Q 011257 135 DKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG---GVSSLRL 209 (490)
Q Consensus 135 dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~---~~g~v~i 209 (490)
+.-|.+|++.+. ++....... ....|.-++|+|+.+ .|.++. ..|.|..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~--------------~~~nptyl~~~~~~~------------~LY~v~~~~~~ggvaa 68 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA--------------ELGNPTYLAVNPDQR------------HLYVVNEPGEEGGVAA 68 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc--------------ccCCCceEEECCCCC------------EEEEEEecCCcCcEEE
Confidence 567999998843 222211111 113344789999998 444442 3566777
Q ss_pred eeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCc---
Q 011257 210 PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV--- 284 (490)
Q Consensus 210 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--- 284 (490)
|. ....+.......... ..+ .+...+++++++++++++ ..|.|.++-++..+.....++ +..|.+.
T Consensus 69 y~-iD~~~G~Lt~ln~~~-~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-----~~~h~g~~p~ 139 (346)
T COG2706 69 YR-IDPDDGRLTFLNRQT-LPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-----VVKHTGSGPH 139 (346)
T ss_pred EE-EcCCCCeEEEeeccc-cCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-----eeecCCCCCC
Confidence 66 222212111111111 122 233789999999999998 589999999986554433321 1222222
Q ss_pred -------eEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEE
Q 011257 285 -------ITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (490)
Q Consensus 285 -------v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 356 (490)
+....+.|++ +++++..- --+|.+|++..+.+.......++. ...-+.|.|+|++++.
T Consensus 140 ~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~-------------G~GPRHi~FHpn~k~a 205 (346)
T COG2706 140 ERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP-------------GAGPRHIVFHPNGKYA 205 (346)
T ss_pred ccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCccccccccccCC-------------CCCcceEEEcCCCcEE
Confidence 7889999999 77776654 457999999987654222222211 1457899999999998
Q ss_pred EEEc--CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEEEEecCCC--c
Q 011257 357 LSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEG--S 431 (490)
Q Consensus 357 ~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~~~--~ 431 (490)
..-. +++|.+|..+.....+..++.+...... +..... .-++..++||++|.+... ...|.+|.+... +
T Consensus 206 Y~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d---F~g~~~---~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 206 YLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED---FTGTNW---AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred EEEeccCCEEEEEEEcCCCceEEEeeeeccCccc---cCCCCc---eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 8754 4999999998644556666555433211 111111 127889999999987653 457888888743 2
Q ss_pred eee-eEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 432 AES-TTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 432 ~~~-~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
..+ .....+...-+...|+|++.....+.-
T Consensus 280 L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 280 LELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 221 112233344788889998887665544
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=7.7e-11 Score=109.93 Aligned_cols=296 Identities=11% Similarity=0.166 Sum_probs=197.0
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
+.......|++|+....|+|.|+.||.+++-.+.+...-...+. ++-..+.....++.||.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--------laa~snLsmNQtLeGH~----------- 71 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--------LAAASNLSMNQTLEGHN----------- 71 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--------cccccccchhhhhccCc-----------
Confidence 45567889999999999999999999999999886543211111 11112334456789999
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+.|.-+.|+ .+...|-++..+|-|.+|-+-.+.....
T Consensus 72 -~sV~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW~EE---------------------------------------- 108 (1189)
T KOG2041|consen 72 -ASVMVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSWCEE---------------------------------------- 108 (1189)
T ss_pred -ceEEEEEec--cccccccccCCCceEEEEeeecccHHHH----------------------------------------
Confidence 889999998 3556788889999999998876642110
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
. .-+....-|.+++|+.+|..++.. .||.|.+=.+. +.+.+..
T Consensus 109 --------------------------M---------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgK 152 (1189)
T KOG2041|consen 109 --------------------------M---------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGK 152 (1189)
T ss_pred --------------------------H---------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecch
Confidence 0 001222567899999999999999 89999888877 4444321
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccce-eccccCCCccccccccccceEEEEE
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-FEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+. ......+.|++|. ..++.+-.+|.+.+||...+-...-.... ..+. ..+......|-.+.|
T Consensus 153 ------eLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t------g~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 153 ------ELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGT------GIFSNFPTKIAEIEW 217 (1189)
T ss_pred ------hcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeee------eeecCCCccccceee
Confidence 122 1224578899998 88888899999999997754211000000 0000 001111123445555
Q ss_pred C--------CCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC-
Q 011257 350 A--------RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS- 419 (490)
Q Consensus 350 s--------p~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d- 419 (490)
. ||...|+.+- .|.+.|-.-.++..|+..-.+-. +..+.|+++|.+||.++.+
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~-----------------~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMK-----------------IVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccE-----------------eecceecCCCcEEEEccCcc
Confidence 3 4777888874 48888776655344443222211 4589999999999998864
Q ss_pred --------CeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 420 --------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 420 --------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
+.|.+|..- |.. +.+++.....|++++|-..|...+++
T Consensus 281 da~~~~d~n~v~Fysp~-G~i-~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 281 DADEPTDSNKVHFYSPY-GHI-VGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cccCccccceEEEeccc-hhh-eEEEecCCceeeeeEEcCCceEEEEE
Confidence 367777755 444 68899999999999998877655544
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.8e-10 Score=107.04 Aligned_cols=178 Identities=10% Similarity=0.055 Sum_probs=105.0
Q ss_pred cceeEEEecCCCCEEEEe-c-CC----cEEEEEcCCC--CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CC
Q 011257 234 YHINSISNNSDGETFISA-D-DL----RINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK 304 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~-d~----~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d 304 (490)
......+|+|||+.|+.. + +| .+..|++... +...++. ..........+|+||| +.|+..+ .+
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-------~~~~~~~~~p~wSPDG-~~Laf~s~~~ 302 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-------NEAFGTQGNPSFSPDG-TRLVFVSNKD 302 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-------cCCCCCcCCeEECCCC-CEEEEEECCC
Confidence 334567899999998875 2 23 3344666532 2222221 1122334578999999 6666554 56
Q ss_pred CeEEEEe--CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--C--CeEEEEeccCCCCceee
Q 011257 305 GSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVAT 378 (490)
Q Consensus 305 g~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d--~~i~iwd~~~~~~~~~~ 378 (490)
|...+|. +...... ...+.... ..+....|||||++|+... + ..|.+||+.. ++. ..
T Consensus 303 g~~~ly~~~~~~~g~~---~~~lt~~~------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-~~ 365 (428)
T PRK01029 303 GRPRIYIMQIDPEGQS---PRLLTKKY------------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-YQ 365 (428)
T ss_pred CCceEEEEECcccccc---eEEeccCC------------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-EE
Confidence 6555554 4321100 12222211 3567789999999998642 2 5799999985 443 33
Q ss_pred eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec---CCeEEEEecCCCceeeeEeccCCCceEEEEEccCC
Q 011257 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
+...... +....|+|||+.|+..+. ...|+++++.+++. ..+....+.+...+|+|-.
T Consensus 366 Lt~~~~~---------------~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 366 LTTSPEN---------------KESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ccCCCCC---------------ccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecCCC
Confidence 3222111 227899999998875443 35789999988765 3333345567788898743
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=1.6e-10 Score=110.90 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=119.5
Q ss_pred cceeEEEecCCCCEEEEe-c---CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCC--e
Q 011257 234 YHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG--S 306 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg--~ 306 (490)
..+.+.+|+|+|+.|+.+ . ...|++||+.++... . +..+...+.+++|+|++ +.|+ +.+.++ .
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~--------~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-K--------VASFPGMNGAPAFSPDG-SKLAVSLSKDGNPD 259 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-E--------eecCCCCccceEECCCC-CEEEEEECCCCCcc
Confidence 456677899999999886 3 257999999854322 1 12234456678999999 5554 555544 5
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC----CeEEEEeccCCCCceeeeeee
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d----~~i~iwd~~~~~~~~~~~~~~ 382 (490)
|++||+.++.. ..+..+. .......|+|||+.|+..++ ..|.++|+.. ++ ...+..+
T Consensus 260 i~~~d~~~~~~-----~~l~~~~------------~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~ 320 (417)
T TIGR02800 260 IYVMDLDGKQL-----TRLTNGP------------GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFR 320 (417)
T ss_pred EEEEECCCCCE-----EECCCCC------------CCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecC
Confidence 88899887642 2222221 23446789999999886532 3677777764 33 3333322
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
... +..+.|+|+|++|+.++.++ .|.+||+.++.. ..+... .......|+||+......
T Consensus 321 ~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 321 GGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAPNGRMILYA 382 (417)
T ss_pred CCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCC-CCCCCceECCCCCEEEEE
Confidence 221 23789999999999888775 799999988654 233322 234556899999988776
Q ss_pred ccCcc
Q 011257 460 SLSGV 464 (490)
Q Consensus 460 ~~~~~ 464 (490)
+...+
T Consensus 383 ~~~~~ 387 (417)
T TIGR02800 383 TTRGG 387 (417)
T ss_pred EeCCC
Confidence 65443
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=9.3e-10 Score=104.42 Aligned_cols=202 Identities=14% Similarity=0.123 Sum_probs=114.2
Q ss_pred cceeEEEEeecCCCcEE-EEEeCcC--eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 113 EKINKIRWCQSANSALY-LLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l-~~~~~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..+..-+|+|+.....+ ++...+| .|.+.++.+++...+....... ...+|+|||+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~----------------~~p~wSPDG~~---- 244 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ----------------LMPTFSPRKKL---- 244 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc----------------cceEECCCCCE----
Confidence 34566799984432223 2444443 5777788888766655443221 15689999984
Q ss_pred cccCCCCccccCCCCC--cE--EEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEE--c
Q 011257 190 FGCASNDSSFPPGGVS--SL--RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN--L 261 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g--~v--~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd--~ 261 (490)
++++...+| .+ ..|++ . ........+.. ..+.......+|+|||+.|+.. .++...+|. +
T Consensus 245 -------Laf~s~~~g~~di~~~~~~~-~---~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 245 -------LAFISDRYGNPDLFIQSFSL-E---TGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred -------EEEEECCCCCcceeEEEeec-c---cCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 223333333 22 22441 1 11111111221 2222334567999999988875 466555554 4
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCccccccccceeccccCCCcccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (490)
...+.... .+..+...+....|+||| +.|+..+.+ ..|.+||+.+++. ..+....
T Consensus 313 ~~~g~~~~-------~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~--------- 370 (428)
T PRK01029 313 DPEGQSPR-------LLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSP--------- 370 (428)
T ss_pred cccccceE-------EeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCC---------
Confidence 32221111 123334566788999999 777665543 4699999988763 2222211
Q ss_pred ccccceEEEEECCCCCEEEE-Ec---CCeEEEEeccC
Q 011257 339 EIIASISDIKFARNGRHILS-RD---YMTLKLWDINM 371 (490)
Q Consensus 339 ~h~~~i~~l~~sp~g~~l~s-g~---d~~i~iwd~~~ 371 (490)
..+....|+|||++|+. +. ...|.++|+..
T Consensus 371 ---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 371 ---ENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred ---CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 24567899999998875 32 26788888874
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.5e-10 Score=98.75 Aligned_cols=238 Identities=12% Similarity=0.126 Sum_probs=152.6
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEE-ecCCCCCCCcccccccccceeecCCccccccccccCC--ccc------
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE-RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE--PEF------ 103 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~--~~~------ 103 (490)
+|.+.|+....-|-..-+.+.+.|.+++||- ++.++.-+...+........+.+.++.+.+....... .+|
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 6788899988888777899999999999996 4455555555555666666777776654433221110 010
Q ss_pred ---ceeee-eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEE
Q 011257 104 ---DYLKS-LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (490)
Q Consensus 104 ---~~~~~-~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (490)
..++. +.|...|..+-|+- ..+.+++.+.|..+.---.+.+....-..+... .. .+.+
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~--~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--------------~t--~~~~ 163 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSL--THEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--------------AS--ALQF 163 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecC--CceeEEEeccccceEEEeeccCCcccceEeecc--------------CC--CCce
Confidence 00111 13557888888874 345888888888776444444332211111100 00 0111
Q ss_pred eccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEE
Q 011257 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL 258 (490)
Q Consensus 180 s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~ 258 (490)
.- .+.+.|...|.+.+-.+.. ... ... ..+.+|...+.+++|.+....|.+| .|..+.+
T Consensus 164 d~--------------~~~fvGd~~gqvt~lr~~~-~~~----~~i-~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~ 223 (404)
T KOG1409|consen 164 DA--------------LYAFVGDHSGQITMLKLEQ-NGC----QLI-TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM 223 (404)
T ss_pred ee--------------EEEEecccccceEEEEEee-cCC----ceE-EEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence 00 0345566666666644111 111 111 2238999999999999999999999 8999999
Q ss_pred EEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc
Q 011257 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (490)
||+...... .. .+.+|...|..+...+.- +.+.+++.||.|.+||++...
T Consensus 224 wdigg~~g~-~~------el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 224 WDIGGRKGT-AY------ELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EeccCCcce-ee------eeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 999733322 21 468899999999888877 899999999999999998643
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=8.8e-10 Score=92.25 Aligned_cols=251 Identities=18% Similarity=0.177 Sum_probs=153.6
Q ss_pred cceeEEEEeecC-CCc-EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 113 EKINKIRWCQSA-NSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 113 ~~V~~v~~~p~~-~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..+..+.|+-.+ ++. .++-+-.+|.|.++..........++.-... .+ ......++.|++.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~-------ki--~~~~~lslD~~~~~~------ 134 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK-------KI--SVVEALSLDISTSGT------ 134 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh-------hh--hheeeeEEEeeccCc------
Confidence 457778887532 233 4556778899999987654333322211000 00 000123677888887
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
.++++..+|.+.+-+ ..+. ..+..+ ..+.|..+.+...|+.. .+++.+| +|+.+..||++..+..+
T Consensus 135 ------~i~vs~s~G~~~~v~---~t~~--~le~vq-~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 135 ------KIFVSDSRGSISGVY---ETEM--VLEKVQ-TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred ------eEEEEcCCCcEEEEe---ccee--eeeecc-cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 678888888888533 1111 111111 24789899998888764 4677888 99999999999554332
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
-. ...-|...|.++.-+|..+.+++||+.|-.|++||.|+-.. ++. +... .+.|+.+.
T Consensus 203 ~~------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~--~~~v-----------~GGVWRi~ 260 (339)
T KOG0280|consen 203 WH------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLF--KAKV-----------GGGVWRIK 260 (339)
T ss_pred ee------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccc--cCcc-----------ccceEEEE
Confidence 11 24568899999999987778999999999999999995321 112 1111 17899999
Q ss_pred ECCC--CCEEEEEcCCeEEEEeccCCC-C---ceeeeeeeccccccccccccCCCccceeeEEEcCC----CCEEEEee-
Q 011257 349 FARN--GRHILSRDYMTLKLWDINMDS-G---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD----GGRVATGS- 417 (490)
Q Consensus 349 ~sp~--g~~l~sg~d~~i~iwd~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~~- 417 (490)
++|. ++.|+++-.+-.+|-+..... + .+...+.|. ++++..| ..+|||++
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd-------------------Sl~YG~DWd~~~~~lATCsF 321 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD-------------------SLCYGGDWDSKDSFLATCSF 321 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc-------------------ceeeccccccccceeeeeec
Confidence 9994 344555544556666665421 1 122233333 3444333 35688766
Q ss_pred cCCeEE-EEecCCCc
Q 011257 418 YSNLFR-VFGCSEGS 431 (490)
Q Consensus 418 ~dg~i~-vw~~~~~~ 431 (490)
.|+.++ +|-.-++.
T Consensus 322 YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 322 YDKKIRQLWLHITGE 336 (339)
T ss_pred cccceeeeeeeccCC
Confidence 577755 77666554
No 255
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.5e-11 Score=107.20 Aligned_cols=291 Identities=11% Similarity=0.118 Sum_probs=185.2
Q ss_pred ccccccccccccccccccccccccEEEEEECC--CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~--dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (490)
.+.|+-... ....--..+|...|....|-| +.+-+++.+.||.|++=.+...... .
T Consensus 166 vv~WdW~~~--~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~--------------------e 223 (559)
T KOG1334|consen 166 VVVWDWVSG--SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV--------------------E 223 (559)
T ss_pred EEeehhhcc--CcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce--------------------e
Confidence 344554431 222333567999999999988 4457999999999998876543321 0
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
-...+..|. ++|+.++.-|.. ...|++++.|+.+.-.|++.+..........
T Consensus 224 ~t~rl~~h~------------g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~--------------- 275 (559)
T KOG1334|consen 224 NTKRLAPHE------------GPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE--------------- 275 (559)
T ss_pred cceeccccc------------CccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeec---------------
Confidence 012244555 889999998854 3579999999999999988765332111000
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEE
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFIS 250 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~ 250 (490)
.+.. ..-...+++.+|... .+++
T Consensus 276 -------------------------------~~~~-------------------------~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 276 -------------------------------ADEK-------------------------ERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred -------------------------------cCCc-------------------------cceeeeeEecCCCCcccccc
Confidence 0000 001235677777644 6677
Q ss_pred e-cCCcEEEEEcCCCCcee--e-eeecCCCcc-CCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 251 A-DDLRINLWNLEISNQSF--N-IVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 251 ~-~d~~i~~wd~~~~~~~~--~-~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
+ .|..+++||.+.-...- . +-...|..+ ......|++++|+.++ .-++++..|-.|+++.-..+... . ....
T Consensus 300 gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~-~-p~~~ 376 (559)
T KOG1334|consen 300 GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGS-E-PDPS 376 (559)
T ss_pred CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCC-C-CCCC
Confidence 6 88899999887432220 0 000111111 1234568999999887 56666778888999854332210 0 0000
Q ss_pred ccccCCCcccccccccc--ceEEEE-ECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccce
Q 011257 326 EEQEAPGTRSFFTEIIA--SISDIK-FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~--~i~~l~-~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
.. ..+-...++++|.+ .|..+- |-|...|+++|+| |.|.||+-.+ ++.+..+.+.... |
T Consensus 377 s~-~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t-~eii~~MegDr~V---------------V 439 (559)
T KOG1334|consen 377 SP-REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHV---------------V 439 (559)
T ss_pred cc-hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch-hHHHHHhhcccce---------------E
Confidence 00 00111233556654 355555 4678899999999 9999999997 8888888887765 4
Q ss_pred eeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 402 FECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
.|+.=+|--.+||+.+-|..|+||-..+.
T Consensus 440 NCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 440 NCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred eccCCCCCCchhhccCCccceeeecCCcc
Confidence 58888998899999999999999988544
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.1e-09 Score=97.71 Aligned_cols=326 Identities=12% Similarity=0.115 Sum_probs=190.9
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEE
Q 011257 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (490)
Q Consensus 39 ~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v 118 (490)
+-+.|||-|.||+|--..| |.+|--.+-. .+..| .| ..|.-+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-----------------------r~~RF-~H-------------p~Vq~i 255 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD-----------------------RIQRF-YH-------------PGVQFI 255 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHH-----------------------HHHhc-cC-------------CCceee
Confidence 5688999999999976664 7788744322 11212 23 237778
Q ss_pred EEeecCCCcEEEEEeC-----------cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 119 RWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 119 ~~~p~~~~~~l~~~~~-----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
.|+| +..+|++-+. ...++|||+.+|..+..+...... .....-+.||.|++
T Consensus 256 dfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~------------~~~WP~frWS~DdK--- 318 (698)
T KOG2314|consen 256 DFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP------------YLKWPIFRWSHDDK--- 318 (698)
T ss_pred ecCC--ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC------------ccccceEEeccCCc---
Confidence 8887 4458887432 257999999999887765542110 01112568899998
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--c----CCcEEEEEc
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D----DLRINLWNL 261 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~----d~~i~~wd~ 261 (490)
+++.-.. .+|.||+ ... -.....+. -.-..|....|+|.+++||.= . -..+.+..+
T Consensus 319 ---------y~Arm~~-~sisIyE-tps-f~lld~Ks------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ev 380 (698)
T KOG2314|consen 319 ---------YFARMTG-NSISIYE-TPS-FMLLDKKS------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEV 380 (698)
T ss_pred ---------eeEEecc-ceEEEEe-cCc-eeeecccc------cCCccccCcccCCCcceEEEEcccccCCcceEEEEec
Confidence 5553333 6677776 111 11111111 112567888999999888862 1 223445555
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccccceeccccCC
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.+. +.++.. .-+.-.-..+.|-.+| .+|+.-- .=..+-|+.++.... ++..++..
T Consensus 381 Ps~-~~iRt~-------nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---pve~velk--- 445 (698)
T KOG2314|consen 381 PSK-REIRTK-------NLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---PVEVVELK--- 445 (698)
T ss_pred Ccc-ceeeec-------cceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCC---Cceeeecc---
Confidence 422 222211 1122222345566666 5554321 112345555555432 23333332
Q ss_pred CccccccccccceEEEEECCCCCEEEE--EcC--CeEEEEeccCCCC---ceeeeeeeccccccccccccCCCccceeeE
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILS--RDY--MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~s--g~d--~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
..|...+|-|.|..+++ |.+ .++.+|.+.+... .+..+.... ...+
T Consensus 446 ----------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-----------------~N~v 498 (698)
T KOG2314|consen 446 ----------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-----------------ANTV 498 (698)
T ss_pred ----------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-----------------cceE
Confidence 57899999999988775 543 8899999873122 222232211 1378
Q ss_pred EEcCCCCEEEEee---cCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceecCeeeccccceeeee
Q 011257 405 CLSGDGGRVATGS---YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRGMFTHIQLLCIFIQ 481 (490)
Q Consensus 405 ~~s~d~~~l~s~~---~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (490)
.|+|.|++++.+. ..|.+.++|..-..........| ...+.+.|.|.|..+..++.. -+....+|...|-|-.
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~---wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS---WRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh---hhhccccceEEEEeec
Confidence 9999999988765 46889999998533322223334 357889999999988766432 1344567777777665
Q ss_pred ee
Q 011257 482 AL 483 (490)
Q Consensus 482 ~~ 483 (490)
.|
T Consensus 575 rl 576 (698)
T KOG2314|consen 575 RL 576 (698)
T ss_pred HH
Confidence 54
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=3.6e-08 Score=88.25 Aligned_cols=144 Identities=10% Similarity=0.067 Sum_probs=104.8
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE
Q 011257 280 DLTEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s 358 (490)
++...|.-..+.-+. .-++.|..|| .+-+||.++++. +.+...- +.|.++..+|+|++++.
T Consensus 357 ~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~-----kr~e~~l------------g~I~av~vs~dGK~~vv 418 (668)
T COG4946 357 GKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV-----KRIEKDL------------GNIEAVKVSPDGKKVVV 418 (668)
T ss_pred CCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-----EEeeCCc------------cceEEEEEcCCCcEEEE
Confidence 344556666666666 5788889998 899999998863 3444332 67999999999999999
Q ss_pred EcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC----eEEEEecCCCcee
Q 011257 359 RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAE 433 (490)
Q Consensus 359 g~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg----~i~vw~~~~~~~~ 433 (490)
+.| ..|-+.|+++ +.....-+...+. |+.+.|||+++++|-+--+| .|+++|+.+++.
T Consensus 419 aNdr~el~vididn-gnv~~idkS~~~l---------------Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki- 481 (668)
T COG4946 419 ANDRFELWVIDIDN-GNVRLIDKSEYGL---------------ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI- 481 (668)
T ss_pred EcCceEEEEEEecC-CCeeEecccccce---------------eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE-
Confidence 987 8899999986 5433333333333 56999999999999887765 699999998865
Q ss_pred eeEeccCCCceEEEEEccCCCCCCCC
Q 011257 434 STTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 434 ~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
.........-.+-+|.||++..-.-
T Consensus 482 -y~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 -YDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred -EEecCCcccccCcccCCCCcEEEEE
Confidence 3333334445667888888765443
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=4.4e-10 Score=102.96 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=114.8
Q ss_pred CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccc
Q 011257 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (490)
Q Consensus 244 ~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (490)
+...++-| ..|.|.+|++..++-...+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+...... +
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----I 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee----e
Confidence 44456668 8999999999844433332 346799999999999887 8999999999999999988764 3
Q ss_pred ceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCcccee
Q 011257 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (490)
+.+.... ..+.+++.+|||..+++++ ++|++||+.+ ++.+.++.+|...+ .
T Consensus 138 ~~~~~~~------------~~~~sl~is~D~~~l~~as-~~ik~~~~~~-kevv~~ftgh~s~v---------------~ 188 (541)
T KOG4547|consen 138 RIWKEQK------------PLVSSLCISPDGKILLTAS-RQIKVLDIET-KEVVITFTGHGSPV---------------R 188 (541)
T ss_pred eeeccCC------------CccceEEEcCCCCEEEecc-ceEEEEEccC-ceEEEEecCCCcce---------------E
Confidence 5555443 5689999999999999988 5999999998 99999999999874 4
Q ss_pred eEEEcCC-----CCEEEE-eecCCeEEEEecCC
Q 011257 403 ECCLSGD-----GGRVAT-GSYSNLFRVFGCSE 429 (490)
Q Consensus 403 ~~~~s~d-----~~~l~s-~~~dg~i~vw~~~~ 429 (490)
+++|..+ |.++.+ ...+..+.+|-+..
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7777766 666554 44566788887764
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=5.2e-10 Score=107.02 Aligned_cols=186 Identities=12% Similarity=0.141 Sum_probs=114.1
Q ss_pred ccccceeEEEecCCCCEEEEe--cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCC
Q 011257 231 AHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG 305 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~--~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg 305 (490)
.+...+.+..|+|||+.|+.. .++ .|++||+.++.. ..+. .+ .......+|+||| +.|+ +.+.+|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt-----~~---~g~~~~~~wSPDG-~~La~~~~~~g 284 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVT-----SF---PGINGAPRFSPDG-KKLALVLSKDG 284 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEec-----CC---CCCcCCeeECCCC-CEEEEEEeCCC
Confidence 334567789999999998875 333 588888874432 2211 12 2233468999999 5554 556666
Q ss_pred e--EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC--C--eEEEEeccCCCCceeee
Q 011257 306 S--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATF 379 (490)
Q Consensus 306 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d--~--~i~iwd~~~~~~~~~~~ 379 (490)
. |+++|+.+++. ..+..+. ......+|+|||++|+..++ + .|.++|+.. ++ ...+
T Consensus 285 ~~~Iy~~dl~tg~~-----~~lt~~~------------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~L 345 (448)
T PRK04792 285 QPEIYVVDIATKAL-----TRITRHR------------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRL 345 (448)
T ss_pred CeEEEEEECCCCCe-----EECccCC------------CCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEE
Confidence 5 77788877653 2222221 34567899999999886532 3 466666654 33 3333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CC--eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
...... ....+|+|||++|+..+. ++ .|.++|+.+++. ..+... .......|+|||...
T Consensus 346 t~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~-~~d~~ps~spdG~~I 407 (448)
T PRK04792 346 TFEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTST-RLDESPSVAPNGTMV 407 (448)
T ss_pred ecCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCC-CCCCCceECCCCCEE
Confidence 211111 125789999999887665 34 466678887764 233322 123345899999988
Q ss_pred CCCccCc
Q 011257 457 PLGSLSG 463 (490)
Q Consensus 457 ~~~~~~~ 463 (490)
..++...
T Consensus 408 ~~~~~~~ 414 (448)
T PRK04792 408 IYSTTYQ 414 (448)
T ss_pred EEEEecC
Confidence 7766543
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=9.5e-10 Score=105.65 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=118.0
Q ss_pred ccccceeEEEecCCCCEEEEe--cC--CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCC
Q 011257 231 AHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG 305 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~--~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg 305 (490)
.+...+...+|+|||+.|+.. .+ ..|.+|++.++. ...+ ....+.+....|+|+| +.|+ +...+|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l--------~~~~g~~~~~~~SpDG-~~la~~~~~~g 265 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQI--------TNFEGLNGAPAWSPDG-SKLAFVLSKDG 265 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEc--------cCCCCCcCCeEECCCC-CEEEEEEccCC
Confidence 445677889999999998775 33 368889997443 2221 2223334568999999 6655 555555
Q ss_pred --eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC----CeEEEEeccCCCCceeee
Q 011257 306 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATF 379 (490)
Q Consensus 306 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d----~~i~iwd~~~~~~~~~~~ 379 (490)
.|++||+.+++. ..+..+. .......|+|||+.|+..++ ..|.++|+.. ++ ...+
T Consensus 266 ~~~Iy~~d~~~~~~-----~~lt~~~------------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~l 326 (430)
T PRK00178 266 NPEIYVMDLASRQL-----SRVTNHP------------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERV 326 (430)
T ss_pred CceEEEEECCCCCe-----EEcccCC------------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEe
Confidence 688889987653 2222221 33456789999998876543 3577777764 43 3333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC-C--eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
...... .....|+|||++|+..+.+ + .|.+||+.+++.. .+.. ........|+|||...
T Consensus 327 t~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~~~~~p~~spdg~~i 388 (430)
T PRK00178 327 TFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TSLDESPSVAPNGTML 388 (430)
T ss_pred ecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CCCCCCceECCCCCEE
Confidence 211111 1257899999999877643 3 5889999988653 3322 2223356899999988
Q ss_pred CCCccCc
Q 011257 457 PLGSLSG 463 (490)
Q Consensus 457 ~~~~~~~ 463 (490)
..++...
T Consensus 389 ~~~~~~~ 395 (430)
T PRK00178 389 IYATRQQ 395 (430)
T ss_pred EEEEecC
Confidence 8776543
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=3.2e-09 Score=90.89 Aligned_cols=305 Identities=10% Similarity=0.069 Sum_probs=162.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe---EEEEeeeccCC-CcCCCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHP-EKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
+-|.+|.|. ..|++|++|..+|.|-++.-.... .......+.+. +..+... .....-.+.+.|.+++..
T Consensus 26 diis~vef~--~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkS--leieEKinkIrw~~~~n~--- 98 (433)
T KOG1354|consen 26 DIISAVEFD--HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKS--LEIEEKINKIRWLDDGNL--- 98 (433)
T ss_pred cceeeEEee--cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhh--hhhhhhhhhceecCCCCc---
Confidence 558889997 478899999999999999644321 11111111111 1111000 000111236677777663
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
..++..+.|.+|++|.+... .....+.... ..+....+.++.. -+.+ .+-.+... +
T Consensus 99 -------a~FLlstNdktiKlWKi~er-~~k~~~~~~~--~~~~~~~~~~lr~------p~~~~~~~~vea~-------p 155 (433)
T KOG1354|consen 99 -------AEFLLSTNDKTIKLWKIRER-GSKKEGYNLP--EEGPPGTITSLRL------PVEGRHDLEVEAS-------P 155 (433)
T ss_pred -------cEEEEecCCcceeeeeeecc-cccccccccc--ccCCCCccceeec------eeeccccceeeee-------e
Confidence 26778899999999984222 2211111000 0111122222221 1111 11111110 1
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
.++ .-..|.-.|.++.++.|. ..+++ ..|=+|.+|++.-...... +-.++.+. +.....-|++.
T Consensus 156 rRv------~aNaHtyhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~sFn-IVDIKP~n-------mEeLteVITsa 219 (433)
T KOG1354|consen 156 RRV------YANAHTYHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQSFN-IVDIKPAN-------MEELTEVITSA 219 (433)
T ss_pred eee------ccccceeEeeeeeecCcc-ceEee-ccceeeeeccccccCCcee-EEEccccC-------HHHHHHHHhhh
Confidence 111 135688889999999998 66665 4677899999875432211 01111111 12223568999
Q ss_pred EECCCC-CEEEEE-cCCeEEEEeccCCCCce-eeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 348 KFARNG-RHILSR-DYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 348 ~~sp~g-~~l~sg-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
.|+|.. ..++.+ +.|+|++.|++. ..+. ..-+.......+...-+-+..+..|.++.|+++|+|+++-.. -+|++
T Consensus 220 EFhp~~cn~f~YSSSKGtIrLcDmR~-~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~ 297 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKGTIRLCDMRQ-SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL 297 (433)
T ss_pred ccCHhHccEEEEecCCCcEEEeechh-hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence 999943 444444 569999999984 2211 110000000000111111222334669999999999997654 68999
Q ss_pred EecCCCceeeeEeccCC------------Cce---EEEEEccCCCCCCCCccCcce
Q 011257 425 FGCSEGSAESTTLEASK------------NPM---RRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~------------~~v---~~~~~sp~~~~~~~~~~~~~~ 465 (490)
||+.-....+.+...|. +.| ..++|+.++.....|+....+
T Consensus 298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 99964433356665553 222 357899988888777765443
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=4.7e-07 Score=81.95 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=137.3
Q ss_pred EeecCCCcEEEEE-e---------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 120 WCQSANSALYLLS-T---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 120 ~~p~~~~~~l~~~-~---------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
++| +++.++++ + .+..|.+||..+.+..........+... .-..+..++++|||+
T Consensus 53 ~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--------~~~~~~~~~ls~dgk----- 117 (352)
T TIGR02658 53 VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--------VGTYPWMTSLTPDNK----- 117 (352)
T ss_pred ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--------ccCccceEEECCCCC-----
Confidence 665 55566655 4 5889999999999887766654321100 112223678999999
Q ss_pred cccCCCCccccCC--CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCce
Q 011257 190 FGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (490)
Q Consensus 190 ~~~~~~~~l~~~~--~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~ 267 (490)
++++.. .+..|.+.|+..+ .. ...... ... ..+--..+...++.|.||......+...++.
T Consensus 118 -------~l~V~n~~p~~~V~VvD~~~~-kv------v~ei~v--p~~-~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 118 -------TLLFYQFSPSPAVGVVDLEGK-AF------VRMMDV--PDC-YHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred -------EEEEecCCCCCEEEEEECCCC-cE------EEEEeC--CCC-cEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 555443 3788999882211 11 111100 010 1111112222223333343333333322221
Q ss_pred eeeeecCCCccCC-----CCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCcccccc-ccceeccccCCCcccccccc
Q 011257 268 FNIVDVKPANMED-----LTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 268 ~~~~~~~~~~~~~-----~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h 340 (490)
. ....+ .+.. ...+ .|.+ ++ ..+..... |+|.+.|+........ ....+.....+ . .-.
T Consensus 181 ~-~~~~~--vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~---~--~wr 246 (352)
T TIGR02658 181 K-IKPTE--VFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKA---D--GWR 246 (352)
T ss_pred E-Eeeee--eecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccc---c--ccC
Confidence 1 00000 0000 0111 4466 66 55555444 9999999765432211 01111111000 0 001
Q ss_pred ccceEEEEECCCCCEEEEEc---------C--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 341 IASISDIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 341 ~~~i~~l~~sp~g~~l~sg~---------d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
.....-++++|+++.++... + +.|.++|..+ .+.+..+..... ++.++++||
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~D 309 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQD 309 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCC
Confidence 13444599999998887631 1 5899999997 888877765433 348999999
Q ss_pred CC-EEEEee-cCCeEEEEecCCCceeeeEe
Q 011257 410 GG-RVATGS-YSNLFRVFGCSEGSAESTTL 437 (490)
Q Consensus 410 ~~-~l~s~~-~dg~i~vw~~~~~~~~~~~~ 437 (490)
++ +|++.. .++.|.++|..+++. +..+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~-i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKE-LSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeE-Eeee
Confidence 99 777666 578899999999977 4555
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.2e-08 Score=93.83 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=105.3
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeee-ccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
+++.|...|.|-+|++..+ + ....+ ...|.+.|.++.++.+-..|.++ .|+.+..|+.. ..+.++.+
T Consensus 72 ~lvlgt~~g~v~~ys~~~g-~------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~--- 140 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGG-E------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIW--- 140 (541)
T ss_pred EEEeecCCccEEEEEecCC-e------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeee---
Confidence 5666667777777662111 1 11111 26788999999999998899998 89999999998 55555543
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC--
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-- 352 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-- 352 (490)
.+....+.+++.+||+ ..+++++ +.|++||+.+++. +.+|++|. ++|++++|-.+
T Consensus 141 ----~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~kev----v~~ftgh~------------s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 141 ----KEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKEV----VITFTGHG------------SPVRTLSFTTLID 197 (541)
T ss_pred ----ccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCceE----EEEecCCC------------cceEEEEEEEecc
Confidence 4556778899999998 8888865 5799999999886 36666665 89999999876
Q ss_pred ---CCEEEEEc--CCeEEEEeccC
Q 011257 353 ---GRHILSRD--YMTLKLWDINM 371 (490)
Q Consensus 353 ---g~~l~sg~--d~~i~iwd~~~ 371 (490)
|.+++++. +.-+.+|-+..
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccceeeeccccccceeEEEEEc
Confidence 88888864 36778887764
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.9e-08 Score=90.47 Aligned_cols=315 Identities=13% Similarity=0.181 Sum_probs=169.7
Q ss_pred cccccccEEEEEECCCCCEEEEecC-----------CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccC
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h 99 (490)
.+.|. .|.-+.|||..+||+|=+. ...++|||+.++... ..|..-
T Consensus 246 RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-----------------------rsF~~~ 301 (698)
T KOG2314|consen 246 RFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-----------------------RSFPVI 301 (698)
T ss_pred hccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-----------------------cceecc
Confidence 34464 5889999999999999652 247999999998743 222110
Q ss_pred CcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEE
Q 011257 100 EPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (490)
Q Consensus 100 ~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (490)
... . ..-.-.+|+ .|+.++|--.. ..|.||+.....+........ .......|
T Consensus 302 ~~~-------~--~~WP~frWS--~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki---------------~gIr~Fsw 354 (698)
T KOG2314|consen 302 KSP-------Y--LKWPIFRWS--HDDKYFARMTG-NSISIYETPSFMLLDKKSLKI---------------SGIRDFSW 354 (698)
T ss_pred CCC-------c--cccceEEec--cCCceeEEecc-ceEEEEecCceeeecccccCC---------------ccccCccc
Confidence 000 0 111236787 46677776555 578888876533322211111 11125677
Q ss_pred eccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c---C--
Q 011257 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---D-- 253 (490)
Q Consensus 180 s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d-- 253 (490)
+|.+.. +++...+.-... ..+.+-. . ...+.+++- .-+.-.=..+-|..+|.+|+.- + .
T Consensus 355 sP~~~l----lAYwtpe~~~~p---arvtL~e------v-Ps~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 355 SPTSNL----LAYWTPETNNIP---ARVTLME------V-PSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred CCCcce----EEEEcccccCCc---ceEEEEe------c-Cccceeeec-cceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 777662 111100000000 1122211 0 011111110 1111111235577788888762 1 1
Q ss_pred -----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCcccccccccee
Q 011257 254 -----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 254 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
..+.++.++...-....+ .....|..++|.|.| +.|++-+. ..++.+|.+.+.....+.++.+
T Consensus 420 ~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred ccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 124455555333333322 236778999999999 66554443 3578889888533222333444
Q ss_pred ccccCCCccccccccccceEEEEECCCCCEEEEE---c-CCeEEEEeccCCCCceee-eeeeccccccccccccCCCccc
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---D-YMTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFD 400 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg---~-d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
+. ...+.+.|+|.|++++.+ + .|.+.++|+.. .....+ ...|...
T Consensus 491 dk--------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~a--------------- 540 (698)
T KOG2314|consen 491 DK--------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFAA--------------- 540 (698)
T ss_pred cc--------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCcccccc---------------
Confidence 43 246789999999999875 3 39999999984 222221 1122222
Q ss_pred eeeEEEcCCCCEEEEeec------CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCC
Q 011257 401 KFECCLSGDGGRVATGSY------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 455 (490)
+.+.|.|.|+|+++++. |..-++|+.+.... ... .-+.-....|.|.-+.
T Consensus 541 -t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll-~~~---~i~~f~qF~WRPRPps 596 (698)
T KOG2314|consen 541 -TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL-KED---IIDRFKQFLWRPRPPS 596 (698)
T ss_pred -ccceECCCCCEEEEeeehhhhccccceEEEEeecHHH-HHH---HHHHHHhhccCCCCCc
Confidence 37899999999999885 45567777763321 111 1133445677774443
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=5.5e-10 Score=114.43 Aligned_cols=232 Identities=15% Similarity=0.178 Sum_probs=150.0
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.-..+-..|.++.=+|...+.+||+.||.|++|....++.+ ..+..-.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g--------- 2250 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAG--------- 2250 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccC---------
Confidence 34456678999999999999999999999999999877643 2221111
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
. .+|+.++|+ .+|+.+..+..||.+.+|............+... ...+.|-..
T Consensus 2251 -~-s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~----------------~~Df~Fi~s------- 2303 (2439)
T KOG1064|consen 2251 -N-SRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKA----------------LSDFRFIGS------- 2303 (2439)
T ss_pred -c-chhhhhhhc--ccCCceeeeccCCceeecccCCcceeccccCCcc----------------ccceeeeeh-------
Confidence 1 668999998 4778999999999999999873222111111100 002222221
Q ss_pred cccCCCCccccC---CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 190 FGCASNDSSFPP---GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 190 ~~~~~~~~l~~~---~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
.++++ +.++.+.+|| ........+.. ..|...++++++-|..+.|++| .+|.|++||++..
T Consensus 2304 -------~~~tag~s~d~~n~~lwD----tl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr- 2368 (2439)
T KOG1064|consen 2304 -------LLATAGRSSDNRNVCLWD----TLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR- 2368 (2439)
T ss_pred -------hhhccccCCCCCcccchh----cccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH-
Confidence 34443 3567899999 22222233332 6899999999999999999999 8999999999843
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
+..+. + +. ++ .. .+|++|+..|.|+||++..... ++++.... ....+|. +.+ .
T Consensus 2369 ql~h~-------~-----~~----~~-~~-~~f~~~ss~g~ikIw~~s~~~l----l~~~p~e~--ak~gfFr-~~g--~ 2421 (2439)
T KOG1064|consen 2369 QLRHT-------F-----QA----LD-TR-EYFVTGSSEGNIKIWRLSEFGL----LHTFPSEH--AKQGFFR-NIG--M 2421 (2439)
T ss_pred HHHHH-------h-----hh----hh-hh-heeeccCcccceEEEEccccch----hhcCchhh--cccchhh-hcC--c
Confidence 33221 1 11 33 33 7999999999999999987643 34444322 1112221 112 4
Q ss_pred EEEECCCCCEEEEEcCC
Q 011257 346 DIKFARNGRHILSRDYM 362 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~d~ 362 (490)
.+-..+.++.+.+|.|+
T Consensus 2422 Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2422 QINVGQCNRIFSCGADG 2438 (2439)
T ss_pred eeeeccCceEEEecCCC
Confidence 44555556666556654
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=7e-08 Score=99.24 Aligned_cols=315 Identities=13% Similarity=0.144 Sum_probs=178.8
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEe----cCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..+.|.++.|-++...++.+..+|.|.+... .... .+.-|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-------------------------~E~VG----------- 117 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-------------------------IEIVG----------- 117 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-------------------------eEEEE-----------
Confidence 3478999999999999999999999999933 2221 11111
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEe----------------------eeccCCCcC------
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF----------------------DWNVHPEKA------ 161 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~----------------------~~~~~~~~~------ 161 (490)
.++..|.+++|+| |++.++.++.++++.+.+-. ....... .+++...+.
T Consensus 118 ~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~ 194 (928)
T PF04762_consen 118 SVDSGILAASWSP--DEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLR 194 (928)
T ss_pred EEcCcEEEEEECC--CcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhcc
Confidence 1236799999998 55699999989998887432 1111111 111111110
Q ss_pred ------CCCCCccccccccCceEEeccCCccccccccCCCCccccCCC------CCcEEEeeeecccccccccceeeeec
Q 011257 162 ------AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG------VSSLRLPVVVTSQETNLVAGCRRIYA 229 (490)
Q Consensus 162 ------~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~------~g~v~iw~~~~~~~~~~~~~~~~~~~ 229 (490)
...+.+. .......++|-.||+ ++++.+- ...+++|+ .++......
