Query 011257
Match_columns 490
No_of_seqs 560 out of 2107
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 04:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 3.7E-46 1.3E-50 360.5 35.7 399 11-462 6-437 (447)
2 1nr0_A Actin interacting prote 100.0 3.5E-45 1.2E-49 366.6 38.2 393 14-462 41-601 (611)
3 3ow8_A WD repeat-containing pr 100.0 3.2E-43 1.1E-47 323.4 36.6 287 31-428 28-320 (321)
4 1vyh_C Platelet-activating fac 100.0 1.8E-43 6.2E-48 336.7 34.4 285 31-428 104-410 (410)
5 2ynn_A Coatomer subunit beta'; 100.0 2.8E-42 9.6E-47 315.0 36.3 273 31-456 9-285 (304)
6 1got_B GT-beta; complex (GTP-b 100.0 1.6E-41 5.5E-46 315.2 37.6 286 31-426 51-340 (340)
7 1nr0_A Actin interacting prote 100.0 1.2E-41 4.1E-46 340.9 38.8 367 32-464 15-514 (611)
8 4g56_B MGC81050 protein; prote 100.0 2E-42 6.8E-47 323.0 30.7 308 14-432 28-346 (357)
9 3frx_A Guanine nucleotide-bind 100.0 3.3E-41 1.1E-45 310.0 36.1 298 31-430 13-318 (319)
10 2ymu_A WD-40 repeat protein; u 100.0 3.9E-41 1.3E-45 336.2 37.9 311 31-462 258-570 (577)
11 4gqb_B Methylosome protein 50; 100.0 1.9E-41 6.4E-46 313.8 32.9 302 32-431 27-333 (344)
12 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-41 8.6E-46 314.4 33.7 314 32-432 12-338 (345)
13 3iz6_a 40S ribosomal protein R 100.0 1.8E-41 6.2E-46 319.7 30.4 310 31-432 62-378 (380)
14 2xzm_R RACK1; ribosome, transl 100.0 1.7E-40 5.8E-45 308.8 34.9 306 31-430 17-341 (343)
15 2pbi_B Guanine nucleotide-bind 100.0 2.6E-40 8.9E-45 308.5 35.7 286 30-426 59-354 (354)
16 4aow_A Guanine nucleotide-bind 100.0 1.5E-39 5.1E-44 302.3 38.1 302 31-431 34-339 (340)
17 3ow8_A WD repeat-containing pr 100.0 4E-40 1.4E-44 302.7 33.6 284 93-463 25-312 (321)
18 1erj_A Transcriptional repress 100.0 7.9E-40 2.7E-44 310.0 34.8 315 32-430 61-390 (393)
19 1vyh_C Platelet-activating fac 100.0 7.1E-40 2.4E-44 311.9 32.6 281 93-464 101-403 (410)
20 2ymu_A WD-40 repeat protein; u 100.0 3.3E-39 1.1E-43 322.2 38.0 313 31-464 217-531 (577)
21 4ery_A WD repeat-containing pr 100.0 1.6E-38 5.5E-43 291.7 37.5 289 31-428 19-311 (312)
22 1got_B GT-beta; complex (GTP-b 100.0 7.7E-39 2.6E-43 297.1 35.2 286 92-463 47-334 (340)
23 2pbi_B Guanine nucleotide-bind 100.0 9.4E-39 3.2E-43 297.9 35.8 288 93-463 57-348 (354)
24 2pm9_A Protein WEB1, protein t 100.0 3.1E-39 1.1E-43 309.0 30.0 338 31-464 8-406 (416)
25 4e54_B DNA damage-binding prot 100.0 6.9E-39 2.4E-43 307.9 31.3 300 32-432 116-433 (435)
26 4gqb_B Methylosome protein 50; 100.0 1E-38 3.5E-43 295.5 30.8 282 113-458 31-316 (344)
27 2hes_X YDR267CP; beta-propelle 100.0 2.4E-38 8.2E-43 292.4 33.1 299 31-429 10-328 (330)
28 1r5m_A SIR4-interacting protei 100.0 7.4E-39 2.5E-43 307.0 30.5 327 29-462 39-415 (425)
29 3iz6_a 40S ribosomal protein R 100.0 3.4E-38 1.2E-42 297.4 33.6 305 92-467 58-370 (380)
30 3dm0_A Maltose-binding peripla 100.0 6.7E-38 2.3E-42 319.0 36.3 307 31-428 378-692 (694)
31 3zwl_B Eukaryotic translation 100.0 1.7E-37 5.9E-42 291.7 36.2 295 31-432 28-349 (369)
32 4g56_B MGC81050 protein; prote 100.0 1.6E-38 5.5E-43 296.6 26.8 315 40-464 10-335 (357)
33 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-38 1.8E-42 295.7 30.3 313 33-433 6-365 (372)
34 4ery_A WD repeat-containing pr 100.0 4.5E-37 1.5E-41 282.0 34.6 287 86-460 9-298 (312)
35 4h5i_A Guanine nucleotide-exch 100.0 6.1E-38 2.1E-42 293.4 28.5 303 35-430 14-344 (365)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-37 1.4E-41 286.0 33.7 308 92-464 7-327 (345)
37 2pm7_B Protein transport prote 100.0 1.9E-37 6.4E-42 282.1 30.0 258 31-429 5-285 (297)
38 1pgu_A Actin interacting prote 100.0 5.6E-37 1.9E-41 308.5 36.0 392 14-460 41-602 (615)
39 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-37 5.7E-42 321.9 31.6 214 31-316 13-244 (902)
40 3ei3_B DNA damage-binding prot 100.0 5.3E-37 1.8E-41 290.1 31.2 304 31-429 69-382 (383)
41 1gxr_A ESG1, transducin-like e 100.0 3.2E-36 1.1E-40 279.4 35.9 287 30-428 46-336 (337)
42 1sq9_A Antiviral protein SKI8; 100.0 1.2E-36 4.2E-41 289.1 33.4 332 31-431 12-397 (397)
43 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-37 1.9E-41 332.8 34.6 390 14-464 639-1150(1249)
44 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-37 1.4E-41 319.0 31.8 393 32-466 55-655 (902)
45 3vl1_A 26S proteasome regulato 100.0 1.3E-36 4.3E-41 291.2 30.2 310 36-454 57-398 (420)
46 1gxr_A ESG1, transducin-like e 100.0 1.3E-36 4.4E-41 282.1 29.2 317 33-461 7-326 (337)
47 4gga_A P55CDC, cell division c 100.0 4.9E-36 1.7E-40 286.8 34.0 297 37-444 107-409 (420)
48 3bg1_A Protein SEC13 homolog; 100.0 5.5E-37 1.9E-41 281.5 25.9 257 31-428 9-292 (316)
49 2hes_X YDR267CP; beta-propelle 100.0 3.1E-36 1.1E-40 278.3 30.8 297 92-463 6-319 (330)
50 3dwl_C Actin-related protein 2 100.0 1.8E-37 6.1E-42 292.7 22.7 255 34-370 10-280 (377)
51 4a11_B DNA excision repair pro 100.0 3E-35 1E-39 280.4 37.5 319 31-432 39-368 (408)
52 3frx_A Guanine nucleotide-bind 100.0 7.9E-36 2.7E-40 274.2 32.2 284 91-464 8-309 (319)
53 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-35 6.6E-40 320.6 39.7 338 31-464 611-1026(1249)
54 2pm9_A Protein WEB1, protein t 100.0 9.3E-37 3.2E-41 291.7 25.7 329 13-430 46-415 (416)
55 1r5m_A SIR4-interacting protei 100.0 1.2E-35 4.1E-40 284.7 32.5 296 34-428 107-424 (425)
56 2xzm_R RACK1; ribosome, transl 100.0 5.4E-35 1.8E-39 271.7 34.6 290 90-465 11-333 (343)
57 1erj_A Transcriptional repress 100.0 5.3E-35 1.8E-39 276.9 33.7 283 113-453 65-364 (393)
58 4ggc_A P55CDC, cell division c 100.0 7.5E-35 2.6E-39 267.9 33.4 283 38-430 28-316 (318)
59 3gre_A Serine/threonine-protei 100.0 2E-35 6.9E-40 284.4 29.6 326 32-426 60-437 (437)
60 3i2n_A WD repeat-containing pr 100.0 1.5E-35 5.1E-40 277.2 27.4 302 32-431 15-355 (357)
61 3k26_A Polycomb protein EED; W 100.0 1.6E-35 5.4E-40 278.0 27.6 312 32-428 15-365 (366)
62 3v7d_B Cell division control p 100.0 1.6E-34 5.4E-39 280.4 35.4 305 31-450 117-442 (464)
63 3odt_A Protein DOA1; ubiquitin 100.0 2.1E-34 7.1E-39 264.3 33.5 280 31-432 14-299 (313)
64 2ynn_A Coatomer subunit beta'; 100.0 7.1E-35 2.4E-39 266.0 30.0 241 93-465 6-252 (304)
65 3mkq_A Coatomer beta'-subunit; 100.0 7.3E-35 2.5E-39 302.8 34.0 318 31-460 9-375 (814)
66 4aez_A CDC20, WD repeat-contai 100.0 6.5E-35 2.2E-39 277.3 30.6 295 37-447 95-398 (401)
67 1pgu_A Actin interacting prote 100.0 1.7E-34 5.7E-39 290.4 34.8 317 31-452 14-349 (615)
68 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-34 1.5E-38 275.6 36.1 307 31-462 114-428 (445)
69 4e54_B DNA damage-binding prot 100.0 1.5E-34 5.2E-39 277.7 28.3 290 112-467 119-426 (435)
70 2j04_B YDR362CP, TAU91; beta p 100.0 2.2E-36 7.6E-41 293.6 15.7 324 32-454 130-496 (524)
71 3jrp_A Fusion protein of prote 100.0 2.8E-34 9.7E-39 270.8 29.3 258 31-431 7-289 (379)
72 1yfq_A Cell cycle arrest prote 100.0 7.8E-34 2.7E-38 264.0 31.3 285 33-464 9-315 (342)
73 4aow_A Guanine nucleotide-bind 100.0 5.4E-33 1.9E-37 258.0 34.2 287 91-465 29-330 (340)
74 2j04_A TAU60, YPL007P, hypothe 100.0 3.9E-35 1.3E-39 277.5 19.7 325 33-459 13-348 (588)
75 3vl1_A 26S proteasome regulato 100.0 3E-33 1E-37 267.8 32.3 286 36-429 98-419 (420)
76 3mkq_A Coatomer beta'-subunit; 100.0 3.9E-33 1.3E-37 289.8 35.3 344 13-463 36-414 (814)
77 3f3f_A Nucleoporin SEH1; struc 100.0 5.5E-33 1.9E-37 258.7 32.5 273 31-432 7-340 (351)
78 1p22_A F-BOX/WD-repeat protein 100.0 7.3E-33 2.5E-37 266.1 32.5 293 33-451 131-434 (435)
79 1sq9_A Antiviral protein SKI8; 100.0 5.4E-33 1.9E-37 263.9 30.6 284 93-454 9-367 (397)
80 2j04_B YDR362CP, TAU91; beta p 100.0 4.3E-34 1.5E-38 277.6 23.2 297 33-429 205-517 (524)
81 3odt_A Protein DOA1; ubiquitin 100.0 2.4E-32 8.3E-37 250.5 33.0 272 90-457 8-282 (313)
82 3ei3_B DNA damage-binding prot 100.0 4E-33 1.4E-37 263.5 28.4 295 91-460 64-371 (383)
83 3dm0_A Maltose-binding peripla 100.0 6.9E-33 2.4E-37 282.1 31.8 276 113-464 383-685 (694)
84 3mmy_A MRNA export factor; mRN 100.0 7.1E-33 2.4E-37 260.1 28.6 300 31-428 35-345 (368)
85 4h5i_A Guanine nucleotide-exch 100.0 3.5E-33 1.2E-37 261.2 26.1 297 113-467 15-338 (365)
86 3gre_A Serine/threonine-protei 100.0 2.4E-33 8.1E-38 269.9 25.6 315 42-452 34-418 (437)
87 3zwl_B Eukaryotic translation 100.0 3.8E-32 1.3E-36 255.2 33.2 280 113-464 33-338 (369)
88 3v7d_B Cell division control p 100.0 4.1E-32 1.4E-36 263.4 34.1 309 14-427 144-461 (464)
89 3k26_A Polycomb protein EED; W 100.0 1.2E-32 4.1E-37 258.4 28.9 296 113-462 19-356 (366)
90 3i2n_A WD repeat-containing pr 100.0 2.5E-32 8.6E-37 255.3 28.8 273 113-457 19-337 (357)
91 2pm7_B Protein transport prote 100.0 6.1E-32 2.1E-36 245.7 29.7 238 113-465 10-278 (297)
92 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-31 3.8E-36 252.5 30.7 262 113-429 9-274 (372)
93 3jro_A Fusion protein of prote 100.0 1.3E-32 4.3E-37 281.6 25.9 257 31-430 5-286 (753)
94 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-31 3.6E-36 255.3 30.4 283 37-458 36-330 (402)
95 3bg1_A Protein SEC13 homolog; 100.0 2.2E-32 7.6E-37 250.8 23.9 242 113-467 14-288 (316)
96 4gga_A P55CDC, cell division c 100.0 7.7E-31 2.6E-35 250.7 34.3 274 115-465 108-388 (420)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-30 8.7E-35 249.3 36.5 297 14-430 141-443 (445)
98 4a11_B DNA excision repair pro 100.0 1.6E-31 5.5E-36 254.5 26.1 309 93-465 36-358 (408)
99 3dwl_C Actin-related protein 2 100.0 3.4E-32 1.2E-36 256.5 20.4 258 113-428 12-280 (377)
100 4aez_A CDC20, WD repeat-contai 100.0 1.5E-30 5E-35 247.3 30.7 271 115-466 96-374 (401)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-30 5.9E-35 250.6 31.5 203 231-456 147-369 (450)
102 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-31 7E-36 247.6 24.0 266 39-451 40-309 (343)
103 2xyi_A Probable histone-bindin 100.0 8.9E-31 3E-35 251.0 28.5 268 29-430 122-411 (430)
104 3vu4_A KMHSV2; beta-propeller 100.0 3.3E-30 1.1E-34 240.2 28.1 301 32-431 16-338 (355)
105 4ggc_A P55CDC, cell division c 100.0 2.2E-29 7.7E-34 231.3 33.1 273 115-464 28-307 (318)
106 4gq1_A NUP37; propeller, trans 100.0 1.7E-30 5.8E-35 245.8 25.4 223 229-461 132-379 (393)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 7.7E-30 2.6E-34 242.5 30.0 276 13-432 58-345 (402)
108 3mmy_A MRNA export factor; mRN 100.0 2.6E-29 8.7E-34 235.8 32.4 292 93-463 32-337 (368)
109 3jrp_A Fusion protein of prote 100.0 2.6E-29 8.9E-34 236.8 30.0 245 93-464 4-279 (379)
110 1l0q_A Surface layer protein; 100.0 1.2E-28 4.2E-33 233.4 34.6 292 48-459 3-307 (391)
111 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-30 2E-34 242.3 23.4 258 113-462 16-288 (588)
112 2xyi_A Probable histone-bindin 100.0 6.7E-29 2.3E-33 237.9 30.3 258 103-457 119-394 (430)
113 3f3f_A Nucleoporin SEH1; struc 100.0 1E-28 3.5E-33 229.7 30.2 267 113-479 12-345 (351)
114 3bws_A Protein LP49; two-domai 100.0 1.1E-28 3.9E-33 237.0 30.6 286 32-428 119-431 (433)
115 3vu4_A KMHSV2; beta-propeller 100.0 2.3E-28 7.8E-33 227.8 30.6 302 113-486 20-353 (355)
116 4gq1_A NUP37; propeller, trans 100.0 1.8E-29 6.1E-34 238.7 23.4 265 34-428 88-388 (393)
117 1yfq_A Cell cycle arrest prote 100.0 7.9E-29 2.7E-33 230.2 25.5 276 14-427 35-322 (342)
118 1p22_A F-BOX/WD-repeat protein 100.0 9E-28 3.1E-32 230.6 32.5 262 113-463 134-405 (435)
119 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.9E-32 212.9 29.8 288 37-428 41-356 (356)
120 3dw8_B Serine/threonine-protei 100.0 1.1E-27 3.9E-32 231.0 31.3 292 36-428 94-445 (447)
121 3jro_A Fusion protein of prote 100.0 9.1E-28 3.1E-32 245.7 26.7 246 94-464 3-277 (753)
122 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.7E-27 1.6E-31 226.6 29.1 258 33-430 100-392 (450)
123 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.4E-27 8.1E-32 225.4 24.8 305 34-455 61-411 (415)
124 3bws_A Protein LP49; two-domai 100.0 1.4E-26 4.8E-31 222.4 30.4 269 113-459 123-418 (433)
125 2w18_A PALB2, fancn, partner a 100.0 6E-27 2.1E-31 208.2 23.3 238 34-369 110-355 (356)
126 1l0q_A Surface layer protein; 100.0 1.3E-25 4.3E-30 212.7 33.7 329 14-457 14-363 (391)
127 3lrv_A PRE-mRNA-splicing facto 99.9 1.2E-25 4.1E-30 208.7 28.1 249 35-430 76-334 (343)
128 1nir_A Nitrite reductase; hemo 99.9 8.9E-26 3.1E-30 221.0 28.5 310 42-460 144-497 (543)
129 1nir_A Nitrite reductase; hemo 99.9 4E-24 1.4E-28 209.3 34.5 319 38-440 181-524 (543)
130 2ecf_A Dipeptidyl peptidase IV 99.9 3.5E-25 1.2E-29 227.4 25.4 337 35-460 36-443 (741)
131 1k32_A Tricorn protease; prote 99.9 7.8E-24 2.7E-28 224.7 31.8 226 176-461 249-491 (1045)
132 3u4y_A Uncharacterized protein 99.9 1.8E-22 6E-27 186.4 35.3 309 41-454 3-327 (331)
133 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-24 8.9E-29 220.4 22.3 322 36-459 17-427 (723)
134 1ri6_A Putative isomerase YBHE 99.9 2.3E-22 8E-27 186.4 33.0 280 113-454 38-335 (343)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 6E-22 2E-26 188.2 29.4 260 32-411 114-410 (415)
136 3vgz_A Uncharacterized protein 99.9 5E-21 1.7E-25 178.2 32.7 273 112-461 40-333 (353)
137 2z3z_A Dipeptidyl aminopeptida 99.9 8.1E-22 2.8E-26 201.3 28.0 276 113-460 82-419 (706)
138 1pby_B Quinohemoprotein amine 99.9 2.5E-21 8.5E-26 179.0 27.8 280 48-440 2-320 (337)
139 2ojh_A Uncharacterized protein 99.9 1.2E-21 3.9E-26 177.6 24.8 257 52-420 17-293 (297)
140 2ojh_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 180.5 21.6 255 132-462 18-292 (297)
141 3hfq_A Uncharacterized protein 99.9 6.1E-21 2.1E-25 177.3 29.2 290 13-432 17-322 (347)
142 1k32_A Tricorn protease; prote 99.9 2.3E-21 8E-26 205.8 29.7 286 32-427 200-500 (1045)
143 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-21 5.3E-26 199.2 27.2 295 36-431 82-437 (706)
144 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-21 7.2E-26 199.3 27.3 290 113-461 37-399 (741)
145 1ri6_A Putative isomerase YBHE 99.9 1.8E-20 6.3E-25 173.6 28.9 280 12-371 15-308 (343)
146 3vgz_A Uncharacterized protein 99.9 3.9E-20 1.3E-24 172.2 30.3 285 32-420 37-335 (353)
147 1z68_A Fibroblast activation p 99.9 3.9E-21 1.3E-25 196.6 22.7 323 40-459 20-427 (719)
148 3o4h_A Acylamino-acid-releasin 99.9 3.5E-21 1.2E-25 191.8 21.3 270 34-429 20-315 (582)
149 3scy_A Hypothetical bacterial 99.9 4.4E-19 1.5E-23 165.7 33.2 280 113-450 50-360 (361)
150 3u4y_A Uncharacterized protein 99.9 8.2E-20 2.8E-24 168.4 27.2 264 126-462 10-293 (331)
151 1jmx_B Amine dehydrogenase; ox 99.9 1.1E-19 3.6E-24 168.9 26.6 299 40-438 4-333 (349)
152 1xfd_A DIP, dipeptidyl aminope 99.9 9.4E-21 3.2E-25 194.0 19.1 292 114-462 18-380 (723)
153 3hfq_A Uncharacterized protein 99.8 2.4E-18 8E-23 159.8 31.4 209 234-462 86-306 (347)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-18 6.9E-23 164.4 31.2 231 31-370 88-332 (434)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 2.1E-19 7.3E-24 171.1 24.1 255 8-371 10-278 (434)
156 3o4h_A Acylamino-acid-releasin 99.8 6E-20 2.1E-24 182.9 20.4 266 113-460 22-300 (582)
157 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-17 5.4E-22 155.2 34.3 259 114-430 41-342 (365)
158 3scy_A Hypothetical bacterial 99.8 4.4E-18 1.5E-22 158.9 30.2 288 13-371 28-337 (361)
159 1pby_B Quinohemoprotein amine 99.8 6.9E-19 2.4E-23 162.5 22.3 255 127-460 2-298 (337)
160 4a5s_A Dipeptidyl peptidase 4 99.8 2E-18 6.7E-23 176.7 27.6 326 36-460 17-434 (740)
161 3pe7_A Oligogalacturonate lyas 99.8 5.9E-19 2E-23 166.6 20.8 292 34-460 29-369 (388)
162 1z68_A Fibroblast activation p 99.8 5.9E-19 2E-23 180.4 18.7 279 117-461 20-375 (719)
163 2oiz_A Aromatic amine dehydrog 99.8 1.8E-16 6.2E-21 147.3 30.1 278 117-454 54-360 (361)
164 3c5m_A Oligogalacturonate lyas 99.8 2.8E-18 9.7E-23 162.3 16.6 285 36-461 36-370 (396)
165 1q7f_A NHL, brain tumor CG1071 99.8 1.6E-15 5.4E-20 136.5 33.0 264 12-430 8-281 (286)
166 4a5s_A Dipeptidyl peptidase 4 99.8 7.7E-17 2.6E-21 164.9 25.2 279 115-458 19-379 (740)
167 1jmx_B Amine dehydrogenase; ox 99.8 1.1E-16 3.7E-21 148.5 23.0 271 124-459 9-312 (349)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.3E-16 7.9E-21 147.3 24.2 259 34-371 38-341 (365)
169 3azo_A Aminopeptidase; POP fam 99.7 1.3E-15 4.4E-20 154.2 25.9 192 232-457 128-350 (662)
170 2dg1_A DRP35, lactonase; beta 99.7 1E-14 3.5E-19 134.3 24.5 274 36-460 6-298 (333)
171 3pe7_A Oligogalacturonate lyas 99.7 7.8E-15 2.7E-19 138.2 22.2 169 232-428 186-381 (388)
172 3fvz_A Peptidyl-glycine alpha- 99.7 5.5E-14 1.9E-18 129.0 25.6 253 35-371 23-322 (329)
173 2oiz_A Aromatic amine dehydrog 99.6 2E-14 6.9E-19 133.5 21.2 277 40-411 54-360 (361)
174 3e5z_A Putative gluconolactona 99.6 9.5E-14 3.3E-18 125.5 25.0 242 33-431 25-288 (296)
175 2gop_A Trilobed protease; beta 99.6 1.4E-13 4.9E-18 127.4 26.4 272 31-442 10-341 (347)
176 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-12 6.6E-17 126.3 34.5 324 34-439 195-547 (567)
177 1qks_A Cytochrome CD1 nitrite 99.6 4.6E-13 1.6E-17 130.7 29.8 306 45-459 165-520 (567)
178 2xdw_A Prolyl endopeptidase; a 99.6 1.3E-12 4.4E-17 133.0 31.2 247 113-431 125-416 (710)
179 3azo_A Aminopeptidase; POP fam 99.6 7.9E-14 2.7E-18 141.1 22.2 160 113-316 130-327 (662)
180 2z2n_A Virginiamycin B lyase; 99.6 8.6E-12 2.9E-16 112.6 33.5 282 34-430 13-296 (299)
181 2bkl_A Prolyl endopeptidase; m 99.6 1.1E-13 3.6E-18 140.6 23.0 251 33-432 118-400 (695)
182 3fvz_A Peptidyl-glycine alpha- 99.6 5E-13 1.7E-17 122.6 24.5 220 205-454 69-304 (329)
183 1q7f_A NHL, brain tumor CG1071 99.6 5.5E-12 1.9E-16 113.2 30.2 181 234-455 77-264 (286)
184 3c5m_A Oligogalacturonate lyas 99.6 3.7E-13 1.3E-17 127.0 23.4 262 40-432 85-387 (396)
185 2dg1_A DRP35, lactonase; beta 99.6 4.2E-12 1.4E-16 116.7 29.0 246 33-420 42-301 (333)
186 1rwi_B Serine/threonine-protei 99.6 2.9E-12 9.9E-17 114.0 25.9 240 37-432 25-267 (270)
187 3dsm_A Uncharacterized protein 99.5 5.1E-12 1.7E-16 115.7 27.0 253 115-449 46-319 (328)
188 2z2n_A Virginiamycin B lyase; 99.5 1.2E-10 4.2E-15 104.9 34.2 265 113-457 15-281 (299)
189 3e5z_A Putative gluconolactona 99.5 1E-11 3.5E-16 112.1 26.5 184 234-460 69-275 (296)
190 2gop_A Trilobed protease; beta 99.5 3.6E-12 1.2E-16 117.9 22.1 237 114-451 16-311 (347)
191 2xdw_A Prolyl endopeptidase; a 99.5 8.5E-12 2.9E-16 127.0 26.4 226 176-458 129-396 (710)
192 3sjl_D Methylamine dehydrogena 99.5 7.5E-11 2.6E-15 108.0 29.8 314 40-452 37-384 (386)
193 2qc5_A Streptogramin B lactona 99.5 2.1E-10 7.1E-15 103.5 32.8 279 35-428 19-299 (300)
194 1yr2_A Prolyl oligopeptidase; 99.5 1.4E-11 4.9E-16 125.8 27.2 245 113-432 163-444 (741)
195 3no2_A Uncharacterized protein 99.5 8E-11 2.7E-15 104.5 27.5 225 125-417 4-231 (276)
196 2bkl_A Prolyl endopeptidase; m 99.5 9.1E-12 3.1E-16 126.4 24.1 223 176-458 125-379 (695)
197 2mad_H Methylamine dehydrogena 99.5 3.9E-10 1.3E-14 104.6 33.0 297 42-436 27-356 (373)
198 3dsm_A Uncharacterized protein 99.4 2.2E-10 7.5E-15 104.8 30.2 252 36-384 44-313 (328)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.6E-10 5.5E-15 105.1 27.6 245 36-371 18-299 (314)
200 2qc5_A Streptogramin B lactona 99.4 7.1E-10 2.4E-14 100.0 31.6 264 113-455 20-285 (300)
201 3c75_H MADH, methylamine dehyd 99.4 1.9E-10 6.6E-15 107.3 27.8 308 45-452 82-423 (426)
202 3g4e_A Regucalcin; six bladed 99.4 5.1E-10 1.7E-14 100.8 27.9 233 37-418 14-261 (297)
203 1rwi_B Serine/threonine-protei 99.4 2.7E-10 9.3E-15 101.1 24.5 220 173-454 25-246 (270)
204 3g4e_A Regucalcin; six bladed 99.4 1.5E-09 5E-14 97.8 28.7 194 234-462 54-262 (297)
205 3no2_A Uncharacterized protein 99.3 5.9E-10 2E-14 98.9 25.0 216 196-459 6-230 (276)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3E-10 1E-14 103.2 23.5 249 114-430 19-300 (314)
207 3hrp_A Uncharacterized protein 99.3 2.7E-09 9.1E-14 100.5 30.4 268 114-428 132-409 (409)
208 3sjl_D Methylamine dehydrogena 99.3 4E-10 1.4E-14 103.2 23.7 270 122-459 40-348 (386)
209 3dr2_A Exported gluconolactona 99.3 4.5E-10 1.5E-14 101.7 23.2 235 33-423 42-301 (305)
210 2mad_H Methylamine dehydrogena 99.3 2E-09 7E-14 99.8 27.3 256 40-379 70-357 (373)
211 3iuj_A Prolyl endopeptidase; h 99.3 3.1E-10 1.1E-14 114.9 23.0 160 233-432 233-408 (693)
212 2ghs_A AGR_C_1268P; regucalcin 99.3 2.8E-09 9.7E-14 97.3 26.0 186 235-460 91-290 (326)
213 2ghs_A AGR_C_1268P; regucalcin 99.3 5.5E-09 1.9E-13 95.4 27.4 146 235-418 135-291 (326)
214 3hrp_A Uncharacterized protein 99.3 2.6E-09 8.8E-14 100.6 25.8 261 35-369 130-408 (409)
215 1xip_A Nucleoporin NUP159; bet 99.2 4.1E-10 1.4E-14 103.6 18.0 178 235-457 39-229 (388)
216 1yr2_A Prolyl oligopeptidase; 99.2 9.5E-10 3.2E-14 112.4 22.7 225 176-459 167-424 (741)
217 1xip_A Nucleoporin NUP159; bet 99.2 3.7E-10 1.3E-14 103.9 17.6 215 9-358 11-230 (388)
218 2qe8_A Uncharacterized protein 99.2 3.2E-09 1.1E-13 97.7 23.6 265 36-457 17-306 (343)
219 1mda_H Methylamine dehydrogena 99.2 4.9E-09 1.7E-13 96.2 24.4 266 117-451 69-366 (368)
220 3c75_H MADH, methylamine dehyd 99.2 1.9E-09 6.5E-14 100.6 20.9 258 40-379 122-409 (426)
221 2ece_A 462AA long hypothetical 99.1 3.5E-08 1.2E-12 91.0 26.1 155 253-417 227-399 (462)
222 3iuj_A Prolyl endopeptidase; h 99.1 1.5E-08 5.2E-13 102.5 22.5 165 254-459 208-388 (693)
223 1kb0_A Quinohemoprotein alcoho 99.1 1.5E-07 5E-12 94.5 29.4 192 237-457 246-535 (677)
224 1yiq_A Quinohemoprotein alcoho 99.0 2.4E-07 8E-12 93.2 29.8 200 238-458 239-534 (689)
225 3dr2_A Exported gluconolactona 99.0 3.6E-08 1.2E-12 89.1 21.2 220 176-459 49-294 (305)
226 2qe8_A Uncharacterized protein 99.0 1.8E-08 6.2E-13 92.6 17.3 233 33-361 64-310 (343)
227 2ece_A 462AA long hypothetical 99.0 3.2E-07 1.1E-11 84.6 24.0 287 137-460 44-399 (462)
228 1npe_A Nidogen, entactin; glyc 98.9 3.1E-06 1E-10 74.6 29.9 177 235-455 80-264 (267)
229 1mda_H Methylamine dehydrogena 98.9 3.5E-08 1.2E-12 90.5 17.4 256 40-385 69-359 (368)
230 2hz6_A Endoplasmic reticulum t 98.9 1.8E-09 6E-14 100.4 7.9 162 243-454 47-216 (369)
231 1fwx_A Nitrous oxide reductase 98.8 6.6E-07 2.3E-11 85.6 20.2 128 235-371 278-431 (595)
232 3q7m_A Lipoprotein YFGL, BAMB; 98.7 7.4E-06 2.5E-10 76.2 26.4 228 126-432 103-340 (376)
233 1kb0_A Quinohemoprotein alcoho 98.7 3E-06 1E-10 85.0 24.2 78 305-414 457-535 (677)
234 3hxj_A Pyrrolo-quinoline quino 98.7 3.3E-07 1.1E-11 83.6 15.8 199 197-454 109-307 (330)
235 1fwx_A Nitrous oxide reductase 98.7 9.2E-07 3.1E-11 84.6 18.8 101 343-460 278-406 (595)
236 3hxj_A Pyrrolo-quinoline quino 98.7 7E-06 2.4E-10 74.7 23.6 218 127-430 108-325 (330)
237 2iwa_A Glutamine cyclotransfer 98.7 1.4E-05 4.6E-10 69.3 23.6 211 31-315 14-238 (266)
238 1yiq_A Quinohemoprotein alcoho 98.6 6.6E-06 2.2E-10 82.8 24.1 78 304-413 454-532 (689)
239 1kv9_A Type II quinohemoprotei 98.6 4.2E-05 1.4E-09 76.6 29.7 177 238-439 234-497 (668)
240 3nol_A Glutamine cyclotransfer 98.6 1E-05 3.4E-10 69.2 20.7 191 36-302 43-244 (262)
241 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.8E-05 6.2E-10 73.5 24.5 222 127-426 144-375 (376)
242 2fp8_A Strictosidine synthase; 98.6 1.4E-05 4.7E-10 72.6 23.0 116 285-430 187-314 (322)
243 4a2l_A BT_4663, two-component 98.5 0.00035 1.2E-08 71.9 33.5 325 38-455 133-465 (795)
244 4a2l_A BT_4663, two-component 98.5 0.00077 2.6E-08 69.3 35.8 334 38-458 175-514 (795)
245 2iwa_A Glutamine cyclotransfer 98.5 2.4E-05 8.2E-10 67.7 20.1 185 235-459 22-223 (266)
246 2ad6_A Methanol dehydrogenase 98.5 0.00024 8.2E-09 69.7 29.1 78 362-457 444-522 (571)
247 3qqz_A Putative uncharacterize 98.5 0.00013 4.4E-09 62.7 23.6 220 113-369 27-251 (255)
248 2p4o_A Hypothetical protein; p 98.4 0.0006 2.1E-08 61.1 28.7 105 284-420 170-279 (306)
249 3nol_A Glutamine cyclotransfer 98.4 3.9E-05 1.3E-09 65.6 19.2 183 234-458 43-241 (262)
250 1npe_A Nidogen, entactin; glyc 98.4 0.00054 1.8E-08 60.0 27.6 134 236-411 124-263 (267)
251 3v65_B Low-density lipoprotein 98.4 0.00099 3.4E-08 61.9 30.5 176 237-454 162-343 (386)
252 3v64_C Agrin; beta propeller, 98.4 0.0013 4.3E-08 60.2 31.7 177 236-454 118-300 (349)
253 3nok_A Glutaminyl cyclase; bet 98.4 7.1E-05 2.4E-09 64.0 19.9 190 37-302 56-254 (268)
254 2p4o_A Hypothetical protein; p 98.4 0.00056 1.9E-08 61.3 27.2 194 235-461 73-277 (306)
255 3nok_A Glutaminyl cyclase; bet 98.4 4.2E-05 1.5E-09 65.3 18.2 182 234-458 55-251 (268)
256 3mbr_X Glutamine cyclotransfer 98.3 0.00035 1.2E-08 59.2 22.4 191 36-302 21-223 (243)
257 1ijq_A LDL receptor, low-densi 98.2 0.0025 8.4E-08 57.4 31.0 247 136-453 10-262 (316)
258 3mbr_X Glutamine cyclotransfer 98.2 0.00037 1.3E-08 59.0 21.1 183 234-458 21-220 (243)
259 2hz6_A Endoplasmic reticulum t 98.2 2.3E-07 7.7E-12 86.1 1.4 142 244-432 8-152 (369)
260 3qqz_A Putative uncharacterize 98.2 0.00092 3.1E-08 57.4 23.5 217 176-428 31-252 (255)
261 1flg_A Protein (quinoprotein e 98.2 0.0016 5.5E-08 63.9 27.6 80 361-458 465-545 (582)
262 1w6s_A Methanol dehydrogenase 98.2 0.0072 2.4E-07 59.3 31.8 75 238-319 245-347 (599)
263 3v9f_A Two-component system se 98.2 0.01 3.4E-07 60.9 35.8 335 35-456 257-597 (781)
264 2xe4_A Oligopeptidase B; hydro 98.2 0.00091 3.1E-08 68.1 26.1 31 37-67 175-211 (751)
265 1k3i_A Galactose oxidase precu 98.1 0.00061 2.1E-08 68.3 23.9 34 117-152 247-281 (656)
266 3tc9_A Hypothetical hydrolase; 98.1 0.0026 8.8E-08 59.9 26.5 267 114-428 138-429 (430)
267 3p5b_L Low density lipoprotein 98.1 0.0062 2.1E-07 56.7 30.4 254 128-454 85-345 (400)
268 2xe4_A Oligopeptidase B; hydro 98.1 6.4E-05 2.2E-09 76.6 16.3 113 235-371 175-304 (751)
269 4hw6_A Hypothetical protein, I 98.1 0.0049 1.7E-07 58.1 27.9 265 115-428 141-432 (433)
270 1kv9_A Type II quinohemoprotei 98.1 0.00082 2.8E-08 67.3 23.7 63 304-384 437-500 (668)
271 3v9f_A Two-component system se 98.1 0.014 4.9E-07 59.7 35.8 331 36-456 211-553 (781)
272 3kya_A Putative phosphatase; s 98.1 0.0063 2.2E-07 57.6 27.7 278 114-432 140-478 (496)
273 1k3i_A Galactose oxidase precu 98.0 0.00099 3.4E-08 66.8 21.9 283 117-461 190-530 (656)
274 3m0c_C LDL receptor, low-densi 97.9 0.018 6.1E-07 58.4 30.4 249 134-454 402-657 (791)
275 4hw6_A Hypothetical protein, I 97.9 0.016 5.5E-07 54.5 27.6 173 173-370 229-432 (433)
276 2fp8_A Strictosidine synthase; 97.9 0.0018 6E-08 58.5 20.4 186 235-454 20-241 (322)
277 3tc9_A Hypothetical hydrolase; 97.9 0.0061 2.1E-07 57.4 24.3 253 37-370 138-429 (430)
278 2ad6_A Methanol dehydrogenase 97.9 0.0044 1.5E-07 60.7 23.7 62 304-383 443-505 (571)
279 1n7d_A LDL receptor, low-densi 97.8 0.0006 2E-08 68.6 17.0 245 135-450 385-634 (699)
280 3sre_A PON1, serum paraoxonase 97.8 0.014 4.7E-07 52.9 23.3 192 235-455 51-280 (355)
281 3v65_B Low-density lipoprotein 97.7 0.017 5.7E-07 53.5 23.6 175 234-449 116-296 (386)
282 1ijq_A LDL receptor, low-densi 97.6 0.034 1.2E-06 49.8 29.1 209 113-380 30-246 (316)
283 3sov_A LRP-6, low-density lipo 97.6 0.035 1.2E-06 49.8 29.3 219 176-454 39-263 (318)
284 3v64_C Agrin; beta propeller, 97.6 0.042 1.4E-06 50.0 26.0 175 234-449 73-253 (349)
285 3s94_A LRP-6, low-density lipo 97.6 0.075 2.6E-06 52.5 33.0 204 34-316 38-245 (619)
286 3ei3_A DNA damage-binding prot 97.5 0.14 4.8E-06 54.4 32.2 34 35-68 553-593 (1158)
287 1flg_A Protein (quinoprotein e 97.5 0.074 2.5E-06 52.1 26.3 63 304-384 465-528 (582)
288 2xbg_A YCF48-like protein; pho 97.5 0.052 1.8E-06 48.9 32.0 159 232-427 161-320 (327)
289 3sov_A LRP-6, low-density lipo 97.5 0.054 1.8E-06 48.5 25.2 206 114-380 36-246 (318)
290 1w6s_A Methanol dehydrogenase 97.4 0.048 1.7E-06 53.5 23.9 32 352-384 483-515 (599)
291 2p9w_A MAL S 1 allergenic prot 97.4 0.026 8.9E-07 50.0 19.3 178 234-429 13-215 (334)
292 3sre_A PON1, serum paraoxonase 97.3 0.083 2.8E-06 47.8 22.6 187 234-460 112-332 (355)
293 3p5b_L Low density lipoprotein 97.3 0.12 4E-06 48.0 27.0 209 113-380 112-328 (400)
294 2xbg_A YCF48-like protein; pho 97.3 0.1 3.5E-06 47.0 25.4 118 232-369 203-320 (327)
295 2p9w_A MAL S 1 allergenic prot 97.2 0.093 3.2E-06 46.5 20.5 77 283-371 137-215 (334)
296 1n7d_A LDL receptor, low-densi 97.2 0.007 2.4E-07 60.8 15.1 208 36-317 406-617 (699)
297 3m0c_C LDL receptor, low-densi 97.2 0.27 9.2E-06 49.9 27.8 207 113-379 424-639 (791)
298 4a0p_A LRP6, LRP-6, low-densit 97.1 0.25 8.4E-06 48.9 30.2 247 128-452 8-260 (628)
299 3pbp_A Nucleoporin NUP82; beta 97.1 0.088 3E-06 48.2 20.0 165 240-425 27-208 (452)
300 2ism_A Putative oxidoreductase 97.0 0.11 3.7E-06 47.3 20.3 56 403-459 272-332 (352)
301 3a9g_A Putative uncharacterize 97.0 0.16 5.5E-06 46.2 20.9 56 402-457 262-327 (354)
302 2g8s_A Glucose/sorbosone dehyd 96.9 0.17 6E-06 45.9 21.0 57 401-457 273-338 (353)
303 3amr_A 3-phytase; beta-propell 96.9 0.16 5.4E-06 45.5 19.5 203 197-437 42-271 (355)
304 3das_A Putative oxidoreductase 96.8 0.26 8.8E-06 44.4 24.6 33 35-67 31-63 (347)
305 3a9g_A Putative uncharacterize 96.8 0.27 9.4E-06 44.6 24.8 65 283-360 259-330 (354)
306 3kya_A Putative phosphatase; s 96.8 0.052 1.8E-06 51.4 16.4 144 283-455 139-323 (496)
307 4a0p_A LRP6, LRP-6, low-densit 96.8 0.5 1.7E-05 46.7 36.5 199 35-315 36-238 (628)
308 3ei3_A DNA damage-binding prot 96.7 0.83 2.8E-05 48.6 34.3 43 111-153 552-599 (1158)
309 2g8s_A Glucose/sorbosone dehyd 96.7 0.34 1.2E-05 44.0 25.4 64 283-360 271-341 (353)
310 3amr_A 3-phytase; beta-propell 96.7 0.31 1.1E-05 43.6 22.2 110 197-313 145-262 (355)
311 2ism_A Putative oxidoreductase 96.4 0.21 7.1E-06 45.4 17.1 113 234-358 31-151 (352)
312 3pbp_A Nucleoporin NUP82; beta 96.4 0.13 4.6E-06 47.1 15.2 125 235-366 67-207 (452)
313 3das_A Putative oxidoreductase 96.2 0.45 1.5E-05 42.8 18.0 114 234-358 32-156 (347)
314 1tl2_A L10, protein (tachylect 96.1 0.24 8.1E-06 40.9 14.2 147 284-459 42-199 (236)
315 1tl2_A L10, protein (tachylect 96.1 0.29 9.8E-06 40.4 14.7 115 234-365 41-157 (236)
316 1cru_A Protein (soluble quinop 95.9 0.59 2E-05 44.1 18.1 117 234-359 27-161 (454)
317 2xzh_A Clathrin heavy chain 1; 95.3 1.5 5E-05 38.8 24.8 188 235-451 108-311 (365)
318 3s94_A LRP-6, low-density lipo 94.4 4.2 0.00014 40.1 36.9 172 247-457 319-494 (619)
319 3s25_A Hypothetical 7-bladed b 94.4 2.4 8.3E-05 37.3 16.8 137 239-430 109-256 (302)
320 2xzh_A Clathrin heavy chain 1; 94.1 3 0.0001 36.9 27.4 167 234-431 152-334 (365)
321 2vpj_A Kelch-like protein 12; 93.5 3.5 0.00012 36.0 21.2 148 244-432 112-281 (301)
322 1bpo_A Protein (clathrin); cla 92.7 6.2 0.00021 36.4 27.3 186 235-451 107-310 (494)
323 2uvk_A YJHT; unknown function, 92.2 6.2 0.00021 35.5 20.4 27 407-433 314-346 (357)
324 1bpo_A Protein (clathrin); cla 92.0 7.6 0.00026 35.9 28.6 167 234-431 151-333 (494)
325 2wg3_C Hedgehog-interacting pr 91.9 8.3 0.00028 36.3 19.8 60 234-293 14-79 (463)
326 2xn4_A Kelch-like protein 2; s 91.7 6.3 0.00022 34.4 21.2 24 409-432 251-279 (302)
327 3ii7_A Kelch-like protein 7; p 91.6 6.5 0.00022 34.4 22.9 24 409-432 247-275 (306)
328 1xi4_A Clathrin heavy chain; a 91.4 12 0.00041 40.4 18.3 183 235-449 107-308 (1630)
329 3s25_A Hypothetical 7-bladed b 90.4 8.6 0.00029 33.7 23.7 105 239-379 150-261 (302)
330 1zgk_A Kelch-like ECH-associat 88.6 12 0.00041 32.7 21.1 148 244-432 121-290 (308)
331 1cru_A Protein (soluble quinop 87.9 18 0.00061 33.9 27.9 36 114-152 28-64 (454)
332 1xi4_A Clathrin heavy chain; a 87.4 36 0.0012 36.9 19.9 131 234-380 151-297 (1630)
333 3sbq_A Nitrous-oxide reductase 85.6 12 0.0004 35.9 12.3 79 234-314 323-408 (638)
334 2wg3_C Hedgehog-interacting pr 83.5 18 0.00061 34.0 13.0 31 283-313 14-44 (463)
335 2vpj_A Kelch-like protein 12; 81.9 25 0.00084 30.4 20.2 29 125-153 112-145 (301)
336 3sbq_A Nitrous-oxide reductase 79.5 8.2 0.00028 36.9 8.8 76 342-429 323-408 (638)
337 1zgk_A Kelch-like ECH-associat 78.3 33 0.0011 29.8 22.5 64 244-316 168-242 (308)
338 3ott_A Two-component system se 78.3 60 0.002 32.7 32.8 174 234-432 324-505 (758)
339 4gq2_M Nucleoporin NUP120; bet 76.9 61 0.0021 33.7 15.5 40 114-155 237-276 (950)
340 4asc_A Kelch repeat and BTB do 74.5 43 0.0015 29.1 21.0 23 293-316 148-176 (315)
341 4gq2_M Nucleoporin NUP120; bet 74.3 30 0.001 36.1 12.4 32 401-432 238-269 (950)
342 2woz_A Kelch repeat and BTB do 73.0 47 0.0016 28.9 19.0 24 292-316 157-186 (318)
343 3ii7_A Kelch-like protein 7; p 72.0 48 0.0016 28.6 19.8 27 125-151 101-133 (306)
344 2be1_A Serine/threonine-protei 71.7 9.2 0.00031 34.1 6.8 112 296-438 11-138 (339)
345 4asc_A Kelch repeat and BTB do 69.5 56 0.0019 28.4 15.5 24 409-432 196-224 (315)
346 2zwa_A Leucine carboxyl methyl 69.1 96 0.0033 30.9 16.4 157 244-432 451-638 (695)
347 3f7f_A Nucleoporin NUP120; nuc 67.1 64 0.0022 32.0 12.0 37 114-154 223-259 (729)
348 4fhn_B Nucleoporin NUP120; pro 64.9 22 0.00076 37.9 9.3 32 401-432 240-271 (1139)
349 2xn4_A Kelch-like protein 2; s 64.0 70 0.0024 27.5 19.5 28 125-152 108-140 (302)
350 2be1_A Serine/threonine-protei 63.2 82 0.0028 28.0 19.5 29 127-155 11-39 (339)
351 2zwa_A Leucine carboxyl methyl 60.2 1.4E+02 0.0048 29.7 18.8 70 243-316 499-579 (695)
352 3f7f_A Nucleoporin NUP120; nuc 59.3 50 0.0017 32.8 9.7 25 408-432 229-253 (729)
353 4fhn_B Nucleoporin NUP120; pro 51.9 83 0.0028 33.6 10.9 39 115-155 240-278 (1139)
354 3zwu_A Alkaline phosphatase PH 51.3 53 0.0018 31.9 8.4 59 343-416 477-548 (592)
355 4a9v_A PHOX; hydrolase, beta-p 50.4 78 0.0027 30.5 9.2 61 342-417 476-549 (592)
356 4hvt_A Ritya.17583.B, post-pro 49.4 2.1E+02 0.0072 28.5 16.2 29 237-265 132-167 (711)
357 3q6k_A 43.2 kDa salivary prote 48.8 1.5E+02 0.0053 26.7 20.4 156 256-429 125-306 (381)
358 3zwu_A Alkaline phosphatase PH 44.8 96 0.0033 30.1 9.1 60 284-359 477-548 (592)
359 2loj_A Putative cytoplasmic pr 44.0 39 0.0013 21.1 4.0 39 13-52 24-62 (63)
360 3uc1_A DNA gyrase subunit A; D 43.1 1.7E+02 0.0059 25.7 19.1 174 113-314 95-279 (327)
361 2uvk_A YJHT; unknown function, 43.0 1.7E+02 0.0059 25.7 18.4 18 136-153 168-185 (357)
362 3q6k_A 43.2 kDa salivary prote 40.2 2.1E+02 0.0072 25.8 19.1 60 237-302 278-342 (381)
363 4a9v_A PHOX; hydrolase, beta-p 39.5 1.4E+02 0.0048 28.8 9.1 61 283-359 476-548 (592)
364 2woz_A Kelch repeat and BTB do 31.8 2.5E+02 0.0084 24.1 17.5 28 125-152 109-143 (318)
365 3ott_A Two-component system se 28.1 4.6E+02 0.016 26.1 36.0 191 235-454 233-431 (758)
366 1zi0_A DNA gyrase subunit A; b 27.5 3E+02 0.01 23.8 18.7 33 113-145 95-128 (307)
367 3qhy_B Beta-lactamase inhibito 24.5 3.2E+02 0.011 23.1 18.8 146 234-430 102-247 (282)
368 3qhy_B Beta-lactamase inhibito 23.6 3.4E+02 0.012 23.0 15.0 105 235-371 25-129 (282)
369 3mez_A Mannose-specific lectin 21.1 2.2E+02 0.0076 20.0 6.0 25 346-370 53-77 (111)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=360.53 Aligned_cols=399 Identities=56% Similarity=0.924 Sum_probs=296.1
Q ss_pred cccccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcc
Q 011257 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (490)
Q Consensus 11 ~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (490)
+..++.|+|.|+|++. .++++|.+.|++++|+|+|++||+|+.||.|+|||+.+++... ....+++
T Consensus 6 ~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~ 71 (447)
T 3dw8_B 6 GGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEY 71 (447)
T ss_dssp --CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCE
T ss_pred CCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccce
Confidence 4468899999999974 4478899999999999999999999999999999998765210 0011234
Q ss_pred ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccc
Q 011257 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (490)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
+....+.+|.+++++++++.+.+.|++++|+|..+..+|++++.|++|++||+.++...... ....