T Consensus 195 ~p~~~~~d~~~~s-~dd~~~~ISWRGDG~------------yFAVss~~~~~~~~R~iRVy~----ReG~L~stS----- 252 (928)
T PF04762_consen 195 DPTVPKVDEGKLS-WDDGRVRISWRGDGE------------YFAVSSVEPETGSRRVIRVYS----REGELQSTS----- 252 (928)
T ss_pred CCCCCccccCccc-cCCCceEEEECCCCc------------EEEEEEEEcCCCceeEEEEEC----CCceEEecc-----
Confidence 0001111 222334778888888 5554432 35788888 332211111
Q ss_pred cccccceeEEEecCCCCEEEEe-c---CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC
Q 011257 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 305 (490)
..-.+--.+++|.|.|+++|+. . ...|.+|..+ +-+... +.+ .+......|..+.|++++ .+||....|.
T Consensus 253 E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhge-F~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~ 326 (928)
T PF04762_consen 253 EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGE-FTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR 326 (928)
T ss_pred ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeee-Eec---CCCCCCceeeEEEECCCC-CEEEEEecCC
Confidence 1111223478999999999996 2 4567777765 322222 211 223456789999999999 8998877665
Q ss_pred eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC-CCEEEEE-cCCeEEEEec----cCC-------
Q 011257 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSR-DYMTLKLWDI----NMD------- 372 (490)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-g~~l~sg-~d~~i~iwd~----~~~------- 372 (490)
|.+|-..+..=..+....+... ..+..+.|+|. ...|... ..|.+..+++ ...
T Consensus 327 -vqLWt~~NYHWYLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D 392 (928)
T PF04762_consen 327 -VQLWTRSNYHWYLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPND 392 (928)
T ss_pred -ceEEEeeCCEEEEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccC
Confidence 9999877643111111111111 23445889984 3334444 3355555443 210
Q ss_pred CCceeeeeeeccccccccccc--------cCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 373 SGPVATFQVHEHLRPKLCDLY--------ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
...+..+.|..-..++..... .-....+|.+++|++++..+++-..||.|.+|....
T Consensus 393 ~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 393 NGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred ceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 112333333332222221111 111112577999999998899999999999998654
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=2.2e-07 Score=95.61 Aligned_cols=345 Identities=12% Similarity=0.112 Sum_probs=180.4
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCC-cccc-cccc--cceeecCCccccccccccCCccc------c
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG-QRRD-LEMM--DYSMSRHPEFRYKTEFQSHEPEF------D 104 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~-~~~~-~~~~--~~~~~~~p~~~~~~~~~~h~~~~------~ 104 (490)
...|.|++||||+..||..+.++++.+....= ..+.. .... ..+. -.++-| ++..+.|+|....- +
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f-d~i~E~~l~~~~~~~~~~VsVGW---GkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDF-DPISEVPLDSDDFGESKHVSVGW---GKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc-eEEEEeecCccccCCCceeeecc---CcccCccCcchhhhhhhhccC
Confidence 56899999999999999999999988875321 10000 0000 0000 000000 01112222222110 0
Q ss_pred ee------eeeeeccceeEEEEeecCCCcEEEEEeC------cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 105 YL------KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 105 ~~------~~~~~~~~V~~v~~~p~~~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
+. ..+..++.-..|+|- .||.+||+.+. -+.+|+|+-+ |.+....+.. . .
T Consensus 196 p~~~~~d~~~~s~dd~~~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v--------~-------g 257 (928)
T PF04762_consen 196 PTVPKVDEGKLSWDDGRVRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV--------D-------G 257 (928)
T ss_pred CCCCccccCccccCCCceEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC--------C-------C
Confidence 00 000122345568887 68899998754 2589999876 4443332211 0 1
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCC---CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEE
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGG---VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~---~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (490)
...+++|.|.|. +|++... ...|.+|+ .++...++..-.+ ......|..++|++|+..||
T Consensus 258 Le~~l~WrPsG~------------lIA~~q~~~~~~~VvFfE----rNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 258 LEGALSWRPSGN------------LIASSQRLPDRHDVVFFE----RNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred ccCCccCCCCCC------------EEEEEEEcCCCcEEEEEe----cCCcEeeeEecCC-CCCCceeeEEEECCCCCEEE
Confidence 122789999998 4554432 34566665 3332222211111 23456789999999999999
Q ss_pred Ee-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC----Ccccc----cc
Q 011257 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR----QSALC----DT 320 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~----~~~~~----~~ 320 (490)
.. .|. |.+|...+-.-..+.. ..+. ....+..+.|+|..+..|...+.+|.+..++.. .+... ..
T Consensus 321 v~~~~~-vqLWt~~NYHWYLKqe----i~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g 394 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYHWYLKQE----IRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG 394 (928)
T ss_pred EEecCC-ceEEEeeCCEEEEEEE----EEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence 98 544 9999887332111110 0111 223344599999887888888887777665442 11100 00
Q ss_pred c----------cceeccccCCCcccc-ccccccceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCc-------eeeeee
Q 011257 321 H----------SKLFEEQEAPGTRSF-FTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGP-------VATFQV 381 (490)
Q Consensus 321 ~----------~~~~~~~~~~~~~~~-~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~-------~~~~~~ 381 (490)
. +..|.....|.+... .-....+|.+++|++++..+++ -+||.|.+|........ ...+..
T Consensus 395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 474 (928)
T PF04762_consen 395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL 474 (928)
T ss_pred EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc
Confidence 0 111222222222211 1123468999999998876665 57899999986541111 001111
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEeecC---CeEEEEecCC
Q 011257 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSE 429 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~ 429 (490)
.... .. ........+..++|..+..+++....+ ..+.++++..
T Consensus 475 ~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 475 DSMD---IS--DSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred cccc---cc--ccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 0000 00 000011124578888777776665554 6788888743
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=1.1e-07 Score=85.90 Aligned_cols=256 Identities=9% Similarity=0.090 Sum_probs=141.0
Q ss_pred ECCCCCEEEEecC----------CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 43 ~s~dg~~latg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+||||+.|+++.. +..|.+||..+.+....+. ..++.++.. +
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~-----------~p~~p~~~~---~-------------- 104 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE-----------LPEGPRFLV---G-------------- 104 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc-----------cCCCchhhc---c--------------
Confidence 9999998877665 6799999999877431110 000000000 0
Q ss_pred cceeEEEEeecCCCcEEEEEe-C-cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 113 EKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~-~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
.....++++| +|+++++.. . +..|.+.|+.+++............ ++ +......+..+.||+.
T Consensus 105 ~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-------vy-~t~e~~~~~~~~Dg~~----- 169 (352)
T TIGR02658 105 TYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-------IF-PTANDTFFMHCRDGSL----- 169 (352)
T ss_pred CccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-------EE-EecCCccEEEeecCce-----
Confidence 1133567775 777888764 3 7899999999998877655432110 00 0000012233444442
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccccee-EEEecC-CCCEEEEecCCcEEEEEcCCCCc--
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNS-DGETFISADDLRINLWNLEISNQ-- 266 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~-~~~~l~~~~d~~i~~wd~~~~~~-- 266 (490)
..++-..+|....= ....+ ......+. .-.|.+ +++++.....|.|.+.|+.....
T Consensus 170 ------~~v~~d~~g~~~~~-------------~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 170 ------AKVGYGTKGNPKIK-------------PTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKF 229 (352)
T ss_pred ------EEEEecCCCceEEe-------------eeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCccee
Confidence 11222222322110 00000 11000000 003455 88888888559999999753322
Q ss_pred --eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccccceeccccCCCccc
Q 011257 267 --SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (490)
Q Consensus 267 --~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (490)
.+.++......-.-..+...-++++|++.++++... ..+.|.++|..+++.. ..+...
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~vG------- 298 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIELG------- 298 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeCC-------
Confidence 122111110000112444556999999944444332 2258999999998754 333322
Q ss_pred cccccccceEEEEECCCCC-EEEEEc--CCeEEEEeccCCCCceeee
Q 011257 336 FFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 336 ~~~~h~~~i~~l~~sp~g~-~l~sg~--d~~i~iwd~~~~~~~~~~~ 379 (490)
..+..++++||++ +|++.+ ++.|.+.|..+ ++.+.++
T Consensus 299 ------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 ------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred ------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 4688999999999 777653 48999999997 7777776
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.13 E-value=1.7e-08 Score=91.06 Aligned_cols=277 Identities=13% Similarity=0.123 Sum_probs=167.4
Q ss_pred ccEEEEEECCCCCEEEEecCC---------------CcEEEEEecCCCCCCCccccccc-ccc-eeecCCcccccccccc
Q 011257 36 DIISAIEFDKSGDHLATGDRG---------------GRVVLFERTDTRDNGGQRRDLEM-MDY-SMSRHPEFRYKTEFQS 98 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~d---------------g~v~iwd~~~~~~~~~~~~~~~~-~~~-~~~~~p~~~~~~~~~~ 98 (490)
..|.-+.|||.++||.+=+.. ..+.+||..++..+......... .++ -+.|+-+-.+.+.+.+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 468999999999999985533 35999999998865444333222 123 3455555445444444
Q ss_pred CCcccce---------eeeeeeccceeEEEEeecCCCcEEEE-----EeCcCeEEEEEccCCeEEEEeeeccCCCcCCCC
Q 011257 99 HEPEFDY---------LKSLEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (490)
Q Consensus 99 h~~~~~~---------~~~~~~~~~V~~v~~~p~~~~~~l~~-----~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
|...+-- .+.+. ...|....|+|..++..|+. ...++++++|.+-.+.......+-.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-------- 222 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-------- 222 (561)
T ss_pred CeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--------
Confidence 4311110 11111 15578888998666666555 3678899999998665443322221
Q ss_pred CCccccccccCceEEeccCCcccccccc---CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEe
Q 011257 165 GPIFGSHVSAIPKSYMANGGCGERNFGC---ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (490)
Q Consensus 165 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~---~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (490)
.....+.|.+.|+.+.+...- .+..+ -....+.+++ +...+ .+.. ..-.++|..++|
T Consensus 223 -------~~~~qLkW~~~g~~ll~l~~t~~ksnKsy----fgesnLyl~~-~~e~~-------i~V~-~~~~~pVhdf~W 282 (561)
T COG5354 223 -------VSGVQLKWQVLGKYLLVLVMTHTKSNKSY----FGESNLYLLR-ITERS-------IPVE-KDLKDPVHDFTW 282 (561)
T ss_pred -------ecccEEEEecCCceEEEEEEEeeecccce----eccceEEEEe-ecccc-------ccee-ccccccceeeee
Confidence 111167788888842111100 00000 0124556655 22111 1111 134589999999
Q ss_pred cCCCCEEEE--e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCc
Q 011257 242 NSDGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQS 315 (490)
Q Consensus 242 ~~~~~~l~~--~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~ 315 (490)
.|.++.+++ | .+..+.++|++. ...+. .....=..+.|+|.+ ++++.++-| |.+-+||....
T Consensus 283 ~p~S~~F~vi~g~~pa~~s~~~lr~-Nl~~~----------~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 283 EPLSSRFAVISGYMPASVSVFDLRG-NLRFY----------FPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cccCCceeEEecccccceeeccccc-ceEEe----------cCCcccccccccCcc-cEEEEecCCccccceEEeccCCc
Confidence 999888877 4 689999999983 32221 123333567899999 888887765 67999998876
Q ss_pred cccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE--c-----CCeEEEEecc
Q 011257 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-----YMTLKLWDIN 370 (490)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~-----d~~i~iwd~~ 370 (490)
..+ +..+.+. ..+-+.|+||++++.+. + |..+.|||+.
T Consensus 351 f~~---~~~~~~~--------------n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 351 FKV---AGAFNGL--------------NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred eEE---EEEeecC--------------CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 543 2234432 24556799999999874 1 5889999997
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=4.6e-09 Score=88.07 Aligned_cols=214 Identities=9% Similarity=0.005 Sum_probs=137.5
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
.++-+...|.|.++.. .........+.+... +-......++.|++.+..++++ .+|.+.+-+.... .++. -
T Consensus 87 ~l~~a~a~G~i~~~r~-~~~~ss~~L~~ls~~-ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~----v 158 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRN-DEDESSVHLRGLSSK-KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEK----V 158 (339)
T ss_pred eeeeccccceEEEEee-ccceeeeeecccchh-hhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--eeee----c
Confidence 3556677788888762 111111111110000 0001123567789989999998 8898884443311 1111 1
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC-CCC
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGR 354 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~ 354 (490)
++...|.-+.+...|+...++++.+|+.|+.+..||+|.... ..+.. .+-|...|.+|.-+| .+.
T Consensus 159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-----FIWHN---------SKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-----eeeec---------ceeeecceEEEecCCCCCc
Confidence 256889999999999988889999999999999999994331 12221 133557899998887 678
Q ss_pred EEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC--CEEEEeecCCeEEEEecCCCc
Q 011257 355 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 355 ~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~s~~~dg~i~vw~~~~~~ 431 (490)
+|++|+. ..|++||.++-++++..-.... +||.+.++|.- ++|+++-..| .+|-+...+.
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G----------------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~ 287 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKAKVGG----------------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKV 287 (339)
T ss_pred eEEEeccccceeeeehhcccCccccCcccc----------------ceEEEEecchhhhHHHHHHHhcC-ceEEEecccc
Confidence 9999974 8999999996577776544332 27899999953 3455555554 6777766543
Q ss_pred e----eeeEeccCCCceEEEEE
Q 011257 432 A----ESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 432 ~----~~~~~~~~~~~v~~~~~ 449 (490)
. ++...+.|.+-++.-.|
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred cchheeeeccccccceeecccc
Confidence 2 23455667766666666
No 271
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=8.6e-08 Score=80.81 Aligned_cols=226 Identities=13% Similarity=0.138 Sum_probs=128.0
Q ss_pred cccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCC
Q 011257 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (490)
Q Consensus 198 l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~ 276 (490)
+++.-.|..|.+-. ....-....++|. . .+.....-+.++|+||+.+||.+ +.|+|++||+. +...+.+- ....
T Consensus 11 ~lAi~qd~~iEiRs-a~Ddf~si~~kcq-V-pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~-p~~~ 85 (282)
T PF15492_consen 11 LLAILQDQCIEIRS-AKDDFSSIIGKCQ-V-PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVIP-PAMS 85 (282)
T ss_pred EEEEEeccEEEEEe-ccCCchheeEEEe-c-CCCCCchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEcC-cccc
Confidence 44555666666643 1111122223332 1 23333556789999999999999 89999999998 44444321 1111
Q ss_pred ccCCCCCceEEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCcccc-ccccceeccccCCCccccccccccceEEEEEC
Q 011257 277 NMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
........|..+.|.+.. ...|+.-..+|.++-|-+..+... ......|.. ...+...|.++.++
T Consensus 86 ~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf---------~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 86 FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF---------SSHYPHGINSAVYH 156 (282)
T ss_pred cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe---------cccCCCceeEEEEc
Confidence 112234667777776532 236777788888887776432110 000112111 12234689999999
Q ss_pred CCCCEEEEEc--C-C---------eEEEEeccCCCCceeeeeeec-cccc------cc---cc--cc--cCCCccceeeE
Q 011257 351 RNGRHILSRD--Y-M---------TLKLWDINMDSGPVATFQVHE-HLRP------KL---CD--LY--ENDSIFDKFEC 404 (490)
Q Consensus 351 p~g~~l~sg~--d-~---------~i~iwd~~~~~~~~~~~~~~~-~~~~------~~---~~--~~--~~~~~~~v~~~ 404 (490)
|..++|+.|+ . . -+..|.+-. +.+........ .... .. .. ++ .....-.|..+
T Consensus 157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred CCCCEEEEeccCCCCCccccccccCceEEEEcC-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 9988887752 1 1 356777664 43332211111 0000 00 00 00 01112236699
Q ss_pred EEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc
Q 011257 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 405 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
..||||.+||+...+|.|.+|++.+-+. ...++.
T Consensus 236 SlSPdg~~La~ih~sG~lsLW~iPsL~~-~~~W~~ 269 (282)
T PF15492_consen 236 SLSPDGSLLACIHFSGSLSLWEIPSLRL-QRSWKQ 269 (282)
T ss_pred EECCCCCEEEEEEcCCeEEEEecCcchh-hcccch
Confidence 9999999999999999999999997655 344443
No 272
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=4.4e-09 Score=102.68 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=136.3
Q ss_pred CCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCC
Q 011257 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (490)
Q Consensus 125 ~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~ 204 (490)
+...++.+..+..+.+||...+.+.......... .......+.++++.- ++++|+--
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-----------~l~~~~~~g~s~~~~------------~i~~gsv~ 154 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-----------TLYSSLIIGDSAEEL------------YIASGSVF 154 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceE-----------EEEeEEEEeccCcEE------------EEEecccc
Confidence 3457888888899999998876543322111100 000000111222222 78999999
Q ss_pred CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCC
Q 011257 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (490)
Q Consensus 205 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 283 (490)
+.|.+|+ .. .+... ..+.+|.+.+.++.++.||.++++. +|..+++|++++...... ..-+|+.
T Consensus 155 ~~iivW~-~~-~dn~p------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~-------~~fgHsa 219 (967)
T KOG0974|consen 155 GEIIVWK-PH-EDNKP------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC-------TGFGHSA 219 (967)
T ss_pred ccEEEEe-cc-ccCCc------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc-------ccccccc
Confidence 9999998 22 11111 1358999999999999999999999 999999999996654431 3568999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCC
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYM 362 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~ 362 (490)
.|+.+.|.|+ .+++++.|.+.++|+....+ +..++.|.. ..|..++..++...++++ .|+
T Consensus 220 Rvw~~~~~~n---~i~t~gedctcrvW~~~~~~-----l~~y~~h~g-----------~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 220 RVWACCFLPN---RIITVGEDCTCRVWGVNGTQ-----LEVYDEHSG-----------KGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred eeEEEEeccc---eeEEeccceEEEEEecccce-----ehhhhhhhh-----------cceeEEEEcCCceEEEeeccCc
Confidence 9999999996 79999999999999765433 345555542 578999999888888886 679
Q ss_pred eEEEEeccC
Q 011257 363 TLKLWDINM 371 (490)
Q Consensus 363 ~i~iwd~~~ 371 (490)
.+++||+..
T Consensus 281 ~lk~~~l~~ 289 (967)
T KOG0974|consen 281 TLKLWDLNG 289 (967)
T ss_pred chhhhhhhc
Confidence 999999864
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=3.6e-07 Score=96.01 Aligned_cols=291 Identities=12% Similarity=0.100 Sum_probs=153.2
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCc-cccccccCceEEeccCCccccccccCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI-FGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
.+++.+ .++..+++-+..+.|++||..+.....+ ...... ....|.. ...-..|..+++.+++..
T Consensus 572 gvavd~-~~g~lyVaDs~n~rI~v~d~~G~~i~~i-g~~g~~--G~~dG~~~~a~f~~P~GIavd~~gn~---------- 637 (1057)
T PLN02919 572 KLAIDL-LNNRLFISDSNHNRIVVTDLDGNFIVQI-GSTGEE--GLRDGSFEDATFNRPQGLAYNAKKNL---------- 637 (1057)
T ss_pred eEEEEC-CCCeEEEEECCCCeEEEEeCCCCEEEEE-ccCCCc--CCCCCchhccccCCCcEEEEeCCCCE----------
Confidence 466764 2455777777888999999876543222 211110 0011110 011234567888888762
Q ss_pred CccccCCCCCcEEEeeeecccccccc---cceeeeeccc------cccceeEEEecCC-CCEEEEe-cCCcEEEEEcCCC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLV---AGCRRIYAHA------HDYHINSISNNSD-GETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~---~~~~~~~~~~------~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~~ 264 (490)
+.++-..+..|+.+|. ........ +.....+..+ .-.....++++|+ +.++++. .++.|++||....
T Consensus 638 -LYVaDt~n~~Ir~id~-~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 638 -LYVADTENHALREIDF-VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred -EEEEeCCCceEEEEec-CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 2344445567777762 11111000 0000000000 0123457899995 5555555 7899999998743
Q ss_pred CceeeeeecC--CCccC------CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---------ccceecc
Q 011257 265 NQSFNIVDVK--PANME------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---------HSKLFEE 327 (490)
Q Consensus 265 ~~~~~~~~~~--~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------~~~~~~~ 327 (490)
. .. .+... ..... ..-.....++++|++..++++-+.++.|++||+.++..... .+..+-.
T Consensus 716 ~-v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 716 V-TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred e-EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 2 21 11000 00011 11234678999999834667777789999999987642100 0000000
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
...... ...-.....++++++|..+++-. +++|++||..+ +. +.++.+...... ...............+++
T Consensus 794 ~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v~tiaG~G~~G~-~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 794 HDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-VTTLAGTGKAGF-KDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-EEEEeccCCcCC-CCCcccccccCCceEEEE
Confidence 000000 00112346889999998777754 59999999974 33 333333211000 000000011111248999
Q ss_pred cCCCCEEEEeecCCeEEEEecCCCce
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+++|+++++-+.++.|++||+.+++.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999988888999999999998754
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.1e-08 Score=93.91 Aligned_cols=83 Identities=12% Similarity=0.265 Sum_probs=63.2
Q ss_pred cccccEEEEEECCC------C------CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCC
Q 011257 33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (490)
Q Consensus 33 ~h~~~V~~~~~s~d------g------~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~ 100 (490)
.|+..|+.+.|.|- + -+||++...|.|.+||...... ...++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-----------------------~~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-----------------------INWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-----------------------hhhhcCCC
Confidence 47899999999872 1 2578888899999999986653 24456666
Q ss_pred cccceeeeeeeccceeEEEEeecCCCc--EEEEEeCcCeEEEEEccCCeEEE
Q 011257 101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKK 150 (490)
Q Consensus 101 ~~~~~~~~~~~~~~V~~v~~~p~~~~~--~l~~~~~dg~i~lwd~~~~~~~~ 150 (490)
++|..++|.|..+.. .|++-....++.+|+..+|+...
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee
Confidence 779999999866543 55666777899999999987544
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=6.7e-08 Score=90.87 Aligned_cols=249 Identities=11% Similarity=0.119 Sum_probs=160.5
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-+|.+.|.-+.|+.+.+.|-|...+|.|.+|-+..+... .++.....
T Consensus 68 eGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-----------------------EEMiNnRn---------- 114 (1189)
T KOG2041|consen 68 EGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-----------------------EEMINNRN---------- 114 (1189)
T ss_pred ccCcceEEEEEeccccccccccCCCceEEEEeeecccHH-----------------------HHHhhCcC----------
Confidence 479999999999999999999999999999999877632 22221111
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
...|.+++|+ .+|..+.....||.|.+=.+++.++-.. ...+. . -..+.|++|.+
T Consensus 115 KSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~---------~------l~hv~ws~D~~------- 169 (1189)
T KOG2041|consen 115 KSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQ---------L------LAHVLWSEDLE------- 169 (1189)
T ss_pred ccEEEEEEEc--CCCcEEEEEEccCCEEEEeeccceecch-hcchh---------e------ccceeecccHH-------
Confidence 1668999998 5788999999999998887776553210 00000 0 00467888888
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeec---cccccceeEEEe--------cCCCCEEEEe-cCCcEEEE
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA---HAHDYHINSISN--------NSDGETFISA-DDLRINLW 259 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~--------~~~~~~l~~~-~d~~i~~w 259 (490)
.++.+-.+|...+||...+........|.-... ......+..+.| -|+...|+.+ ..|.+.+.
T Consensus 170 -----~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 170 -----QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred -----HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 677888889999998211111111122211110 111223445554 3578899999 89999887
Q ss_pred EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC---------eEEEEeCCCccccccccceeccccC
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---------SIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.-+..... .++ .....+..+.|+++| ..|+.++.+. .|.+|..- |+ .+.+++.+.
T Consensus 245 R~eND~~P-vv~--------dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-G~----i~gtlkvpg- 308 (1189)
T KOG2041|consen 245 RSENDPEP-VVV--------DTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-GH----IVGTLKVPG- 308 (1189)
T ss_pred hhcCCCCC-eEE--------ecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccc-hh----heEEEecCC-
Confidence 65533222 222 123678899999999 8999988753 34444322 11 123444333
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEcCCeEEEEecc
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
..|++++|-..|-.++.+-|+.|.+=+++
T Consensus 309 -----------~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 309 -----------SCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred -----------ceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 57899999888888887777777766655
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=2.4e-07 Score=76.92 Aligned_cols=242 Identities=9% Similarity=0.000 Sum_probs=145.0
Q ss_pred CcEEEEEeCcCeEEEEEccCCeEE-EEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCC
Q 011257 126 SALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (490)
Q Consensus 126 ~~~l~~~~~dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~ 204 (490)
..+|+.|+..|...+|...+.+.. ........ +-.+ +.-.+...--+..++.|
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn-------------------------~v~~-~~r~cd~~~~~~i~snd 137 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNN-------------------------DVTL-VKRYCDLKFPLNIASND 137 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeeccccc-------------------------chhh-hhhhcccccceeeccCC
Confidence 347889999999999998865422 21111110 0000 00001111146677888
Q ss_pred CcEEEeeeecccccccccceeeeecccccc--ceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCC
Q 011257 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (490)
Q Consensus 205 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 281 (490)
.++++.++.-+ .... ..|.. .+.++++++|++++++. +...|..|.+........-+ .....
T Consensus 138 ht~k~~~~~~~----s~~~------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-----~~a~t 202 (344)
T KOG4532|consen 138 HTGKTMVVSGD----SNKF------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-----YEAPT 202 (344)
T ss_pred cceeEEEEecC----cccc------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-----Eeccc
Confidence 88888872211 1111 12222 26789999999999996 88899999987554433221 12223
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC--EEEEE
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSR 359 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~--~l~sg 359 (490)
...-.+..|+... ..||++.+||++.|||++..... ....... -..|.+.++.+.|++-|. +|+..
T Consensus 203 ~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp---m~~~sst--------rp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 203 SDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP---MAEISST--------RPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred CCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc---hhhhccc--------CCCCCCceEEEEecCCCcceEEEEe
Confidence 4444678899888 89999999999999999975432 1111111 112568999999998553 44444
Q ss_pred c-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 360 D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 360 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
. -+.+.+.|+++ ....+.+........ ....+.++..+|+.++..+.+.+++ .+.=|++.+
T Consensus 271 Ehfs~~hv~D~R~-~~~~q~I~i~~d~~~-------~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 271 EHFSRVHVVDTRN-YVNHQVIVIPDDVER-------KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCcceEEEEEccc-CceeeEEecCccccc-------cccccccccccccCCCcccccccch-hhheeeccc
Confidence 4 38999999997 666655544333210 1111224467788777766665554 344555553
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=6.4e-08 Score=91.32 Aligned_cols=180 Identities=11% Similarity=0.034 Sum_probs=112.1
Q ss_pred ceeEEEecCCCCE-EEE-e-c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC--CeE
Q 011257 235 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 307 (490)
Q Consensus 235 ~v~~i~~~~~~~~-l~~-~-~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i 307 (490)
......|+|||+. ++. . . +..|.++|+.++. ...+ ....+......|+|||..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~l--------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEKI--------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEEE--------ecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5667899999984 554 3 3 4678888987443 3322 22344556788999994444444444 468
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC----CeEEEEeccCCCCceeeeeeec
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d----~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
.++|+.+++. +.+.... .......|+|||+.|+..++ ..|.+.|+.. ++. ..+....
T Consensus 260 y~~dl~~g~~-----~~LT~~~------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTL-----TQITNYP------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcE-----EEcccCC------------CccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 8888877652 2232221 11234579999998887543 3677777764 433 2222111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEeecC---------CeEEEEecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
.. ...|||||++|+..+.. ..|.+.|+.+++. ..+... .......|+|||.
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCCCC
Confidence 11 34799999998876643 3688889988865 334333 2334688999999
Q ss_pred CCCCCccC
Q 011257 455 SRPLGSLS 462 (490)
Q Consensus 455 ~~~~~~~~ 462 (490)
.....+..
T Consensus 381 ~I~f~~~~ 388 (419)
T PRK04043 381 SIMFIKYL 388 (419)
T ss_pred EEEEEEcc
Confidence 88877654
No 278
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.98 E-value=1.8e-08 Score=86.36 Aligned_cols=255 Identities=11% Similarity=0.139 Sum_probs=157.9
Q ss_pred ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEcc-CCeEEEEeeeccCCCcCCCCCCccc
Q 011257 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (490)
.++..+.||. +.|+....-|..+ -+++.+.|.++|+|--. .++.-....+.
T Consensus 15 ~ll~~~eG~~------------d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~-------------- 66 (404)
T KOG1409|consen 15 ELLSKIEGSQ------------DDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHY-------------- 66 (404)
T ss_pred hhhhhhcCch------------hhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhh--------------
Confidence 3566678887 8888888887554 68999999999999544 33322221111
Q ss_pred cccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEE
Q 011257 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (490)
Q Consensus 170 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (490)
+...+.++++.++.+ .|+.|-.+|++.-+.+....+.. ...+.+ ..|...+..+-|+...++++
T Consensus 67 mP~~~~~~~y~~e~~------------~L~vg~~ngtvtefs~sedfnkm---~~~r~~-~~h~~~v~~~if~~~~e~V~ 130 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESR------------RLYVGQDNGTVTEFALSEDFNKM---TFLKDY-LAHQARVSAIVFSLTHEWVL 130 (404)
T ss_pred CCCCceEeeeeccce------------EEEEEEecceEEEEEhhhhhhhc---chhhhh-hhhhcceeeEEecCCceeEE
Confidence 112334677777777 78888888888776632222221 122233 67889999999999888888
Q ss_pred Ee-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccc
Q 011257 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
+. .|..+.---.+.+...-... + ....+++.+.- .+...|...|.|.+-.+..... .++.+
T Consensus 131 s~~~dk~~~~hc~e~~~~lg~Y~------~---~~~~t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~--~~i~~---- 192 (404)
T KOG1409|consen 131 STGKDKQFAWHCTESGNRLGGYN------F---ETPASALQFDA---LYAFVGDHSGQITMLKLEQNGC--QLITT---- 192 (404)
T ss_pred EeccccceEEEeeccCCcccceE------e---eccCCCCceee---EEEEecccccceEEEEEeecCC--ceEEE----
Confidence 87 66666544444332221100 0 00000111100 1223334445544443332211 11233
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
+.+|.+.+.+++|.|..+.|.+| +|..+.+||+--.......+.+|...+ ..++.-
T Consensus 193 --------~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV---------------~~l~~~ 249 (404)
T KOG1409|consen 193 --------FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV---------------QALSYA 249 (404)
T ss_pred --------EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh---------------hhhhhh
Confidence 34456899999999999999998 679999999975344556777777653 356666
Q ss_pred CCCCEEEEeecCCeEEEEecCCC
Q 011257 408 GDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+--+.|++++.||.|.+|+.+..
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhheeeeeccCCCeEEEEeccce
Confidence 66678999999999999998754
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=4.2e-07 Score=81.62 Aligned_cols=144 Identities=16% Similarity=0.235 Sum_probs=103.3
Q ss_pred ccccceeEEEecCCCCEEEEe-cCC-cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 231 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~-~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
+|...|.-..+..+++-++.| .|| .+-++|.++.... .+.+.-+.|.++..+|+| +.++.+.....|.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence 344556666677777778888 666 8999999844322 234567889999999999 8899999999999
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE---cC--CeEEEEeccCCCCceeeeeeec
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg---~d--~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
++|+.++.. +..+.... +-|+...|||+++++|-+ +. ..|+++|+.. ++.. ......
T Consensus 427 vididngnv-----~~idkS~~-----------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy-~vTT~t 488 (668)
T COG4946 427 VIDIDNGNV-----RLIDKSEY-----------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIY-DVTTPT 488 (668)
T ss_pred EEEecCCCe-----eEeccccc-----------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEE-EecCCc
Confidence 999999874 33333221 679999999999999986 22 7899999984 4433 222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEee
Q 011257 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 417 (490)
..- .+-+|.||+++|..-+
T Consensus 489 a~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccc---------------cCcccCCCCcEEEEEe
Confidence 110 2678999999876544
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.5e-07 Score=78.11 Aligned_cols=254 Identities=12% Similarity=0.077 Sum_probs=153.9
Q ss_pred EEEEECC-----CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 39 SAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 39 ~~~~~s~-----dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
+.+.|-| .-.+||.|+..|...+|...+.+.. ......|...+ .
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h----------------------~~~cd~snn~v---------~ 119 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH----------------------LYQCDVSNNDV---------T 119 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccc----------------------eeeecccccch---------h
Confidence 4456666 2348999999999999999876632 11122222100 0
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
-+...+-+ ...+..++.|.++++.+++.+......-.+. ..-+.+++++|++
T Consensus 120 ~~~r~cd~----~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---------------~~~ns~~~snd~~--------- 171 (344)
T KOG4532|consen 120 LVKRYCDL----KFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---------------LTQNSLHYSNDPS--------- 171 (344)
T ss_pred hhhhhccc----ccceeeccCCcceeEEEEecCcccceeeccc---------------cceeeeEEcCCCc---------
Confidence 01122221 2247778889999999988765433222210 0012778999999
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
++++.+....|..|.+....+- ..+++....++.-.+..|+.....+|++ .||++.+||++.........
T Consensus 172 ---~~~~Vgds~~Vf~y~id~~sey-----~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~- 242 (344)
T KOG4532|consen 172 ---WGSSVGDSRRVFRYAIDDESEY-----IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI- 242 (344)
T ss_pred ---eEEEecCCCcceEEEeCCccce-----eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh-
Confidence 7888899999999873222221 1112223333445678899999999999 99999999999654433221
Q ss_pred cCCCccCCCCCceEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
..+-+.|.+.+..+.|+|.|. .+|...-.=+.+.+.|++++..+.. +...+.. +++..+.-|..-.|+.
T Consensus 243 --sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d~-------~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 243 --SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDDV-------ERKHNTQHIFGTNFNN 312 (344)
T ss_pred --cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCccc-------cccccccccccccccC
Confidence 123456899999999998664 3455555567899999999865421 1111111 0111123367777877
Q ss_pred CCCEEEEEcCCeEEEEecc
Q 011257 352 NGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 352 ~g~~l~sg~d~~i~iwd~~ 370 (490)
++.-+.+.+.-.+.=|++.
T Consensus 313 ~n~s~~v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 313 ENESNDVKNELQGAEYNIL 331 (344)
T ss_pred CCcccccccchhhheeecc
Confidence 7766666554444555554
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=8.7e-07 Score=93.15 Aligned_cols=238 Identities=10% Similarity=0.087 Sum_probs=132.7
Q ss_pred eeEEEEeecCCCcEEEEE-eCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCC--ccccccccCceEEeccCCccccccc
Q 011257 115 INKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP--IFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
...|++.+ +++.|+++ ...+.|+++|+.++....+.... ........+. .......|..++++|++..
T Consensus 626 P~GIavd~--~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G-~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~------ 696 (1057)
T PLN02919 626 PQGLAYNA--KKNLLYVADTENHALREIDFVNETVRTLAGNG-TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK------ 696 (1057)
T ss_pred CcEEEEeC--CCCEEEEEeCCCceEEEEecCCCEEEEEeccC-cccCCCCCChhhhHhhcCCCeEEEEecCCCe------
Confidence 56788875 44455554 44578999999887655443211 1000000010 0011234557889985442
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccc------cccceeEEEecCCCCEEEEe--cCCcEEEEEcCC
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~ 263 (490)
++++...++.|++||.....-....+........+ .-.....++++|+++.|+.+ .++.|++||+.+
T Consensus 697 -----LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 697 -----VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred -----EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 55677778888888831110000000000000001 11345679999999866665 689999999885
Q ss_pred CCceeeeeecCC------CccC--------CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 264 SNQSFNIVDVKP------ANME--------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 264 ~~~~~~~~~~~~------~~~~--------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
..... +....+ ..+. ........++++++| .++++-..+++|++||..++.. .++.+..
T Consensus 772 g~~~~-~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v-----~tiaG~G 844 (1057)
T PLN02919 772 GGSRL-LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRV-----TTLAGTG 844 (1057)
T ss_pred CcEEE-EEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeE-----EEEeccC
Confidence 43211 100000 0000 011234689999999 8889889999999999987653 2222211
Q ss_pred CCCcc--ccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCC
Q 011257 330 APGTR--SFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (490)
Q Consensus 330 ~~~~~--~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~ 374 (490)
..... ....+.-.....++++++|+.+++- .++.|++||+.+ ++
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~-~~ 891 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK-GE 891 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC-Cc
Confidence 00000 0011122356789999999977775 459999999986 44
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=4.4e-07 Score=85.69 Aligned_cols=152 Identities=11% Similarity=0.118 Sum_probs=89.5
Q ss_pred cceeEEEecCCCCEEEEe--c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCC--e
Q 011257 234 YHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--S 306 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~ 306 (490)
.......|+|||+.++.. . +..|.++|+..+ ...+ +..+........|+||| +.|+..+ ..+ .
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g-~~~~--------LT~~~~~d~~p~~SPDG-~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK-TLTQ--------ITNYPGIDVNGNFVEDD-KRIVFVSDRLGYPN 302 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC-cEEE--------cccCCCccCccEECCCC-CEEEEEECCCCCce
Confidence 444567899999887764 2 456778887643 3322 22223223456799999 6555544 333 5
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C---------CeEEEEeccCCCCce
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---------MTLKLWDINMDSGPV 376 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d---------~~i~iwd~~~~~~~~ 376 (490)
|.+.|+.+++.. .+.... . ....|||||++|+... . ..|.+.|+.. +. .
T Consensus 303 Iy~~dl~~g~~~-----rlt~~g------------~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~ 361 (419)
T PRK04043 303 IFMKKLNSGSVE-----QVVFHG------------K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-I 361 (419)
T ss_pred EEEEECCCCCeE-----eCccCC------------C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-e
Confidence 777788776531 111110 1 1248999999998642 1 2677778764 33 3
Q ss_pred eeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecCCCce
Q 011257 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSA 432 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~ 432 (490)
..+...... ....|+|||+.|+..+.++ .+.+.++.....
T Consensus 362 ~~LT~~~~~----------------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 362 RRLTANGVN----------------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred EECCCCCCc----------------CCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 334332111 1578999999887666432 466777765433
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=1e-08 Score=96.52 Aligned_cols=304 Identities=14% Similarity=0.189 Sum_probs=179.7
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.-.+++.++..+|.|+-+|.++.-| +.+-|+...-.. .+++..+..
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~p-------------------pr~l~h~tp-------------- 67 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTP-------------------PRWLHHITP-------------- 67 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCCC-------------------ceeeeccCc--------------
Confidence 3467889999999999999998776 455666543211 112222222
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEE-EeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
-.|-.+.|+|.+.-.+-++......-.+|++....-.. .+-.+++.. ....+.|.|+.
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsr-------------aitd~n~~~q~-------- 126 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSR-------------AITDINFNPQH-------- 126 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCcc-------------ceeccccCCCC--------
Confidence 23667788886655566666666666789886432111 111111100 00133344433
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEecCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISADDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~~wd~~~~~~~~~~ 270 (490)
.|.+++.+-|..+..|| ...... ....+ ..-......++|+. ++..+|+.....|++||.+.+.....
T Consensus 127 ---pdVlatcsvdt~vh~wd-~rSp~~-----p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~- 195 (1081)
T KOG0309|consen 127 ---PDVLATCSVDTYVHAWD-MRSPHR-----PFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC- 195 (1081)
T ss_pred ---Ccceeeccccccceeee-ccCCCc-----ceeee-ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE-
Confidence 45889999999999999 222221 11111 12223445678876 46666666788899999996665554
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.+.+|...|..++|..--...+.+++.||+|+.||........+ +..... .+|..-++-
T Consensus 196 ------s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt~-------------~piw~~r~~ 254 (1081)
T KOG0309|consen 196 ------SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTTN-------------FPIWRGRYL 254 (1081)
T ss_pred ------EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eecccc-------------Ccceecccc
Confidence 35668889999999875446789999999999999886532211 111111 356666666
Q ss_pred CCCCEEEE--E-cCCeEE---------EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC--EEEEe
Q 011257 351 RNGRHILS--R-DYMTLK---------LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATG 416 (490)
Q Consensus 351 p~g~~l~s--g-~d~~i~---------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~s~ 416 (490)
|-|+-... . ++..+- .|+..+...++.++.+|.+.+-...+--.. .+.+..|.+ .|+|=
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~-------e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK-------ECDGDYDSRDFQLVTW 327 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc-------cccCCCCccceeEEEe
Confidence 64332222 1 122333 345444567899999999864321111100 122222222 59999
Q ss_pred ecCCeEEEEecCCC
Q 011257 417 SYSNLFRVFGCSEG 430 (490)
Q Consensus 417 ~~dg~i~vw~~~~~ 430 (490)
+.|..+++|-+.+.
T Consensus 328 SkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDSQ 341 (1081)
T ss_pred ecCCceEeeeccHH
Confidence 99999999998753
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=104.47 Aligned_cols=195 Identities=16% Similarity=0.245 Sum_probs=135.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.++.=+| ...+.++|+.||.|++|....+......+..+. +....+.|+.+|.
T Consensus 2209 ~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------------s~vtr~~f~~qGn-------- 2264 (2439)
T KOG1064|consen 2209 ENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------------SRVTRSRFNHQGN-------- 2264 (2439)
T ss_pred CceeeecCCC--CCceEEecCCCceEEEEeccCCCeEEEeeccCc--------------chhhhhhhcccCC--------
Confidence 3355555555 334899999999999999988776655543322 1112556777776
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe----cCCcEEEEEcCCCCcee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSF 268 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d~~i~~wd~~~~~~~~ 268 (490)
...++..||.+.+|.+ . .+.... ...|.....++.|-. ..++++ +++.+.+||..-.....
T Consensus 2265 ----k~~i~d~dg~l~l~q~-~-------pk~~~s-~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2265 ----KFGIVDGDGDLSLWQA-S-------PKPYTS-WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred ----ceeeeccCCceeeccc-C-------Ccceec-cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence 6788899999999982 1 111111 256777777888765 455553 58899999976433322
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
-+ -..|.+.++++++.|.. .+|++|+.+|.|++||++..++. ++++ .
T Consensus 2330 ~v-------~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~----h~~~-----------------~---- 2376 (2439)
T KOG1064|consen 2330 LV-------HTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLR----HTFQ-----------------A---- 2376 (2439)
T ss_pred ee-------eeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHH----HHhh-----------------h----
Confidence 11 26799999999999998 99999999999999999986542 2221 1
Q ss_pred ECCCCCEEEEEc-CCeEEEEeccCCCCceeeeee
Q 011257 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (490)
Q Consensus 349 ~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~ 381 (490)
++ ...++++|+ .|.++||++.. -..+.++..
T Consensus 2377 ~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPS 2408 (2439)
T ss_pred hh-hhheeeccCcccceEEEEccc-cchhhcCch
Confidence 34 567888885 59999999986 566666554
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.90 E-value=2.8e-08 Score=84.05 Aligned_cols=312 Identities=12% Similarity=0.097 Sum_probs=161.2
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe---EEEEeeeccCCCcC-CCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKA-AGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
+.|++|.|. ..|.++++|...|.|.++.-.... .+-..+++.+.... +... . ....-.+.+.|..++..
T Consensus 27 d~ItaVefd--~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkS-l-eieEKin~I~w~~~t~r--- 99 (460)
T COG5170 27 DKITAVEFD--ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKS-L-EIEEKINAIEWFDDTGR--- 99 (460)
T ss_pred ceeeEEEec--cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhh-c-cHHHHhhheeeecCCCc---
Confidence 679999996 567799999988999999655432 22222222221100 0000 0 00011124555444432
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCcee
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 268 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~ 268 (490)
..++..+.|.+|++|.+ .........+. .-+. ++. +|-+.-+.+. ..+++=.+.....
T Consensus 100 -------~hFLlstNdktiKlWKi-yeknlk~va~n------nls~---~~~-~~~~g~~~s~--~~l~lprls~hd~-- 157 (460)
T COG5170 100 -------NHFLLSTNDKTIKLWKI-YEKNLKVVAEN------NLSD---SFH-SPMGGPLTST--KELLLPRLSEHDE-- 157 (460)
T ss_pred -------ceEEEecCCceeeeeee-ecccchhhhcc------cccc---ccc-cccCCCcCCH--HHhhcccccccce--
Confidence 26778889999999984 22222111110 0000 111 1111111110 0111111110111
Q ss_pred eeeecCCC--ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 269 NIVDVKPA--NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 269 ~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
++..+|. ....|.-.+.++.|+.|. ..+++ ..|=+|.+|++.....+.. +-.+..+. +.....-|++
T Consensus 158 -iiaa~p~rvyaNaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sFn-IVDiKP~n-------meeLteVItS 226 (460)
T COG5170 158 -IIAAKPCRVYANAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSFN-IVDIKPHN-------MEELTEVITS 226 (460)
T ss_pred -EEEeccceeccccceeEeeeeeecCch-heeee-ccceeeeeccccccCCceE-EEeccCcc-------HHHHHHHHhh
Confidence 1111111 125688889999999987 55554 5677899999875432211 11111111 1222346889
Q ss_pred EEECCCCC--EEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 347 IKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 347 l~~sp~g~--~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
..|+|... ++.+.+.|.|++-|++...-+...-+......-.+..-+-+..+..|.++.|+++|+++++-.. -+|++
T Consensus 227 aeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvki 305 (460)
T COG5170 227 AEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKI 305 (460)
T ss_pred cccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEE
Confidence 99999543 3334566999999998411111111000000000000111122223558999999999997665 68999
Q ss_pred EecCCCceeeeEeccCC------------Cce---EEEEEccCCCCCCCCccCcce
Q 011257 425 FGCSEGSAESTTLEASK------------NPM---RRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~------------~~v---~~~~~sp~~~~~~~~~~~~~~ 465 (490)
||+...+..+.++.-|. +.| -.+.||.|...+..++-....
T Consensus 306 wDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 306 WDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred EecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccce
Confidence 99997766566665442 233 357899999988888765543
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.6e-08 Score=95.17 Aligned_cols=224 Identities=16% Similarity=0.192 Sum_probs=146.9
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC---CCEEEEec
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISAD 252 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~ 252 (490)
.+..+|.|+ -++.++.-|.+.+ | ........+-+.....-.|-.+.|+|. ..++++..
T Consensus 29 a~si~p~gr------------di~lAsr~gl~i~-d------ld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts 89 (1081)
T KOG0309|consen 29 AVSINPSGR------------DIVLASRQGLYII-D------LDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS 89 (1081)
T ss_pred ceeeccccc------------hhhhhhhcCeEEE-e------ccCCCCCceeeeccCcchhcceecccCCCCceeEEecC
Confidence 566777777 5676776665543 2 011111111111111234556778775 23444445
Q ss_pred CCcEEEEEcCCC-CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 253 DLRINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 253 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
...-.+|++... .+.+.+ -+-+|...|+.+.|+|+.+..+++++.|-.+..||+++... +++.+..-.
T Consensus 90 ~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---p~ys~~~w~-- 158 (1081)
T KOG0309|consen 90 NQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---PFYSTSSWR-- 158 (1081)
T ss_pred cchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---ceeeeeccc--
Confidence 566677887633 233333 35789999999999999989999999999999999998643 244443322
Q ss_pred CccccccccccceEEEEECC-CCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-C
Q 011257 332 GTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-D 409 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 409 (490)
.....|+|+- ++..+|+...+.|.+||++.++.++..+++|...+ ..+.|.. -
T Consensus 159 ----------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v---------------n~~~fnr~~ 213 (1081)
T KOG0309|consen 159 ----------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV---------------NSIDFNRFK 213 (1081)
T ss_pred ----------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---------------ehHHHhhhh
Confidence 4567899986 55566665558899999999888999999876543 2555543 1
Q ss_pred CCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
...+.+.+.||+|++||.......-........+|..-.+-|=|.
T Consensus 214 ~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 214 YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred hhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 235778889999999999865543344444566777777777554
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.3e-07 Score=81.65 Aligned_cols=319 Identities=15% Similarity=0.162 Sum_probs=192.3
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
.-|.+.|+.+.-+. .+++.+++.||.++.|.-..-.. -.++..+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isG--------------------vEfVKhFraHL----------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISG--------------------VEFVKHFRAHL----------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccc--------------------eeehhhhHHHH-----------
Confidence 35888888887665 45999999999999998653221 12456677787
Q ss_pred ccceeEEEEeecCCCcEEEEEeC-cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEE--eccCCcccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY--MANGGCGER 188 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~~~~ 188 (490)
..|.+++.+ .++.++.+.+. |..++++|+++-.+....+...-+. .+.| ++.....
T Consensus 54 -~~I~sl~~S--~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~s-- 112 (558)
T KOG0882|consen 54 -GVILSLAVS--YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKIS-- 112 (558)
T ss_pred -HHHHhhhcc--ccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCeee--
Confidence 677778776 46777888676 9999999998866554333332111 1222 2211110
Q ss_pred ccccCCCCcc-ccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 189 NFGCASNDSS-FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 189 ~~~~~~~~~l-~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
.+ +..-.++.+.++| - ..+ ..+...+..-|..+|..+.+++.+..+++. ..|.|..|.....-+
T Consensus 113 --------~IAVs~~~sg~i~VvD-~-~~d----~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 113 --------LIAVSLFKSGKIFVVD-G-FGD----FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred --------eEEeecccCCCcEEEC-C-cCC----cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 22 3345677888887 1 111 111112236688999999999999999998 799999999873111
Q ss_pred eeee---eecCCC----ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccc-----cCCCc-
Q 011257 267 SFNI---VDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ-----EAPGT- 333 (490)
Q Consensus 267 ~~~~---~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~- 333 (490)
..+. +..|.. .+........++.|+|++ ..+.+-+.|..|+++++.++++.. .++.. ..+..
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvq----eiDE~~t~~~~q~ks~ 253 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQ----EIDEVLTDAQYQPKSP 253 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhh----hhhccchhhhhccccc
Confidence 1110 111111 122335667899999999 999999999999999999987542 11110 00000
Q ss_pred ---------------cccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccC---
Q 011257 334 ---------------RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN--- 395 (490)
Q Consensus 334 ---------------~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 395 (490)
+..-+.-...-+.+.|...|++|+.|+-=-|++.++.+ +...+.+-......--...++..
T Consensus 254 y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k 332 (558)
T KOG0882|consen 254 YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQK 332 (558)
T ss_pred cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhh
Confidence 00001011234667899999999999876789999987 55555442221110000000000
Q ss_pred ------C---CccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 396 ------D---SIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 396 ------~---~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
+ .-.+ .+.+.+|..+++++-..+.++++
T Consensus 333 ~~~~~~~~~a~~np--~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 333 SNLAALEVAASNNP--LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred ccchhhhhhhccCc--ccccCCCCeEEEeeeecceEEEE
Confidence 0 0001 23466677777777777777777
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2.2e-08 Score=85.97 Aligned_cols=160 Identities=16% Similarity=0.232 Sum_probs=112.5
Q ss_pred CCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccce
Q 011257 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (490)
Q Consensus 245 ~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (490)
+-.+++|.+..+-+-|++++-+. .+. ..+.|.+..|.-.+ +++..|..+|.|..+|++.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 33455566777888888855433 222 46778889999877 89999999999999999975210 01
Q ss_pred eccccCCCccccccccccceEEEEECC-CCCEEEEEc-CCeEEEEeccCCCCc---eeeeeeeccccccccccccCCCcc
Q 011257 325 FEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIF 399 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~-d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 399 (490)
...+ ---|...|+++..-. ++++|++.+ +|+|++||++. -++ +..+.+|......
T Consensus 290 ~~a~--------rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~----------- 349 (425)
T KOG2695|consen 290 WCAQ--------RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAY----------- 349 (425)
T ss_pred cceE--------EEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeecccccccc-----------
Confidence 1111 112446788887665 677777765 59999999986 565 8888888764321
Q ss_pred ceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCC
Q 011257 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (490)
Q Consensus 400 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 442 (490)
.-+-..+....+++++.|...|||.+++|.. +.++.....
T Consensus 350 --l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-l~tipf~~s 389 (425)
T KOG2695|consen 350 --LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-LCTIPFPYS 389 (425)
T ss_pred --cccccccccceEEEccCeeEEEEEecccCce-eeccCCCCc
Confidence 1345667778899999999999999999976 566655443
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=2.4e-08 Score=90.99 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=135.2
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.+.+.+++++.|.+|++|.+....+......|..++ ..|..+|.++.|-.+.+.++++ |+.|.+||.-.+....+..
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~- 821 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQME- 821 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhh-
Confidence 455688999999999999955555555566677777 8999999999999998888775 5669999987444332221
Q ss_pred cCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 273 VKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.....+.+..+..-|+ ..-+++.++...+++++|.+..+-. ..++....+. ...-+++++..
T Consensus 822 -----dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~----~E~kVcna~~-------Pna~~R~iaVa 885 (1034)
T KOG4190|consen 822 -----DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT----CELKVCNAPG-------PNALTRAIAVA 885 (1034)
T ss_pred -----cCcccCCCceeEecccCcchheeeeccchhhheeeecccccce----eeEEeccCCC-------CchheeEEEec
Confidence 1112233334444343 3133444478899999999986532 2222221111 11568999999
Q ss_pred CCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE-EecC
Q 011257 351 RNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCS 428 (490)
Q Consensus 351 p~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v-w~~~ 428 (490)
+.|++++++ +.|.|.+.|.++ ++.+..++...-. ...++ .|..+.|+....|.++.| |..-
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecd---------------llqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARN-GKVINSWRPMECD---------------LLQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCC-CceeccCCcccch---------------hhhhc-CchhHHHHhhcccceeEeeehhc
Confidence 999999998 779999999997 7766655433211 01222 345567777777888888 8776
Q ss_pred CCce
Q 011257 429 EGSA 432 (490)
Q Consensus 429 ~~~~ 432 (490)
+|..
T Consensus 949 dgim 952 (1034)
T KOG4190|consen 949 DGIM 952 (1034)
T ss_pred CCee
Confidence 6643
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=1.5e-07 Score=82.75 Aligned_cols=156 Identities=10% Similarity=0.146 Sum_probs=96.7
Q ss_pred eEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEeC
Q 011257 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDM 312 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~ 312 (490)
..+..+++++++|.+ .+....++++....+..+.++. .......+.+.|..+. .....+..- ..+.+|..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence 445677889999988 7777777777644432222111 1111222333333333 233333333 33334433
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceee-eeeecccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVAT-FQVHEHLRPKLC 390 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 390 (490)
..+ .....-||...++.|+|+||+++|++++ |..|++-.+.. ...+.. .-+|...+
T Consensus 140 ~~~-----------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFV---- 197 (390)
T KOG3914|consen 140 DSG-----------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCLGHKEFV---- 197 (390)
T ss_pred ccc-----------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhccccHhhe----
Confidence 322 1223456678999999999999999996 69999877764 333333 34577764
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
..++.-+ +..|++||.|++|++||+.+|+.
T Consensus 198 -----------S~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 198 -----------STISLTD-NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred -----------eeeeecc-CceeeecCCCCcEEEEecccCCc
Confidence 3677764 45689999999999999999987
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.78 E-value=1.6e-05 Score=69.47 Aligned_cols=244 Identities=13% Similarity=0.146 Sum_probs=139.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcC-eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.....++.+|. ....++.+-.-| ...+||..+++......... +.-|.. .-.||+||+
T Consensus 5 ~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~--------gRHFyG-----Hg~fs~dG~------- 63 (305)
T PF07433_consen 5 ARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP--------GRHFYG-----HGVFSPDGR------- 63 (305)
T ss_pred ccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC--------CCEEec-----CEEEcCCCC-------
Confidence 34455777773 345667777766 46789999998776554332 222222 348999999
Q ss_pred cCCCCcccc-----CCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecC--------CcEEE
Q 011257 192 CASNDSSFP-----PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD--------LRINL 258 (490)
Q Consensus 192 ~~~~~~l~~-----~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d--------~~i~~ 258 (490)
+|++ ....|.|-|||+ .. ..+....+ ..|.-....+.+.|||+.|+.+.. |..++
T Consensus 64 -----~LytTEnd~~~g~G~IgVyd~-~~-----~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 64 -----LLYTTENDYETGRGVIGVYDA-AR-----GYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred -----EEEEeccccCCCcEEEEEEEC-cC-----CcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 4443 345689999992 21 11112222 455556678889999988888532 22222
Q ss_pred EEcCCCCceeeeeecCC------Ccc--CCCCCceEEEEEcCCCCcEEEEEeCCCe-------EEEEeCCCccccccccc
Q 011257 259 WNLEISNQSFNIVDVKP------ANM--EDLTEVITSAEFHPTHCNMLAYSSSKGS-------IRLIDMRQSALCDTHSK 323 (490)
Q Consensus 259 wd~~~~~~~~~~~~~~~------~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~ 323 (490)
++.+-...+..++... ..+ .-|...+..+++.++| ..++..-..|. +-+++.... +.
T Consensus 132 -Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~------~~ 203 (305)
T PF07433_consen 132 -NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA------LR 203 (305)
T ss_pred -ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc------ce
Confidence 2222222222221110 134 3477789999999998 44444433332 223322211 11
Q ss_pred eeccccCCCccccccccccceEEEEECCCCCEEEEEcC--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccce
Q 011257 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
.+.... .......+.+-+|++++++.++++.+- +.+.+||..+ ++.+....... +
T Consensus 204 ~~~~p~-----~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D-----------------~ 260 (305)
T PF07433_consen 204 LLPAPE-----EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPD-----------------A 260 (305)
T ss_pred eccCCh-----HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCc-----------------e
Confidence 111110 111223367999999999999987653 9999999997 77776655444 2
Q ss_pred eeEEEcCCCCEEEEeecCCeE
Q 011257 402 FECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~dg~i 422 (490)
..++-.+++ ++++.+. |.+
T Consensus 261 cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred eeeeecCCc-eEEeCCC-ccE
Confidence 256666666 6665554 443
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=5.5e-06 Score=78.31 Aligned_cols=280 Identities=11% Similarity=0.089 Sum_probs=147.3
Q ss_pred CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCC
Q 011257 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (490)
Q Consensus 47 g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~ 126 (490)
+..+++++.+|.|..+|..+++.. | ...+.+.- ...+. -++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~---------------W------~~~~~~~~--------------~~~p~----v~~ 105 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRL---------------W------RVDLDERL--------------SGGVG----ADG 105 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEe---------------e------eecCCCCc--------------ccceE----EcC
Confidence 568888889999999998887632 0 00111100 01111 234
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCc
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~ 206 (490)
..++.++.++.+..+|..+++.......... +. . .... .++.++.+..++.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~---~---~p~v--------------~~~~v~v~~~~g~ 156 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VL---S---PPLV--------------ANGLVVVRTNDGR 156 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCce---------ee---c---CCEE--------------ECCEEEEECCCCe
Confidence 5788888999999999999887654433211 00 0 0000 1225666777888
Q ss_pred EEEeeeecccccccccceeeeeccccc-cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCC--
Q 011257 207 LRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-- 282 (490)
Q Consensus 207 v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-- 282 (490)
+..+|...+. ..+.......... ....+.... +..++.+ .++.+..+|.+++....+.- .. ...+..
T Consensus 157 l~a~d~~tG~----~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~-~~--~~~g~~~~ 227 (377)
T TIGR03300 157 LTALDAATGE----RLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR-VA--LPKGRTEL 227 (377)
T ss_pred EEEEEcCCCc----eeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec-cc--cCCCCCch
Confidence 8888821111 1110000000000 000011111 2356666 78899999988665443210 00 000000
Q ss_pred CceEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-
Q 011257 283 EVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (490)
Q Consensus 283 ~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg- 359 (490)
.....+.-+| .+ ..++.++.+|.++.||..+++.... ... ........ ++..++.+
T Consensus 228 ~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~W~----~~~--------------~~~~~p~~--~~~~vyv~~ 286 (377)
T TIGR03300 228 ERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVLWK----RDA--------------SSYQGPAV--DDNRLYVTD 286 (377)
T ss_pred hhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEEEe----ecc--------------CCccCceE--eCCEEEEEC
Confidence 0000010111 23 4677788899999999999875421 111 01111222 34555554
Q ss_pred cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc
Q 011257 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 360 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
.+|.+..+|..+ ++.+-......... ...... .+..|++++.+|.|+++|..+|+. +..++.
T Consensus 287 ~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~-~~~~~~ 348 (377)
T TIGR03300 287 ADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDGSF-VARLKT 348 (377)
T ss_pred CCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCCCE-EEEEEc
Confidence 569999999986 66554332111100 002222 456888899999999999999987 456655
Q ss_pred CCC
Q 011257 440 SKN 442 (490)
Q Consensus 440 ~~~ 442 (490)
+..
T Consensus 349 ~~~ 351 (377)
T TIGR03300 349 DGS 351 (377)
T ss_pred CCC
Confidence 443
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=4.3e-05 Score=67.36 Aligned_cols=181 Identities=15% Similarity=0.161 Sum_probs=108.4
Q ss_pred eeEEEec-CCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCC-CCCceEEEEEcCCCCcEEEEEeCC--------C
Q 011257 236 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G 305 (490)
Q Consensus 236 v~~i~~~-~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d--------g 305 (490)
...+++. +++. |+.+..+.+.++|..+. ....+... .... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~~~~~d~~~g-~~~~~~~~---~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGGIAVVDPDTG-KVTVLADL---PDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTCEEEEETTTT-EEEEEEEE---ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCE-EEEEEcCceEEEecCCC-cEEEEeec---cCCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 4566777 5654 44453344566688743 33322211 0012 45678899999999 777766543 5
Q ss_pred eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cC-CeEEEEeccCCCCceeeeee--
Q 011257 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQV-- 381 (490)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d-~~i~iwd~~~~~~~~~~~~~-- 381 (490)
.|..++.. ++.. .....- ...+.|+|+||++.|+.. +. +.|..+++...+..+.....
T Consensus 116 ~v~~~~~~-~~~~----~~~~~~-------------~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVADGL-------------GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp EEEEEETT-SEEE----EEEEEE-------------SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEECCC-CeEE----EEecCc-------------ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 57777766 3321 111111 346889999999988765 33 89999999753432321111
Q ss_pred e-ccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEc-cCCC
Q 011257 382 H-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRP 454 (490)
Q Consensus 382 ~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~ 454 (490)
+ ...... .-.+++..+|++.++.-..+.|.+++.+ |+. +..+......+++++|. |+..
T Consensus 178 ~~~~~~g~------------pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 178 DFPGGPGY------------PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-LREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp E-SSSSCE------------EEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-EEEEE-SSSSEEEEEEESTTSS
T ss_pred EcCCCCcC------------CCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-EEEEcCCCCCEEEEEEECCCCC
Confidence 1 111000 1268999999988887788999999988 765 56666655689999995 4433
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=3.4e-07 Score=80.49 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=96.2
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe----cCCcEEEEEcCCCCceeeeee
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+++.+..+....+++.....+ ..+....+ .-.....++.|..+......+ +...+.+|.... ...
T Consensus 76 llAv~~~~K~~~~f~~~~~~~---~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~----- 144 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPK---GAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRC----- 144 (390)
T ss_pred EEEEEeCCCceEEEEEecCCC---cceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cCc-----
Confidence 677776666665665222222 11111111 111222344454444444443 344555555542 222
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
..+-+|-..++.++++||+ ++++++..|..||+-.......+ .. +.-||..-|..++.-++
T Consensus 145 ---~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~I----es-----------fclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 145 ---EPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVI----ES-----------FCLGHKEFVSTISLTDN 205 (390)
T ss_pred ---chhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccch----hh-----------hccccHhheeeeeeccC
Confidence 2457899999999999999 99999999999999776653221 11 24556788999999865
Q ss_pred CCEEEEE-cCCeEEEEeccCCCCceeeeeeec
Q 011257 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 353 g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
. .|++| +|+++++||+.+ ++.+.++....
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~s-gk~L~t~dl~s 235 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITS-GKLLDTCDLSS 235 (390)
T ss_pred c-eeeecCCCCcEEEEeccc-CCcccccchhH
Confidence 4 46664 789999999998 88777665443
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=3.1e-06 Score=80.81 Aligned_cols=257 Identities=14% Similarity=0.147 Sum_probs=159.2
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
...-.++.|+|.| ++|.|+.. .|.+-|..+-+ .+..+.-|. ..
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----------------------~iqsie~h~------------s~ 57 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----------------------LIQSIELHQ------------SA 57 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhh-----------------------hhhccccCc------------cc
Confidence 3346789999998 88888754 78888876544 456677777 77
Q ss_pred eeEEEEeecCC----------CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 115 INKIRWCQSAN----------SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 115 V~~v~~~p~~~----------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
|+.|+|.|.+- .-+++++...|.|.+||...+.....
T Consensus 58 V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--------------------------------- 104 (1062)
T KOG1912|consen 58 VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--------------------------------- 104 (1062)
T ss_pred eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh---------------------------------
Confidence 99999998421 12345555567777777655432211
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC---CC-CEEEEe-cCCcEEEE
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DG-ETFISA-DDLRINLW 259 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~~~-~d~~i~~w 259 (490)
+..|..++..++|-+ +. ..|+.- ...++.+|
T Consensus 105 --------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLw 140 (1062)
T KOG1912|consen 105 --------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLW 140 (1062)
T ss_pred --------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEE
Confidence 133445556666654 34 334443 68899999
Q ss_pred EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc---CCCc--c
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE---APGT--R 334 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~--~ 334 (490)
+..++++..+ .........|+.+.|-..+.|..-+..|.+.+-+.-.......+.+.+.... ++.. +
T Consensus 141 ntdtG~k~Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 141 NTDTGEKFWK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EccCCceeec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhh
Confidence 9987766543 2334566778999998778888888888888776543322222222222111 1000 0
Q ss_pred ccc-----------cccccceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCcccee
Q 011257 335 SFF-----------TEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (490)
Q Consensus 335 ~~~-----------~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (490)
... ....-..-.++|+|.-+.++- .-...+.++|++. ..++.......+...
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak--------------- 276 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK--------------- 276 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc---------------
Confidence 000 000111334678886554444 4447899999997 777777666555322
Q ss_pred eEEEcCCCC--EEEEeecCCeEEEEecCC
Q 011257 403 ECCLSGDGG--RVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 403 ~~~~s~d~~--~l~s~~~dg~i~vw~~~~ 429 (490)
-+.+-|+++ .|.+.-.||.+.+|--+.
T Consensus 277 fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 567777665 688899999999997664
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=8.1e-06 Score=69.15 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=32.2
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 281 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
....|..|..+||| .+||+.+.+|.|.+|++.+-+.
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 46779999999999 9999999999999999987543
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.70 E-value=5.5e-05 Score=66.73 Aligned_cols=147 Identities=11% Similarity=0.145 Sum_probs=87.5
Q ss_pred cceeEEEecCCCCEEEEe-cC--------CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC
Q 011257 234 YHINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 304 (490)
...+.+++.++|++.++. .. +.|..++.. .+.... .......+.++|+|++..++++-+..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~--------~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVV--------ADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEE--------EEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--CeEEEE--------ecCcccccceEECCcchheeeccccc
Confidence 345678888888877764 21 445566655 222221 12244568999999993344566778
Q ss_pred CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeec
Q 011257 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
+.|..+++..........+.+..... -.+....+++..+|++.++. ..+.|.++|.+ ++.+..+....
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~ 224 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPG---------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPV 224 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SS---------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SS
T ss_pred ceeEEEeccccccceeeeeeEEEcCC---------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCC
Confidence 99999998643321111122211110 00247789999999988876 45999999987 78887776653
Q ss_pred cccccccccccCCCccceeeEEEc-CCCCEEEEe
Q 011257 384 HLRPKLCDLYENDSIFDKFECCLS-GDGGRVATG 416 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~ 416 (490)
.. +++++|. ++.+.|...
T Consensus 225 ~~---------------~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 PR---------------PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SS---------------EEEEEEESTTSSEEEEE
T ss_pred CC---------------EEEEEEECCCCCEEEEE
Confidence 22 4589994 565655543
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=8.5e-08 Score=87.52 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=131.3
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...+|+..|..++--.+.+-+++++.|.+|++|.+...... .. .....-+++.|+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~~-------tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------IG-------TSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------cc-------cceeeeEhhhcc---------
Confidence 35689999999887777888999999999999998753311 00 001224567888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEE-EeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
.+|+++.|.. +-. ..++.||-|.+||.--++... ....+.+ +... .+...++-
T Consensus 785 ---k~i~~igfL~--~lr--~i~ScD~giHlWDPFigr~Laq~~dapk~-------~a~~-------~ikcl~nv----- 838 (1034)
T KOG4190|consen 785 ---KPIHDIGFLA--DLR--SIASCDGGIHLWDPFIGRLLAQMEDAPKE-------GAGG-------NIKCLENV----- 838 (1034)
T ss_pred ---Ccccceeeee--ccc--eeeeccCcceeecccccchhHhhhcCccc-------CCCc-------eeEecccC-----
Confidence 8899999983 322 345668999999986654322 1111100 0000 11222221
Q ss_pred ccccCCCCccccC-CCCCcEEEeeeecccccccccceeeeec--cccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC
Q 011257 189 NFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 189 ~~~~~~~~~l~~~-~~~g~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
....++++ +...+|+++| .+..+- .|.-... .+...-+++++..+.|++++.+ +.|+|.+.|.+++
T Consensus 839 -----~~~iliAgcsaeSTVKl~D-aRsce~----~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 839 -----DRHILIAGCSAESTVKLFD-ARSCEW----TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred -----cchheeeeccchhhheeee-cccccc----eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCC
Confidence 11133444 6788999988 222111 1111111 3445678899999999999999 9999999999944
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEE-EeCCCcc
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL-IDMRQSA 316 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i-wd~~~~~ 316 (490)
..+..+ .........++ .|.. ..++....|.++.+ |-...+.
T Consensus 909 -~vINsw-------rpmecdllqla-apsd-q~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 909 -KVINSW-------RPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred -ceeccC-------Ccccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCCe
Confidence 444322 22222222333 2444 57777778888888 8766653
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.66 E-value=1.2e-06 Score=72.58 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=87.7
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEec------CCcEEEEEcCCCCceeee
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD------DLRINLWNLEISNQSFNI 270 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------d~~i~~wd~~~~~~~~~~ 270 (490)
-++++..||.+.+++... .. +..+.....|.+ -.+.+....++.+.++. -+..+.|+++..+....
T Consensus 103 ~V~~~~~dg~~~v~s~~~--~~----~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~- 174 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDK--DL----ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP- 174 (319)
T ss_pred ceEecCCCceEEEEechH--HH----hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccc-
Confidence 578899999999987211 11 111111011111 11223333455555532 33455666652221110
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
... -...|.+++-+|....++++|+.||.+.+||.+.... +...+ ..|..+++.+-|+
T Consensus 175 ------~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~---p~S~l------------~ahk~~i~eV~FH 232 (319)
T KOG4714|consen 175 ------SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM---PVSLL------------KAHKAEIWEVHFH 232 (319)
T ss_pred ------ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc---hHHHH------------HHhhhhhhheecc
Confidence 011 1233899999998768899999999999999998632 23344 4445899999999
Q ss_pred C-CCCEEEEE-cCCeEEEEecc
Q 011257 351 R-NGRHILSR-DYMTLKLWDIN 370 (490)
Q Consensus 351 p-~g~~l~sg-~d~~i~iwd~~ 370 (490)
| ++..|+++ .||.+..||..
T Consensus 233 pk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 233 PKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred CCCchheeEecCCCcEEEEcCC
Confidence 9 67778776 56999999987
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1e-06 Score=78.70 Aligned_cols=280 Identities=9% Similarity=-0.019 Sum_probs=161.1
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
+..|.+.|+.+.-. ..+++.+++.||.++.|.-..-.......+... +. ....+++.+-+|.
T Consensus 5 symhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFra-----HL-------~~I~sl~~S~dg~--- 66 (558)
T KOG0882|consen 5 SYMHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-----HL-------GVILSLAVSYDGW--- 66 (558)
T ss_pred hhcccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHH-----HH-------HHHHhhhccccce---
Confidence 33444667766554 345999999999999997654222222111100 00 1112455566666
Q ss_pred cccccCCCCccccCCC-CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC--CEEEEe--cCCcEEEEEcC
Q 011257 188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA--DDLRINLWNLE 262 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~-~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~--~d~~i~~wd~~ 262 (490)
+..+.+. |..++++| +.+.+.....+. ..-...+ +...++.. ..++.+ +++.+.++|-.
T Consensus 67 ---------L~~Sv~d~Dhs~KvfD-vEn~DminmiKL-----~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 67 ---------LFRSVEDPDHSVKVFD-VENFDMINMIKL-----VDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred ---------eEeeccCcccceeEEE-eeccchhhhccc-----ccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCc
Confidence 5667666 99999999 444433222211 0011111 11122211 134444 79999999987
Q ss_pred CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc-cccccccceeccccCCCccccccccc
Q 011257 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
........ .-.-|..+|..+.+.|.+ ..+++....|.|.-|..... +.... --.+...... ..--+..-.
T Consensus 131 ~d~~q~~~------fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~-~l~~~~K~eT-dLy~f~K~K 201 (558)
T KOG0882|consen 131 GDFCQDGY------FKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRT-NLNFELKHET-DLYGFPKAK 201 (558)
T ss_pred CCcCccce------ecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccc-cccccccccc-hhhcccccc
Confidence 44422221 224589999999999999 89999999999999988731 00000 0001000000 000001112
Q ss_pred cceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeecccc-------ccccccc-----------cCCCcccee
Q 011257 342 ASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLR-------PKLCDLY-----------ENDSIFDKF 402 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~-----------~~~~~~~v~ 402 (490)
....++.|+|+|..+.+ +.|..|++++.++ ++.++.+....... ..+..+. +......-+
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~Kt-GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKT-GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEecc-chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence 45789999999999998 5679999999997 76665543221100 0000000 000011124
Q ss_pred eEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 403 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.++|...|++|+.|+-=| |+|.++.++++
T Consensus 281 ~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred eeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 788999999999998765 99999999877
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=1.9e-07 Score=77.25 Aligned_cols=105 Identities=14% Similarity=0.241 Sum_probs=78.4
Q ss_pred CCCCCccccccccccccccccccccccccccccccEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCccccccccc
Q 011257 3 NGGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMD 81 (490)
Q Consensus 3 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 81 (490)
|+=|.......-+.|.+.+. .......+-.+.|++++-+|. ..++++|+.||.+.+||......
T Consensus 150 ~~~g~~n~~d~~~a~~~~p~---~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~------------ 214 (319)
T KOG4714|consen 150 GGCGNWNAQDNFYANTLDPI---KTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM------------ 214 (319)
T ss_pred CCcceEeeccceeeeccccc---ccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc------------
Confidence 34455555666677777763 223333444556999999995 45788899999999999986532
Q ss_pred ceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccC
Q 011257 82 YSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE 145 (490)
Q Consensus 82 ~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~ 145 (490)
....+..|+ ..|..|-|+| .++..|++++.||.+..||..+
T Consensus 215 ----------p~S~l~ahk------------~~i~eV~FHp-k~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 215 ----------PVSLLKAHK------------AEIWEVHFHP-KNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------hHHHHHHhh------------hhhhheeccC-CCchheeEecCCCcEEEEcCCC
Confidence 134567888 7799999999 5578899999999999999876
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=4.5e-05 Score=76.95 Aligned_cols=216 Identities=14% Similarity=0.137 Sum_probs=127.2
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
+.|.++.|..++..+..+..+|.|.+-|.++... +..|.. +..|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------eivg~v-----------d~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------EIVGNV-----------DNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------eeeeec-----------cCce
Confidence 5899999999999999999999999988776541 122221 2679
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEcc----CCeEEEEeeeccCCCcCCCCCC---cc--------------------
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQ----EKKVKKVFDWNVHPEKAAGNGP---IF-------------------- 168 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~----~~~~~~~~~~~~~~~~~~~~~~---~~-------------------- 168 (490)
.+++|+| |+..++..+.++++.+.+.. ..+....-............|. .+
T Consensus 113 ~aaswS~--Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 113 SAASWSP--DEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred EEEeecC--CCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence 9999997 55688888888888765431 1110000000000000000000 00
Q ss_pred --ccccccCceEEeccCCccccccccCCCCcccc-----CCCCCcEEEeeeecccccccccceeeeeccccccceeEEEe
Q 011257 169 --GSHVSAIPKSYMANGGCGERNFGCASNDSSFP-----PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (490)
Q Consensus 169 --~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~-----~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (490)
..+..-..+.|--||+ ++++ ......+++|| +........+. ....-.+++|
T Consensus 191 ~~~~~~~~~~IsWRgDg~------------~fAVs~~~~~~~~RkirV~d--rEg~Lns~se~-------~~~l~~~LsW 249 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRGDGE------------YFAVSFVESETGTRKIRVYD--REGALNSTSEP-------VEGLQHSLSW 249 (1265)
T ss_pred chhhccCCceEEEccCCc------------EEEEEEEeccCCceeEEEec--ccchhhcccCc-------ccccccceee
Confidence 0112223577888887 5554 33337999999 11112111111 1122357899
Q ss_pred cCCCCEEEEe----cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEE---EeCCCeEEEEeCCC
Q 011257 242 NSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY---SSSKGSIRLIDMRQ 314 (490)
Q Consensus 242 ~~~~~~l~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~---~~~dg~i~iwd~~~ 314 (490)
-|.|.++++- +|+.|.+|..+.-..- .. .+ .++.....+..++|+.++ .+|++ ......|++|-+.+
T Consensus 250 kPsgs~iA~iq~~~sd~~IvffErNGL~hg-~f-~l---~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 250 KPSGSLIAAIQCKTSDSDIVFFERNGLRHG-EF-VL---PFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cCCCCeEeeeeecCCCCcEEEEecCCcccc-cc-cc---CCcccccchheeeecCCC-CceeeeecccccceEEEEEecC
Confidence 9999999983 5778999987632211 11 00 122334448999999998 88887 55556699998876
Q ss_pred cc
Q 011257 315 SA 316 (490)
Q Consensus 315 ~~ 316 (490)
..
T Consensus 324 yh 325 (1265)
T KOG1920|consen 324 YH 325 (1265)
T ss_pred eE
Confidence 53
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.53 E-value=5.5e-05 Score=71.51 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=79.3
Q ss_pred CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccc
Q 011257 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (490)
Q Consensus 245 ~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (490)
+..++.+ .++.++.||..+++..... .... ...+.. .+ ..++.++.+|.+..+|..+++...+. .
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~------~~~~----~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~~~W~~-~ 306 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKR------DASS----YQGPAV--DD-NRLYVTDADGVVVALDRRSGSELWKN-D 306 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEee------ccCC----ccCceE--eC-CEEEEECCCCeEEEEECCCCcEEEcc-c
Confidence 3455555 8899999999866544332 1111 112222 34 57777889999999999988754321 0
Q ss_pred eeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCcccee
Q 011257 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (490)
.+.. ....+... .+..|+++ .+|.|.++|..+ ++.+..++.+..... .
T Consensus 307 ~~~~--------------~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t-G~~~~~~~~~~~~~~--------------~ 355 (377)
T TIGR03300 307 ELKY--------------RQLTAPAV--VGGYLVVGDFEGYLHWLSRED-GSFVARLKTDGSGIA--------------S 355 (377)
T ss_pred cccC--------------CccccCEE--ECCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCccc--------------c
Confidence 1110 01111122 34566665 569999999987 888887776553210 0
Q ss_pred eEEEcCCCCEEEEeecCCeEEEE
Q 011257 403 ECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 403 ~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
...+. + +.|+.++.||.|+.+
T Consensus 356 sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEE-C-CEEEEEeCCceEEEe
Confidence 22333 3 347788899988765
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=2.3e-07 Score=55.09 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.2
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEE
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd 63 (490)
...|.+.|++|+|+|++.+||+|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457999999999999999999999999999997
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.49 E-value=3.1e-07 Score=54.51 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=33.4
Q ss_pred CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+++.++.+|... |.+++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~---------------i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSS---------------INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSS---------------EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCc---------------EEEEEEecccccceeeCCCCEEEEEC
Confidence 456778888776 56999999999999999999999997
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=0.00016 Score=63.48 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=142.1
Q ss_pred ccEEEEEECC-CCCEEEEecCCCc-EEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 36 DIISAIEFDK-SGDHLATGDRGGR-VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 36 ~~V~~~~~s~-dg~~latg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.....++.+| ++..+|.+-.-|+ ..+||..+++....+ ..|+ -..|.||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~------------~a~~---gRHFyGHg------------- 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL------------WAPP---GRHFYGHG------------- 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE------------cCCC---CCEEecCE-------------
Confidence 3456788899 5667888877664 778999887743111 1111 23366775
Q ss_pred ceeEEEEeecCCCcEEEEEe-----CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 114 KINKIRWCQSANSALYLLST-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~-----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
.|+| +|++|++.- ..|.|-|||... ....+-++...- ..|-.+.+.|||+.+.+
T Consensus 57 -----~fs~--dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~G-------------IGPHel~l~pDG~tLvV 115 (305)
T PF07433_consen 57 -----VFSP--DGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHG-------------IGPHELLLMPDGETLVV 115 (305)
T ss_pred -----EEcC--CCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCC-------------cChhhEEEcCCCCEEEE
Confidence 6775 777888863 458999999993 233333332110 12225778888874211
Q ss_pred cccc--CCCC----ccccCCCCCcEEEeeeecccccccccceeee-ec--cccccceeEEEecCCCCEEEEe-cCCc---
Q 011257 189 NFGC--ASND----SSFPPGGVSSLRLPVVVTSQETNLVAGCRRI-YA--HAHDYHINSISNNSDGETFISA-DDLR--- 255 (490)
Q Consensus 189 ~~~~--~~~~----~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~i~~~~~~~~l~~~-~d~~--- 255 (490)
...- ...| .|=....+.++.+.| ...++.+.. .+ .-|...++.+++.++|..++.. ..+.
T Consensus 116 ANGGI~Thpd~GR~kLNl~tM~psL~~ld-------~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 116 ANGGIETHPDSGRAKLNLDTMQPSLVYLD-------ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred EcCCCccCcccCceecChhhcCCceEEEe-------cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 1110 0000 122222333343332 011111111 12 3466789999999999887775 3321
Q ss_pred ----EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 256 ----INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 256 ----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
+-+++.. ..+..+.............+-+|++++++ ..+ +|+=..+.+.+||..+++.. .....
T Consensus 189 ~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~~----~~~~l--- 257 (305)
T PF07433_consen 189 APPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRLL----GSVPL--- 257 (305)
T ss_pred cCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCEe----ecccc---
Confidence 3333332 22333333222334456889999999998 555 55556889999999998753 22222
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEcCCeEEEE
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iw 367 (490)
..+..++-.+++ ++++...|.+...
T Consensus 258 -----------~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 258 -----------PDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred -----------CceeeeeecCCc-eEEeCCCccEEEc
Confidence 236667777666 6666555664433
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.6e-06 Score=74.88 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=94.0
Q ss_pred cccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEE
Q 011257 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRL 309 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~i 309 (490)
....|.++.|...++++..| ..|.|..+|++...+- .. .+...--|...|+++..-. ++ ..|++.+.+|+|++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG-~~---~~a~rlyh~Ssvtslq~Lq~s~-q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG-NG---WCAQRLYHDSSVTSLQILQFSQ-QKLMASDMTGKIKL 325 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC-CC---cceEEEEcCcchhhhhhhcccc-ceEeeccCcCceeE
Confidence 34678888898888999998 9999999999865221 00 0011234788899988776 44 78999999999999
Q ss_pred EeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeecc
Q 011257 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
||++.-+ +.+.+.++++|... ..-.-+-..+....+++ |+|...+||.++. ++.+.++.....
T Consensus 326 yD~R~~K-~~~~V~qYeGHvN~----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~s 389 (425)
T KOG2695|consen 326 YDLRATK-CKKSVMQYEGHVNL----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPYS 389 (425)
T ss_pred eeehhhh-cccceeeeeccccc----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCCc
Confidence 9999754 32335677776422 11122334555555665 5679999999997 888887765543
No 308
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.00056 Score=64.32 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=60.2
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE
Q 011257 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg 359 (490)
.....|.+.+++|+. ..|+.|+.||.|.+||...+. ..+.... -..+.++|+|+|..+++|
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~------t~~~ka~------------~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGV------TLLAKAE------------FIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCe------eeeeeec------------ccceEEEEcCCCcEEEEE
Confidence 457789999999999 999999999999999988753 1222111 346889999999999999
Q ss_pred cC-CeEEEEeccC
Q 011257 360 DY-MTLKLWDINM 371 (490)
Q Consensus 360 ~d-~~i~iwd~~~ 371 (490)
++ |.+.+||+..
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 87 9999999975
No 309
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.43 E-value=0.0001 Score=68.71 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=138.6
Q ss_pred cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCC-----cccccccccc-----CCccccee
Q 011257 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP-----EFRYKTEFQS-----HEPEFDYL 106 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~-----h~~~~~~~ 106 (490)
.|++++|+++..-||+|...|.|.||.+..++..+ .+. ......+.+.+ ....+..... -...|.++
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~ 79 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NRE--QPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL 79 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccC--CCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence 58999999998899999999999999998765432 000 00000000000 0000000000 01123343
Q ss_pred eeee-eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEe-----
Q 011257 107 KSLE-IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM----- 180 (490)
Q Consensus 107 ~~~~-~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----- 180 (490)
.-++ ..++|++++.+ |=.+++.|..+|.+.|.|+++..+................. .+.++.|+
T Consensus 80 ~l~~~~~g~vtal~~S---~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~-------~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS---DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSS-------YVTSIEFSVMTLG 149 (395)
T ss_dssp EEE---S-SEEEEEE----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-----------EEEEEEEEEE-T
T ss_pred hheeccCCcEeEEecC---CCcEEEEEecCCcEEEEECCCCeEEeecccccccccccccc-------CeeEEEEEEEecC
Confidence 3332 24889999996 44589999999999999999988776644443101000111 11134443
Q ss_pred ccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEE-ecCC---------------
Q 011257 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD--------------- 244 (490)
Q Consensus 181 ~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~--------------- 244 (490)
.|+.. .-.+++|+..|.+.+|.++-.............. ..+.+.|..+. ++.+
T Consensus 150 ~D~yS---------Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 150 GDGYS---------SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp TSSSE---------EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred CCccc---------ceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 12210 0157899999999999864322222222222211 24445555554 3222
Q ss_pred ------CCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc-----CCCCcEEEEEeCCCeEEEEeCC
Q 011257 245 ------GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 245 ------~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
..+++.+.+..++++.....+...+.+ ........+.+- ..+ ..|++-..+|.+++|.+.
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETT
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECC
Confidence 114445577789999887555443321 111222233342 244 788889999999999998
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEec
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~ 369 (490)
.-+.+ ..+..... .....+....++++|..++-.+...+.++.+
T Consensus 291 ~Lkei----~~~~l~~~--------~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 291 SLKEI----KSVSLPPP--------LDSRRLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp T--EE----EEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred CchHh----hcccCCCc--------cccccccccEECCCCCEEEEeCcccEEEEEE
Confidence 75432 22222110 0113455677899999887765544444443
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.40 E-value=0.00046 Score=60.57 Aligned_cols=229 Identities=15% Similarity=0.097 Sum_probs=118.6
Q ss_pred cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceE--EeccCCccccccccCCCCccccCCCCCcEEEeee
Q 011257 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS--YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (490)
Q Consensus 135 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~ 212 (490)
+|+|..||..+++........... . ... ..+++. .+++++.++.+..||.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~-------------~---~~~~~~~~~~~------------~v~~~~~~~~l~~~d~ 53 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI-------------G---GPVATAVPDGG------------RVYVASGDGNLYALDA 53 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC-------------S---SEEETEEEETT------------EEEEEETTSEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCC-------------C---CccceEEEeCC------------EEEEEcCCCEEEEEEC
Confidence 688999999998877665542100 0 111 222333 5667778888888882
Q ss_pred ecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc
Q 011257 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 291 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 291 (490)
..+ +....... ...+...... .+..++.+ .++.++.+|..++....+..... ..... ........