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~------------- 137 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK------------- 137 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------------
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-eccc-------------
Confidence 45677899999999999999999999999998543369999999999999999876543211 0000
Q ss_pred ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 171 ~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
..+|. +.....-..+.+.. ....+......+.+.+..+|...|.+++|+|++++|++
T Consensus 138 ---------~~~g~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 138 ---------EEDGR-------------YRDPTTVTTLRVPV-FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp ------------------------------CCCCCSCCCCE-EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred ---------Ccccc-------------ccCcccccceEecc-ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 00000 00000000000000 00000111122333444789999999999999999999
Q ss_pred ecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 251 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
|.|+.|++||++........+..++..+.+|...|.+++|+|++..+|++|+.||.|++||+++++.+...+..+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999866667776666666788999999999999997679999999999999999998765444577777766
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
+.....+.+|...|.+++|+|+|++|++++++.|++||+++.++++..+.+|......++..+..+.+++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55556677777899999999999999998779999999986578889999998766666666666666666679999999
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccC---------------------------------CCceEEEEEccCCCCCC
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEAS---------------------------------KNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~---------------------------------~~~v~~~~~sp~~~~~~ 457 (490)
++|++|+.||.|++||+.+++.. .+..| ...|..++|+|+++..+
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la 432 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRDI--TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA 432 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCEE--EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE
T ss_pred CEEEEeccCCEEEEEEcCCCcce--eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE
Confidence 99999999999999999988762 33332 35688899999999877
Q ss_pred CCccC
Q 011257 458 LGSLS 462 (490)
Q Consensus 458 ~~~~~ 462 (490)
.++.+
T Consensus 433 ~~~~~ 437 (447)
T 3dw8_B 433 VATTN 437 (447)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 66544
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.5e-45 Score=366.57 Aligned_cols=393 Identities=16% Similarity=0.140 Sum_probs=276.6
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCC-CcccccccccceeecCCcccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG-GQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~ 92 (490)
...|+... ........+|.+.|++++|||||++||+|+.||+|+|||+.+++... .....+...+.+++|+|+.+.
T Consensus 41 v~l~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 41 VYTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp EEEEETTC---SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEecCCC---cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCE
Confidence 44577654 11222345799999999999999999999999999999997554321 122335677889999998876
Q ss_pred ccccccCCc---c---c---ceeeee-eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCC
Q 011257 93 KTEFQSHEP---E---F---DYLKSL-EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (490)
Q Consensus 93 ~~~~~~h~~---~---~---~~~~~~-~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 162 (490)
+........ . + ..+..+ .|...|++++|+|+. ...|++++.|++|++||...++....+..+.
T Consensus 118 l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~------ 190 (611)
T 1nr0_A 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHT------ 190 (611)
T ss_dssp EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCS------
T ss_pred EEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeecccc------
Confidence 543211000 0 0 001111 344889999999732 2369999999999999998877655443321
Q ss_pred CCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeec------cccccce
Q 011257 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA------HAHDYHI 236 (490)
Q Consensus 163 ~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~------~~~~~~v 236 (490)
+.+. +++|+|+|+ +|++++.|++|++||+... ++...+. .+|...|
T Consensus 191 --~~V~-------~v~fspdg~------------~las~s~D~~i~lwd~~~g-------~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 191 --KFVH-------SVRYNPDGS------------LFASTGGDGTIVLYNGVDG-------TKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp --SCEE-------EEEECTTSS------------EEEEEETTSCEEEEETTTC-------CEEEECBCTTSSSCSSSSCE
T ss_pred --CceE-------EEEECCCCC------------EEEEEECCCcEEEEECCCC-------cEeeeeccccccccccCCCE
Confidence 2233 889999999 8999999999999993211 1222221 2799999
Q ss_pred eEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec--------------------------------C----CCccC
Q 011257 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--------------------------------K----PANME 279 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~--------------------------------~----~~~~~ 279 (490)
.+++|+|++++|+++ .|++|++||+.+.. ....+.. . ...+.
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCc-eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 999999999999999 89999999998543 2221110 0 01346
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccc---------------------------cceec------
Q 011257 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------------------------SKLFE------ 326 (490)
Q Consensus 280 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------------~~~~~------ 326 (490)
+|...|++++|+|++ ++|++++.|++|++||+.+++..... ++.+.
T Consensus 322 gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 322 GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 899999999999999 99999999999999999865321000 00000
Q ss_pred -------------------------------------------------------cccCC---------C----------
Q 011257 327 -------------------------------------------------------EQEAP---------G---------- 332 (490)
Q Consensus 327 -------------------------------------------------------~~~~~---------~---------- 332 (490)
-..+. .
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~ 480 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETT
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCC
Confidence 00000 0
Q ss_pred cc--ccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceee--eeeeccccccccccccCCCccceeeEEEc
Q 011257 333 TR--SFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 333 ~~--~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
.. ....+|...|++++|+|||++|++++ |++|++||+.+.++.+.. +..|... |++++|+
T Consensus 481 ~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~---------------V~~v~fs 545 (611)
T 1nr0_A 481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK---------------VACVSWS 545 (611)
T ss_dssp EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC---------------EEEEEEC
T ss_pred ceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc---------------eeEEEEC
Confidence 00 01135788899999999999999975 699999999852333322 2225443 6799999
Q ss_pred CCCCEEEEeecCCeEEEEecCCCceee-eEeccC-CCceEEEEEccCCCCCCCCccC
Q 011257 408 GDGGRVATGSYSNLFRVFGCSEGSAES-TTLEAS-KNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~-~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
|||++||+|+.|++|++|++.+++... ..+.+| ...|.+++|+|++. .+.++.+
T Consensus 546 pdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D 601 (611)
T 1nr0_A 546 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQD 601 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETT
T ss_pred CCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCC
Confidence 999999999999999999999876433 677899 89999999999998 4444333
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-43 Score=323.39 Aligned_cols=287 Identities=19% Similarity=0.308 Sum_probs=235.3
Q ss_pred cccccccEEEEEECCC----CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccccee
Q 011257 31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~d----g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (490)
...|.+.|++++|+|+ +.+||+|+.|++|+||++...+. .....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---------------------~~~~~l~gh~------ 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---------------------DLQWSLEGHQ------ 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---------------------eeeeeeccCC------
Confidence 3479999999999985 66999999999999999976541 1234578898
Q ss_pred eeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 107 ~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..|.+++|+| ++.++++++.|++|++||+.+++......... .....++|+|+++
T Consensus 81 ------~~v~~~~~~~--~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~---------------~~~~~~~~spdg~-- 135 (321)
T 3ow8_A 81 ------LGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGP---------------VDAWTLAFSPDSQ-- 135 (321)
T ss_dssp ------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEEEECCT---------------TCCCCEEECTTSS--
T ss_pred ------CCEEEEEECC--CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC---------------ccEEEEEECCCCC--
Confidence 8899999996 56799999999999999999987665544321 1122789999999
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
++++++.++.+++|++ .. ......+ ..|...|.+++|+|++++|++| .|+.|++||+++.
T Consensus 136 ----------~l~~g~~dg~v~i~~~-~~------~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~- 196 (321)
T 3ow8_A 136 ----------YLATGTHVGKVNIFGV-ES------GKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG- 196 (321)
T ss_dssp ----------EEEEECTTSEEEEEET-TT------CSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred ----------EEEEEcCCCcEEEEEc-CC------CceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 8999999999999992 21 1222222 5677889999999999999999 8999999999854
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
+... .+.+|...|.+++|+|++ .+|++|+.|++|++||+++++. ...+.+ |...|.
T Consensus 197 ~~~~-------~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~----~~~~~~------------h~~~v~ 252 (321)
T 3ow8_A 197 KLLH-------TLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANL----AGTLSG------------HASWVL 252 (321)
T ss_dssp EEEE-------EECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCE----EEEECC------------CSSCEE
T ss_pred cEEE-------EEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcce----eEEEcC------------CCCceE
Confidence 3333 357899999999999999 9999999999999999998653 244444 447899
Q ss_pred EEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
+++|+|++++|++++ |++|++||+.+ ++++.++.+|... |++++|+|++++|++++.||.|++
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVHTFFDHQDQ---------------VWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC-CEEEEEEcCCCCc---------------EEEEEECCCCCEEEEEeCCCeEEE
Confidence 999999999999974 69999999997 8888898888765 569999999999999999999999
Q ss_pred EecC
Q 011257 425 FGCS 428 (490)
Q Consensus 425 w~~~ 428 (490)
||+.
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9974
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-43 Score=336.67 Aligned_cols=285 Identities=17% Similarity=0.295 Sum_probs=240.1
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.++|++++|+|++++||+|+.||+|+|||+.+++. ...+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~---------- 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------- 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS----------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC----------
Confidence 457999999999999999999999999999999987763 46688898
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++++|+| ++.+|++|+.|++|++||+.+++.......+. +.+ .+++|+|++.
T Consensus 151 --~~V~~v~~~~--~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--------~~V-------~~v~~~p~~~------ 205 (410)
T 1vyh_C 151 --DSVQDISFDH--SGKLLASCSADMTIKLWDFQGFECIRTMHGHD--------HNV-------SSVSIMPNGD------ 205 (410)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSCCCEEETTSSCEEECCCCCS--------SCE-------EEEEECSSSS------
T ss_pred --CcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--------CCE-------EEEEEeCCCC------
Confidence 8899999996 66799999999999999999887655433221 122 2789999998
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
++++++.|++|++||+ . ...+...+ .+|...|.+++++|++++|++| .|+.|++||+.+.... .
T Consensus 206 ------~l~s~s~D~~i~~wd~-~------~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-~ 270 (410)
T 1vyh_C 206 ------HIVSASRDKTIKMWEV-Q------TGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-A 270 (410)
T ss_dssp ------EEEEEETTSEEEEEET-T------TCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-E
T ss_pred ------EEEEEeCCCeEEEEEC-C------CCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-e
Confidence 8999999999999992 1 23344454 7899999999999999999999 8999999999855433 2
Q ss_pred eeecCCCccCCCCCceEEEEEcCC--------------------CCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPT--------------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~--------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
.+.+|...|.+++|+|+ + .+|++|+.|++|++||++++.. +..+.+|
T Consensus 271 -------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~----~~~~~~h- 337 (410)
T 1vyh_C 271 -------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMC----LMTLVGH- 337 (410)
T ss_dssp -------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEE----EEEEECC-
T ss_pred -------EecCCCceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCce----EEEEECC-
Confidence 35789999999999996 4 6899999999999999998764 3455544
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
...|++++|+|+|++|++|+ |+.|++||+.+ ++++..+.+|... |++++|+|
T Consensus 338 -----------~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~---------------v~~l~~~~ 390 (410)
T 1vyh_C 338 -----------DNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHF---------------VTSLDFHK 390 (410)
T ss_dssp -----------SSCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSC---------------EEEEEECS
T ss_pred -----------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCc---------------EEEEEEcC
Confidence 47899999999999999975 69999999987 8889999988876 56999999
Q ss_pred CCCEEEEeecCCeEEEEecC
Q 011257 409 DGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~ 428 (490)
++++|++|+.||.|+||+++
T Consensus 391 ~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSCEEEEETTSEEEEEC--
T ss_pred CCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999964
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.8e-42 Score=315.02 Aligned_cols=273 Identities=16% Similarity=0.212 Sum_probs=230.9
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|++++||+|+.||.|++||+.++. .+..+..|.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~---------- 55 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE---------- 55 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC----------
Confidence 34789999999999999999999999999999998765 245677787
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++|+| ++++|++|+.|++|++||+.+++....
T Consensus 56 --~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~--------------------------------------- 92 (304)
T 2ynn_A 56 --TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------- 92 (304)
T ss_dssp --SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 7899999997 567999999999999999988754321
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+.+|...|.+++|+|++++|++| .|+.|++||++.......
T Consensus 93 --------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred --------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 25677889999999999999999 899999999985544433
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+.+|...|.+++|+|++..+|++|+.|++|++||++++... ..+.. +|...+..++|
T Consensus 135 -------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~v~~~~~ 192 (304)
T 2ynn_A 135 -------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLTT-----------GQERGVNYVDY 192 (304)
T ss_dssp -------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEEEC-----------CCTTCEEEEEE
T ss_pred -------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----ceecc-----------CCcCcEEEEEE
Confidence 357899999999999954389999999999999999876432 22221 22367889999
Q ss_pred CC--CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 350 AR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 350 sp--~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+| ++++|++|+ |++|++||+++ ++++..+.+|... |.+++|+|++++|++|+.||.|++||
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 87 788999975 69999999997 8889999998766 56999999999999999999999999
Q ss_pred cCCCceeeeEeccCCCceEEEEEccCCCCC
Q 011257 427 CSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 456 (490)
+.+++. +..+..|...+.+++|+|++...
T Consensus 257 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 257 SSTYKV-EKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp TTTCCE-EEEECCSSSSEEEEEECTTCGGG
T ss_pred CCCCce-eeeccCCCccEEEEEECCCCCce
Confidence 999987 68899999999999999998654
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-41 Score=315.19 Aligned_cols=286 Identities=16% Similarity=0.281 Sum_probs=230.7
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|.+.|++++|+||+++||+|+.||.|++||..++.. ...+..|.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~---------- 97 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC----------
Confidence 457999999999999999999999999999999876652 35566777
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE--EEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..|.+++|+| ++.++++++.|+.|++|++.+... ........+ .+.+. ++.|++++.
T Consensus 98 --~~v~~~~~s~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h------~~~v~-------~~~~~~~~~---- 156 (340)
T 1got_B 98 --SWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH------TGYLS-------CCRFLDDNQ---- 156 (340)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC------SSCEE-------EEEEEETTE----
T ss_pred --ccEEEEEECC--CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC------CccEE-------EEEECCCCc----
Confidence 7799999997 677999999999999999986531 111111111 11222 667777764
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
+++++.|++|++||+ . ...+...+ .+|...|.+++|+|++++|++| .|+.|++||+++.. .
T Consensus 157 ---------l~s~s~d~~i~~wd~-~------~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~ 218 (340)
T 1got_B 157 ---------IVTSSGDTTCALWDI-E------TGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-C 218 (340)
T ss_dssp ---------EEEEETTSCEEEEET-T------TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-E
T ss_pred ---------EEEEECCCcEEEEEC-C------CCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-e
Confidence 788999999999992 1 12333444 7899999999999999999999 89999999998544 3
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
.. .+.+|...|.+++|+|++ .+|++|+.||+|++||+++++.. ..+... .+...|.++
T Consensus 219 ~~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~----~~~~~~----------~~~~~v~~~ 276 (340)
T 1got_B 219 RQ-------TFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSHD----------NIICGITSV 276 (340)
T ss_dssp EE-------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECCT----------TCCSCEEEE
T ss_pred EE-------EEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEE----EEEccC----------CcccceEEE
Confidence 33 357899999999999999 99999999999999999987532 233211 122579999
Q ss_pred EECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 348 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 348 ~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
+|+|+|++|++|+ |+.|++||+.+ ++.+..+.+|... |.+++|+|++++|++|+.||.|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALK-ADRAGVLAGHDNR---------------VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEccc-CcEeeEeecCCCc---------------EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999985 69999999997 8888899988876 56999999999999999999999997
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-41 Score=340.95 Aligned_cols=367 Identities=13% Similarity=0.133 Sum_probs=255.3
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..+.+.+.+++|+|||++||+++ ++.|++|++.++.. ...+.+|.
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~-----------------------~~~~~~h~----------- 59 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS----------- 59 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS-----------
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc-----------------------CeEecCCC-----------
Confidence 45678899999999999999997 56999999976552 46688998
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc--
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN-- 189 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-- 189 (490)
..|++++|+| +|.+|++|+.|++|+|||+.+++.........+ .+.+. +++|+|+|+.+...
T Consensus 60 -~~v~~~~~sp--dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~------~~~v~-------~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 60 -HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF------SGPVK-------DISWDSESKRIAAVGE 123 (611)
T ss_dssp -SCEEEEEECT--TSSEEEEEETTSEEEEEESSSTTCCEEEEEECS------SSCEE-------EEEECTTSCEEEEEEC
T ss_pred -CceEEEEECC--CCcEEEEEeCCCCEEEeECCCCcceeeEeeccc------CCceE-------EEEECCCCCEEEEEEC
Confidence 8899999997 678999999999999999975432111111111 01111 34444444321100
Q ss_pred ----------------------------cc-c-CCCC-ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeE
Q 011257 190 ----------------------------FG-C-ASND-SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238 (490)
Q Consensus 190 ----------------------------~~-~-~~~~-~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 238 (490)
.. + +... .+++++.|++|++|| . ...++...+ .+|...|.+
T Consensus 124 ~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd-~------~~~~~~~~l-~~H~~~V~~ 195 (611)
T 1nr0_A 124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-G------PPFKFKSTF-GEHTKFVHS 195 (611)
T ss_dssp CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE-T------TTBEEEEEE-CCCSSCEEE
T ss_pred CCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE-C------CCCeEeeee-ccccCceEE
Confidence 00 0 1111 589999999999999 2 123344444 789999999
Q ss_pred EEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 239 i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
++|+|++++|+++ .|+.|++||+.+... ...+........+|...|.+++|+|++ .+|++++.|++|++||+++++.
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCce
Confidence 9999999999999 899999999985443 332211111123799999999999999 9999999999999999998754
Q ss_pred cccccceecccc-------------------------------CCCccccccccccceEEEEECCCCCEEEEEc-CCeEE
Q 011257 318 CDTHSKLFEEQE-------------------------------APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (490)
Q Consensus 318 ~~~~~~~~~~~~-------------------------------~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~ 365 (490)
. ..+..+. .......+.+|...|++++|+|||++|++++ |++|+
T Consensus 274 ~----~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 274 E----KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp E----EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred e----eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 2 2221110 0001234567999999999999999999975 69999
Q ss_pred EEeccCCCCceeee-eeeccccccccc-------------------------------------------c---------
Q 011257 366 LWDINMDSGPVATF-QVHEHLRPKLCD-------------------------------------------L--------- 392 (490)
Q Consensus 366 iwd~~~~~~~~~~~-~~~~~~~~~~~~-------------------------------------------~--------- 392 (490)
+||+.+ ++....+ .+|...+..+.. +
T Consensus 350 ~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~ 428 (611)
T 1nr0_A 350 SWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428 (611)
T ss_dssp EEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred EEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence 999986 5443322 111111000000 0
Q ss_pred --------ccC------CCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 393 --------YEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 393 --------~~~------~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
+.. .....+.+++|+|||++||+|+.|+.|++||+.+++.......+|...|++++||||++..+.
T Consensus 429 ~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 429 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp EESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred EeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE
Confidence 000 001236689999999999999999999999998775422223789999999999999998877
Q ss_pred CccCcc
Q 011257 459 GSLSGV 464 (490)
Q Consensus 459 ~~~~~~ 464 (490)
++.++.
T Consensus 509 ~s~d~~ 514 (611)
T 1nr0_A 509 TDQSRK 514 (611)
T ss_dssp EETTSC
T ss_pred EcCCCC
Confidence 665544
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2e-42 Score=323.02 Aligned_cols=308 Identities=16% Similarity=0.272 Sum_probs=219.1
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecC------CCcEEEEEecCCCCCCCcccccccccceeecC
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH 87 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 87 (490)
...|++... ....|.+.|++++|||||++||+|+. |+.|++|+..++..
T Consensus 28 ~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~------------------ 82 (357)
T 4g56_B 28 GSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP------------------ 82 (357)
T ss_dssp -------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---------------------
T ss_pred ccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc------------------
Confidence 455766531 23469999999999999999999997 67888888766542
Q ss_pred CccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCc
Q 011257 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 88 p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (490)
...+.....+|. ..|++++|+| ++ .+++++.||+|+|||+.+++.......... .+.+.+
T Consensus 83 -~~~~~~~~~~~~------------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~----~h~~~V 142 (357)
T 4g56_B 83 -NESLCTAGVQTE------------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNKFAKY----EHDDIV 142 (357)
T ss_dssp -CGGGCSEEEECS------------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCCEEEC----CCSSCE
T ss_pred -ceeEecccCCCC------------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEeeccC----CCCCCE
Confidence 112233345566 7899999997 33 577889999999999988764433222111 011222
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE- 246 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~- 246 (490)
.+++|+|+|+ +|++++.|+.|++||+ . ..++...+ .+|...|.+++|++++.
T Consensus 143 -------~~v~~spdg~------------~l~sgs~dg~v~iwd~-~------~~~~~~~~-~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 143 -------KTLSVFSDGT------------QAVSGGKDFSVKVWDL-S------QKAVLKSY-NAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp -------EEEEECSSSS------------EEEEEETTSCEEEEET-T------TTEEEEEE-CCCSSCEEEEEECTTCSS
T ss_pred -------EEEEECCCCC------------EEEEEeCCCeEEEEEC-C------CCcEEEEE-cCCCCCEEEEEEccCCCc
Confidence 3889999999 8999999999999992 2 23344444 78999999999999875
Q ss_pred EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 247 ~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
+++++ .|+.|++||+++....... .+..+...+.+++|+|++..+|++|+.|+.|++||+++++. +..+
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~ 265 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTS 265 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEE
T ss_pred eeeeeccCCceEEEECCCCceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEE
Confidence 67777 8999999999865443221 34567788999999998758999999999999999998764 3555
Q ss_pred ccccCCCccccccccccceEEEEECCCC-CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceee
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g-~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
..+. ..|++++|+|++ ++|++|+ |++|+|||+++ ++.+..+ +|... |++
T Consensus 266 ~~~~------------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~~~~~~-~H~~~---------------V~~ 316 (357)
T 4g56_B 266 AVHS------------QNITGLAYSYHSSPFLASISEDCTVAVLDADF-SEVFRDL-SHRDF---------------VTG 316 (357)
T ss_dssp CCCS------------SCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CEEEEEC-CCSSC---------------EEE
T ss_pred eccc------------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-CcEeEEC-CCCCC---------------EEE
Confidence 5544 789999999987 5788875 69999999986 6655544 56654 569
Q ss_pred EEEcC-CCCEEEEeecCCeEEEEecCCCce
Q 011257 404 CCLSG-DGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 404 ~~~s~-d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
++|+| |+++|++++.||.|++|++.+...
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 99998 899999999999999999986543
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-41 Score=310.05 Aligned_cols=298 Identities=14% Similarity=0.189 Sum_probs=234.4
Q ss_pred cccccccEEEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg-~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...|.+.|++++|+|++ ++|++|+.|++|++|++...... ....+..+.+|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS---------
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc---------
Confidence 45799999999999965 89999999999999998754311 112345678888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|++++|+| ++.+|++++.|++|++||+.+++....+..+. +.+ .+++|+|++.
T Consensus 66 ---~~v~~~~~s~--dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~--------~~v-------~~~~~~~~~~----- 120 (319)
T 3frx_A 66 ---HIVQDCTLTA--DGAYALSASWDKTLRLWDVATGETYQRFVGHK--------SDV-------MSVDIDKKAS----- 120 (319)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCE-------EEEEECTTSC-----
T ss_pred ---ccEEEEEECC--CCCEEEEEeCCCEEEEEECCCCCeeEEEccCC--------CcE-------EEEEEcCCCC-----
Confidence 8899999996 67799999999999999999998766554332 122 2788999998
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC------CCEEEEe-cCCcEEEEEcC
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNLE 262 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~-~d~~i~~wd~~ 262 (490)
++++++.|++|++|| .. ..+...+ .+|...|.+++|.|. +..++++ .|+.|++||++
T Consensus 121 -------~l~s~s~D~~i~vwd-~~-------~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 121 -------MIISGSRDKTIKVWT-IK-------GQCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp -------EEEEEETTSCEEEEE-TT-------SCEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred -------EEEEEeCCCeEEEEE-CC-------CCeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 899999999999999 22 1233343 689999999999985 4478888 89999999998
Q ss_pred CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
... ... .+.+|...|.+++|+|++ .+|++|+.||+|++||+++++. +..+..+ .
T Consensus 185 ~~~-~~~-------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~-------------~ 238 (319)
T 3frx_A 185 QFQ-IEA-------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKA----MYTLSAQ-------------D 238 (319)
T ss_dssp TTE-EEE-------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECC-------------S
T ss_pred cch-hhe-------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecCC-------------C
Confidence 443 322 357899999999999999 9999999999999999998764 2444433 5
Q ss_pred ceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
.|.+++|+|++.+|+++.++.+++|+++. ...+..+..+..... ...-..+.+++|+|||++|++|+.||.|
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCceE
Confidence 79999999999999999888899999985 555555543321100 0001125699999999999999999999
Q ss_pred EEEecCCC
Q 011257 423 RVFGCSEG 430 (490)
Q Consensus 423 ~vw~~~~~ 430 (490)
+|||+.++
T Consensus 311 ~vWd~~t~ 318 (319)
T 3frx_A 311 RVWQVMTA 318 (319)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeec
Confidence 99999865
No 10
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-41 Score=336.21 Aligned_cols=311 Identities=18% Similarity=0.315 Sum_probs=256.4
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|...|++++|+|++++|++++.|+.|++|+.... ....+.+|.
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~h~---------- 303 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS---------- 303 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------------EEEEEecCC----------
Confidence 3468999999999999999999999999999996432 245677888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++|+| ++..+++++.|++|++||+............ ..+ .+++|+|+|+
T Consensus 304 --~~v~~~~~~~--~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~---------~~v-------~~~~~s~~g~------ 357 (577)
T 2ymu_A 304 --SSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQHLQTLTGHS---------SSV-------WGVAFSPDGQ------ 357 (577)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSCEEEEETTSCEEEEECCCS---------SCE-------EEEEECTTSS------
T ss_pred --CCeEEEEECC--CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCC---------CCE-------EEEEECCCCC------
Confidence 8899999996 6779999999999999999877654432211 112 2789999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
++++++.++.+++|+ .. .+....+ .+|...|.+++|+|++++|+++ .|+.|++||.. . +...
T Consensus 358 ------~l~~~~~dg~v~~~~-~~-------~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~-~~~~ 420 (577)
T 2ymu_A 358 ------TIASASDDKTVKLWN-RN-------GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQ 420 (577)
T ss_dssp ------EEEEEETTSEEEEEE-TT-------CCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C-CEEE
T ss_pred ------EEEEEeCCCEEEEEc-CC-------CCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEE
Confidence 899999999999998 21 1233333 6889999999999999999999 89999999964 3 3333
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+.+|...|++++|+|++ ++|++++.|+.|++||.... . +..+..| ...|++++|
T Consensus 421 -------~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~-~----~~~~~~~------------~~~v~~~~~ 475 (577)
T 2ymu_A 421 -------TLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQ-L----LQTLTGH------------SSSVRGVAF 475 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSC-E----EEEEECC------------SSCEEEEEE
T ss_pred -------EecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCCC-E----EEEEcCC------------CCCEEEEEE
Confidence 356799999999999999 99999999999999997542 2 3444444 478999999
Q ss_pred CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
+|++++|++++ |+.|++||.. ++++..+.+|... |++++|+||+++||+++.||.|++||.
T Consensus 476 spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~s~~~dg~v~lwd~- 537 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNR- 537 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred cCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCCCC---------------EEEEEEcCCCCEEEEEECcCEEEEEeC-
Confidence 99999999974 6999999964 7888999988765 569999999999999999999999996
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
+++. +..+.+|.++|++++|+||+.....++.+
T Consensus 538 ~~~~-~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 538 NGQL-LQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp TSCE-EEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 4655 68899999999999999999877655444
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=313.80 Aligned_cols=302 Identities=13% Similarity=0.206 Sum_probs=219.3
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|...|.+++|+|||++|++++ |+++++||......... ...|...... ....+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~------------~~~~~~~~~~------------~~~~~ 81 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDP------------CAAPNEGFCS------------AGVQT 81 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSG------------GGTTCGGGCS------------EEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccc------------cccCCcceee------------eeecc
Confidence 35678899999999999999887 77888887532110000 0000000111 11223
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+..|++++|+| + ..|++|+.||+|+|||+.+++........... +.+.+. +++|+|+|+
T Consensus 82 ~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~----H~~~V~-------~v~~spdg~------- 140 (344)
T 4gqb_B 82 EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSKFCKYE----HDDIVS-------TVSVLSSGT------- 140 (344)
T ss_dssp SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEEC----CSSCEE-------EEEECTTSS-------
T ss_pred CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEeeccccC----CCCCEE-------EEEECCCCC-------
Confidence 37799999996 3 47999999999999999987644333221100 112233 889999999
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+|++++.|++|++||+ . ..++...+ .+|...|.+++|++++. +|+++ .|+.|++||+++......
T Consensus 141 -----~l~sgs~d~~i~iwd~-~------~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 207 (344)
T 4gqb_B 141 -----QAVSGSKDICIKVWDL-A------QQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ 207 (344)
T ss_dssp -----EEEEEETTSCEEEEET-T------TTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE
T ss_pred -----EEEEEeCCCeEEEEEC-C------CCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeee
Confidence 8999999999999992 2 23444554 79999999999999975 67888 899999999986554433
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
+ ....+...+.+++|+|++..+|++|+.||+|++||+++++. +..+.+|. ..|++++|
T Consensus 208 ~------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h~------------~~v~~v~f 265 (344)
T 4gqb_B 208 I------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVHS------------QCVTGLVF 265 (344)
T ss_dssp C------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECCS------------SCEEEEEE
T ss_pred e------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCCC------------CCEEEEEE
Confidence 2 23456677999999997658999999999999999998764 35555554 78999999
Q ss_pred CCCC-CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-EEEEeecCCeEEEEe
Q 011257 350 ARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFG 426 (490)
Q Consensus 350 sp~g-~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~vw~ 426 (490)
+|++ ++|++|+ |++|+|||+.+ ++ +..+.+|... |++++|+|+++ +|++++.||+|++|+
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~-~~-~~~~~~H~~~---------------V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSL-SE-LFRSQAHRDF---------------VRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTC-CE-EEEECCCSSC---------------EEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ccCCCeEEEEEeCCCeEEEEECCC-Cc-EEEEcCCCCC---------------EEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 9998 5788874 69999999985 44 4566777765 56999999986 677999999999999
Q ss_pred cCCCc
Q 011257 427 CSEGS 431 (490)
Q Consensus 427 ~~~~~ 431 (490)
+.+..
T Consensus 329 v~~~~ 333 (344)
T 4gqb_B 329 VPTEP 333 (344)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 98653
No 12
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=314.44 Aligned_cols=314 Identities=14% Similarity=0.136 Sum_probs=228.1
Q ss_pred ccccc-cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 32 VQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 32 ~~h~~-~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..|.+ .|.+++|+|+|++||+|+.|++|+|||+.++... .......+|.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~---------- 61 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ---------- 61 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS----------
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC----------
Confidence 35777 9999999999999999999999999999865411 0011235787
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+| ++.+|++++.|++|++|++..+.......+..+ .+.+. +++|+|+|+
T Consensus 62 --~~v~~~~~sp--~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h------~~~v~-------~v~~sp~~~------ 118 (345)
T 3fm0_A 62 --RTVRKVAWSP--CGNYLASASFDATTCIWKKNQDDFECVTTLEGH------ENEVK-------SVAWAPSGN------ 118 (345)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSCEEEEEECCC-EEEEEEECCC------SSCEE-------EEEECTTSS------
T ss_pred --CcEEEEEECC--CCCEEEEEECCCcEEEEEccCCCeEEEEEccCC------CCCce-------EEEEeCCCC------
Confidence 8899999997 677999999999999999988765444443322 12222 889999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
+|++++.|++|++||+... ....+...+ .+|...|.+++|+|++++|+++ .|+.|++||.+......
T Consensus 119 ------~l~s~s~D~~v~iwd~~~~----~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~- 186 (345)
T 3fm0_A 119 ------LLATCSRDKSVWVWEVDEE----DEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC- 186 (345)
T ss_dssp ------EEEEEETTSCEEEEEECTT----SCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE-
T ss_pred ------EEEEEECCCeEEEEECCCC----CCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE-
Confidence 8999999999999993221 112233333 7899999999999999999999 89999999998443221
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccc-ccccceEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIK 348 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~l~ 348 (490)
. ..+.+|...|++++|+|++ ++|++|+.|++|++||......... +..............+. .|...|.+++
T Consensus 187 ~-----~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 187 C-----ATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQG-VACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp E-----EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTC-CCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred E-----EEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCcc-ceeeccCCccceeEEecCCCCCcEEEEE
Confidence 1 1467899999999999999 9999999999999999754321100 00000000000001112 2668899999
Q ss_pred ECCCCCEEEEE-cCCeEEEEeccCCC---Cceeee-----eeeccccccccccccCCCccceeeEEEcCCC-CEEEEeec
Q 011257 349 FARNGRHILSR-DYMTLKLWDINMDS---GPVATF-----QVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSY 418 (490)
Q Consensus 349 ~sp~g~~l~sg-~d~~i~iwd~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~ 418 (490)
|+|++..|+++ .|+.|++|+..... .+...+ .+|... |.+++|+|++ .+||+|+.
T Consensus 260 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~---------------V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD---------------VNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC---------------EEEEEECSSSTTEEEEEET
T ss_pred EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc---------------EeEeEEeCCCceEEEEcCC
Confidence 99999999987 56999999987521 122222 223322 6799999998 59999999
Q ss_pred CCeEEEEecCCCce
Q 011257 419 SNLFRVFGCSEGSA 432 (490)
Q Consensus 419 dg~i~vw~~~~~~~ 432 (490)
||.|++|++.+++.
T Consensus 325 Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 325 DGEVAFWKYQRPEG 338 (345)
T ss_dssp TSCEEEEEECC---
T ss_pred CCcEEEEEecCCCC
Confidence 99999999998765
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-41 Score=319.74 Aligned_cols=310 Identities=17% Similarity=0.275 Sum_probs=231.7
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|.+.|++++|+|++++||+|+.||+|+|||..+++ ....+.+|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----------------------~~~~~~~h~---------- 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----------------------KTHAIKLHC---------- 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------EEEEEECCC----------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------cceEEecCC----------
Confidence 45799999999999999999999999999999987765 245677887
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++|+| ++.+|++++.|+.+++|++.+...... ..........+.+. ...+.|+|++..
T Consensus 109 --~~v~~~~~s~--~g~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~-------v~~~~~~~~~~~----- 171 (380)
T 3iz6_a 109 --PWVMECAFAP--NGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGY-------ASSCQYVPDQET----- 171 (380)
T ss_dssp --TTCCCCEECT--TSSEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSC-------CCCCBCCSSSSS-----
T ss_pred --CCEEEEEECC--CCCEEEEeeCCCcEEEEECCCCccccC-CccceeeccCCCcc-------eEEEEEecCCCC-----
Confidence 7799999997 677999999999999999975421000 00000000001111 125667776543
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
.+++++.|++|++||+...... ......+..+|...|.+++|++ ++++|++| .|+.|++||++......
T Consensus 172 ------~l~s~s~D~~i~~wd~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~ 242 (380)
T 3iz6_a 172 ------RLITGSGDQTCVLWDVTTGQRI---SIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV 242 (380)
T ss_dssp ------CEEEECTTSCEEEECTTTCCEE---EEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCC
T ss_pred ------EEEEECCCCcEEEEEcCCCcEE---EEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcce
Confidence 6899999999999993221111 0000111257889999999987 78999999 89999999998554444
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
. .+.+|...|.+++|+|++ .+|++|+.||+|++||+++++.. ..+..+... ...+...|++++
T Consensus 243 ~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~----~~~~~~~~~-----~~~~~~~v~~~~ 305 (380)
T 3iz6_a 243 R-------TYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQL----QVYNREPDR-----NDNELPIVTSVA 305 (380)
T ss_dssp E-------EECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEE----EEECCCCSS-----SCCSSCSCSEEE
T ss_pred E-------EECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEE----EEecccccc-----cccccCceEEEE
Confidence 3 357899999999999999 99999999999999999987642 333332210 111224589999
Q ss_pred ECCCCCEEEEEc-CCeEEEEeccCCCCceeee----eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 349 ~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
|+|+|++|++|+ ||.|++||+.. ++.+..+ .+|... |.+++|+|||++|++|+.||.|+
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGR---------------ISCLGLSSDGSALCTGSWDKNLK 369 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCC---------------CCEEEECSSSSEEEEECTTSCEE
T ss_pred ECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCc---------------eEEEEECCCCCEEEEeeCCCCEE
Confidence 999999999985 69999999986 7766666 345544 56999999999999999999999
Q ss_pred EEecCCCce
Q 011257 424 VFGCSEGSA 432 (490)
Q Consensus 424 vw~~~~~~~ 432 (490)
+|++...+.
T Consensus 370 iW~~~~~~~ 378 (380)
T 3iz6_a 370 IWAFSGHRK 378 (380)
T ss_dssp EEECCSSSS
T ss_pred EEecCCCcc
Confidence 999986643
No 14
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.7e-40 Score=308.78 Aligned_cols=306 Identities=14% Similarity=0.198 Sum_probs=228.1
Q ss_pred cccccccEEEEEE-----CC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccc
Q 011257 31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (490)
Q Consensus 31 ~~~h~~~V~~~~~-----s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 104 (490)
..+|.+.|++++| ++ ++++||+|+.|++|++||+...+.... .......+.+|.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~----------------~~~~~~~l~~h~---- 76 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY----------------FGIPHKALTGHN---- 76 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----------------SEEEEEEECCCS----
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----------------cccccchhccCC----
Confidence 4479999999999 77 999999999999999999976542100 011245577888
Q ss_pred eeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 105 ~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
..|++++|+| ++.++++++.|++|++||+.+++....+..+. +.+. +++|+|+++
T Consensus 77 --------~~V~~~~~~~--~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--------~~v~-------~v~~sp~~~ 131 (343)
T 2xzm_R 77 --------HFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--------SEVY-------SVAFSPDNR 131 (343)
T ss_dssp --------SCEEEEEECS--STTEEEEEETTSEEEEEETTSSCEEEEEECCC--------SCEE-------EEEECSSTT
T ss_pred --------CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--------CcEE-------EEEECCCCC
Confidence 8899999997 56799999999999999999987665544332 1222 789999999
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC----------CEEEEe-cC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----------ETFISA-DD 253 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----------~~l~~~-~d 253 (490)
++++++.|++|++||+ ..... .......+|...|.+++|+|++ .+|+++ .|
T Consensus 132 ------------~l~s~~~d~~i~~wd~-~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 132 ------------QILSAGAEREIKLWNI-LGECK-----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp ------------EEEEEETTSCEEEEES-SSCEE-----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred ------------EEEEEcCCCEEEEEec-cCCce-----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence 8999999999999993 21100 0001124788899999999987 688988 89
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
+.|++||.. ..... .+.+|...|.+++|+|++ ++|++|+.||.|++||+...... ...+..