T Consensus 54 ~tG-------~~~W~~~~--~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~ 119 (238)
T PF13360_consen 54 KTG-------KVLWRFDL--PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPA 119 (238)
T ss_dssp TTS-------EEEEEEEC--SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEE
T ss_pred CCC-------CEEEEeec--cccccceeee-cccccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCce
Confidence 111 11111100 0111110122 23444444 78899999988777665521111 00111 11122222
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCe-EEEEecc
Q 011257 292 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT-LKLWDIN 370 (490)
Q Consensus 292 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~-i~iwd~~ 370 (490)
..+ ..++.+..++.|..+|.++|+... .......+.... +. ....+..-....++..+++..++. +.+ |+.
T Consensus 120 ~~~-~~~~~~~~~g~l~~~d~~tG~~~w----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~ 191 (238)
T PF13360_consen 120 VDG-DRLYVGTSSGKLVALDPKTGKLLW----KYPVGEPRGSSP-IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLA 191 (238)
T ss_dssp EET-TEEEEEETCSEEEEEETTTTEEEE----EEESSTT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETT
T ss_pred Eec-CEEEEEeccCcEEEEecCCCcEEE----EeecCCCCCCcc-ee-eecccccceEEECCEEEEEcCCCeEEEE-ECC
Confidence 225 678888889999999999998643 222211000000 00 001122222333554444445564 566 998
Q ss_pred CCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+ ++.+-... .... ......++..|+.++.++.|..||+++|+.
T Consensus 192 t-g~~~w~~~--~~~~----------------~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 T-GEKLWSKP--ISGI----------------YSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp T-TEEEEEEC--SS-E----------------CECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred C-CCEEEEec--CCCc----------------cCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 7 55332221 1110 122456788888888999999999999976
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=8.2e-05 Score=72.39 Aligned_cols=206 Identities=9% Similarity=0.068 Sum_probs=121.9
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccc-eeEEEecCCCCEEEE-e-cCC----cEEEEEcCCCC----
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFIS-A-DDL----RINLWNLEISN---- 265 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~-~-~d~----~i~~wd~~~~~---- 265 (490)
.++.|+.+|.|.+++ .... ..+. +.++... |..+-...+..+|++ | +++ .+++|+++..+
T Consensus 37 ~vvigt~~G~V~~Ln----~s~~----~~~~-fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 37 SVVIGTADGRVVILN----SSFQ----LIRG-FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEEeeccccEEEec----ccce----eeeh-heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 789999999999876 1111 1111 1344444 444444444466666 4 444 68999997542
Q ss_pred -ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 266 -QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 266 -~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
++.....+-+........++.+++.+.+- ..+|+|-.+|.|..+.-.--+. +..+.--.+.. ..+|
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RD--rgsr~~~~~~~----------~~pI 174 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRD--RGSRQDYSHRG----------KEPI 174 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhc--cccceeeeccC----------CCCc
Confidence 23311222221233346788899999987 8999999999999885332111 11122111211 2689
Q ss_pred EEEEECCCCCE-EEEEcCCeEEEEeccCCCCc-eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 345 SDIKFARNGRH-ILSRDYMTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 345 ~~l~~sp~g~~-l~sg~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
+.+.+..+++. ++++.-..|.+|.+.. ..+ +..+..+... +.+..+++....+++++. .-|
T Consensus 175 TgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~---------------lnCss~~~~t~qfIca~~-e~l 237 (933)
T KOG2114|consen 175 TGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS---------------LNCSSFSDGTYQFICAGS-EFL 237 (933)
T ss_pred eeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc---------------ceeeecCCCCccEEEecC-ceE
Confidence 99999998887 4455557899999984 333 3335544433 236677765553554444 469
Q ss_pred EEEecCCCceeeeEec-cCCC
Q 011257 423 RVFGCSEGSAESTTLE-ASKN 442 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~-~~~~ 442 (490)
.+|+....+. ...+. +|..
T Consensus 238 ~fY~sd~~~~-cfaf~~g~kk 257 (933)
T KOG2114|consen 238 YFYDSDGRGP-CFAFEVGEKK 257 (933)
T ss_pred EEEcCCCcce-eeeecCCCeE
Confidence 9999885544 34454 5553
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=3.6e-05 Score=74.21 Aligned_cols=197 Identities=11% Similarity=0.088 Sum_probs=126.9
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
+...+.++|++++ +++||.|+-+|.|++.+.+... .+...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------------------------~~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------------------------KTNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-------------------------ccccccc-----------
Confidence 3457889999998 6799999999999999976432 1122232
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEecc--CCccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN--GGCGERN 189 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--g~~~~~~ 189 (490)
.. +.+|.++++|+.||+|.|-.+.+.+......++.+ +.+++++|+ -+.
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rp----------------iksial~Pd~~~~~---- 128 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRP----------------IKSIALHPDFSRQQ---- 128 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecCCc----------------ceeEEeccchhhhh----
Confidence 11 35789999999999999999988877666655532 227788887 111
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 269 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~ 269 (490)
...+++|+..| +.++.-.+-... .......-.++|.++.|. |+++|-++|--|++||+...... .
T Consensus 129 -----sk~fv~GG~ag-lvL~er~wlgnk------~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l-~ 193 (846)
T KOG2066|consen 129 -----SKQFVSGGMAG-LVLSERNWLGNK------DSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRL-T 193 (846)
T ss_pred -----hhheeecCcce-EEEehhhhhcCc------cceeeecCccceEEEEec--CcEEEEecCCCcEEEecccccee-e
Confidence 11678899988 777541111111 011124445789999986 67888887667999999854433 3
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
.++... ...........+.|.++. .|+.| ...+|+|..++.
T Consensus 194 ~i~~p~-~~~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 194 NIPPPS-QSVRPELFPPHLHWQDED--RLVIG-WGDSVKICSIKK 234 (846)
T ss_pred ccCCCC-CCCCcccCCCceEecCCC--eEEEe-cCCeEEEEEEec
Confidence 221111 111112233467888875 55554 555788888883
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00014 Score=70.79 Aligned_cols=233 Identities=15% Similarity=0.201 Sum_probs=135.7
Q ss_pred cccccccccccccccccccccc-cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccc
Q 011257 15 LEWKFSQVFGERTAGEEVQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (490)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~-~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (490)
..|+=-++|-.........-.+ .|+| |++.+..+|.|+.+|.|.+.+..-. ..
T Consensus 4 ~qWrrF~lFq~~~i~~~~~~~G~~isc--~~s~~~~vvigt~~G~V~~Ln~s~~------------------------~~ 57 (933)
T KOG2114|consen 4 KQWRRFSLFQWKEIPSLENFVGNAISC--CSSSTGSVVIGTADGRVVILNSSFQ------------------------LI 57 (933)
T ss_pred hhcceeeeeeeeecCCcccCCCCceeE--EcCCCceEEEeeccccEEEecccce------------------------ee
Confidence 4577666665444322111123 5555 5677889999999999998885421 23
Q ss_pred cccccCCcccceeeeeeeccc-eeEEEEeecCCCcEEEEEeCcC-----eEEEEEccCCe----EEEEeeeccCCCcCCC
Q 011257 94 TEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDK-----TIKLWKVQEKK----VKKVFDWNVHPEKAAG 163 (490)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~-V~~v~~~p~~~~~~l~~~~~dg-----~i~lwd~~~~~----~~~~~~~~~~~~~~~~ 163 (490)
..++.+. .. |..+... ....+|++.+.|+ .+++|+++.-+ ......+...+.....
T Consensus 58 ~~fqa~~------------~siv~~L~~~--~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~ 123 (933)
T KOG2114|consen 58 RGFQAYE------------QSIVQFLYIL--NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPT 123 (933)
T ss_pred ehheecc------------hhhhhHhhcc--cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCC
Confidence 5566666 33 3333332 1224677766654 58999987431 1111111110000000
Q ss_pred CCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC
Q 011257 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (490)
Q Consensus 164 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (490)
+.. ....++.+.+-+ .+++|-.+|.|..+. .+.......+..+...-..+|+.+++..
T Consensus 124 ~~~------p~s~l~Vs~~l~------------~Iv~Gf~nG~V~~~~----GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 124 NPS------PASSLAVSEDLK------------TIVCGFTNGLVICYK----GDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCC------cceEEEEEcccc------------EEEEEecCcEEEEEc----CcchhccccceeeeccCCCCceeeEEec
Confidence 111 112556666655 789999999999875 2222222222233344457899999999
Q ss_pred CCCEEEE-ecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc
Q 011257 244 DGETFIS-ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (490)
Q Consensus 244 ~~~~l~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~ 318 (490)
+++.++. +.-..|.+|.+........ .+..|...+.|..+++.. ..|++++. ..+.+||......|
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~-------~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLK-------VLDNNGISLNCSSFSDGT-YQFICAGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCccee-------eeccCCccceeeecCCCC-ccEEEecC-ceEEEEcCCCccee
Confidence 9887333 3566799999884432222 356788889999999876 54665544 46899998866544
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00012 Score=65.03 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=130.4
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|..++|+|..+ .++..++.+..|+|.|+++........... .+-+.+|..|...
T Consensus 194 ~~IrdlafSp~~~-GLl~~asl~nkiki~dlet~~~vssy~a~~----------------~~wSC~wDlde~h------- 249 (463)
T KOG1645|consen 194 SFIRDLAFSPFNE-GLLGLASLGNKIKIMDLETSCVVSSYIAYN----------------QIWSCCWDLDERH------- 249 (463)
T ss_pred hhhhhhccCcccc-ceeeeeccCceEEEEecccceeeeheeccC----------------CceeeeeccCCcc-------
Confidence 7799999998554 378889999999999999987655444331 1115677666653
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC------CCCEEEEecCCcEEEEEcCCCCc
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS------DGETFISADDLRINLWNLEISNQ 266 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~------~~~~l~~~~d~~i~~wd~~~~~~ 266 (490)
++.+|..+|.|.+|| ....+........ .-...+|..++.-+ .+.+|+.. --.+..|++.....
T Consensus 250 ----~IYaGl~nG~VlvyD-~R~~~~~~~e~~a----~~t~~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~ 319 (463)
T KOG1645|consen 250 ----VIYAGLQNGMVLVYD-MRQPEGPLMELVA----NVTINPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAE 319 (463)
T ss_pred ----eeEEeccCceEEEEE-ccCCCchHhhhhh----hhccCcceeecccCccccccccceEEee-ehhhhhhhhhcccc
Confidence 889999999999999 3333332111100 01113444444322 23333333 22245566653332
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCe---EE---E-EeCCCccccccccceeccccCCCccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IR---L-IDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~---i~---i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
....+ .-.+..+...++.+++.....|++.-.+.. ++ . -|.+.|..+.....+..+... . +-
T Consensus 320 ~~p~v-----lele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~----~--kl 388 (463)
T KOG1645|consen 320 CLPCV-----LELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQ----T--KL 388 (463)
T ss_pred CCCcc-----cccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcc----c--cc
Confidence 22110 112235566677777755345555433211 11 0 111122111000011101000 0 00
Q ss_pred cccceEEEEECCCCCEEEE-EcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc-CCC-CEEEE
Q 011257 340 IIASISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDG-GRVAT 415 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~s-g~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~-~~l~s 415 (490)
..-..+.-.++..+|+. |++ +.+.+||..+ .+.++++..... |.+++.. -++ .+|++
T Consensus 389 --~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s-~evvQ~l~~~ep----------------v~Dicp~~~n~~syLa~ 449 (463)
T KOG1645|consen 389 --STTQAIRAVEDNNYIVVVGDSTNELILQDPHS-FEVVQTLALSEP----------------VLDICPNDTNGSSYLAL 449 (463)
T ss_pred --ccccceeccccccEEEEecCCcceeEEeccch-hheeeecccCcc----------------eeecceeecCCcchhhh
Confidence 01112222346677776 444 9999999997 888888876532 2244432 233 45555
Q ss_pred eecCCeEEEEecCC
Q 011257 416 GSYSNLFRVFGCSE 429 (490)
Q Consensus 416 ~~~dg~i~vw~~~~ 429 (490)
- .|..++||..++
T Consensus 450 L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 450 L-TDDRVHIYKNES 462 (463)
T ss_pred e-ecceEEEEecCC
Confidence 4 456788887653
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=6.2e-07 Score=86.66 Aligned_cols=217 Identities=14% Similarity=0.246 Sum_probs=136.2
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|...-+|++|+-+.++|+.|+-.|.|+++++.++.. .....+|.
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------------e~s~ncH~----------- 1143 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------------EESVNCHQ----------- 1143 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------------cccccccc-----------
Confidence 35778899999999999999999999999999998873 35567887
Q ss_pred ccceeEEEEeecCCCcEEEEEeCc-C-eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTND-K-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~d-g-~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
.+|+-+.=+ .+|..+++.+.- . -..+|++..--
T Consensus 1144 -SavT~vePs--~dgs~~Ltsss~S~PlsaLW~~~s~~------------------------------------------ 1178 (1516)
T KOG1832|consen 1144 -SAVTLVEPS--VDGSTQLTSSSSSSPLSALWDASSTG------------------------------------------ 1178 (1516)
T ss_pred -ccccccccc--CCcceeeeeccccCchHHHhcccccc------------------------------------------
Confidence 778877654 466666664332 2 45677765310
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
.....+ ..-.++.|+.....-+.| ......+||+++...+.
T Consensus 1179 ---------------------------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1179 ---------------------------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred ---------------------------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence 000011 122345566554444444 44567889998766554
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
..+.. ..+..-.=.++.|+|+. .+++ .|| .+||.+..+. ++.|.... . -..-.
T Consensus 1221 tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft------------~-~~~G~ 1273 (1516)
T KOG1832|consen 1221 TYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFT------------D-YGGGG 1273 (1516)
T ss_pred HhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhe------------e-ccccc
Confidence 32211 01112222678899998 6665 566 5799998754 34454332 1 12235
Q ss_pred ECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 011257 349 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (490)
Q Consensus 349 ~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 414 (490)
|+|.|..++.-+. |||+++ -+.++....-... .+.|...|..+.
T Consensus 1274 FHP~g~eVIINSE----IwD~RT-F~lLh~VP~Ldqc-----------------~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1274 FHPSGNEVIINSE----IWDMRT-FKLLHSVPSLDQC-----------------AVTFNSTGDVMY 1317 (1516)
T ss_pred ccCCCceEEeech----hhhhHH-HHHHhcCccccce-----------------EEEeccCccchh
Confidence 9999999888664 899997 6666655443322 566776666544
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=3.8e-05 Score=74.02 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=118.3
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
....+++.|+.+|.+.+++ .+... ++ ...|+.. .-+|+++++| .||.|.+-.+-+.+....
T Consensus 47 v~~~~~~~GtH~g~v~~~~----~~~~~-----~~-~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~-- 108 (846)
T KOG2066|consen 47 VHDKFFALGTHRGAVYLTT----CQGNP-----KT-NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ-- 108 (846)
T ss_pred hhcceeeeccccceEEEEe----cCCcc-----cc-ccccccc------ccCCceEEEecCCCcEEEeeccCCcccee--
Confidence 3444889999999999987 11111 00 1222222 5679999999 899999998885554422
Q ss_pred ecCCCccCCCCCceEEEEEcCC----CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 272 DVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
.....++.+++++|+ ..+.+++|+.-| +.++.-+--.. ......+ .-.++|.++
T Consensus 109 -------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn----k~~v~l~----------~~eG~I~~i 166 (846)
T KOG2066|consen 109 -------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN----KDSVVLS----------EGEGPIHSI 166 (846)
T ss_pred -------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC----ccceeee----------cCccceEEE
Confidence 123677899999998 236899999999 77765332110 0111112 123789999
Q ss_pred EECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 348 ~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
+|. |.++|-++|--|++||+.. .+.+..++......+.- .+ -..+.|.++.++++ |+.-+|+|..+
T Consensus 167 ~W~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R~e--------~f-pphl~W~~~~~LVI--GW~d~v~i~~I 232 (846)
T KOG2066|consen 167 KWR--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVRPE--------LF-PPHLHWQDEDRLVI--GWGDSVKICSI 232 (846)
T ss_pred Eec--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCCcc--------cC-CCceEecCCCeEEE--ecCCeEEEEEE
Confidence 997 8899999987889999987 66666555444322111 11 01688987766554 45557888888
Q ss_pred C
Q 011257 428 S 428 (490)
Q Consensus 428 ~ 428 (490)
+
T Consensus 233 ~ 233 (846)
T KOG2066|consen 233 K 233 (846)
T ss_pred e
Confidence 7
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.1e-06 Score=85.09 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=98.5
Q ss_pred cccccceeEEEecCCCCEEEEe--c-CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCe
Q 011257 230 HAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 306 (490)
.+|...|+-+.-+.+|..+++. . .-...+|++.......+. + ..-.++.|+... ..-+.|+....
T Consensus 1140 ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs-------f----~ed~~vkFsn~~-q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1140 NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS-------F----DEDKAVKFSNSL-QFRALGTEADD 1207 (1516)
T ss_pred cccccccccccccCCcceeeeeccccCchHHHhccccccCcccc-------c----cccceeehhhhH-HHHHhcccccc
Confidence 6788888888888888888775 2 335679998754433321 1 223578888764 44455555567
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccc
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
..+||+.++..+.+.+....+.. ..-+...|+|+..+++- || .+||++. .+.++.+..-....
T Consensus 1208 a~~YDvqT~~~l~tylt~~~~~~------------y~~n~a~FsP~D~LIln--dG--vLWDvR~-~~aIh~FD~ft~~~ 1270 (1516)
T KOG1832|consen 1208 ALLYDVQTCSPLQTYLTDTVTSS------------YSNNLAHFSPCDTLILN--DG--VLWDVRI-PEAIHRFDQFTDYG 1270 (1516)
T ss_pred eEEEecccCcHHHHhcCcchhhh------------hhccccccCCCcceEee--Cc--eeeeecc-HHHHhhhhhheecc
Confidence 89999999876532221111111 22367889998877653 23 4899997 56666554433211
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.-.|+|.|.-++.-++ |||+++-+.
T Consensus 1271 ----------------~G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1271 ----------------GGGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred ----------------cccccCCCceEEeech-----hhhhHHHHH
Confidence 4469999998887665 899887543
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.23 E-value=1.3e-05 Score=74.95 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=70.6
Q ss_pred cccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc
Q 011257 17 WKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (490)
Q Consensus 17 w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 96 (490)
+...+-..++.....+.....|.|++++|+.+.|+.|..||.|.+||...+.. .+
T Consensus 241 YE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-------------------------~~ 295 (545)
T PF11768_consen 241 YECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-------------------------LL 295 (545)
T ss_pred EEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-------------------------ee
Confidence 44444333455556778899999999999999999999999999999865431 11
Q ss_pred ccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE
Q 011257 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV 148 (490)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~ 148 (490)
.-.. -..+.++|+| +|..+++|+..|.+.+||+.-..+
T Consensus 296 ~ka~------------~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 296 AKAE------------FIPTLIAWHP--DGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred eeec------------ccceEEEEcC--CCcEEEEEcCCceEEEEEeecCcc
Confidence 1111 3367899997 677999999999999999986544
No 319
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.0012 Score=57.20 Aligned_cols=219 Identities=11% Similarity=0.121 Sum_probs=112.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+..++|.|+. +.++++....+.|.-.+.+ +++.....+... .-+-.+++..++.
T Consensus 22 ~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~--------------~D~EgI~y~g~~~-------- 77 (248)
T PF06977_consen 22 DELSGLTYNPDT-GTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF--------------GDYEGITYLGNGR-------- 77 (248)
T ss_dssp S-EEEEEEETTT-TEEEEEETTTTEEEEEETT---EEEEEE-SS---------------SSEEEEEE-STTE--------
T ss_pred CCccccEEcCCC-CeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC--------------CCceeEEEECCCE--------
Confidence 559999999843 4677778888999888875 555554444321 1111567776666
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccc--eeeeec-cccccceeEEEecCCCCEEEEe-cCCcEEEEEcCC--CCc
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAG--CRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQ 266 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~--~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~--~~~ 266 (490)
++++...++.+.++++........... ...... ..+...+-.++|++.++.|+.+ +..-..+|.+.. ...
T Consensus 78 ----~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 78 ----YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp ----EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred ----EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc
Confidence 667667788888877322222111111 111111 2345668899999998888887 666666776653 121
Q ss_pred eeeeeecCC-CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 267 SFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 267 ~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
......... .........+.+++++|....+++....+..|..+| .+|+... ...+..... -+.......-
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~--~~~L~~g~~-----gl~~~~~QpE 225 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVS--SLSLDRGFH-----GLSKDIPQPE 225 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEE--EEE-STTGG-----G-SS---SEE
T ss_pred ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEE--EEEeCCccc-----CcccccCCcc
Confidence 211111100 011223455789999998767888888899999999 4554321 112211000 0000113467
Q ss_pred EEEECCCCCEEEEEcCCeEEEE
Q 011257 346 DIKFARNGRHILSRDYMTLKLW 367 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~d~~i~iw 367 (490)
.|+|.++|++.+++.-+..++|
T Consensus 226 GIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 226 GIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEE-TT--EEEEETTTEEEEE
T ss_pred EEEECCCCCEEEEcCCceEEEe
Confidence 8999999988888766666654
No 320
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.18 E-value=5e-06 Score=77.84 Aligned_cols=291 Identities=13% Similarity=0.089 Sum_probs=157.3
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+.|+++.-..+...+++|..+|.|.+-.++...-..... +......+.+++|++-...
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~-------------tp~~ar~Ct~lAwneLDtn------- 116 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV-------------TPGYARPCTSLAWNELDTN------- 116 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee-------------cccccccccccccccccHH-------
Confidence 44677777654444577889999999988877543221000 0011134457777765332
Q ss_pred CCCCccccCC----CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 193 ASNDSSFPPG----GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 193 ~~~~~l~~~~----~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
.|++|- .|..+.|||+........... .+..+......+++|..+.+++.+| ....+.++|++.....
T Consensus 117 ----~LAagldkhrnds~~~Iwdi~s~ltvPke~~---~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~ 189 (783)
T KOG1008|consen 117 ----HLAAGLDKHRNDSSLKIWDINSLLTVPKESP---LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS 189 (783)
T ss_pred ----HHHhhhhhhcccCCccceecccccCCCcccc---ccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence 566553 467899999543322111111 1111223455688999899999999 7889999999844322
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC-CCccccccccceeccccCCCccccccccccceEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
... -.+..+..+...|-.+.++++- .||.|-+||. +. ...++..+...+.+.+ ..+..
T Consensus 190 ~~s---------vnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rn---ienpl~~i~~~~N~~~--------~~l~~ 248 (783)
T KOG1008|consen 190 VSS---------VNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRN---IENPLQIILRNENKKP--------KQLFA 248 (783)
T ss_pred hhh---------hhhhhcccceecCCCCCceecc-ccCceeeccchhh---hccHHHHHhhCCCCcc--------cceee
Confidence 211 1234567778888443677654 4999999994 33 2333444433332111 35889
Q ss_pred EEECCCCCE-EEE-EcC-CeEEEEeccCCCCceeeeeeecc-ccccccccccCCCccceeeEEEcCCCC--EEEEeecCC
Q 011257 347 IKFARNGRH-ILS-RDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSN 420 (490)
Q Consensus 347 l~~sp~g~~-l~s-g~d-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~s~~~dg 420 (490)
++|+|...- +++ ..| ++|+++|+...+.....-..+.. ...+. .+.+.+....|....|++... ...++...-
T Consensus 249 ~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~-~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl 327 (783)
T KOG1008|consen 249 LAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKY-PVQPNSQCSGIDFFTWHTASPTERQILGVINL 327 (783)
T ss_pred EEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccc-cccccccccceeecCcCcCCccceeEEeeccC
Confidence 999995433 333 345 99999998641111000000000 00000 011112122355777877552 233444444
Q ss_pred eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
.+.-+++. ...+..|.+|.+.+.|+-..+...
T Consensus 328 ~~~Df~V~-----e~~~pa~s~p~n~L~~s~~r~ly~ 359 (783)
T KOG1008|consen 328 QPKDFSVH-----EEVIPASSNPYNDLIFSFKRKLYP 359 (783)
T ss_pred Chhhccch-----hheecccCCCcccchhhhcccccC
Confidence 45555544 124455666888888876554433
No 321
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.15 E-value=0.0011 Score=62.94 Aligned_cols=229 Identities=10% Similarity=0.054 Sum_probs=114.5
Q ss_pred CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 126 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
+..++.++.+|.+.-+|..+++.......... +. . .... .++.++.+..++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~---s---sP~v--------------~~~~v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE---------AL---S---RPVV--------------SDGLVLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc---------ee---c---CCEE--------------ECCEEEEECCCC
Confidence 45777888899999999999886654443211 00 0 0000 112455566677
Q ss_pred cEEEeeeecccccccccceeeee-----ccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIY-----AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 279 (490)
.+..+|...+. ..+..... ..+...++ . .+..++.+ .++.+..+|..++....+.--..+. .
T Consensus 171 ~l~ald~~tG~----~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~--~ 238 (394)
T PRK11138 171 MLQALNESDGA----VKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT--G 238 (394)
T ss_pred EEEEEEccCCC----EeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCC--C
Confidence 77776621111 11100000 00001111 1 12234455 7888888888765544321000000 0
Q ss_pred CCC-CceEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEE
Q 011257 280 DLT-EVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (490)
Q Consensus 280 ~~~-~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 356 (490)
.+. .....+..+| .+ ..++.++.+|.+..+|..+++..++. .+ .....+... +++.+
T Consensus 239 ~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~--~~----------------~~~~~~~~~-~~~vy 298 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR--EY----------------GSVNDFAVD-GGRIY 298 (394)
T ss_pred ccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee--cC----------------CCccCcEEE-CCEEE
Confidence 000 0011111122 23 46667778999999999998754321 11 011112221 33334
Q ss_pred EEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 357 LSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 357 ~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+...++.+..+|..+ ++.+-......... ..+... .+..|+.++.||.|++.|..+|+.
T Consensus 299 ~~~~~g~l~ald~~t-G~~~W~~~~~~~~~--------------~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 299 LVDQNDRVYALDTRG-GVELWSQSDLLHRL--------------LTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEcCCCeEEEEECCC-CcEEEcccccCCCc--------------ccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 444569999999986 65433221111000 002222 245677889999999999999976
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=4.7e-05 Score=71.65 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=109.8
Q ss_pred cceeEEEecCCCCEEEEe--c-C--CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCe--
Q 011257 234 YHINSISNNSDGETFISA--D-D--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-- 306 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-- 306 (490)
..+..-+|+|+++.++.- . . ..+.++++..+.... +. .+.++ -...+|+|||.+++.+...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~-----~~~g~---~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-IL-----NFNGN---NGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-ee-----ccCCc---cCCccCCCCCCEEEEEECCCCCcc
Confidence 445567899999887763 2 2 358999998554432 22 23333 3457899999555666666775
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC--CeEEEEeccCCCCceeeeeeecc
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d--~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
|.++|+..+.. ..+.... +.-..=.|+|||++|+-.+| |.-.||-++.++.....+.....
T Consensus 264 iy~~dl~~~~~-----~~Lt~~~------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 264 IYLMDLDGKNL-----PRLTNGF------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred EEEEcCCCCcc-----eecccCC------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence 56667776542 1122211 22235679999999998765 66566655544555555544333
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeec-CCe--EEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
.. ..-.|+|||++|+..+. +|. |.+.++.++.. .+.+. .........|.|++.+....+
T Consensus 327 ~~---------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 327 GN---------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CC---------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEec
Confidence 21 14579999999987774 344 77777776653 23332 223334456666666555443
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.14 E-value=0.0017 Score=60.65 Aligned_cols=313 Identities=12% Similarity=0.111 Sum_probs=148.1
Q ss_pred CCCCCEEEEec---------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 44 DKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 44 s~dg~~latg~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
|||+++++... ..+.+.|||+.+++. ..+.... ..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~------------------------~~l~~~~------------~~ 44 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI------------------------TPLTPPP------------PK 44 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE------------------------EESS-EE------------TT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce------------------------EECcCCc------------cc
Confidence 68898887743 245788899887652 1111112 55
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCC---cccc--ccccCceEEeccCCccccc
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP---IFGS--HVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~s~~g~~~~~~ 189 (490)
+....|+| +|+.++... ++.|.+++..++...++..-. .....+|. ++.. ......+-|||||+.
T Consensus 45 ~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~---- 114 (353)
T PF00930_consen 45 LQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQETQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY---- 114 (353)
T ss_dssp BSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEEEESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE----
T ss_pred cccceeec--CCCeeEEEe-cCceEEEECCCCCeEEecccc---ceeEEcCccceeccccccccccceEECCCCCE----
Confidence 78899998 466776665 678999999888555443322 11111111 1111 112347889999994
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 269 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~ 269 (490)
+++..-.+..|+.+.+..-..... .-..+..+.+-.-|..-. .-.+.++|+.+.... .
T Consensus 115 -------la~~~~d~~~v~~~~~~~~~~~~~-----------~yp~~~~~~YPk~G~~np---~v~l~v~~~~~~~~~-~ 172 (353)
T PF00930_consen 115 -------LAFLRFDEREVPEYPLPDYSPPDS-----------QYPEVESIRYPKAGDPNP---RVSLFVVDLASGKTT-E 172 (353)
T ss_dssp -------EEEEEEE-TTS-EEEEEEESSSTE-----------SS-EEEEEE--BTTS------EEEEEEEESSSTCCC-E
T ss_pred -------EEEEEECCcCCceEEeeccCCccc-----------cCCcccccccCCCCCcCC---ceEEEEEECCCCcEE-E
Confidence 223333344444443111110000 001223333322221110 113556787644332 1
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEe--CC---CeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+ +.. .........+..+.|.+++ ..|+..- .+ -.+.++|..++.... ....... +-...-
T Consensus 173 ~-~~~-~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~----~~~e~~~--------~Wv~~~ 237 (353)
T PF00930_consen 173 L-DPP-NSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRV----VLEETSD--------GWVDVY 237 (353)
T ss_dssp E-----HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEE----EEEEESS--------SSSSSS
T ss_pred e-eec-cccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeE----EEEecCC--------cceeee
Confidence 1 000 0112346678899999998 6343332 22 246677777654321 1111110 000122
Q ss_pred EEEEEC-CCCCEEEE-E-cC--CeEEEEeccCCCCceeeeeeeccccccccccccCCCcccee-eEEEcCCCCEEE-Eee
Q 011257 345 SDIKFA-RNGRHILS-R-DY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVA-TGS 417 (490)
Q Consensus 345 ~~l~~s-p~g~~l~s-g-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~-s~~ 417 (490)
....|. +++..++- . .+ ..|.+++.. +.....+....-. |. -+.|+++++.|. ++.
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~G~~~---------------V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTSGDWE---------------VTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS-SSS----------------EEEEEEEECTSSEEEEEES
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceeccccCcee---------------ecccceEcCCCCEEEEEec
Confidence 345554 66665554 3 33 566666665 3433333322221 32 367888877654 444
Q ss_pred cC----CeEEEEecC-CCceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 418 YS----NLFRVFGCS-EGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 418 ~d----g~i~vw~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
.+ ..|..-++. .++. ..+.........+.|||+++....
T Consensus 301 ~~~p~~r~lY~v~~~~~~~~--~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 301 GDNPGERHLYRVSLDSGGEP--KCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp SGGTTSBEEEEEETTETTEE--EESSTTSSTTEEEEE-TTSSEEEE
T ss_pred CCCCCceEEEEEEeCCCCCe--EeccCCCCCceEEEECCCCCEEEE
Confidence 32 245555666 4433 455444433369999999886553
No 324
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.11 E-value=0.0029 Score=60.11 Aligned_cols=137 Identities=9% Similarity=0.005 Sum_probs=77.4
Q ss_pred CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccc
Q 011257 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (490)
Q Consensus 245 ~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (490)
+..++.+ .++.+..+|..+++...+. .+. ....+.. .+ ..++.++.+|.+..+|..+++...+...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 3344444 7899999999866554332 111 1112222 33 4677788999999999998875432100
Q ss_pred eeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceee
Q 011257 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
+.. ....+.... ++..++...+|.+.+.|..+ ++.+...+....... ..
T Consensus 323 -~~~--------------~~~~sp~v~-~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s~ 371 (394)
T PRK11138 323 -LLH--------------RLLTAPVLY-NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------SE 371 (394)
T ss_pred -cCC--------------CcccCCEEE-CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------eC
Confidence 000 011111121 44444444569999999987 877766654322110 01
Q ss_pred EEEcCCCCEEEEeecCCeEEEEec
Q 011257 404 CCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
..+ .+..|+.++.||.|+.+++
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2446788899999888764
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.05 E-value=0.00094 Score=67.90 Aligned_cols=269 Identities=12% Similarity=0.061 Sum_probs=140.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.++.|.. +...++.+..+|.|.+-|..+......-... ....+++|+||++
T Consensus 69 ~~i~s~~fl~--d~~~i~v~~~~G~iilvd~et~~~eivg~vd----------------~GI~aaswS~Dee-------- 122 (1265)
T KOG1920|consen 69 DEIVSVQFLA--DTNSICVITALGDIILVDPETLELEIVGNVD----------------NGISAASWSPDEE-------- 122 (1265)
T ss_pred cceEEEEEec--ccceEEEEecCCcEEEEcccccceeeeeecc----------------CceEEEeecCCCc--------
Confidence 4689999984 5568888889999999988877654433322 1222789999999
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceee-e-
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-I- 270 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~-~- 270 (490)
.++..+..+++.+-. .+.....+ .+. ...-.+.++.+-.|....=.-+.-..+++... .
T Consensus 123 ----~l~liT~~~tll~mT----~~f~~i~E----------~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~ 183 (1265)
T KOG1920|consen 123 ----LLALITGRQTLLFMT----KDFEPIAE----------KPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKI 183 (1265)
T ss_pred ----EEEEEeCCcEEEEEe----ccccchhc----------ccc-ccccccccccceecccccceeeecchhhhcccccc
Confidence 566666666666532 11000000 000 11112223333333111000111110100000 0
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEe----CC-CeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----SK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
...+........+.=+.|.|--|| .+||+.. .+ +.|++||-. +.+. ...... .+--.
T Consensus 184 ~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drE-g~Ln-----s~se~~-----------~~l~~ 245 (1265)
T KOG1920|consen 184 EKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKIRVYDRE-GALN-----STSEPV-----------EGLQH 245 (1265)
T ss_pred cccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeEEEeccc-chhh-----cccCcc-----------ccccc
Confidence 000000000112223578999999 8888842 23 789999977 4321 111111 02346
Q ss_pred EEEECCCCCEEEEE----cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEE---eec
Q 011257 346 DIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT---GSY 418 (490)
Q Consensus 346 ~l~~sp~g~~l~sg----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s---~~~ 418 (490)
+++|-|.|..+++- +++.|.+|..+ |-.-..+...... ... +|..++|+.++..||+ ...
T Consensus 246 ~LsWkPsgs~iA~iq~~~sd~~IvffErN--GL~hg~f~l~~p~--------de~---~ve~L~Wns~sdiLAv~~~~~e 312 (1265)
T KOG1920|consen 246 SLSWKPSGSLIAAIQCKTSDSDIVFFERN--GLRHGEFVLPFPL--------DEK---EVEELAWNSNSDILAVVTSNLE 312 (1265)
T ss_pred ceeecCCCCeEeeeeecCCCCcEEEEecC--CccccccccCCcc--------ccc---chheeeecCCCCceeeeecccc
Confidence 79999999999982 45889999875 3222212111110 000 1348999999999987 444
Q ss_pred CCeEEEEecCCCcee-eeEeccCCCceEEEEEccCCCCCCCC
Q 011257 419 SNLFRVFGCSEGSAE-STTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 419 dg~i~vw~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
...|++|-..+-.-- -+.+....... +.|+|-.+..+..
T Consensus 313 ~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v 352 (1265)
T KOG1920|consen 313 NSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHV 352 (1265)
T ss_pred cceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEE
Confidence 556999998764311 12333333222 6777755544433
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.01 E-value=0.00016 Score=70.87 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=120.9
Q ss_pred CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 126 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
+..++.|+....+..+|+.+.+..+........ ..-.-.+++ ++++|...|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-----------------v~imR~Nnr------------~lf~G~t~G 197 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-----------------VTIMRYNNR------------NLFCGDTRG 197 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCc-----------------eEEEEecCc------------EEEeecccc
Confidence 446777877778888999988776655544210 111223334 899999999
Q ss_pred cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--c--------CCcEEEEEcCCCCceeeeeecCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~--------d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
+|.+-| ....+..+++ .+|++.+.++ +-.|+.|+++ + |..|++||++.-.....
T Consensus 198 ~V~LrD-------~~s~~~iht~-~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P------ 261 (1118)
T KOG1275|consen 198 TVFLRD-------PNSFETIHTF-DAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP------ 261 (1118)
T ss_pred eEEeec-------CCcCceeeee-eccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCC------
Confidence 999977 2223344454 8999988765 4568888874 2 45689999985443211
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCE
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 355 (490)
..+ +.+ ..-+.|+|.-...++.++..|...+-|..+-..- +...+..+. -...+..+++|++|..
T Consensus 262 I~~--~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p----------~~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 262 IQF--PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNP----------NGSGISAFDISSNGDA 326 (1118)
T ss_pred ccc--ccC-chhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEcc----------CCCcceeEEecCCCce
Confidence 112 222 2567889987788999999999999884331100 011111111 1145899999999999
Q ss_pred EEEEc-CCeEEEEec
Q 011257 356 ILSRD-YMTLKLWDI 369 (490)
Q Consensus 356 l~sg~-d~~i~iwd~ 369 (490)
++.|+ +|.|.+|.-
T Consensus 327 lafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 327 LAFGDHEGHVNLWAD 341 (1118)
T ss_pred EEEecccCcEeeecC
Confidence 99996 599999983
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00082 Score=65.61 Aligned_cols=195 Identities=12% Similarity=0.140 Sum_probs=110.5
Q ss_pred cccE-EEEEECCCCCEEEEec----CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 35 VDII-SAIEFDKSGDHLATGD----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 35 ~~~V-~~~~~s~dg~~latg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.+.| +-.+|+|...++|+++ ..|.|.||-- +++.. - -.+..
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-------------------r--~Vt~P------------ 59 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-------------------R--DVTYP------------ 59 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-------------------c--ccccc------------
Confidence 3444 4468999999999886 5688999863 33310 0 01112
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
-.+++++|+|.. -.|+.|-.-|.+.+|...+.+.......+. .....+.||++|.
T Consensus 60 ---~hatSLCWHpe~--~vLa~gwe~g~~~v~~~~~~e~htv~~th~---------------a~i~~l~wS~~G~----- 114 (1416)
T KOG3617|consen 60 ---VHATSLCWHPEE--FVLAQGWEMGVSDVQKTNTTETHTVVETHP---------------APIQGLDWSHDGT----- 114 (1416)
T ss_pred ---eehhhhccChHH--HHHhhccccceeEEEecCCceeeeeccCCC---------------CCceeEEecCCCC-----
Confidence 226779999833 366777788999999988776554433322 1122789999999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-------EEEEecCCcEE-EEEc
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-------TFISADDLRIN-LWNL 261 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~d~~i~-~wd~ 261 (490)
.++++..-|.+.+|......+..... ..+.. .+..-...+..+++++. .-++|++..+- .++.
T Consensus 115 -------~l~t~d~~g~v~lwr~d~~g~~q~~~-~~~he-l~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnw 185 (1416)
T KOG3617|consen 115 -------VLMTLDNPGSVHLWRYDVIGEIQTSN-IMQHE-LNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNW 185 (1416)
T ss_pred -------eEEEcCCCceeEEEEeeeccccccch-hhhhH-hhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccC
Confidence 79999999999999832221111100 00000 01111234555666632 22334433332 4443
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
+...... -..|. =.|+| ..|+.++.+|+|+..|-..
T Consensus 186 k~~~a~r---------s~~ks-------gv~~g-~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 186 KESLAER---------SDEKS-------GVPKG-TEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred ccchhhc---------ccccc-------CCCCC-cEEEEEcCCceEEEEcCCC
Confidence 3111000 01111 14777 8899999999998887543
No 328
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.93 E-value=0.0059 Score=59.19 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=68.7
Q ss_pred ecCCCCEEEEecCCcEEEEEcCC----CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc
Q 011257 241 NNSDGETFISADDLRINLWNLEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 241 ~~~~~~~l~~~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (490)
+.++|++... .++.|.+.|..+ .......+ .-......++++|||..+++++..+.++.++|+.+.+
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI--------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV--------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE--------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 3456776555 467799999885 22333322 1245568899999995555666669999999998754
Q ss_pred ccccccceeccccCCCccccc-cccccceEEEEECCCCCEEEEE-cCCeEEEEeccC
Q 011257 317 LCDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (490)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~ 371 (490)
.. |...-.+.....- ..-...-...+|+++|....+- -|..|..|++..
T Consensus 355 ~~------~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 355 DL------FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hh------hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 21 1110000000000 0000223567899998755554 478999999874
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0012 Score=62.55 Aligned_cols=173 Identities=12% Similarity=0.047 Sum_probs=98.4
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
..+..+.++|+|+.++.+.+|.-.++........ ..+.-..++|.+.+ .+|+-..+++|.++.--
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN--RYAVLESSSTIKIYKNF 97 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEETT
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-------------ccCceeEEEEecCc--cEEEEECCCeEEEEEcC
Confidence 4568999999999999998898888884322111 12344578899854 68888888999996322
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (490)
+.+. .+.+... ..+..+-- |.+|...+++.|.+||+.+ ++.+..+....
T Consensus 98 ~~~~----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~---------- 146 (443)
T PF04053_consen 98 KNEV----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA---------- 146 (443)
T ss_dssp EE-T----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E----------
T ss_pred cccc----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC----------
Confidence 2221 1223221 12333322 8888887777999999997 88888887553
Q ss_pred cCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC----------ceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG----------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 394 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~----------~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
|..+.|+++|.+++..+.+ .+.|++.+.. +..+..+..-...|.+.+|..| ....++..
T Consensus 147 -------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~ 215 (443)
T PF04053_consen 147 -------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN 215 (443)
T ss_dssp --------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT
T ss_pred -------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC
Confidence 2389999999999988865 5777776533 0012344333567888888876 44444433
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.85 E-value=0.0033 Score=58.80 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=99.3
Q ss_pred cccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCC-ccCCCCCceEEEEEcC---CC----CcEEEE
Q 011257 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP---TH----CNMLAY 300 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p---~~----~~~l~~ 300 (490)
....+.|++++.+.-| ++|.| ++|.+.+.|++...-.++ ..+... .-......++++.|.. .+ .-.+++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 5557899999997544 88888 899999999984443333 222210 1122356688888862 11 146888
Q ss_pred EeCCCeEEEEeCCC-ccccccccceeccccCCCccccccccccceEEEE-ECCC---------------------CCEEE
Q 011257 301 SSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL 357 (490)
Q Consensus 301 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~-~sp~---------------------g~~l~ 357 (490)
|+..|.+.+|.+.- .... ....+.... ..+.++|..+. |+.+ ..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~--f~v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGR--FSVQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EETTSEEEEEEEEE-GGG---EEEEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EeCCCCEEEEEEecCCCCc--eEEEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 99999999998752 1100 001111110 01113333333 2111 12666
Q ss_pred EEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE-----cCCCCEEEEeecCCeEEEEecCCCce
Q 011257 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 358 sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
++++..++++..-+ .+........... ...+++ ...+..|++-..+|.|++|.+..-+.
T Consensus 231 vvSe~~irv~~~~~-~k~~~K~~~~~~~---------------~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPK-SKGAHKSFDDPFL---------------CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT----EEEEE-SS-EE---------------EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEcccceEEEeCCC-Ccccceeeccccc---------------cceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 77788999999876 4444333211111 113344 23566788888999999999997765
Q ss_pred eeeEeccCC----CceEEEEEccCCCCCCCC
Q 011257 433 ESTTLEASK----NPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 433 ~~~~~~~~~----~~v~~~~~sp~~~~~~~~ 459 (490)
+.....+. ..+....++++|......
T Consensus 295 -i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 295 -IKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp -EEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred -hhcccCCCccccccccccEECCCCCEEEEe
Confidence 33333321 234456667777654433
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.84 E-value=0.00029 Score=69.12 Aligned_cols=143 Identities=11% Similarity=0.122 Sum_probs=95.5
Q ss_pred CCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC---------CCeEEEEeC
Q 011257 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDM 312 (490)
Q Consensus 243 ~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------dg~i~iwd~ 312 (490)
.+++.+.+| ..|+|.+-|.++.. ..+ ++..|++.|..+.. .| ++|++++. |.-|++||+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~-~ih-------t~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFE-TIH-------TFDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCc-eee-------eeeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhh
Confidence 456788888 79999999998443 333 46889998877665 45 78888876 445789999
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCC--CCEEEEEcCCeEEEEeccCCCCc-eeeeeeeccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDYMTLKLWDINMDSGP-VATFQVHEHLRPKL 389 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~--g~~l~sg~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~ 389 (490)
|.-+.+ ..+.-+. + -.-+.|+|. .+..++.+.|...+-|...-+.+ ...+..+....
T Consensus 254 Rmmral----~PI~~~~------------~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s--- 313 (1118)
T KOG1275|consen 254 RMMRAL----SPIQFPY------------G-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS--- 313 (1118)
T ss_pred hhhhcc----CCccccc------------C-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC---
Confidence 985432 2222222 1 134667773 34444555699999994322222 33333232211
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
.+..+++|++++.+|.|..+|.|.+|.
T Consensus 314 ----------~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 ----------GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ----------cceeEEecCCCceEEEecccCcEeeec
Confidence 145899999999999999999999998
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00032 Score=67.00 Aligned_cols=121 Identities=10% Similarity=0.131 Sum_probs=87.3
Q ss_pred ccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
...|.--+++..+++++.| +-|.+++|+...+..... ...+....+.....+++. .++|.|+..|.|.++.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQ 104 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------cccCccceEEEEEecchh-HhhhhhcCCceEEeeh
Confidence 3445555677889999999 899999999874433221 233345566677788888 8999999999999998
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccC
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~ 371 (490)
+...... . ...+.. . -+.|...|++++|++|+..+++|++ |+|.+-.++.
T Consensus 105 l~~~~p~-~-~~~~t~-~-------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELPR-D-LDYVTP-C-------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCCC-c-ceeecc-c-------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8874321 1 111111 1 1226689999999999999999977 9999888875
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.83 E-value=0.021 Score=51.18 Aligned_cols=265 Identities=9% Similarity=0.041 Sum_probs=133.2
Q ss_pred EEEeecCCCcEEEEE----------eCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 118 IRWCQSANSALYLLS----------TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 118 v~~~p~~~~~~l~~~----------~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
+..+| +++.++++ -+.-.|.+||..+-.......++..+. .........++++.||+..
T Consensus 41 ~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R--------~~~~~~~~~~~ls~dgk~~- 109 (342)
T PF06433_consen 41 VALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR--------AQVVPYKNMFALSADGKFL- 109 (342)
T ss_dssp EEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----------BS--GGGEEE-TTSSEE-
T ss_pred eeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch--------heecccccceEEccCCcEE-
Confidence 44554 55566654 334579999999988777666664211 0011122366788888842
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCce
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~ 267 (490)
++.-.+-..+|.|-| +...+ ..... ....+..+--+....+...|.||.+....+...++.
T Consensus 110 ---------~V~N~TPa~SVtVVD-l~~~k------vv~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 110 ---------YVQNFTPATSVTVVD-LAAKK------VVGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp ---------EEEEESSSEEEEEEE-TTTTE------EEEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ---------EEEccCCCCeEEEEE-CCCCc------eeeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 222334455666666 11111 11111 001111121122333444468888888888755544
Q ss_pred eeeeecCCCccCCCCCce-EEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 268 FNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
.+.. . ..+.....++ ..-++...+ ..++.-+.+|.|+--|+....... ...+..-....... .--.+.-.-
T Consensus 171 ~~~~-t--~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~~--~WrPGG~Q~ 242 (342)
T PF06433_consen 171 AQKS-T--KVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKAD--GWRPGGWQL 242 (342)
T ss_dssp EEEE-E--EESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHHT--TEEE-SSS-
T ss_pred eEee-c--cccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCcccccc--CcCCcceee
Confidence 3221 0 1122222222 233455554 567768899999998887654211 11111100000000 001133445
Q ss_pred EEECCCCCEEEE----Ec-----C--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-EEE
Q 011257 347 IKFARNGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVA 414 (490)
Q Consensus 347 l~~sp~g~~l~s----g~-----d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 414 (490)
+++++....|+. |. + ..|-++|+.+ ++.+..+..... +.+++.+.|.+ +|+
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~----------------~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHP----------------IDSIAVSQDDKPLLY 305 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEE----------------ESEEEEESSSS-EEE
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCc----------------cceEEEccCCCcEEE
Confidence 777765444433 21 2 3577778887 788888875433 23889998776 555
Q ss_pred Eee-cCCeEEEEecCCCceeeeEec
Q 011257 415 TGS-YSNLFRVFGCSEGSAESTTLE 438 (490)
Q Consensus 415 s~~-~dg~i~vw~~~~~~~~~~~~~ 438 (490)
+.+ .++.+.+||..+|+. +..++
T Consensus 306 ~~~~~~~~l~v~D~~tGk~-~~~~~ 329 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKL-VRSIE 329 (342)
T ss_dssp EEETTTTEEEEEETTT--E-EEEE-
T ss_pred EEcCCCCeEEEEeCcCCcE-Eeehh
Confidence 444 579999999999987 45554
No 334
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.80 E-value=0.019 Score=53.71 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=57.7
Q ss_pred cccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccc--eeeEEEcCC-CC-EEE
Q 011257 340 IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD--KFECCLSGD-GG-RVA 414 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~d-~~-~l~ 414 (490)
....+.+|+.+|++++.|+.+. |+|.++|+.+ +..++.+++..+..-.-........... -....-.+. .. +++
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 4456889999999998888766 9999999997 8888888776654210000000000000 000000000 11 344
Q ss_pred EeecCCeEEEEecCCCceeeeEecc
Q 011257 415 TGSYSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 415 s~~~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
-+-.-|.|.||.++.|.. +..+..
T Consensus 385 yaprRg~lEvW~~~~g~R-v~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPR-VAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCE-EEEEEe
Confidence 566789999999999876 444443
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.80 E-value=0.0061 Score=53.40 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=98.5
Q ss_pred CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 126 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
+..+++++.++.+..||..+++............ ..... ++. .++.+..++
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~----------------~~~~~-~~~------------~v~v~~~~~ 86 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS----------------GAPVV-DGG------------RVYVGTSDG 86 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----------------SGEEE-ETT------------EEEEEETTS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----------------ceeee-ccc------------cccccccee
Confidence 4578888899999999999998777665532110 00111 122 455555666
Q ss_pred cEEEeeeecccccccccce-eeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCC--
Q 011257 206 SLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-- 281 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-- 281 (490)
.+..+|. ......+. ........ ...........+..++.+ .++.|..+|++++......- ........+
T Consensus 87 ~l~~~d~----~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~ 160 (238)
T PF13360_consen 87 SLYALDA----KTGKVLWSIYLTSSPPA-GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP-VGEPRGSSPIS 160 (238)
T ss_dssp EEEEEET----TTSCEEEEEEE-SSCTC-STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE-SSTT-SS--EE
T ss_pred eeEeccc----CCcceeeeecccccccc-ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee-cCCCCCCccee
Confidence 7777661 11111111 00000000 011122222237777777 79999999998665544331 110000000
Q ss_pred -CCceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE
Q 011257 282 -TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (490)
Q Consensus 282 -~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg 359 (490)
...+..-....++ .+..++.++. +.+ |+.+++.. +.... ..+..+ ...++..|+.+
T Consensus 161 ~~~~~~~~~~~~~~--~v~~~~~~g~~~~~-d~~tg~~~------w~~~~------------~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 161 SFSDINGSPVISDG--RVYVSSGDGRVVAV-DLATGEKL------WSKPI------------SGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp EETTEEEEEECCTT--EEEEECCTSSEEEE-ETTTTEEE------EEECS------------S-ECEC-EECCCTEEEEE
T ss_pred eecccccceEEECC--EEEEEcCCCeEEEE-ECCCCCEE------EEecC------------CCccCC-ceeeCCEEEEE
Confidence 0111222222344 5555666665 555 99998632 21111 122221 33566677765
Q ss_pred c-CCeEEEEeccCCCCce
Q 011257 360 D-YMTLKLWDINMDSGPV 376 (490)
Q Consensus 360 ~-d~~i~iwd~~~~~~~~ 376 (490)
+ ++.|..||+++ ++.+
T Consensus 219 ~~~~~l~~~d~~t-G~~~ 235 (238)
T PF13360_consen 219 SSDGRLYALDLKT-GKVV 235 (238)
T ss_dssp ETTTEEEEEETTT-TEEE
T ss_pred eCCCEEEEEECCC-CCEE
Confidence 4 79999999997 5543
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.78 E-value=0.027 Score=51.47 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=73.6
Q ss_pred cceeEEEecCCC-CEEEEe----cCCc-EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe----C
Q 011257 234 YHINSISNNSDG-ETFISA----DDLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----S 303 (490)
Q Consensus 234 ~~v~~i~~~~~~-~~l~~~----~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~ 303 (490)
..+..+.|+|.. .+++.| .+.. -++|-+++.+.....+. -......+..--|.|+|..+..-+. .
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-----~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-----RRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-----cCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 445677888864 444445 2332 47787776554443321 1112355666778999944444332 2
Q ss_pred CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE-EcC--C--------------eEEE
Q 011257 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY--M--------------TLKL 366 (490)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~d--~--------------~i~i 366 (490)
+..|.-+|..+++.. ..... .+...+--++||++++. |+| . -|++
T Consensus 263 ~~~i~~~d~~t~~~~----~~~~~--------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~ 324 (386)
T PF14583_consen 263 DFWIAGYDPDTGERR----RLMEM--------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL 324 (386)
T ss_dssp -EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred ceEEEeeCCCCCCce----EEEeC--------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Confidence 345667777776431 11111 23445667889999886 554 1 4555
Q ss_pred EeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecC
Q 011257 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS 428 (490)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~ 428 (490)
+++.. .....+..|.....-+.. ...... -...|+|||++|+..| ..|...||-++
T Consensus 325 ~~~~~--~~~~~l~~h~~sw~v~~~--~~q~~h--Php~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 325 FDVEA--GRFRKLARHDTSWKVLDG--DRQVTH--PHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EETTT--TEEEEEEE-------BTT--BSSTT------EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecccc--CceeeeeeccCcceeecC--CCccCC--CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 66653 222333333211000000 000000 1679999999977666 46776666544
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0024 Score=60.30 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=79.6
Q ss_pred eEEEecCCCCEEEEe--cCCc--EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCe--EEEE
Q 011257 237 NSISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS--IRLI 310 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~--~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--i~iw 310 (490)
...+|+|||+.|+.+ .|+. |+++|+.... ..+ +....+.-..-.|+|+|..++.+.+..|. |.++
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~--------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPR--------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-cee--------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 356799999999886 4555 5555666333 221 22223333367899999444455555665 5555
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCe--EEEEeccCCCCceeeeeeecccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMT--LKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~--i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
|...+... ..++... .-..-.|+|||++|+..+ +|. |.+.|+.. +..++.+......
T Consensus 312 ~~~g~~~~---riT~~~~--------------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~-~~~~~~lt~~~~~- 372 (425)
T COG0823 312 DLEGSQVT---RLTFSGG--------------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS-GGKIRILTSTYLN- 372 (425)
T ss_pred CCCCCcee---EeeccCC--------------CCcCccCCCCCCEEEEEeccCCceeeEEeccCC-CCcEEEccccccC-
Confidence 65554421 1222221 122667999999999754 455 66666664 3324444333221
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeec
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 418 (490)
..-.|.++++.+...+.
T Consensus 373 ---------------e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 373 ---------------ESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ---------------CCCCcCCCCceEEEecc
Confidence 15578888888775554
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.011 Score=56.27 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=100.6
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
..|..++++|+|+ ++++ ..+|...++. .. ..+ ....+.-..++|.+.++ +|+-
T Consensus 33 ~~p~~ls~npngr------------~v~V-~g~geY~iyt----~~---~~r------~k~~G~g~~~vw~~~n~-yAv~ 85 (443)
T PF04053_consen 33 IYPQSLSHNPNGR------------FVLV-CGDGEYEIYT----AL---AWR------NKAFGSGLSFVWSSRNR-YAVL 85 (443)
T ss_dssp S--SEEEE-TTSS------------EEEE-EETTEEEEEE----TT---TTE------EEEEEE-SEEEE-TSSE-EEEE
T ss_pred cCCeeEEECCCCC------------EEEE-EcCCEEEEEE----cc---CCc------ccccCceeEEEEecCcc-EEEE
Confidence 3456899999999 4444 7777777765 10 011 11114456788988554 6665
Q ss_pred -cCCcEEEE-EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 252 -DDLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 252 -~d~~i~~w-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
....|.++ +.. ......+ .+ ...+..+-. | .+|+..+.+ .|.+||..+++.+ +.++.
T Consensus 86 ~~~~~I~I~kn~~-~~~~k~i------~~---~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i----~~i~v-- 144 (443)
T PF04053_consen 86 ESSSTIKIYKNFK-NEVVKSI------KL---PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI----RRIDV-- 144 (443)
T ss_dssp -TTS-EEEEETTE-E-TT--------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE----EEESS--
T ss_pred ECCCeEEEEEcCc-cccceEE------cC---CcccceEEc---C-cEEEEECCC-CEEEEEhhHccee----eEEec--
Confidence 68889996 333 2221010 11 122333432 6 677666555 8999999998753 45443
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCC-----------CceeeeeeeccccccccccccCCCc
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSI 398 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
.+|..+.|+++|.+++..++..+.|++.+. . ..+..+..-...
T Consensus 145 ------------~~vk~V~Ws~~g~~val~t~~~i~il~~~~-~~~~~~~~~g~e~~f~~~~E~~~~------------- 198 (443)
T PF04053_consen 145 ------------SAVKYVIWSDDGELVALVTKDSIYILKYNL-EAVAAIPEEGVEDAFELIHEISER------------- 198 (443)
T ss_dssp -------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H-HHHHHBTTTB-GGGEEEEEEE-S--------------
T ss_pred ------------CCCcEEEEECCCCEEEEEeCCeEEEEEecc-hhcccccccCchhceEEEEEecce-------------
Confidence 348999999999999998777888888763 1 022222211111
Q ss_pred cceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCC
Q 011257 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 399 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
|.+.+|..| .++-.+.. .|+. +-.|+. .++..-..+++=+...|..
T Consensus 199 --IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~--~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 199 --IKSGCWVED--CFIYTTSN-HLKY--LVNGET--GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp ---SEEEEETT--EEEEE-TT-EEEE--EETTEE--EEEEE-SS--EEEEEETTT
T ss_pred --eEEEEEEcC--EEEEEcCC-eEEE--EEcCCc--ceEEEcCCceEEEEEEccC
Confidence 347888765 44444443 6666 555543 2333334566666666643
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=1.6e-05 Score=74.62 Aligned_cols=189 Identities=12% Similarity=0.126 Sum_probs=117.8
Q ss_pred cceeEEEecC--CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC----CCe
Q 011257 234 YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGS 306 (490)
Q Consensus 234 ~~v~~i~~~~--~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~ 306 (490)
..+.|+++.- +..+++.| .+|.|-+-..+.....-. ...+++....++++|++-..+.||+|-. |..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------eecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 4456666544 34577778 889999988874433211 1346678889999999976567777743 567
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccc
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
+.|||+.++-........|.. +......+++|..+.+++.+|.. ..+.++|++. ............
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~-----------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~~~svnTk~ 197 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSS-----------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDSVSSVNTKY 197 (783)
T ss_pred ccceecccccCCCcccccccc-----------ccccCccccccccCcchhhcccccchhhhhhhhh--hhhhhhhhhhhh
Confidence 999999876211000011111 12245568999989999999854 8999999983 222111111111
Q ss_pred cccccccccCCCccceeeEEEcC-CCCEEEEeecCCeEEEEe-cCCCceeeeEeccCCC----ceEEEEEccCCCCCC
Q 011257 386 RPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG-CSEGSAESTTLEASKN----PMRRQVQTPSRPSRP 457 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~vw~-~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~~~ 457 (490)
|..+..+| .+.++++-. ||.|.+|| ...-+..++.+..... .+..++|+|..+..+
T Consensus 198 ---------------vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgll 259 (783)
T KOG1008|consen 198 ---------------VQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLL 259 (783)
T ss_pred ---------------cccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchh
Confidence 12567777 778887655 89999999 4433332333333333 389999999885443
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.71 E-value=0.034 Score=49.88 Aligned_cols=266 Identities=12% Similarity=0.118 Sum_probs=130.7
Q ss_pred cEEEEEECCCCCEEEEec----------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccccee
Q 011257 37 IISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (490)
-.-.+..|||++.+++++ ..-.|.+||..+...... +...+..+......
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E-----------I~iP~k~R~~~~~~--------- 96 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE-----------IEIPPKPRAQVVPY--------- 96 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE-----------EEETTS-B--BS-----------
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce-----------EecCCcchheeccc---------
Confidence 344577899999888743 334799999887542100 00000001111000
Q ss_pred eeeeeccceeEEEEeecCCCcEEEEE--eCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 107 KSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 107 ~~~~~~~~V~~v~~~p~~~~~~l~~~--~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
.+..+++ .++++++.. +---.|.|-|+..++.......++ |.-.-|.+.
T Consensus 97 --------~~~~~ls--~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~~ 147 (342)
T PF06433_consen 97 --------KNMFALS--ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSGN 147 (342)
T ss_dssp --------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEET
T ss_pred --------ccceEEc--cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecCC
Confidence 1123444 355666553 444578888888888776555443 222233332
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEecCCcEEEEEcCC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISADDLRINLWNLEI 263 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~d~~i~~wd~~~ 263 (490)
. -+.+-+.||.+.-..+... +....+....+.......+..-++...+ .++....+|.|+--|+..
T Consensus 148 ~-----------~F~~lC~DGsl~~v~Ld~~--Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 148 R-----------GFSMLCGDGSLLTVTLDAD--GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp T-----------EEEEEETTSCEEEEEETST--SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred C-----------ceEEEecCCceEEEEECCC--CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccC
Confidence 1 3556667777665542211 1111111122212222222233444444 444455788888888874
Q ss_pred CCcee-eeeecCC-Cc--cCCCCCceEEEEEcCCCCcEEEEEeC--C-------CeEEEEeCCCccccccccceeccccC
Q 011257 264 SNQSF-NIVDVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSSS--K-------GSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 264 ~~~~~-~~~~~~~-~~--~~~~~~~v~~~~~~p~~~~~l~~~~~--d-------g~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
....+ ..+.+-. .. -.-..+.-.-+++++...++++.-.. + ..|.++|+.+++.+ +.+...
T Consensus 215 ~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv----~Ri~l~-- 288 (342)
T PF06433_consen 215 DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV----ARIPLE-- 288 (342)
T ss_dssp SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE----EEEEEE--
T ss_pred CcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE----EEEeCC--
Confidence 43221 1111100 00 00012233457777655244443321 1 15788898888753 444432
Q ss_pred CCccccccccccceEEEEECCCCC-EEEEE--cCCeEEEEeccCCCCceeeeeee
Q 011257 331 PGTRSFFTEIIASISDIKFARNGR-HILSR--DYMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~-~l~sg--~d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
.++.+|.++.|.+ +|++. .++.+.+||..+ ++.+.++..-
T Consensus 289 -----------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 289 -----------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp -----------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred -----------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence 4678999999776 55443 358999999998 8888877643
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.70 E-value=0.0077 Score=60.60 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=70.3
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
.+.| ++..+..||.+..+... +...... .......+|++-+.+| .||.|+.+|.||+||- .+... ++
T Consensus 545 tflGls~n~lfriDpR~~~~k~--v~~~~k~-Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A----KT-- 612 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKL--VDSQSKQ-YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA----KT-- 612 (794)
T ss_pred eEEEECCCceEEeccCCCCCce--eeccccc-cccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh----hh--
Confidence 3445 88889999998654221 1111111 1235567889888888 8999999999999993 33211 11
Q ss_pred cccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEecc
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
.+.+...+|..|..+.||+||++..+..+.+++..
T Consensus 613 ---------~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 613 ---------ALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ---------cCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 12233378999999999999999888888888864
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00052 Score=65.62 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d 361 (490)
...|.--+++..+ .+++.|+.-|.+++|+-..++.. .....+.. +.+..++.|++..++|+|++
T Consensus 33 ~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~---~~~~~~~~------------~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 33 PARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMR---KLKNEGAT------------GITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred cceEEEEEeecCC-ceEEEecccceEEEEecCchhhh---cccccCcc------------ceEEEEEecchhHhhhhhcC
Confidence 3344444455566 89999999999999998777543 12222211 45677788888888888876
Q ss_pred -CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|.|.++.+.....+-..+..+.+.. .-..|++++|++|+..+.+|...|+|..-.+.+
T Consensus 97 ~g~V~v~ql~~~~p~~~~~~t~~d~~----------~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPRDLDYVTPCDKS----------HKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEeehhhccCCCcceeecccccc----------CCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999999886333333333332221 111278999999999999999999999988887
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.57 E-value=0.032 Score=52.07 Aligned_cols=149 Identities=14% Similarity=0.276 Sum_probs=77.1
Q ss_pred ccceeEEEecCCCCEEEEe---c---CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc-CCCCcEEEEEeCCC
Q 011257 233 DYHINSISNNSDGETFISA---D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKG 305 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~---~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg 305 (490)
...+..+.|.++++.|+.. . ...+.+.|..++......... ..+--..-..+.+. +++..++.....||
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~----~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G 258 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET----SDGWVDVYDPPHFLGPDGNEFLWISERDG 258 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE----SSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec----CCcceeeecccccccCCCCEEEEEEEcCC
Confidence 4567789999999844442 2 234556677643332222111 11111222345554 66646666666777
Q ss_pred e--EEEEeCCCccccccccceeccccCCCccccccccccceEE-EEECCCCCEEE-EEc--C-CeEEEEeccCC-CCcee
Q 011257 306 S--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHIL-SRD--Y-MTLKLWDINMD-SGPVA 377 (490)
Q Consensus 306 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~g~~l~-sg~--d-~~i~iwd~~~~-~~~~~ 377 (490)
. |.+++...+.. +.+.... -.|.. +.++++++.|. ++. + ..-.||.+... +..+.
T Consensus 259 ~~hly~~~~~~~~~-----~~lT~G~------------~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 259 YRHLYLYDLDGGKP-----RQLTSGD------------WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp SEEEEEEETTSSEE-----EESS-SS------------S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred CcEEEEEcccccce-----eccccCc------------eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 5 44455555431 2222221 34544 67888877665 343 2 45556655543 44555
Q ss_pred eeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 011257 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 417 (490)
.+....... ..+.|||++++++-..
T Consensus 322 ~LT~~~~~~---------------~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 322 CLTCEDGDH---------------YSASFSPDGKYYVDTY 346 (353)
T ss_dssp ESSTTSSTT---------------EEEEE-TTSSEEEEEE
T ss_pred eccCCCCCc---------------eEEEECCCCCEEEEEE
Confidence 554433321 2799999999887543
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.57 E-value=0.054 Score=49.56 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCcEEEEEeCC---C-eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEE
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSK---G-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~ 357 (490)
...+..+.|+|..+.+|+.|.+. . .-|||-+++..... +.+..+.. . ..+..=-|.|||..|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~---~~v~~~~~----~------e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV---KKVHRRME----G------ESVGHEFWVPDGSTIW 253 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---T----T------EEEEEEEE-TTSS-EE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc---eeeecCCC----C------cccccccccCCCCEEE
Confidence 56678899999887888887652 2 12555544332221 22221110 0 3445556899998776
Q ss_pred E-E-----cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC-----------
Q 011257 358 S-R-----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----------- 420 (490)
Q Consensus 358 s-g-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg----------- 420 (490)
- + .+..|.-+|+.+ ++........ . ..-+--++||++++.=+.|.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t-~~~~~~~~~p--~---------------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDT-GERRRLMEMP--W---------------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT---EEEEEEE---S---------------EEEEEE-TTSSEEEEEE--------------
T ss_pred EEeecCCCCceEEEeeCCCC-CCceEEEeCC--c---------------eeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 4 2 124566677775 4332222111 1 01455678999887544332
Q ss_pred -----eEEEEecCCCceeeeEeccCC----------C-ceEEEEEccCCCCCCCCccC
Q 011257 421 -----LFRVFGCSEGSAESTTLEASK----------N-PMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 421 -----~i~vw~~~~~~~~~~~~~~~~----------~-~v~~~~~sp~~~~~~~~~~~ 462 (490)
-|++++++.+.. ..+..|. . .-....||||++.+++.+.-
T Consensus 316 ~~~~p~i~~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp -----EEEEEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred ecCCcEEEEeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 466788876653 2222221 1 23567999999998877643
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.0022 Score=62.75 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=61.4
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
-.-.+++++|+|..-.||.|-.-|.+.+|...+.+. ......|+ .
T Consensus 58 ~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-----------------------htv~~th~------------a 102 (1416)
T KOG3617|consen 58 YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-----------------------HTVVETHP------------A 102 (1416)
T ss_pred cceehhhhccChHHHHHhhccccceeEEEecCCcee-----------------------eeeccCCC------------C
Confidence 344568899999998999999999999999877652 23345676 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEcc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~ 144 (490)
+|..+.|+| +|..++++..-|.+.+|..+
T Consensus 103 ~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 103 PIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 899999996 67799999999999999876
No 346
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.49 E-value=0.0051 Score=59.57 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=52.5
Q ss_pred cceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCc------------eeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 342 ASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP------------VATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
.....+.++|||+++++++ +.++.|.|+.+ .+. +.......+. ...+|.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFD 383 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFD 383 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEEC
Confidence 3568899999999999864 49999999986 321 1122211111 267899
Q ss_pred CCCCEEEEeecCCeEEEEecCC
Q 011257 408 GDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
++|+...+-.-|..|..|++..
T Consensus 384 g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 384 GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCEEEeEeecceeEEEehHH
Confidence 9999888888899999999986
No 347
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00048 Score=61.29 Aligned_cols=87 Identities=16% Similarity=0.300 Sum_probs=66.3
Q ss_pred cCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEE
Q 011257 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (490)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~ 357 (490)
+..+...|.+++|+|...-++..++.+..|+|.|+++.... ..+..+ ..+++++|.-|....+
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v----ssy~a~-------------~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV----SSYIAY-------------NQIWSCCWDLDERHVI 251 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceee----eheecc-------------CCceeeeeccCCccee
Confidence 46678889999999988348899999999999999987542 344444 5799999998766555
Q ss_pred -EEc-CCeEEEEeccCCCCceeeeee
Q 011257 358 -SRD-YMTLKLWDINMDSGPVATFQV 381 (490)
Q Consensus 358 -sg~-d~~i~iwd~~~~~~~~~~~~~ 381 (490)
+|. .|.|.|||++.+..++..+.+
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhh
Confidence 554 399999999976555555544
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0007 Score=63.95 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=73.2
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
..+..+.|+|.-..+|.+. +|.|.+..+. .+.+.++..+...+ ..+++|.|||++||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v--------------~~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENV--------------TASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCcc--------------ceeeeecCCCCEEEEEecCC
Confidence 4578899999999999985 5888888886 56666666444332 12899999999999999999
Q ss_pred eEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
+|++-|+.+|............+|.++-|+|
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999775444445567788888874
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.43 E-value=0.12 Score=49.19 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.7
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeee
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
+++..+++||+|++||.-. +|.+.+.+.+. .+.+..+...
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~~ 257 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDTD 257 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeecC
Confidence 5799999999999999864 49998888775 5555555444
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.43 E-value=0.048 Score=47.36 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=100.3
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeee-ccccccceeEEEecCCCCEEEEe-cC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DD 253 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (490)
.++|.|+.+. ++++....+.|.-++ .++ +.++.+ +.+ ....-.|++..++.++++. .+
T Consensus 26 GLTy~pd~~t-----------LfaV~d~~~~i~els----~~G----~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 26 GLTYNPDTGT-----------LFAVQDEPGEIYELS----LDG----KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp EEEEETTTTE-----------EEEEETTTTEEEEEE----TT------EEEEEE-SS--SSEEEEEE-STTEEEEEETTT
T ss_pred ccEEcCCCCe-----------EEEEECCCCEEEEEc----CCC----CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCC
Confidence 7899998774 455666666665554 121 122222 122 3556788888888777777 69
Q ss_pred CcEEEEEcCCCCceeeeee---cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--ccccccccceeccc
Q 011257 254 LRINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ 328 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~ 328 (490)
+.+.++++..........+ +.......+...+-.++|+|.+ +.|+.+-...-.++|.+.. ...... .......
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~ 163 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDL 163 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHH
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCcccee-ecccccc
Confidence 9999999854332211111 1101112345668899999987 5555555555566666553 110000 0000000
Q ss_pred cCCCccccccccccceEEEEECCCC-CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g-~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
.. .......+.++.++|.. .+++.++ ...|..+|.. ++++..+.-..+.......+.. --.++|
T Consensus 164 ~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~Q------pEGIa~ 229 (248)
T PF06977_consen 164 DD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQ------PEGIAF 229 (248)
T ss_dssp H-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---S------EEEEEE
T ss_pred cc------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCC------ccEEEE
Confidence 00 01112457889999954 4444454 3889999954 7777766554421110000000 017999
Q ss_pred cCCCCEEEEeecCCeEEEE
Q 011257 407 SGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw 425 (490)
.++|++.++ ++-+..+++
T Consensus 230 d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 230 DPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -TT--EEEE-ETTTEEEEE
T ss_pred CCCCCEEEE-cCCceEEEe
Confidence 999976554 466666554
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.35 E-value=0.094 Score=49.85 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=91.6
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
+.+.++.|+.+.++++...||.+++||+. +...+.+- .......-....+....+..+| -.++ ..++.+.+.+-.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~-~~i~~~~v~e~~i~~~~~~~~G-ivvL--t~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLG-EEIEEEKVLECRIFAIWFYKNG-IVVL--TGNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cceeechh-hhccccCcccccccccccCCCC-EEEE--CCCCeEEEEeCc
Confidence 78899999998777777799999999997 33321110 0000011112223333444455 2333 345555444322
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeecccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (490)
..... .+.+. ..+........+.....-..++.+....+.. .++.+.+-+-.. ... +...
T Consensus 156 ~~~~~---~~~~~--~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~-~~~---i~~~---------- 216 (410)
T PF04841_consen 156 DEPVK---LRRLP--EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS-FKQ---IDSD---------- 216 (410)
T ss_pred cccch---hhccc--cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc-ccc---ccCC----------
Confidence 21111 01111 1110000001111110112344444444443 335555343321 111 1111
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC-CCceEEEEEccCC
Q 011257 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSR 453 (490)
Q Consensus 393 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~sp~~ 453 (490)
.++..+++||++++||.-..+|.+.|...+-.+. +..+... ......+.|..+.
T Consensus 217 ------~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~-~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 ------GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK-LCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ------CCeEEEEECCCCCEEEEEECCCCEEEEECcccce-eEEeecCcCCCCcEEEEECCC
Confidence 1145899999999999999999999988765544 3333322 3566677777653
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.26 E-value=0.00048 Score=39.89 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.8
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEE
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd 63 (490)
.|...|.++.|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5778999999999999999999999999996
No 353
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.11 Score=44.77 Aligned_cols=248 Identities=11% Similarity=0.097 Sum_probs=127.0
Q ss_pred EEEEeecCCCcEEEEEeCcCe-EEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKT-IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
.|+|+|.. ..-++.+-.-|+ ..++|..+.+...+...... .-+-. .-.|||||.
T Consensus 72 gi~~~p~~-~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~--------RHfyG-----HGvfs~dG~----------- 126 (366)
T COG3490 72 GIAFHPAL-PRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG--------RHFYG-----HGVFSPDGR----------- 126 (366)
T ss_pred CeecCCCC-cceEEEEecCCceEEEECCCCCcCcEEEecccC--------ceeec-----ccccCCCCc-----------
Confidence 37788744 345566666665 45788887664443332211 11111 337899999
Q ss_pred CccccC-----CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEE--------EcC
Q 011257 196 DSSFPP-----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW--------NLE 262 (490)
Q Consensus 196 ~~l~~~-----~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~w--------d~~ 262 (490)
+|.+. ...|.|-+||. . ......+ . +..|.-....+.+.+||+.++.+..| |... ++.
T Consensus 127 -~LYATEndfd~~rGViGvYd~-r-~~fqrvg----E-~~t~GiGpHev~lm~DGrtlvvanGG-IethpdfgR~~lNld 197 (366)
T COG3490 127 -LLYATENDFDPNRGVIGVYDA-R-EGFQRVG----E-FSTHGIGPHEVTLMADGRTLVVANGG-IETHPDFGRTELNLD 197 (366)
T ss_pred -EEEeecCCCCCCCceEEEEec-c-cccceec----c-cccCCcCcceeEEecCCcEEEEeCCc-eecccccCccccchh
Confidence 44433 34578999982 2 1111111 1 25666677889999999999886332 3332 222
Q ss_pred CCCceeeeee------cCCCccC--CCCCceEEEEEcCCCCcEEEEEeCCCeE-----EEEeCCCccccccccceecccc
Q 011257 263 ISNQSFNIVD------VKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSI-----RLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 263 ~~~~~~~~~~------~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i-----~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
+-+..+.+++ ++..++. .+.-.+..++..+|| ..++.+-..|.- .+=-...++. +..+...
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~----l~~~~~p- 271 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEP----LEFLDLP- 271 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCc----CcccCCC-
Confidence 2222222222 1111233 345567888888888 554444332210 0000011110 1111111
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
..........|-+|+.+-+..+++..+ .+...+||..+ +..+....... +.-.-
T Consensus 272 ----ee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l~d-------------------aaGva 327 (366)
T COG3490 272 ----EEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAALPD-------------------AAGVA 327 (366)
T ss_pred ----HHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEecccccc-------------------cccce
Confidence 111122335678888887656665543 37889999997 66554333222 11222
Q ss_pred CCCCEEEEeecCCeEEEEecC
Q 011257 408 GDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~ 428 (490)
+...-++..+.+|.+.++.-.
T Consensus 328 ~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 328 AAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred eccCceEEecCCceEEecccc
Confidence 344445556677888887433
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.15 E-value=0.031 Score=40.98 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=46.2
Q ss_pred eEEEEE---cCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC
Q 011257 285 ITSAEF---HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (490)
Q Consensus 285 v~~~~~---~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d 361 (490)
|+++++ .-+|.+.|++|+.|..||+|+-..- +..+... ..|++++-...+++.++-.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~------~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI------VAEITET-------------DKVTSLCSLGGGRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE------EEEEecc-------------cceEEEEEcCCCEEEEEecC
Confidence 444444 4466688999999999999985532 3444443 57888887776554444466
Q ss_pred CeEEEEecc
Q 011257 362 MTLKLWDIN 370 (490)
Q Consensus 362 ~~i~iwd~~ 370 (490)
|+|-+|+-.
T Consensus 63 GTVGvY~~~ 71 (111)
T PF14783_consen 63 GTVGVYDRS 71 (111)
T ss_pred CEEEEEeCc
Confidence 999998764
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.08 E-value=0.21 Score=44.87 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=84.8
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee-
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD- 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~- 272 (490)
.++.|+.|+.+| +.++++ .+. ....+ ..+...|..+...++-+.|++-.|+.+.++++..-........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~---~~~---~~~~~---i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDL---SDP---SKPTR---ILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC-EEEEEe---cCC---cccee---EeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccc
Confidence 345889998888 888872 011 11111 1122348899999988888777779999999875433321000
Q ss_pred --cCC---CccCCCCCceEEEE--EcCCCCcEEEEEeCCCeEEEEeCCCccccc-cccceeccccCCCccccccccccce
Q 011257 273 --VKP---ANMEDLTEVITSAE--FHPTHCNMLAYSSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 273 --~~~---~~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
.+. .........+..++ -...+ ...++.....+|.+|......... ...+.+... ..+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-------------~~~ 141 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-------------DPP 141 (275)
T ss_pred cccccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEEcC-------------CCc
Confidence 000 00111223344444 22333 344445555689998877642221 223444433 467
Q ss_pred EEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 345 SDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
..++|. +..|+.|..+...+.|+.+
T Consensus 142 ~~i~~~--~~~i~v~~~~~f~~idl~~ 166 (275)
T PF00780_consen 142 SSIAFL--GNKICVGTSKGFYLIDLNT 166 (275)
T ss_pred EEEEEe--CCEEEEEeCCceEEEecCC
Confidence 888888 5567766555677777764
No 356
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.08 E-value=0.35 Score=47.45 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEec
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 438 (490)
.+.+|+.++.||.|+.+|.++|+.+ -..+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l-W~~~ 433 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL-WKFR 433 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee-eEEE
Confidence 5578888899999999999999873 3443
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.04 E-value=0.0019 Score=37.21 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=24.0
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
|.++.|.+++.++++++.|+.+++|+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56999999999999999999999996
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.076 Score=49.80 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred Ee-cCCcEEEEEcCCCCc-eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 250 SA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
.| ++..|.-||.+..+. .+...+.+ .+ .......|++-..+| +++.|+.+|.||+||- .+... -..++
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~k--qy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A---KTAlP- 468 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQSK--QY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA---KTALP- 468 (644)
T ss_pred EeecCCceEEecccccCcceeeeeecc--cc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh---hhccc-
Confidence 35 788888899885554 22221111 11 123456788888887 8999999999999996 43321 11222
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEecc
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
+...+|..|..+.||++|++..+..+.+-++.
T Consensus 469 -----------gLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 469 -----------GLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred -----------ccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 23378999999999999998887777777764
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.00 E-value=0.0028 Score=38.59 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=29.1
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEec
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~ 65 (490)
....|.+++|+|...+||.|+.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34579999999999999999999999999984
No 360
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.043 Score=47.19 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred EecCCCCEEEEe-c-----CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---------
Q 011257 240 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 304 (490)
Q Consensus 240 ~~~~~~~~l~~~-~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------- 304 (490)
.|+|||.+|... . -|.|-+||.+..-+..- ++..|.-....+.+.+|| +.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvg-------E~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR 191 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVG-------EFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGR 191 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceec-------ccccCCcCcceeEEecCC-cEEEEeCCceecccccCc
Confidence 499999999985 2 37899999984433322 456777777889999999 777765321
Q ss_pred ---------CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-C----eEEEEecc
Q 011257 305 ---------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M----TLKLWDIN 370 (490)
Q Consensus 305 ---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~----~i~iwd~~ 370 (490)
-.+.+.|..+++++.++ ++.. ..+.-.|+.++..+||..++.+.. | .--+--..
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh--~Lp~----------~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~ 259 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKH--TLPA----------SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF 259 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhc--cCch----------hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeec
Confidence 12333444444433221 1110 122357888999999988876531 1 11111112
Q ss_pred CCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCce
Q 011257 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSA 432 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~ 432 (490)
..+++++-+........... .. |-+++.+.+..+++..+ ..+...+||..+|..
T Consensus 260 ~~g~~l~~~~~pee~~~~~a-----nY---igsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 260 RKGEPLEFLDLPEEQTAAFA-----NY---IGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred cCCCcCcccCCCHHHHHHHH-----hh---hhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 23555555544332211110 01 23777777666665555 556788999999976
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.21 Score=45.14 Aligned_cols=94 Identities=13% Similarity=0.219 Sum_probs=62.0
Q ss_pred cceEEEEECCCCCEEEEEc-C-CeEEEEeccCCCCce------eeeeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 011257 342 ASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPV------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d-~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 413 (490)
..-+.|+||||++.|...+ . +.|.-|++......+ .......+.. =.++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---------------DG~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---------------DGMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---------------CceEEeCCCCEE
Confidence 4457899999999888874 3 888888776201111 1111111110 157788889988
Q ss_pred EEeecCC-eEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 414 ATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 414 ~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
+++-.+| .|.+|+.+ |+. +..++.+...+.+++|--.
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKL-LGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EecccCCceEEEECCC-CcE-EEEEECCCCCCccceEeCC
Confidence 6555554 89999999 776 5777777677888888754
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.96 E-value=0.08 Score=48.76 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=80.4
Q ss_pred CcEEEEEcCCC---CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc-ccccccceecccc
Q 011257 254 LRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-LCDTHSKLFEEQE 329 (490)
Q Consensus 254 ~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 329 (490)
|.|.++++... ...+..+ .-....++|++++-- ++ + |+.+ .++.|.+|++...+ ... ...+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~~--~~~~~~~- 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLLK--KAFYDSP- 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEEE--EEEE-BS-
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccchh--hheecce-
Confidence 88999999853 1222222 112346788888777 44 4 4433 45789999998876 210 1111111
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
..+.++... +.+++.|+- ..+.++..+.....+..+....... .++++.|-+
T Consensus 130 ------------~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-------------~v~~~~~l~ 182 (321)
T PF03178_consen 130 ------------FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-------------WVTAAEFLV 182 (321)
T ss_dssp ------------SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-------------EEEEEEEE-
T ss_pred ------------EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-------------cEEEEEEec
Confidence 245555554 668888865 7888876654233344333322211 156888887
Q ss_pred CCCEEEEeecCCeEEEEecC
Q 011257 409 DGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~ 428 (490)
|++.++.+..+|.|.++...
T Consensus 183 d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-
T ss_pred CCcEEEEEcCCCeEEEEEEC
Confidence 77799999999999999887
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.14 Score=48.29 Aligned_cols=181 Identities=12% Similarity=0.138 Sum_probs=112.8
Q ss_pred eeEEEecCCCCEEEE-e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe--CCCeEEEEe
Q 011257 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (490)
Q Consensus 236 v~~i~~~~~~~~l~~-~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd 311 (490)
...+++++.++.+.. . .++.|.+.|..... ..... .. ......++++|++..+.++-. .++++.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~-~~~~~------~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT-VLGSI------PV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccc-eeeEe------ee--ccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 346788888885555 4 67999999976433 32221 11 125678999999944444444 368899999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCcee-----eeeeecc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHEH 384 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~-----~~~~~~~ 384 (490)
-.+++.. ....... .+ ..++++|+|..+.... ++.|.+.|... ....+ .......
T Consensus 147 ~~t~~~~----~~~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~ 208 (381)
T COG3391 147 AATNKVT----ATIPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTG 208 (381)
T ss_pred CCCCeEE----EEEecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCC
Confidence 8887643 2221111 23 7899999999877764 59999999774 33322 1111111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeecC---CeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
. ..+.++|+|+++...... +.+.+.|..++................++.+|+|...-..
T Consensus 209 P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 209 P----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA 270 (381)
T ss_pred C----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence 1 278999999976654433 6899999998765322122211145667888888765544
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0068 Score=57.57 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=60.6
Q ss_pred cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceE-EEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
..+.-+.|+|.-.++|.+ .+|.+-+..+. ..+... ++-+...++ +++|.||| +++|.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt--------ip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT--------IPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEe--------ccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 89999988887 443332 333444555 99999999 9999999999999999
Q ss_pred CCCcccc
Q 011257 312 MRQSALC 318 (490)
Q Consensus 312 ~~~~~~~ 318 (490)
+.++...
T Consensus 91 ve~~~~l 97 (665)
T KOG4640|consen 91 VEKGGRL 97 (665)
T ss_pred ccCCCce
Confidence 9998754
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.84 E-value=0.11 Score=38.12 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=37.6
Q ss_pred cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc---CCCCcEEEEEeCCCeEE
Q 011257 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~ 308 (490)
..|.+++-... ..|+.+ .+|+|-+|+-. .+..+ +| ....+.++++. -+|..-|++|-.+|.|-
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR---iK------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR---IK------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee---ec------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 45566665555 457777 89999888764 22222 11 12224555443 34545799999998874
No 366
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.83 E-value=0.71 Score=47.10 Aligned_cols=177 Identities=11% Similarity=0.114 Sum_probs=92.8
Q ss_pred CCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC--------------CeEEEE
Q 011257 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------------GSIRLI 310 (490)
Q Consensus 245 ~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------------g~i~iw 310 (490)
...|+++..+.+.+..+..-++. .. ++. .....+..+++.+.. ..+.+.+.. ..++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl-~i-----rtv-pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKL-HI-----RTV-PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhc-ce-----eee-cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 45677777777888877633222 11 111 123445667777744 444444331 135666
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCC-CCEEEEEc----------C-CeEEEEeccCCCCceee
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 378 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-g~~l~sg~----------d-~~i~iwd~~~~~~~~~~ 378 (490)
|-.+-+. +..|+.... +-.-.+.++.|..| +.+++.|. . |.|.+|.... .+.++.