T Consensus 194 ~~i~iwd~~--~~~~~-------~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~------ 254 (343)
T 2xzm_R 194 GRLKVWNTN--FQIRY-------TFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREFDA------ 254 (343)
T ss_dssp SEEEEEETT--TEEEE-------EEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEEEC------
T ss_pred CEEEEEcCC--CceeE-------EEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceeecC------
Confidence 999999954 22222 356799999999999999 99999999999999999543321 122221
Q ss_pred cccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCcee--eeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 334 ~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
...|.+++|+|++++++++.|+.|++||+.+ ++... .+..+... .... .......|.+++|+|+|+
T Consensus 255 -------~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~--~~~~--~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 255 -------GSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPIT--KAEG--QKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp -------SSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSGG--GBTT--BCCSCCCEEEEEECSSSC
T ss_pred -------CCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcch--hhhh--hcCCCCceEEEEECCCCC
Confidence 1469999999999999988898999999986 44433 33211100 0000 001112367999999999
Q ss_pred EEEEeecCCeEEEEecCCC
Q 011257 412 RVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~ 430 (490)
+|++|+.||.|++|+++++
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEETTSEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEcc
Confidence 9999999999999999865
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-40 Score=308.47 Aligned_cols=286 Identities=17% Similarity=0.285 Sum_probs=229.2
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...+|.+.|++++|+|++++||+|+.||+|++||..+++. ...+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC---------
Confidence 3457999999999999999999999999999999876552 34455566
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE------EEEeeeccCCCcCCCCCCccccccccCceEEeccC
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV------KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 183 (490)
..|.+++|+| ++.++++++.|+.+++|++..... ......+ .+.+ ..++|+|++
T Consensus 107 ---~~v~~~~~sp--~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h--------~~~v-------~~~~~~~~~ 166 (354)
T 2pbi_B 107 ---TWVMACAYAP--SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--------TNYL-------SACSFTNSD 166 (354)
T ss_dssp ---SCCCEEEECT--TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC--------SSCE-------EEEEECSSS
T ss_pred ---CCEEEEEECC--CCCEEEEeeCCCCEEEEEEeccccccccccceeeecc--------CCcE-------EEEEEeCCC
Confidence 6799999997 677999999999999999864310 1111111 1122 278899998
Q ss_pred CccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEEEEe-cCCcEEEEE
Q 011257 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWN 260 (490)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~~wd 260 (490)
. .+++++.|++|++||+ . ..++...+ .+|...|.+++|+| ++++|++| .|+.|++||
T Consensus 167 ~------------~l~t~s~D~~v~lwd~-~------~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 167 M------------QILTASGDGTCALWDV-E------SGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp S------------EEEEEETTSEEEEEET-T------TCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEE
T ss_pred C------------EEEEEeCCCcEEEEeC-C------CCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 8 7999999999999992 2 22344444 78999999999987 57899999 899999999
Q ss_pred cCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccc
Q 011257 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (490)
+++.. ... .+.+|...|.+++|+|++ .+|++|+.|++|++||++.++.. ..+..+. +
T Consensus 227 ~~~~~-~~~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~~----------~ 283 (354)
T 2pbi_B 227 MRSGQ-CVQ-------AFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREV----AIYSKES----------I 283 (354)
T ss_dssp TTTCC-EEE-------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECCTT----------C
T ss_pred CCCCc-EEE-------EecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEcCCC----------c
Confidence 98544 333 357899999999999999 99999999999999999986532 2332221 1
Q ss_pred ccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 341 IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 341 ~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
...+.+++|+|+|++|++|+ |+.|++||+.+ +..+..+.+|... |++++|+|||++|++|+.|
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~-~~~~~~l~~h~~~---------------v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLK-GSRVSILFGHENR---------------VSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEECTTSSCEEEEETT
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCC-CceEEEEECCCCc---------------EEEEEECCCCCEEEEEcCC
Confidence 24689999999999999985 69999999987 8888888888766 5699999999999999999
Q ss_pred CeEEEEe
Q 011257 420 NLFRVFG 426 (490)
Q Consensus 420 g~i~vw~ 426 (490)
|.|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999996
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-39 Score=302.32 Aligned_cols=302 Identities=14% Similarity=0.196 Sum_probs=231.5
Q ss_pred cccccccEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
..+|.+.|++|+|+|+ +++||||+.|++|+|||+.+.+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence 4579999999999997 689999999999999999876532 112345678888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.+++|+| ++.+|++++.|+.|++|+............... ......+++++.
T Consensus 87 ---~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~----- 141 (340)
T 4aow_A 87 ---HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK---------------DVLSVAFSSDNR----- 141 (340)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS---------------CEEEEEECTTSS-----
T ss_pred ---CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecCCCC---------------ceeEEEEeecCc-----
Confidence 8899999996 678999999999999999998876655443321 111456677777
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC--CEEEEe-cCCcEEEEEcCCCCc
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
++++++.|+.+++||+ ... ........+|...+..++|++++ .+++++ .|+.|++||++...
T Consensus 142 -------~l~s~s~d~~~~~~d~-~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~- 206 (340)
T 4aow_A 142 -------QIVSGSRDKTIKLWNT-LGV------CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK- 206 (340)
T ss_dssp -------CEEEEETTSCEEEECT-TSC------EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-
T ss_pred -------cceeecCCCeEEEEEe-CCC------ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-
Confidence 8999999999999992 211 11122236888999999998864 567777 89999999998543
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
... .+.+|...|++++|+|++ ++|++|+.||.|++||+++.+. +..+..+ ..+.+
T Consensus 207 ~~~-------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~-------------~~v~~ 261 (340)
T 4aow_A 207 LKT-------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH----LYTLDGG-------------DIINA 261 (340)
T ss_dssp EEE-------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEE----EEEEECS-------------SCEEE
T ss_pred eee-------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCce----eeeecCC-------------ceEEe
Confidence 333 357899999999999999 9999999999999999998754 3444433 57999
Q ss_pred EEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 347 l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
++|+|++.+++++.|+.|++||++. +..+..+..+..... .......|++++|+||+++|++|+.||.|+|||
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999988888899999999986 665555543321110 001112367999999999999999999999999
Q ss_pred cCCCc
Q 011257 427 CSEGS 431 (490)
Q Consensus 427 ~~~~~ 431 (490)
+++|+
T Consensus 335 ~~tGt 339 (340)
T 4aow_A 335 VTIGT 339 (340)
T ss_dssp EEC--
T ss_pred CCCcC
Confidence 99985
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=302.68 Aligned_cols=284 Identities=13% Similarity=0.200 Sum_probs=230.7
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeec--CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~--~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
...+++|. +.|.+++|+|. .++.+|++|+.|++|++|++..++.........+. ..+.
T Consensus 25 ~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~------~~v~-- 84 (321)
T 3ow8_A 25 FKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ------LGVV-- 84 (321)
T ss_dssp EEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS------SCEE--
T ss_pred eeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC------CCEE--
Confidence 34567788 89999999974 24679999999999999999887655443333321 1222
Q ss_pred ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 171 ~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
+++|++++. ++++++.|++|++||+ . ..++...+ ..|...+.+++|+|++++|++
T Consensus 85 -----~~~~~~~~~------------~l~s~s~D~~i~lWd~-~------~~~~~~~~-~~~~~~~~~~~~spdg~~l~~ 139 (321)
T 3ow8_A 85 -----SVDISHTLP------------IAASSSLDAHIRLWDL-E------NGKQIKSI-DAGPVDAWTLAFSPDSQYLAT 139 (321)
T ss_dssp -----EEEECSSSS------------EEEEEETTSEEEEEET-T------TTEEEEEE-ECCTTCCCCEEECTTSSEEEE
T ss_pred -----EEEECCCCC------------EEEEEeCCCcEEEEEC-C------CCCEEEEE-eCCCccEEEEEECCCCCEEEE
Confidence 788899988 8999999999999992 2 12233333 567788899999999999999
Q ss_pred e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 251 ~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
+ .|+.|++|+++....... +..|...+.+++|+|++ ++|++|+.||.|++||+++++. +..+..|.
T Consensus 140 g~~dg~v~i~~~~~~~~~~~--------~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~----~~~~~~h~ 206 (321)
T 3ow8_A 140 GTHVGKVNIFGVESGKKEYS--------LDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKL----LHTLEGHA 206 (321)
T ss_dssp ECTTSEEEEEETTTCSEEEE--------EECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE----EEEECCCS
T ss_pred EcCCCcEEEEEcCCCceeEE--------ecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEcccC
Confidence 9 899999999986654432 45678889999999999 9999999999999999998764 34555543
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
.+|.+++|+|++++|++|+ |+.|++||++. +..+..+.+|... |.+++|+|
T Consensus 207 ------------~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp 258 (321)
T 3ow8_A 207 ------------MPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCP 258 (321)
T ss_dssp ------------SCCCEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECT
T ss_pred ------------CceeEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECC
Confidence 7899999999999999985 59999999997 8888888888765 56999999
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
++++|++++.||.|++||+.++++ +..+.+|...|.+++|+|++...+.++.++
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEE-EEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999987 688999999999999999998766555443
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.9e-40 Score=310.01 Aligned_cols=315 Identities=14% Similarity=0.244 Sum_probs=228.0
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccc------ce
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF------DY 105 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~------~~ 105 (490)
..|.+.|+|++|+|||++||+|+ ++.+++|++.+++.. ..+..|.... ..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 679999999877632 1122211000 00
Q ss_pred eeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 106 ~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
.........|++++|+| ++.+|++++.|++|++||+.+++.......+. +.+. +++|+|+++
T Consensus 117 ~~~~~~~~~v~~v~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--------~~v~-------~~~~~p~~~- 178 (393)
T 1erj_A 117 SSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHE--------QDIY-------SLDYFPSGD- 178 (393)
T ss_dssp ----CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCS--------SCEE-------EEEECTTSS-
T ss_pred cccCCCceeEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEccCC--------CCEE-------EEEEcCCCC-
Confidence 00001114599999996 67799999999999999999988766544332 1222 789999998
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEI 263 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~ 263 (490)
+|++++.|++|++||+ .. .++...+ .+...+.+++|+| ++++|++| .|+.|++||+++
T Consensus 179 -----------~l~s~s~d~~v~iwd~-~~------~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 179 -----------KLVSGSGDRTVRIWDL-RT------GQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp -----------EEEEEETTSEEEEEET-TT------TEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred -----------EEEEecCCCcEEEEEC-CC------CeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 8999999999999992 21 2222222 3557799999999 89999999 899999999985
Q ss_pred CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccc
Q 011257 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
.. ....+........+|...|.+++|+|++ .+|++|+.|++|++||+++.... ..............+.+|...
T Consensus 239 ~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~----~~~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 239 GF-LVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNK----SDSKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp CC-EEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSC
T ss_pred Cc-EEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCc----ccccCCCCCcceEEEecccCc
Confidence 44 3333222222336799999999999999 99999999999999999875421 111100111112235567789
Q ss_pred eEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC------CCCEEEEe
Q 011257 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATG 416 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~ 416 (490)
|.+++|+|++++|++|+ |+.|++||+.+ ++++..+.+|... |.+++|++ ++++|++|
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~~l~~h~~~---------------v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNS---------------VISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECSSCTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEECCCCCC---------------EEEEEecCCcCcCCCCCEEEEE
Confidence 99999999999999975 69999999997 8899999998876 45888875 68899999
Q ss_pred ecCCeEEEEecCCC
Q 011257 417 SYSNLFRVFGCSEG 430 (490)
Q Consensus 417 ~~dg~i~vw~~~~~ 430 (490)
+.||.|+||++...
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998743
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.1e-40 Score=311.89 Aligned_cols=281 Identities=17% Similarity=0.268 Sum_probs=234.9
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
...+.+|. ++|++++|+| ++.+|++|+.||+|++||+.+++.......+. +.+
T Consensus 101 ~~~l~gh~------------~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~--------~~V----- 153 (410)
T 1vyh_C 101 KYALSGHR------------SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHT--------DSV----- 153 (410)
T ss_dssp SCEEECCS------------SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCS--------SCE-----
T ss_pred eEeecccC------------CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeccC--------CcE-----
Confidence 44567787 8899999997 56799999999999999999987655544332 122
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (490)
.+++|+|+|+ ++++++.|++|++|| .. ...+.+.+ .+|...|.+++|+|++++|++|
T Consensus 154 --~~v~~~~~~~------------~l~sgs~D~~i~iwd-~~------~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 154 --QDISFDHSGK------------LLASCSADMTIKLWD-FQ------GFECIRTM-HGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp --EEEEECTTSS------------EEEEEETTSCCCEEE-TT------SSCEEECC-CCCSSCEEEEEECSSSSEEEEEE
T ss_pred --EEEEEcCCCC------------EEEEEeCCCeEEEEe-CC------CCceeEEE-cCCCCCEEEEEEeCCCCEEEEEe
Confidence 2789999998 899999999999999 22 22344444 7899999999999999999999
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.|+.|++||+++.. ... .+.+|...|.++.++|++ .+|++|+.|++|++||+++++. ...+..|
T Consensus 212 ~D~~i~~wd~~~~~-~~~-------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~----~~~~~~h--- 275 (410)
T 1vyh_C 212 RDKTIKMWEVQTGY-CVK-------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKEC----KAELREH--- 275 (410)
T ss_dssp TTSEEEEEETTTCC-EEE-------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCE----EEEECCC---
T ss_pred CCCeEEEEECCCCc-EEE-------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCce----eeEecCC---
Confidence 89999999998554 333 356899999999999999 9999999999999999988753 2344444
Q ss_pred CccccccccccceEEEEECCC--------------------CCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccc
Q 011257 332 GTRSFFTEIIASISDIKFARN--------------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~--------------------g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
...|.+++|+|+ |.+|++|+ |+.|++||+++ +.++..+.+|...
T Consensus 276 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~----- 340 (410)
T 1vyh_C 276 ---------RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW----- 340 (410)
T ss_dssp ---------SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC-----
T ss_pred ---------CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc-----
Confidence 478999999996 67899875 69999999997 8889999888776
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
|.+++|+|++++|++|+.||.|++||+.++++ +..+.+|...|++++|+|+++..+.++.++.
T Consensus 341 ----------v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 341 ----------VRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp ----------EEEEEECSSSSCEEEEETTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred ----------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 56999999999999999999999999999887 6889999999999999999998776665543
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.3e-39 Score=322.22 Aligned_cols=313 Identities=18% Similarity=0.305 Sum_probs=255.3
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|...|.+++|+|++++|++++.|+.|++||.... .+..+.+|.
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~~~---------- 262 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS---------- 262 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------------EEEEEecCC----------
Confidence 3468999999999999999999999999999996432 245677888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+| ++..+++++.|+.|++|+......... ..+ .+.+ ..++|+|+++
T Consensus 263 --~~v~~v~~~~--d~~~l~~~~~d~~i~~w~~~~~~~~~~-~~h--------~~~v-------~~~~~~~~~~------ 316 (577)
T 2ymu_A 263 --SSVNGVAFRP--DGQTIASASDDKTVKLWNRNGQLLQTL-TGH--------SSSV-------WGVAFSPDGQ------ 316 (577)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSCEEEEETTSCEEEEE-CCC--------SSCE-------EEEEECTTSS------
T ss_pred --CCEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCcEEEEE-ecC--------CCCe-------EEEEECCCCC------
Confidence 8899999996 677999999999999999765543332 211 1122 2789999998
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
++++++.|+.+++|+ ... .....+ .+|...+.+++|+|++++|+++ .|+.|++||.. . +...
T Consensus 317 ------~l~t~~~d~~i~~w~-~~~-------~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~ 379 (577)
T 2ymu_A 317 ------TIASASDDKTVKLWN-RNG-------QHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQ 379 (577)
T ss_dssp ------EEEEEETTSCEEEEE-TTS-------CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEE
T ss_pred ------EEEEEeCCCeEEEEe-CCC-------CeeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEE
Confidence 899999999999999 221 122233 6888999999999999999999 89999999965 3 3333
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+.+|...|.+++|+|++ ++|++++.|+.|++||... +. +..+..| ...|++++|
T Consensus 380 -------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~----~~~~~~~------------~~~v~~~~~ 434 (577)
T 2ymu_A 380 -------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QL----LQTLTGH------------SSSVWGVAF 434 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-CE----EEEEECC------------SSCEEEEEE
T ss_pred -------EecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CE----EEEecCC------------CCCeEEEEE
Confidence 356789999999999999 9999999999999999643 22 3444444 478999999
Q ss_pred CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
+||+++|++++ |+.|++||+. ++.+..+.+|... |.+++|+||+++|++++.|+.|++||.
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~- 496 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNR- 496 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEET-
T ss_pred CCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcC-
Confidence 99999999974 6999999975 6788888888765 569999999999999999999999996
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
+++. +..+.+|...|++++|+||++..+.++.++.
T Consensus 497 ~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 531 (577)
T 2ymu_A 497 NGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531 (577)
T ss_dssp TSCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred CCCE-EEEEeCCCCCEEEEEEcCCCCEEEEEECcCE
Confidence 4555 6889999999999999999998877666554
No 21
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-38 Score=291.67 Aligned_cols=289 Identities=16% Similarity=0.289 Sum_probs=232.2
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|.+.|++++|+|++++||+|+.||.|++|+..+++ ....+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence 35799999999999999999999999999999987665 345677888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++|+| ++++|++++.|+.|++||+.+++.......+. ..+ .+++|+|+++
T Consensus 66 --~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v-------~~~~~~~~~~------ 120 (312)
T 4ery_A 66 --LGISDVAWSS--DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------NYV-------FCCNFNPQSN------ 120 (312)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECCS--------SCE-------EEEEECSSSS------
T ss_pred --CceEEEEEcC--CCCEEEEECCCCEEEEEECCCCcEEEEEcCCC--------CCE-------EEEEEcCCCC------
Confidence 8899999997 66799999999999999999987666544332 122 2788999998
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
++++++.|+.|++||+ . ..++...+ ..|...|.+++|+|++++|+++ .|+.|++||+++......
T Consensus 121 ------~l~s~~~d~~i~iwd~-~------~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 186 (312)
T 4ery_A 121 ------LIVSGSFDESVRIWDV-K------TGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186 (312)
T ss_dssp ------EEEEEETTSCEEEEET-T------TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ------EEEEEeCCCcEEEEEC-C------CCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE
Confidence 8999999999999992 2 12233343 6788999999999999999999 899999999985543332
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
. ...+...+..++|+|++ .+|++++.|+.|++||+++++. +..+..+.... ..+.....
T Consensus 187 ~-------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~---------~~~~~~~~ 245 (312)
T 4ery_A 187 L-------IDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKC----LKTYTGHKNEK---------YCIFANFS 245 (312)
T ss_dssp E-------CCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEE----EEEECSSCCSS---------SCCCEEEE
T ss_pred E-------eccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcE----EEEEEecCCce---------EEEEEEEE
Confidence 2 24567789999999999 9999999999999999998764 34555543210 11233334
Q ss_pred CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee--cCCeEEEEe
Q 011257 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFG 426 (490)
Q Consensus 350 sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~vw~ 426 (490)
.+++++|++|+ |+.|++||+.+ ++.+..+.+|... |.+++|+|++++|++++ .|+.|++|+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDV---------------VISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred eCCCcEEEEECCCCEEEEEECCC-chhhhhhhccCCc---------------EEEEeecCcCCceEEEEccCCccEEEec
Confidence 46889999975 69999999997 8888999988766 56999999999999987 699999999
Q ss_pred cC
Q 011257 427 CS 428 (490)
Q Consensus 427 ~~ 428 (490)
.+
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.7e-39 Score=297.12 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=228.3
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
....+.+|. +.|++++|+| ++.+|++++.||+|++||+.+++.......+. ..+
T Consensus 47 ~~~~l~gH~------------~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--------~~v---- 100 (340)
T 1got_B 47 TRRTLRGHL------------AKIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--------SWV---- 100 (340)
T ss_dssp EEEEECCCS------------SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECSS--------SCE----
T ss_pred hheeecCCC------------CceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcceEeecCC--------ccE----
Confidence 345678888 8899999996 67799999999999999999887665544332 122
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
.+++|+|+|+ ++++++.|+.+++|++ ...+. ....... +.+|...|.++.|++++. ++++
T Consensus 101 ---~~~~~s~~~~------------~l~s~~~d~~v~iw~~-~~~~~--~~~~~~~-~~~h~~~v~~~~~~~~~~-l~s~ 160 (340)
T 1got_B 101 ---MTCAYAPSGN------------YVACGGLDNICSIYNL-KTREG--NVRVSRE-LAGHTGYLSCCRFLDDNQ-IVTS 160 (340)
T ss_dssp ---EEEEECTTSS------------EEEEEETTCEEEEEET-TTCSB--SCEEEEE-EECCSSCEEEEEEEETTE-EEEE
T ss_pred ---EEEEECCCCC------------EEEEEeCCCeEEEEEC-ccCCC--cceeEEE-ecCCCccEEEEEECCCCc-EEEE
Confidence 2789999998 8999999999999993 22111 1112222 378999999999999886 5666
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.|+.|++||+++.. ... .+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ...+..|
T Consensus 161 s~d~~i~~wd~~~~~-~~~-------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~----~~~~~~h-- 225 (340)
T 1got_B 161 SGDTTCALWDIETGQ-QTT-------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMC----RQTFTGH-- 225 (340)
T ss_dssp ETTSCEEEEETTTTE-EEE-------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSE----EEEECCC--
T ss_pred ECCCcEEEEECCCCc-EEE-------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCee----EEEEcCC--
Confidence 89999999998544 333 357899999999999999 9999999999999999998753 2445444
Q ss_pred CCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
...|.+++|+|++++|++|+ |++|++||++. ++.+..+..+.. ...|.+++|+|+
T Consensus 226 ----------~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~-------------~~~v~~~~~s~~ 281 (340)
T 1got_B 226 ----------ESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNI-------------ICGITSVSFSKS 281 (340)
T ss_dssp ----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTT
T ss_pred ----------cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCc-------------ccceEEEEECCC
Confidence 47899999999999999985 69999999986 665555542211 112669999999
Q ss_pred CCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
+++|++|+.||.|++||+.+++. +..+.+|..+|.+++|+|++...+.++.++
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCEEEEECCCCeEEEEEcccCcE-eeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 99999999999999999998877 688999999999999999998877665544
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.4e-39 Score=297.93 Aligned_cols=288 Identities=16% Similarity=0.243 Sum_probs=229.9
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
...+.+|. +.|++++|+| ++.+|++|+.||+|++||..+++.......+. ..
T Consensus 57 ~~~l~gH~------------~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--------~~------ 108 (354)
T 2pbi_B 57 RRTLKGHG------------NKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--------TW------ 108 (354)
T ss_dssp EEEEECCS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSS--------SC------
T ss_pred EEEecCCC------------CeEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcceEEecCC--------CC------
Confidence 45678888 8899999997 66799999999999999998887665544332 11
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (490)
..+++|+|+|. ++++++.|+.+++|++...... ........ ..+|...|.+++|+|++..|+++
T Consensus 109 -v~~~~~sp~g~------------~lasg~~d~~i~v~~~~~~~~~-~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s 173 (354)
T 2pbi_B 109 -VMACAYAPSGC------------AIACGGLDNKCSVYPLTFDKNE-NMAAKKKS-VAMHTNYLSACSFTNSDMQILTAS 173 (354)
T ss_dssp -CCEEEECTTSS------------EEEEESTTSEEEEEECCCCTTC-CSGGGCEE-EEECSSCEEEEEECSSSSEEEEEE
T ss_pred -EEEEEECCCCC------------EEEEeeCCCCEEEEEEeccccc-ccccccee-eeccCCcEEEEEEeCCCCEEEEEe
Confidence 23789999999 8999999999999994322111 11122222 36899999999999999999999
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
.|++|++||+++.. ... .+.+|...|.+++|+|+ + .+|++|+.||+|++||+++++. +..+..|
T Consensus 174 ~D~~v~lwd~~~~~-~~~-------~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~----~~~~~~h- 239 (354)
T 2pbi_B 174 GDGTCALWDVESGQ-LLQ-------SFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQC----VQAFETH- 239 (354)
T ss_dssp TTSEEEEEETTTCC-EEE-------EEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCE----EEEECCC-
T ss_pred CCCcEEEEeCCCCe-EEE-------EEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcE----EEEecCC-
Confidence 89999999998554 333 35789999999999884 5 7999999999999999998764 3455544
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
...|.+++|+|++.+|++|+ |++|++||++. .+.+..+..+.. ...+.+++|+|
T Consensus 240 -----------~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~ 294 (354)
T 2pbi_B 240 -----------ESDVNSVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSL 294 (354)
T ss_dssp -----------SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECT
T ss_pred -----------CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeC
Confidence 47899999999999999975 69999999986 555554443221 11256899999
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
++++|++|+.|+.|++||+.+++. +..+.+|..+|.+++|+||+...+.++.++
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEECCCcEEEEECCCCce-EEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999999999887 688999999999999999999877666544
No 24
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-39 Score=308.97 Aligned_cols=338 Identities=12% Similarity=0.166 Sum_probs=251.2
Q ss_pred cccccccEEEEEECCCCC-EEEEe----------cCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccC
Q 011257 31 EVQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~-~latg----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h 99 (490)
.+.+...|.+++|+|+++ +||+| +.|+.|+|||+.++... +.... ..|
T Consensus 8 ~l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~-~~~ 66 (416)
T 2pm9_A 8 KLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIAS-LQV 66 (416)
T ss_dssp --CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCC-CCC
T ss_pred hHhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEE-Eec
Confidence 345667899999999987 99999 88999999999876421 01111 235
Q ss_pred CcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccC----CeEEEEeeeccCCCcCCCCCCccccccccC
Q 011257 100 EPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (490)
Q Consensus 100 ~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
. ..|++++|+| ++.+|++++.||.|++||+.. .+.......+ .+. ..
T Consensus 67 ~------------~~v~~~~~s~--~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h--------~~~-------v~ 117 (416)
T 2pm9_A 67 D------------SKFNDLDWSH--NNKIIAGALDNGSLELYSTNEANNAINSMARFSNH--------SSS-------VK 117 (416)
T ss_dssp S------------SCEEEEEECS--SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS--------SSC-------CC
T ss_pred C------------CceEEEEECC--CCCeEEEEccCCeEEEeecccccccccchhhccCC--------ccc-------eE
Confidence 5 7899999997 667999999999999999987 2233322221 112 23
Q ss_pred ceEEecc-CCccccccccCCCCccccCCCCCcEEEeeeeccccccc--ccceeeeeccccccceeEEEecCC-CCEEEEe
Q 011257 176 PKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (490)
Q Consensus 176 ~~~~s~~-g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~ 251 (490)
+++|+|+ +. ++++++.|+.|++||+........ ...... ....|...|.+++|+|+ +.+|+++
T Consensus 118 ~~~~~~~~~~------------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 118 TVKFNAKQDN------------VLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECSSSTT------------BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred EEEEcCCCCC------------EEEEEcCCCeEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEE
Confidence 8899998 56 899999999999999322221000 000111 12578899999999999 7889998
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCccccccccceecc
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
.|+.|++||++... ....+... ....+|...|.+++|+|++..+|++++.|+ .|++||++++... +..+.
T Consensus 185 ~~dg~v~iwd~~~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~- 258 (416)
T 2pm9_A 185 GSSNFASIWDLKAKK-EVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLN- 258 (416)
T ss_dssp SSSSCEEEEETTTTE-EEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCC-
T ss_pred cCCCCEEEEECCCCC-cceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEee-
Confidence 89999999998544 33322110 112334789999999999757999999999 9999999986322 23443
Q ss_pred ccCCCccccccccccceEEEEECC-CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEE
Q 011257 328 QEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
.+|...|.+++|+| ++++|++++ |+.|++||+++ ++++..+..|... |.+++
T Consensus 259 ----------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~---------------v~~~~ 312 (416)
T 2pm9_A 259 ----------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNW---------------CFKTK 312 (416)
T ss_dssp ----------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSC---------------CCCEE
T ss_pred ----------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCc---------------eEEEE
Confidence 03447899999999 999999975 69999999997 8889999888765 45999
Q ss_pred EcCCC-CEEEEeecCCeEEEEecCCCceeeeEe-----------------------------------ccCCCceEEEEE
Q 011257 406 LSGDG-GRVATGSYSNLFRVFGCSEGSAESTTL-----------------------------------EASKNPMRRQVQ 449 (490)
Q Consensus 406 ~s~d~-~~l~s~~~dg~i~vw~~~~~~~~~~~~-----------------------------------~~~~~~v~~~~~ 449 (490)
|+|++ ++|++++.||.|++|++.+++.. ... ..|..++.+++|
T Consensus 313 ~s~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAPEAPDLFACASFDNKIEVQTLQNLTNT-LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECTTCTTEEEECCSSSEEEEEESCCCCCS-SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECCCCCCEEEEEecCCcEEEEEccCCCCC-cccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 99999 89999999999999999977642 111 116778889999
Q ss_pred ccCCCCCCCCccCcc
Q 011257 450 TPSRPSRPLGSLSGV 464 (490)
Q Consensus 450 sp~~~~~~~~~~~~~ 464 (490)
+|||+.++.++.++.
T Consensus 392 s~dg~~la~~~~d~~ 406 (416)
T 2pm9_A 392 AFGGKLVQITPDGKG 406 (416)
T ss_dssp ETTTEEECBCTTSSC
T ss_pred eeCCeEEEEeCCCCe
Confidence 999998888775543
No 25
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.9e-39 Score=307.90 Aligned_cols=300 Identities=11% Similarity=0.074 Sum_probs=218.1
Q ss_pred ccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 32 ~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..|...|+||+|+| ++++||+|+.||.|+|||+.++... ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence 35788899999999 5679999999999999999876532 234467888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++|+|+| .++.+|++++.||+|++||++++........+... ....+++|+|+++
T Consensus 165 --~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~------ 222 (435)
T 4e54_B 165 --GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN-------------IWFCSLDVSASSR------ 222 (435)
T ss_dssp --CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS-------------CCCCCEEEETTTT------
T ss_pred --CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC-------------ccEEEEEECCCCC------
Confidence 8899999997 45679999999999999999987665544333211 1123789999998
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEEcCCCCcee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+|++|+.||.|++|| ... +.... +.+|...|.+++|+|++. +|++| .|+.|++||++......
T Consensus 223 ------~l~~g~~dg~i~~wd-~~~-------~~~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 223 ------MVVTGDNVGNVILLN-MDG-------KELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp ------EEEEECSSSBEEEEE-SSS-------CBCCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred ------EEEEEeCCCcEeeec-cCc-------ceeEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 899999999999999 322 12223 378999999999999976 66777 89999999998554332
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
.+ ....+|...|++++|+|++ .+|++++.||+|++||+++++.. ..+..+....... ..+....
T Consensus 288 ~~-----~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~----~~~~~~~~~~~~~------~~~~~~~ 351 (435)
T 4e54_B 288 SF-----LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCP----LGLIPHPHRHFQH------LTPIKAA 351 (435)
T ss_dssp CC-----SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSE----EEECCCCCCCCSS------SCCCBCE
T ss_pred eE-----EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccc----eEEeccccccccc------ceeEEEE
Confidence 21 1346799999999999999 99999999999999999987643 2333222110000 1122334
Q ss_pred ECCCCCEEEEE------------cC-CeEEEEeccCCCCceeeeee-eccccccccccccCCCccceeeE-EEcCCCCEE
Q 011257 349 FARNGRHILSR------------DY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFEC-CLSGDGGRV 413 (490)
Q Consensus 349 ~sp~g~~l~sg------------~d-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l 413 (490)
|+|++.+++++ .+ +.|++||..+ ++.+..+.. |... |.++ +|+|+|++|
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~---------------v~s~~~fspdg~~l 415 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-GKMMCQLYDPESSG---------------ISSLNEFNPMGDTL 415 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-CCEEEEECCSSCCC---------------CCCEEEECTTSSCE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-CcEEEEEeCCCCCc---------------EEEEEEECCCCCEE
Confidence 45544444443 23 6899999997 777776653 3333 3365 699999999
Q ss_pred EEeecCCeEEEEecCCCce
Q 011257 414 ATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 414 ~s~~~dg~i~vw~~~~~~~ 432 (490)
++|+ |+.|+||++++++.
T Consensus 416 asg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEC-SSEEEECCCC----
T ss_pred EEEc-CCcEEEEECCcCee
Confidence 9876 78999999998865
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=295.48 Aligned_cols=282 Identities=15% Similarity=0.126 Sum_probs=207.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.+++|+| +|.+|++++ |+++++||.... .........................+++|+|++.
T Consensus 31 ~~v~~~~fs~--dG~~l~~~s-d~~~r~Wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-------- 95 (344)
T 4gqb_B 31 RQLEAARYRS--DGALLLGAS-SLSGRCWAGSLW----LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG-------- 95 (344)
T ss_dssp SEEEEEEECT--TSCEEEEEE-CCSSSCCCEEEE----EESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE--------
T ss_pred CCEEEEEECC--CCCEEEEEe-CCceEEeeceee----eeccccccCCcceeeeeeccCCCEEEEEEeCCCe--------
Confidence 6799999996 677887777 788999974211 1110000000000000011112233788999864
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+++++.||+|++||+..... ....+....+|...|.+++|+|++++|++| .|+.|++||+++. +...
T Consensus 96 -----l~~~s~dg~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~-- 163 (344)
T 4gqb_B 96 -----ILVASDSGAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLS-- 163 (344)
T ss_dssp -----EEEEETTSEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEE--
T ss_pred -----EEEEECCCEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEE--
Confidence 78999999999999322211 111222236899999999999999999999 8999999999854 4433
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+.+|...|.+++|+|++..+|++++.|++|++||+++++.. ..+..+ .|...+.+++|+|
T Consensus 164 -----~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~~----------~~~~~~~~~~~~p 224 (344)
T 4gqb_B 164 -----SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGCS----------APGYLPTSLAWHP 224 (344)
T ss_dssp -----EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC--------------CCCEEEEEECS
T ss_pred -----EEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----eeeecc----------eeeccceeeeecC
Confidence 467899999999999998678999999999999999987643 333221 1225689999999
Q ss_pred -CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC-CEEEEeecCCeEEEEecC
Q 011257 352 -NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 352 -~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~ 428 (490)
++++|++|+ |+.|++||+++ ++++..+.+|... |++++|+|++ ++|++|+.||+|+|||+.
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred CCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 567888875 69999999997 8999999998876 5699999998 589999999999999999
Q ss_pred CCceeeeEeccCCCceEEEEEccCCCCCCC
Q 011257 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
+++. ..+.+|.+.|++++|+|+++..+.
T Consensus 289 ~~~~--~~~~~H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 289 LSEL--FRSQAHRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp CCEE--EEECCCSSCEEEEEECSSSTTEEE
T ss_pred CCcE--EEEcCCCCCEEEEEEeCCCCeEEE
Confidence 8865 567899999999999999987553
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-38 Score=292.44 Aligned_cols=299 Identities=13% Similarity=0.161 Sum_probs=213.0
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-cc-CCcccceeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS 108 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~-h~~~~~~~~~ 108 (490)
...|.++|++++|+|+ +||+|+.|+.|++||+..+.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 3479999999999988 999999999999999875431 112223 23 77
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-------eEEEEeeeccCCCcCCCCCCccccccccCceEEec
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 181 (490)
..|++++|+| ++.+|++++.|++|++||+... +....+..+ .+.+ .+++|+|
T Consensus 59 ----~~v~~v~~sp--~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h--------~~~V-------~~v~~sp 117 (330)
T 2hes_X 59 ----KAIRSVAWRP--HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--------ENEV-------KGVAWSN 117 (330)
T ss_dssp ----SCEEEEEECT--TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------------CE-------EEEEECT
T ss_pred ----CCEEEEEECC--CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC--------CCcE-------EEEEECC
Confidence 8899999997 5679999999999999998642 122222111 1222 2889999
Q ss_pred cCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEE
Q 011257 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (490)
Q Consensus 182 ~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd 260 (490)
+|+ +|++++.|++|++||+.... ...++...+ .+|...|.+++|+|++++|+++ .|+.|++||
T Consensus 118 ~g~------------~las~s~D~~v~iwd~~~~~---~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 118 DGY------------YLATCSRDKSVWIWETDESG---EEYECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp TSC------------EEEEEETTSCEEEEECCTTC---CCCEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CCC------------EEEEEeCCCEEEEEeccCCC---CCeEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999 89999999999999931111 112333343 7899999999999999999999 899999999
Q ss_pred cCCCC-ceeeeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccc
Q 011257 261 LEISN-QSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (490)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (490)
..... .... .+.+|...|.+++|+|+ + ..|++|+.|++|++||++.+..... ..+.. ...+
T Consensus 182 ~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~~------~~~~ 245 (330)
T 2hes_X 182 DYDDDWECVA-------VLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQ--QEWVC------EAIL 245 (330)
T ss_dssp EETTEEEEEE-------EECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSC--EEEEE------EEEC
T ss_pred CCCCCeeEEE-------EccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcccc--ceeEE------eeec
Confidence 87432 2222 46789999999999998 5 6899999999999999876421100 00000 0011
Q ss_pred c-ccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCC--ceee-eeeeccccccccccccCCCccceeeEEEcC--CC
Q 011257 338 T-EIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG--PVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSG--DG 410 (490)
Q Consensus 338 ~-~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~ 410 (490)
. .|...|.+++|++++ +|+++ .|+.|++||... ++ .+.. +.+|.. ..|.+++|+| ++
T Consensus 246 ~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~h~~--------------~~v~~v~~~~~~~~ 309 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD-GEWKVFAKRALCHGV--------------YEINVVKWLELNGK 309 (330)
T ss_dssp CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET-TEEEEEEEESCTTTT--------------SCEEEEEEC-----
T ss_pred ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC-CceEEEecccccccc--------------ceEEEEEEecCCCc
Confidence 1 256889999999776 56664 679999999975 42 2222 223332 0156999999 78
Q ss_pred CEEEEeecCCeEEEEecCC
Q 011257 411 GRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~ 429 (490)
++|++|+.||.|+||+++.
T Consensus 310 ~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 310 TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CCEEEEETTSEEEEEEC--
T ss_pred eEEEEecCCCcEEEEEecc
Confidence 9999999999999999874
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-39 Score=307.03 Aligned_cols=327 Identities=13% Similarity=0.201 Sum_probs=243.9
Q ss_pred cccccccccEEEEEECCCCC-EEEEecCCCcEEEEEe----cCCCCCCCcccccccccceeecCCcccccccc------c
Q 011257 29 GEEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF------Q 97 (490)
Q Consensus 29 ~~~~~h~~~V~~~~~s~dg~-~latg~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------~ 97 (490)
.....|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++.. +.+ .+...+...+ .
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-----------WKL--TIIAELRHPFALSASSG 105 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-----------EEE--EEEEEEECCCCCC----
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-----------ccc--ccccccccccccccccc
Confidence 34556789999999999999 9999999999999999 665420 000 0000011112 2
Q ss_pred cCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCce
Q 011257 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (490)
Q Consensus 98 ~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (490)
+|. ..|++++|+| ++.+|++++.||.|++||... +.......+ .+.+ ..+
T Consensus 106 ~~~------------~~v~~~~~s~--~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~--------~~~v-------~~~ 155 (425)
T 1r5m_A 106 KTT------------NQVTCLAWSH--DGNSIVTGVENGELRLWNKTG-ALLNVLNFH--------RAPI-------VSV 155 (425)
T ss_dssp --C------------BCEEEEEECT--TSSEEEEEETTSCEEEEETTS-CEEEEECCC--------CSCE-------EEE
T ss_pred CCC------------CceEEEEEcC--CCCEEEEEeCCCeEEEEeCCC-CeeeeccCC--------CccE-------EEE
Confidence 244 7899999997 677999999999999999444 333333222 1122 278
Q ss_pred EEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccc---------------eeEEEec
Q 011257 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH---------------INSISNN 242 (490)
Q Consensus 178 ~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~i~~~ 242 (490)
+|+|+++ ++++++.++.+++||+ .. ......+ ..+... +.+++|+
T Consensus 156 ~~~~~~~------------~l~~~~~d~~i~iwd~-~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (425)
T 1r5m_A 156 KWNKDGT------------HIISMDVENVTILWNV-IS------GTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWV 215 (425)
T ss_dssp EECTTSS------------EEEEEETTCCEEEEET-TT------TEEEEEE-CCC---------------CCCBSCCEEE
T ss_pred EECCCCC------------EEEEEecCCeEEEEEC-CC------CcEEEEe-eccccCccceeeccccCCcceeeEEEEc
Confidence 9999998 8999999999999993 21 1222222 333333 8899999
Q ss_pred CCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccc
Q 011257 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (490)
Q Consensus 243 ~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (490)
+++. ++++ .++.|++||+...... . .+..|...|.+++|+|++ .+|++++.|+.|++||+++++.
T Consensus 216 ~~~~-~~~~~~~g~i~~~d~~~~~~~-~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~---- 281 (425)
T 1r5m_A 216 DDDK-FVIPGPKGAIFVYQITEKTPT-G-------KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNS---- 281 (425)
T ss_dssp ETTE-EEEECGGGCEEEEETTCSSCS-E-------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSC----
T ss_pred CCCE-EEEEcCCCeEEEEEcCCCcee-e-------eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCcc----
Confidence 9865 5555 8999999999855433 2 346789999999999999 8999999999999999998754
Q ss_pred cceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccc
Q 011257 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
+..+..+ ...|.+++|+|++ +++++ .|+.|++||+++ ++.+..+..|...
T Consensus 282 ~~~~~~~------------~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~--------------- 332 (425)
T 1r5m_A 282 QNCFYGH------------SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP--------------- 332 (425)
T ss_dssp SEEECCC------------SSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------
T ss_pred ceEecCC------------CccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------
Confidence 2444444 3789999999999 77776 569999999997 7888888776654
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCc--------------------eeeeEeccCCC--ceEEEEEccCCCCCCC
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGS--------------------AESTTLEASKN--PMRRQVQTPSRPSRPL 458 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~--------------------~~~~~~~~~~~--~v~~~~~sp~~~~~~~ 458 (490)
|.+++|+|++++|++++.||.|++||+.+++ . +..+..|.. .|.+++|+|+++..+.
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL-YASYQSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCE-EEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh-hhhhcCcccCCceEEEEccCCCceEEE
Confidence 5699999999999999999999999999877 4 688889976 9999999999986655
Q ss_pred CccC
Q 011257 459 GSLS 462 (490)
Q Consensus 459 ~~~~ 462 (490)
++.+
T Consensus 412 ~~~d 415 (425)
T 1r5m_A 412 AYSL 415 (425)
T ss_dssp EESS
T ss_pred EecC
Confidence 5433
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.4e-38 Score=297.38 Aligned_cols=305 Identities=14% Similarity=0.189 Sum_probs=233.8
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
....+.+|. +.|++++|+| ++.+|++|+.||+|++||+.+++.......+.. .+
T Consensus 58 ~~~~l~gH~------------~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--------~v---- 111 (380)
T 3iz6_a 58 CCRTLQGHS------------GKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--------WV---- 111 (380)
T ss_dssp EEEEECCCS------------SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--------TC----
T ss_pred Eeecccccc------------cEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccceEEecCCC--------CE----
Confidence 456688898 8899999997 667999999999999999999887665554421 22
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC-CCEEEE
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFIS 250 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~ 250 (490)
..++|+|+|+ ++++++.|+.+++|++.............+. +.+|...|.++.|.|+ +..|++
T Consensus 112 ---~~~~~s~~g~------------~las~~~d~~v~iw~~~~~~~~~~~~~~~~~-~~gh~~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 112 ---MECAFAPNGQ------------SVACGGLDSACSIFNLSSQADRDGNMPVSRV-LTGHKGYASSCQYVPDQETRLIT 175 (380)
T ss_dssp ---CCCEECTTSS------------EEEECCSSSCCEEEECCCCSSCCCSSTTCCB-CCCCSSCCCCCBCCSSSSSCEEE
T ss_pred ---EEEEECCCCC------------EEEEeeCCCcEEEEECCCCccccCCccceee-ccCCCcceEEEEEecCCCCEEEE
Confidence 2789999999 8999999999999994322211111112222 3799999999999997 456888
Q ss_pred e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccccceeccc
Q 011257 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 251 ~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
| .|+.|++||+++... ...+.. ....+|...|.+++|+| ++ .+|++|+.|++|++||++..... +..+.+|
T Consensus 176 ~s~D~~i~~wd~~~~~~-~~~~~~--~~~~~h~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~---~~~~~~h 248 (380)
T 3iz6_a 176 GSGDQTCVLWDVTTGQR-ISIFGS--EFPSGHTADVLSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA---VRTYHGH 248 (380)
T ss_dssp ECTTSCEEEECTTTCCE-EEEECC--CSSSSCCSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC---CEEECCC
T ss_pred ECCCCcEEEEEcCCCcE-EEEeec--ccCCCCccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc---eEEECCc
Confidence 8 899999999985543 332211 12367899999999987 55 89999999999999999854322 3445444
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
...|.+++|+|++++|++|+ |++|++||+++ ++.+..+..+..... .....|++++|+
T Consensus 249 ------------~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s 307 (380)
T 3iz6_a 249 ------------EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFS 307 (380)
T ss_dssp ------------SSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEEC
T ss_pred ------------CCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEEC
Confidence 48899999999999999985 69999999997 777777765433210 111125699999
Q ss_pred CCCCEEEEeecCCeEEEEecCCCceeeeEe----ccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
|+|++|++|+.||.|++||+.+++. ...+ .+|...|.+++|+||+...+.++.++..+.