T Consensus 756 D~nTf~v-------l~~hef~~~-----E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEV-------LSSHEFERN-----ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeE-------Eeecccccc-----ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 6555332 222211000 01134666678877 77777662 1 7888888874 444444
Q ss_pred eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
...+.-... |.++..- +|++||. -...|++|++.+++. ++.-..+..++..+...-.|...+.
T Consensus 823 v~e~~v~Ga-------------v~aL~~f-ngkllA~--In~~vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKGA-------------VYALVEF-NGKLLAG--INQSVRLYEWTTERE-LRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeeccc-------------eeehhhh-CCeEEEe--cCcEEEEEEccccce-ehhhhcccCCeEEEEEEecCcEEEE
Confidence 433321100 1233221 6777764 456899999998854 4555555566666555554444443
Q ss_pred C
Q 011257 459 G 459 (490)
Q Consensus 459 ~ 459 (490)
+
T Consensus 886 g 886 (1096)
T KOG1897|consen 886 G 886 (1096)
T ss_pred e
Confidence 3
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0076 Score=60.89 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=72.4
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCC
Q 011257 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (490)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~ 374 (490)
..++.|+..|.+...|...+ .. ++ ....+. .++|++++|+.+|+.++.| .+|.|.+||..+ ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~--~~-~~ne~v-----------~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LG--PL-HQNERV-----------QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cc--hh-hcCCcc-----------CCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57889999999999888764 11 00 111111 2789999999999999999 679999999997 88
Q ss_pred ceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
+++.+..+..... .|.-+.+..++..+.++...|. +|++
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8888877665432 1335566666667777777775 5554
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.041 Score=51.50 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=45.6
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 262 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~ 262 (490)
++++|+.+|.|++|| . .....++.+.+-..+|..+..+.+|+++++..+..+.+-+..
T Consensus 443 ~IvvgS~~GdIRLYd-r-------i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYD-R-------IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eEEEeecCCcEEeeh-h-------hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 799999999999998 1 222233445777889999999999999988777777777765
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.77 E-value=0.44 Score=43.87 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=67.6
Q ss_pred ccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
.++|.+++-- +..|+.+.++.|.+|++......... ........+.++... + ++++.|.....+.++..
T Consensus 88 ~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~------~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 88 KGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKK------AFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRY 156 (321)
T ss_dssp SS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEE------EEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEE
T ss_pred cCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhh------heecceEEEEEEecc--c-cEEEEEEcccCEEEEEE
Confidence 4667777654 34577777789999999855522221 111122356666555 4 68888988888887754
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEecc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~ 370 (490)
+..... +..+..... ...++++.|-++++.+++++. |.+.++...
T Consensus 157 ~~~~~~---l~~va~d~~----------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNK---LILVARDYQ----------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE----EEEEEEESS-----------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCE---EEEEEecCC----------CccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 431110 122221111 156889999877677777764 999999886
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.74 E-value=0.12 Score=52.32 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=81.7
Q ss_pred cEEEEE-eCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC--------CCEEEEEcCCeEEE
Q 011257 296 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--------GRHILSRDYMTLKL 366 (490)
Q Consensus 296 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~--------g~~l~sg~d~~i~i 366 (490)
++|+.. .....|+-.|+..|+++ ..+..+.+ .+|..+ .|+ .+.++.-+++.+..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV----~eW~~~~~-----------~~v~~~--~p~~K~aqlt~e~tflGls~n~lfr 556 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVV----EEWKVHDD-----------IPVVDI--APDSKFAQLTNEQTFLGLSDNSLFR 556 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEE----EEeecCCC-----------cceeEe--cccccccccCCCceEEEECCCceEE
Confidence 444443 34578899999999864 56666542 223333 332 23333347789999
Q ss_pred EeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEE
Q 011257 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR 446 (490)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~ 446 (490)
||.+..+..+..-..+. |..+.- ..+++-+.+ .+||+|+.+|.||+||- .|+.--..+.+-.+||..
T Consensus 557 iDpR~~~~k~v~~~~k~---------Y~~~~~--Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 557 IDPRLSGNKLVDSQSKQ---------YSSKNN--FSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIG 623 (794)
T ss_pred eccCCCCCceeeccccc---------cccCCC--ceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeE
Confidence 99986432222111111 111111 125555544 46899999999999994 444322345566899999
Q ss_pred EEEccCCCCCCCC
Q 011257 447 QVQTPSRPSRPLG 459 (490)
Q Consensus 447 ~~~sp~~~~~~~~ 459 (490)
+..+.||+.++..
T Consensus 624 iDvt~DGkwilaT 636 (794)
T PF08553_consen 624 IDVTADGKWILAT 636 (794)
T ss_pred EEecCCCcEEEEe
Confidence 9999999987655
No 371
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.52 E-value=0.0094 Score=36.28 Aligned_cols=31 Identities=19% Similarity=0.604 Sum_probs=26.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccC
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQE 145 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~ 145 (490)
..|..++|+|..| ++|.++.||.|.++.+..
T Consensus 12 ~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMD--LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCC--EEEEEECCCeEEEEECCC
Confidence 5699999998554 999999999999999843
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.43 E-value=0.64 Score=41.66 Aligned_cols=124 Identities=7% Similarity=0.108 Sum_probs=66.6
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCc-----cCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN-----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
..+.+++|. ++.++.|......+.|+.+. ....+.+..... ......++..+... ++ .+|++ .|..-.
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~--~~~~g~ 211 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSKGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLC--YDNIGV 211 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCCceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEE--ecceEE
Confidence 677888888 56777774555788898843 333332111100 01112334444443 33 45553 233334
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeec
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
+.|.. |+......-.|. ....++++. ..||++-.++.|.||++.+ ++.++++....
T Consensus 212 fv~~~-G~~~r~~~i~W~---------------~~p~~~~~~--~pyli~~~~~~iEV~~~~~-~~lvQ~i~~~~ 267 (275)
T PF00780_consen 212 FVNKN-GEPSRKSTIQWS---------------SAPQSVAYS--SPYLIAFSSNSIEVRSLET-GELVQTIPLPN 267 (275)
T ss_pred EEcCC-CCcCcccEEEcC---------------CchhEEEEE--CCEEEEECCCEEEEEECcC-CcEEEEEECCC
Confidence 44443 332211111221 234566664 4688887777899999997 88888887544
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.86 Score=43.06 Aligned_cols=225 Identities=10% Similarity=0.069 Sum_probs=132.8
Q ss_pred cCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c
Q 011257 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (490)
Q Consensus 174 ~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (490)
+..++.++.+.. ..+....++.+.+.| ... .........+. ....++++++++.+..+ .
T Consensus 76 p~~i~v~~~~~~-----------vyv~~~~~~~v~vid----~~~---~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~ 135 (381)
T COG3391 76 PAGVAVNPAGNK-----------VYVTTGDSNTVSVID----TAT---NTVLGSIPVGL--GPVGLAVDPDGKYVYVANA 135 (381)
T ss_pred ccceeeCCCCCe-----------EEEecCCCCeEEEEc----Ccc---cceeeEeeecc--CCceEEECCCCCEEEEEec
Confidence 345677777763 334444567788766 111 11111111222 55689999999888886 3
Q ss_pred ---CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc-cccceeccc
Q 011257 253 ---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD-THSKLFEEQ 328 (490)
Q Consensus 253 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~ 328 (490)
++.+.+.|..+...... . ..+ ..+ ..++++|+|...+++-..++.|.+.|........ .........
T Consensus 136 ~~~~~~vsvid~~t~~~~~~-~------~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~ 206 (381)
T COG3391 136 GNGNNTVSVIDAATNKVTAT-I------PVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG 206 (381)
T ss_pred ccCCceEEEEeCCCCeEEEE-E------ecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC
Confidence 57888888774443332 2 111 123 8899999994455555679999999977654320 000001111
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEEcC----CeEEEEeccCCCCceee-eeeeccccccccccccCCCccceee
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
..-..+.++|+|.++....+ +.+...|..+ +..... ...... . -..
T Consensus 207 -------------~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~-~--------------~~~ 257 (381)
T COG3391 207 -------------TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSG-A--------------PRG 257 (381)
T ss_pred -------------CCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccC-C--------------CCc
Confidence 23467899999997776532 5888888875 444333 222221 1 126
Q ss_pred EEEcCCCCEEEEeec-CCeEEEEecCCCceeeeEeccCC---CceEEEEEccCCCCCC
Q 011257 404 CCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRP 457 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~~~ 457 (490)
+.++|+|+++.+... .+.+.+-|..+... ........ ..+..+++.+......
T Consensus 258 v~~~p~g~~~yv~~~~~~~V~vid~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (381)
T COG3391 258 VAVDPAGKAAYVANSQGGTVSVIDGATDRV-VKTGPTGNEALGEPVSIAISPLYDTNY 314 (381)
T ss_pred eeECCCCCEEEEEecCCCeEEEEeCCCCce-eeeecccccccccceeccceeeccccc
Confidence 899999999887754 48899999887655 23333222 2455666666554433
No 374
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.6 Score=40.80 Aligned_cols=180 Identities=9% Similarity=0.113 Sum_probs=100.4
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeec-cccccceeEEEecCCCCEEEEe-cC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DD 253 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-~d 253 (490)
++.|+|+.+ .|++....+.-.++- ...+..+++.. .+ -.....|.+..++++.++- .+
T Consensus 90 ~LTynp~~r------------tLFav~n~p~~iVEl-------t~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 90 SLTYNPDTR------------TLFAVTNKPAAIVEL-------TKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred ceeeCCCcc------------eEEEecCCCceEEEE-------ecCCceEEEecccc-cCChhHeEEecCCEEEEEehhc
Confidence 889999999 566666666555542 11122222211 11 1333467777777777777 79
Q ss_pred CcEEEEEcCCCCceeeeee--cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 254 LRINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
+.+.++.+........... ++...........-.++|.|.+ ..|..+-+..-++||...... ..+..+...
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~------~~l~~~~~~ 222 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSP------SSLSVHASL 222 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCC------ccccccccc
Confidence 9999998875544333221 1111222225567789999998 677777777777777666432 111111111
Q ss_pred CccccccccccceEEEEECCC-CCEEEEEcC-CeEEEEeccCCCCceeeeeeecc
Q 011257 332 GTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~-g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
.+..-..-.-..|.++.|++. +.+|+-+.. +.+.-.|.. +.++..+.-+.+
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g 275 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKG 275 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccC
Confidence 000000001145788889874 445555543 777777776 666666655544
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.34 E-value=0.46 Score=47.38 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=63.6
Q ss_pred eeEEEecCCCCEEEEe-cC-CcEEEEEcCCCCceeeeeecCCCccC-CCCCceEEEEEcCCCCcEEEEEeCCCeEEE---
Q 011257 236 INSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRL--- 309 (490)
Q Consensus 236 v~~i~~~~~~~~l~~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i--- 309 (490)
...-.|+|+|+.+++. +. ..+++.+.....+. ..+........ .....|..+.|+||| ..++... +|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql-~~~~vd~ge~~~~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL-ARTPVDASAVASRVPGPISELQLSRDG-VRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceE-EEEeccCchhhhccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEE
Confidence 6678899999888877 32 23344433222222 21111111111 235679999999999 6655544 477776
Q ss_pred EeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
-....+.........+.. +-...+.++.|.+++.+++...++.-.+|.+.-
T Consensus 476 vr~~~G~~~l~~~~~l~~-----------~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 476 EQTEDGQYALTNPREVGP-----------GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred EeCCCCceeecccEEeec-----------ccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 333333211000111111 111335789999999866554443344555543
No 376
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.22 E-value=0.21 Score=42.49 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=78.4
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEe
Q 011257 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD 368 (490)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd 368 (490)
..++...+++.|+..+.+.--|..+|.+.++.+- + ..|.+-+.- -|.+++.|.. |.+++.+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il---g--------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL---G--------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh---C--------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 3455557889999999999999999986543211 1 122222221 4677888865 9999999
Q ss_pred ccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.++ +.....+....... ......+++.++..|+.|+..+..|.++..+
T Consensus 80 ~~t-Gs~~w~f~~~~~vk---------------~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 80 VKT-GSQIWNFVILETVK---------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred ecc-hhheeeeeehhhhc---------------cceEEcCCCceEEEecCCCcEEEecccccce
Confidence 998 77777776555432 1556778999999999999999999988766
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.20 E-value=1.1 Score=41.86 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=66.2
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc--CCCCcEEEEEeCCCeEEEEeC-CCccccccccceeccc
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQ 328 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~ 328 (490)
....+.+||+. ..+..+.+++ ......+..+.|. |+...-|+.+.-...|..|-- ..++-..+.+..+...
T Consensus 220 yG~~l~vWD~~-~r~~~Q~idL-----g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 220 YGHSLHVWDWS-TRKLLQTIDL-----GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp S--EEEEEETT-TTEEEEEEES------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred ccCeEEEEECC-CCcEeeEEec-----CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 45789999998 5556666543 2222345566664 444334555555555555433 3332111111112111
Q ss_pred c-----CCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeecccc-cccccc-ccCCCcc
Q 011257 329 E-----APGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLR-PKLCDL-YENDSIF 399 (490)
Q Consensus 329 ~-----~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 399 (490)
. .+.-..-+..-..-|+.|..|.|.++|..+. .|.|+.||+..+..+..+-+..-+.. .+.... .....+.
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 0 0000000111124589999999999999875 49999999987666655444332211 000000 0000010
Q ss_pred -ceeeEEEcCCCCEEEEee
Q 011257 400 -DKFECCLSGDGGRVATGS 417 (490)
Q Consensus 400 -~v~~~~~s~d~~~l~s~~ 417 (490)
+.-.+..|.||+.|...+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 112678889999876543
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.10 E-value=0.74 Score=45.94 Aligned_cols=114 Identities=10% Similarity=0.123 Sum_probs=55.4
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCC
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~ 254 (490)
..+.|||||+. ++... ++.|.+=-|.............+.+..+-...+.++.|..++.+++...++
T Consensus 451 ssl~wSpDG~R------------iA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~ 517 (591)
T PRK13616 451 SELQLSRDGVR------------AAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP 517 (591)
T ss_pred CeEEECCCCCE------------EEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence 38899999994 22211 355555332222222111111111212233345789999999866444444
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEE
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 309 (490)
.-.+|.+.-.+.....+ .-.....++..++-+++ .++....+|.+.+
T Consensus 518 ~~~v~~v~vDG~~~~~~-----~~~n~~~~v~~vaa~~~---~iyv~~~~g~~~l 564 (591)
T PRK13616 518 EHPVWYVNLDGSNSDAL-----PSRNLSAPVVAVAASPS---TVYVTDARAVLQL 564 (591)
T ss_pred CCceEEEecCCcccccc-----CCCCccCceEEEecCCc---eEEEEcCCceEEe
Confidence 44455544333221110 01123566777777763 3445566664443
No 379
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.99 E-value=0.55 Score=41.39 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=90.7
Q ss_pred ceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe-
Q 011257 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 311 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd- 311 (490)
.+.+.+++++++.++.. .++.-.+|-.......... +. ...+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------LT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------cc--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 57889999999987764 2555555544433333221 11 2367788999998 7777766666666663
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc----CCeEEEEeccCCCCc-eeeeeeecccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 386 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~----d~~i~iwd~~~~~~~-~~~~~~~~~~~ 386 (490)
...+... ......... ...|.++.+||||..++.-. ++.|.+=-+..+..- ...+.......
T Consensus 95 ~~~g~~~---~~~v~~~~~----------~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGE---PVEVDWPGL----------RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcce---eEEeccccc----------CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 3333221 011111110 02799999999999888632 478887766432211 11111111000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecC-CeEEE-EecC
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-NLFRV-FGCS 428 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~v-w~~~ 428 (490)
......+.++.|.+++.+++.+... +.+.. ....
T Consensus 162 --------~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d 197 (253)
T PF10647_consen 162 --------PPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD 197 (253)
T ss_pred --------ccccCcceeeeecCCCEEEEEeCCCCCceeEEEEcc
Confidence 0011235699999999987766643 33333 4444
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=0.024 Score=47.07 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=41.9
Q ss_pred CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEE-cCCCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 245 ~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
+..+++| .+|.|++|.....+.....+ ......+-++.- ..++ .+..++..||.||.|++.-++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-------CSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-------hcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 5567777 89999999987444433221 112333333322 2333 5889999999999999887653
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.85 E-value=2.6 Score=43.16 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=54.5
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCC-C---------c--eeeeeecCCCcc-CCCCCceEEEEEcCCC--CcEE
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEIS-N---------Q--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 298 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~v~~~~~~p~~--~~~l 298 (490)
..|..+.++|+|..++......|.+..+... + . ..+.+.+....+ ..+...|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5688899999999998874444555555321 0 1 111222221122 2345688999999974 2788
Q ss_pred EEEeCCCeEEEEeCCCcc
Q 011257 299 AYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 299 ~~~~~dg~i~iwd~~~~~ 316 (490)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 889999999999997643
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.02 Score=58.06 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
.+-.++.|++ |.+-..|+...-.+ .|.+. ....+|++++|+.+|++++.|-.+|.|.+||...+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP-----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch-----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 3567888876 99998888741111 11111 11224779999999999999999999999999988
Q ss_pred ceeeeEeccCCCceEEEEEccCC--CCCCCCccCcceec
Q 011257 431 SAESTTLEASKNPMRRQVQTPSR--PSRPLGSLSGVVRR 467 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~sp~~--~~~~~~~~~~~~~~ 467 (490)
+. ++.+..|..|...+.++--. ...+..+..+|..|
T Consensus 163 k~-l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 163 KI-LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFW 200 (1206)
T ss_pred cc-eeeeeecCCccceEEEEEEeCCCcEEEEccCCCceE
Confidence 76 68888888888887666322 22344444444333
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.68 E-value=2.1 Score=41.04 Aligned_cols=115 Identities=15% Similarity=0.232 Sum_probs=67.1
Q ss_pred ceeEEEecCCCCEEEEe-c-CC----cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC---
Q 011257 235 HINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--- 305 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~-d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--- 305 (490)
.+..++++|+++++|.+ + .| .++++|+.++......+ . ......+.|.+++ ..|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------~--~~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------E--NPKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------E--EEESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------c--ccccceEEEeCCC-CEEEEEEeCcccc
Confidence 34467899999999986 2 33 59999998653332211 1 1112349999998 5554443322
Q ss_pred --------eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE--c--C-CeEEEEeccC
Q 011257 306 --------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINM 371 (490)
Q Consensus 306 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~--d-~~i~iwd~~~ 371 (490)
.|+.|++.+...... ..|...... .....+..++|+++|+.. + + ..+.+.|+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~--lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDE--LVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-E--EEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHhCe--eEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 377888877643211 233333210 125678899999998863 2 3 4677777774
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.63 E-value=0.67 Score=45.91 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=69.0
Q ss_pred EEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc--CCCCcEEEEEeCCCeEEEEeCC-
Q 011257 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDMR- 313 (490)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~iwd~~- 313 (490)
-+.-+.-++..+.- +...+.+||.+.....++. .+ ...+.|.++.|. |++ +.+++.+....|.+|--.
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccc
Confidence 34444445444444 5778999999855432221 22 447789999885 677 777777888888888542
Q ss_pred ----CccccccccceeccccCCCccccccccc-cceEEEEECCCCCEEEEEcCCeEEEEecc
Q 011257 314 ----QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 314 ----~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
.......+++.+... .|+ .+|.+..|.++|.+++ |+.+.+.|+|-.
T Consensus 106 ~dy~~~~p~w~~i~~i~i~----------~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~ 156 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDIS----------SHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW 156 (631)
T ss_pred hhhhcCCcccceeEEEEee----------cCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence 111112222222211 122 4688999999986555 444688888754
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=1.7 Score=39.40 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=56.4
Q ss_pred CCCceEEEEEcCCCCcEEEEEeC-CCeEEEEeCCC--ccccccccceeccccCCCccccccccccceEEEEECCCCCEEE
Q 011257 281 LTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (490)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~ 357 (490)
+-...+.++||||+ +.|+.+.. .+.|.-|++.. +..-.+....+. ....+..-.++...+|.+.+
T Consensus 161 ~~~~~NGla~SpDg-~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~-----------~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 161 DLTIPNGLAFSPDG-KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF-----------DEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred cEEecCceEECCCC-CEEEEEeCCCCeEEEEecCcccCccCCcceEEEc-----------cCCCCCCCceEEeCCCCEEE
Confidence 34456789999999 56655544 58888888763 211110001111 11124556778888898886
Q ss_pred EE-cC-CeEEEEeccCCCCceeeeeeecc
Q 011257 358 SR-DY-MTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 358 sg-~d-~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
++ .. +.|.+|+.+ ++++..+.....
T Consensus 229 ~a~~~g~~v~~~~pd--G~l~~~i~lP~~ 255 (307)
T COG3386 229 AAVWGGGRVVRFNPD--GKLLGEIKLPVK 255 (307)
T ss_pred ecccCCceEEEECCC--CcEEEEEECCCC
Confidence 55 33 499999997 788888776643
No 386
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=0.31 Score=50.30 Aligned_cols=152 Identities=13% Similarity=0.025 Sum_probs=91.4
Q ss_pred ceeEEEecCCCCEEEEe---cCCcEEEEEcCCCCceee--eeecCC-CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 235 HINSISNNSDGETFISA---DDLRINLWNLEISNQSFN--IVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~---~d~~i~~wd~~~~~~~~~--~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
.+..+...+|+...++. .+-.|..||++.-..... ...++- +..........++.|+|.-+...+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44556666776665553 455788999874322110 000000 011222344568899998767788888999998
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccc
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (490)
+..+...... ...+... ...++++|+|.|+.++.|.. |++.-|... .+....+......
T Consensus 182 V~~~~~~~~~---v~s~p~t-------------~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~-- 241 (1405)
T KOG3630|consen 182 VKSTKQLAQN---VTSFPVT-------------NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE-- 241 (1405)
T ss_pred hhhhhhhhhh---hcccCcc-------------cceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC--
Confidence 8876543211 1122211 56899999999999999965 999888765 3333333222211
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEE
Q 011257 388 KLCDLYENDSIFDKFECCLSGDGGRVAT 415 (490)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s 415 (490)
..+.|.+++|-....+|++
T Consensus 242 ---------e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 242 ---------ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ---------CCcceeEEEEecceeEEEE
Confidence 1234779999888777764
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.57 E-value=1.7 Score=39.16 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=79.0
Q ss_pred cccceeEEEecCCCCEEEEecCC-cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 232 HDYHINSISNNSDGETFISADDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
-...+..+..+++|++++++..| ...-||.... ..... -..-...|..|.|.|++ .+.+. ...|.|++=
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~------~r~~~~riq~~gf~~~~-~lw~~-~~Gg~~~~s 212 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPH------NRNSSRRIQSMGFSPDG-NLWML-ARGGQIQFS 212 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEE------E--SSS-EEEEEE-TTS--EEEE-ETTTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEE------ccCccceehhceecCCC-CEEEE-eCCcEEEEc
Confidence 33667888889999999999544 4457775422 12211 12246789999999998 55554 489999887
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
+.... ...+..+..+... -.-.+..++|.+++...++|..|.+ +...+. ++.-+..+.......
T Consensus 213 ~~~~~------~~~w~~~~~~~~~-----~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~Dg-GktW~~~~~~~~~~~--- 276 (302)
T PF14870_consen 213 DDPDD------GETWSEPIIPIKT-----NGYGILDLAYRPPNEIWAVGGSGTL-LVSTDG-GKTWQKDRVGENVPS--- 276 (302)
T ss_dssp E-TTE------EEEE---B-TTSS-------S-EEEEEESSSS-EEEEESTT-E-EEESST-TSS-EE-GGGTTSSS---
T ss_pred cCCCC------ccccccccCCccc-----CceeeEEEEecCCCCEEEEeCCccE-EEeCCC-CccceECccccCCCC---
Confidence 72221 1222221111100 0134889999999999998887754 334442 554444433221110
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
. ...+.|.++.+-++. +.+|.|.-|
T Consensus 277 ------n---~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 277 ------N---LYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp ------------EEEEEETTEEEEE--STTEEEEE
T ss_pred ------c---eEEEEEcCCCceEEE-CCCcEEEEe
Confidence 1 237888765454444 567877554
No 388
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.43 E-value=0.46 Score=48.32 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=56.4
Q ss_pred cceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecc-----ccccccccccCCCccceeeEEEcCC---CCEE
Q 011257 342 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEH-----LRPKLCDLYENDSIFDKFECCLSGD---GGRV 413 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l 413 (490)
-.|..|.++|+|++|+..+...|.|-.+-.....-..+..... ...-...++.......|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4689999999999999866656666655321000011110000 0000011122222234779999997 4789
Q ss_pred EEeecCCeEEEEecCCCceeeeEe
Q 011257 414 ATGSYSNLFRVFGCSEGSAESTTL 437 (490)
Q Consensus 414 ~s~~~dg~i~vw~~~~~~~~~~~~ 437 (490)
+.-+.|+.+|+||+.......+++
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEE
Confidence 999999999999998655433433
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=0.062 Score=44.76 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=63.6
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE-EEECCCCCEEEEE-cCCeEEEEeccCCC
Q 011257 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DYMTLKLWDINMDS 373 (490)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~g~~l~sg-~d~~i~iwd~~~~~ 373 (490)
..+++|+.+|.|.+|....-... ...+.... ..|.+ +.--.++.+..++ .+|.|+.|++.. .
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~---~d~~~s~~------------e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~ 134 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAH---SDRVCSGE------------ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-N 134 (238)
T ss_pred ceEEeecccceEEEecCCccchH---HHhhhccc------------ccceeccccccccceeEEeccCCceeeecccc-C
Confidence 68999999999999987622110 11111110 12222 2222234455555 679999999985 6
Q ss_pred CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEe--ecCCeEEEEecCCC
Q 011257 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEG 430 (490)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~--~~dg~i~vw~~~~~ 430 (490)
+.+.....|.... +.....+..+++|+.+ |.|..++.|++..-
T Consensus 135 k~~g~~g~h~~~~--------------~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 135 KVLGYVGQHNFES--------------GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeeeeccccCCC--------------cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 6666665555211 1245556677778777 78888888888743
No 390
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.27 E-value=1.6 Score=36.89 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=61.9
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEe--CCCcccccc-ccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cC
Q 011257 286 TSAEFHPTHCNMLAYSSSKGSIRLID--MRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY 361 (490)
Q Consensus 286 ~~~~~~p~~~~~l~~~~~dg~i~iwd--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d 361 (490)
..++|+.+...+.++-+.+-+|.-|| ..++..... .+..++..... ++ ..--.++...+|.+.++. +.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~-------e~-~~PDGm~ID~eG~L~Va~~ng 232 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF-------ES-LEPDGMTIDTEGNLYVATFNG 232 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc-------CC-CCCCcceEccCCcEEEEEecC
Confidence 57889888745556667788887787 666643211 01111111000 00 112234456678877776 55
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
++|...|..+ ++.+.++...... |+++||-.-
T Consensus 233 ~~V~~~dp~t-GK~L~eiklPt~q---------------itsccFgGk 264 (310)
T KOG4499|consen 233 GTVQKVDPTT-GKILLEIKLPTPQ---------------ITSCCFGGK 264 (310)
T ss_pred cEEEEECCCC-CcEEEEEEcCCCc---------------eEEEEecCC
Confidence 9999999998 9999988877554 569999653
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.26 E-value=1.9 Score=37.83 Aligned_cols=175 Identities=9% Similarity=0.086 Sum_probs=101.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.++.|+|+. +.|++......-.+|=...|++........- .-+-.+.|..+|+
T Consensus 86 ~nvS~LTynp~~--rtLFav~n~p~~iVElt~~GdlirtiPL~g~--------------~DpE~Ieyig~n~-------- 141 (316)
T COG3204 86 ANVSSLTYNPDT--RTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--------------SDPETIEYIGGNQ-------- 141 (316)
T ss_pred ccccceeeCCCc--ceEEEecCCCceEEEEecCCceEEEeccccc--------------CChhHeEEecCCE--------
Confidence 559999999844 3566665555555665556666665544321 1122667777777
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeee-cccc-ccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
++++--.+..+.++.+.............-.+ ...+ ......++|.|..+.|..+ +..-+.+|.+........
T Consensus 142 ----fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 142 ----FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred ----EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 66777777777776633322221111111010 0122 5567789999999888888 777777777663332221
Q ss_pred eeecCCCcc--CCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc
Q 011257 270 IVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 270 ~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (490)
.-.....+. .-.-..|.++.|++....+++-+.+++.+.-.|....
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 110000000 0112456788898766578888888888888886643
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.13 E-value=0.1 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCc
Q 011257 283 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 283 ~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~ 315 (490)
+.+.++.|+|... .+|+.+-.-|.+.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998764 58999989999999999963
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.01 E-value=2.9 Score=38.60 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=38.5
Q ss_pred CCceEEEEEcCC-------CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC
Q 011257 282 TEVITSAEFHPT-------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 282 ~~~v~~~~~~p~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~ 354 (490)
...+..+.|... + .+|++.-..+.|....+..+...... ..+ +......+..+++.|||.
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g-~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~-----------~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRG-DLFVADYGGGRIWRLDLDEDGSVTEE-EEF-----------LGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEEE-EEE-----------CTTSSS-EEEEEEETTSE
T ss_pred ccccCceEEECCccCccccC-cEEEecCCCCEEEEEeeecCCCccce-EEc-----------cccCCCCceEEEEcCCCe
Confidence 355667777643 3 45666555677777777644221110 111 122224789999999998
Q ss_pred EEEEEc-CCeEE
Q 011257 355 HILSRD-YMTLK 365 (490)
Q Consensus 355 ~l~sg~-d~~i~ 365 (490)
++++-+ +|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888754 46653
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.98 E-value=2.5 Score=38.14 Aligned_cols=117 Identities=13% Similarity=0.160 Sum_probs=61.4
Q ss_pred cccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
-...|.+|.|.|++.+.+.+..|.|+.=+.......... .........-.+..++|.+++ ...++|+.. .+ +..
T Consensus 185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~---~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~G-~l-~~S 258 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSE---PIIPIKTNGYGILDLAYRPPN-EIWAVGGSG-TL-LVS 258 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE------B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEE
T ss_pred ccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccc---ccCCcccCceeeEEEEecCCC-CEEEEeCCc-cE-EEe
Confidence 347899999999998888778888888772212212111 000111223447899999987 677766554 33 334
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEE
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iw 367 (490)
...++. .+....... -...+..+.|.++.+-++.|.+|.|--|
T Consensus 259 ~DgGkt-W~~~~~~~~------------~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKT-WQKDRVGEN------------VPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSTTSS--EE-GGGTT------------SSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCCcc-ceECccccC------------CCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 444431 111111111 1145788999888889999999887655
No 395
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.84 E-value=1.5 Score=41.22 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=74.5
Q ss_pred CceEEEEEcCCCCcEEEEEe-----------CCC-eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 283 EVITSAEFHPTHCNMLAYSS-----------SKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.....|+|.++| +++++-. ..+ .|.+++-..+.-.......|.... .....+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l------------~~p~Gi~~~ 80 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL------------SMVTGLAVA 80 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC------------CCccceeEe
Confidence 446789999999 7776643 223 677776443221111112222211 345789999
Q ss_pred CCCCEEEEEcCCeEEEEeccCCC----CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec--------
Q 011257 351 RNGRHILSRDYMTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-------- 418 (490)
Q Consensus 351 p~g~~l~sg~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-------- 418 (490)
++| ++++......++.|...++ +....+.+-.... . ..-.....++|.|||.+.++-+.
T Consensus 81 ~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~---~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~ 151 (367)
T TIGR02604 81 VGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQI-----N---NHHHSLNSLAWGPDGWLYFNHGNTLASKVTR 151 (367)
T ss_pred cCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----C---cccccccCceECCCCCEEEecccCCCceecc
Confidence 998 5554333333344554211 1111111110000 0 00001237899999987665442
Q ss_pred -----------CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 419 -----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 419 -----------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
.|.|.-++..+++.. ..-.+ -.....++|+|+|...
T Consensus 152 ~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 152 PGTSDESRQGLGGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWGDVF 198 (367)
T ss_pred CCCccCcccccCceEEEEecCCCeEE-EEecC-cCCCccceECCCCCEE
Confidence 144666666655432 22223 2335678999988653
No 396
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.32 Score=44.94 Aligned_cols=106 Identities=8% Similarity=0.125 Sum_probs=72.2
Q ss_pred cceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
++|.++.||+|.+.||.- ++++|.+++... .++...+....... . ..|...+|+.+ .-+|..+..|
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~-d~~~l~~~~~ck~k----------~-~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIP-DNSQLEYTQECKTK----------N-ANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCC-CchhhHHHHHhccC----------c-ceeEEEEEecC-eeEEEEecCC
Confidence 689999999999999995 789999999853 22222221111100 0 01457888855 5566555544
Q ss_pred eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+-+|.+...+..++..+.|+-.|+..+|.++.+..++++.
T Consensus 134 -~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 134 -IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred -eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 7888887666556777888888988889888877666643
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.74 E-value=0.12 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.4
Q ss_pred ccEEEEEECCC-C--CEEEEecCCCcEEEEEecC
Q 011257 36 DIISAIEFDKS-G--DHLATGDRGGRVVLFERTD 66 (490)
Q Consensus 36 ~~V~~~~~s~d-g--~~latg~~dg~v~iwd~~~ 66 (490)
++|.++.|||+ + .+||.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899998889999999874
No 398
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.55 E-value=2.4 Score=42.65 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=50.2
Q ss_pred cceeEEEec--CCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCC--Cc---EEEEEeCCC
Q 011257 234 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG 305 (490)
Q Consensus 234 ~~v~~i~~~--~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~---~l~~~~~dg 305 (490)
..+++++++ ...+++|++ ....|.||-........... .-..+...|-+|.|-++. +. .+++++-.|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-----~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-----PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-----cccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 467889988 788888888 67778877665322211110 112356678899997754 12 788889999
Q ss_pred eEEEEeC
Q 011257 306 SIRLIDM 312 (490)
Q Consensus 306 ~i~iwd~ 312 (490)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9998887
No 399
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.47 E-value=0.059 Score=53.78 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=79.6
Q ss_pred CCCcEEEeeeecccccccccceeeeeccccccceeEEEecC---CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCcc
Q 011257 203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 278 (490)
Q Consensus 203 ~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~ 278 (490)
.-|.+.+|++ ...++.......-+........+.-+.|.| +.-++..+ .++.+++..+.+..+. + +
T Consensus 151 ~vg~lfVy~v-d~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--l-------~ 220 (1283)
T KOG1916|consen 151 LVGELFVYDV-DVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--L-------F 220 (1283)
T ss_pred Hhhhhheeeh-HhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH--H-------H
Confidence 3467788883 223332222211111122223344455544 45556666 7889998877644331 1 2
Q ss_pred CCCCCceEEE-----------EEcCCCCcEEEEEeCCCeEEEEeCCC-ccccccccceeccccCCCccccccccccceEE
Q 011257 279 EDLTEVITSA-----------EFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 279 ~~~~~~v~~~-----------~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
.+|...+..+ ..+||| ..|+++..||.+++|.+.- ++...+.+..++.|... ++..+..|...+..
T Consensus 221 rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~-p~vC~lc~~~~~~~ 298 (1283)
T KOG1916|consen 221 RSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH-PRVCWLCHKQEILV 298 (1283)
T ss_pred HhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC-CceeeeeccccccC
Confidence 3354444332 368999 9999999999999988652 33222223444444321 11000011111111
Q ss_pred EEECCCCCEEEEEcC--CeEEEEeccCCCCce
Q 011257 347 IKFARNGRHILSRDY--MTLKLWDINMDSGPV 376 (490)
Q Consensus 347 l~~sp~g~~l~sg~d--~~i~iwd~~~~~~~~ 376 (490)
+... --.++++++| ..+++|.-.. .+++
T Consensus 299 v~i~-~w~~~Itttd~nre~k~w~~a~-w~Cl 328 (1283)
T KOG1916|consen 299 VSIG-KWVLRITTTDVNREEKFWAEAP-WQCL 328 (1283)
T ss_pred Cccc-eeEEEEecccCCcceeEeeccc-hhhh
Confidence 1110 1134556666 7789998764 4444
No 400
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.39 E-value=5 Score=38.48 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=37.8
Q ss_pred cceeEEEecCCCCEEEEec-CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC
Q 011257 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 293 (490)
...+.|+|.|++++|++-. .|.|++++...... .....+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCC
Confidence 4567899999999888874 79999998653321 11111111111113677899999987
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.33 E-value=2 Score=41.47 Aligned_cols=158 Identities=10% Similarity=0.011 Sum_probs=83.2
Q ss_pred cceeEEEecCCCCEEEEe---cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCC---cEEEEEeCCCeE
Q 011257 234 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSI 307 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i 307 (490)
.++..++|..-.+.+++. .+|.+++=|-. .-+.-+.|..+.|.|-+. ..+++.-....|
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---------------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---------------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc---------------EeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 467788886444444443 24444443332 123346689999998531 244555667789
Q ss_pred EEEeCCCccccc-cccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccc
Q 011257 308 RLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 308 ~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
.+|.+....... +.+..-.. +...+. .---..+.|+|....|+.-. ...-.+++++.++..++.--...+.
T Consensus 85 tVWqL~~s~~e~~K~l~sQtc-Ei~e~~------pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~ 157 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTC-EIREPF------PVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGL 157 (671)
T ss_pred EEEEeccCccccccceeeeee-eccCCc------ccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCce
Confidence 999987321110 00000000 000000 00124467999888887643 2333456665434443322222222
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEEEEecC
Q 011257 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCS 428 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~ 428 (490)
|.+.||.+||+.|+++-. .=.-++||-.
T Consensus 158 ---------------IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 158 ---------------IHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ---------------EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 459999999998765543 3356788854
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.00 E-value=4.5 Score=40.82 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CCEEEEecCCcEEEEEcCCCCceee-----eeecCCCcc---------CCCCCceEEEEEcCC-CCcEEEEEeCCCeEEE
Q 011257 245 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANM---------EDLTEVITSAEFHPT-HCNMLAYSSSKGSIRL 309 (490)
Q Consensus 245 ~~~l~~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~~---------~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i 309 (490)
..+++.+..+.|.+|+.....+... .+..++... ......|+-|....- +...|+.|..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 6778888888999999874433211 011111000 001223444444321 2268999999999999
Q ss_pred EeCCCccccccccceecc-------ccCCCccccccccccceEEEEEC--CCCCEEEEEcC-CeEEEEeccCCCCceeee
Q 011257 310 IDMRQSALCDTHSKLFEE-------QEAPGTRSFFTEIIASISDIKFA--RNGRHILSRDY-MTLKLWDINMDSGPVATF 379 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~i~~l~~s--p~g~~l~sg~d-~~i~iwd~~~~~~~~~~~ 379 (490)
|.+.+-... +..... .....+. +...-...+++++++ ...++||+++. ..|.||-...........
T Consensus 129 Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 129 YYTETIIEA---IERFSEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEHHHHHHH---HHhhccccccccccccCCCC-eEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 976431000 000100 0000000 111122478999998 78889998876 788887665311111111
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCC---C---EEEEeecCCeEEEEec
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G---RVATGSYSNLFRVFGC 427 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~---~l~s~~~dg~i~vw~~ 427 (490)
..+... . .|-+++|-++. . +|++++-.|.+.+|++
T Consensus 205 ~s~~~~----------h---NIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHS----------H---NIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccc----------c---CCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111100 0 13378887643 2 7888889999999888
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.91 E-value=9.1 Score=39.66 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=91.4
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE-EEEecCCcEEEEEcCCCCceeeeeecCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISADDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
+|+++..||.+..+.+.. ... ......+.. -| ..++.--.|+..++. +.+++|.-.-+|.-+ ....+.-+..+.
T Consensus 597 yLlvalgdG~l~~fv~d~-~tg-~lsd~Kk~~-lG-t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~ke 671 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDI-NTG-QLSDRKKVT-LG-TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKE 671 (1096)
T ss_pred EEEEEcCCceEEEEEEEc-ccc-eEccccccc-cC-CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHH
Confidence 899999999998776222 111 111111111 11 123333345554443 444477777777655 443433221110
Q ss_pred CccCCCCCceEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC
Q 011257 276 ANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~ 354 (490)
-.|- ..|+ +..+..++.+ ..+.+++.-+..-+.. +++++..+ ...+.+++.+...
T Consensus 672 ---v~~~-----c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl--~irtvpl~-------------~~prrI~~q~~sl 727 (1096)
T KOG1897|consen 672 ---VNHM-----CPFNSDAYPDSLASA-NGGALTIGTIDEIQKL--HIRTVPLG-------------ESPRRICYQESSL 727 (1096)
T ss_pred ---hhhh-----cccccccCCceEEEe-cCCceEEEEecchhhc--ceeeecCC-------------CChhheEecccce
Confidence 0011 1122 2221334444 4445666655542211 23444443 2456667766444
Q ss_pred EEEEEcC---------------CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC-CCEEEEeec
Q 011257 355 HILSRDY---------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSY 418 (490)
Q Consensus 355 ~l~sg~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~ 418 (490)
.+++.++ ..++++|-++ ...+..|.... .+....+.++.|..| +.++++|+.
T Consensus 728 ~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT----f~vl~~hef~~--------~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 728 TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT----FEVLSSHEFER--------NETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred EEEEEecccccchhhcCCcceEEEEEEecCCc----eeEEeeccccc--------cceeeeeeeeeecCCCceEEEEEEE
Confidence 4433211 2345555443 33333333221 122233557789988 677777763
Q ss_pred ----------CCeEEEEecCCC
Q 011257 419 ----------SNLFRVFGCSEG 430 (490)
Q Consensus 419 ----------dg~i~vw~~~~~ 430 (490)
.|.|.|+....+
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~ 817 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEEL 817 (1096)
T ss_pred eeccCCCCcccceEEEEEEecC
Confidence 478888888873
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.86 E-value=2.3 Score=42.38 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC--CCCCEEEE-Ec
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--RNGRHILS-RD 360 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s--p~g~~l~s-g~ 360 (490)
.+.-+.-+.-+ +..++-+...++.|||.+.+.... -..|..+ +.|.++.|. |||+.+++ |-
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~--~~~f~~~-------------~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEY--EESFSED-------------DPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEE--eeeecCC-------------CceeeceeeecCCCCEEEEEEc
Confidence 34445555554 444444455679999999875321 1233222 679999986 58887776 65
Q ss_pred CCeEEEEeccC-----C---CCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 361 YMTLKLWDINM-----D---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 361 d~~i~iwd~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
.+.|.+|--.. . -.++..+...... ..+|.+..|.++|.+++.++ +.+.|++-.
T Consensus 95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T------------~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHT------------PHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CcEEEEEEccchhhhcCCcccceeEEEEeecCC------------CCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 68888875421 0 1122222221110 11245899999998776543 578888743
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.70 E-value=3.9 Score=34.67 Aligned_cols=98 Identities=4% Similarity=0.035 Sum_probs=65.5
Q ss_pred eEEEEECCCCCEEEEEc--CCeEEEEeccCC-C-----CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 011257 344 ISDIKFARNGRHILSRD--YMTLKLWDINMD-S-----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 415 (490)
-+.++|+.+.+.+..-+ +-+|.-||.+.+ + +.+..++....... ... -.+++..+|++.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~---------~~P--DGm~ID~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES---------LEP--DGMTIDTEGNLYVA 228 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC---------CCC--CcceEccCCcEEEE
Confidence 36788998888777643 467777885431 2 22222222111000 000 14566778888888
Q ss_pred eecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCC
Q 011257 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 416 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
.-..++|.-.|..+|+. +..++.....+++++|-...
T Consensus 229 ~~ng~~V~~~dp~tGK~-L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTGKI-LLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred EecCcEEEEECCCCCcE-EEEEEcCCCceEEEEecCCC
Confidence 88889999999999988 68888889999999998653
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.69 E-value=2.8 Score=39.39 Aligned_cols=66 Identities=6% Similarity=0.102 Sum_probs=33.2
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCC----ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISN----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
....+++.+++ ++++......++.|..... +...++..-+..-..+......++|.|+| .+.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 45788899988 5554444433344554221 11112111000001123457789999999 6655444
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.42 E-value=5.9 Score=38.50 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=44.4
Q ss_pred EEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc
Q 011257 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (490)
.+.|+|....|+.- ....=.++++......... + + ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-D-----i-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-D-----I-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEE-e-----c-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 45688887777664 3222234555533332221 1 1 246779999999999666666666667789996654
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.16 E-value=10 Score=37.99 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=16.8
Q ss_pred CCCCCEEEEecCCC------cEEEEEecCCC
Q 011257 44 DKSGDHLATGDRGG------RVVLFERTDTR 68 (490)
Q Consensus 44 s~dg~~latg~~dg------~v~iwd~~~~~ 68 (490)
+..+.+++.|+.++ .+..+|..++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~ 312 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE 312 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc
Confidence 44566788888773 57777776654
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=3.9 Score=42.85 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=51.1
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
..+....|+.|++..+ .. ....... ..-...+++++|+|.|+.++.| ..|++.-|... ...... +. .+
T Consensus 170 n~av~l~dlsl~V~~~-~~-----~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~-ip-~P 238 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKST-KQ-----LAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSE-IP-EP 238 (1405)
T ss_pred hhhhhccccchhhhhh-hh-----hhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeec-cc-CC
Confidence 4566777888877541 11 1111111 1223567899999999999999 89999988765 221111 10 01
Q ss_pred CccCCCCCceEEEEEcCCC
Q 011257 276 ANMEDLTEVITSAEFHPTH 294 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~ 294 (490)
.... ...|.++.|-...
T Consensus 239 -p~~e-~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 239 -PVEE-NYRVLSVTWLSTQ 255 (1405)
T ss_pred -CcCC-CcceeEEEEecce
Confidence 1111 5789999998765
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.07 E-value=7.9 Score=36.44 Aligned_cols=213 Identities=12% Similarity=0.015 Sum_probs=86.6
Q ss_pred ccc-cCCCCCcEEEeeeecccccccccceeee---eccccccceeEEEecCCCCEEEEe---c----CCcEEEEEcCCCC
Q 011257 197 SSF-PPGGVSSLRLPVVVTSQETNLVAGCRRI---YAHAHDYHINSISNNSDGETFISA---D----DLRINLWNLEISN 265 (490)
Q Consensus 197 ~l~-~~~~~g~v~iw~~~~~~~~~~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~~~---~----d~~i~~wd~~~~~ 265 (490)
+|+ -+-.++.|.+.|+..........+.+.. ..+.--.....+.--|+|++++++ . .|.+.+.|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 454 4457889999994333322222222111 000000122233445789899884 1 2456677766332
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC--------------------CCeEEEEeCCCcccccccccee
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--------------------KGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
....++. -.+....-..+-|.|.. +.+++... ..++.+||+.+.+. ++++
T Consensus 169 -v~g~We~----~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~----~Q~i 238 (461)
T PF05694_consen 169 -VKGRWEK----DRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL----LQTI 238 (461)
T ss_dssp -EEEE--S----B-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE----EEEE
T ss_pred -ccceecc----CCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE----eeEE
Confidence 2222211 01123334577788877 77777643 35899999998765 3455
Q ss_pred ccccCCCccccccccccceEEEEECC--CCCEEEEEc--CCeEEEEeccCCCCcee--eeeeeccc-----cccc-cccc
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD--YMTLKLWDINMDSGPVA--TFQVHEHL-----RPKL-CDLY 393 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp--~g~~l~sg~--d~~i~iwd~~~~~~~~~--~~~~~~~~-----~~~~-~~~~ 393 (490)
..... ......|.|.. +..+=++|. ..+|..|-....+.--. .+...... .+.+ ..+-
T Consensus 239 dLg~~----------g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 239 DLGEE----------GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp ES-TT----------EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-
T ss_pred ecCCC----------CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccc
Confidence 44321 02355677654 455544442 24444443322132111 11111100 0000 0000
Q ss_pred cCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCc
Q 011257 394 ENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGS 431 (490)
Q Consensus 394 ~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~ 431 (490)
.... =|+++.+|.|.++|...+ .+|.||.||+....
T Consensus 309 ~~P~--LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 309 AVPP--LITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EE--------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cCCC--ceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0001 146899999999998777 48999999998754
No 411
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.90 E-value=9.2 Score=36.71 Aligned_cols=243 Identities=9% Similarity=0.107 Sum_probs=113.1
Q ss_pred EEEEeecCCCcEEEEE-eCc----CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 117 KIRWCQSANSALYLLS-TND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~-~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
...++ +++++++.+ +.. .+++++|+.+++...-. +... ....+.|.++++.
T Consensus 128 ~~~~S--pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~---------------~~~~~~W~~d~~~------ 183 (414)
T PF02897_consen 128 GFSVS--PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENP---------------KFSSVSWSDDGKG------ 183 (414)
T ss_dssp EEEET--TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEE---------------ESEEEEECTTSSE------
T ss_pred eeeEC--CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cccc---------------ccceEEEeCCCCE------
Confidence 44555 477787765 332 46999999999754421 1100 0003899999884
Q ss_pred cCCCCccccCCC----------CCcEEEeeeecccccccccceeeeeccccccc-eeEEEecCCCCEEEEe--c--C-Cc
Q 011257 192 CASNDSSFPPGG----------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFISA--D--D-LR 255 (490)
Q Consensus 192 ~~~~~~l~~~~~----------~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~--~--d-~~ 255 (490)
++.+... ...|..|.+ +... ......+....... ...+..++++++++.. . + ..
T Consensus 184 -----~~y~~~~~~~~~~~~~~~~~v~~~~~--gt~~---~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 184 -----FFYTRFDEDQRTSDSGYPRQVYRHKL--GTPQ---SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp -----EEEEECSTTTSS-CCGCCEEEEEEET--TS-G---GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred -----EEEEEeCcccccccCCCCcEEEEEEC--CCCh---HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 2232211 223555541 1111 11111121112222 5678899999998863 2 3 45
Q ss_pred EEEEEcCCC---CceeeeeecCCCccCCCCCce-EEEEEcCCCCcEEEEEeC---CCeEEEEeCCCccccccccceeccc
Q 011257 256 INLWNLEIS---NQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 256 i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
+.+.++... ......+ ......+ ..+... .+ .+++.... ++.|...++........ ...+..+
T Consensus 254 v~~~d~~~~~~~~~~~~~l-------~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~-~~~l~~~ 323 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLL-------SPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEW-WTVLIPE 323 (414)
T ss_dssp EEEEECCCTTTSS-SEEEE-------EESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGE-EEEEE--
T ss_pred EEEEeccccCCCcCCcEEE-------eCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccc-eeEEcCC
Confidence 777788753 1222221 1122223 233333 33 44444332 35666667666542100 0112111
Q ss_pred cCCCcccccccccc--ceEEEEECCCCCEEEEE--cC--CeEEEEeccCCCCceeeeeeeccccccccccccCCCcccee
Q 011257 329 EAPGTRSFFTEIIA--SISDIKFARNGRHILSR--DY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (490)
Q Consensus 329 ~~~~~~~~~~~h~~--~i~~l~~sp~g~~l~sg--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (490)
.. .+..+.. .+.+|+.. .+ ..|+++++.. +.....+....... |.
T Consensus 324 ------------~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p~~g~--------------v~ 374 (414)
T PF02897_consen 324 ------------DEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLPEAGS--------------VS 374 (414)
T ss_dssp ------------SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSE--------------EE
T ss_pred ------------CCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC-CcEEeeecCCcceE--------------Ee
Confidence 12 3444444 45556553 34 6788888872 33333333222110 22
Q ss_pred eEEEcCCCCEE-EEee---cCCeEEEEecCCCce
Q 011257 403 ECCLSGDGGRV-ATGS---YSNLFRVFGCSEGSA 432 (490)
Q Consensus 403 ~~~~s~d~~~l-~s~~---~dg~i~vw~~~~~~~ 432 (490)
.+...++++.+ ++-+ .-+++..||+.+++.
T Consensus 375 ~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 375 GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44444444433 2222 236799999999876
No 412
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.75 E-value=0.87 Score=39.00 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=52.0
Q ss_pred EcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEec
Q 011257 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (490)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~ 369 (490)
+..++ .++++-+.+|.+++||+.+++....+......-...... -......|..+.++.+|.-|++-++|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 44456 789999999999999999987543321111100000000 002336789999999999888878888899998
Q ss_pred cC
Q 011257 370 NM 371 (490)
Q Consensus 370 ~~ 371 (490)
+.
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 75
No 413
>PHA02713 hypothetical protein; Provisional
Probab=92.14 E-value=8 Score=38.74 Aligned_cols=22 Identities=0% Similarity=0.024 Sum_probs=17.0
Q ss_pred CCCcEEEEEeCCC--eEEEEeCCCc
Q 011257 293 THCNMLAYSSSKG--SIRLIDMRQS 315 (490)
Q Consensus 293 ~~~~~l~~~~~dg--~i~iwd~~~~ 315 (490)
++ .+.++|+.++ .+..||..+.
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CC-EEEEEeeecceeehhhcCcccc
Confidence 45 8999999988 6677777765
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.04 E-value=2.9 Score=38.65 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=37.0
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 293 (490)
..++|+|.|+|++|++-..|.|.+++.. ......+.... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4578999999988887689999999933 33212222111 123445667899999994
No 415
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.95 E-value=18 Score=37.91 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=50.7
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
..-..+.|.++...|+.++...+.++|++.......+ ........|..+.-+|.....+..- ....|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEcc
Confidence 3445788999988999998888999999855442212 1233467799999998843333333 34678888887
Q ss_pred Cc
Q 011257 314 QS 315 (490)
Q Consensus 314 ~~ 315 (490)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 73
No 416
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.87 E-value=3.3 Score=34.00 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=25.7
Q ss_pred cceeEEEEeecC----CCcEEEEEeCcCeEEEEEccC
Q 011257 113 EKINKIRWCQSA----NSALYLLSTNDKTIKLWKVQE 145 (490)
Q Consensus 113 ~~V~~v~~~p~~----~~~~l~~~~~dg~i~lwd~~~ 145 (490)
..|.+++|+|.. .+.+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999932 245677789999999998774
No 417
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.58 E-value=12 Score=34.96 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=67.7
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce-eeeeecC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVK 274 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~-~~~~~~~ 274 (490)
+++....+|.+.-|.+....+.....+..+.+.. ...+..+........|..+ ++.-|.-|+.+..... ...+..
T Consensus 173 ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~- 249 (381)
T PF02333_consen 173 YAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS- 249 (381)
T ss_dssp EEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE-
T ss_pred EEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeec-
Confidence 6778889999999985444444445555665522 3477888888888899999 7777777777633211 122210
Q ss_pred CCccCCCCCceEEEEEc--CCCCcEEE-EEeCCCeEEEEeCCCc
Q 011257 275 PANMEDLTEVITSAEFH--PTHCNMLA-YSSSKGSIRLIDMRQS 315 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~--p~~~~~l~-~~~~dg~i~iwd~~~~ 315 (490)
..-......|-.++.- +++..+|+ +.-.+++..+||....
T Consensus 250 -~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 250 -ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp -BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred -ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 0112234566677664 34323444 4444789999997753
No 418
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.44 E-value=16 Score=36.69 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=34.1
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEec-cCCCceEEEEEccC
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPS 452 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~sp~ 452 (490)
+..+..||+.++|+-=...|.|.+-+.+..++ +..+. .-.++...++|...
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~-lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQI-LCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhh-hhccCCCCCCchHhceeecC
Confidence 34789999999999888999999988876654 33333 11223335666543
No 419
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=7 Score=36.66 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=73.9
Q ss_pred EEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCcc-CCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc
Q 011257 238 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 238 ~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (490)
.+-|....+.+++...|.+.-|-+...+.-..+ .+ ....++|.++.|++|. +.+|.--.+.+|.+++....+
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpi------Sfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPI------SFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCc------eeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 344544455555545566666766533321110 11 1235689999999999 999999999999999975433
Q ss_pred ccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeec
Q 011257 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
.........+.. ...|....|+.. .-+|.-.+.-+.+|........++..+.+.
T Consensus 100 ~~l~~~~~ck~k------------~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 100 SQLEYTQECKTK------------NANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred hhhHHHHHhccC------------cceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence 211101111111 145888899855 666666665677777664344455454444
No 420
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.10 E-value=17 Score=36.05 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCCEEEEeecCCeEEEEecCCCcee
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~ 433 (490)
.+.+++.++.||.++.+|.++|+.+
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEe
Confidence 4557777888999999999999874
No 421
>PHA02713 hypothetical protein; Provisional
Probab=90.82 E-value=11 Score=37.76 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.2
Q ss_pred CCCEEEEeecCC--eEEEEecCCCce
Q 011257 409 DGGRVATGSYSN--LFRVFGCSEGSA 432 (490)
Q Consensus 409 d~~~l~s~~~dg--~i~vw~~~~~~~ 432 (490)
++++.++|+.|| .+..||..+.+-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 788889999888 788888888765
No 422
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.49 E-value=16 Score=34.63 Aligned_cols=155 Identities=8% Similarity=0.074 Sum_probs=82.8
Q ss_pred eeEEEecCCCCEEEEecCCcEE-EEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 236 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 236 v~~i~~~~~~~~l~~~~d~~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
...+..++++.+++.+..|.+. -||-. ....+.+ . ......++.+.+.+++ .+++++ .+|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~-----~-~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH-----N-RASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe-----c-CCCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 3445677888888888555443 34432 1111111 1 1234568899999998 666654 5666543 3333
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccccccccccc
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (490)
++.- . ...|...... .-...+.++.|.+++..+++|..|.+....- .++.-..........
T Consensus 310 G~~~-~-~~~f~~~~~~-------~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLTE-E-DFDFEEADIK-------SRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCcc-c-ccceeecccC-------CCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCC--------
Confidence 3210 0 0012111100 0003588999999999999998887766542 244444433211110
Q ss_pred CCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 395 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
.. ...+.|.++++.+++ +.+|.|.-|
T Consensus 371 -~~---ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 371 -AN---LYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred -cc---eeEEEEcCCCceEEE-eCCcEEEEe
Confidence 11 238888877776665 456776554
No 423
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.59 E-value=30 Score=36.43 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=29.8
Q ss_pred cccccEEEEEECCCC------CEEEEecCCCcEEEEEecCCC
Q 011257 33 QEVDIISAIEFDKSG------DHLATGDRGGRVVLFERTDTR 68 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg------~~latg~~dg~v~iwd~~~~~ 68 (490)
.-...|.|+++.+++ ++++.|+.|+++++..+....
T Consensus 580 tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d 621 (1205)
T KOG1898|consen 580 TLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSD 621 (1205)
T ss_pred eeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcc
Confidence 346789999999876 579999999999999987444
No 424
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.58 E-value=17 Score=33.53 Aligned_cols=181 Identities=13% Similarity=0.155 Sum_probs=90.1
Q ss_pred cceeEEEecC-CCCEEEEecCCc------EEEEEcCCCC---ceeeeeecCCCccCCC--------CCceEEEEEcCCCC
Q 011257 234 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNIVDVKPANMEDL--------TEVITSAEFHPTHC 295 (490)
Q Consensus 234 ~~v~~i~~~~-~~~~l~~~~d~~------i~~wd~~~~~---~~~~~~~~~~~~~~~~--------~~~v~~~~~~p~~~ 295 (490)
+.+..+.+.+ ++.+++.++++. +..+++.... ........ ..+..- ....-++++.+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDM--IPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccc--eeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 5667888885 455555557666 6666655311 11111100 011111 1133477887777
Q ss_pred cEEEEEeCC------CeEEEEeCCCccccccccceeccccCCCccc---cccccccceEEEEECCCCCEEEEE------c
Q 011257 296 NMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS---FFTEIIASISDIKFARNGRHILSR------D 360 (490)
Q Consensus 296 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~i~~l~~sp~g~~l~sg------~ 360 (490)
.++++.-.+ ..|+.++.. ++.. ..+..+....... .-........+++++|||+.|++. .
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 777777777 788888876 5432 2221111000000 111223678999999999955542 1
Q ss_pred CC--e-------EEEEeccC--CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-----ecCCeEEE
Q 011257 361 YM--T-------LKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-----SYSNLFRV 424 (490)
Q Consensus 361 d~--~-------i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-----~~dg~i~v 424 (490)
|+ . ++|+.... .+.+...+...-.... .......|..+.+-+++++|+-= .....++|
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~------~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPP------TAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccc------cccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 32 2 55655543 1223333322221100 00022336689999999987631 12345566
Q ss_pred EecC
Q 011257 425 FGCS 428 (490)
Q Consensus 425 w~~~ 428 (490)
+.+.
T Consensus 246 ~~v~ 249 (326)
T PF13449_consen 246 YRVD 249 (326)
T ss_pred EEEE
Confidence 5544
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.40 E-value=6.6 Score=37.53 Aligned_cols=87 Identities=8% Similarity=0.079 Sum_probs=51.8
Q ss_pred cceEEEEECCCCCEEEE-EcCCeEEEEeccC--------CCCceeeeeeeccccccccccccCCCccceeeEEEcCCC--
Q 011257 342 ASISDIKFARNGRHILS-RDYMTLKLWDINM--------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-- 410 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-- 410 (490)
-.|..+..++.|..++. |.+|.+.++=.+. ++++..+.+.-.- ...+|....--.+..++|+|+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i----~~~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV----AERFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc----cceeeccCCceeeeeccccCCccC
Confidence 35788889999998886 5666655543221 1333222221110 0111211111226688999986
Q ss_pred -CEEEEeecCCeEEEEecCCCce
Q 011257 411 -GRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 411 -~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
..|..-+.|+.||+|++...+.
T Consensus 180 D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CceEEEEecCcEEEEEecCCcch
Confidence 5677788899999999986543
No 426
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.23 E-value=4.4 Score=33.29 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=25.0
Q ss_pred ceeeEEEcCCC------CEEEEeecCCeEEEEecCC
Q 011257 400 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 400 ~v~~~~~s~d~------~~l~s~~~dg~i~vw~~~~ 429 (490)
.|..++|||-| -+|++-+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 46799999964 3789999999999999774
No 427
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.23 E-value=21 Score=34.05 Aligned_cols=156 Identities=13% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeec--
Q 011257 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS-- 123 (490)
Q Consensus 46 dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~-- 123 (490)
+...+++|+..|.++||+....... |+ +.+-..+.+.+|..|..-+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~-----------------~~--------------~lllE~~l~~PILqv~~G~F~s 84 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ-----------------PE--------------DLLLETQLKDPILQVECGKFVS 84 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC-----------------Cc--------------cEEEEEecCCcEEEEEeccccC
Confidence 3458999999999999998543311 11 11112223366777765421
Q ss_pred CCCcEEEEEeCcCeEEEEEccCC----------eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 124 ANSALYLLSTNDKTIKLWKVQEK----------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 124 ~~~~~l~~~~~dg~i~lwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
......++.-.-+.+.+|.+... ++....+++... ....+.+-|=|.. .
T Consensus 85 ~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~--------------~a~nm~~G~Fgg~-------~ 143 (418)
T PF14727_consen 85 GSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQR--------------TAYNMCCGPFGGV-------K 143 (418)
T ss_pred CCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEeccc--------------ceeEEEEEECCCC-------C
Confidence 11223333355677888877321 122233333221 0112333332221 1
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcC
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~ 262 (490)
..+++.+-+.||.+.+++ .+........ .. ---.-.+.+.+....|+++ .+..+..|...
T Consensus 144 ~~~~IcVQS~DG~L~~fe----qe~~~f~~~l----p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 144 GRDFICVQSMDGSLSFFE----QESFAFSRFL----PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CceEEEEEecCceEEEEe----CCcEEEEEEc----CC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 146889999999999998 3332221111 11 1222357788888888888 77888888663
No 428
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.01 E-value=14 Score=31.94 Aligned_cols=109 Identities=10% Similarity=0.053 Sum_probs=68.1
Q ss_pred EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 247 ~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
+++.| ..+.+..-|..++....+.+ ....+-+-+.- -| ++++.|...|.+++.+..+|..+++ |
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~i---------lg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~----f 89 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAI---------LGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWN----F 89 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehh---------hCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheee----e
Confidence 34445 56777777777655544321 12223332222 34 6899999999999999999976532 2
Q ss_pred ccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeec
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
..-.. -. ......+++..+..|+ |++.+..|.++ ...+...+...
T Consensus 90 ~~~~~-----------vk-~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG 135 (354)
T KOG4649|consen 90 VILET-----------VK-VRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGG 135 (354)
T ss_pred eehhh-----------hc-cceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCC
Confidence 21110 11 2234567899999986 69999999987 66666655433
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.80 E-value=5.6 Score=37.66 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=54.9
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce------EEEEECC-CCC
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI------SDIKFAR-NGR 354 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i------~~l~~sp-~g~ 354 (490)
...+.++..+|++ ++.|+...=|+|.++|+.++.. ++.+++..+-.. .++......- ....-.+ ...
T Consensus 307 ~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~v----vrmWKGYRdAqc-~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 307 KREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIV----VRMWKGYRDAQC-GWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred CceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChh----hhhhccCccceE-EEEEeecccccccccccccCCCCcceE
Confidence 4457889999998 8888887889999999998865 466666542100 0000000000 0000000 123
Q ss_pred EEEE-E-cCCeEEEEeccCCCCceeeeee
Q 011257 355 HILS-R-DYMTLKLWDINMDSGPVATFQV 381 (490)
Q Consensus 355 ~l~s-g-~d~~i~iwd~~~~~~~~~~~~~ 381 (490)
+|+. . -.|.|.||+++. +..+..+..
T Consensus 381 ~LvIyaprRg~lEvW~~~~-g~Rv~a~~v 408 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQ-GPRVAAFNV 408 (415)
T ss_pred EEEEEeccCCeEEEEecCC-CCEEEEEEe
Confidence 4443 4 349999999997 777766654
No 430
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.61 E-value=17 Score=32.13 Aligned_cols=160 Identities=10% Similarity=0.107 Sum_probs=83.2
Q ss_pred cEEEEEECCCCCEEEEec---CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 37 IISAIEFDKSGDHLATGD---RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.+.+.++|+||+.+|... ....+.++....... ..+.+ .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------------~~~~g--------------~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------------PVLTG--------------G 66 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------------eeccC--------------C
Confidence 689999999999777655 223455554332221 11122 2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEE-ccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWK-VQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+..-.|.+ ++...+....+...+++. ...+...... ...... .+ ....+.+||||.-+.
T Consensus 67 ~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g~~~~~~-v~~~~~----~~-------~I~~l~vSpDG~RvA----- 127 (253)
T PF10647_consen 67 SLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASGTGEPVE-VDWPGL----RG-------RITALRVSPDGTRVA----- 127 (253)
T ss_pred ccccccccC--CCCEEEEEcCCCceEEEEecCCCcceeEE-eccccc----CC-------ceEEEEECCCCcEEE-----
Confidence 366677876 455555555566666664 2333222211 110000 00 122789999999521
Q ss_pred CCCCccccCCCCCcEEEeeeeccccc-cc-ccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEE
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQET-NL-VAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINL 258 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~ 258 (490)
+++....++.|.+--|....+. .. ....... .......+.+++|.+++.+++.+ .+..+..
T Consensus 128 ----~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 128 ----VVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ----EEEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 2223344566766554444333 11 1111111 12334678899999999888877 3443433
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.38 E-value=9.8 Score=29.27 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=66.2
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCcccc----ccccceeccccCCCccccccccccceEEEEECC-----CCCEEE
Q 011257 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC----DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHIL 357 (490)
Q Consensus 287 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-----~g~~l~ 357 (490)
.-.|.... ..|++++.-|.|.|++....... ...++.+... ..|++|+-.+ +...|+
T Consensus 3 iGkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-------------~~italaaG~l~~~~~~D~Ll 68 (136)
T PF14781_consen 3 IGKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-------------QEITALAAGRLKPDDGRDCLL 68 (136)
T ss_pred EEEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECC-------------CceEEEEEEecCCCCCcCEEE
Confidence 34566666 57888889999999987654321 1112222222 4577775433 456888
Q ss_pred EEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE---cC-CCCEEEEeecCCeEEEEecCCCc
Q 011257 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL---SG-DGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 358 sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~-d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
.|+...+..||+.. ...+.--..+.+. .++.+ .. +..++++| .+..|.-||.+..+
T Consensus 69 iGt~t~llaYDV~~-N~d~Fyke~~DGv----------------n~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 69 IGTQTSLLAYDVEN-NSDLFYKEVPDGV----------------NAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred EeccceEEEEEccc-CchhhhhhCccce----------------eEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 89999999999986 4444333333332 23333 32 23444444 45678888866443
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.25 E-value=2.8 Score=35.88 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=46.9
Q ss_pred ecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccC-------CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 241 ~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
+..++++|++- .+|.+++||+...+..+..+.+.|. +. .....|..+.++.+| .-+++- .+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCCEEEecc
Confidence 44567777776 9999999999965544333222111 11 356778889999888 555554 4578888886
Q ss_pred CC
Q 011257 313 RQ 314 (490)
Q Consensus 313 ~~ 314 (490)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 64
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.02 E-value=0.069 Score=49.60 Aligned_cols=141 Identities=10% Similarity=0.075 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE-Ec
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RD 360 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~ 360 (490)
-.......|.|.+ .-++.++.+..+..||-.. +.. ++... ++....++|.-++..++. +.
T Consensus 34 lv~pi~~~w~~e~-~nlavaca~tiv~~YD~ag-q~~------le~n~-----------tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 34 LVGPIIHRWRPEG-HNLAVACANTIVIYYDKAG-QVI------LELNP-----------TGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred ccccceeeEecCC-CceehhhhhhHHHhhhhhc-cee------cccCC-----------chhHhhhhhccccchhhhhhh
Confidence 3344567788888 5588888888888898543 221 11111 144567888888877766 33
Q ss_pred -CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc
Q 011257 361 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 361 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
.+.+.+||+.+ +--+.+........ .-+.|++....++.+...|.+.|++-.+.+. ......
T Consensus 95 k~~piylwd~n~--eytqqLE~gg~~s~--------------sll~wsKg~~el~ig~~~gn~viynhgtsR~-iiv~Gk 157 (615)
T KOG2247|consen 95 KTGPIYLWDVNS--EYTQQLESGGTSSK--------------SLLAWSKGTPELVIGNNAGNIVIYNHGTSRR-IIVMGK 157 (615)
T ss_pred cCCCeeechhhh--hhHHHHhccCcchH--------------HHHhhccCCccccccccccceEEEeccchhh-hhhhcc
Confidence 48999999985 22222221111110 0257999999999999999999999987765 445555
Q ss_pred CCCceEEEEEccCCCCCCC
Q 011257 440 SKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 440 ~~~~v~~~~~sp~~~~~~~ 458 (490)
|..++.++++.+.+.....
T Consensus 158 h~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 158 HQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred cccceeEEEecccceeeec
Confidence 8899999999987765543
No 434
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.80 E-value=18 Score=31.71 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=99.5
Q ss_pred ccEEEEEECCCCCEEEEecCCC--cEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 36 DIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++... ...+...-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~---------------------~~~l~~~~------------- 90 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ---------------------SVPLPPRY------------- 90 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE---------------------EEE-TTT--------------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE---------------------EEECCccc-------------
Confidence 3455688877887777776655 78899988876320 00011000
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
---.++.. ++..+...=.++...+||..+.+....+..... |+ -...+|+
T Consensus 91 FgEGit~~---~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E-------GW-----------GLt~dg~--------- 140 (264)
T PF05096_consen 91 FGEGITIL---GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE-------GW-----------GLTSDGK--------- 140 (264)
T ss_dssp -EEEEEEE---TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--------------------EEEECSS---------
T ss_pred cceeEEEE---CCEEEEEEecCCeEEEEccccceEEEEEecCCc-------ce-----------EEEcCCC---------
Confidence 00112332 234555566688999999998877666555421 11 1224555
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccc-cccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
.|+.......+.++| .+.....+.......+ .-..++.+.+- +|...|=. ....|...|.. .+.....+
T Consensus 141 ---~Li~SDGS~~L~~~d----P~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~-tG~V~~~i 211 (264)
T PF05096_consen 141 ---RLIMSDGSSRLYFLD----PETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPE-TGKVVGWI 211 (264)
T ss_dssp ---CEEEE-SSSEEEEE-----TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETT-T-BEEEEE
T ss_pred ---EEEEECCccceEEEC----CcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCC-CCeEEEEE
Confidence 566666667777776 1111111111111111 11234555554 56555555 56667777887 44455544
Q ss_pred ecCCC--------ccCCCCCceEEEEEcCCCCcEEEEEe
Q 011257 272 DVKPA--------NMEDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 272 ~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
+.... .......-.+.||+.|...++++||=
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 43210 00112466889999998867777773
No 435
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.48 E-value=31 Score=33.99 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=20.8
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEee
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFD 153 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~ 153 (490)
..++.++.++.+.-.|..+++..-...
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~ 88 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYD 88 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeC
Confidence 467778888999999999987665443
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=5 Score=38.31 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=58.1
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
.-.|..+..++.|..+|-.+.+|.+.++=...-... ......+..+.|-.+.-.-++...- .| -.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~-s~~eDgk~~v~CRt~~i~~~~ftss-~~-------------lt 167 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN-SEFEDGKSTVNCRTTPVAERFFTSS-TS-------------LT 167 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCcc-ceecCCCceEEEEeecccceeeccC-Cc-------------ee
Confidence 457889999999999999999987665431110000 0111111223333332222222211 11 23
Q ss_pred eeEEEEeecC-CCcEEEEEeCcCeEEEEEccCCeE
Q 011257 115 INKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKV 148 (490)
Q Consensus 115 V~~v~~~p~~-~~~~l~~~~~dg~i~lwd~~~~~~ 148 (490)
+..++|+|++ -+..|+.-+.|..||+||+...+.
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 7788999965 135677778899999999987543
No 437
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.04 E-value=20 Score=31.43 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=103.9
Q ss_pred ccceeEEEecCCCCEEEEe---cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEE
Q 011257 233 DYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 309 (490)
..-...+.|..++.++-+. ....|+.+|+.++. .....++.+.. ---.++...+ +++.-.=.++...+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~-~~~~~~l~~~~------FgEGit~~~d--~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK-VLQSVPLPPRY------FGEGITILGD--KLYQLTWKEGTGFV 114 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS-EEEEEE-TTT--------EEEEEEETT--EEEEEESSSSEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc-EEEEEECCccc------cceeEEEECC--EEEEEEecCCeEEE
Confidence 3445678887777777664 35689999999554 33332222111 1123444433 46666667899999
Q ss_pred EeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccc
Q 011257 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (490)
||..+-+.. .++.-. ..=+.++ .|++.|+.++ ...+.++|..+ -+....+.......+
T Consensus 115 yd~~tl~~~----~~~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~p- 173 (264)
T PF05096_consen 115 YDPNTLKKI----GTFPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRP- 173 (264)
T ss_dssp EETTTTEEE----EEEE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE-
T ss_pred EccccceEE----EEEecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEE-
Confidence 999876542 333322 2235565 4566666653 37999999886 677777766543211
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEec---------------cCCCceEEEEEccCC
Q 011257 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------ASKNPMRRQVQTPSR 453 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~---------------~~~~~v~~~~~sp~~ 453 (490)
+..+..+.|- +|...|-.=....|...|..+|+.. ..+. ...+-.+.+|+.|..
T Consensus 174 ---------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 174 ---------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp ------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred ---------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence 1113366665 6777776666778888899988753 2221 013557889998876
Q ss_pred CCC
Q 011257 454 PSR 456 (490)
Q Consensus 454 ~~~ 456 (490)
...
T Consensus 243 ~~l 245 (264)
T PF05096_consen 243 DRL 245 (264)
T ss_dssp TEE
T ss_pred CEE
Confidence 643
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.72 E-value=29 Score=32.92 Aligned_cols=113 Identities=10% Similarity=0.126 Sum_probs=66.7
Q ss_pred ccceeEEEecCCCCEEEEecCCcEEEEEcCCCCc----eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
...+..+.+.+++.+++++..|.+..- ...... .+... ........+..+.|.+++ .. +.++..|.+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~~~-----~~~~~~~~l~~v~~~~d~-~~-~a~G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFEEA-----DIKSRGFGILDVGYRSKK-EA-WAAGGSGILL 351 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccceeec-----ccCCCCcceEEEEEcCCC-cE-EEEECCCcEE
Confidence 356788999999999998877765543 221210 11111 111123458899999887 44 4556777665
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEE
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iw 367 (490)
... ..++. ++..... .........+.|.++++.+++|.+|.|--|
T Consensus 352 ~s~-D~G~t-------W~~~~~~------~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKS-------WKRDKGA------DNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EeC-CCCcc-------eeEcccc------CCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 543 33321 1111000 001145789999988999999999887654
No 439
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.55 E-value=4.1 Score=23.73 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=25.6
Q ss_pred CCCCEEEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEE
Q 011257 408 GDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 408 ~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 449 (490)
|++++|.++. .++.|.++|..+++. +..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~-~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKV-IATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeE-EEEEECC-CCCceEEe
Confidence 5677666555 578999999988766 4455442 23344444
No 440
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.55 E-value=27 Score=35.12 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCcEEEEEeCcC-----eEEEEEccCCeEEEE
Q 011257 125 NSALYLLSTNDK-----TIKLWKVQEKKVKKV 151 (490)
Q Consensus 125 ~~~~l~~~~~dg-----~i~lwd~~~~~~~~~ 151 (490)
+|...++|+.|| ++-.||..+.+....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCccccc
Confidence 577888899886 466777777655443
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.03 E-value=4.1 Score=38.04 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCCCEEEEe-cCCcEEEE-EcCCCCce-eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc
Q 011257 243 SDGETFISA-DDLRINLW-NLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319 (490)
Q Consensus 243 ~~~~~l~~~-~d~~i~~w-d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 319 (490)
..|..+..+ .||.|.-| |++...+. +..+. .+.-...++.-+.-..+. +-|++-+..|++.++.....+..
T Consensus 278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R----~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~l- 351 (733)
T COG4590 278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIR----NFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLL- 351 (733)
T ss_pred hCceeEEEEcCCCceeeeeeeecCCCCcceeee----ccccCcccceeecccccc-ceEEEEcCCCceeeeecccCcce-
Confidence 345566677 78888766 66543321 11110 011111223323222233 56777777887777654443221
Q ss_pred cccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
.++.- ...+.-+++||++.++++-+.|.++++.+++
T Consensus 352 ----L~~~~------------~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 352 ----LFERA------------YQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ----ehhhh------------hcCcceeeeCcccchheeecCCceEEEEecC
Confidence 11111 1346678999999999998889999999986
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=16 Score=39.36 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=51.3
Q ss_pred cceEEEEECCCCCEEEEEcCCeEEEEeccCC------CCceeeeeee----ccccccccccccCCCccceeeEEEcCCCC
Q 011257 342 ASISDIKFARNGRHILSRDYMTLKLWDINMD------SGPVATFQVH----EHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
..|+++....+|+.+++|.|| .+|.+... ++....+... ...++.+..++ .....+|..+++....+
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITIDNSRN 255 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEeccccc
Confidence 468889888899999999887 55655320 1101111000 00111111111 01112356888888888
Q ss_pred EEEEeecCCeEEEEecCC
Q 011257 412 RVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~ 429 (490)
.|.+-++.|+|++|++..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 899999999999999986
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.52 E-value=30 Score=31.91 Aligned_cols=168 Identities=12% Similarity=0.154 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCe------EEEEeCCCccccccccceeccccCCCcc-ccccccccceEEEEECCCCC
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALCDTHSKLFEEQEAPGTR-SFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~l~~sp~g~ 354 (490)
-+.+..+.+.|++ ..+++.+.+|. +...++.........+............ ..+..-..-.-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4567889999766 56676777777 6555555411000000111000000000 00100011345778877888
Q ss_pred EEEEEc-C------CeEEEEeccCCCCceeeeeeeccccccc---cccccCCCccceeeEEEcCCCCEEEEeec-----C
Q 011257 355 HILSRD-Y------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY-----S 419 (490)
Q Consensus 355 ~l~sg~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-----d 419 (490)
++++.. + ..|..++.. +..+..+.......... .....+.-+ -+++++|||+.|.++.+ |
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~---E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGF---EGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCe---EEEEECCCCCEEEEEECccccCC
Confidence 888863 3 566666654 66655553332211100 111122222 38999999996665543 2
Q ss_pred C--e-------EEEEecC--C-Cce---eeeEecc-----CCCceEEEEEccCCCC
Q 011257 420 N--L-------FRVFGCS--E-GSA---ESTTLEA-----SKNPMRRQVQTPSRPS 455 (490)
Q Consensus 420 g--~-------i~vw~~~--~-~~~---~~~~~~~-----~~~~v~~~~~sp~~~~ 455 (490)
+ . ++++.+. + ++. -...+.. ....+..+.+-+++..
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 2 1 5555444 3 211 1122222 3467888888888873
No 444
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.17 E-value=4.5 Score=23.55 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=22.9
Q ss_pred CCCCEEEEEc--CCeEEEEeccCCCCceeeeeee
Q 011257 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 351 p~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
|++++|+++. ++.|.++|..+ ++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECC
Confidence 5778777753 49999999986 7777666653
No 445
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.69 E-value=35 Score=31.96 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=96.3
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccce---eEEEecCCCCE--EEE-e-c-C--CcEEEEEcCCCCc
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI---NSISNNSDGET--FIS-A-D-D--LRINLWNLEISNQ 266 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~--l~~-~-~-d--~~i~~wd~~~~~~ 266 (490)
+++...+++-+.+|| +.+.... .+..+....| ..+.+ .|+. |+. + . + ..|++|.+.....
T Consensus 70 lIigTdK~~GL~VYd-L~Gk~lq-------~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYD-LDGKELQ-------SLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp EEEEEETTTEEEEEE-TTS-EEE-------EE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred eEEEEeCCCCEEEEc-CCCcEEE-------eecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 677777888899999 4433321 1111111111 12222 3333 333 3 2 2 5699998864333
Q ss_pred eeeeeecCCCccCCCCCceEEEEE--cC-CCCcEEEEEeCCCeEEEEeCC---CccccccccceeccccCCCcccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEF--HP-THCNMLAYSSSKGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~--~p-~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (490)
.+..+.-....+......+..+++ +| ++..+++....+|.+..|.+. .+.+..+.++.|...
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~------------ 207 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG------------ 207 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S------------
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC------------
Confidence 333221000011112234667776 34 343456667788988887775 333333445666654
Q ss_pred ccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE--cCCCC-EEEEe
Q 011257 341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGG-RVATG 416 (490)
Q Consensus 341 ~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~-~l~s~ 416 (490)
..+..+.......+|..+. +.-|.-|+.+........+....... .-..+|-.+++ ..+++ ||+..
T Consensus 208 -sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~---------~l~aDvEGlaly~~~~g~gYLivS 277 (381)
T PF02333_consen 208 -SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD---------GLVADVEGLALYYGSDGKGYLIVS 277 (381)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS---------SB-S-EEEEEEEE-CCC-EEEEEE
T ss_pred -CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc---------ccccCccceEEEecCCCCeEEEEE
Confidence 3578888888777888885 46666666653221111111100000 00012334554 33443 55444
Q ss_pred e-cCCeEEEEecCCC
Q 011257 417 S-YSNLFRVFGCSEG 430 (490)
Q Consensus 417 ~-~dg~i~vw~~~~~ 430 (490)
+ .+++..||+.+..
T Consensus 278 sQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 278 SQGDNSFAVYDREGP 292 (381)
T ss_dssp EGGGTEEEEEESSTT
T ss_pred cCCCCeEEEEecCCC
Confidence 4 6889999998753
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.24 E-value=41 Score=32.41 Aligned_cols=98 Identities=22% Similarity=0.255 Sum_probs=59.4
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
++..|.-.|.+..+..+.....+. + .......+..-...| ++|.++..|-|++||--..+. -..++
T Consensus 535 S~~svFrIDPR~~gNKi~v~esKd--Y-~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA----KtalP----- 600 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESKD--Y-KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA----KTALP----- 600 (776)
T ss_pred cccceEEecccccCCceeeeeehh--c-cccccccccccccCc--eEEEecCCCceeeehhhcchh----hhcCc-----
Confidence 555566566665543333322211 0 112233444445555 899999999999999543211 01122
Q ss_pred CccccccccccceEEEEECCCCCEEEEEcCCeEEEEecc
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
+....|..+..+.+|+++++.....+-+-|+.
T Consensus 601 -------~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 601 -------GLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred -------ccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 22267899999999999988776788888775
No 447
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.70 E-value=32 Score=33.23 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=37.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
-...+.|+|.|++ ++|++--..|.|++++-.++... .+..+.... ...-......|+++|+-
T Consensus 29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~--~~~~l~~v~-------~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVK--VVFTLPEIV-------NDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee--eeecCCcee-------ccCCCCceeeEEECCCc
Confidence 3456899999999 77776555799999986544211 011111000 00012678999999874
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=83.55 E-value=37 Score=31.42 Aligned_cols=159 Identities=11% Similarity=0.086 Sum_probs=87.9
Q ss_pred ccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
...+.++.+.+++.+++++..|.+..- .....+..... ...-...++++.+.|++ +.++. +..|.+++=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~------~~~~~~~l~~i~~~~~g-~~~~v-g~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH------QRNSSRRLQSMGFQPDG-NLWML-ARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe------eCCCcccceeeeEcCCC-CEEEE-ecCCEEEEccC
Confidence 356788999999988888877755532 22233333321 12234678899999998 66665 45677653223
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (490)
..+.. +.....+.. .-...+.++.+.|++..+++|.+|.+.. ..+. ++............
T Consensus 243 d~G~s-------W~~~~~~~~-----~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~-G~tW~~~~~~~~~~------ 302 (334)
T PRK13684 243 DDLES-------WSKPIIPEI-----TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDG-GKTWEKDPVGEEVP------ 302 (334)
T ss_pred CCCCc-------cccccCCcc-----ccccceeeEEEcCCCCEEEEcCCCeEEE-eCCC-CCCCeECCcCCCCC------
Confidence 33321 111110000 0013478899999999888888876653 3332 44433332211110
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 393 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
.....+.|..+++.+++ +..|.|.-|+-
T Consensus 303 ------~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 303 ------SNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred ------cceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 01236777766666654 55688877653
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=10 Score=40.72 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=54.3
Q ss_pred ccceeEEEecCCCCEEEEecCCcEEEEEcCCCCc-----eeeeee-------cC--CCccC-CCCCceEEEEEcCCCCcE
Q 011257 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ-----SFNIVD-------VK--PANME-DLTEVITSAEFHPTHCNM 297 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~-----~~~~~~-------~~--~~~~~-~~~~~v~~~~~~p~~~~~ 297 (490)
...|.++....+|+.|.+|.||.++-.-...... +..+-- +- ...+. .+.++|..++..... .+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ce
Confidence 3567888888899999999767444222221110 100000 00 01223 567899999998887 89
Q ss_pred EEEEeCCCeEEEEeCCCc
Q 011257 298 LAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 298 l~~~~~dg~i~iwd~~~~ 315 (490)
+.+-+..|+|.+||+...