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 9999999999999999999998876 3444 689999999999999998887776654433
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.7e-38 Score=318.97 Aligned_cols=307 Identities=15% Similarity=0.228 Sum_probs=233.1
Q ss_pred cccccccEEEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg-~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...|.+.|++++|+|++ ++|++|+.|++|++|++...... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence 44799999999999864 79999999999999999765421 111234577888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|++++|+| ++.+|++|+.||+|++||+.++........+. +.+. +++|+|+++
T Consensus 431 ---~~v~~v~~s~--~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~--------~~v~-------~~~~s~~~~----- 485 (694)
T 3dm0_A 431 ---HFVEDVVLSS--DGQFALSGSWDGELRLWDLAAGVSTRRFVGHT--------KDVL-------SVAFSLDNR----- 485 (694)
T ss_dssp ---SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEE-------EEEECTTSS-----
T ss_pred ---CcEEEEEECC--CCCEEEEEeCCCcEEEEECCCCcceeEEeCCC--------CCEE-------EEEEeCCCC-----
Confidence 8899999996 67799999999999999999987666554332 1222 789999999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC--CEEEEe-cCCcEEEEEcCCCCc
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
++++++.|++|++||+ .... ... ......+|...|.+++|+|++ ..|+++ .|+.|++||++...
T Consensus 486 -------~l~s~s~D~~i~iwd~-~~~~---~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~- 552 (694)
T 3dm0_A 486 -------QIVSASRDRTIKLWNT-LGEC---KYT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK- 552 (694)
T ss_dssp -------CEEEEETTSCEEEECT-TSCE---EEE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-
T ss_pred -------EEEEEeCCCEEEEEEC-CCCc---cee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-
Confidence 8999999999999992 2110 000 111125788999999999986 578888 89999999998543
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
... .+.+|...|++++|+|++ ++|++|+.||+|++||+++++.. ..+..+ ..|.+
T Consensus 553 ~~~-------~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~~-------------~~v~~ 607 (694)
T 3dm0_A 553 LRS-------TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEAN-------------SVIHA 607 (694)
T ss_dssp EEE-------EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBCS-------------SCEEE
T ss_pred EEE-------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecCC-------------CcEEE
Confidence 333 357899999999999999 99999999999999999987642 333322 57999
Q ss_pred EEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccc----cccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD----LYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 347 l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
++|+|++.+|+++.++.|++||+++ +..+..+..+......... .........+++++|+|||++|++|+.||.|
T Consensus 608 ~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 9999999999999888899999997 7777766544321100000 0001111225689999999999999999999
Q ss_pred EEEecC
Q 011257 423 RVFGCS 428 (490)
Q Consensus 423 ~vw~~~ 428 (490)
+||++.
T Consensus 687 ~iW~i~ 692 (694)
T 3dm0_A 687 RVWGIG 692 (694)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 999986
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=291.68 Aligned_cols=295 Identities=13% Similarity=0.164 Sum_probs=240.1
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|++++||+|+.||.|++||+.+++ ....+.+|.
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 74 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT---------- 74 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC----------
Confidence 45799999999999999999999999999999998765 346677888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++|+| ++.+|++++.||.|++||+.+++......... ....++|+|+++
T Consensus 75 --~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------------~v~~~~~~~~~~------ 128 (369)
T 3zwl_B 75 --GTIWSIDVDC--FTKYCVTGSADYSIKLWDVSNGQCVATWKSPV----------------PVKRVEFSPCGN------ 128 (369)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECSS----------------CEEEEEECTTSS------
T ss_pred --CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEeecCC----------------CeEEEEEccCCC------
Confidence 8899999997 66799999999999999999988776655321 123789999999
Q ss_pred ccCCCCccccCCCC-----CcEEEeeeeccccccccc----ceeeeecccccc--ceeEEEecCCCCEEEEe-cCCcEEE
Q 011257 191 GCASNDSSFPPGGV-----SSLRLPVVVTSQETNLVA----GCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINL 258 (490)
Q Consensus 191 ~~~~~~~l~~~~~~-----g~v~iw~~~~~~~~~~~~----~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~~ 258 (490)
++++++.+ +.+++||+.......... .....+ ..|.. .+.+++|+|+++.|+++ .|+.|++
T Consensus 129 ------~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 201 (369)
T 3zwl_B 129 ------YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201 (369)
T ss_dssp ------EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEE
T ss_pred ------EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEE
Confidence 78888888 999999943332211111 111111 34544 89999999999999999 8999999
Q ss_pred EEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccc
Q 011257 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (490)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (490)
||++....... .+..|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+...
T Consensus 202 ~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~---------- 259 (369)
T 3zwl_B 202 YDVSNNYEYVD-------SIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYETD---------- 259 (369)
T ss_dssp EETTTTTEEEE-------EEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEECS----------
T ss_pred EECCCCcEeEE-------EEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCcee----eeecCC----------
Confidence 99986455444 346688999999999999 99999999999999999987643 344322
Q ss_pred ccccceEEEEECCCCCEEEEEc-CC--------------eEEEEeccCCCCceeeeeeeccccccccccccCCCccceee
Q 011257 339 EIIASISDIKFARNGRHILSRD-YM--------------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 339 ~h~~~i~~l~~sp~g~~l~sg~-d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
..+.+++|+|+++++++++ ++ .+++||+.+ ++++..+.+|... |.+
T Consensus 260 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~---------------v~~ 320 (369)
T 3zwl_B 260 ---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGP---------------LNT 320 (369)
T ss_dssp ---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSC---------------EEE
T ss_pred ---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCc---------------EEE
Confidence 6799999999999999974 45 899999997 8888899888765 569
Q ss_pred EEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
++|+|++++|++++.||.|++|+++.+..
T Consensus 321 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 321 VAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred EEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 99999999999999999999999987643
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-38 Score=296.57 Aligned_cols=315 Identities=13% Similarity=0.141 Sum_probs=211.2
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 40 ~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
.+.+.+++.++.+ +.+.....|++.... ..+|+ ..|++|+
T Consensus 10 g~d~g~~~~~~~~-~g~~~~~~w~~p~~~---------------------------p~~H~------------~~V~~v~ 49 (357)
T 4g56_B 10 GVDLGTENLYFQS-NGSSKGSAWGRPVTA---------------------------PACME------------VQIGAVR 49 (357)
T ss_dssp ----------------------------------------------------------CCC------------SEEEEEE
T ss_pred CCCCCccceEEec-CCCccccccCCCCCC---------------------------ccccc------------CCEEEEE
Confidence 3455666645444 446678889875322 34677 8899999
Q ss_pred EeecCCCcEEEEEeC------cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 120 WCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 120 ~~p~~~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
|+| +|.+|++++. |+.|++|+..++.......... ...... ..+++|+|+++
T Consensus 50 fSp--DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~----~~~~~~-------V~~~~~s~d~~--------- 107 (357)
T 4g56_B 50 YRR--DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG----VQTEAG-------VTDVAWVSEKG--------- 107 (357)
T ss_dssp ECS--SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE----EECSSC-------EEEEEEETTTE---------
T ss_pred ECC--CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc----CCCCCC-------EEEEEEcCCCC---------
Confidence 997 7889999987 7789999877654221110000 000111 23789999986
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+++++.||+|++||+...... . .......+|...|.+++|+|++++|++| .|+.|++||+++. +...
T Consensus 108 ----~l~~s~dg~v~lWd~~~~~~~-~---~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~~~--- 175 (357)
T 4g56_B 108 ----ILVASDSGAVELWEILEKESL-L---VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLK--- 175 (357)
T ss_dssp ----EEEEETTSCEEEC---------C---CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-EEEE---
T ss_pred ----EEEEECCCEEEEeecccccee-E---EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEE---
Confidence 456788999999994332211 1 1111225899999999999999999999 8999999999854 3333
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
.+.+|...|++++|+|++..++++++.||+|++||+++++.. ..+.. ..|...+.+++|+|+
T Consensus 176 ----~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~~----------~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 176 ----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRIDF----------CASDTIPTSVTWHPE 237 (357)
T ss_dssp ----EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCCC----------TTCCSCEEEEEECTT
T ss_pred ----EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeeee----------ccccccccchhhhhc
Confidence 357899999999999998568999999999999999987643 22221 123367999999997
Q ss_pred -CCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC-CEEEEeecCCeEEEEecCC
Q 011257 353 -GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 353 -g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~vw~~~~ 429 (490)
+.+|++|+ |+.|++||+++ ++++..+.+|... |++++|+|++ ++||+|+.||.|+|||+++
T Consensus 238 ~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 238 KDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp STTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred ccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 46788874 69999999997 8888888888765 5699999987 5899999999999999999
Q ss_pred CceeeeEeccCCCceEEEEEcc-CCCCCCCCccCcc
Q 011257 430 GSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGV 464 (490)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~sp-~~~~~~~~~~~~~ 464 (490)
++. + ...+|.+.|++++|+| ++...+.++.++.
T Consensus 302 ~~~-~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 302 SEV-F-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp CEE-E-EECCCSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred CcE-e-EECCCCCCEEEEEEeCCCCCEEEEEcCCCe
Confidence 876 3 4458999999999999 6666655555443
No 33
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.3e-38 Score=295.66 Aligned_cols=313 Identities=10% Similarity=0.115 Sum_probs=232.9
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|.++|++++|+|++++||+|+.|+.|++||+.+++. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 4889999999999999999999999999999986531 1245677887
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|++++|+| ++.+|++++.||.|++||+.+++.........+ ... ..+++|+|+++
T Consensus 53 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~-------v~~~~~~~~~~-------- 109 (372)
T 1k8k_C 53 GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI------NRA-------ARCVRWAPNEK-------- 109 (372)
T ss_dssp SCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEECCCC------SSC-------EEEEEECTTSS--------
T ss_pred CcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC------CCc-------eeEEEECCCCC--------
Confidence 8899999997 667999999999999999999876555433221 112 23789999998
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCC--------
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI-------- 263 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~-------- 263 (490)
++++++.++.+++||+.... ..........+|...|.+++|+|++++|+++ .|+.|++||++.
T Consensus 110 ----~l~~~~~d~~v~i~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 110 ----KFAVGSGSRVISICYFEQEN----DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp ----EEEEEETTSSEEEEEEETTT----TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred ----EEEEEeCCCEEEEEEecCCC----cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc
Confidence 89999999999999932221 1112233346788999999999999999999 899999999742
Q ss_pred ---------CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 264 ---------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 264 ---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
...... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++. +..+..+.
T Consensus 182 ~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~----- 244 (372)
T 1k8k_C 182 PTPWGSKMPFGELMF-------ESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMA----VATLASET----- 244 (372)
T ss_dssp CBTTBSCCCTTCEEE-------ECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTE----EEEEECSS-----
T ss_pred ccccccccchhhheE-------ecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCce----eEEEccCC-----
Confidence 122222 356789999999999999 8999999999999999988764 34555443
Q ss_pred ccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCc---eeeeeeecc----------------cccccc-----
Q 011257 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQVHEH----------------LRPKLC----- 390 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~---~~~~~~~~~----------------~~~~~~----- 390 (490)
.+|.+++|+|++++|++|.|+.|++|++...... +..+..+.. ......
T Consensus 245 -------~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 245 -------LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp -------CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred -------CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 6899999999999999998899999999841111 111110000 000000
Q ss_pred -ccccCCCccceeeEEEc-CCC---CEEEEeecCCeEEEEecCCCcee
Q 011257 391 -DLYENDSIFDKFECCLS-GDG---GRVATGSYSNLFRVFGCSEGSAE 433 (490)
Q Consensus 391 -~~~~~~~~~~v~~~~~s-~d~---~~l~s~~~dg~i~vw~~~~~~~~ 433 (490)
..........|++++|. ++| ++|++|+.||.|++|++.+++..
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 00001122247799866 677 99999999999999999877653
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-37 Score=282.02 Aligned_cols=287 Identities=17% Similarity=0.288 Sum_probs=231.5
Q ss_pred cCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCC
Q 011257 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (490)
Q Consensus 86 ~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
..|.+.....+.+|. +.|++++|+| ++.+|++++.||.|++|++.+++.......+. .
T Consensus 9 ~~~~~~~~~~~~gh~------------~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--------~ 66 (312)
T 4ery_A 9 VKPNYALKFTLAGHT------------KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTISGHK--------L 66 (312)
T ss_dssp CCCCCEEEEEECCCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCS--------S
T ss_pred CCCCceeEEEEcccC------------CcEEEEEECC--CCCEEEEeeCCCeEEEEeCCCcccchhhccCC--------C
Confidence 445666777888998 8899999997 67799999999999999999887666543321 1
Q ss_pred CccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC
Q 011257 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (490)
Q Consensus 166 ~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (490)
.+ ..++|+|+++ ++++++.|+.|++||+ . ..++...+ .+|...|.+++|+|++
T Consensus 67 ~v-------~~~~~~~~~~------------~l~s~~~d~~i~vwd~-~------~~~~~~~~-~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 67 GI-------SDVAWSSDSN------------LLVSASDDKTLKIWDV-S------SGKCLKTL-KGHSNYVFCCNFNPQS 119 (312)
T ss_dssp CE-------EEEEECTTSS------------EEEEEETTSEEEEEET-T------TCCEEEEE-ECCSSCEEEEEECSSS
T ss_pred ce-------EEEEEcCCCC------------EEEEECCCCEEEEEEC-C------CCcEEEEE-cCCCCCEEEEEEcCCC
Confidence 22 2789999998 8999999999999992 2 12333443 7899999999999999
Q ss_pred CEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccce
Q 011257 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (490)
Q Consensus 246 ~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 324 (490)
++|++| .|+.|++||+++... .. .+..|...|.+++|+|++ .+|++++.||.|++||+++++.. ..
T Consensus 120 ~~l~s~~~d~~i~iwd~~~~~~-~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~ 186 (312)
T 4ery_A 120 NLIVSGSFDESVRIWDVKTGKC-LK-------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KT 186 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCE-EE-------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EE
T ss_pred CEEEEEeCCCcEEEEECCCCEE-EE-------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eE
Confidence 999999 899999999985543 32 356789999999999999 89999999999999999987542 22
Q ss_pred eccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceee
Q 011257 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
+... +...+..++|+|++++|++++ |+.|++||+++ ++.+..+.+|..... ...
T Consensus 187 ~~~~-----------~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~-------------~~~ 241 (312)
T 4ery_A 187 LIDD-----------DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKY-------------CIF 241 (312)
T ss_dssp ECCS-----------SCCCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSS-------------CCC
T ss_pred Eecc-----------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceE-------------EEE
Confidence 2221 225789999999999999975 69999999997 788888877765321 012
Q ss_pred EEE-cCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 404 CCL-SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 404 ~~~-s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
..+ .+++.+|++|+.||.|++||+.+++. +..+.+|.+.|.+++|+|+++..+.++
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchh-hhhhhccCCcEEEEeecCcCCceEEEE
Confidence 334 46889999999999999999999887 688999999999999999998777654
No 35
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-38 Score=293.44 Aligned_cols=303 Identities=12% Similarity=0.103 Sum_probs=215.0
Q ss_pred cccEEEEEECCCCCEEEEecCCC-------cEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 35 VDIISAIEFDKSGDHLATGDRGG-------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
.-||+|++|+|||++||+|+.+. .|++|++....... .... .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~--~~~~-----------~~~~~~~l~~~~------- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE--KEQF-----------HILSEFALEDND------- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH--HHHE-----------EEEEEEECCTTS-------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcce--eeee-----------eeeeEEEccCCC-------
Confidence 35899999999999999987543 59999998655210 0000 000112355666
Q ss_pred eeeeccceeEEEEeecCCCcEEEEE-----------eCcCeEEEEEccCCe--EEEEeeeccCCCcCCCCCCcccccccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLS-----------TNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~-----------~~dg~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (490)
..|.++++. +..++++ +.|+++|+|++.... ............ .......
T Consensus 74 -----~~v~s~~~~----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 136 (365)
T 4h5i_A 74 -----DSPTAIDAS----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS--------TNADDYT 136 (365)
T ss_dssp -----CCCCEEEEE----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC--------CCTTCCE
T ss_pred -----CceEEEEeC----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec--------CCcccCE
Confidence 778888775 3355554 457889999987542 222222221110 0011122
Q ss_pred CceEEeccCCccccccccCCCCccc--cCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEec
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSF--PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD 252 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~--~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 252 (490)
..++|+|||+ +++ +++.|++|++||+ . ...+...+ .|...|.+++|+|+|++++++.
T Consensus 137 ~~v~fSpDg~------------~la~as~~~d~~i~iwd~-~------~~~~~~~~--~~~~~V~~v~fspdg~~l~s~s 195 (365)
T 4h5i_A 137 KLVYISREGT------------VAAIASSKVPAIMRIIDP-S------DLTEKFEI--ETRGEVKDLHFSTDGKVVAYIT 195 (365)
T ss_dssp EEEEECTTSS------------CEEEEESCSSCEEEEEET-T------TTEEEEEE--ECSSCCCEEEECTTSSEEEEEC
T ss_pred EEEEEcCCCC------------EEEEEECCCCCEEEEeEC-C------CCcEEEEe--CCCCceEEEEEccCCceEEecc
Confidence 3789999999 544 5668999999992 1 22233333 4678899999999999999996
Q ss_pred CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCccccccccceeccc
Q 011257 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 253 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
++.+.+|+..+....... ....|...|.+++|+|++ ..+++++.|+ .+++||+............+
T Consensus 196 ~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~--- 265 (365)
T 4h5i_A 196 GSSLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV--- 265 (365)
T ss_dssp SSCEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE---
T ss_pred ceeEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeee---
Confidence 666777877755544332 356788999999999999 8999998887 68889987654321112223
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeee-eeeccccccccccccCCCccceeeEEE
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
.+|...|++++|+|||++||+|+ |++|+|||+++ ++++..+ .+|... |++++|
T Consensus 266 ---------~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~---------------V~~v~f 320 (365)
T 4h5i_A 266 ---------TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFA---------------ITEVTI 320 (365)
T ss_dssp ---------ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSC---------------EEEEEE
T ss_pred ---------cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCC---------------EEEEEE
Confidence 34457899999999999999985 69999999997 8888775 678766 679999
Q ss_pred cCCCCEEEEeecCCeEEEEecCCC
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+|||++||+|+.|++|+||++...
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999754
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=285.97 Aligned_cols=308 Identities=13% Similarity=0.195 Sum_probs=219.1
Q ss_pred cccccccCCcccceeeeeeecc-ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~-~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
.+..+.+|. + .|.+++|+| ++.+|++|+.|++|+|||+.++.......... .+.+.+.
T Consensus 7 ~~~~~~~h~------------~~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~-----~h~~~v~-- 65 (345)
T 3fm0_A 7 LLGRVPAHP------------DSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-----GHQRTVR-- 65 (345)
T ss_dssp EEEEECCST------------TSCEEEEEECT--TSSCEEEEETTSCEEEEEEETTEEEEEEEECS-----SCSSCEE--
T ss_pred EeeeecCCC------------CCcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCcceeeeeecc-----ccCCcEE--
Confidence 456677887 5 899999997 67799999999999999999886443222110 0112222
Q ss_pred ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 171 ~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
+++|+|+|+ +|++++.|+++++|++ .... ..+...+ .+|...|.+++|+|++++|++
T Consensus 66 -----~~~~sp~g~------------~l~s~s~D~~v~iw~~-~~~~----~~~~~~~-~~h~~~v~~v~~sp~~~~l~s 122 (345)
T 3fm0_A 66 -----KVAWSPCGN------------YLASASFDATTCIWKK-NQDD----FECVTTL-EGHENEVKSVAWAPSGNLLAT 122 (345)
T ss_dssp -----EEEECTTSS------------EEEEEETTSCEEEEEE-CCC-----EEEEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred -----EEEECCCCC------------EEEEEECCCcEEEEEc-cCCC----eEEEEEc-cCCCCCceEEEEeCCCCEEEE
Confidence 889999999 8999999999999993 2111 1233333 789999999999999999999
Q ss_pred e-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 251 ~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
| .|+.|++||+......... ..+.+|...|.+++|+|++ .+|++|+.|++|++||+++++.. ....+.+
T Consensus 123 ~s~D~~v~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~--~~~~~~~-- 192 (345)
T 3fm0_A 123 CSRDKSVWVWEVDEEDEYECV-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV--CCATLEG-- 192 (345)
T ss_dssp EETTSCEEEEEECTTSCEEEE-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE--EEEEECC--
T ss_pred EECCCeEEEEECCCCCCeEEE-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE--EEEEecC--
Confidence 9 8999999999855432211 1357899999999999999 99999999999999998875421 1233443
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeee-eeccccccccccccCCCccceeeEEEc
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
|...|.+++|+|+|++|++++ |++|++||...++....... ........+..+. ......|++++|+
T Consensus 193 ----------h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 193 ----------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWC 261 (345)
T ss_dssp ----------CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEEC
T ss_pred ----------CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEe
Confidence 458899999999999999975 69999999754221110000 0000000000000 0011126699999
Q ss_pred CCCCEEEEeecCCeEEEEecCCCce--------eeeEeccCCCceEEEEEccCCC-CCCCCccCcc
Q 011257 408 GDGGRVATGSYSNLFRVFGCSEGSA--------ESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGV 464 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~-~~~~~~~~~~ 464 (490)
|++..|++++.|+.|++|+...+.. ......+|...|++++|+|+++ ..+.++.++.
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 9999999999999999999876531 1233468999999999999986 4444444433
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-37 Score=282.06 Aligned_cols=258 Identities=13% Similarity=0.223 Sum_probs=198.7
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|+|++||+|+.|++|+|||+.... .+.+..+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------~~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------BCCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------cEEEEEEcccc----------
Confidence 34799999999999999999999999999999987532 11356788998
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++++|+|..++.+|++++.|++|++||+.+++....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~--------------------------------------- 92 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--------------------------------------- 92 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC---------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE---------------------------------------
Confidence 889999998644477999999999999999876531100
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
.. ..+|...|.+++|+|+ +.+|+++ .|+.|++||++.....
T Consensus 93 -----------------------------------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 93 -----------------------------------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp -----------------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred -----------------------------------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 00 2467788999999997 8899998 8999999999854322
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCC------------CcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccc
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (490)
.. ..+.+|...|.+++|+|++ .++|++|+.|++|++||+++++........+
T Consensus 137 ~~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l---------- 200 (297)
T 2pm7_B 137 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL---------- 200 (297)
T ss_dssp CC------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE----------
T ss_pred ee------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe----------
Confidence 11 1356799999999999972 2699999999999999998764211112333
Q ss_pred cccccccceEEEEECCCC---CEEEEEc-CCeEEEEeccCCCCc-e-eee--eeeccccccccccccCCCccceeeEEEc
Q 011257 336 FFTEIIASISDIKFARNG---RHILSRD-YMTLKLWDINMDSGP-V-ATF--QVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 336 ~~~~h~~~i~~l~~sp~g---~~l~sg~-d~~i~iwd~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
.+|...|.+++|+|++ .+|++++ |++|+|||++..... . ..+ ..|.. .|++++|+
T Consensus 201 --~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s 263 (297)
T 2pm7_B 201 --EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASWS 263 (297)
T ss_dssp --CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEEC
T ss_pred --cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEEC
Confidence 3455899999999985 8899875 699999999852211 1 122 12222 26699999
Q ss_pred CCCCEEEEeecCCeEEEEecCC
Q 011257 408 GDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|++++||+++.||.|+||+...
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999873
No 38
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.6e-37 Score=308.49 Aligned_cols=392 Identities=12% Similarity=0.081 Sum_probs=269.1
Q ss_pred cccccccccccc-cccccccccccc-EEEEEECC--CCCEEEEecCCCcEEEEEecCC--------CCCCCccccccccc
Q 011257 14 PLEWKFSQVFGE-RTAGEEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDT--------RDNGGQRRDLEMMD 81 (490)
Q Consensus 14 ~~~w~~~~~~~~-~~~~~~~~h~~~-V~~~~~s~--dg~~latg~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~ 81 (490)
...|++...-.. ........|.+. |++++|+| ++++||+|+.||.|++||+.++ ... .....+...+
T Consensus 41 v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~~~~v 119 (615)
T 1pgu_A 41 AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK-SEFQVLAGPI 119 (615)
T ss_dssp EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE-EEEECCSSCE
T ss_pred EEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccccc-chhhcccccE
Confidence 345666531000 223334579999 99999999 9999999999999999999754 211 1122345678
Q ss_pred ceeecCCccccccccccCCc---c------cceeeee-eeccceeEEEEeecCCCc-EEEEEeCcCeEEEEEccCCeEEE
Q 011257 82 YSMSRHPEFRYKTEFQSHEP---E------FDYLKSL-EIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKK 150 (490)
Q Consensus 82 ~~~~~~p~~~~~~~~~~h~~---~------~~~~~~~-~~~~~V~~v~~~p~~~~~-~l~~~~~dg~i~lwd~~~~~~~~ 150 (490)
.+++|+|+.+++........ . -..+..+ .+...|++++|+| ++. .+++++.|+.|++||+.+++...
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~ 197 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSA 197 (615)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred EEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceee
Confidence 88999998766543321100 0 0011111 3458899999997 444 79999999999999999887666
Q ss_pred EeeeccCCCcCCCCCCccccccccCceEEecc-CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeec
Q 011257 151 VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA 229 (490)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~ 229 (490)
....+... ... ..+++|+|+ ++ ++++++.++.|++||+ .. .+....+.
T Consensus 198 ~~~~~~~~-----~~~-------v~~~~~~~~~~~------------~l~~~~~dg~i~vwd~-~~------~~~~~~~~ 246 (615)
T 1pgu_A 198 SDRTHHKQ-----GSF-------VRDVEFSPDSGE------------FVITVGSDRKISCFDG-KS------GEFLKYIE 246 (615)
T ss_dssp EECSSSCT-----TCC-------EEEEEECSTTCC------------EEEEEETTCCEEEEET-TT------CCEEEECC
T ss_pred eecccCCC-----Cce-------EEEEEECCCCCC------------EEEEEeCCCeEEEEEC-CC------CCEeEEec
Confidence 54432110 001 237899999 88 8999999999999992 21 22333332
Q ss_pred c---ccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC-------------------------------
Q 011257 230 H---AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK------------------------------- 274 (490)
Q Consensus 230 ~---~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~------------------------------- 274 (490)
. .|...|.+++|+ ++++|+++ .|+.|++||+++... ...+...
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence 4 888999999999 99999998 899999999984432 2111110
Q ss_pred -------CCccCC---------------------------------CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 275 -------PANMED---------------------------------LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 275 -------~~~~~~---------------------------------~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
...+.+ |...|.+++| +++ ..|++++.|+.|++||+.+
T Consensus 325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEccc
Confidence 011223 3444555555 334 5777788888888887654
Q ss_pred ccc----------------------------------c-------------------------ccccceeccccCCCccc
Q 011257 315 SAL----------------------------------C-------------------------DTHSKLFEEQEAPGTRS 335 (490)
Q Consensus 315 ~~~----------------------------------~-------------------------~~~~~~~~~~~~~~~~~ 335 (490)
++. . ...++.+..........
T Consensus 403 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccc
Confidence 221 0 00000000000000003
Q ss_pred cccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeee-eccccccccccccCCCccceeeEEEcC-----
Q 011257 336 FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSG----- 408 (490)
Q Consensus 336 ~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~----- 408 (490)
.+.+|...|++++|+|++++|++++ |+.|++||+.+ ++++..+.+ |... |++++|+|
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~---------------v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK---------------INAISWKPAEKGA 546 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC---------------EEEEEECCCC---
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc---------------eeEEEEcCccccc
Confidence 4566889999999999999999984 69999999997 787777766 6554 56999999
Q ss_pred -----CCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 409 -----DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 409 -----d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
++++|++++.||.|++||+.++...+..+.+|...|.+++|+|+++ ...++
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~ 602 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 602 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEE
T ss_pred cccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEec
Confidence 9999999999999999999998444788999999999999999998 44443
No 39
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-37 Score=321.93 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=161.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|.+.|++++|+|++++||+|+.||.|+||+..+.+. .. ...|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~-~~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VI-KLEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EE-ECSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EE-EcCCC----------
Confidence 357899999999999999999999999999999765431 11 12355
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|.+++|+| +.+|++++.|++|++||+.+++.......+ +.+ .+++|+|+++
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~---------~~V-------~~v~~sp~g~------ 111 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP---------GKI-------TSIDTDASLD------ 111 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS---------SCE-------EEEECCTTCS------
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC---------CCE-------EEEEECCCCC------
Confidence 7799999997 459999999999999999998766554322 122 2789999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccce--ee---eeccccccceeEEEecCC-CCEEEEe-cCCcEEEEEcCC
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC--RR---IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEI 263 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~--~~---~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~~wd~~~ 263 (490)
++++|+.||.|++||+ ...... .... .. ....+|...|.+++|+|+ +..+++| .|+.| +||+++
T Consensus 112 ------~l~sgs~dg~V~lwd~-~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~ 182 (902)
T 2oaj_A 112 ------WMLIGLQNGSMIVYDI-DRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE 182 (902)
T ss_dssp ------EEEEEETTSCEEEEET-TTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT
T ss_pred ------EEEEEcCCCcEEEEEC-CCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC
Confidence 8999999999999993 222111 0000 00 112678899999999996 5678888 89999 999985
Q ss_pred CCceeeeeecCC-----------CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc
Q 011257 264 SNQSFNIVDVKP-----------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 264 ~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (490)
. +....+.... .....|...|++++|+|++ .+|++|+.||+|++||+++++
T Consensus 183 ~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 183 N-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp T-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred C-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence 4 4443332110 0123456889999999999 999999999999999997764
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.3e-37 Score=290.11 Aligned_cols=304 Identities=12% Similarity=0.076 Sum_probs=224.5
Q ss_pred cccccccEEEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg-~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~--------- 118 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG--------- 118 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT---------
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC---------
Confidence 34789999999999999 99999999999999999876532 112234677
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.+++|+| .++.+|++++.|+.|++||+.+............ ...+ .+++|+|+++
T Consensus 119 ---~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~v-------~~~~~~~~~~----- 176 (383)
T 3ei3_B 119 ---DAITGMKFNQ-FNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSW------DYWY-------CCVDVSVSRQ----- 176 (383)
T ss_dssp ---CBEEEEEEET-TEEEEEEEEETTTEEEEEETTSCEEEEEECCCCS------SCCE-------EEEEEETTTT-----
T ss_pred ---CceeEEEeCC-CCCCEEEEEeCCCEEEEEECCCCceEEEeccCCC------CCCe-------EEEEECCCCC-----
Confidence 8899999997 2457999999999999999997655444332211 1122 2889999998
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEEcCCCCce
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
++++++.|+.|++|| +. ......+ .+|...|.+++|+|+++ +|+++ .|+.|++||++.....
T Consensus 177 -------~l~~~~~d~~i~i~d-~~-------~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 177 -------MLATGDSTGRLLLLG-LD-------GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp -------EEEEEETTSEEEEEE-TT-------SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred -------EEEEECCCCCEEEEE-CC-------CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 899999999999999 22 2233333 68999999999999999 88888 8999999999863221
Q ss_pred eeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc-----cccccccc
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-----RSFFTEII 341 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~ 341 (490)
...+ ...+|...|.+++|+| ++ .+|++++.|+.|++||+++++.. ..+..+..... ........
T Consensus 241 ~~~~-----~~~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 241 NSYI-----AEMPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp TCEE-----EEEECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSS
T ss_pred cceE-----EEecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCC
Confidence 1111 1125899999999999 88 99999999999999999987643 34433321100 00000011
Q ss_pred cceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
..+..++|+|++++ ++ .|+.|++||+.+ ++++..+.++..... +..++|+|++++|++|+ ||
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~-------------~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGI-------------ISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSC-------------CCEEEECTTSSEEEEEE-TT
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCC-CceeeeecCCCCCce-------------EEEEEEecCccEEEEec-CC
Confidence 34555677777776 44 569999999997 888888887432110 23679999999999997 99
Q ss_pred eEEEEecCC
Q 011257 421 LFRVFGCSE 429 (490)
Q Consensus 421 ~i~vw~~~~ 429 (490)
.|++||+++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999874
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.2e-36 Score=279.37 Aligned_cols=287 Identities=14% Similarity=0.242 Sum_probs=224.9
Q ss_pred ccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc--ccCCcccceee
Q 011257 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDYLK 107 (490)
Q Consensus 30 ~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~h~~~~~~~~ 107 (490)
....|.+.|++++|+|++++|++++ ||.|++||+.++... .....+ .+|.
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~--------------------~~~~~~~~~~~~------- 97 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--------------------SPVSQLDCLNRD------- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--------------------SCSEEEECSCTT-------
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce--------------------eeeecccccCCC-------
Confidence 3457999999999999999999999 999999999876532 011112 2566
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..|.+++|+| ++.++++++.|+.|++||+.+++.........+. .. ...++|+|+++
T Consensus 98 -----~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~------~~-------i~~~~~~~~~~--- 154 (337)
T 1gxr_A 98 -----NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA------PA-------CYALAISPDSK--- 154 (337)
T ss_dssp -----SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSS------SC-------EEEEEECTTSS---
T ss_pred -----CcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCC------Cc-------eEEEEECCCCC---
Confidence 7899999997 6679999999999999999988743333332211 11 22788999988
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
++++++.++.|++||+ .. .+....+ ..|...+.+++|+|++++|+++ .|+.|++||++....
T Consensus 155 ---------~l~~~~~dg~v~~~d~-~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 155 ---------VCFSCCSDGNIAVWDL-HN------QTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp ---------EEEEEETTSCEEEEET-TT------TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ---------EEEEEeCCCcEEEEeC-CC------Cceeeee-ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence 8999999999999992 21 2233333 6788999999999999999999 899999999985443
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
... ..+...+.+++|+|++ .+|++++.|+.|++||+++++. ..+.. |...|.+
T Consensus 218 -~~~--------~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-----~~~~~------------~~~~v~~ 270 (337)
T 1gxr_A 218 -LQQ--------HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-----YQLHL------------HESCVLS 270 (337)
T ss_dssp -EEE--------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-----EEECC------------CSSCEEE
T ss_pred -Eee--------ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-----EEEcC------------CccceeE
Confidence 322 2367789999999999 9999999999999999998652 23333 3478999
Q ss_pred EEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 347 l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
++|+|++++|++++ |+.|++||+.+ ++.+... .|... |.+++|+|++++|++++.||.|++|
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~-~~~~~~~-~~~~~---------------v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQS-KESSS---------------VLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECSSC---------------EEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCC-CeEEEEe-cCCCc---------------EEEEEECCCCCEEEEecCCCeEEEE
Confidence 99999999999975 69999999996 6665433 23322 5699999999999999999999999
Q ss_pred ecC
Q 011257 426 GCS 428 (490)
Q Consensus 426 ~~~ 428 (490)
++.
T Consensus 334 ~~~ 336 (337)
T 1gxr_A 334 EVI 336 (337)
T ss_dssp EEE
T ss_pred EEe
Confidence 973
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-36 Score=289.08 Aligned_cols=332 Identities=10% Similarity=0.062 Sum_probs=230.2
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+| ++||+|+.||.|++||+.+++.. ........+.+|.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------- 62 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------- 62 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence 347999999999999 79999999999999999876521 0122345567787
Q ss_pred eccceeEEEEeec--CCC---cEEEEEeCcCeEEEEEccCCeE-----EEEeeeccCCCcCCCCCCccccccccCceEEe
Q 011257 111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (490)
Q Consensus 111 ~~~~V~~v~~~p~--~~~---~~l~~~~~dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 180 (490)
..|++++|+|+ .++ .+|++++.||.|++||+.+++. ......+.... .. ....+++|+
T Consensus 63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~v~~~~~~ 130 (397)
T 1sq9_A 63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM---KK-------HSFWALKWG 130 (397)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG---GG-------SCEEEEEEE
T ss_pred --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc---CC-------CcEEEEEEe
Confidence 88999999984 126 7999999999999999988763 22222210000 00 122388999
Q ss_pred ----ccCCccccccccCCCCc-cccCCCCCcEEEeeeecc-----cccccccceeeeec------cccccceeEEEecCC
Q 011257 181 ----ANGGCGERNFGCASNDS-SFPPGGVSSLRLPVVVTS-----QETNLVAGCRRIYA------HAHDYHINSISNNSD 244 (490)
Q Consensus 181 ----~~g~~~~~~~~~~~~~~-l~~~~~~g~v~iw~~~~~-----~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~ 244 (490)
|+++ + +++++.++.|++||+... ..... ......+. ..|...|.+++|+|+
T Consensus 131 ~~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 197 (397)
T 1sq9_A 131 ASNDRLLS------------HRLVATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISER 197 (397)
T ss_dssp CCC----C------------EEEEEEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTT
T ss_pred eccCCCCc------------eEEEEEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCC
Confidence 8888 7 999999999999994330 11111 00000221 457889999999999
Q ss_pred CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCC---C---CCceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCC
Q 011257 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQ 314 (490)
Q Consensus 245 ~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~ 314 (490)
+ +|+++ .|+.|++||+++.. .... +.. | ...|.+++|+|++ .+|++++.| |.|++||+++
T Consensus 198 ~-~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 198 G-LIATGFNNGTVQISELSTLR-PLYN-------FESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp S-EEEEECTTSEEEEEETTTTE-EEEE-------EECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTT
T ss_pred c-eEEEEeCCCcEEEEECCCCc-eeEE-------EeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCC
Confidence 9 99998 89999999998543 3332 344 7 8999999999999 999999999 9999999998
Q ss_pred ccccccccceeccccCCCc-cccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeee------eecccc
Q 011257 315 SALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ------VHEHLR 386 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~------~~~~~~ 386 (490)
++. +..+.....+.. ......|...|.+++|+|++++|++++ |+.|++||+++ ++++..+. .|....
T Consensus 268 ~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 268 GER----IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp CCE----EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGC
T ss_pred Ccc----cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhh
Confidence 764 244443100000 000011458899999999999999975 69999999997 88888887 441000
Q ss_pred ccccccccCCCccceeeEEEcCCC----------CEEEEeecCCeEEEEecCCCc
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDG----------GRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~----------~~l~s~~~dg~i~vw~~~~~~ 431 (490)
..............|.+++|+|++ ++|++++.||.|++|++++|+
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 000000000001236799999998 799999999999999998774
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-37 Score=332.76 Aligned_cols=390 Identities=13% Similarity=0.146 Sum_probs=279.8
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccc--
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR-- 91 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~-- 91 (490)
...|+.... + .......|.+.|++++|+|+|++||+|+.||.|++||+.+++.... ...+...+.++.|+|+..
T Consensus 639 i~vw~~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 639 LQVFKAETG--E-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT-YDEHSEQVNCCHFTNKSNHL 714 (1249)
T ss_dssp EEEEETTTC--C-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSSCC
T ss_pred EEEEECCCC--C-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE-EcCCCCcEEEEEEecCCCce
Confidence 445766542 1 1222346999999999999999999999999999999998775422 234566778888888432
Q ss_pred ccccccc-CCc------ccceeeee-eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCc---
Q 011257 92 YKTEFQS-HEP------EFDYLKSL-EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK--- 160 (490)
Q Consensus 92 ~~~~~~~-h~~------~~~~~~~~-~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~--- 160 (490)
++..-.. ..- ....+..+ .|.+.|++++|+| ++.++++++.||+|++||+.+++.............
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 792 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC
Confidence 2211100 000 00112222 3558899999997 667999999999999999998876554432210000
Q ss_pred --CCCCCCcc-----------------------------------ccccccCceEEeccCCccccccccCCCCccccCCC
Q 011257 161 --AAGNGPIF-----------------------------------GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (490)
Q Consensus 161 --~~~~~~~~-----------------------------------~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~ 203 (490)
......+. ........++|+|++. ++++++.
T Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~------------~l~~~~~ 860 (1249)
T 3sfz_A 793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH------------LAVIALS 860 (1249)
T ss_dssp ---CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT------------EEEEECS
T ss_pred ccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC------------EEEEEeC
Confidence 00000000 0011112445555555 8999999
Q ss_pred CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC-----------------
Q 011257 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN----------------- 265 (490)
Q Consensus 204 ~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~----------------- 265 (490)
++.|++|++ . .......+ .+|...|.+++|+|+++.|+++ .|+.|++|++....
T Consensus 861 dg~v~vwd~-~------~~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 861 QYCVELWNI-D------SRLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp SSCEEEEET-T------TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred CCeEEEEEc-C------CCceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 999999992 2 12233333 7899999999999999999998 89999999964210
Q ss_pred --------------------------------------------------ceeeeeecCC----CccCCCCCceEEEEEc
Q 011257 266 --------------------------------------------------QSFNIVDVKP----ANMEDLTEVITSAEFH 291 (490)
Q Consensus 266 --------------------------------------------------~~~~~~~~~~----~~~~~~~~~v~~~~~~ 291 (490)
..+.+++... ..+.+|...|.+++|+
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s 1012 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT 1012 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEEC
T ss_pred CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEEC
Confidence 0011111111 1345788999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 292 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 292 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
|++ ++|++++.||.|++||+.+++.. .+. .|...|.+++|+|++.+++.+.|+.|++||+.+
T Consensus 1013 ~dg-~~l~s~~~dg~i~vwd~~~~~~~-----~~~------------~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1013 ADG-KTLISSSEDSVIQVWNWQTGDYV-----FLQ------------AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp SSS-SCEEEECSSSBEEEEETTTTEEE-----CCB------------CCSSCEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred CCC-CEEEEEcCCCEEEEEECCCCceE-----EEe------------cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence 999 99999999999999999987532 222 244789999999988776667789999999997
Q ss_pred CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
++.+..+.+|... |++++|+|++++|++++.||.|++||+.+++. +..+.+|..+|++++|+|
T Consensus 1075 -~~~~~~~~~~~~~---------------v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1075 -GRIERDFTCHQGT---------------VLSCAISSDATKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp -TCCCEEEECCSSC---------------CCCEEECSSSSSCEEECCSSCCCEECSSSSSC-SBCCCCCSSCEEEEEECS
T ss_pred -CceeEEEcccCCc---------------EEEEEECCCCCEEEEEcCCCcEEEEECCCcce-eeeeccCCCcEEEEEECC
Confidence 8888889888765 45999999999999999999999999999987 688999999999999999
Q ss_pred CCCCCCCCccCcc
Q 011257 452 SRPSRPLGSLSGV 464 (490)
Q Consensus 452 ~~~~~~~~~~~~~ 464 (490)
++...+.++.++.
T Consensus 1138 dg~~lat~~~dg~ 1150 (1249)
T 3sfz_A 1138 DGILLATGDDNGE 1150 (1249)
T ss_dssp SSSEEEEEETTSC
T ss_pred CCCEEEEEeCCCE
Confidence 9998877765543
No 44
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-37 Score=319.01 Aligned_cols=393 Identities=12% Similarity=0.035 Sum_probs=244.6
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCC-ccccee----
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE-PEFDYL---- 106 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~-~~~~~~---- 106 (490)
..|..+|++++|+| |++||+++.|++|+|||+.+++.+..+. +...+.+++|+|+..++..-.... -.+..+
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 46888999999999 8899999999999999999876543332 345678899999876544311100 000000
Q ss_pred -------------ee-eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCC--Ccccc
Q 011257 107 -------------KS-LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG--PIFGS 170 (490)
Q Consensus 107 -------------~~-~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 170 (490)
.. ..|.+.|++++|+|. ++..+++|+.||.| +||+.+++....+..+.......... .....
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred cccceeccccccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 00 124578999999973 34689999999999 99999998776655431110000000 00000
Q ss_pred -ccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeee-cc-----------cccccee
Q 011257 171 -HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AH-----------AHDYHIN 237 (490)
Q Consensus 171 -~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~-~~-----------~~~~~v~ 237 (490)
.....+++|+|+|+ +|++++.|+.|++||+...... .. +..... .. .|...|.