T Consensus 257 lY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeccCceEEEEEccCC
Confidence 999999999999999873
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.97 E-value=57 Score=33.14 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=30.5
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeee
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 381 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~ 381 (490)
..+..+..||+.++|+.=. .|.|.+-+.+. .+.+..+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~ 256 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNC 256 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCC
Confidence 4678899999999999864 59999988886 666666653
No 451
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.94 E-value=28 Score=33.57 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=25.2
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
|..++..+..+.|++.+.+|.|.+|++..+
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 568999999999999999999999999853
No 452
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.78 E-value=4.5 Score=23.20 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=19.7
Q ss_pred ccccEEEEEECCCCCEEEEecC-C--CcEEEE
Q 011257 34 EVDIISAIEFDKSGDHLATGDR-G--GRVVLF 62 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~-d--g~v~iw 62 (490)
....-.+..|||||++|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999998887663 3 555555
No 453
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.46 E-value=69 Score=33.72 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=78.6
Q ss_pred ccccceeEEEec---C----CCCEEEEecCCcEEEEEcCCCCc------eeeeeecCC-Ccc---CCCCCceEEEEEcCC
Q 011257 231 AHDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANM---EDLTEVITSAEFHPT 293 (490)
Q Consensus 231 ~~~~~v~~i~~~---~----~~~~l~~~~d~~i~~wd~~~~~~------~~~~~~~~~-~~~---~~~~~~v~~~~~~p~ 293 (490)
.-..+|..|+|. . ...+|++-....+.|+...-... ....++..+ .++ .-...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345788888887 2 22455555667777777321111 000000000 011 112345678999998
Q ss_pred CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 294 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 294 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
....||.....|...|||+............+..... +....-......-..+.|.++-..|+.++...+.++|++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 7789999999999999999322111100011111000 0000000011345678999998899999888999999986
No 454
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.48 E-value=74 Score=33.39 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=49.1
Q ss_pred cceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeecccccccccc----ccCCCccceeeEEEcCCCCEEEEe
Q 011257 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL----YENDSIFDKFECCLSGDGGRVATG 416 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~s~ 416 (490)
..|.++.-..-+.+++.. +||+|.++|..+ -+.+............+..+ +.-.++..+.-++|||++..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 457777776667777766 789999999887 44443331111111111111 111122233468999999999999
Q ss_pred ecCCeEE
Q 011257 417 SYSNLFR 423 (490)
Q Consensus 417 ~~dg~i~ 423 (490)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9998866
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.13 E-value=0.45 Score=44.53 Aligned_cols=141 Identities=10% Similarity=0.080 Sum_probs=89.1
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (490)
...|-+.+. -++.++.+..+..|| ..+ .... ....+.....++|..++..++.- ..
T Consensus 39 ~~~w~~e~~------------nlavaca~tiv~~YD-~ag---q~~l------e~n~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 39 IHRWRPEGH------------NLAVACANTIVIYYD-KAG---QVIL------ELNPTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred eeeEecCCC------------ceehhhhhhHHHhhh-hhc---ceec------ccCCchhHhhhhhccccchhhhhhhcC
Confidence 456677776 577888888888887 111 1110 01223455678888888877764 68
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCC-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCC
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
+.+.+||+.+.... ++ .+.+ +.... ..|++.. ..++.+...|.+.|++..+.+.. ...+
T Consensus 97 ~piylwd~n~eytq-qL------E~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~i-----iv~G----- 156 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQ-QL------ESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRI-----IVMG----- 156 (615)
T ss_pred CCeeechhhhhhHH-HH------hccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhh-----hhhc-----
Confidence 99999999844321 11 1111 22222 7788888 78888889999999998876432 1111
Q ss_pred ccccccccccceEEEEECCCCCEEEEEcCCeE
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSRDYMTL 364 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i 364 (490)
.|...++++++.+.+..+..+.|..+
T Consensus 157 ------kh~RRgtq~av~lEd~vil~dcd~~L 182 (615)
T KOG2247|consen 157 ------KHQRRGTQIAVTLEDYVILCDCDNTL 182 (615)
T ss_pred ------ccccceeEEEecccceeeecCcHHHH
Confidence 14478999999987765554444433
No 456
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.02 E-value=41 Score=30.17 Aligned_cols=241 Identities=12% Similarity=0.088 Sum_probs=117.0
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccc-----cccceeEEEecCCCC----
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-----HDYHINSISNNSDGE---- 246 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~---- 246 (490)
.++++|.+. +-++....+...+||....... -....+...... .....+.+.|+....
T Consensus 27 Gia~~p~~~------------~WVadngT~~~TlYdg~~~~~~-g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt 93 (336)
T TIGR03118 27 GLSYRPGGP------------FWVANTGTGTATLYVGNPDTQP-LVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVS 93 (336)
T ss_pred eeEecCCCC------------EEEecCCcceEEeecCCccccc-CCccceEEEecCCCCCCCCCCccEEEEeCCCceEEc
Confidence 567788776 5666777788888883211100 011111111111 123455666654322
Q ss_pred --------EEEEe-cCCcEEEEEcCCCCc----eeeeeecCCCccCCCCCceEEEEEcC--CCCcEEEEEeCCCeEEEEe
Q 011257 247 --------TFISA-DDLRINLWNLEISNQ----SFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 247 --------~l~~~-~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd 311 (490)
.++.+ +||+|.-|....... ....++- ......-..+++.. .+..+.++--..++|.++|
T Consensus 94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-----s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-----SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEcc-----CCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 23445 899999998642222 1111110 00112223455543 3424555555688999998
Q ss_pred CCCccccccccceeccccCCCccccc--cc--cccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFF--TE--IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
-.-.+... -..|.....|.-...+ +. -.-.|+-..-.++++.=+.|. -|.|.+||+. +..++.+.......
T Consensus 169 ~~f~~~~~--~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LN 244 (336)
T TIGR03118 169 GSFRPPPL--PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGRLN 244 (336)
T ss_pred CccccccC--CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCccc
Confidence 65432110 0112221111000000 00 000122222233333333332 3799999997 88888774333221
Q ss_pred ccccccccCCCccceeeEEEcC------CCCEEEEeecCCeEEEEecCCCceeeeEeccCC------CceEEEEEccC
Q 011257 387 PKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK------NPMRRQVQTPS 452 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~------~~v~~~~~sp~ 452 (490)
. =|.++..| .+.+|+---.||+|..||..+|+.+ -.+.... +..+.++|...
T Consensus 245 a-------------PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~-g~L~~~~G~pi~i~GLWgL~fGng 308 (336)
T TIGR03118 245 A-------------PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL-GQLLDPDNHPVKVDGLWSLTFGNG 308 (336)
T ss_pred C-------------CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee-eeecCCCCCeEEecCeEEeeeCCC
Confidence 0 13555544 3566776557999999999999863 4444332 34566777664
No 457
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.96 E-value=42 Score=30.16 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC------CCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP------THCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
.-|.|.+||.. +....++ .-.+.-...+.|+..| .+ .+|+----||+|..+|..+++.
T Consensus 220 G~G~VdvFd~~-G~l~~r~------as~g~LNaPWG~a~APa~FG~~sg-~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 220 GLGYVNVFTLN-GQLLRRV------ASSGRLNAPWGLAIAPESFGSLSG-ALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred CcceEEEEcCC-CcEEEEe------ccCCcccCCceeeeChhhhCCCCC-CeEEeecCCceeEEecCCCCce
Confidence 44789999987 4433332 2344556678888866 34 5677666799999999988764
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.98 E-value=11 Score=35.41 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=85.4
Q ss_pred ccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceee-eeecCCCccCC-CCCceE-EEEEcCCCCcEEEEEeCCCeEEE
Q 011257 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-IVDVKPANMED-LTEVIT-SAEFHPTHCNMLAYSSSKGSIRL 309 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~~~~~dg~i~i 309 (490)
...|..+-..|||+++..-....+.++++.......+ +.+.. .+ ....|+ .+..-..| .-++.++.||.|.-
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~ds----pg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~vsQ 294 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDS----PGDSRHQVTEQLYLLSGG-FSLLVVHEDGLVSQ 294 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcC----CCchHHHHHHHHHHHhCc-eeEEEEcCCCceee
Confidence 3566777889999999887557888888874332221 11000 01 001122 11122334 67788889998877
Q ss_pred E-eCCCcc-ccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccc
Q 011257 310 I-DMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 310 w-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
| |.+.+. ....+++.+.-.. .++..+.=..+.+-+++-+ .|++.++.-.. .+++-.-......
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~~- 360 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQAP- 360 (733)
T ss_pred eeeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcCc-
Confidence 6 554432 1111122222111 2233222222333444433 36776665543 2222211111111
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
--+++||.+.+|++- +.|.|+++.+++...
T Consensus 361 ---------------~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 361 ---------------QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ---------------ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 157899999998863 457899999987654
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.66 E-value=26 Score=27.05 Aligned_cols=112 Identities=11% Similarity=0.121 Sum_probs=62.9
Q ss_pred EecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC----CCCcEEEEEeCCCeEEEEeCCC
Q 011257 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 240 ~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
.|......|+++ ..+.|.+++.......... .-.+..+-.-...|++++-.| ++...|+.|+. ..+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccc-ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 455555667777 7888888887643221100 000001122345567765544 22256666654 5789999988
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECC----CCCEEEEEcCCeEEEEecc
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp----~g~~l~sg~d~~i~iwd~~ 370 (490)
+... | ++.-...+.++.+-. +..+++.|.+..|.=||..
T Consensus 83 N~d~------F-----------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSDL------F-----------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cchh------h-----------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 6532 1 111125677777632 4567777777778777776
No 460
>PHA03098 kelch-like protein; Provisional
Probab=78.84 E-value=74 Score=31.80 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=16.7
Q ss_pred CCCEEEEeecC-----CeEEEEecCCCce
Q 011257 409 DGGRVATGSYS-----NLFRVFGCSEGSA 432 (490)
Q Consensus 409 d~~~l~s~~~d-----g~i~vw~~~~~~~ 432 (490)
++++++.|+.+ +.|.+||..+.+-
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 67777777754 4678888876643
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.95 E-value=8.7 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=18.3
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 011257 281 LTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 310 (490)
Q Consensus 281 ~~~~v~~~~~~p~~~~~l~~~~~d--g~i~iw 310 (490)
....-....|+|||..++.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345667899999994444444455 555555
No 462
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.77 E-value=32 Score=34.49 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=27.1
Q ss_pred eeEEEcC----CCCEEEEeecCCeEEEEecCCCceeeeEe
Q 011257 402 FECCLSG----DGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (490)
Q Consensus 402 ~~~~~s~----d~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 437 (490)
..+++++ +..+|++.+.|+.+|+||+.++++ +...
T Consensus 218 ~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~-~~~~ 256 (547)
T PF11715_consen 218 ASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC-LATI 256 (547)
T ss_dssp EEEEE-----ETTTEEEEEETTSEEEEEETTTTCE-EEEE
T ss_pred ceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE-EEEe
Confidence 3556666 778999999999999999999988 3444
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=76.98 E-value=32 Score=33.09 Aligned_cols=130 Identities=8% Similarity=0.159 Sum_probs=74.3
Q ss_pred EEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC--------CCEEEEEcCCeEEEEe
Q 011257 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--------GRHILSRDYMTLKLWD 368 (490)
Q Consensus 297 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~--------g~~l~sg~d~~i~iwd 368 (490)
++..|+....++--|+..|+++ ..+..+. .+ -+.|.|+ .+.|+.-++..|.--|
T Consensus 482 i~~dg~~~~kLykmDIErGkvv----eeW~~~d-------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrID 543 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVV----EEWDLKD-------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRID 543 (776)
T ss_pred EEecCCCcccceeeecccceee----eEeecCC-------------cc-eeecCCchhHHhcCccceEEeecccceEEec
Confidence 3445555667777788887753 4555543 23 4566663 3345544665555556
Q ss_pred ccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEE
Q 011257 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 448 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 448 (490)
.+-.+..+.......-. ++.- ++..-.....++|.|+..|-|++||--.-.. -..+.+-...|..+.
T Consensus 544 PR~~gNKi~v~esKdY~---------tKn~---Fss~~tTesGyIa~as~kGDirLyDRig~rA-KtalP~lG~aIk~id 610 (776)
T COG5167 544 PRARGNKIKVVESKDYK---------TKNK---FSSGMTTESGYIAAASRKGDIRLYDRIGKRA-KTALPGLGDAIKHID 610 (776)
T ss_pred ccccCCceeeeeehhcc---------cccc---ccccccccCceEEEecCCCceeeehhhcchh-hhcCcccccceeeeE
Confidence 55434333332221111 1111 1333334567999999999999999653222 234556667788888
Q ss_pred EccCCCCCC
Q 011257 449 QTPSRPSRP 457 (490)
Q Consensus 449 ~sp~~~~~~ 457 (490)
.+.+|...+
T Consensus 611 vta~Gk~il 619 (776)
T COG5167 611 VTANGKHIL 619 (776)
T ss_pred eecCCcEEE
Confidence 888877654
No 464
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=74.86 E-value=8.1 Score=20.25 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.9
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEE
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd 63 (490)
+.|.+++.++. ++|.+...+.+|+|.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 45888888754 899998889999873
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=74.05 E-value=20 Score=36.00 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=25.0
Q ss_pred CceEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 283 EVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 283 ~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
..+..++.++ +. .++++.+.|+++|+||+.+++.
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeE
Confidence 4455666666 44 7999999999999999999875
No 466
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.78 E-value=47 Score=35.92 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=23.5
Q ss_pred cCCCCEEEEeecCCeEEEEecCCCce
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
++++..++++-.||.+.+||...|+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998754
No 467
>PHA02790 Kelch-like protein; Provisional
Probab=73.48 E-value=97 Score=30.49 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=16.6
Q ss_pred CCCEEEEeecC-----CeEEEEecCCCce
Q 011257 409 DGGRVATGSYS-----NLFRVFGCSEGSA 432 (490)
Q Consensus 409 d~~~l~s~~~d-----g~i~vw~~~~~~~ 432 (490)
++++.+.|+.+ ..|..||..+++-
T Consensus 446 ~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 446 DNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 67777888754 3577888776643
No 468
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.30 E-value=1.1e+02 Score=31.16 Aligned_cols=318 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+...-++++.-+|.|+-++.+..||.|++|+....+ ...+....
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~------------------------qski~~~~------------ 55 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR------------------------QSKICEEA------------ 55 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccc------------------------hhhhhhhc------------
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+-..+.|. +.-|+++..|+.+.-|. ++|-..+.+..+...+.... ++...|..+.
T Consensus 56 ~p~~nlv~t----nhgl~~~tsdrr~la~~-~dgvvqqqfdyndqsekefs------------s~~cdptaqn------- 111 (1636)
T KOG3616|consen 56 KPKENLVFT----NHGLVTATSDRRALAWK-EDGVVQQQFDYNDQSEKEFS------------SILCDPTAQN------- 111 (1636)
T ss_pred CCccceeee----ccceEEEeccchhheee-ccCcchhhccccchhhhhcc------------ceecCchhhh-------
Q ss_pred CCCCccccCCCCCcEEEeee------ecccccccccceeeeeccccccceeEEEecCCC-----------CEEEEe-cCC
Q 011257 193 ASNDSSFPPGGVSSLRLPVV------VTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-----------ETFISA-DDL 254 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-----------~~l~~~-~d~ 254 (490)
++|.--|-|.-+|+ +...-......+.+.+...-+...+....+..| ...+.+ ...
T Consensus 112 ------vvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelkilgkdryli~~ts~ 185 (1636)
T KOG3616|consen 112 ------VVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELKILGKDRYLIAHTSE 185 (1636)
T ss_pred ------hhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhhhhhccccceEEeeccc
Q ss_pred cEEEEEcCCCCceeeeee-cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeE--------------------------
Q 011257 255 RINLWNLEISNQSFNIVD-VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI-------------------------- 307 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i-------------------------- 307 (490)
+|.+=|+++..-.--.++ .--..-.-....-.|+.|+... -.++--+.|+++
T Consensus 186 siii~d~es~rfsei~wqgsgg~ekfffd~~n~cli~nage-ltlveyg~d~slg~vrte~~nphlisvqike~~qksyg 264 (1636)
T KOG3616|consen 186 SIIIADLESNRFSEIAWQGSGGHEKFFFDFENCCLIFNAGE-LTLVEYGNDDSLGSVRTEFMNPHLISVQIKEACQKSYG 264 (1636)
T ss_pred cEEEeecccchhhhhhcccCCCcceeeeecCcEEEEEecCe-eEEEEecCCCcchhhhhhhcCceeeehHHHHHHHHhhC
Q ss_pred ------------EEEeCCCcccc---------------------------ccccceeccccCCCccccccccccceEEEE
Q 011257 308 ------------RLIDMRQSALC---------------------------DTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 308 ------------~iwd~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
...|+.+|+.| .-|-..++..-......-+..|.+.|.-+.
T Consensus 265 rnfdse~n~~~a~~~di~tgqicvfsdflqrrtssvffiikakakifndlqlphi~ipvdli~g~~~~~inh~~~vdwie 344 (1636)
T KOG3616|consen 265 RNFDSEDNKKLAEHIDIKTGQICVFSDFLQRRTSSVFFIIKAKAKIFNDLQLPHIAIPVDLIGGQNEGFINHEGAVDWIE 344 (1636)
T ss_pred CCCCcchhhhHHHHhccccCceeeehhhhhhccccceeeehhhhhhcccccCcceeeeeecccCccccccccccccccee
Q ss_pred ECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 349 ~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
....+..|+..+. -.+.++|+.+ .+....+..-. -+.|-|....|+.-+.|+...-|++
T Consensus 345 lne~~~kllfrdkk~kl~l~di~s-~qksmilnfcs-------------------ymqwvp~sdvivaqn~dnl~iwyn~ 404 (1636)
T KOG3616|consen 345 LNERAHKLLFRDKKLKLHLVDIES-CQKSMILNFCS-------------------YMQWVPGSDVIVAQNGDNLCIWYNI 404 (1636)
T ss_pred ccchhhhhhcccccceeEEEEccc-chHHHHHHHhh-------------------hheeccCcceEEecCCCceEEEecC
Q ss_pred CCCceeeeEec
Q 011257 428 SEGSAESTTLE 438 (490)
Q Consensus 428 ~~~~~~~~~~~ 438 (490)
+..+. +..++
T Consensus 405 d~peq-vt~~k 414 (1636)
T KOG3616|consen 405 DAPEQ-VTMFK 414 (1636)
T ss_pred Ccchh-heeeE
No 469
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.21 E-value=1.5e+02 Score=32.22 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=27.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCC
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~ 67 (490)
..-..++|+|...++|.|..+|.|+++....-
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccce
Confidence 45678899999999999999999999987543
No 470
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=60 Score=27.38 Aligned_cols=31 Identities=3% Similarity=-0.109 Sum_probs=21.3
Q ss_pred CCcEEEEEeCc--CeEEEEEccCCeEEEEeeec
Q 011257 125 NSALYLLSTND--KTIKLWKVQEKKVKKVFDWN 155 (490)
Q Consensus 125 ~~~~l~~~~~d--g~i~lwd~~~~~~~~~~~~~ 155 (490)
+|.++.+.+.- ..|++||+.+++........
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~ 87 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA 87 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC
Confidence 45566665543 47999999999876655544
No 471
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.33 E-value=62 Score=27.29 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=16.8
Q ss_pred CCCCceEEEEEcCCCCcEEEEE
Q 011257 280 DLTEVITSAEFHPTHCNMLAYS 301 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~ 301 (490)
.+..-.+.+++.|++.++++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 3456778999999986777776
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.80 E-value=65 Score=27.33 Aligned_cols=115 Identities=10% Similarity=0.106 Sum_probs=62.5
Q ss_pred CEEEEecCCcEEEEEcCCCCc-eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC------eEEEE---eCCCc
Q 011257 246 ETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG------SIRLI---DMRQS 315 (490)
Q Consensus 246 ~~l~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~i~iw---d~~~~ 315 (490)
.+|++.....|.+|++..... ... ++. --+.|..+.++..| ++++|--.+. .+|+| +....
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~-------~F~-Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLC-------TFS-TVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeE-------EEc-chhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 333434778899999983322 222 122 23778999999999 8999876532 45654 32211
Q ss_pred cccccccc-eeccccCCCccc---------cccccccceEEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 316 ALCDTHSK-LFEEQEAPGTRS---------FFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 316 ~~~~~~~~-~~~~~~~~~~~~---------~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
...+++ .+.+|....+.. .--.-..++.+++..|-.--|+.|+++.+.+|.+..
T Consensus 101 --~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 101 --ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred --cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 001111 112221111000 001123467788888844445666667999999874
No 473
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.72 E-value=1e+02 Score=29.55 Aligned_cols=115 Identities=12% Similarity=0.187 Sum_probs=65.7
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC---C--CCCEEEEEcCCeEE
Q 011257 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA---R--NGRHILSRDYMTLK 365 (490)
Q Consensus 291 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s---p--~g~~l~sg~d~~i~ 365 (490)
++++...+++|+..|.++||+...+..... ..+-... -..+|..+..- + +...||.-.-..+.
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~--~lllE~~----------l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~ 100 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE--DLLLETQ----------LKDPILQVECGKFVSGSEDLQLAVLHPRKLS 100 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc--cEEEEEe----------cCCcEEEEEeccccCCCCcceEEEecCCEEE
Confidence 344557999999999999999865432111 1111111 11567777643 2 33466666668888
Q ss_pred EEeccCC-CC-------ceeeeeeeccccccccccccCCCccceeeEEEcCC-----CCEEEEeecCCeEEEEecCCC
Q 011257 366 LWDINMD-SG-------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 366 iwd~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~s~~~dg~i~vw~~~~~ 430 (490)
||.+... +. .+..+..|.-... -..++.-|= ..+|.+-+-||.+.+|+-+.-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~-------------a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRT-------------AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccc-------------eeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 9988431 11 2223333332111 113444331 357888999999999997743
No 474
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=70.37 E-value=18 Score=31.55 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=40.2
Q ss_pred eEEEEECCCCCEEEEEcC----CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 344 ISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
..+-.+-+||++|.+|.+ ..+++++... ...-..+....... ...+.++ ++..-|||+.|+.|+.+
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~m-------~~~RWYp--T~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPNDM-------QSGRWYP--TATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECcccc-------cCCCccc--cceECCCCCEEEEeCcC
Confidence 334457799999999743 5688887542 01111111100000 0112221 56677899999988876
Q ss_pred C-eEEEEec
Q 011257 420 N-LFRVFGC 427 (490)
Q Consensus 420 g-~i~vw~~ 427 (490)
. ...+|.-
T Consensus 139 ~~t~E~~P~ 147 (243)
T PF07250_consen 139 NPTYEFWPP 147 (243)
T ss_pred CCcccccCC
Confidence 4 4555654
No 475
>PRK10115 protease 2; Provisional
Probab=69.26 E-value=1.5e+02 Score=30.85 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred cceeEEEecCCCCEEEEe-c-C----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-C--
Q 011257 234 YHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K-- 304 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~-d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d-- 304 (490)
..+..+.++|++++|+.+ + + ..|++.|+.++..... .+.+ .-..++|.+|+ +.|+.... +
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~ 195 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDN---VEPSFVWANDS-WTFYYVRKHPVT 195 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccC---cceEEEEeeCC-CEEEEEEecCCC
Confidence 345678899999999986 3 2 3577888874432111 1111 11469999998 55544433 2
Q ss_pred ---CeEEEEeCCCccccccccceeccccCCCccccccccccceE-EEEECCCCCEEEEE--c--CCeEEEEecc
Q 011257 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 370 (490)
Q Consensus 305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~l~~sp~g~~l~sg--~--d~~i~iwd~~ 370 (490)
..|+.+++.++..... ..+.... .... .+..+.|+++++.. + ++.+.+++..
T Consensus 196 ~~~~~v~~h~lgt~~~~d~--lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 196 LLPYQVWRHTIGTPASQDE--LVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCEEEEEECCCChhHCe--EEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 3677788887632211 2233221 1122 33345588887753 2 3788888854
No 476
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=68.20 E-value=68 Score=33.66 Aligned_cols=85 Identities=8% Similarity=-0.018 Sum_probs=50.8
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEe----eeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF----DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
...+.|.+|... .-+..++.+-.||+|.++|-.+-+..... ............|.-+.....+..++|||.+.
T Consensus 257 ~~~~~V~si~~~--~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c- 333 (753)
T PF11635_consen 257 TLNKRVVSITSP--ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC- 333 (753)
T ss_pred ccCCeEEEEEec--ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-
Confidence 344667777765 34568888999999999998876544333 11111112222333333333445688999988
Q ss_pred cccccccCCCCccccCCCCCcEE
Q 011257 186 GERNFGCASNDSSFPPGGVSSLR 208 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~ 208 (490)
.++.-..+|.+.
T Consensus 334 -----------~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 -----------SLVQIDEDGKTK 345 (753)
T ss_pred -----------eEEEEecCCCce
Confidence 456666666644
No 477
>PHA03098 kelch-like protein; Provisional
Probab=67.40 E-value=1.4e+02 Score=29.86 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=16.9
Q ss_pred CCcEEEEEeCc-----CeEEEEEccCCeEEE
Q 011257 125 NSALYLLSTND-----KTIKLWKVQEKKVKK 150 (490)
Q Consensus 125 ~~~~l~~~~~d-----g~i~lwd~~~~~~~~ 150 (490)
++..++.|+.+ ..+..||..+++...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45677777765 346778887776554
No 478
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.19 E-value=1.4e+02 Score=29.81 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=23.3
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeec
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
.+.+++.++ +|.++.+|.++ ++++-..+...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~T-Ge~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKT-GEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCC-CCEeEEEeCCC
Confidence 344566665 69999999998 88887776543
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.93 E-value=13 Score=20.07 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=18.1
Q ss_pred EEEEeecCCeEEEEecCCCce
Q 011257 412 RVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.++.++.+|.+..+|.++|+.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcE
Confidence 577788899999999999876
No 480
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=65.37 E-value=1.1e+02 Score=27.73 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=39.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC--CCCEEEEE
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSR 359 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp--~g~~l~sg 359 (490)
....++++++| .++++--..+.|..|+..+.-.. .....+..... .-..+..+++.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~-~~~~~l~~d~~---------~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTP-ENFEILAQDPR---------TLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-G-CCEEEEEE-CC----------GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCc-cchheeEEcCc---------eeeccceeeeccccCceEEEEE
Confidence 45678899998 88888889999999998863111 11122221110 014578888888 66655554
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=64.94 E-value=96 Score=27.10 Aligned_cols=124 Identities=13% Similarity=0.178 Sum_probs=63.2
Q ss_pred EEEcCCCCcEEEEEeC-C--CeEEEEeCCC-ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C-
Q 011257 288 AEFHPTHCNMLAYSSS-K--GSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y- 361 (490)
Q Consensus 288 ~~~~p~~~~~l~~~~~-d--g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d- 361 (490)
-.+-||| +++.+|+. + ..+++++... ...+ .+...... + ....+--.+.--|||+.|+.|. .
T Consensus 72 g~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~-----~w~e~~~~-----m-~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 72 GAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTC-----DWTESPND-----M-QSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred cCCCCCC-CEEEeCCCCccccceEEEecCCCCCCC-----CceECccc-----c-cCCCccccceECCCCCEEEEeCcCC
Confidence 3567899 89988876 2 3477777544 1111 11100000 0 0012334455668999999874 3
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.+..+|.-.........+....... . ......++ .+-..|||++++.+..+ -.|||..+++.
T Consensus 140 ~t~E~~P~~~~~~~~~~~~~l~~~~----~-~~~~nlYP--~~~llPdG~lFi~an~~--s~i~d~~~n~v 201 (243)
T PF07250_consen 140 PTYEFWPPKGPGPGPVTLPFLSQTS----D-TLPNNLYP--FVHLLPDGNLFIFANRG--SIIYDYKTNTV 201 (243)
T ss_pred CcccccCCccCCCCceeeecchhhh----c-cCccccCc--eEEEcCCCCEEEEEcCC--cEEEeCCCCeE
Confidence 5666666532111111111111000 0 00111221 56788999999988765 44668887754
No 482
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=64.67 E-value=1.1e+02 Score=27.64 Aligned_cols=176 Identities=11% Similarity=0.088 Sum_probs=87.0
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCC-----cEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
.|.+||+.+.+ ..+.+.+.+.... ..+.+..+++..... ..+++=...+-|.++|+.+++.. +.+..+.
T Consensus 35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHNSF 108 (287)
T ss_dssp EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETCGC
T ss_pred EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecCCc
Confidence 35567777443 4444444332222 456677887776321 23344444568999999998643 2222221
Q ss_pred CCCc--ccc-----ccccccceEEEEECC---CCCEEEEEcCCeEEEEeccC----CCCc---------eeeeeeecccc
Q 011257 330 APGT--RSF-----FTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINM----DSGP---------VATFQVHEHLR 386 (490)
Q Consensus 330 ~~~~--~~~-----~~~h~~~i~~l~~sp---~g~~l~sg~d~~i~iwd~~~----~~~~---------~~~~~~~~~~~ 386 (490)
.+.+ ..+ .......+..++.+| +|++|.-..-..-++|.+.+ +... ++.+ +....
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~- 186 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS- 186 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC-
Confidence 1111 000 011123477777766 77777765332234444432 0110 0111 11000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce--eeeEec-cC--CCceEEEEEcc
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--ESTTLE-AS--KNPMRRQVQTP 451 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~-~~--~~~v~~~~~sp 451 (490)
. .-.++++++|.+.++--..+.|..|+....-. ....+. .. -..+..+.+.+
T Consensus 187 ----------~---s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 187 ----------Q---SDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp ----------S---ECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred ----------C---CceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 0 12688999999998888999999999886210 011221 11 24567888888
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=64.58 E-value=1.3e+02 Score=31.07 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=23.3
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEe
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFER 64 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~ 64 (490)
.+.|-..+||.|.+.++....+..|.+++-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 567888899999887776667778888774
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=64.41 E-value=24 Score=25.12 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=26.9
Q ss_pred EEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc
Q 011257 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (490)
Q Consensus 300 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~ 360 (490)
.+..+|.+.-||..+++. ..+...- ...+.|++++|+.+++.+.
T Consensus 32 e~~~~GRll~ydp~t~~~-----~vl~~~L------------~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKET-----TVLLDGL------------YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HT---EEEEEEETTTTEE-----EEEEEEE------------SSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCcCEEEEECCCCeE-----EEehhCC------------CccCeEEEcCCCCEEEEEe
Confidence 344567888889888763 2222111 3468899999999988874
No 485
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=64.20 E-value=2.2e+02 Score=31.18 Aligned_cols=142 Identities=12% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCcEEEEEcCC----CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC-CCccccccccceecc
Q 011257 253 DLRINLWNLEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEE 327 (490)
Q Consensus 253 d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~ 327 (490)
-|.+.++|+-. .++...-..+|........+.|..++ .-+| .|+++ ..-.|.+|++ +...++. +.-++.
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G--~l~~~-~GqKI~v~~l~r~~~lig--VaFiD~ 1137 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRG--HLLSS-QGQKIIVRKLDRDSELIG--VAFIDL 1137 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-Eecc--EEEEc-cCcEEEEEEeccCCccee--eEEecc
Confidence 37888998742 22222211122222344566666554 3345 44443 4557999999 4433220 111111
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
++.-.....-+++|+.|+- ..|.+.-.+.....+..+...... ..++++.|
T Consensus 1138 ---------------~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~-------------l~v~s~EF 1189 (1366)
T KOG1896|consen 1138 ---------------PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEP-------------LNVYSTEF 1189 (1366)
T ss_pred ---------------ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCch-------------hhceeeee
Confidence 1222222223456666653 667766665322222222222211 12567888
Q ss_pred cCCCC--EEEEeecCCeEEEEecC
Q 011257 407 SGDGG--RVATGSYSNLFRVFGCS 428 (490)
Q Consensus 407 s~d~~--~l~s~~~dg~i~vw~~~ 428 (490)
--||. +++++..|+.|++|-..
T Consensus 1190 LVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1190 LVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEcCCeeEEEEEcCCCcEEEEEeC
Confidence 77776 46777889999998765
No 486
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=62.53 E-value=14 Score=38.10 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=21.6
Q ss_pred ECCCCCEEEEecCCCcEEEEEecC
Q 011257 43 FDKSGDHLATGDRGGRVVLFERTD 66 (490)
Q Consensus 43 ~s~dg~~latg~~dg~v~iwd~~~ 66 (490)
.||||..||++..||.++.|.+.-
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeee
Confidence 789999999999999999998763
No 487
>PRK13684 Ycf48-like protein; Provisional
Probab=59.96 E-value=1.5e+02 Score=27.54 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=76.6
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d 361 (490)
...+..+.+.|++ .++++ +..|.+..- .+.+. .++...... -...++++.+.++++.+++|..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s-~~~gg------~tW~~~~~~--------~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYST-WEPGQ------TAWTPHQRN--------SSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEE-cCCCC------CeEEEeeCC--------CcccceeeeEcCCCCEEEEecC
Confidence 4568899999987 55554 455554421 11111 111111100 0146899999999999888887
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEec---
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--- 438 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~--- 438 (490)
|.+.+=..+. +..-.....+... ....++++.+.+++..++++ .+|.|. .....|+. -....
T Consensus 235 G~~~~~s~d~-G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~ 299 (334)
T PRK13684 235 GQIRFNDPDD-LESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGE 299 (334)
T ss_pred CEEEEccCCC-CCccccccCCccc-----------cccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCC
Confidence 8765322222 3322222111000 00114578899988866654 567554 44455543 22222
Q ss_pred cCCCceEEEEEccCCCCCCCC
Q 011257 439 ASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 439 ~~~~~v~~~~~sp~~~~~~~~ 459 (490)
.-....+.+.|..++...+.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 300 EVPSNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred CCCcceEEEEEeCCCceEEEC
Confidence 122357777777666554444
No 488
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=59.51 E-value=2e+02 Score=29.95 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=77.5
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEE--------EEcCCCCce
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINL--------WNLEISNQS 267 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~--------wd~~~~~~~ 267 (490)
.+..++.++.+.++.- . .....++...........+.++.+++.. +..| -||++-. ||.+ ....
T Consensus 549 Tic~gtq~ssisisss-s---~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e-p~~~ 621 (925)
T KOG3522|consen 549 TICLGTQTSSISISSS-S---LDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE-PNIS 621 (925)
T ss_pred cccccCccceeEEeec-c---CCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC-Cccc
Confidence 4677888899988761 1 1111222222222223445555554431 2222 3444433 5444 2211
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
+.....+|.+.++..| ++.++.+|.+.++...+.... .....| ..|...|+++
T Consensus 622 ----------~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~----~~leah---------qee~~~Vthm 674 (925)
T KOG3522|consen 622 ----------IPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRS----WDLEAH---------QEEAHSVTHM 674 (925)
T ss_pred ----------cccCCccccchhhhhc----eeeeecCCceEEEechhcccc----chhHHH---------HhhcceEEEE
Confidence 1234567777777654 466788999999998775432 122221 2334679999
Q ss_pred EECCCCCEEEEEcCCeEEEEeccC
Q 011257 348 KFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 348 ~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
.....|-+++..+...+++++..+
T Consensus 675 ~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 675 LYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred EeeCCceEEEEcCCCEEEEecccc
Confidence 998888777766555666665544
No 489
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=59.33 E-value=47 Score=30.14 Aligned_cols=74 Identities=11% Similarity=0.071 Sum_probs=49.6
Q ss_pred eEEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
+++|...++|.+|++... ..|.+.|.++ ++.+-.+.+....-- . + +-...+|-.|-+++-.+..++.|
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~t-G~I~W~lgG~~~~df--~-~-------~~~~f~~QHdar~~~~~~~~~~I 214 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPST-GKIIWRLGGKRNSDF--T-L-------PATNFSWQHDARFLNESNDDGTI 214 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCC-CcEEEEeCCCCCCcc--c-c-------cCCcEeeccCCEEeccCCCCCEE
Confidence 677788889999999865 8999999887 887777766522100 0 0 00134555566666566778888
Q ss_pred EEEecC
Q 011257 423 RVFGCS 428 (490)
Q Consensus 423 ~vw~~~ 428 (490)
.|+|=.
T Consensus 215 slFDN~ 220 (299)
T PF14269_consen 215 SLFDNA 220 (299)
T ss_pred EEEcCC
Confidence 888873
No 490
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=56.45 E-value=1.3e+02 Score=25.68 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=40.6
Q ss_pred ccceeEEEecCCCCEEEEecCCcEEEEEcCCCCc---eeeeeecCCCccCCCC-CceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQ---SFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
...+.+++-.|-..-|+.|.++.+.+|.+..... .+.+++....-+.-|. -.+..+++.. .++|..+ +-.++
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~ 209 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICE---GYIAVMS-DLEVL 209 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEe---eEEEEec-CCEEE
Confidence 3566788888865566677777899998763322 1233333322122222 2245666654 3555544 44555
Q ss_pred EEeC
Q 011257 309 LIDM 312 (490)
Q Consensus 309 iwd~ 312 (490)
+..+
T Consensus 210 Vlkl 213 (215)
T PF14761_consen 210 VLKL 213 (215)
T ss_pred EEEE
Confidence 5543
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=56.34 E-value=36 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=21.8
Q ss_pred eEEEcCCCCEEEEee-cCCeEEEEecC
Q 011257 403 ECCLSGDGGRVATGS-YSNLFRVFGCS 428 (490)
Q Consensus 403 ~~~~s~d~~~l~s~~-~dg~i~vw~~~ 428 (490)
.+.++|++++|..++ ..+.|++|+..
T Consensus 58 GI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 58 GIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 789999999887766 57889999875
No 492
>PHA02790 Kelch-like protein; Provisional
Probab=54.45 E-value=2.2e+02 Score=27.99 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=16.9
Q ss_pred CCcEEEEEeCc--CeEEEEEccCCeEEEE
Q 011257 125 NSALYLLSTND--KTIKLWKVQEKKVKKV 151 (490)
Q Consensus 125 ~~~~l~~~~~d--g~i~lwd~~~~~~~~~ 151 (490)
++..++.|+.+ ..+..||..+++....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 45666777654 3577788776655443
No 493
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=54.01 E-value=3.9e+02 Score=30.65 Aligned_cols=99 Identities=6% Similarity=0.007 Sum_probs=55.4
Q ss_pred cceEEEEECCCCCEEEEEcCCeEEEEeccC---CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec
Q 011257 342 ASISDIKFARNGRHILSRDYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 418 (490)
+.|..+.+++...-++-|.+..+.+=..++ .+..+.-+. .. .|..++.-.+ +.+++...
T Consensus 660 G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~---~~--------------~i~a~Avv~~-~~fvald~ 721 (1774)
T PF11725_consen 660 GKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE---DR--------------VITAFAVVND-NKFVALDD 721 (1774)
T ss_pred CceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC---cC--------------cceeEEEEcC-CceEEecc
Confidence 567778887766666666554433222221 122222222 11 1447777644 55566788
Q ss_pred CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 419 dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
.|.+.... ..+...-....+-.+.|..++.....+..+..
T Consensus 722 qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 722 QGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALT 761 (1774)
T ss_pred CCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEec
Confidence 89999998 66664323334445778877776665544443
No 494
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.98 E-value=31 Score=18.01 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 285 ITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 285 v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
...++.+++| +++++=+...+|+++
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4567777777 666665556665543
No 495
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=52.77 E-value=73 Score=22.51 Aligned_cols=29 Identities=3% Similarity=0.125 Sum_probs=23.6
Q ss_pred ceEEEEECCCCCEEEEEc--CCeEEEEeccC
Q 011257 343 SISDIKFARNGRHILSRD--YMTLKLWDINM 371 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~ 371 (490)
..+.|.++|++++|..++ .+.|.+|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 457889999999998874 48999998763
No 496
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.44 E-value=20 Score=36.96 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=50.3
Q ss_pred EEEEECCCCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC----------C-CC-
Q 011257 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG----------D-GG- 411 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------d-~~- 411 (490)
..++.||+|++.|..++ |+|-+-|+.. ...+..++|..+. ++.|-+ . .+
T Consensus 325 e~lslSP~gtlAAVTD~lgRVlLlDta~-~ivvr~wKGYRDA-----------------sc~fv~vkek~~~s~~~~sRv 386 (1244)
T KOG2727|consen 325 EKLSLSPSGTLAAVTDSLGRVLLLDTAA-LIVVRLWKGYRDA-----------------SCVFVEVKEKKGKSEPVKSRV 386 (1244)
T ss_pred ceeeeCCCccEEEEecccCcEEEEehhh-hhHHHHhcccccc-----------------eeEEEEcccccCCCccCcCce
Confidence 56889999999888877 9999999986 7777777776655 334433 1 11
Q ss_pred ---EEEEeecCCeEEEEecCCCce
Q 011257 412 ---RVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 412 ---~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+++.+-.-|.+-||.+.+|-.
T Consensus 387 AlFLvIyAPRrgiLEVW~~q~gpR 410 (1244)
T KOG2727|consen 387 ALFLVIYAPRRGILEVWQMQTGPR 410 (1244)
T ss_pred eEEEEEecccccHHHHHHhccCCe
Confidence 233455678888999888855
No 497
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=50.43 E-value=29 Score=19.91 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=15.8
Q ss_pred CCCEEEEeecCCeEEEEecCC
Q 011257 409 DGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~ 429 (490)
.+..|..++.||.|+.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788889999999998764
No 498
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=50.34 E-value=64 Score=20.48 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCEEEEecC-----CCcEEEEEecC
Q 011257 37 IISAIEFDKSGDHLATGDR-----GGRVVLFERTD 66 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~-----dg~v~iwd~~~ 66 (490)
.+.+++.-|||++|+.|.. +....|..+..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECC
Confidence 4788999999999999853 33455666543
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=49.96 E-value=2.4e+02 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
..|..++..+.. +.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 348899999988 8999999999999999975
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=49.90 E-value=2.7e+02 Score=27.48 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=61.4
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-------
Q 011257 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------- 360 (490)
Q Consensus 288 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~------- 360 (490)
+...++| .+++... ..++.+|+.. +... .+.+.... ..--..+...|+|.+|+.+.
T Consensus 153 ~~~l~nG-~ll~~~~--~~~~e~D~~G-~v~~--~~~l~~~~-----------~~~HHD~~~l~nGn~L~l~~~~~~~~~ 215 (477)
T PF05935_consen 153 FKQLPNG-NLLIGSG--NRLYEIDLLG-KVIW--EYDLPGGY-----------YDFHHDIDELPNGNLLILASETKYVDE 215 (477)
T ss_dssp EEE-TTS--EEEEEB--TEEEEE-TT---EEE--EEE--TTE-----------E-B-S-EEE-TTS-EEEEEEETTEE-T
T ss_pred eeEcCCC-CEEEecC--CceEEEcCCC-CEEE--eeecCCcc-----------cccccccEECCCCCEEEEEeecccccC
Confidence 6677888 5665444 7788888764 3221 12222200 01124566778888887654
Q ss_pred -------CCeEEEEeccCCCCceeeeeeecccccccc------------ccccCCCccceeeEEEcC-CCCEEEEeecCC
Q 011257 361 -------YMTLKLWDINMDSGPVATFQVHEHLRPKLC------------DLYENDSIFDKFECCLSG-DGGRVATGSYSN 420 (490)
Q Consensus 361 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg 420 (490)
...|...| .+ ++.+..+........... ..........+.++.+.+ ++.+|+++-.-.
T Consensus 216 ~~~~~~~~D~Ivevd-~t-G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s 293 (477)
T PF05935_consen 216 DKDVDTVEDVIVEVD-PT-GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQS 293 (477)
T ss_dssp S-EE---S-EEEEE--TT-S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-
T ss_pred CCCccEecCEEEEEC-CC-CCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcce
Confidence 13455556 44 666666554443211100 001122233477999999 666666665566
Q ss_pred eEEEEecCCCceeeeEeccC
Q 011257 421 LFRVFGCSEGSAESTTLEAS 440 (490)
Q Consensus 421 ~i~vw~~~~~~~~~~~~~~~ 440 (490)
.|...|.++++. .-.+..+
T Consensus 294 ~V~~Id~~t~~i-~Wilg~~ 312 (477)
T PF05935_consen 294 AVIKIDYRTGKI-KWILGPP 312 (477)
T ss_dssp EEEEEE-TTS-E-EEEES-S
T ss_pred EEEEEECCCCcE-EEEeCCC
Confidence 888888887765 3444433
Done!