T Consensus 210 h~~~V~~v~fspdg~------------~lasgs~Dg~i~lWd~~~g~~~-~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~ 275 (902)
T 2oaj_A 210 RTPKVIQSLYHPNSL------------HIITIHEDNSLVFWDANSGHMI-MA-RTVFETEINVPQPDYIRDSSTNAAKIS 275 (902)
T ss_dssp BCCCEEEEEECTTSS------------EEEEEETTCCEEEEETTTCCEE-EE-ECSSCSCTTSCCTTCCCCCSSCCCEEE
T ss_pred cCCCeEEEEEcCCCC------------EEEEEECCCeEEEEECCCCcEE-EE-EeecccccCCCCCcCCCCCccccCCee
Confidence 01234899999999 8999999999999994221110 00 000000 00 1233456
Q ss_pred EEEec----CCC-CEEEEe-------------------------------------------------------------
Q 011257 238 SISNN----SDG-ETFISA------------------------------------------------------------- 251 (490)
Q Consensus 238 ~i~~~----~~~-~~l~~~------------------------------------------------------------- 251 (490)
+++|+ |++ .+|++|
T Consensus 276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s 355 (902)
T 2oaj_A 276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS 355 (902)
T ss_dssp EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence 66663 322 234443
Q ss_pred ----------------cCCcEEEEEcCCCCceeeee---------------------------------ecCCCccCCCC
Q 011257 252 ----------------DDLRINLWNLEISNQSFNIV---------------------------------DVKPANMEDLT 282 (490)
Q Consensus 252 ----------------~d~~i~~wd~~~~~~~~~~~---------------------------------~~~~~~~~~~~ 282 (490)
.|+.|++||+.++....... ......+.+|.
T Consensus 356 p~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~ 435 (902)
T 2oaj_A 356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGV 435 (902)
T ss_dssp SHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSB
T ss_pred CCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCc
Confidence 33444444432211110000 00001133444
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C
Q 011257 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y 361 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d 361 (490)
..+..++|+|++ ++|++|+.|++|++||+.++.... ...+.... .+....+|...|.+++|+|||++||+|+ |
T Consensus 436 ~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~LAsgs~D 509 (902)
T 2oaj_A 436 RTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLELAVSIET 509 (902)
T ss_dssp CCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred CCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence 455556668888 999999999999999999874211 11111000 0000125668999999999999999985 6
Q ss_pred CeEEEEeccCCCC---------------------------------------------ceeeeeeeccccccccccccCC
Q 011257 362 MTLKLWDINMDSG---------------------------------------------PVATFQVHEHLRPKLCDLYEND 396 (490)
Q Consensus 362 ~~i~iwd~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 396 (490)
|+|+|||+.. ++ ++..+.+|...
T Consensus 510 gtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~----------- 577 (902)
T 2oaj_A 510 GDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK----------- 577 (902)
T ss_dssp SCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS-----------
T ss_pred cEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc-----------
Confidence 9999999985 32 13334444433
Q ss_pred CccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceee----eEec-cCCCceEEEEEc-----cCC---CCCCCCccCc
Q 011257 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRPLGSLSG 463 (490)
Q Consensus 397 ~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~-~~~~~v~~~~~s-----p~~---~~~~~~~~~~ 463 (490)
|++++||||| +||+|+.|++|+|||++++.... ..+. +|.+.|++++|+ ||| +..+.++.+.
T Consensus 578 ----V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 578 ----TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp ----EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred ----EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 6799999999 99999999999999998775421 1333 899999999999 886 5666565555
Q ss_pred cee
Q 011257 464 VVR 466 (490)
Q Consensus 464 ~~~ 466 (490)
..+
T Consensus 653 tv~ 655 (902)
T 2oaj_A 653 EVI 655 (902)
T ss_dssp EEE
T ss_pred cEE
Confidence 433
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-36 Score=291.23 Aligned_cols=310 Identities=15% Similarity=0.176 Sum_probs=232.8
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
+.+++++|+|+|++|++|+.||.|++||+.+.+.. ..+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence 44568999999999999999999999998766522 2334443 23
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
....|+| ++.+|++++.||.|++||+.+++.......+ .+.+ .+++|+|+++
T Consensus 101 ~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h--------~~~v-------~~~~~~~~~~----------- 152 (420)
T 3vl1_A 101 AVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQREIDQAH--------VSEI-------TKLKFFPSGE----------- 152 (420)
T ss_dssp EEEEECS--SSCEEEEEETTSCEEEECTTSCEEEEETTSS--------SSCE-------EEEEECTTSS-----------
T ss_pred EEEEEec--CCCEEEEEECCCCEEEEeCCCcceeeecccc--------cCcc-------EEEEECCCCC-----------
Confidence 3345654 6779999999999999999988766543222 1222 3889999998
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
+|++++.|+.|++||+ .. .+....+ .+|...|.+++|+|++++|+++ .|+.|++||+++.. ....+..
T Consensus 153 -~l~s~s~d~~i~iwd~-~~------~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~- 221 (420)
T 3vl1_A 153 -ALISSSQDMQLKIWSV-KD------GSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNR- 221 (420)
T ss_dssp -EEEEEETTSEEEEEET-TT------CCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECB-
T ss_pred -EEEEEeCCCeEEEEeC-CC------CcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeec-
Confidence 8999999999999993 21 2233333 6899999999999999999999 89999999998543 3333211
Q ss_pred CCccCCCC---------------------CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc
Q 011257 275 PANMEDLT---------------------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (490)
Q Consensus 275 ~~~~~~~~---------------------~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
...+. ..+.+++|+|++ .+|++|+.||.|++||+++++.. ..+.
T Consensus 222 ---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~------- 286 (420)
T 3vl1_A 222 ---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQT----IQLP------- 286 (420)
T ss_dssp ---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEE----EEEC-------
T ss_pred ---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCcee----EEcc-------
Confidence 11233 444555567888 89999999999999999987643 2222
Q ss_pred cccccccccceEEEEECCCCC-EEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 334 RSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 334 ~~~~~~h~~~i~~l~~sp~g~-~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
..|...|.+++|+|+++ +|++|+ ||.|++||+++...++..+..|.... |.++ +.++++
T Consensus 287 ----~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~ 347 (420)
T 3vl1_A 287 ----SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGA 347 (420)
T ss_dssp ----CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTE
T ss_pred ----cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCC
Confidence 12347899999999998 888875 69999999997445577887754321 3456 455889
Q ss_pred EEEEeecCCeEEEEecCCCce--------eeeEeccCCCceEEEEEccCCC
Q 011257 412 RVATGSYSNLFRVFGCSEGSA--------ESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
+|++++.||.|++|++..++. ....+..|...|.+++|+|++.
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 999999999999999987421 1245678889999999999988
No 46
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-36 Score=282.07 Aligned_cols=317 Identities=10% Similarity=0.100 Sum_probs=240.1
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|.++|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 467899999999999999998877766555432211 112233566
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEe-eeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF-DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|++++|+| ++.++++++ ||.|++||+.++...... ..... ... ....+++|+|+++
T Consensus 52 ~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~----~~~-------~~v~~~~~~~~~~------- 110 (337)
T 1gxr_A 52 EVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCL----NRD-------NYIRSCKLLPDGC------- 110 (337)
T ss_dssp SCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECS----CTT-------SBEEEEEECTTSS-------
T ss_pred CceEEEEEec--CCcEEEEcC-CCeEEEEECCCCCceeeeeccccc----CCC-------CcEEEEEEcCCCC-------
Confidence 8899999996 667888888 999999999876421111 11000 011 1223789999998
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
++++++.++.|++||+ .... ...... ...|...+.+++|+|++++|+++ .|+.|++||+++.. ...
T Consensus 111 -----~l~~~~~d~~i~~~d~-~~~~----~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~- 177 (337)
T 1gxr_A 111 -----TLIVGGEASTLSIWDL-AAPT----PRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVR- 177 (337)
T ss_dssp -----EEEEEESSSEEEEEEC-CCC------EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEE-
T ss_pred -----EEEEEcCCCcEEEEEC-CCCC----cceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eee-
Confidence 8999999999999993 2211 111222 36788899999999999999999 89999999998543 333
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.+..|...+.+++|+|++ ..|++++.||.|++||+++++.. ..+. |...+.+++|+
T Consensus 178 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~~-------------~~~~v~~~~~s 233 (337)
T 1gxr_A 178 ------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQHD-------------FTSQIFSLGYC 233 (337)
T ss_dssp ------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEEE-------------CSSCEEEEEEC
T ss_pred ------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eeec-------------CCCceEEEEEC
Confidence 346789999999999999 99999999999999999987642 2222 22679999999
Q ss_pred CCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 351 p~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
|++++|++++ ++.|++||++. .+ ...+..|... |.+++|+|++++|++++.||.|++|++.+
T Consensus 234 ~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 234 PTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 9999999985 69999999985 44 3445555443 56999999999999999999999999999
Q ss_pred CceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
++.. ....|...+.+++|+|+++....++.
T Consensus 297 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 297 GASI--FQSKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp CCEE--EEEECSSCEEEEEECTTSCEEEEEET
T ss_pred CeEE--EEecCCCcEEEEEECCCCCEEEEecC
Confidence 8773 44567889999999999986655443
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.9e-36 Score=286.79 Aligned_cols=297 Identities=16% Similarity=0.246 Sum_probs=225.4
Q ss_pred cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecccee
Q 011257 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 116 (490)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 4577999986 4888875 899999999987632 122345666 7799
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
+|+|+| +|.+|++|+.||+|++||+.+++.......+.. . ..+++.++.
T Consensus 152 sv~fsp--dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~--------~---------v~~~s~~~~------------ 200 (420)
T 4gga_A 152 SVAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA--------R---------VGSLSWNSY------------ 200 (420)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--------C---------EEEEEEETT------------
T ss_pred EEEECC--CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC--------c---------eEEEeeCCC------------
Confidence 999996 678999999999999999999987665543321 1 234555666
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
++++++.|+.+++||+ ... ...... +.+|...+..+.++|+++.++++ .|+.+++|+..........+
T Consensus 201 ~l~sgs~d~~i~~~d~-~~~-----~~~~~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~---- 269 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDV-RVA-----EHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 269 (420)
T ss_dssp EEEEEETTSEEEEEET-TSS-----SCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----
T ss_pred EEEEEeCCCceeEeee-ccc-----ceeeEE-ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----
Confidence 8999999999999992 211 112223 37899999999999999999999 89999999998554322111
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.....|...|.+++|+|.+..+++++ +.|++|++||+.+++.. ..+..+ ..+.++.|+|++
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~~-------------~~v~~~~~~~~~ 332 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDAH-------------SQVCSILWSPHY 332 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEECS-------------SCEEEEEEETTT
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeeccc-------------cceeeeeecCCC
Confidence 13467889999999999886777764 47999999999998643 344433 568999999999
Q ss_pred CEEEEE---cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 354 RHILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 354 ~~l~sg---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+.++++ .|+.|+|||+.+ ++++..+.+|... |++++|+|||++|++|+.||+|+|||+...
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999875 369999999997 8999999999876 679999999999999999999999999876
Q ss_pred ceeeeEeccCCCce
Q 011257 431 SAESTTLEASKNPM 444 (490)
Q Consensus 431 ~~~~~~~~~~~~~v 444 (490)
.. ....+.+...+
T Consensus 397 ~~-~~~~~~~~~~~ 409 (420)
T 4gga_A 397 DP-ARRREREKASA 409 (420)
T ss_dssp SC-C----------
T ss_pred Cc-cchhhhccCCc
Confidence 54 34444444333
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.5e-37 Score=281.47 Aligned_cols=257 Identities=15% Similarity=0.199 Sum_probs=195.6
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ..+..+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------~~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------ILIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------EEEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------EEEEEEcCCC----------
Confidence 347999999999999999999999999999999976531 1245678898
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++++|+|..++.+|++++.|++|++||+.+++.....
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999986444679999999999999998765311100
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
. +.+|...|.+++|+|+ +.+|++| .|+.|++||++.....
T Consensus 98 ------------------------------------~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 98 ------------------------------------E-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp ------------------------------------E-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred ------------------------------------E-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 0 2567789999999998 7899999 8999999999854322
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCC----------------CcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
... ..+.+|...+.+++|+|+. ..+|++|+.|++|++||++..... ..+..+
T Consensus 141 -~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~~~l------ 208 (316)
T 3bg1_A 141 -EVK----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEEQKL------ 208 (316)
T ss_dssp -EEC----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEEECC------
T ss_pred -cee----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-ceeeec------
Confidence 110 1457889999999999972 168999999999999999754210 112333
Q ss_pred CccccccccccceEEEEECCCC----CEEEEEc-CCeEEEEeccCCC---CceeeeeeeccccccccccccCCCccceee
Q 011257 332 GTRSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g----~~l~sg~-d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
.+|...|.+++|+|++ ++|++++ |++|++||+.... .....+..|... |++
T Consensus 209 ------~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~~ 267 (316)
T 3bg1_A 209 ------EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VWH 267 (316)
T ss_dssp ------BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EEE
T ss_pred ------ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EEE
Confidence 3455899999999986 7899874 6999999987511 122334444433 669
Q ss_pred EEEcCCCCEEEEeecCCeEEEEecC
Q 011257 404 CCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
++|+|++++||+++.||.|++|+..
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999999999999999986
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-36 Score=278.27 Aligned_cols=297 Identities=14% Similarity=0.179 Sum_probs=206.9
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
.+..+.+|. +.|.+++|+| + +|++++.|++|++||+..+........... .+.+.+.
T Consensus 6 ~~~~~~~h~------------~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~----~h~~~v~--- 62 (330)
T 2hes_X 6 LIKSLKLYK------------EKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLIDVLDET----AHKKAIR--- 62 (330)
T ss_dssp EEEEEECCS------------SCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEEEECTT----CCCSCEE---
T ss_pred cceeeccCC------------CceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEEEEecC----CccCCEE---
Confidence 456678888 8899999985 3 899999999999999987532222221100 0122233
Q ss_pred cccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
+++|+|+++ +|++++.|++|++|++...........+...+ .+|...|.+++|+|++++|++|
T Consensus 63 ----~v~~sp~~~------------~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 63 ----SVAWRPHTS------------LLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp ----EEEECTTSS------------EEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEE
T ss_pred ----EEEECCCCC------------EEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEE
Confidence 889999998 89999999999999932111111112233333 7899999999999999999999
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.|+.|++||++........+ ..+.+|...|.+++|+|++ .+|++|+.|++|++||..++.. ..+..+.+
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~--~~~~~~~~--- 195 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW--ECVAVLNG--- 195 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE--EEEEEECC---
T ss_pred eCCCEEEEEeccCCCCCeEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe--eEEEEccC---
Confidence 89999999995433222111 1357899999999999999 9999999999999999876521 11344444
Q ss_pred CCccccccccccceEEEEECCC--CCEEEEE-cCCeEEEEeccCCC-------Cceeeeee-eccccccccccccCCCcc
Q 011257 331 PGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDS-------GPVATFQV-HEHLRPKLCDLYENDSIF 399 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~--g~~l~sg-~d~~i~iwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 399 (490)
|...|.+++|+|+ +.+|++| .|++|++||+.... .....+.. |..
T Consensus 196 ---------h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~--------------- 251 (330)
T 2hes_X 196 ---------HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR--------------- 251 (330)
T ss_dssp ---------CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---------------
T ss_pred ---------CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---------------
Confidence 4488999999998 7788887 46999999997411 11222222 222
Q ss_pred ceeeEEEcCCCCEEEEeecCCeEEEEecCCCce--eeeEeccCCC-ceEEEEEcc--CCCCCCCCccCc
Q 011257 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--ESTTLEASKN-PMRRQVQTP--SRPSRPLGSLSG 463 (490)
Q Consensus 400 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~-~v~~~~~sp--~~~~~~~~~~~~ 463 (490)
.|.+++|++++ +|++++.||.|++|+..+++. ....+.+|.. .|.+++|+| ++...+.++.++
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 26699999665 899999999999999988742 2233467876 899999999 566555544443
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-37 Score=292.72 Aligned_cols=255 Identities=11% Similarity=0.102 Sum_probs=187.3
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
|.++|++++|+|+|++||+|+.|+.|+|||+.++. .+....+.+|. .
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---------------------~~~~~~~~~h~------------~ 56 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---------------------WKHARTFSDHD------------K 56 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---------------------EEECCCBCCCS------------S
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---------------------eEEEEEEecCC------------c
Confidence 56799999999999999999999999999998652 01346678888 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.|++++|+| ++.+|++++.|++|++||+.+++ .........+ .+.+ .+++|+|+++
T Consensus 57 ~v~~~~~s~--~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~------~~~v-------~~~~~~~~~~-------- 113 (377)
T 3dwl_C 57 IVTCVDWAP--KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL------NRAA-------TFVRWSPNED-------- 113 (377)
T ss_dssp CEEEEEECT--TTCCEEEEETTSSEEEC------CCCCEEECCCC------SSCE-------EEEECCTTSS--------
T ss_pred eEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc------CCce-------EEEEECCCCC--------
Confidence 899999997 56799999999999999999876 1111111111 1122 3789999998
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc-----
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ----- 266 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~----- 266 (490)
++++++.|+.|++||+.... .....+.+...|...|.+++|+|++++|+++ .|+.|++||+.....
T Consensus 114 ----~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 114 ----KFAVGSGARVISVCYFEQEN----DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ----CCEEEESSSCEEECCC---------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred ----EEEEEecCCeEEEEEECCcc----cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 89999999999999932211 1112333323389999999999999999999 899999999863221
Q ss_pred ---------eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccc
Q 011257 267 ---------SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (490)
Q Consensus 267 ---------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (490)
..... ..+ +|...|.+++|+|++ ++|++++.||.|++||+++++.....+..+..
T Consensus 186 ~~~~~~~~~~~~~~----~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------- 249 (377)
T 3dwl_C 186 ASVWGSRLPFNTVC----AEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKL---------- 249 (377)
T ss_dssp SCSSCSCCCEEEEE----ECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEEC----------
T ss_pred ccccccccchhhhh----hcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecC----------
Confidence 11111 134 899999999999999 89999999999999999987642111234444
Q ss_pred cccccceEEEEECCCCCEEEEEcCCeEEEEecc
Q 011257 338 TEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 338 ~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
|...|.+++|+|++++|++|+++.+.+|+..
T Consensus 250 --~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 250 --SQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp --SSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred --CCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 4478999999999999999988666688776
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=280.40 Aligned_cols=319 Identities=13% Similarity=0.163 Sum_probs=229.3
Q ss_pred cccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...|.+.|++++|+| ++++||+|+.||.|++||+.++........... .........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV----------CSIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE----------EEECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc----------ccccccccccCC---------
Confidence 446999999999999 999999999999999999988764311100000 000001123466
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|++++|+| .++.+|++++.||.|++||+.+++.......... ...+.+++.+.
T Consensus 100 ---~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~----- 154 (408)
T 4a11_B 100 ---YSVETVQWYP-HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----------------VYSHHMSPVST----- 154 (408)
T ss_dssp ---SCEEEEEECT-TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC----------------EEEEEECSSCS-----
T ss_pred ---CcEEEEEEcc-CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc----------------eeeeEeecCCC-----
Confidence 8899999997 2456899999999999999999987766554321 11566666433
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEEcCCCCce
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
...++++++.++.|++||+ .. ......+ .+|...|.+++|+|+++ +|+++ .|+.|++||++.....
T Consensus 155 ----~~~~~~~~~~~~~v~~~d~-~~------~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 155 ----KHCLVAVGTRGPKVQLCDL-KS------GSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp ----SCCEEEEEESSSSEEEEES-SS------SCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred ----CCcEEEEEcCCCeEEEEeC-CC------cceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 1227899999999999993 21 2223333 68889999999999998 47788 8999999999866544
Q ss_pred eeeeec--------CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 268 FNIVDV--------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 268 ~~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
...+.. .......|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+..+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~------ 291 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENT----LVNYGKVCNNS------ 291 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBC----CCCCCCCCCCC------
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccc----eeccccccccc------
Confidence 433211 011236789999999999999 99999999999999999987643 11111110000
Q ss_pred cccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 340 IIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
.......+...+...+++++.++.|++||+.+ ++++..+.+|... |.+++|+|++++|++++.|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKT---------------VDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTT-CCEEEEECCCSSC---------------EEEEEEETTTTEEEEEETT
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcC-CcceeeeccCCCe---------------EEEEEEcCCCCEEEEECCC
Confidence 00122233334455666667789999999997 8999999888765 5699999999999999999
Q ss_pred CeEEEEecCCCce
Q 011257 420 NLFRVFGCSEGSA 432 (490)
Q Consensus 420 g~i~vw~~~~~~~ 432 (490)
|.|++|++.+++.
T Consensus 356 g~i~iw~~~~~~~ 368 (408)
T 4a11_B 356 CNILAWVPSLYEP 368 (408)
T ss_dssp SCEEEEEECC---
T ss_pred CeEEEEeCCCCCc
Confidence 9999999998876
No 52
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.9e-36 Score=274.18 Aligned_cols=284 Identities=15% Similarity=0.222 Sum_probs=219.0
Q ss_pred ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE---EEEeeeccCCCcCCCCCCc
Q 011257 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~ 167 (490)
.+..++.+|. +.|++++|+|. ++.+|++++.|++|++|++..... .....+..+ ...+
T Consensus 8 ~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h------~~~v 68 (319)
T 3frx_A 8 VLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH------SHIV 68 (319)
T ss_dssp EEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC------SSCE
T ss_pred EEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEEeCC------cccE
Confidence 3456788998 88999999973 346999999999999999874321 112222221 1122
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
..++|+|+|+ ++++++.|++|++||+ . ..++...+ .+|...|.+++|+|++.+
T Consensus 69 -------~~~~~s~dg~------------~l~s~s~D~~v~~wd~-~------~~~~~~~~-~~h~~~v~~~~~~~~~~~ 121 (319)
T 3frx_A 69 -------QDCTLTADGA------------YALSASWDKTLRLWDV-A------TGETYQRF-VGHKSDVMSVDIDKKASM 121 (319)
T ss_dssp -------EEEEECTTSS------------EEEEEETTSEEEEEET-T------TTEEEEEE-ECCSSCEEEEEECTTSCE
T ss_pred -------EEEEECCCCC------------EEEEEeCCCEEEEEEC-C------CCCeeEEE-ccCCCcEEEEEEcCCCCE
Confidence 2788999999 8999999999999992 2 22334444 789999999999999999
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCccccccc
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-----CNMLAYSSSKGSIRLIDMRQSALCDTH 321 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (490)
|++| .|+.|++||++ .. ... .+.+|...|.+++|+|.. ...|++++.|+.|++||+++.+.
T Consensus 122 l~s~s~D~~i~vwd~~-~~-~~~-------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---- 188 (319)
T 3frx_A 122 IISGSRDKTIKVWTIK-GQ-CLA-------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---- 188 (319)
T ss_dssp EEEEETTSCEEEEETT-SC-EEE-------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE----
T ss_pred EEEEeCCCeEEEEECC-CC-eEE-------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh----
Confidence 9999 89999999997 33 222 357899999999999953 14899999999999999988653
Q ss_pred cceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccc
Q 011257 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
...+.+ |...|.+++|+|+|++|++|+ |+.|++||+.+ ++++..+..+..
T Consensus 189 ~~~~~~------------h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~---------------- 239 (319)
T 3frx_A 189 EADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAA-KKAMYTLSAQDE---------------- 239 (319)
T ss_dssp EEEECC------------CCSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECCSC----------------
T ss_pred heeecC------------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCc----------------
Confidence 234444 448899999999999999975 69999999997 777777765432
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEe--------ccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~--------~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
|.+++|+|++.+|++++.+ .+++|++..+.. ...+ ..|...+.+++|+|||+..+.++.++.
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL-VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTEEE-EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee-eeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence 4699999999999988765 599999987654 3333 245678999999999998876665543
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-35 Score=320.62 Aligned_cols=338 Identities=15% Similarity=0.201 Sum_probs=260.1
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|+|++||+|+.||.|++||+.+++ .+..+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----------------------~~~~~~~h~---------- 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----------------------KLLDIKAHE---------- 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEeccCC----------
Confidence 34799999999999999999999999999999998776 246678888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++++|+| ++.++++++.||+|++||+.+++.......+. +.+ .+++|+|++..
T Consensus 658 --~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--------~~v-------~~~~~~~~~~~----- 713 (1249)
T 3sfz_A 658 --DEVLCCAFSS--DDSYIATCSADKKVKIWDSATGKLVHTYDEHS--------EQV-------NCCHFTNKSNH----- 713 (1249)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECCS--------SCE-------EEEEECSSSSC-----
T ss_pred --CCEEEEEEec--CCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--------CcE-------EEEEEecCCCc-----
Confidence 8899999997 67799999999999999999988766554332 122 27889886542
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.++++++.|+.|++||+ . ...+...+ .+|...|.+++|+|++++|+++ .|+.|++||+........
T Consensus 714 -----~~l~sg~~d~~v~vwd~-~------~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 714 -----LLLATGSNDFFLKLWDL-N------QKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp -----CEEEEEETTSCEEEEET-T------SSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred -----eEEEEEeCCCeEEEEEC-C------Ccchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence 17889999999999992 2 22344444 7899999999999999999999 899999999975432211
Q ss_pred ee------------------------------------------ecCC-----CccCCCCCceEEEEEcCCCCcEEEEEe
Q 011257 270 IV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 270 ~~------------------------------------------~~~~-----~~~~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
.. +... ....+|...|.+++|+|++ .++++++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~ 859 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 859 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEEC
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEe
Confidence 10 0000 0012678889999999999 9999999
Q ss_pred CCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCce-----
Q 011257 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPV----- 376 (490)
Q Consensus 303 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~----- 376 (490)
.||.|++||+.++.. +..+.+ |...|.+++|+|+|++|++++ |+.|++||+.. ....
T Consensus 860 ~dg~v~vwd~~~~~~----~~~~~~------------h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~-~~~~~~~~~ 922 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLK----VADCRG------------HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVL 922 (1249)
T ss_dssp SSSCEEEEETTTTEE----EEEECC------------CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH-HHSCCSSSE
T ss_pred CCCeEEEEEcCCCce----eeecCC------------CccceEEEEECCCCCEEEEEeCCCeEEEEEccc-cceeeeecc
Confidence 999999999998754 244444 448899999999999999974 69999999763 1100
Q ss_pred ------------------------eeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 377 ------------------------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 377 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.......... .......+.+++|+|+++++++|+.||.|++|++.+++.
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI-------DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE-------EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred cceeeEEEcCCCcEEEEecCCcceEEEecCcceE-------EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence 0000000000 000012367999999999999999999999999999887
Q ss_pred eeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 433 ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 433 ~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
...+.+|...|++++|+|+++....++.++.
T Consensus 996 -~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 996 -FSSGVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp -EEECCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred -eeecccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 6888999999999999999998877765543
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-37 Score=291.73 Aligned_cols=329 Identities=9% Similarity=0.071 Sum_probs=234.9
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
....|++...- .........|...|++++|+|++++||+|+.||.|++||+.+.... .+.
T Consensus 46 ~v~iw~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------------~~~ 105 (416)
T 2pm9_A 46 SLELWSLLAAD-SEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-------------------INS 105 (416)
T ss_dssp CCEEEESSSGG-GCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC-------------------CCE
T ss_pred eEEEEEccCCC-CCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc-------------------ccc
Confidence 45668877521 1123345678999999999999999999999999999999863210 113
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe------EEEEeeeccCCCcCCCCCC
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGP 166 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~ 166 (490)
...+.+|. ..|++++|+|+ ++.+|++++.|+.|++||+.+++ ....... .....
T Consensus 106 ~~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~-- 165 (416)
T 2pm9_A 106 MARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-----SMSSV-- 165 (416)
T ss_dssp EEECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-----SCCSS--
T ss_pred hhhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCcccccccccccccc-----ccCCC--
Confidence 45677888 88999999973 25799999999999999998875 1111000 00011
Q ss_pred ccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeec-----cccccceeEEEe
Q 011257 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-----HAHDYHINSISN 241 (490)
Q Consensus 167 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~i~~ 241 (490)
....+++|+|++.. ++++++.|+.|++||+ .. .+....+. .+|...|.+++|
T Consensus 166 -----~~v~~~~~~~~~~~-----------~l~~~~~dg~v~iwd~-~~------~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 166 -----DEVISLAWNQSLAH-----------VFASAGSSNFASIWDL-KA------KKEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp -----CCCCEEEECSSCTT-----------EEEEESSSSCEEEEET-TT------TEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred -----CCeeEEEeCCCCCc-----------EEEEEcCCCCEEEEEC-CC------CCcceEEeccccccccCCceEEEEE
Confidence 22238899999432 7899999999999992 22 12222221 123788999999
Q ss_pred cCCC-CEEEEe-cCC---cEEEEEcCCCCceeeeeecCCCccC-CCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCC
Q 011257 242 NSDG-ETFISA-DDL---RINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 242 ~~~~-~~l~~~-~d~---~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
+|++ .+++++ .|+ .|++||++....... .+. +|...|.+++|+| ++ .+|++++.||.|++||+++
T Consensus 223 ~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQ-------TLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB-------CCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSS
T ss_pred CCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE-------EeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCC
Confidence 9997 578888 787 999999986544433 355 7999999999999 77 9999999999999999998
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCCC-CEEEEEc-CCeEEEEeccCCCCceeeeee-----------
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQV----------- 381 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g-~~l~sg~-d~~i~iwd~~~~~~~~~~~~~----------- 381 (490)
++. +..+..|. ..|.+++|+|++ .+|++++ |+.|++||+.. .........
T Consensus 295 ~~~----~~~~~~~~------------~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 295 AEQ----LSQFPARG------------NWCFKTKFAPEAPDLFACASFDNKIEVQTLQN-LTNTLDEQETETKQQESETD 357 (416)
T ss_dssp CCE----EEEEECSS------------SCCCCEEECTTCTTEEEECCSSSEEEEEESCC-CCCSSCC-------------
T ss_pred Ccc----ceeecCCC------------CceEEEEECCCCCCEEEEEecCCcEEEEEccC-CCCCcccccccccccCCccc
Confidence 754 34555443 789999999999 8999875 69999999986 333222111
Q ss_pred ---------eccccccccccccCC-CccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 382 ---------HEHLRPKLCDLYEND-SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 382 ---------~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
|......... .... ...++.+++|+|||++|++++.||.|+||++.+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1100000000 0000 1223568999999999999999999999999865
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=284.68 Aligned_cols=296 Identities=16% Similarity=0.234 Sum_probs=225.3
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
|.+.|++++|+|++++||+|+.||.|++||. +++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-----------------------eeeeccCCC------------c
Confidence 6889999999999999999999999999993 222 245677787 8
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|.+++|+| ++.+|++++.|+.|++||+.+++.............................++|+|++
T Consensus 151 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 218 (425)
T 1r5m_A 151 PIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD---------- 218 (425)
T ss_dssp CEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT----------
T ss_pred cEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC----------
Confidence 899999997 66799999999999999999988766554433211000000000000113367777765
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.+++++.++.|++||+ .. ......+ ..|...|.+++|+|++++|+++ .|+.|++||++..... .
T Consensus 219 ---~~~~~~~~g~i~~~d~-~~------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~--- 283 (425)
T 1r5m_A 219 ---KFVIPGPKGAIFVYQI-TE------KTPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-N--- 283 (425)
T ss_dssp ---EEEEECGGGCEEEEET-TC------SSCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-E---
T ss_pred ---EEEEEcCCCeEEEEEc-CC------Cceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-e---
Confidence 4788999999999992 22 1222333 6788999999999999999999 8999999999854433 2
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
.+..|...|.+++|+|++ .+++++.|+.|++||+++++. +..+..+. ..|.+++|+|+
T Consensus 284 ----~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~------------~~i~~~~~s~~ 341 (425)
T 1r5m_A 284 ----CFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL----LALSIVDG------------VPIFAGRISQD 341 (425)
T ss_dssp ----EECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE----EEEEECTT------------CCEEEEEECTT
T ss_pred ----EecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE----eEecccCC------------ccEEEEEEcCC
Confidence 346789999999999987 899999999999999998764 24444433 78999999999
Q ss_pred CCEEEEEc-CCeEEEEeccCCCC--------------------ceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 353 GRHILSRD-YMTLKLWDINMDSG--------------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 353 g~~l~sg~-d~~i~iwd~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
+++|++++ |+.|++||+.+ +. ++..+..|.... .|.+++|+|+++
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~s~~~~ 407 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND-------------YIFDLSWNCAGN 407 (425)
T ss_dssp SSEEEEEETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCC-------------CEEEEEECTTSS
T ss_pred CCEEEEEECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCC-------------ceEEEEccCCCc
Confidence 99999975 69999999986 44 555665553310 166999999999
Q ss_pred EEEEeecCCeEEEEecC
Q 011257 412 RVATGSYSNLFRVFGCS 428 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~ 428 (490)
+|++++.||.|++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999986
No 56
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.4e-35 Score=271.68 Aligned_cols=290 Identities=17% Similarity=0.229 Sum_probs=214.8
Q ss_pred cccccccccCCcccceeeeeeeccceeEEEE-----eecCCCcEEEEEeCcCeEEEEEccCCe-----EEEEeeeccCCC
Q 011257 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRW-----CQSANSALYLLSTNDKTIKLWKVQEKK-----VKKVFDWNVHPE 159 (490)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~-----~p~~~~~~l~~~~~dg~i~lwd~~~~~-----~~~~~~~~~~~~ 159 (490)
......+.+|. +.|++++| +| .++.+|++|+.|++|++||+...+ ......+..+
T Consensus 11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~-~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h-- 75 (343)
T 2xzm_R 11 VVKRGILEGHS------------DWVTSIVAGFSQKEN-EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH-- 75 (343)
T ss_dssp EEEEEEEECCS------------SCEEEEEECCCSSTT-CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC--
T ss_pred eeeeeeeccch------------hhhhheeeEEEeecC-CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC--
Confidence 34456788998 88999999 43 367899999999999999997542 1111112111
Q ss_pred cCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEE
Q 011257 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI 239 (490)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 239 (490)
...+ .+++|+|++. ++++++.|++|++||+ . ..++...+ .+|...|.++
T Consensus 76 ----~~~V-------~~~~~~~~~~------------~l~s~s~D~~v~lwd~-~------~~~~~~~~-~~h~~~v~~v 124 (343)
T 2xzm_R 76 ----NHFV-------SDLALSQENC------------FAISSSWDKTLRLWDL-R------TGTTYKRF-VGHQSEVYSV 124 (343)
T ss_dssp ----SSCE-------EEEEECSSTT------------EEEEEETTSEEEEEET-T------SSCEEEEE-ECCCSCEEEE
T ss_pred ----CCce-------EEEEECCCCC------------EEEEEcCCCcEEEEEC-C------CCcEEEEE-cCCCCcEEEE
Confidence 1122 2789999998 8999999999999992 2 12334444 7899999999
Q ss_pred EecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCC---------cEEEEEeCCCeEEE
Q 011257 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---------NMLAYSSSKGSIRL 309 (490)
Q Consensus 240 ~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---------~~l~~~~~dg~i~i 309 (490)
+|+|++++|+++ .|+.|++||+. ....... ....+|...|.+++|+|++. .+|++++.|+.|++
T Consensus 125 ~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 125 AFSPDNRQILSAGAEREIKLWNIL-GECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp EECSSTTEEEEEETTSCEEEEESS-SCEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEecc-CCceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence 999999999999 89999999997 3322221 13357899999999999862 58999999999999
Q ss_pred EeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccc
Q 011257 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (490)
||... +. ...+.. |...|.+++|+|+|++|++|+ |+.|++||+.....+...+.. ...
T Consensus 199 wd~~~-~~----~~~~~~------------h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~--- 257 (343)
T 2xzm_R 199 WNTNF-QI----RYTFKA------------HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-GST--- 257 (343)
T ss_dssp EETTT-EE----EEEEEC------------CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-SSC---
T ss_pred EcCCC-ce----eEEEcC------------ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-CCc---
Confidence 99543 21 234444 447899999999999999985 699999999542444444422 211
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceee-eEec-----------cCCCceEEEEEccCCCCC
Q 011257 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE-----------ASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~-----------~~~~~v~~~~~sp~~~~~ 456 (490)
|.+++|+|++++|+++ .|+.|++|++.+++... ..+. +|...|.+++|+|+++..
T Consensus 258 ------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 258 ------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp ------------EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred ------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 5699999999988755 57889999998876421 1333 688899999999999988
Q ss_pred CCCccCcce
Q 011257 457 PLGSLSGVV 465 (490)
Q Consensus 457 ~~~~~~~~~ 465 (490)
+.++.++..
T Consensus 325 ~sg~~Dg~v 333 (343)
T 2xzm_R 325 FAGFTDGVI 333 (343)
T ss_dssp EEEETTSEE
T ss_pred EEecCCceE
Confidence 776655543
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.3e-35 Score=276.88 Aligned_cols=283 Identities=14% Similarity=0.224 Sum_probs=208.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcC---CCCCCccccccccCceEEeccCCccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA---AGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..|.+++|+| +|.+|++++ ++.+++|++.+++.......+...... ..............+++|+|+|+
T Consensus 65 ~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~----- 136 (393)
T 1erj_A 65 SVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK----- 136 (393)
T ss_dssp SCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-----
T ss_pred CEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC-----
Confidence 8899999997 677888876 789999999998766554332111000 00000000011123789999999
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
+|++++.|+.|++||+ . ..+....+ .+|...|.+++|+|+++.|+++ .|+.|++||+++.. ..
T Consensus 137 -------~l~s~~~d~~i~iwd~-~------~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~ 200 (393)
T 1erj_A 137 -------FLATGAEDRLIRIWDI-E------NRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CS 200 (393)
T ss_dssp -------EEEEEETTSCEEEEET-T------TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EE
T ss_pred -------EEEEEcCCCeEEEEEC-C------CCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eE
Confidence 8999999999999992 2 12233333 7899999999999999999999 89999999998544 32
Q ss_pred eeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
..+ .+...+.+++|+| ++ .+|++|+.|+.|++||+++++.. ..+... .....+|...|.++
T Consensus 201 ~~~--------~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~~-----~~~~~~h~~~v~~v 262 (393)
T 1erj_A 201 LTL--------SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDSE-----NESGTGHKDSVYSV 262 (393)
T ss_dssp EEE--------ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC-----------CCCSSCEEEE
T ss_pred EEE--------EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeeccc-----ccCCCCCCCCEEEE
Confidence 221 2466799999999 66 99999999999999999987643 222211 01124566899999
Q ss_pred EECCCCCEEEEEc-CCeEEEEeccCC-----------CCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 011257 348 KFARNGRHILSRD-YMTLKLWDINMD-----------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (490)
Q Consensus 348 ~~sp~g~~l~sg~-d~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 415 (490)
+|+|+|++|++|+ |+.|++||++.. +.+...+.+|... |.+++|+|++++|++
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQNDEYILS 327 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGGCEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCCCEEEE
Confidence 9999999999985 699999999751 1223344555543 569999999999999
Q ss_pred eecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCC
Q 011257 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 416 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
|+.||.|++||+.+++. +..+.+|...|.+++|+|+.
T Consensus 328 gs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 328 GSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp EETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSC
T ss_pred EeCCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCc
Confidence 99999999999999987 68899999999999999853
No 58
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=267.94 Aligned_cols=283 Identities=16% Similarity=0.242 Sum_probs=219.6
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeE
Q 011257 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (490)
Q Consensus 38 V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 117 (490)
+++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|. ..|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~~ 72 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYISS 72 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEEE
Confidence 5789999986 788775 999999999887632 112345666 77999
Q ss_pred EEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCc
Q 011257 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (490)
Q Consensus 118 v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~ 197 (490)
++|+| ++++|++|+.||+|++||+.+++.......+... ...+++++. .
T Consensus 73 v~~~~--~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~------------~ 121 (318)
T 4ggc_A 73 VAWIK--EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSY------------I 121 (318)
T ss_dssp EEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETT------------E
T ss_pred EEECC--CCCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCC------------E
Confidence 99996 6779999999999999999999877665543211 345666666 7
Q ss_pred cccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCC
Q 011257 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (490)
Q Consensus 198 l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~ 276 (490)
+++++.++.+++|+. ... ...... ..+|...+..+.+.+++++|+++ .|+.|++||+++........ .
T Consensus 122 l~s~~~~~~~~~~~~-~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~ 190 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDV-RVA-----EHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----Q 190 (318)
T ss_dssp EEEEETTSEEEEEET-TSS-----SCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----E
T ss_pred EEEEecCCceEeeec-CCC-----ceeEEE-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----e
Confidence 899999999999982 111 112222 37888999999999999999999 89999999998544322111 1
Q ss_pred ccCCCCCceEEEEEcCCCCcEE--EEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC
Q 011257 277 NMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~ 354 (490)
....+...|.+++++|++...+ ++++.+++|++||.+..... ... .+ ...+..+.|+|++.
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~~-~~------------~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAV-DA------------HSQVCSILWSPHYK 253 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EEE-EC------------SSCEEEEEEETTTT
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----ccc-cc------------eeeeeeeeeccccc
Confidence 2356788999999999885554 45667899999999876532 121 12 26789999999999
Q ss_pred EEEEE---cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 355 HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 355 ~l~sg---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
.++++ .|+.|++||+++ ++++.++.+|... |++++|+||+++||+|+.||+|+|||+.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 88864 369999999997 9999999999876 569999999999999999999999999754
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=284.36 Aligned_cols=326 Identities=13% Similarity=0.120 Sum_probs=222.5
Q ss_pred ccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 32 ~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..|.+.|++++|+| ++++||+|+.||.|+|||+.+..... ..+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence 46899999999999 99999999999999999997621100 00001111 466
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEcc---CCeEEEEeeeccCCCcCCCCCCccccccccCceE--EeccCCc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS--YMANGGC 185 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~g~~ 185 (490)
..|++++|+| ++.+|++++.||+|++||+. .++.......+......... ........++. +++++.
T Consensus 112 --~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~- 183 (437)
T 3gre_A 112 --STVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN---FGKNEYAVRMRAFVNEEKS- 183 (437)
T ss_dssp --SCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG---GSSCCCEEEEEEEECSSCE-
T ss_pred --CCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC---cccccCceEEEEEEcCCCC-
Confidence 8899999996 66799999999999999995 44443332221100000000 00000111233 345555
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccc--cccceeEEEecCCCCEEEEe-cCCcEEEEEcC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~ 262 (490)
++++++.|+.|++||+ .. .++...+ .+ |...|.+++|+|++++|++| .|+.|++||++
T Consensus 184 -----------~l~~~~~d~~i~iwd~-~~------~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 184 -----------LLVALTNLSRVIIFDI-RT------LERLQII-ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp -----------EEEEEETTSEEEEEET-TT------CCEEEEE-ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred -----------EEEEEeCCCeEEEEeC-CC------CeeeEEE-ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 8999999999999992 22 2333343 34 88999999999999999999 89999999998
Q ss_pred CCCceeeeeecCCCccCCCCCceEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccc---
Q 011257 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS--- 335 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--- 335 (490)
. ......+ ...|...|.+++|+| ++ .+|++|+.||.|++||+++++.. ..+..+.......
T Consensus 245 ~-~~~~~~~------~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 245 F-NVLIRSW------SFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ----YAFINSDEQPSMEHFL 312 (437)
T ss_dssp T-TEEEEEE------BCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE----EEEESSSSCCCGGGGS
T ss_pred C-ccEEEEE------ecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE----EEEEcCCCCCccceec
Confidence 5 4443322 125777899996665 56 79999999999999999987642 4444443221111
Q ss_pred ---------cccc--cccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccccc-----------
Q 011257 336 ---------FFTE--IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL----------- 392 (490)
Q Consensus 336 ---------~~~~--h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------- 392 (490)
.+.+ |...|++++|+ ++++|++|+ |+.|++||+.+ ++.+..+.+|..........
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLR 390 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEE
T ss_pred ccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEE
Confidence 1233 88899999999 788999985 69999999997 78777777653211000000
Q ss_pred ---------c--cCCCccceeeEEEcCC--CCEEEEeecCCeEEEEe
Q 011257 393 ---------Y--ENDSIFDKFECCLSGD--GGRVATGSYSNLFRVFG 426 (490)
Q Consensus 393 ---------~--~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~vw~ 426 (490)
. .......|.+++|+++ +.+|++|+.||.|+||+
T Consensus 391 ~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 KMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0 0001224679999998 78999999999999995
No 60
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=277.23 Aligned_cols=302 Identities=11% Similarity=0.073 Sum_probs=214.8
Q ss_pred ccccccEEEEEECCCCC-EEEEecC---CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 32 VQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~-~latg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
..|.+.|++++|+|++. ++++|+. ||.|++||+.+++.. .....+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc-------
Confidence 35999999999999986 5556665 999999999876521 11122555
Q ss_pred eeeeccceeEEEEeecC-CCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~-~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
..|++++|+|+. ++.+|++++.||.|++||+.+++ .......+. +.+..... ...++|+|+++
T Consensus 66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~-~~~~~~s~~~~- 130 (357)
T 3i2n_A 66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK--------EIINAIDG-IGGLGIGEGAP- 130 (357)
T ss_dssp -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS--------SCEEEEEE-ESGGGCC-CCC-
T ss_pred -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc--------cceEEEee-ccccccCCCcc-
Confidence 789999999742 25799999999999999999875 333322221 12220000 00124567777
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccc----ccceeEEE----ecCCCCEEEEe-cCCcE
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSIS----NNSDGETFISA-DDLRI 256 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~----~~~~~~~l~~~-~d~~i 256 (490)
++++++.|+.|++||+ ..... ....+ ..| ...+.+++ |+|++++|+++ .|+.|
T Consensus 131 -----------~l~~~~~d~~i~vwd~-~~~~~-----~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i 192 (357)
T 3i2n_A 131 -----------EIVTGSRDGTVKVWDP-RQKDD-----PVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDI 192 (357)
T ss_dssp -----------EEEEEETTSCEEEECT-TSCSS-----CSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEE
T ss_pred -----------EEEEEeCCCeEEEEeC-CCCCC-----cceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeE
Confidence 8999999999999993 22110 11111 222 34788888 78999999999 89999
Q ss_pred EEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc
Q 011257 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (490)
Q Consensus 257 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
++||++.... .. ...|...|.+++|+| ++ ..|++++.||.|++||+++++.. ..+...
T Consensus 193 ~i~d~~~~~~-~~--------~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~----- 253 (357)
T 3i2n_A 193 KLFDLRNMAL-RW--------ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFASV----- 253 (357)
T ss_dssp EEEETTTTEE-EE--------EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEEE-----
T ss_pred EEEECccCce-ee--------ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceeee-----
Confidence 9999985443 22 345788999999999 88 89999999999999999876532 232210
Q ss_pred cccccccccceEEEEECCCCC-EEEEE-cCCeEEEEeccCCC------------------Cceeeeeeeccccccccccc
Q 011257 334 RSFFTEIIASISDIKFARNGR-HILSR-DYMTLKLWDINMDS------------------GPVATFQVHEHLRPKLCDLY 393 (490)
Q Consensus 334 ~~~~~~h~~~i~~l~~sp~g~-~l~sg-~d~~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 393 (490)
.+.+|...|++++|+|+++ +|+++ .||.|++||++... +.+..+..|...
T Consensus 254 --~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------- 323 (357)
T 3i2n_A 254 --SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP-------- 323 (357)
T ss_dssp --EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC--------
T ss_pred --ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC--------
Confidence 1224558999999999998 78887 46999999998522 134445555443
Q ss_pred cCCCccceeeEEEcCCCCEEE-EeecCCeEEEEecCCCc
Q 011257 394 ENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 394 ~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~~ 431 (490)
|.+++|+|++++|+ +++.||.|++||+.+.+
T Consensus 324 -------v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 324 -------ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp -------EEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred -------eeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 66999999999998 89999999999998664
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.6e-35 Score=278.00 Aligned_cols=312 Identities=13% Similarity=0.140 Sum_probs=224.5
Q ss_pred ccccccEEEEEECCC----CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 32 ~~h~~~V~~~~~s~d----g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
..|.++|++++|+|+ ...+++++.++.|++||+.+++.. ..+..|..
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-----------------------~~~~~~~~------ 65 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-----------------------RLLQSYVD------ 65 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-----------------------EEEEEEEC------
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-----------------------Eeeeeccc------
Confidence 379999999999984 445666667779999999866521 22222110
Q ss_pred eeeeccceeEEEEeecCC--CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec-cCC
Q 011257 108 SLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGG 184 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~ 184 (490)
..+...|++++|+|+.+ +.+|++++.||.|++||+.+++.......+. +.+ .+++|+| ++.
T Consensus 66 -~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~i-------~~~~~~~~~~~ 129 (366)
T 3k26_A 66 -ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG--------NAI-------NELKFHPRDPN 129 (366)
T ss_dssp -SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC--------SCE-------EEEEECSSCTT
T ss_pred -cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC--------CcE-------EEEEECCCCCC
Confidence 01127799999998543 6799999999999999999887766554321 122 2789999 777
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeee--ccccccceeEEEecCCCCEEEEe-cCCcEEEEEc
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRINLWNL 261 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~ 261 (490)
++++++.|+.|++||+ .. .+....+ ..+|...|.+++|+|++++|+++ .|+.|++||+
T Consensus 130 ------------~l~s~~~dg~i~iwd~-~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 130 ------------LLLSVSKDHALRLWNI-QT------DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp ------------EEEEEETTSCEEEEET-TT------TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred ------------EEEEEeCCCeEEEEEe-ec------CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEEC
Confidence 8999999999999993 21 1222222 15788999999999999999999 8999999999
Q ss_pred CCCCceeeeeec---------------------CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc
Q 011257 262 EISNQSFNIVDV---------------------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (490)
Q Consensus 262 ~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (490)
+..... ..+.. .......|...|.+++|+ + .+|++++.|+.|++||++++...
T Consensus 191 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~-- 264 (366)
T 3k26_A 191 NSKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDD-- 264 (366)
T ss_dssp CSHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCC--
T ss_pred CCCccc-cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCcccc--
Confidence 854221 10000 001223489999999999 5 79999999999999999886532
Q ss_pred ccceeccccCC-CccccccccccceEEEEECCC--CCEEEEEc-CCeEEEEeccCCCCce----eeeeeecccccccccc
Q 011257 321 HSKLFEEQEAP-GTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPV----ATFQVHEHLRPKLCDL 392 (490)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~h~~~i~~l~~sp~--g~~l~sg~-d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~ 392 (490)
...+..+... .....+..|...|.+++|+|+ +++|++|+ ||.|++||+.. +++. ..+..|...
T Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~------- 335 (366)
T 3k26_A 265 -IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCG------- 335 (366)
T ss_dssp -GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCC-------
T ss_pred -ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccC-------
Confidence 1111111110 112334556788999999999 99999985 59999999986 5543 355555211
Q ss_pred ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 393 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
..|.+++|+|++++|++++.||.|++||+.
T Consensus 336 ------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 336 ------AAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ------SCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ------CceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 116699999999999999999999999986
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-34 Score=280.41 Aligned_cols=305 Identities=12% Similarity=0.241 Sum_probs=233.4
Q ss_pred ccccccc-EEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDI-ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~-V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...|.+. ++|+.| ++++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS---------
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC---------
Confidence 3467777 467776 46799999999999999998765 356678898
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec--cCCccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGE 187 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~~~ 187 (490)
+.|++++|+| ++ .+++++.||+|++||+.+++.......+. +.+. +++|++ ++.
T Consensus 163 ---~~V~~l~~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~--------~~v~-------~l~~~~~~~~~--- 218 (464)
T 3v7d_B 163 ---GGVWALKYAH--GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHN--------STVR-------CLDIVEYKNIK--- 218 (464)
T ss_dssp ---SCEEEEEECS--TT-EEEEEETTSCEEEEETTTTEEEEEECCCS--------SCEE-------EEEEEESSSCE---
T ss_pred ---cCEEEEEEcC--CC-EEEEEeCCCCEEEEECCCCcEEEEECCCC--------CccE-------EEEEecCCCCC---
Confidence 8899999986 33 89999999999999999998666554331 1222 667774 555
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccc----------------eeeeeccccccceeEEEecCCCCEEEEe
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
++++++.|+.|++||+........... .... ..+|...+.++ ++++++++++
T Consensus 219 ---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~--~~~~~~l~~~ 286 (464)
T 3v7d_B 219 ---------YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV-LRGHMASVRTV--SGHGNIVVSG 286 (464)
T ss_dssp ---------EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE-ECCCSSCEEEE--EEETTEEEEE
T ss_pred ---------EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE-ccCccceEEEE--cCCCCEEEEE
Confidence 899999999999999432221111000 1222 36788888776 5778999999
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccC
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.|+.|++||+++.. ... .+.+|...|.+++|+|++ ..+++|+.||.|++||+++++. +..+..|.
T Consensus 287 ~~d~~i~vwd~~~~~-~~~-------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~- 352 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMK-CLY-------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGEL----MYTLQGHT- 352 (464)
T ss_dssp ETTSCEEEEETTTTE-EEE-------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEE----EEEECCCS-
T ss_pred eCCCeEEEEECCCCc-EEE-------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcE----EEEEeCCC-
Confidence 89999999998443 333 357799999999999999 9999999999999999998764 35555544
Q ss_pred CCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
..|.+++|+ +++|+++ .||.|++||+.+ ........ +... +..++|+++
T Consensus 353 -----------~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~~ 402 (464)
T 3v7d_B 353 -----------ALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYVS 402 (464)
T ss_dssp -----------SCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEEC
T ss_pred -----------CcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEeC
Confidence 789999998 5788887 569999999986 55444332 2222 237899999
Q ss_pred CCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEc
Q 011257 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~s 450 (490)
+++|++|+ ||.|++||+.+++.....+..|...|.+++|+
T Consensus 403 ~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 403 DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 99999998 89999999999988544478899999999997
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=264.31 Aligned_cols=280 Identities=16% Similarity=0.226 Sum_probs=219.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++| |++++||+|+.||.|++||+.++. ....+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence 4579999999999 999999999999999999997654 235566777
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe---EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..|.+++|+| ++.++++++.||.|++|++.... .......+ .+.+ .+++| ++.
T Consensus 60 --~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~--------~~~i-------~~~~~--~~~--- 115 (313)
T 3odt_A 60 --GFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH--------QGNV-------CSLSF--QDG--- 115 (313)
T ss_dssp --SCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC--------SSCE-------EEEEE--ETT---
T ss_pred --ccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCCcccchhhc--------ccCE-------EEEEe--cCC---
Confidence 8899999997 66799999999999999987642 11111111 1111 14444 455
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCC
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
++++++.|+.|++|| . ......+ ..|...+.+++|.| +++.++++ .|+.|++||..
T Consensus 116 ---------~l~~~~~d~~i~~~d----~-----~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--- 173 (313)
T 3odt_A 116 ---------VVISGSWDKTAKVWK----E-----GSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--- 173 (313)
T ss_dssp ---------EEEEEETTSEEEEEE----T-----TEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---
T ss_pred ---------EEEEEeCCCCEEEEc----C-----CcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---
Confidence 899999999999998 1 1222232 67889999999988 89999998 89999999943
Q ss_pred ceeeeeecCCCccCC-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 266 QSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
.... .+.. |...+.+++|+|++ . +++++.||.|++||+++++. +..+..|. ..|
T Consensus 174 ~~~~-------~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~----~~~~~~~~------------~~i 228 (313)
T 3odt_A 174 KVIK-------TFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDV----LRTYEGHE------------SFV 228 (313)
T ss_dssp EEEE-------EECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCE----EEEEECCS------------SCE
T ss_pred ceEE-------EEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhh----hhhhhcCC------------ceE
Confidence 2222 1233 88999999999998 5 99999999999999998764 34554443 789
Q ss_pred EEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
++++|+|++.+++.+.|+.|++||+.+ ++++..+..|... |.+++|+|+++ +++++.||.|++
T Consensus 229 ~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 229 YCIKLLPNGDIVSCGEDRTVRIWSKEN-GSLKQVITLPAIS---------------IWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp EEEEECTTSCEEEEETTSEEEEECTTT-CCEEEEEECSSSC---------------EEEEEECTTSC-EEEEETTSCEEE
T ss_pred EEEEEecCCCEEEEecCCEEEEEECCC-CceeEEEeccCce---------------EEEEEEccCCC-EEEEeCCCcEEE
Confidence 999999999644445679999999997 8888888887654 56999999999 556899999999
Q ss_pred EecCCCce
Q 011257 425 FGCSEGSA 432 (490)
Q Consensus 425 w~~~~~~~ 432 (490)
|++++++.
T Consensus 292 w~~~~~~~ 299 (313)
T 3odt_A 292 FSQEKSRW 299 (313)
T ss_dssp EESCGGGC
T ss_pred EeCCCCce
Confidence 99998765
No 64
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.1e-35 Score=265.97 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=196.6
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
..++.+|. +.|++++|+| ++.++++++.||+|++||+.++.....
T Consensus 6 ~~~~~~h~------------~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~~--------------------- 50 (304)
T 2ynn_A 6 KKTFSNRS------------DRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVRS--------------------- 50 (304)
T ss_dssp EEEEEEEC------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEEE---------------------
T ss_pred EEeecCCC------------CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeEE---------------------
Confidence 45677887 8899999997 667999999999999999988764331
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~- 251 (490)
+..|...|.+++|+|++++|++|
T Consensus 51 --------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 51 --------------------------------------------------------IQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp --------------------------------------------------------EECCSSCEEEEEEEGGGTEEEEEE
T ss_pred --------------------------------------------------------eeccCCcEEEEEEeCCCCEEEEEC
Confidence 13555788999999999999999
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.|+.|++||+.+..... .+.+|...|.+++|+|++ .+|++|+.|++|++||++++... ...+.+
T Consensus 75 ~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~~~~~~---- 138 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---EQTFEG---- 138 (304)
T ss_dssp TTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---EEEECC----
T ss_pred CCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---hhhhcc----
Confidence 89999999998554432 357899999999999999 99999999999999999876322 233444
Q ss_pred CccccccccccceEEEEECC-CCCEEEEEc-CCeEEEEeccCCCCceeeeeeec-cccccccccccCCCccceeeEEEcC
Q 011257 332 GTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
|...|.+++|+| ++.+|++|+ |++|++||++. ..+...+..+. .. |..++|+|
T Consensus 139 --------h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~~ 194 (304)
T 2ynn_A 139 --------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDYYP 194 (304)
T ss_dssp --------CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEECC
T ss_pred --------cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEEEE
Confidence 448899999999 678999874 69999999986 55555544332 22 34778876
Q ss_pred --CCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 409 --DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 409 --d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
++++|++|+.||.|++||++++++ +..+.+|...|..++|+|+++..+.++.++..
T Consensus 195 ~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i 252 (304)
T 2ynn_A 195 LPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (304)
T ss_dssp STTCCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred cCCCCEEEEEcCCCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeE
Confidence 788999999999999999999987 68999999999999999999987777665543
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.3e-35 Score=302.75 Aligned_cols=318 Identities=15% Similarity=0.182 Sum_probs=250.2
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|+|++||+|+.||.|+|||+.++. ....+.+|.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------------------~~~~~~~~~---------- 55 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------------------EVRSIQVTE---------- 55 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEEecCC----------
Confidence 34799999999999999999999999999999998765 245677888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+| ++.+|++++.||.|++||+.+++.......+. +.+ .+++|+|+++
T Consensus 56 --~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~v-------~~~~~s~~~~------ 110 (814)
T 3mkq_A 56 --TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--------DYI-------RSIAVHPTKP------ 110 (814)
T ss_dssp --SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEECCS--------SCE-------EEEEECSSSS------
T ss_pred --CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--------CCE-------EEEEEeCCCC------
Confidence 8899999997 56799999999999999999987766554332 122 3889999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
++++++.|+.|++|++ ... ...... ..+|...|.+++|+| ++..|+++ .|+.|++||+.......
T Consensus 111 ------~l~~~~~dg~i~vw~~-~~~-----~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 111 ------YVLSGSDDLTVKLWNW-ENN-----WALEQT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp ------EEEEEETTSEEEEEEG-GGT-----SEEEEE-EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred ------EEEEEcCCCEEEEEEC-CCC-----ceEEEE-EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 8999999999999993 211 122223 368889999999999 88899998 89999999998555443
Q ss_pred eeeecCCCccCCCCCceEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
.. ...+...+.+++|+| ++ .+|++++.||.|++||+++++. +..+..| ...|.+
T Consensus 178 ~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~------------~~~v~~ 233 (814)
T 3mkq_A 178 TL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSC----VATLEGH------------MSNVSF 233 (814)
T ss_dssp EE-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEE----EEEEECC------------SSCEEE
T ss_pred EE-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE----EEEEcCC------------CCCEEE
Confidence 32 133458899999999 88 8999999999999999988754 3444444 378999
Q ss_pred EEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC--EEEEeecCCeEE
Q 011257 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLFR 423 (490)
Q Consensus 347 l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~s~~~dg~i~ 423 (490)
++|+|++++|++++ ||.|++||+.+ ++.+..+..+... +++++|+|+++ ++++ +.++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~-~~~~~~~ 296 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLER---------------SWCIATHPTGRKNYIAS-GFDNGFT 296 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSS---------------EEEEEECTTCGGGEEEE-EETTEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCc---------------EEEEEEccCCCceEEEE-EeCCCEE
Confidence 99999999999975 69999999997 8888888777654 56999999987 4554 4567788
Q ss_pred EEecCCCceee------------------------------------------eEeccCCCceEEEEEccCCCCCCCCc
Q 011257 424 VFGCSEGSAES------------------------------------------TTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 424 vw~~~~~~~~~------------------------------------------~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
+|++..+.... ..+..+...+.+++|+|+|...+.++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence 88876532110 11233455688999999998777665
No 66
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-35 Score=277.30 Aligned_cols=295 Identities=12% Similarity=0.230 Sum_probs=214.3
Q ss_pred cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccc-cCCcccceeeeeeeccce
Q 011257 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~~~~~V 115 (490)
.+.+++|++ ..+++++.|+.|++||+.+++.. ..+. .|. ..|
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~------------~~v 137 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES------------TYV 137 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT------------CCE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC------------CCE
Confidence 355577775 45778889999999999877631 2222 255 779
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
++++|+| ++.+|++++.||.|++||+.+++.......+. +.+. +++| ++.
T Consensus 138 ~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~-------~~~~--~~~----------- 187 (401)
T 4aez_A 138 ASVKWSH--DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ--------ARVG-------CLSW--NRH----------- 187 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCS--------SCEE-------EEEE--ETT-----------
T ss_pred EEEEECC--CCCEEEEECCCCeEEEEECcCCeEEEEecCCC--------CceE-------EEEE--CCC-----------
Confidence 9999997 67799999999999999999887666544321 1222 4555 444
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
++++++.|+.|++||+ ... ...... ..+|...|.+++|+|++++|+++ .|+.|++||++......
T Consensus 188 -~l~~~~~dg~i~i~d~-~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------ 253 (401)
T 4aez_A 188 -VLSSGSRSGAIHHHDV-RIA-----NHQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF------ 253 (401)
T ss_dssp -EEEEEETTSEEEEEET-TSS-----SCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE------
T ss_pred -EEEEEcCCCCEEEEec-ccC-----cceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE------
Confidence 8999999999999993 211 112223 36899999999999999999999 89999999998544332
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
.+..|...|.+++|+|++..++++++ .|+.|++||+++++.. ..+..+ ..|.+++|+|+
T Consensus 254 --~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~~~-------------~~v~~~~~s~~ 314 (401)
T 4aez_A 254 --TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVDAG-------------SQVTSLIWSPH 314 (401)
T ss_dssp --EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEECS-------------SCEEEEEECSS
T ss_pred --EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEeCC-------------CcEEEEEECCC
Confidence 34678999999999998867888876 7999999999987642 344322 57999999999
Q ss_pred CCEEEE--E-cCCeEEEEeccCCCCceee--eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 353 GRHILS--R-DYMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 353 g~~l~s--g-~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
+++|++ | .|+.|++||+.+ +..... +.+|... |.+++|+|++++|++++.||.|++|++
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred CCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999998 4 369999999986 544443 4455544 559999999999999999999999999
Q ss_pred CCCceeeeEeccCCCceEEE
Q 011257 428 SEGSAESTTLEASKNPMRRQ 447 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~ 447 (490)
.+++........+..+...+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i 398 (401)
T 4aez_A 379 YDGDHVKRPIPITKTPSSSI 398 (401)
T ss_dssp CC------------------
T ss_pred CCCccccccccccCCCccce
Confidence 99876433344444444443
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-34 Score=290.44 Aligned_cols=317 Identities=12% Similarity=0.173 Sum_probs=245.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|+|++||+++ ++.|++||+.++.. ..+....+.+|.
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~---------- 63 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG---------- 63 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT----------
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC----------
Confidence 447899999999999999999998 88999999986610 001346678888
Q ss_pred eccc-eeEEEEeecCCCcEEEEEeCcCeEEEEEccCC------eEEEEeeeccCCCcCCCCCCccccccccCceEEeccC
Q 011257 111 IEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (490)
Q Consensus 111 ~~~~-V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 183 (490)
.. |++++|+|..++.+|++++.||.|++||+.++ ..........+ .+.+ ..++|+|++
T Consensus 64 --~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v-------~~~~~s~~~ 128 (615)
T 1pgu_A 64 --SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPI-------SDISWDFEG 128 (615)
T ss_dssp --TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCE-------EEEEECTTS
T ss_pred --CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccE-------EEEEEeCCC
Confidence 88 99999996325679999999999999999755 32333222211 1122 388999999
Q ss_pred CccccccccCCCCccccCCCC----CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEE
Q 011257 184 GCGERNFGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRIN 257 (490)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~ 257 (490)
+ ++++++.+ +.|.+|| . ......+ .+|...|.+++|+|+++ .++++ .|+.|+
T Consensus 129 ~------------~l~~~~~~~~~~~~v~~~d-~--------~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 186 (615)
T 1pgu_A 129 R------------RLCVVGEGRDNFGVFISWD-S--------GNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVV 186 (615)
T ss_dssp S------------EEEEEECCSSCSEEEEETT-T--------CCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred C------------EEEEeccCCCCccEEEEEE-C--------CCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence 9 78888777 7899987 1 1123333 78999999999999998 78888 899999
Q ss_pred EEEcCCCCceeeeeecCCCccCCCCC---ceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCcccccccccee-ccccCCC
Q 011257 258 LWNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEAPG 332 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~ 332 (490)
+||+... +... .+.+|.. .|.+++|+|+ + ++|++++.||.|++||+++++.. ..+ ..
T Consensus 187 vwd~~~~-~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~----- 248 (615)
T 1pgu_A 187 FYQGPPF-KFSA-------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD----- 248 (615)
T ss_dssp EEETTTB-EEEE-------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT-----
T ss_pred EEeCCCc-ceee-------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc-----
Confidence 9998843 3333 3567888 9999999999 8 99999999999999999987643 333 20
Q ss_pred ccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
...|...|.+++|+ ++++|++++ |+.|++||+++ ++.+..+..+..... ..+.++.|+ +++
T Consensus 249 ----~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 249 ----QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLG-----------NQQVGVVAT-GNG 310 (615)
T ss_dssp ----TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGG-----------GCEEEEEEE-ETT
T ss_pred ----ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCccc-----------CceeEEEeC-CCC
Confidence 00344789999999 999999975 69999999997 788888776632110 013477786 999
Q ss_pred EEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 412 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
++++++.||.|++||+.+++. +..+.+|..+|.+++| |+
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEE-EEEECCCSSCEEEEET-TT
T ss_pred eEEEEECCCCEEEEECCCCcE-EEEEeCCCCCEEEEEe-cC
Confidence 999999999999999998776 6788889999999998 77
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-34 Score=275.60 Aligned_cols=307 Identities=14% Similarity=0.226 Sum_probs=237.2
Q ss_pred cccccccE-EEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 31 ~~~h~~~V-~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
...|.+.| +|+. ++|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 159 (445)
T ss_dssp EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC---------
Confidence 44688765 5555 468999999999999999998766 346678888
Q ss_pred eeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
+.|.+++|+ +.++++++.||+|++||+.+++.......+.. .+. +++| ++.
T Consensus 160 ---~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--------~v~-------~~~~--~~~----- 210 (445)
T 2ovr_B 160 ---GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHTLYGHTS--------TVR-------CMHL--HEK----- 210 (445)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEEECCCSS--------CEE-------EEEE--ETT-----
T ss_pred ---CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC--------cEE-------EEEe--cCC-----
Confidence 889999996 45999999999999999999877665443221 111 3444 344
Q ss_pred cccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
.+++++.|+.|++||+ .. .++...+ .+|...|.++++ +++.++++ .|+.|++||+++.. ..
T Consensus 211 -------~l~s~s~dg~i~~wd~-~~------~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~-~~ 272 (445)
T 2ovr_B 211 -------RVVSGSRDATLRVWDI-ET------GQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET-CL 272 (445)
T ss_dssp -------EEEEEETTSEEEEEES-SS------CCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE-EE
T ss_pred -------EEEEEeCCCEEEEEEC-CC------CcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc-Ee
Confidence 7899999999999992 21 2233333 688899999999 77889998 89999999998543 33
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~ 348 (490)
. .+.+|...|.+++| ++ ..+++++.||.|++||+++++. +..+..+. ..+.++.
T Consensus 273 ~-------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~------------~~v~~~~ 326 (445)
T 2ovr_B 273 H-------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNC----IHTLTGHQ------------SLTSGME 326 (445)
T ss_dssp E-------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCE----EEEECCCC------------SCEEEEE
T ss_pred E-------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCE----EEEEcCCc------------ccEEEEE
Confidence 3 35678999999999 56 8999999999999999998764 34554443 6788777
Q ss_pred ECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 349 ~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
++ +++|++|+ ||.|++||+++ ++++..+..+.... ..|.+++|+ +++|++|+.||.|++||+
T Consensus 327 ~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~------------~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 327 LK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQ------------SAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCS------------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred Ee--CCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCC------------CCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 74 67888874 69999999997 88888887632111 115588885 689999999999999999
Q ss_pred CCCceeeeEe-----ccCCCceEEEEEccCCCCCCCCccC
Q 011257 428 SEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 428 ~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
.+++. +..+ ..|...|.+++|+|++...+.++.+
T Consensus 390 ~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 390 KTGEF-IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp TTCCE-EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred CCCce-eeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 99987 4555 5788999999999999876666544
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.5e-34 Score=277.69 Aligned_cols=290 Identities=12% Similarity=0.161 Sum_probs=210.7
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec-cCCcccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGERNF 190 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~ 190 (490)
+..|++|+|+|. ++.+|++|+.||+|+|||+.+++.........+ .+.+ .+++|+| ++.
T Consensus 119 ~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH------~~~V-------~~l~f~p~~~~------ 178 (435)
T 4e54_B 119 DRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA------GGSI-------TGLKFNPLNTN------ 178 (435)
T ss_dssp SSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS------SCCC-------CEEEECSSCTT------
T ss_pred CCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC------CCCE-------EEEEEeCCCCC------
Confidence 378999999983 456899999999999999988765444433322 1223 3889998 466
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeec--cccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
+|++++.|++|++|| +... ....+. ..+...+.+++|+|++++|++| .|+.|++||++. ...
T Consensus 179 ------~l~s~s~D~~v~iwd-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 179 ------QFYASSMEGTTRLQD-FKGN-------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243 (435)
T ss_dssp ------EEEEECSSSCEEEEE-TTSC-------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC
T ss_pred ------EEEEEeCCCEEEEee-ccCC-------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee
Confidence 899999999999999 2211 111121 2344567889999999999999 899999999873 322
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
..+.+|...|.+++|+|++..+|++|+.|+.|++||+++.+.. ..+. ...+|...|+++
T Consensus 244 --------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~~---------~~~~h~~~v~~~ 302 (435)
T 4e54_B 244 --------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASFL---------YSLPHRHPVNAA 302 (435)
T ss_dssp --------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCCS---------BCCBCSSCEEEC
T ss_pred --------EEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc----ceEE---------Eeeeccccccce
Confidence 1567899999999999998668999999999999999886532 1111 123456899999
Q ss_pred EECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee---------
Q 011257 348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--------- 417 (490)
Q Consensus 348 ~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--------- 417 (490)
+|+|+|++|+++ .|+.|+|||+.. +.....+..|....... . .+..+.|+|++.++++++
T Consensus 303 ~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~d~~~~~~ 372 (435)
T 4e54_B 303 CFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQH--------L-TPIKAAWHPRYNLIVVGRYPDPNFKSC 372 (435)
T ss_dssp CBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSS--------S-CCCBCEECSSSSCEEEECCCCTTSCCS
T ss_pred eECCCCCeeEEEcCCCEEEEEECCC-CccceEEeccccccccc--------c-eeEEEEEcCCCCEEEEEEcCCCCeEEE
Confidence 999999999997 469999999997 77777776665421100 0 012445566555555443
Q ss_pred ---cCCeEEEEecCCCceeeeEeccCCCceEEE-EEccCCCCCCCCccCcceec
Q 011257 418 ---YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 418 ---~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~~~~~~~~~~~~~ 467 (490)
.++.|++||..+++.......+|...|.++ +|+|+|...+.++.+...-|
T Consensus 373 ~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW 426 (435)
T 4e54_B 373 TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIW 426 (435)
T ss_dssp STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEEC
T ss_pred EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346799999999988544456788889987 69999998776654333333
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=293.60 Aligned_cols=324 Identities=9% Similarity=0.068 Sum_probs=209.3
Q ss_pred ccccccEEEEEECCCC---------CEEEE-------------------ecCCCcEEEEEecCCCCCCCcccccccccce
Q 011257 32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg---------~~lat-------------------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 83 (490)
+.+.+.|.+|+|+|++ ++||+ |+.|++|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 3467788899998876 56666 457789999999876521
Q ss_pred eecCCccccccccccCCcccceeeeeeeccceeEEEEeec----CCCcEEEEEeCcCeEEEEEccCCeEEE--EeeeccC
Q 011257 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKK--VFDWNVH 157 (490)
Q Consensus 84 ~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~----~~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~ 157 (490)
......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+.++.... .......
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 00112345565 77999999985 235799999999999999998653210 0000000
Q ss_pred C-CcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccce
Q 011257 158 P-EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI 236 (490)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 236 (490)
. ......+. ..+++|+++ . .|++|+.||+|++||+ ... ......+.+|...|
T Consensus 259 ~~~l~~h~~~-------v~sv~~s~~-~------------~lasgs~DgtV~lWD~-~~~------~~~~~~~~~H~~~V 311 (524)
T 2j04_B 259 SLTLSLADSL-------ITTFDFLSP-T------------TVVCGFKNGFVAEFDL-TDP------EVPSFYDQVHDSYI 311 (524)
T ss_dssp SEEECCTTTC-------EEEEEESSS-S------------EEEEEETTSEEEEEET-TBC------SSCSEEEECSSSCE
T ss_pred eEEEEcCCCC-------EEEEEecCC-C------------eEEEEeCCCEEEEEEC-CCC------CCceEEeecccccE
Confidence 0 00001112 237778764 3 6899999999999993 211 11112237899999
Q ss_pred eEE--EecCCC-CEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCC--CceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 237 NSI--SNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 237 ~~i--~~~~~~-~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
.++ +|+|++ .+|++| .|++|++||+++.... . .+.+|. ..|.+++|+|++ ..|++++.|++|++|
T Consensus 312 ~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~-~-------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lw 382 (524)
T 2j04_B 312 LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT-K-------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAV 382 (524)
T ss_dssp EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH-C-------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEE
T ss_pred EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc-c-------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEE
Confidence 999 578887 899998 8999999999844322 1 123343 247899999998 889999999999999
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
|++++.. +..+.+| ...|++|+|+|+|++|++|+ |++|++||+.. +.+.....+....
T Consensus 383 d~~~~~~----~~~l~gH------------~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~--- 441 (524)
T 2j04_B 383 PSRAAFA----VHPLVSR------------ETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ--- 441 (524)
T ss_dssp ETTCTTC----CEEEEEC------------SSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C---
T ss_pred ECccccc----ceeeecC------------CCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce---
Confidence 9998653 2444444 48999999999999999975 69999999863 3333222111000
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC-CCceeeeEeccCCCceEEEEEccCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
....|++++|+|+++.+.. .| .+.+|+.. ++.. +..+.+|..+|.+++|+|+++
T Consensus 442 -------~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~~-~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 442 -------KSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDVS-KAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp -------CCCEEEECBCCSSSCEEEE--CC-CCCCCC--------------CCCSCCCEEECCSTT
T ss_pred -------eeeEEEEeccCCCCCeEEc--cC-CceecccccCCcc-eeeecCCCceEEEEECCCCCC
Confidence 0011568999999995532 22 34455443 3444 578999999999999999986
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=270.80 Aligned_cols=258 Identities=13% Similarity=0.201 Sum_probs=203.8
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|++++||+|+.||.|+|||+.... .+....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~~h~---------- 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE---------- 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------EEEEEEECCCS----------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------ceeeeEecCCC----------
Confidence 45799999999999999999999999999999997432 12345678888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+|..++.+|++++.||.|++||+.+++......
T Consensus 56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------- 96 (379)
T 3jrp_A 56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 96 (379)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-------------------------------------
Confidence 88999999975457899999999999999998876332211
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
...|...|.+++|+|+ +.+|+++ .|+.|++||++.....
T Consensus 97 --------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 97 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 1456688999999999 9999999 8999999999865332
Q ss_pred eeeeecCCCccCCCCCceEEEEEcC-------------CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p-------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
... .+..|...|.+++|+| ++ .+|++++.||.|++||++++.........+.
T Consensus 139 ~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------- 203 (379)
T 3jrp_A 139 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------- 203 (379)
T ss_dssp CEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEEEEEC--------
T ss_pred eeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeEEEEe--------
Confidence 221 3467899999999999 57 8999999999999999987653222223333
Q ss_pred ccccccccceEEEEECCC---CCEEEEEc-CCeEEEEeccCCCCce---eeeee--eccccccccccccCCCccceeeEE
Q 011257 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGPV---ATFQV--HEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~---g~~l~sg~-d~~i~iwd~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
+|...|.+++|+|+ +++|++++ |+.|++||++. +... ..+.. |.. .|++++
T Consensus 204 ----~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------~v~~~~ 263 (379)
T 3jrp_A 204 ----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-EQGPWKKTLLKEEKFPD---------------VLWRAS 263 (379)
T ss_dssp ----CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS-TTSCCEEEESSSSCCSS---------------CEEEEE
T ss_pred ----cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC-CCccceeeeeccccCCC---------------cEEEEE
Confidence 34588999999999 89999974 69999999986 3321 11111 222 266999
Q ss_pred EcCCCCEEEEeecCCeEEEEecCCCc
Q 011257 406 LSGDGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 406 ~s~d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
|+|++++|++++.||.|++|++..+.
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999999999999999999998654
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.8e-34 Score=263.99 Aligned_cols=285 Identities=11% Similarity=0.057 Sum_probs=223.6
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.|.+.|++++|+|++++|++|+.||.|++|++.++... .....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence 79999999999999999999999999999999866410 0123344676
Q ss_pred cceeEEEEeecCCCc-EEEEEeCcCeEEEEEc-cCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~-~l~~~~~dg~i~lwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+| ++. +|++++.||.|++||+ .+++...
T Consensus 57 ~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------------- 94 (342)
T 1yfq_A 57 HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA---------------------------------------- 94 (342)
T ss_dssp SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence 8899999997 578 8999999999999999 7764311
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccc--cccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC---
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEIS--- 264 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~--- 264 (490)
..+ |...|.+++|+| ++.|+++ .|+.|++||++..
T Consensus 95 --------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 95 --------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp --------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred --------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 134 778899999999 9999998 8999999998841
Q ss_pred -----CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-ccccccccceeccccCCCcccccc
Q 011257 265 -----NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFT 338 (490)
Q Consensus 265 -----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 338 (490)
..... .+. |...|.+++|+|++ +++++.|+.|++||+++ +... ..... .
T Consensus 136 ~~~~~~~~~~-------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~---~~~~~-----------~ 190 (342)
T 1yfq_A 136 VIAVKNLNSN-------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDN---GTIEE-----------S 190 (342)
T ss_dssp CEEEEESCSS-------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCC---CEEEE-----------C
T ss_pred cccccCCeee-------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCcccccc---ceeee-----------c
Confidence 11111 233 88999999999875 99999999999999987 5321 11111 1
Q ss_pred ccccceEEEEECC-CCCEEEEEc-CCeEEEEeccCC-----CCceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 339 EIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 339 ~h~~~i~~l~~sp-~g~~l~sg~-d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
.|...+.+++|+| +++++++++ ||.|++|+++.. .+....+..|..... .......|.+++|+|+++
T Consensus 191 ~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTC
T ss_pred CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCC
Confidence 2336899999999 999999975 699999999873 277788887754210 001112367999999999
Q ss_pred EEEEeecCCeEEEEecCCCceeeeEeccC-CCceEEEEEccCCCCCCCCccCcc
Q 011257 412 RVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
+|++++.||.|++||+.+++. +..+..| ..+|.+++ |++...+.++.++.
T Consensus 265 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CEEEEETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred EEEEecCCceEEEEcCccHhH-hhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 999999999999999999987 6888888 99999999 99988777766544
No 73
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.4e-33 Score=258.03 Aligned_cols=287 Identities=15% Similarity=0.174 Sum_probs=217.5
Q ss_pred ccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE---EEEeeeccCCCcCCCCCCc
Q 011257 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~~~~~~ 167 (490)
.+..+|+||. +.|++|+|+|+ ++++|++|+.|++|++||+...+. .....+..+ ...+
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h------~~~V 89 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH------SHFV 89 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC------SSCE
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC------CCCE
Confidence 3456789999 89999999983 357999999999999999986531 122222211 1122
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
.+++|+|+|+ ++++++.|+.|++|+. .. ...... ...+...+..+.++++++.
T Consensus 90 -------~~~~~s~dg~------------~l~s~~~d~~i~~~~~-~~------~~~~~~-~~~~~~~~~~~~~~~~~~~ 142 (340)
T 4aow_A 90 -------SDVVISSDGQ------------FALSGSWDGTLRLWDL-TT------GTTTRR-FVGHTKDVLSVAFSSDNRQ 142 (340)
T ss_dssp -------EEEEECTTSS------------EEEEEETTSEEEEEET-TT------TEEEEE-EECCSSCEEEEEECTTSSC
T ss_pred -------EEEEECCCCC------------EEEEEcccccceEEee-cc------cceeee-ecCCCCceeEEEEeecCcc
Confidence 3789999999 8999999999999982 11 111112 2456677888999999999
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
|+++ .|+.+++||......... ...+|...+..++|++++. .++++++.|+.|++||+++++. ...+
T Consensus 143 l~s~s~d~~~~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~----~~~~ 211 (340)
T 4aow_A 143 IVSGSRDKTIKLWNTLGVCKYTV-------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL----KTNH 211 (340)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE-------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE----EEEE
T ss_pred ceeecCCCeEEEEEeCCCceEEE-------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce----eeEe
Confidence 9999 899999999874433322 4577899999999998753 4688999999999999998764 2444
Q ss_pred ccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeE
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
.+| ...|++++|+|++++|++| .|+.|++||+++ .+++..+..+.. |.++
T Consensus 212 ~~h------------~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~ 262 (340)
T 4aow_A 212 IGH------------TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDI----------------INAL 262 (340)
T ss_dssp CCC------------SSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECSSC----------------EEEE
T ss_pred cCC------------CCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCCce----------------EEee
Confidence 444 4789999999999999997 469999999997 777777765543 4589
Q ss_pred EEcCCCCEEEEeecCCeEEEEecCCCceeeeE---------eccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTT---------LEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 405 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
+|+|++.++ +++.|+.|++||++++.. +.. ..+|...|++++|+||++..+.++.++..
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKII-VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV 330 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEE-EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeE-EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 999988755 556799999999997754 222 34788999999999999987766655443
No 74
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-35 Score=277.45 Aligned_cols=325 Identities=9% Similarity=0.017 Sum_probs=232.4
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+-...|.+++|||||+++|+++.|++|+ |....+.+ ..+.+.+..++|+|++.. ..+.--..+-..+.++.++
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l----~gh~~~v~~V~FsPdg~~-~~~~~~~~~~~~~~~~~~~ 85 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI----NCNSKNLFHVKEFPLEFE-NKLDFELAQQNGLLNSQPV 85 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC----SSBGGGTEEEEEECCCCC-CTTTTSCCCSSCSSTTSCS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee----cCCCccEEEEEECCCCCc-ceEEEEeCCCceEeecCCC
Confidence 3468899999999999999999999999 75555432 467888999999998832 1111111111112232345
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.+++|+| +|.+|++++.||+|++||.++ +..... +.. ......+ .+++|||||+
T Consensus 86 ~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~---~~~~~sv-------~svafSPDG~-------- 142 (588)
T 2j04_A 86 CYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG---NLSSRTY-------HCFEWNPIES-------- 142 (588)
T ss_dssp CCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSS---CSTTTCE-------EEEEECSSSS--------
T ss_pred CcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC---ccccccE-------EEEEEcCCCC--------
Confidence 8899999997 778999999999999999654 222222 111 0001112 2899999999
Q ss_pred CCCCccccCCCCCcEEEeeeeccccc-ccccceeeee---ccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQET-NLVAGCRRIY---AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
+|++|+.||+|++||+ ..... ....-...++ ..+|...|.+++|+|+| ++++ .|+.|++||+......
T Consensus 143 ----~LAsgs~DGtVkIWd~-~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 143 ----SIVVGNEDGELQFFSI-RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ----CEEEEETTSEEEEEEC-CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ----EEEEEcCCCEEEEEEC-CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 8999999999999993 32211 0000012222 26788999999999999 5555 9999999999854421
Q ss_pred --eeeeecCCCcc-CCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 268 --FNIVDVKPANM-EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 268 --~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
.+ ++ .+|...|.+++|+ + ..+|+++ +++|++||+.+++.. .+. .+|...+
T Consensus 216 ~~~~-------tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~-----~~~-----------~gh~~~V 268 (588)
T 2j04_A 216 PVSR-------MIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSIS-----SLK-----------TGSLENF 268 (588)
T ss_dssp CCEE-------EEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEE-----EEE-----------CSCCSCC
T ss_pred ccee-------eecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEE-----EEE-----------cCCCceE
Confidence 11 23 3688899999999 5 7888887 699999999987531 222 1345889
Q ss_pred EEEEE--CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCe
Q 011257 345 SDIKF--ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (490)
Q Consensus 345 ~~l~~--sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 421 (490)
..++| +||+..|+++. +|+ ++|..+ .++++||+..+++. |++
T Consensus 269 ~~va~~~s~d~~~La~a~edG~-klw~~d--------------------------------~~~~spd~~l~a~~--d~~ 313 (588)
T 2j04_A 269 HIIPLNHEKESTILLMSNKTSY-KVLLED--------------------------------ELHVTADNIIAPYL--EKK 313 (588)
T ss_dssp CEEEETTCSSCEEEEECSSCEE-EEEESS--------------------------------SEEEECCCSSHHHH--HHH
T ss_pred EEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------------------------cEEECCCceEEEEc--CCE
Confidence 99999 99999999986 689 999986 13488898887765 899
Q ss_pred EEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 422 i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
+++|+...+. +..+++ ...|++++|||||+..+.+
T Consensus 314 v~lW~~~g~~--l~~~~~-~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 314 FKKWSTIWNE--FNNYET-TLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp HHHTTTTTTS--SSSSCC-EEEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCc--eeeecc-ceEEEEEEECCCCCEEEEE
Confidence 9999986554 244544 6779999999999776644
No 75
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-33 Score=267.78 Aligned_cols=286 Identities=14% Similarity=0.163 Sum_probs=214.5
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
..+....|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 556666899999999999999999999987655 234567888 889
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
++++|+| ++.+|++++.|++|++||+.+++.......+. +.+ .+++|+|+++
T Consensus 143 ~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--------~~v-------~~~~~~~~~~----------- 194 (420)
T 3vl1_A 143 TKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHR--------ATV-------TDIAIIDRGR----------- 194 (420)
T ss_dssp EEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCS--------SCE-------EEEEEETTTT-----------
T ss_pred EEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC--------CcE-------EEEEEcCCCC-----------
Confidence 9999997 56799999999999999999876555443221 122 2789999998
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeec--cc---------------------cccceeEEEecCCCCEEEEe-
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA--HA---------------------HDYHINSISNNSDGETFISA- 251 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~--~~---------------------~~~~v~~i~~~~~~~~l~~~- 251 (490)
++++++.|+.|++||+ ... ++...+. .. +...+.+++|+|++++|+++
T Consensus 195 -~l~s~~~d~~v~iwd~-~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 195 -NVLSASLDGTIRLWEC-GTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp -EEEEEETTSCEEEEET-TTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred -EEEEEcCCCcEEEeEC-CCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 8999999999999993 211 1121211 11 23555666778999999999
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.|+.|++||+++....... ...|...|.+++|+|++..+|++|+.||.|++||+++++.. +..+..+
T Consensus 267 ~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~--- 333 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQL-------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP---VGEFLIN--- 333 (420)
T ss_dssp TTSCEEEEETTTCCEEEEE-------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEEES---
T ss_pred CCCeEEEEECCCCceeEEc-------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc---hhhhhcc---
Confidence 8999999999866544432 34688999999999999339999999999999999987532 3445443
Q ss_pred CccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCcee--------eeeeeccccccccccccCCCcccee
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA--------TFQVHEHLRPKLCDLYENDSIFDKF 402 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (490)
|...|.++.+ +++++|++++ |+.|++||+.....+.. .+..+.. .|.
T Consensus 334 --------~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~---------------~v~ 389 (420)
T 3vl1_A 334 --------EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD---------------AVS 389 (420)
T ss_dssp --------TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC---------------CCC
T ss_pred --------CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc---------------ceE
Confidence 2367888855 5788999885 69999999986322211 1122222 255
Q ss_pred eEEEcCCCC---EEEEeecCCeEEEEecCC
Q 011257 403 ECCLSGDGG---RVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 403 ~~~~s~d~~---~l~s~~~dg~i~vw~~~~ 429 (490)
+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 390 QFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999999 777788899999999874
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.9e-33 Score=289.78 Aligned_cols=344 Identities=15% Similarity=0.168 Sum_probs=251.4
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
....|++... + .......|.++|++++|+|++++||+|+.||.|++||+.+++.
T Consensus 36 ~v~iwd~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------------------- 89 (814)
T 3mkq_A 36 RVEIWNYETQ--V-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK----------------------- 89 (814)
T ss_dssp EEEEEETTTT--E-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred EEEEEECCCC--c-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------
Confidence 3456776541 1 1223346999999999999999999999999999999987662
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
...+.+|. +.|++++|+| ++.+|++++.||.|++||+.++ ........+. +.+
T Consensus 90 ~~~~~~~~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--------~~v---- 143 (814)
T 3mkq_A 90 VVDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--------HFV---- 143 (814)
T ss_dssp EEEEECCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS--------SCE----
T ss_pred EEEEecCC------------CCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC--------CcE----
Confidence 45677888 8899999997 5679999999999999999987 4444433221 122
Q ss_pred cccCceEEec-cCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEE
Q 011257 172 VSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETF 248 (490)
Q Consensus 172 ~~~~~~~~s~-~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l 248 (490)
.+++|+| ++. .+++++.|+.|++||+ .. ......+...+...+.+++|+| ++.+|
T Consensus 144 ---~~~~~~p~~~~------------~l~~~~~dg~v~vwd~-~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 144 ---MCVAFNPKDPS------------TFASGCLDRTVKVWSL-GQ------STPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp ---EEEEEETTEEE------------EEEEEETTSEEEEEET-TC------SSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred ---EEEEEEcCCCC------------EEEEEeCCCeEEEEEC-CC------CcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 2789999 777 8999999999999992 21 1122233245558899999999 99999
Q ss_pred EEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 249 ~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
+++ .|+.|++||+.+.. ... .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++. +..+..
T Consensus 202 ~~~~~dg~i~~~d~~~~~-~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~----~~~~~~ 268 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKS-CVA-------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKV----EKTLNV 268 (814)
T ss_dssp EEECTTSEEEEEETTTTE-EEE-------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSE----EEEECC
T ss_pred EEEeCCCEEEEEECCCCc-EEE-------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcE----EEEeec
Confidence 999 89999999998543 333 346789999999999999 8999999999999999998754 244444
Q ss_pred ccCCCccccccccccceEEEEECCCCC--EEEEEcCCeEEEEeccCCCCceeeeeeeccccc------c-----------
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLRP------K----------- 388 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~--~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~----------- 388 (490)
+. ..+.+++|+|+++ +++++.++.+.+|++.. ..+...+........ .
T Consensus 269 ~~------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 335 (814)
T 3mkq_A 269 GL------------ERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRG 335 (814)
T ss_dssp SS------------SSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCS
T ss_pred CC------------CcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeeccc
Confidence 43 6899999999987 67788888999999875 433332221110000 0
Q ss_pred cccc-----------ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 389 LCDL-----------YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 389 ~~~~-----------~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
.... .....-..+.+++|+|+|++|++++ ||.+.+|++..... .+.+.+.+++|+|+++..+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la 408 (814)
T 3mkq_A 336 NEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYA 408 (814)
T ss_dssp CCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------EEEEECSEEEECTTSSCEE
T ss_pred ccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------cCCCceEEEEEeCCCCeEE
Confidence 0000 0001111356899999999999988 89999999874432 2245688999999988776
Q ss_pred CCccCc
Q 011257 458 LGSLSG 463 (490)
Q Consensus 458 ~~~~~~ 463 (490)
.+..++
T Consensus 409 ~~~~~g 414 (814)
T 3mkq_A 409 LIDETG 414 (814)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 665443
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.5e-33 Score=258.65 Aligned_cols=273 Identities=14% Similarity=0.190 Sum_probs=204.5
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
..+|.+.|++++|+|++++||+|+.||.|++||+.++.. ..+....+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 347999999999999999999999999999999986542 122345677888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..|++++|+|..++.+|++++.||.|++||+.++.... .+
T Consensus 58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~-------------------------------~~------- 97 (351)
T 3f3f_A 58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC-------------------------------SG------- 97 (351)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT-------------------------------SS-------
T ss_pred --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc-------------------------------cc-------
Confidence 88999999985457799999999999999998764100 00
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
........ ..+|...|.+++|+|+ +++|+++ .|+.|++||++.....
T Consensus 98 -----------------------------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 98 -----------------------------RRWNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp -----------------------------CSEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred -----------------------------cCcceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 00001111 2577889999999999 9999998 8999999999855432
Q ss_pred eee-----eecCCCccCCCCCceEEEEEcCC---CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 268 FNI-----VDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 268 ~~~-----~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
... ..........|...+.+++|+|+ + .++++++.|+.+.+|+...++.. .+..+. +
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~------------~ 212 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH--VAAKLP------------G 212 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE--EEEECC------------C
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee--eeeecC------------C
Confidence 111 00111122467889999999997 6 89999999999988887766421 123333 3
Q ss_pred cccceEEEEECCCC----CEEEEE-cCCeEEEEeccCCC-----------------------------------------
Q 011257 340 IIASISDIKFARNG----RHILSR-DYMTLKLWDINMDS----------------------------------------- 373 (490)
Q Consensus 340 h~~~i~~l~~sp~g----~~l~sg-~d~~i~iwd~~~~~----------------------------------------- 373 (490)
|...|++++|+|++ ++|+++ .|+.|++||++...
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 45889999999998 788887 46999999998521
Q ss_pred ----CceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 374 ----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 374 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+++..+.+|.. .|++++|+|++++|++++.||.|++|++.+++.
T Consensus 293 ~~~~~~~~~~~~h~~---------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 293 NLQVELLSEHDDHNG---------------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SEEEEEEEEECTTSS---------------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccEEEEEecccc---------------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 22222333322 367999999999999999999999999998764
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=7.3e-33 Score=266.11 Aligned_cols=293 Identities=16% Similarity=0.307 Sum_probs=211.6
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+|...|+|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence 56788999988 78899999999999999998765 346678888
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|.+++| ++.++++|+.||+|++||+.+++.......+. +.+. +++|+ +.
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--------~~v~-------~l~~~--~~-------- 224 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--------EAVL-------HLRFN--NG-------- 224 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--------SCEE-------EEECC--TT--------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC--------CcEE-------EEEEc--CC--------
Confidence 88999998 46799999999999999999987665544321 1111 34443 23
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++++.|+.|++||+ ..... ...... ..+|...|.+++| +++++++| .|+.|++||+++... ..
T Consensus 225 ----~l~s~s~dg~i~vwd~-~~~~~---~~~~~~-~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-~~-- 290 (435)
T 1p22_A 225 ----MMVTCSKDRSIAVWDM-ASPTD---ITLRRV-LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-VR-- 290 (435)
T ss_dssp ----EEEEEETTSCEEEEEC-SSSSC---CEEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EE--
T ss_pred ----EEEEeeCCCcEEEEeC-CCCCC---ceeeeE-ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-EE--
Confidence 7999999999999993 22111 111122 3789999999999 78899998 899999999985543 33
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+.+|...|.++.++ + .++++|+.||.|++||+++++. +..+..|. ..|.+++|
T Consensus 291 -----~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~------------~~v~~~~~-- 344 (435)
T 1p22_A 291 -----TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVLEGHE------------ELVRCIRF-- 344 (435)
T ss_dssp -----EEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECCCS------------SCEEEEEC--
T ss_pred -----EEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCE----EEEEeCCc------------CcEEEEEe--
Confidence 346789999999994 4 7999999999999999998764 34555443 78999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCC---------ceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCe
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSG---------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 421 (490)
++.+|++|+ ||.|++||+.. +. ++..+.+|... |++++| ++++|++|+.||.
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGR---------------VFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH-HTSTTSCTTTTEEEEECCCSSC---------------CCCEEE--CSSCEEECCSSSE
T ss_pred cCCEEEEEeCCCcEEEEECCC-CCCccccccchheeeccCCCCC---------------eEEEEe--CCCEEEEEeCCCE
Confidence 688999875 69999999975 33 56777777665 458888 7889999999999
Q ss_pred EEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 422 i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
|++||+.++... .......+...+.|.+
T Consensus 407 i~iwd~~~~~~~--~~~~~~~~~~~~~~~~ 434 (435)
T 1p22_A 407 ILIWDFLNDPAA--QAEPPRSPSRTYTYIS 434 (435)
T ss_dssp EEEEC-------------------------
T ss_pred EEEEECCCCCCc--ccCCCCCCccceeeec
Confidence 999999977552 2223334555555543
No 79
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.4e-33 Score=263.90 Aligned_cols=284 Identities=11% Similarity=0.122 Sum_probs=214.3
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe------EEEEeeeccCCCcCCCCCC
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGP 166 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~ 166 (490)
...+.+|. +.|++++|+| .+|++++.||.|++||+.+++ .......+ ...
T Consensus 9 ~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h--------~~~ 64 (397)
T 1sq9_A 9 ANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--------KSG 64 (397)
T ss_dssp EEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--------TTC
T ss_pred hhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecC--------CCc
Confidence 45577888 8899999985 599999999999999999876 22222211 112
Q ss_pred ccccccccCceEEecc----C---CccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccc-----cc
Q 011257 167 IFGSHVSAIPKSYMAN----G---GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-----DY 234 (490)
Q Consensus 167 ~~~~~~~~~~~~~s~~----g---~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~~ 234 (490)
+ .+++|+|+ | + +|++++.|+.|++|++...... .......+ ..| ..
T Consensus 65 v-------~~~~~~~~~~~~g~~~~------------~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~-~~~~~~~~~~ 122 (397)
T 1sq9_A 65 L-------HHVDVLQAIERDAFELC------------LVATTSFSGDLLFYRITREDET--KKVIFEKL-DLLDSDMKKH 122 (397)
T ss_dssp E-------EEEEEEEEEETTTEEEE------------EEEEEETTSCEEEEEEEECTTT--CCEEEEEE-CCSCTTGGGS
T ss_pred E-------EEEEEecccccCCcccc------------EEEEEcCCCCEEEEEccCCccc--ccccceee-cccccccCCC
Confidence 2 28899999 8 7 8999999999999994322210 00012222 566 58
Q ss_pred ceeEEEec----CCCCE-EEEe-cCCcEEEEEcCC------CCcee-e---eeecCCCccCCCCCceEEEEEcCCCCcEE
Q 011257 235 HINSISNN----SDGET-FISA-DDLRINLWNLEI------SNQSF-N---IVDVKPANMEDLTEVITSAEFHPTHCNML 298 (490)
Q Consensus 235 ~v~~i~~~----~~~~~-l~~~-~d~~i~~wd~~~------~~~~~-~---~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 298 (490)
.|.+++|+ |+++. |+++ .|+.|++||++. ..... . .+.........|...|.+++|+|++ +|
T Consensus 123 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l 200 (397)
T 1sq9_A 123 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LI 200 (397)
T ss_dssp CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EE
T ss_pred cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eE
Confidence 99999999 99999 9998 899999999985 22221 0 1100000014578899999999998 99
Q ss_pred EEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccc---ccceEEEEECCCCCEEEEE-cC---CeEEEEeccC
Q 011257 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILSR-DY---MTLKLWDINM 371 (490)
Q Consensus 299 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~l~~sp~g~~l~sg-~d---~~i~iwd~~~ 371 (490)
++++.||.|++||+++++. +..+... .+| ...|.+++|+|++++|+++ .| +.|++||+++
T Consensus 201 ~~~~~dg~i~i~d~~~~~~----~~~~~~~---------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~ 267 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRP----LYNFESQ---------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF 267 (397)
T ss_dssp EEECTTSEEEEEETTTTEE----EEEEECC---------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred EEEeCCCcEEEEECCCCce----eEEEecc---------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 9999999999999998754 3444440 013 3789999999999999997 56 8999999997
Q ss_pred CCCceeeeee-------------eccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEec
Q 011257 372 DSGPVATFQV-------------HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (490)
Q Consensus 372 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 438 (490)
++++..+.. |... |.+++|+|++++|++++.||.|++||+.+++. +..+.
T Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 330 (397)
T 1sq9_A 268 -GERIGSLSVPTHSSQASLGEFAHSSW---------------VMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLN 330 (397)
T ss_dssp -CCEEEEECBC--------CCBSBSSC---------------EEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEE
T ss_pred -CcccceeccCcccccccccccccCCc---------------EEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEe
Confidence 888888877 5443 56999999999999999999999999999977 67787
Q ss_pred ------cC---------------CCceEEEEEccCCC
Q 011257 439 ------AS---------------KNPMRRQVQTPSRP 454 (490)
Q Consensus 439 ------~~---------------~~~v~~~~~sp~~~ 454 (490)
.| ..+|.+++|+|++.
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 77 99999999999985
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=277.58 Aligned_cols=297 Identities=8% Similarity=0.018 Sum_probs=200.5
Q ss_pred cccccEEEEEECCC------CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccccee
Q 011257 33 QEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (490)
Q Consensus 33 ~h~~~V~~~~~s~d------g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (490)
.|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++....... +. .......+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-----------~~-~~~p~~~l~~h~------ 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-----------KM-CEKPSLTLSLAD------ 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-----------EC-CCSCSEEECCTT------
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-----------ee-ecCceEEEEcCC------
Confidence 46789999999997 5799999999999999997654210000 00 001123467777
Q ss_pred eeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCCCcCCCCCCccccccccCce--EEeccC
Q 011257 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPK--SYMANG 183 (490)
Q Consensus 107 ~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~g 183 (490)
..|++++|+| +..|++|+.||+|++||+.++. .......+ .+.+. ++ +|+|+|
T Consensus 267 ------~~v~sv~~s~---~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H--------~~~V~-------sv~~~~s~~g 322 (524)
T 2j04_B 267 ------SLITTFDFLS---PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH--------DSYIL-------SVSTAYSDFE 322 (524)
T ss_dssp ------TCEEEEEESS---SSEEEEEETTSEEEEEETTBCSSCSEEEECS--------SSCEE-------EEEEECCTTS
T ss_pred ------CCEEEEEecC---CCeEEEEeCCCEEEEEECCCCCCceEEeecc--------cccEE-------EEEEEcCCCC
Confidence 8899999986 2489999999999999998753 21222222 11222 45 567777
Q ss_pred -CccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc--ceeEEEecCCCCEEEEe-cCCcEEEE
Q 011257 184 -GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY--HINSISNNSDGETFISA-DDLRINLW 259 (490)
Q Consensus 184 -~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~-~d~~i~~w 259 (490)
. +|++++.|++|++||+ .. .++...+ .+|.. .|.+++|+|+++.++++ .|++|++|
T Consensus 323 ~~------------~laS~S~D~tvklWD~-~~------~~~~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw 382 (524)
T 2j04_B 323 DT------------VVSTVAVDGYFYIFNP-KD------IATTKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV 382 (524)
T ss_dssp CC------------EEEEEETTSEEEEECG-GG------HHHHCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred Ce------------EEEEeccCCeEEEEEC-CC------CCccccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence 5 7899999999999992 22 1122222 34432 47899999999999998 89999999
Q ss_pred EcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
|++..... . .+.+|...|++++|+|++ .+|++|+.||+|++||+..+. +..+..... ..
T Consensus 383 d~~~~~~~-~-------~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~-----~~~~~~~~~-------~~ 441 (524)
T 2j04_B 383 PSRAAFAV-H-------PLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRL-----LHGIKNSSA-------TQ 441 (524)
T ss_dssp ETTCTTCC-E-------EEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSST-----TTCC-------------C
T ss_pred ECcccccc-e-------eeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhh-----ccccccCcc-------ce
Confidence 99854432 2 346799999999999999 899999999999999986531 122111000 00
Q ss_pred cccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC---EEEEe
Q 011257 340 IIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG---RVATG 416 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---~l~s~ 416 (490)
+...+.+++|+|++..+.. .+ .+.+|+....+..+..+.+|... |.+++|+|+++ +||+|
T Consensus 442 ~~~~v~~v~~sp~g~~~~~-~~-~~~~~~~~~~g~~~~~l~gh~~~---------------V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 442 KSLRLWKWDYSIKDDKYRI-DS-SYEVYPLTVNDVSKAKIDAHGIN---------------ITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp CCCEEEECBCCSSSCEEEE-CC-CCCCCC-------------CCCS---------------CCCEEECCSTTTTTEEEEE
T ss_pred eeeEEEEeccCCCCCeEEc-cC-CceecccccCCcceeeecCCCce---------------EEEEECCCCCCccHHHHhh
Confidence 1135789999999985533 22 23344433126677788888765 56999999965 99999
Q ss_pred ecCCeEEEEecCC
Q 011257 417 SYSNLFRVFGCSE 429 (490)
Q Consensus 417 ~~dg~i~vw~~~~ 429 (490)
+.||.|+||++..
T Consensus 505 ~~~g~vrlw~l~~ 517 (524)
T 2j04_B 505 NSAGLLTLEYLSL 517 (524)
T ss_dssp CTTSEEEEEECSC
T ss_pred ccCceEEEEEccc
Confidence 9999999999883
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=250.49 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=216.8
Q ss_pred cccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccc
Q 011257 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (490)
++....+.+|. +.|++++| | ++.+|++++.||.|++||+.+++.......+. +.+
T Consensus 8 ~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--------~~v-- 62 (313)
T 3odt_A 8 YQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--------GFL-- 62 (313)
T ss_dssp CEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEEEEECS--------SCE--
T ss_pred HHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--------ccE--
Confidence 34567788898 88999999 6 45699999999999999999887666555432 122
Q ss_pred cccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEE
Q 011257 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (490)
Q Consensus 170 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (490)
.+++|+|+++ ++++++.|+.+++|++ .... .......+ .+|...|.+++| +++.++
T Consensus 63 -----~~~~~~~~~~------------~l~~~~~dg~i~~~~~-~~~~---~~~~~~~~-~~~~~~i~~~~~--~~~~l~ 118 (313)
T 3odt_A 63 -----NSVCYDSEKE------------LLLFGGKDTMINGVPL-FATS---GEDPLYTL-IGHQGNVCSLSF--QDGVVI 118 (313)
T ss_dssp -----EEEEEETTTT------------EEEEEETTSCEEEEET-TCCT---TSCC-CEE-CCCSSCEEEEEE--ETTEEE
T ss_pred -----EEEEECCCCC------------EEEEecCCCeEEEEEe-eecC---CCCcccch-hhcccCEEEEEe--cCCEEE
Confidence 3889999998 8999999999999993 3222 12223333 788999999999 577899
Q ss_pred Ee-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
++ .|+.|++||. .. ... .+..|...+.+++|+| ++ ..+++++.||.|++||.... ...+..
T Consensus 119 ~~~~d~~i~~~d~--~~-~~~-------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~ 181 (313)
T 3odt_A 119 SGSWDKTAKVWKE--GS-LVY-------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFSG 181 (313)
T ss_dssp EEETTSEEEEEET--TE-EEE-------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEECS
T ss_pred EEeCCCCEEEEcC--Cc-EEE-------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEec
Confidence 88 8999999992 22 222 3467899999999998 66 89999999999999994432 233433
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
. |...+.+++|+|++. ++++ .|+.|++||+++ ++++..+..|... |.+++|
T Consensus 182 ~-----------~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~ 233 (313)
T 3odt_A 182 I-----------HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKL 233 (313)
T ss_dssp S-----------CSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE
T ss_pred c-----------CcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEE
Confidence 1 337899999999998 5555 679999999997 8888888888765 569999
Q ss_pred cCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 407 s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
+|++ .|++++.||.|++||+.+++. ...+..|..+|.+++|+|++....
T Consensus 234 ~~~~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 234 LPNG-DIVSCGEDRTVRIWSKENGSL-KQVITLPAISIWSVDCMSNGDIIV 282 (313)
T ss_dssp CTTS-CEEEEETTSEEEEECTTTCCE-EEEEECSSSCEEEEEECTTSCEEE
T ss_pred ecCC-CEEEEecCCEEEEEECCCCce-eEEEeccCceEEEEEEccCCCEEE
Confidence 9999 588999999999999999987 688899999999999999998443
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4e-33 Score=263.46 Aligned_cols=295 Identities=12% Similarity=0.181 Sum_probs=218.7
Q ss_pred ccccccccCCcccceeeeeeeccceeEEEEeecCCC-cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccc
Q 011257 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (490)
.....+.+|. ..|++++|+| ++ .+|++++.||.|++||+.+++.........+ .+.+
T Consensus 64 ~~~~~~~~h~------------~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h------~~~v-- 121 (383)
T 3ei3_B 64 KLHRTASPFD------------RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGP------GDAI-- 121 (383)
T ss_dssp EEEEEECCCS------------SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCST------TCBE--
T ss_pred ceEEeccCCC------------CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCc------CCce--
Confidence 3445566676 8899999997 44 6999999999999999998876655543211 1222
Q ss_pred cccccCceEEec-cCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeee--ccccccceeEEEecCCCC
Q 011257 170 SHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGE 246 (490)
Q Consensus 170 ~~~~~~~~~~s~-~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~ 246 (490)
.+++|+| ++. ++++++.|+.|++|| +.. .....+ ...|...|.+++|+|+++
T Consensus 122 -----~~~~~~~~~~~------------~l~s~~~d~~i~iwd-~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~ 176 (383)
T 3ei3_B 122 -----TGMKFNQFNTN------------QLFVSSIRGATTLRD-FSG-------SVIQVFAKTDSWDYWYCCVDVSVSRQ 176 (383)
T ss_dssp -----EEEEEETTEEE------------EEEEEETTTEEEEEE-TTS-------CEEEEEECCCCSSCCEEEEEEETTTT
T ss_pred -----eEEEeCCCCCC------------EEEEEeCCCEEEEEE-CCC-------CceEEEeccCCCCCCeEEEEECCCCC
Confidence 3889999 566 899999999999999 221 111222 134557899999999999
Q ss_pred EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 247 ~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
+|+++ .|+.|++||++ ... .. .+.+|...|.+++|+|++..+|++++.|+.|++||+++.+.....+..+
T Consensus 177 ~l~~~~~d~~i~i~d~~-~~~-~~-------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 177 MLATGDSTGRLLLLGLD-GHE-IF-------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp EEEEEETTSEEEEEETT-SCE-EE-------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred EEEEECCCCCEEEEECC-CCE-EE-------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence 99999 89999999995 333 22 3567999999999999993399999999999999998743221112222
Q ss_pred ccccCCCccccccccccceEEEEECC-CCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccc----ccccccCCCcc
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK----LCDLYENDSIF 399 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 399 (490)
+|...|.+++|+| ++++|++++ |+.|++||+++ ++.+..+..|...... +...+.. ..
T Consensus 248 -------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~ 311 (383)
T 3ei3_B 248 -------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHP--MY 311 (383)
T ss_dssp -------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECS--SS
T ss_pred -------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccC--CC
Confidence 2447899999999 999999975 69999999997 7777777776532110 0000000 01
Q ss_pred ceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc--CCCceEEEEEccCCCCCCCCc
Q 011257 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 400 ~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~~~~~ 460 (490)
.+..++|+|++++ +|+.||.|++||+.+++. +..+.+ |...+..++|+|+++..+.++
T Consensus 312 ~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 312 DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp SEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-EEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred CceEEEecCCccc--ccCCCCeEEEEecCCCce-eeeecCCCCCceEEEEEEecCccEEEEec
Confidence 2345778888877 888999999999999987 577776 567788889999999776554
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.9e-33 Score=282.05 Aligned_cols=276 Identities=15% Similarity=0.215 Sum_probs=210.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-----EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
+.|++|+|+|+ ++.+|++|+.|++|++|++.... .......+ .+.+ .+++|+|+|+
T Consensus 383 ~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--------~~~v-------~~v~~s~~g~--- 443 (694)
T 3dm0_A 383 DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--------SHFV-------EDVVLSSDGQ--- 443 (694)
T ss_dssp SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--------SSCE-------EEEEECTTSS---
T ss_pred ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--------CCcE-------EEEEECCCCC---
Confidence 99999999873 35799999999999999997532 22222222 1122 2789999999
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
+|++++.|++|++||+ . ...+.+.+ .+|...|.+++|+|+++.|++| .|+.|++||... ..
T Consensus 444 ---------~l~sgs~Dg~v~vwd~-~------~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~-~~ 505 (694)
T 3dm0_A 444 ---------FALSGSWDGELRLWDL-A------AGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-EC 505 (694)
T ss_dssp ---------EEEEEETTSEEEEEET-T------TTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CE
T ss_pred ---------EEEEEeCCCcEEEEEC-C------CCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 8999999999999992 1 12333444 7899999999999999999999 899999999863 32
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
...+. ....+|...|.+++|+|++. ..|++++.|++|++||+++++. ...+.+ |...|+
T Consensus 506 ~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----~~~~~~------------h~~~v~ 565 (694)
T 3dm0_A 506 KYTIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----RSTLAG------------HTGYVS 565 (694)
T ss_dssp EEEEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----EEEECC------------CSSCEE
T ss_pred ceeec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----EEEEcC------------CCCCEE
Confidence 22221 13467899999999999862 4799999999999999998653 244444 448899
Q ss_pred EEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEE
Q 011257 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~v 424 (490)
+++|+|++++|++|+ |+.|++||+.+ ++.+..+..+.. |.+++|+|++.+|++++ |+.|+|
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~~~sp~~~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV----------------IHALCFSPNRYWLCAAT-EHGIKI 627 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC----------------EEEEEECSSSSEEEEEE-TTEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc----------------EEEEEEcCCCcEEEEEc-CCCEEE
Confidence 999999999999975 69999999997 776666554321 45999999999888765 566999
Q ss_pred EecCCCceeeeEeccCC-------------------CceEEEEEccCCCCCCCCccCcc
Q 011257 425 FGCSEGSAESTTLEASK-------------------NPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~-------------------~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
||+.+++. +..+..+. ..+.+++||||+.....++.++.
T Consensus 628 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 628 WDLESKSI-VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EETTTTEE-EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EECCCCCC-hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99998876 34443321 23789999999998877665544
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.1e-33 Score=260.07 Aligned_cols=300 Identities=14% Similarity=0.203 Sum_probs=220.3
Q ss_pred cccccccEEEEEECCC---CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~d---g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
...|.+.|++++|+|+ |++||+|+.||.|++||+.+.... ....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------------------IPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------------------EEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------------------eEEEecccc-------
Confidence 3479999999999999 699999999999999999863211 225577788
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEE--eccCCc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY--MANGGC 185 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~g~~ 185 (490)
..|++++|+| ++.+|++++.||.|++||+.+++......+.. .+ .+++| +|++.
T Consensus 87 -----~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~v-------~~~~~~~~~~~~- 142 (368)
T 3mmy_A 87 -----GPVLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA---------PV-------KTIHWIKAPNYS- 142 (368)
T ss_dssp -----SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEECSS---------CE-------EEEEEEECSSCE-
T ss_pred -----CCEEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCceeeccccC---------ce-------EEEEEEeCCCCC-
Confidence 8899999997 67799999999999999999998766544321 22 27788 77877
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
++++++.|+.|++||+ ... +....+ ..+ ..+.++.+.+ ..++++ .++.+.+|+++..
T Consensus 143 -----------~l~~~~~dg~i~vwd~-~~~------~~~~~~-~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 143 -----------CVMTGSWDKTLKFWDT-RSS------NPMMVL-QLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQ 200 (368)
T ss_dssp -----------EEEEEETTSEEEEECS-SCS------SCSEEE-ECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSS
T ss_pred -----------EEEEccCCCcEEEEEC-CCC------cEEEEE-ecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccc
Confidence 8999999999999993 221 222222 223 3455555554 466666 8999999999866
Q ss_pred CceeeeeecCCCccCCCCCceEEEEEcCCCCcE----EEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccc
Q 011257 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM----LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (490)
....... ...+...+.++.+.++. .. +++++.||.|++||++..... .....+..+...........|
T Consensus 201 ~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 201 PSEFRRI------ESPLKHQHRCVAIFKDK-QNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp CEEEEEC------CCSCSSCEEEEEEEECT-TSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEE
T ss_pred cchhhhc------cccccCCCceEEEcccC-CCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeeccccccccccc
Confidence 5544432 12334555666666554 33 999999999999999986321 123555555433223333445
Q ss_pred ccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 341 IASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 341 ~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
..+|++++|+|++++|+++ .||.|++||+.+ ++++..+..|... |.+++|+|++++|++++.|
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA-RTKLKTSEQLDQP---------------ISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSC---------------EEEEEECTTSSCEEEEECC
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCC-CcEEEEecCCCCC---------------ceEEEECCCCCeEEEEecc
Confidence 5589999999999999997 569999999997 8888888877765 5699999999999999998
Q ss_pred CeEEEEecC
Q 011257 420 NLFRVFGCS 428 (490)
Q Consensus 420 g~i~vw~~~ 428 (490)
+..+.|++-
T Consensus 337 ~~~~~~~~~ 345 (368)
T 3mmy_A 337 DWSKGHEFY 345 (368)
T ss_dssp CSTTCGGGC
T ss_pred ccccccccc
Confidence 865555544
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.5e-33 Score=261.18 Aligned_cols=297 Identities=12% Similarity=0.088 Sum_probs=199.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCc-------CeEEEEEccCCe------EEEEeeeccCCCcCCCCCCccccccccCceEE
Q 011257 113 EKINKIRWCQSANSALYLLSTND-------KTIKLWKVQEKK------VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~d-------g~i~lwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (490)
-+|++++|+| ++.+|++|+.| +.|++|++.... ............ . .. .+++
T Consensus 15 ~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~----~-------~~--v~s~ 79 (365)
T 4h5i_A 15 YPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDN----D-------DS--PTAI 79 (365)
T ss_dssp SCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTT----S-------CC--CCEE
T ss_pred CCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCC----C-------Cc--eEEE
Confidence 5799999997 67789988654 369999987543 111111111100 0 01 2344
Q ss_pred eccCCcccccccc-CCCCccccCCCCCcEEEeeeecccccccccceeeee-ccccccceeEEEecCCCCEEEEe---cCC
Q 011257 180 MANGGCGERNFGC-ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA---DDL 254 (490)
Q Consensus 180 s~~g~~~~~~~~~-~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~---~d~ 254 (490)
++++..+ .... .+...|++++.|+.+++|++....+........... ...+...+.+++|+|||++++++ .|+
T Consensus 80 ~~~~~~~--~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 80 DASKGII--LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp EEETTEE--EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred EeCCCEE--EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 4554421 1111 223367788899999999943222211111111111 13445668899999999998753 589
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
+|++||+++...... + .|...|.+++|+|+| +++++++.++ +++|+..+++... ...
T Consensus 158 ~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~~--~~~---------- 214 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCIA--RKT---------- 214 (365)
T ss_dssp EEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEEE--EEC----------
T ss_pred EEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEecccee-EEEEEeccCccee--eee----------
Confidence 999999985544332 2 367789999999999 8999988554 6666666654321 011
Q ss_pred ccccccccceEEEEECCCCCEEEEEc-CC----eEEEEeccCCCCc----eeeeeeeccccccccccccCCCccceeeEE
Q 011257 335 SFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~g~~l~sg~-d~----~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
..+|...|.+++|+|+++++++++ ++ .+++|++.. ... ...+.+|... |++++
T Consensus 215 --~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~---------------V~~~~ 276 (365)
T 4h5i_A 215 --DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRFKG---------------ITSMD 276 (365)
T ss_dssp --CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSCSC---------------EEEEE
T ss_pred --cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCCCC---------------eEeEE
Confidence 123447899999999999999874 43 688898875 322 1233344333 66999
Q ss_pred EcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 406 ~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
|+|||++||+|+.|+.|+|||++++++....+.+|..+|++++||||++..+.++.++..+-
T Consensus 277 ~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 277 VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999998843446899999999999999999888877765443
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=269.93 Aligned_cols=315 Identities=12% Similarity=0.146 Sum_probs=223.6
Q ss_pred EECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-ccCCcccceeeeeeeccceeEEEE
Q 011257 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRW 120 (490)
Q Consensus 42 ~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~v~~ 120 (490)
.|+|+++.+++++ .|+.. .+.+..+ .+|. +.|++++|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~------------------------g~~~~~~~~~h~------------~~V~~~~~ 71 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR------------------------GKLIATLMENEP------------NSITSSAV 71 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC------------------------CCEEEEECTTTT------------SCEEEEEE
T ss_pred hcCCccccccccc------ccccc------------------------ceEEeeeccCCC------------CceEEEEE
Confidence 4788888888765 25532 2345667 7888 88999999
Q ss_pred eecCCCcEEEEEeCcCeEEEEEccC---CeEE-EEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 121 CQSANSALYLLSTNDKTIKLWKVQE---KKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 121 ~p~~~~~~l~~~~~dg~i~lwd~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
+| .++.+|++|+.||+|++||+.+ +... ...... +.+.+ .+++|+|+++
T Consensus 72 s~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-------h~~~v-------~~~~~~~~~~------------ 124 (437)
T 3gre_A 72 SP-GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-------CSSTV-------TQITMIPNFD------------ 124 (437)
T ss_dssp EC-SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-------CSSCE-------EEEEECTTSS------------
T ss_pred CC-CCCCEEEEecCCceEEEeECcccccCcccceeeecc-------CCCCE-------EEEEEeCCCC------------
Confidence 96 2466999999999999999976 3211 011100 11222 3889999988
Q ss_pred ccccCCCCCcEEEeeeecccccccc----cceeeeec-cc--cccceeEEE--ecCCCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLV----AGCRRIYA-HA--HDYHINSIS--NNSDGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~----~~~~~~~~-~~--~~~~v~~i~--~~~~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
++++++.|+.|++||+......... ......+. .. +...+.++. +++++.+|+++ .|+.|++||+++...
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 8999999999999994211111000 01111111 11 456667776 66889999999 899999999985544
Q ss_pred eeeeeecCCCccCC--CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 267 SFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 267 ~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
... +.. |...|++++|+|++ .+|++|+.||.|++||+++++. +..+.. .|..+|
T Consensus 205 ~~~--------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~-----------~~~~~v 260 (437)
T 3gre_A 205 LQI--------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVL----IRSWSF-----------GDHAPI 260 (437)
T ss_dssp EEE--------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEE----EEEEBC-----------TTCEEE
T ss_pred eEE--------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccE----EEEEec-----------CCCCce
Confidence 332 233 78999999999999 9999999999999999998654 244331 123689
Q ss_pred EEEEEC----CCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccccccc-----------CCCccceeeEEEcC
Q 011257 345 SDIKFA----RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-----------NDSIFDKFECCLSG 408 (490)
Q Consensus 345 ~~l~~s----p~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~s~ 408 (490)
.+++|+ |++++|++|+ |+.|++||+++ ++.+..+.+|............ ......|++++|+
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS- 338 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-
Confidence 999665 4688999985 69999999997 8888888877644332211111 0123347799999
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEecc-------------------------------------CCCceEEEEEcc
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------------------------------SKNPMRRQVQTP 451 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~sp 451 (490)
++++|++|+.||.|++||+.+++. ...+.+ |.+.|++++|++
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~ 417 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNELSS-SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE 417 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCGGG-CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred CceEEEecCCCCeEEEEECCCccc-ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence 889999999999999999999876 355544 788899999998
Q ss_pred C
Q 011257 452 S 452 (490)
Q Consensus 452 ~ 452 (490)
+
T Consensus 418 ~ 418 (437)
T 3gre_A 418 V 418 (437)
T ss_dssp S
T ss_pred c
Confidence 8
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=255.21 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=220.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|++++|+| ++.+|++++.||.|++||+.+++.......+. +.+ .+++|+|+++
T Consensus 33 ~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~--------~~v-------~~~~~~~~~~-------- 87 (369)
T 3zwl_B 33 RPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLGTLDGHT--------GTI-------WSIDVDCFTK-------- 87 (369)
T ss_dssp SCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEEEECCCS--------SCE-------EEEEECTTSS--------
T ss_pred ceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcC--------CcE-------EEEEEcCCCC--------
Confidence 8899999997 67799999999999999999987766554331 122 2789999998
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC-----CcEEEEEcCCCCc
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLEISNQ 266 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~i~~wd~~~~~~ 266 (490)
++++++.|+.|++||+ . ..++...+ .+...+.+++|+|++++++++ .+ +.|++||+.....
T Consensus 88 ----~l~s~~~dg~i~iwd~-~------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 88 ----YCVTGSADYSIKLWDV-S------NGQCVATW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp ----EEEEEETTTEEEEEET-T------TCCEEEEE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred ----EEEEEeCCCeEEEEEC-C------CCcEEEEe--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 8999999999999992 2 12233333 267889999999999999998 77 9999999986543
Q ss_pred eeeeeecC---CCccCCCCC--ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 267 SFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 267 ~~~~~~~~---~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
........ ...+..|.. .+.+++|+|++ ++|++++.||.|++||+++.... +..+..+ .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~------------~ 218 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEY---VDSIDLH------------E 218 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEE---EEEEECC------------S
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEe---EEEEecC------------C
Confidence 22211110 012334454 89999999999 89999999999999999983222 3444444 3
Q ss_pred cceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 342 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
..|.+++|+|++++|++++ |+.|++||+++ ++.+..+.... . +..++|+|+++++++++.++
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDC-P---------------LNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSS-C---------------EEEEEECSSSSEEEEEECCC
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecCCC-C---------------ceeEEecCCCceEEEeecCC
Confidence 7899999999999999975 69999999997 77777776322 2 45899999999999999988
Q ss_pred --------------eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 421 --------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 421 --------------~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
.+++||+.+++. +..+.+|...|.+++|+|+++..+.++.++.
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp -------------CEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceEEEEecCCCcceeEEEecCCCcc-hhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 899999999987 6889999999999999999987776655443
No 88
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.1e-32 Score=263.42 Aligned_cols=309 Identities=14% Similarity=0.130 Sum_probs=221.0
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (490)
...|+.... ........|.+.|++++|+|++ +|++|+.||+|++||+.+++ ..
T Consensus 144 i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----------------------~~ 196 (464)
T 3v7d_B 144 IRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----------------------CT 196 (464)
T ss_dssp EEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----------------------EE
T ss_pred EEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----------------------EE
Confidence 445665541 1122234699999999999988 99999999999999998765 24
Q ss_pred cccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCC--C--CCC---
Q 011257 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA--G--NGP--- 166 (490)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~--~--~~~--- 166 (490)
..+.+|. ..|.+++|+|.+++.++++++.||+|++||+.++................ . ...
T Consensus 197 ~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 197 HVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp EEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred EEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 5677888 88999999987778899999999999999998765332211110000000 0 000
Q ss_pred ccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC
Q 011257 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (490)
Q Consensus 167 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 246 (490)
....+ .....++++++. ++++++.|+.|++||+ . ..++...+ .+|...|.+++|+|+++
T Consensus 265 ~~~~~-~~~v~~~~~~~~------------~l~~~~~d~~i~vwd~-~------~~~~~~~~-~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 265 VLRGH-MASVRTVSGHGN------------IVVSGSYDNTLIVWDV-A------QMKCLYIL-SGHTDRIYSTIYDHERK 323 (464)
T ss_dssp EECCC-SSCEEEEEEETT------------EEEEEETTSCEEEEET-T------TTEEEEEE-CCCSSCEEEEEEETTTT
T ss_pred EccCc-cceEEEEcCCCC------------EEEEEeCCCeEEEEEC-C------CCcEEEEe-cCCCCCEEEEEEcCCCC
Confidence 00000 001223455555 8999999999999992 2 23334444 78999999999999999
Q ss_pred EEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 247 ~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
.+++| .|+.|++||+++.. ... .+.+|...|.+++|++ .+|++++.||.|++||++++... ..+
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~-~~~-------~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~----~~~ 388 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGE-LMY-------TLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRK----FSY 388 (464)
T ss_dssp EEEEEETTSCEEEEETTTTE-EEE-------EECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE----EEE
T ss_pred EEEEEeCCCcEEEEECCCCc-EEE-------EEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCcee----eee
Confidence 99999 89999999998543 333 3578999999999983 68999999999999999986532 121
Q ss_pred ccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceee-eeeeccccccccccccCCCccceeeE
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
. |...+..++|+|++++|++|+|+.|++||+.+ ++.+.. +..+... |+++
T Consensus 389 ~-------------~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~-g~~~~~~~~~~~~~---------------v~~v 439 (464)
T 3v7d_B 389 H-------------HTNLSAITTFYVSDNILVSGSENQFNIYNLRS-GKLVHANILKDADQ---------------IWSV 439 (464)
T ss_dssp E-------------CTTCCCEEEEEECSSEEEEEETTEEEEEETTT-CCEEESCTTTTCSE---------------EEEE
T ss_pred c-------------CCCCccEEEEEeCCCEEEEecCCeEEEEECCC-CcEEehhhccCCCc---------------EEEE
Confidence 1 12567888999999999999999999999997 777765 3334332 6699
Q ss_pred EEcCCCCEEEEeecCCeEEEEec
Q 011257 405 CLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 405 ~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
+|+ ++.++++++.||.+.+|-+
T Consensus 440 ~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 440 NFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEE
T ss_pred Eec-CCEEEEEEEeCCeEEEEEe
Confidence 997 4455666667776665543
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-32 Score=258.38 Aligned_cols=296 Identities=14% Similarity=0.178 Sum_probs=214.2
Q ss_pred cceeEEEEeec--CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 113 ~~V~~v~~~p~--~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++++|+|. .....+++++.++.|++||+.+++........... ...+.+ .+++|+|++..
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v-------~~~~~~~~~~~----- 83 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENF-------YTCAWTYDSNT----- 83 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCE-------EEEEEEECTTT-----
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcE-------EEEEeccCCCC-----
Confidence 88999999984 12346777777789999999976544433322110 011222 38899999430
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCcee
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~~ 268 (490)
...++++++.|+.|++||+ .. .+....+ .+|...|.+++|+| ++++|+++ .|+.|++||++.... .
T Consensus 84 ---~~~~l~~~~~dg~i~v~d~-~~------~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~ 151 (366)
T 3k26_A 84 ---SHPLLAVAGSRGIIRIINP-IT------MQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-V 151 (366)
T ss_dssp ---CCEEEEEEETTCEEEEECT-TT------CCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-E
T ss_pred ---CCCEEEEecCCCEEEEEEc-hh------ceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-E
Confidence 0117999999999999992 21 2333343 68999999999999 89999999 899999999985443 3
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccc----------------cCCC
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ----------------EAPG 332 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~ 332 (490)
..+ ..+.+|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+... ....
T Consensus 152 ~~~----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 152 AIF----GGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMM----NAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp EEE----CSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHH----HHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred EEe----cccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccc----cccceeEEecCCCCcccccceeeccC
Confidence 321 1236799999999999999 99999999999999999987532 111110 0000
Q ss_pred ccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCc--------------eeeeeeeccccccccccccCCC
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP--------------VATFQVHEHLRPKLCDLYENDS 397 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 397 (490)
.......|...|.+++|+ +++|++++ |+.|++||+.+ ... +..+..|...
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 287 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGK-MEDDIDKIKPSESNVTILGRFDYSQCD------------ 287 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESS-TTCCGGGCCTTCCCEEEEEEEECSSCC------------
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCC-ccccccccccCCcchheeccccccCCc------------
Confidence 111223477899999998 77888875 69999999986 432 3444444433
Q ss_pred ccceeeEEEcCC--CCEEEEeecCCeEEEEecCCCce---eeeEeccC--CCceEEEEEccCCCCCCCCccC
Q 011257 398 IFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSA---ESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 398 ~~~v~~~~~s~d--~~~l~s~~~dg~i~vw~~~~~~~---~~~~~~~~--~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
|++++|+|+ +++|++|+.||.|++||+.+++. ....+..| ..+|++++|+|+++..+.++.+
T Consensus 288 ---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 288 ---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp ---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred ---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 458999999 99999999999999999998764 23467777 7999999999999876655443
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=255.29 Aligned_cols=273 Identities=13% Similarity=0.177 Sum_probs=204.7
Q ss_pred cceeEEEEeecCCCc-EEEEEeC---cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEecc---CCc
Q 011257 113 EKINKIRWCQSANSA-LYLLSTN---DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN---GGC 185 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~-~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~~ 185 (490)
..|++++|+| ++. ++++++. |+.|++||+.+++......... ...+ .+++|+|+ |.
T Consensus 19 ~~v~~~~~~p--~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~-------~~~v-------~~~~~~~~~~~~~- 81 (357)
T 3i2n_A 19 YTVFDCKWVP--CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK-------AKPI-------KCGTFGATSLQQR- 81 (357)
T ss_dssp SCEEEEEECT--TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEE-------SSCE-------EEEECTTCCTTTC-
T ss_pred CceEEEEEcC--CCceEEEecCccCCCcEEEEEeCCCCcccceeeecc-------cCcE-------EEEEEcCCCCCCc-
Confidence 8899999997 443 4455665 9999999999987655443221 1122 27889998 46
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEE------EecCCCCEEEEe-cCCcEEE
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI------SNNSDGETFISA-DDLRINL 258 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i------~~~~~~~~l~~~-~d~~i~~ 258 (490)
++++++.|+.|++||+ .... .....+ .+|...|.++ +|+|+++.|+++ .|+.|++
T Consensus 82 -----------~l~~~~~dg~i~iwd~-~~~~-----~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 82 -----------YLATGDFGGNLHIWNL-EAPE-----MPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp -----------CEEEEETTSCEEEECT-TSCS-----SCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred -----------eEEEecCCCeEEEEeC-CCCC-----ccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 8999999999999993 2211 122333 6899999999 457899999999 8999999
Q ss_pred EEcCCCCceeeeeecCCCccCCCCCceEEEE----EcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
||++........+.. ....+...+.+++ |+|++ .+|++++.||.|++||+++++.. ....
T Consensus 144 wd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~-----~~~~------- 207 (357)
T 3i2n_A 144 WDPRQKDDPVANMEP---VQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR-----WETN------- 207 (357)
T ss_dssp ECTTSCSSCSEEECC---CTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE-----EEEE-------
T ss_pred EeCCCCCCcceeccc---cCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee-----eecC-------
Confidence 999866534333211 0111244788888 78898 99999999999999999987632 2222
Q ss_pred ccccccccceEEEEECC---CCCEEEEEc-CCeEEEEeccCCCCceeeee-----eeccccccccccccCCCccceeeEE
Q 011257 335 SFFTEIIASISDIKFAR---NGRHILSRD-YMTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp---~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
|...|.+++|+| ++.+|++++ |+.|++||++. ++++..+. +|... |++++
T Consensus 208 -----~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~~~ 266 (357)
T 3i2n_A 208 -----IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQVR 266 (357)
T ss_dssp -----CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEEEE
T ss_pred -----CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEEEE
Confidence 337899999999 999999975 69999999986 55555444 45443 56999
Q ss_pred EcCCCC-EEEEeecCCeEEEEecCCCce------------------eeeEeccCCCceEEEEEccCCCCCC
Q 011257 406 LSGDGG-RVATGSYSNLFRVFGCSEGSA------------------ESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 406 ~s~d~~-~l~s~~~dg~i~vw~~~~~~~------------------~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
|+|+++ +|++++.||.|++||+.++.. .+..+.+|..+|.+++|+|+++..+
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 999999 899999999999999986532 3567889999999999999998776
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.1e-32 Score=245.66 Aligned_cols=238 Identities=16% Similarity=0.195 Sum_probs=185.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|++++|+| ++.+|++|+.|++|++||+.+....
T Consensus 10 ~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~~~------------------------------------------- 44 (297)
T 2pm7_B 10 EMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGETHK------------------------------------------- 44 (297)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSCBC-------------------------------------------
T ss_pred CceEEEEECC--CCCEEEEEeCCCEEEEEecCCCCcE-------------------------------------------
Confidence 8899999996 6789999999999999998643100
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCc-ee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ-SF 268 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~-~~ 268 (490)
+... +.+|...|.+++|+++ +++|++| .|++|++||++.... ..
T Consensus 45 -------------------------------~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 45 -------------------------------LIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92 (297)
T ss_dssp -------------------------------CCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred -------------------------------EEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence 0011 2688899999999864 8999999 899999999985431 11
Q ss_pred eeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
. .+.+|...|.+++|+|+ + .+|++++.|++|++||++++.... ...+ .+|...|.+
T Consensus 93 ~-------~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--~~~~------------~~h~~~v~~ 150 (297)
T 2pm7_B 93 A-------VHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--PIII------------DAHAIGVNS 150 (297)
T ss_dssp E-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--CEEE------------ECCSSCEEE
T ss_pred E-------EeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--eeee------------ecccCccce
Confidence 1 34678999999999997 6 899999999999999998753210 1223 345588999
Q ss_pred EEECCC-------------CCEEEEE-cCCeEEEEeccCCCC----ceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 347 IKFARN-------------GRHILSR-DYMTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 347 l~~sp~-------------g~~l~sg-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
++|+|+ +++|++| .|++|++||++. +. ....+.+|... |.+++|+|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp 214 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSP 214 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECC
Confidence 999997 5789987 469999999986 44 45567777765 56999999
Q ss_pred CC---CEEEEeecCCeEEEEecCCCce--eeeEe--ccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 409 DG---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 409 d~---~~l~s~~~dg~i~vw~~~~~~~--~~~~~--~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
++ ++|++++.|+.|+|||++++.. ....+ ..|...|.+++|+|+++..+.++.++..
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v 278 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 85 8999999999999999987531 12233 5678999999999999988777665543
No 92
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-31 Score=252.45 Aligned_cols=262 Identities=13% Similarity=0.120 Sum_probs=195.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
++|++++|+| ++.+|++++.|+.|++||+.+++......+..+ .+.+ ..++|+|+++
T Consensus 9 ~~i~~~~~s~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h------~~~v-------~~~~~~~~~~-------- 65 (372)
T 1k8k_C 9 EPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH------NGQV-------TGVDWAPDSN-------- 65 (372)
T ss_dssp SCCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEEEEEEEECC------SSCE-------EEEEEETTTT--------
T ss_pred CCeEEEEECC--CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC------CCcc-------cEEEEeCCCC--------
Confidence 7899999996 677999999999999999999863333333221 1122 3889999998
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++++.|+.|++||+ ...+. ... .....|...|.+++|+|++++|+++ .|+.|++||++.........
T Consensus 66 ----~l~~~~~dg~i~vwd~-~~~~~----~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 66 ----RIVTCGTDRNAYVWTL-KGRTW----KPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ----EEEEEETTSCEEEEEE-ETTEE----EEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ----EEEEEcCCCeEEEEEC-CCCee----eee-EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 8999999999999993 22111 011 1125788899999999999999999 89999999998655321111
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccc--cCCCccccccccccceEEEEE
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ--EAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~l~~ 349 (490)
....+|...|.+++|+|++ .+|++++.||.|++||++............... ........+.+|...|.+++|
T Consensus 136 ----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (372)
T 1k8k_C 136 ----HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210 (372)
T ss_dssp ----EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred ----eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence 0235688999999999999 999999999999999986432110000000000 000111223456689999999
Q ss_pred CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 350 sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
+|++++|++++ |+.|++||+++ ++++..+..|... |.+++|+|++++|++| .|+.|++|++.
T Consensus 211 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 211 SANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 99999999975 69999999997 8888888877654 5699999999998887 89999999998
Q ss_pred C
Q 011257 429 E 429 (490)
Q Consensus 429 ~ 429 (490)
+
T Consensus 274 ~ 274 (372)
T 1k8k_C 274 S 274 (372)
T ss_dssp T
T ss_pred C
Confidence 7
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=281.60 Aligned_cols=257 Identities=13% Similarity=0.208 Sum_probs=202.3
Q ss_pred cccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeee
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~ 110 (490)
...|.+.|++++|+|+|++||+|+.||.|+|||+.++. ......+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------~~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------HKLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------------EEEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------------CccceeccCCc----------
Confidence 34799999999999999999999999999999997432 12356678888
Q ss_pred eccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
+.|++++|+|..++.+|++++.||.|++||+.+++......
T Consensus 54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------- 94 (753)
T 3jro_A 54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 94 (753)
T ss_dssp --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-------------------------------------
Confidence 88999999986557899999999999999998875322111
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
..+|...|.+++|+|+ ++.+++| .||.|++||++.....
T Consensus 95 --------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 95 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred --------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 2467788999999999 9999999 8999999999865332
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCC-------------CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcc
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 334 (490)
... .+.+|...|.+++|+|. + ..|++|+.||.|++||++++.........+.
T Consensus 137 ~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-------- 201 (753)
T 3jro_A 137 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-------- 201 (753)
T ss_dssp CCE------EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEEEEEC--------
T ss_pred cee------EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceeeeeec--------
Confidence 221 34678999999999994 6 8999999999999999987643222223333
Q ss_pred ccccccccceEEEEECCC---CCEEEEEc-CCeEEEEeccCCCC-----ceeeeeeeccccccccccccCCCccceeeEE
Q 011257 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSG-----PVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 335 ~~~~~h~~~i~~l~~sp~---g~~l~sg~-d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
+|...|++++|+|+ +++|++++ ||.|++||+.. +. .+.....|... |++++
T Consensus 202 ----~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~---------------v~~l~ 261 (753)
T 3jro_A 202 ----GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-EQGPWKKTLLKEEKFPDV---------------LWRAS 261 (753)
T ss_dssp ----CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS-SSSCCBCCBSSSSCCSSC---------------CCCEE
T ss_pred ----CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC-CCCcceeEEeccCCCCCc---------------eEEEE
Confidence 34589999999999 89999975 69999999986 32 11111222222 56999
Q ss_pred EcCCCCEEEEeecCCeEEEEecCCC
Q 011257 406 LSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 406 ~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
|+|++++|++|+.||.|++|++.++
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999999999999999999999853
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-31 Score=255.34 Aligned_cols=283 Identities=14% Similarity=0.189 Sum_probs=209.5
Q ss_pred cEEEEEECCCCCE-EEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 37 IISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 37 ~V~~~~~s~dg~~-latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
....++++|+... +++|+.||.|+||++...... ......+.+|. +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence 3446888887654 445789999999998654311 01234577888 889
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
++++|+|. ++.+|++++.||+|++||+.++.....
T Consensus 85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~-------------------------------------------- 119 (402)
T 2aq5_A 85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLP-------------------------------------------- 119 (402)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSC--------------------------------------------
T ss_pred EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccc--------------------------------------------
Confidence 99999972 467999999999999999987632100
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
...+... +.+|...|.+++|+|++ .+|+++ .|+.|++||+++.. ....+
T Consensus 120 -------------------------~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~-- 170 (402)
T 2aq5_A 120 -------------------------LREPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTL-- 170 (402)
T ss_dssp -------------------------BCSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEE--
T ss_pred -------------------------cCCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEE--
Confidence 0001111 26788999999999998 689888 89999999998543 33321
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccccee-ccccCCCccccccccccceEEEEECCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
....|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+ ..|.. ..+.++.|+|+
T Consensus 171 ---~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~-----------~~~~~~~~~~~ 231 (402)
T 2aq5_A 171 ---GPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKDRPHEG-----------TRPVHAVFVSE 231 (402)
T ss_dssp ---CTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEECSSCS-----------SSCCEEEECST
T ss_pred ---ecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeeccCCCC-----------CcceEEEEcCC
Confidence 116789999999999999 99999999999999999987642 444 33331 23899999999
Q ss_pred CCEEEEE----cCCeEEEEeccCCCCceeeeee-eccccccccccccCCCccceeeEEEcCCCCEEEE-eecCCeEEEEe
Q 011257 353 GRHILSR----DYMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFG 426 (490)
Q Consensus 353 g~~l~sg----~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~i~vw~ 426 (490)
+++|++| .|+.|++||++....++..... +... |.+++|+|++++|++ |+.||.|++|+
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i~d 296 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRYFE 296 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEEEE
T ss_pred CcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEEEE
Confidence 9999998 4699999999863333433332 2222 458999999999875 55799999999
Q ss_pred cCCCceeeeEecc--CCCceEEEEEccCCCCCCC
Q 011257 427 CSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 427 ~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~~~ 458 (490)
+.+++..+..+.. |..+|.+++|+|++.....
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 297 ITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp ECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred ecCCCcceEeecccccCCcccceEEeccccccee
Confidence 9988742344443 5589999999999987653
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-32 Score=250.79 Aligned_cols=242 Identities=13% Similarity=0.156 Sum_probs=188.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|++++|+| ++++|++|+.|++|++||+.++......
T Consensus 14 ~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~~~~~~---------------------------------------- 51 (316)
T 3bg1_A 14 DMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGGQILIA---------------------------------------- 51 (316)
T ss_dssp CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence 8899999997 6779999999999999999876422110
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEEEEe-cCCcEEEEEcCCCCc-ee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQ-SF 268 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~~wd~~~~~~-~~ 268 (490)
. +.+|...|.+++|++ ++++|++| .|++|++||+++... ..
T Consensus 52 ----------------------------------~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 52 ----------------------------------D-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp ----------------------------------E-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred ----------------------------------E-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE
Confidence 1 257889999999986 48899999 899999999985431 22
Q ss_pred eeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEE
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
. .+.+|...|.+++|+|+ + .+|++|+.|++|++||++.+... ..... +.+|...+.+
T Consensus 97 ~-------~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~-~~~~~------------~~~h~~~v~~ 155 (316)
T 3bg1_A 97 H-------EHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW-EVKKI------------NNAHTIGCNA 155 (316)
T ss_dssp E-------EECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE-EECCB------------TTSSSSCBCC
T ss_pred E-------EccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc-ceeee------------eccccCCcce
Confidence 1 35789999999999998 6 89999999999999999875311 00122 2345578999
Q ss_pred EEECCC-----------------CCEEEEEc-CCeEEEEeccCCC--CceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 347 IKFARN-----------------GRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 347 l~~sp~-----------------g~~l~sg~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
++|+|+ +++|++|+ |+.|++||++..+ +++..+.+|... |.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~ 220 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAW 220 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEEC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEe
Confidence 999997 46888874 6999999997522 355667777765 569999
Q ss_pred cCCC----CEEEEeecCCeEEEEecCCC---ceeeeEeccCCCceEEEEEccCCCCCCCCccCcceec
Q 011257 407 SGDG----GRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (490)
Q Consensus 407 s~d~----~~l~s~~~dg~i~vw~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~~ 467 (490)
+|++ ++|++++.||+|++|++.+. +.....+..|...|.+++|+|+++..+.++.++..+.
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 9987 89999999999999999863 2223456778999999999999998887776655433
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.7e-31 Score=250.72 Aligned_cols=274 Identities=10% Similarity=0.165 Sum_probs=217.9
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
.+.|+|++ ++.|++|. |++|+|||+.+++.......+.+. ..+ .+++|+|+|+
T Consensus 108 ~~~l~wS~---~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~------~~V-------~sv~fspdg~---------- 160 (420)
T 4gga_A 108 LNLVDWSS---GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPG------EYI-------SSVAWIKEGN---------- 160 (420)
T ss_dssp CBCEEECT---TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTT------CCE-------EEEEECTTSS----------
T ss_pred ceeEEECC---CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCC------CcE-------EEEEECCCCC----------
Confidence 57799984 34666654 999999999999988777655331 122 2899999999
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
+|++|+.|+.|++||+ ...++.+.+ .+|...+.+++++ +..|++| .|+.+++||.........
T Consensus 161 --~lasgs~Dg~v~iWd~-------~~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~---- 224 (420)
T 4gga_A 161 --YLAVGTSSAEVQLWDV-------QQQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA---- 224 (420)
T ss_dssp --EEEEEETTSCEEEEET-------TTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----
T ss_pred --EEEEEECCCeEEEEEc-------CCCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE----
Confidence 8999999999999992 223344444 7898988887764 6789998 899999999986655544
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.+.+|...+..+.++|++ .++++++.|+.+++||..+++.....+..... |...|.+++|+|++
T Consensus 225 ---~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~------------~~~~V~~~~~~p~~ 288 (420)
T 4gga_A 225 ---TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ------------HQGAVKAVAWCPWQ 288 (420)
T ss_dssp ---EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECC------------CSSCEEEEEECTTC
T ss_pred ---EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecc------------cCCceeeeeeCCCc
Confidence 357899999999999999 99999999999999999987643322333333 44789999999965
Q ss_pred C-EEEEE---cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee--cCCeEEEEec
Q 011257 354 R-HILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGC 427 (490)
Q Consensus 354 ~-~l~sg---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~vw~~ 427 (490)
. +++++ .|++|++||+.+ ++++..+..+.. +.++.|+|+++.|++++ .||.|+|||+
T Consensus 289 ~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 289 SNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp TTEEEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ccEEEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 4 55543 369999999997 787777776654 35899999999988765 7999999999
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
.++++ +..+.+|.++|++++|+|||..++.++.++..
T Consensus 352 ~~~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 352 PTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp TTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred CCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 99988 68999999999999999999988877766643
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.5e-30 Score=249.27 Aligned_cols=297 Identities=13% Similarity=0.209 Sum_probs=223.8
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (490)
...|+.... ........|.+.|++++|+ +++|++|+.||.|++||+.+++ ..
T Consensus 141 i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~ 192 (445)
T 2ovr_B 141 LKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CI 192 (445)
T ss_dssp EEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EE
T ss_pred EEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EE
Confidence 445766541 1122334799999999998 5699999999999999998765 24
Q ss_pred cccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccc
Q 011257 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (490)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (490)
..+.+|. ..|.++.|+ +..+++++.||+|++||+.+++.......+.. .+.
T Consensus 193 ~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--------~v~----- 243 (445)
T 2ovr_B 193 HTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--------AVR----- 243 (445)
T ss_dssp EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSS--------CEE-----
T ss_pred EEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc--------cEE-----
Confidence 5677888 889999996 35899999999999999999876665543321 111
Q ss_pred cCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c
Q 011257 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (490)
Q Consensus 174 ~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (490)
+++| ++. ++++++.|+.|++||+ . ...+...+ .+|...|.+++| ++..++++ .
T Consensus 244 --~~~~--~~~------------~l~~~~~dg~i~iwd~-~------~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~ 297 (445)
T 2ovr_B 244 --CVQY--DGR------------RVVSGAYDFMVKVWDP-E------TETCLHTL-QGHTNRVYSLQF--DGIHVVSGSL 297 (445)
T ss_dssp --EEEE--CSS------------CEEEEETTSCEEEEEG-G------GTEEEEEE-CCCSSCEEEEEE--CSSEEEEEET
T ss_pred --EEEE--CCC------------EEEEEcCCCEEEEEEC-C------CCcEeEEe-cCCCCceEEEEE--CCCEEEEEeC
Confidence 3444 555 8999999999999992 2 12334444 688899999999 78899998 8
Q ss_pred CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCC
Q 011257 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 253 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
|+.|++||+++.... . .+.+|...+.++.++ + .++++|+.||.|++||+++++. +..+..+
T Consensus 298 d~~i~i~d~~~~~~~-~-------~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~---- 358 (445)
T 2ovr_B 298 DTSIRVWDVETGNCI-H-------TLTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQC----LQTLQGP---- 358 (445)
T ss_dssp TSCEEEEETTTCCEE-E-------EECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCE----EEEECST----
T ss_pred CCeEEEEECCCCCEE-E-------EEcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcE----EEEEccC----
Confidence 999999999855433 3 356788889888875 4 6899999999999999988764 3444432
Q ss_pred ccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
..|...|.+++|+ +++|++|+ ||.|++||+.+ ++.+..+....... ....|++++|+|++.
T Consensus 359 -----~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 359 -----NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT-GEFIRNLVTLESGG----------SGGVVWRIRASNTKL 420 (445)
T ss_dssp -----TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEEECTTGG----------GTCEEEEEEECSSEE
T ss_pred -----CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC-CceeeeeeccccCC----------CCceEEEEEecCCEE
Confidence 1244789999996 57888875 69999999997 88887774221100 001267999999999
Q ss_pred EEEEeecCCe----EEEEecCCC
Q 011257 412 RVATGSYSNL----FRVFGCSEG 430 (490)
Q Consensus 412 ~l~s~~~dg~----i~vw~~~~~ 430 (490)
+|++|+.||. |.|||+...
T Consensus 421 ~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEcccCCCCccEEEEEECCCC
Confidence 9999999997 999999853
No 98
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=254.54 Aligned_cols=309 Identities=13% Similarity=0.132 Sum_probs=217.9
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeecc-----CCCcCCCCCCc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-----HPEKAAGNGPI 167 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-----~~~~~~~~~~~ 167 (490)
...+.+|. +.|++++|+| .++.+|++++.||.|++||+.++.......... ........+.+
T Consensus 36 ~~~~~~h~------------~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 36 RDVERIHG------------GGINTLDIEP-VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp EEECCCCS------------SCEEEEEECT-TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred eeeeeccC------------CcEEEEEEec-CCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 34567788 8899999996 256799999999999999998764322221100 00000112222
Q ss_pred cccccccCceEEec-cCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--
Q 011257 168 FGSHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-- 244 (490)
Q Consensus 168 ~~~~~~~~~~~~s~-~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 244 (490)
.+++|+| ++. ++++++.|+.|++||+ .. ......+ .+...+.++.+++.
T Consensus 103 -------~~~~~~~~~~~------------~l~s~~~d~~i~iwd~-~~------~~~~~~~--~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 103 -------ETVQWYPHDTG------------MFTSSSFDKTLKVWDT-NT------LQTADVF--NFEETVYSHHMSPVST 154 (408)
T ss_dssp -------EEEEECTTCTT------------CEEEEETTSEEEEEET-TT------TEEEEEE--ECSSCEEEEEECSSCS
T ss_pred -------EEEEEccCCCc------------EEEEEeCCCeEEEeeC-CC------Cccceec--cCCCceeeeEeecCCC
Confidence 3788999 555 7899999999999992 21 2222222 35677889999885
Q ss_pred -CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccc
Q 011257 245 -GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (490)
Q Consensus 245 -~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (490)
+.+++++ .++.|++||+++.... . .+.+|...|.+++|+|++..+|++++.||.|++||++++... +
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~-~-------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~ 223 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCS-H-------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---L 223 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCC-E-------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---S
T ss_pred CCcEEEEEcCCCeEEEEeCCCccee-e-------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---c
Confidence 4589988 8999999999855433 2 356789999999999999447999999999999999987533 2
Q ss_pred ceecccc---CCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCc
Q 011257 323 KLFEEQE---APGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (490)
Q Consensus 323 ~~~~~~~---~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
..+..+. ..........|...|.+++|+|++++|+++ .|+.|++||+.+ ++....+..+..... .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~ 292 (408)
T 4a11_B 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------K 292 (408)
T ss_dssp EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------S
T ss_pred ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------c
Confidence 3332222 112223346688999999999999999997 469999999997 655544433321110 0
Q ss_pred cceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcce
Q 011257 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (490)
Q Consensus 399 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~ 465 (490)
..+........+..+++++.|+.|++||+.+++. +..+.+|..+|.+++|+|+++..+.++.++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ-ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE-EEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcc-eeeeccCCCeEEEEEEcCCCCEEEEECCCCeE
Confidence 0011222233455677778899999999999987 68899999999999999999887776655543
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-32 Score=256.53 Aligned_cols=258 Identities=9% Similarity=0.068 Sum_probs=185.3
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
++|++++|+| ++.+|++++.|+.|++||+.++.......+..+ .+.+ .+++|+|+++
T Consensus 12 ~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h------~~~v-------~~~~~s~~~~-------- 68 (377)
T 3dwl_C 12 KPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHARTFSDH------DKIV-------TCVDWAPKSN-------- 68 (377)
T ss_dssp SCCSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECCCBCCC------SSCE-------EEEEECTTTC--------
T ss_pred CcEEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEEEEecC------CceE-------EEEEEeCCCC--------
Confidence 6799999997 677999999999999999998743333332221 1223 3889999998
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCc--eee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ--SFN 269 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~--~~~ 269 (490)
+|++++.|+.|++||+.... ....... ..+|...|.+++|+|++++|+++ .|+.|++||++.... ...
T Consensus 69 ----~l~s~s~d~~v~vwd~~~~~----~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 139 (377)
T 3dwl_C 69 ----RIVTCSQDRNAYVYEKRPDG----TWKQTLV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK 139 (377)
T ss_dssp ----CEEEEETTSSEEEC----------CCCCEEE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE
T ss_pred ----EEEEEeCCCeEEEEEcCCCC----ceeeeeE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee
Confidence 89999999999999932221 1112222 36789999999999999999999 899999999985542 122
Q ss_pred eeecCCCccCC-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC--CccccccccccceEE
Q 011257 270 IVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIASISD 346 (490)
Q Consensus 270 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~ 346 (490)
.+.. |...|.+++|+|++ .+|++++.|+.|++||++..+....+.....+...+ .....+ +|...|.+
T Consensus 140 -------~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 210 (377)
T 3dwl_C 140 -------HLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA 210 (377)
T ss_dssp -------EECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred -------EeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence 2345 89999999999999 999999999999999997544221100000000000 011112 67789999
Q ss_pred EEECCCCCEEEEEc-CCeEEEEeccCCCCc----eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCe
Q 011257 347 IKFARNGRHILSRD-YMTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (490)
Q Consensus 347 l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 421 (490)
++|+|++++|++++ |+.|++||+.+ ++. +..+..|... |.+++|+|++++|++|+.|+.
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcE
Confidence 99999999999974 69999999997 665 6777777655 569999999999999987776
Q ss_pred EEEEecC
Q 011257 422 FRVFGCS 428 (490)
Q Consensus 422 i~vw~~~ 428 (490)
+ +|+..
T Consensus 275 ~-~~~~~ 280 (377)
T 3dwl_C 275 I-LLQGN 280 (377)
T ss_dssp E-EECCC
T ss_pred E-EEEeC
Confidence 6 66655
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-30 Score=247.26 Aligned_cols=271 Identities=11% Similarity=0.154 Sum_probs=212.3
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
+.++.|++ ..+++++.|+.|++||+.+++......... .+.+ .+++|+|+++
T Consensus 96 ~~~~~~s~----~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------~~~v-------~~v~~s~~~~---------- 147 (401)
T 4aez_A 96 LNLLDWSN----LNVVAVALERNVYVWNADSGSVSALAETDE-------STYV-------ASVKWSHDGS---------- 147 (401)
T ss_dssp CBCEEECT----TSEEEEEETTEEEEEETTTCCEEEEEECCT-------TCCE-------EEEEECTTSS----------
T ss_pred EEEEeecC----CCEEEEECCCeEEEeeCCCCcEeEeeecCC-------CCCE-------EEEEECCCCC----------
Confidence 55677752 358888999999999999998776655421 1122 3889999998
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
++++++.||.|++||+ . ..+....+ .+|...|.+++| +++.|+++ .|+.|++||++.......
T Consensus 148 --~l~~~~~dg~i~iwd~-~------~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~---- 211 (401)
T 4aez_A 148 --FLSVGLGNGLVDIYDV-E------SQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG---- 211 (401)
T ss_dssp --EEEEEETTSCEEEEET-T------TCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE----
T ss_pred --EEEEECCCCeEEEEEC-c------CCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee----
Confidence 8999999999999992 2 12333444 689999999999 45789998 899999999985554443
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.+.+|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+..+ ...|.+++|+|++
T Consensus 212 ---~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~------------~~~v~~~~~~p~~ 271 (401)
T 4aez_A 212 ---TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIP----KFTKTNH------------NAAVKAVAWCPWQ 271 (401)
T ss_dssp ---EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSE----EEEECCC------------SSCCCEEEECTTS
T ss_pred ---EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCc----cEEecCC------------cceEEEEEECCCC
Confidence 356799999999999999 9999999999999999998653 2344443 3789999999976
Q ss_pred C-EEEEEc---CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEE--eecCCeEEEEec
Q 011257 354 R-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRVFGC 427 (490)
Q Consensus 354 ~-~l~sg~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~~~dg~i~vw~~ 427 (490)
. ++++++ |+.|++||+.+ ++++..+..+.. |.+++|+|++++|++ |+.||.|++|++
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred CCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 5 555554 69999999997 788877754322 459999999999998 448999999999
Q ss_pred CCCcee-eeEeccCCCceEEEEEccCCCCCCCCccCccee
Q 011257 428 SEGSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 466 (490)
Q Consensus 428 ~~~~~~-~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~~~ 466 (490)
.+++.. ...+.+|...|.+++|+|+++..+.++.++...
T Consensus 335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 335 SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp ETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred CCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 987542 234779999999999999999877776655433
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-30 Score=250.65 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=151.5
Q ss_pred ccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC---CCcEEEEEeCCCe
Q 011257 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGS 306 (490)
Q Consensus 231 ~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~ 306 (490)
.|...|.+++|+|++++|+++ .++.|++|++......... ...+.+|...|++++|+|+ + .+|++|+.|+.
T Consensus 147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~ 221 (450)
T 2vdu_B 147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT----QEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEH 221 (450)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC----CCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSC
T ss_pred cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc----ceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCc
Confidence 445778999999999999999 8999999999854432100 0145678999999999999 8 89999999999
Q ss_pred EEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccc
Q 011257 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 307 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
|++||+++++.. ..+ +.+|...|.+++|+ ++++|++++ |+.|++||+++ ++++..+..+...
T Consensus 222 i~vwd~~~~~~~----~~~-----------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~ 284 (450)
T 2vdu_B 222 IKISHYPQCFIV----DKW-----------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLI 284 (450)
T ss_dssp EEEEEESCTTCE----EEE-----------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHH
T ss_pred EEEEECCCCcee----eee-----------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhh
Confidence 999999887542 221 22344889999999 999999975 69999999997 8888888755321
Q ss_pred ccccccc----------ccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEec--CCCc--eeeeEeccCCCceEEEEEc
Q 011257 386 RPKLCDL----------YENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQT 450 (490)
Q Consensus 386 ~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~--~~~~--~~~~~~~~~~~~v~~~~~s 450 (490)
....... .....-..|.+++|+|++++|++++ .|+.|++|++ .++. ..+..+..| ..|.+++|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~ 363 (450)
T 2vdu_B 285 KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAH 363 (450)
T ss_dssp GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEE
T ss_pred hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEec
Confidence 1000000 0001112367999999999999999 8999999999 5541 225667777 889999999
Q ss_pred cCCCCC
Q 011257 451 PSRPSR 456 (490)
Q Consensus 451 p~~~~~ 456 (490)
|++...
T Consensus 364 ~~~~~v 369 (450)
T 2vdu_B 364 NDEFQV 369 (450)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 965433
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=247.59 Aligned_cols=266 Identities=14% Similarity=0.067 Sum_probs=190.2
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEE
Q 011257 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (490)
Q Consensus 39 ~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v 118 (490)
....+.+++.+||+|+.||.|++||+.+++.+ ..+. . ..|.++
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~ 82 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTG 82 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTT
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceee
Confidence 33445568899999999999999999877632 2222 2 557778
Q ss_pred EEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCcc
Q 011257 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (490)
Q Consensus 119 ~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l 198 (490)
.|+|. +++++.|++|++|+.....
T Consensus 83 ~~~~~-----~~s~s~D~~i~~w~~~~~~--------------------------------------------------- 106 (343)
T 3lrv_A 83 GEHPA-----IISRGPCNRLLLLYPGNQI--------------------------------------------------- 106 (343)
T ss_dssp CCCCS-----EEEECSTTEEEEEETTTEE---------------------------------------------------
T ss_pred eeCCc-----eEEecCCCeEEEEEccCce---------------------------------------------------
Confidence 88862 9999999999999987521
Q ss_pred ccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCC
Q 011257 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (490)
Q Consensus 199 ~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~ 275 (490)
.+|+ . ......+.+..+|...|.+++|+| ++++++++ .|+.|++||+++... ....
T Consensus 107 ---------~~~~-~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~---- 165 (343)
T 3lrv_A 107 ---------TILD-S------KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVH---- 165 (343)
T ss_dssp ---------EEEE-T------TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEE----
T ss_pred ---------EEee-c------CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEE----
Confidence 1111 0 001111122246778899999999 99999998 899999999985543 3321
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCE
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 355 (490)
...+...+.+++|+|++ .+|++|+.||.|++||+++++.. ...+.. +|..+|++++|+|+|.+
T Consensus 166 --~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~~~~-----------~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 166 --SAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQA---SSRFPV-----------DEEAKIKEVKFADNGYW 228 (343)
T ss_dssp --CCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSC---CEECCC-----------CTTSCEEEEEECTTSSE
T ss_pred --ecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccEEec-----------cCCCCEEEEEEeCCCCE
Confidence 23456679999999999 99999999999999999987642 133433 14489999999999999
Q ss_pred EEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec-CCeEEEEecCCCceee
Q 011257 356 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAES 434 (490)
Q Consensus 356 l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~vw~~~~~~~~~ 434 (490)
|++++++.|++||+++ .+.+..+..+...... +. -.+++|+|++++|++++. |+.|+||++..+....
T Consensus 229 l~s~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 229 MVVECDQTVVCFDLRK-DVGTLAYPTYTIPEFK---------TG-TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW 297 (343)
T ss_dssp EEEEESSBEEEEETTS-STTCBSSCCCBC--------------C-CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE
T ss_pred EEEEeCCeEEEEEcCC-CCcceeeccccccccc---------cc-ceEEEECCCCCEEEEecCCCCcEEEEEEcccccce
Confidence 9998888999999997 6665554432111000 00 025999999999999998 9999999997665422
Q ss_pred eEeccCCCceEEEEEcc
Q 011257 435 TTLEASKNPMRRQVQTP 451 (490)
Q Consensus 435 ~~~~~~~~~v~~~~~sp 451 (490)
. . .++..++|+|
T Consensus 298 ~-~----~~~~~~~~~~ 309 (343)
T 3lrv_A 298 T-K----DEESALCLQS 309 (343)
T ss_dssp E-E----EEEEECCC--
T ss_pred E-e----cCceeEecCc
Confidence 2 1 5677778877
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.9e-31 Score=250.96 Aligned_cols=268 Identities=17% Similarity=0.264 Sum_probs=201.2
Q ss_pred cccccccccEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 29 GEEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 29 ~~~~~h~~~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
...+.|.+.|++++|+|+ +.+||+|+.||.|++|++........ ..........+.+|.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~------- 181 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ------- 181 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS-------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC-------
Confidence 345789999999999997 78999999999999999986321100 000122345677887
Q ss_pred eeeeccceeEEEEeecCCCc-EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 108 SLEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..|.+++|+| ++. +|++++.||.|++|++..+.....
T Consensus 182 -----~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------------------------------- 219 (430)
T 2xyi_A 182 -----KEGYGLSWNP--NLNGYLLSASDDHTICLWDINATPKEHR----------------------------------- 219 (430)
T ss_dssp -----SCCCCEEECT--TSTTEEEEECTTSCEEEEETTSCCBGGG-----------------------------------
T ss_pred -----CCeEEEEeCC--CCCCeEEEEeCCCeEEEEeCCCCCCCCc-----------------------------------
Confidence 7899999997 344 899999999999999987421000
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
. ...... ..+|...|.+++|+| ++.+|+++ .|+.|++||++..
T Consensus 220 -----------~-----------------------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 220 -----------V-----------------------IDAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp -----------E-----------------------EECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred -----------e-----------------------ecccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 0 000011 257888999999999 67888888 8999999999865
Q ss_pred C--ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 265 N--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 265 ~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
. .... .+..|...|++++|+|++..+|++|+.||.|++||+++.... +..+..| ..
T Consensus 265 ~~~~~~~-------~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h------------~~ 322 (430)
T 2xyi_A 265 NTSKPSH-------TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESH------------KD 322 (430)
T ss_dssp CSSSCSE-------EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECC------------SS
T ss_pred CCCccee-------EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecC------------CC
Confidence 3 2222 245789999999999998558999999999999999974322 3455544 37
Q ss_pred ceEEEEECCCCC-EEEEE-cCCeEEEEeccCCC-------------CceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 343 SISDIKFARNGR-HILSR-DYMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 343 ~i~~l~~sp~g~-~l~sg-~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
.|.+++|+|+++ +|+++ .|+.|++||+...+ ..+..+.+|... |.+++|+
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~ 387 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWN 387 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEEC
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEEC
Confidence 899999999985 57776 57999999998522 334444455443 5699999
Q ss_pred CCCC-EEEEeecCCeEEEEecCCC
Q 011257 408 GDGG-RVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 408 ~d~~-~l~s~~~dg~i~vw~~~~~ 430 (490)
|+++ +|++++.||.|+||++..+
T Consensus 388 p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 388 PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCCEEEEEECCCCEEEeEcccc
Confidence 9999 8999999999999999854
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=3.3e-30 Score=240.21 Aligned_cols=301 Identities=11% Similarity=0.115 Sum_probs=192.7
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
-.|.+.|++++|+|||++||+|+.++ ++||+..+.+.. ...+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------------------~~~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------------------MSQEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------------------EEEEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------------------eeeec-----------
Confidence 46899999999999999999998775 789998754311 11111
Q ss_pred ccceeEEEEeecCCCcEE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
..+..+++.+. ++.+ ++++.|++|++||+.+++......... .+ .+++++++..
T Consensus 59 -~~~~~~~~~~~--~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~---------~v-------~~v~~~~~~~------ 113 (355)
T 3vu4_A 59 -RHLSKVRMLHR--TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA---------PV-------KDLFLSREFI------ 113 (355)
T ss_dssp -SCCCEEEECTT--SSEEEEECSSTTEEEEEETTTTEEEEEEECSS---------CE-------EEEEECSSEE------
T ss_pred -CCeEEEEEcCC--CCEEEEEECCccEEEEEECCCCcEEEEEECCC---------ce-------EEEEEcCCEE------
Confidence 23666777763 3355 667888999999999998766554331 11 1556665432
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE--e-cCCcEEEEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS--A-DDLRINLWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-~d~~i~~wd~~~~~~~ 267 (490)
+++ .++.+++||+..... ....+ .. ....+++++ ..++. | .+|.|++||+......
T Consensus 114 --------~~~-~~~~i~i~d~~~~~~------~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~ 172 (355)
T 3vu4_A 114 --------VVS-YGDVISVFKFGNPWK------RITDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSA 172 (355)
T ss_dssp --------EEE-ETTEEEEEESSTTCC------BSSCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----
T ss_pred --------EEE-EcCEEEEEECCCCce------eeEEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcc
Confidence 222 478899999322101 11111 11 233455666 55555 5 7999999999854310
Q ss_pred eee------eecC--CCccCCCCCceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccccceec-cccCCCccccc
Q 011257 268 FNI------VDVK--PANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFE-EQEAPGTRSFF 337 (490)
Q Consensus 268 ~~~------~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~ 337 (490)
... .... ...+.+|...|++++|+|++ .+|++|+.|++ |++||+++++. +..+. +
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~----~~~~~~g---------- 237 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVL----VREFRRG---------- 237 (355)
T ss_dssp --------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCE----EEEEECT----------
T ss_pred ccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcE----EEEEEcC----------
Confidence 000 0000 12467899999999999999 99999999998 99999998764 34454 2
Q ss_pred cccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCC-ceeeeeee-----cccccccccc-ccCCCccceeeEEEcCC
Q 011257 338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG-PVATFQVH-----EHLRPKLCDL-YENDSIFDKFECCLSGD 409 (490)
Q Consensus 338 ~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~-~~~~~~~~-----~~~~~~~~~~-~~~~~~~~v~~~~~s~d 409 (490)
.|...|.+++|+|+|++|++++ |++|++||++.... ....+... .......... .......+...++|++|
T Consensus 238 -~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 238 -LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp -TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred -CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 0347899999999999999975 69999999975211 11111110 0000000000 00001111247899999
Q ss_pred CCEEEEeecCCeEEEEecCCCc
Q 011257 410 GGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
+++|++++.||.+++|++..++
T Consensus 317 ~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEEEEEETTTTEEEEEEEEEET
T ss_pred CCEEEEEeCCCeEEEEEEEcCC
Confidence 9999999999999999987644
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=2.2e-29 Score=231.30 Aligned_cols=273 Identities=10% Similarity=0.167 Sum_probs=208.0
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
.+.|+|++ + ++|++| .|++|+|||+.+++.......+.+. ..+ .+++|+|+|+
T Consensus 28 ~~~l~WS~--~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~------~~V-------~~v~~~~~~~---------- 80 (318)
T 4ggc_A 28 LNLVDWSS--G-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPG------EYI-------SSVAWIKEGN---------- 80 (318)
T ss_dssp CBCEEECT--T-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTT------CCE-------EEEEECTTSS----------
T ss_pred ceEEEECC--C-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCC------CeE-------EEEEECCCCC----------
Confidence 46799985 3 366655 5999999999999888777655331 122 2889999999
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
++++|+.|++|++|++ . ..++.+.+ .+|...+.++. +++..++++ .++.+++|+.........
T Consensus 81 --~l~sgs~Dg~v~iw~~-~------~~~~~~~~-~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~---- 144 (318)
T 4ggc_A 81 --YLAVGTSSAEVQLWDV-Q------QQKRLRNM-TSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVA---- 144 (318)
T ss_dssp --EEEEEETTSEEEEEET-T------TTEEEEEE-ECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEE----
T ss_pred --EEEEEECCCcEEEeec-C------CceeEEEe-cCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEE----
Confidence 8999999999999992 2 23344444 67877776654 456789998 899999999986655544
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
.+.+|...+..+.+++++ .+|++++.|+.|++||+++++........... |...|.+++++|++
T Consensus 145 ---~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~ 208 (318)
T 4ggc_A 145 ---TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ------------HQGAVKAVAWCPWQ 208 (318)
T ss_dssp ---EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECC------------CCSCEEEEEECTTS
T ss_pred ---EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecc------------cCCceEEEEecCCC
Confidence 356799999999999999 99999999999999999987643222222222 33789999999976
Q ss_pred CEEE---EEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee--cCCeEEEEec
Q 011257 354 RHIL---SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGC 427 (490)
Q Consensus 354 ~~l~---sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~vw~~ 427 (490)
..++ +++ ++.|++||... .........+. . +..+.|+|+++.+++++ .|+.|++||+
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~-~---------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-Q---------------VCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTT-CCEEEEEECSS-C---------------EEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred CcEEEEEecCCCCEEEEEeccc-cccccccccee-e---------------eeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 5443 343 49999999986 55444433222 2 45899999999887654 7999999999
Q ss_pred CCCceeeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
++++. +..+.+|.++|++++|+||++..+.++.++.
T Consensus 272 ~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 272 PTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTE
T ss_pred CCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Confidence 99988 6899999999999999999998777666554
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.7e-30 Score=245.75 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=145.7
Q ss_pred ccccccceeEEEecC--------CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE
Q 011257 229 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (490)
Q Consensus 229 ~~~~~~~v~~i~~~~--------~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 299 (490)
+.+|...|.+++|+| ++++||++ .|++|++||++....... +.+|...+.+++|+|++..+|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEEECCCCCceEE
Confidence 378999999999998 78999999 999999999985554433 3568889999999998856899
Q ss_pred EEeCCCeEEEEeCCCccccccccceeccccC---------CCccccccccccceEEEEEC-CCCCEEEEEc-CCeEEEEe
Q 011257 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---------PGTRSFFTEIIASISDIKFA-RNGRHILSRD-YMTLKLWD 368 (490)
Q Consensus 300 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~i~~l~~s-p~g~~l~sg~-d~~i~iwd 368 (490)
+|+.|++|++||+++++...........+.. ........+|...+.++.|+ ||++.|++++ |+++++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 9999999999999987643211111000000 01112235677889999987 7999999985 69999999
Q ss_pred ccCCCCceeeeeeeccccccccccccC---CCccceeeEEEcC--CCCEEEEeecCCeEEEEecCCCceeeeEeccCCCc
Q 011257 369 INMDSGPVATFQVHEHLRPKLCDLYEN---DSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 443 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~--d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 443 (490)
+.. ++....+..+............. ........+.|+| ++.++++|+.||.|++||+.+++. ...+..|..+
T Consensus 284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMP 361 (393)
T ss_dssp C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSC
T ss_pred Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCc
Confidence 986 66666665554332221111100 0000112344554 445677888999999999999987 4677788899
Q ss_pred eEEEEEccCCCCCCCCcc
Q 011257 444 MRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 444 v~~~~~sp~~~~~~~~~~ 461 (490)
|++++|||||+..+.++.
T Consensus 362 V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp EEEEEECTTSSEEEEEES
T ss_pred EEEEEEcCCCCEEEEEeC
Confidence 999999999998776653
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.7e-30 Score=242.51 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=205.6
Q ss_pred ccccccccccccc--ccccccccccccEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCc
Q 011257 13 QPLEWKFSQVFGE--RTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (490)
Q Consensus 13 ~~~~w~~~~~~~~--~~~~~~~~h~~~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (490)
....|++.+. ++ ........|.+.|++++|+| ++++||+|+.||.|+|||+.++.... ..
T Consensus 58 ~i~v~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----------------~~ 120 (402)
T 2aq5_A 58 AFLVLPLGKT-GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----------------PL 120 (402)
T ss_dssp CEEEEETTCC-EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------CB
T ss_pred EEEEEECccC-CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------cc
Confidence 4456777542 11 11222447999999999999 99999999999999999998764210 00
Q ss_pred cccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccc
Q 011257 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (490)
......+.+|. ..|++++|+|+. ..+|++++.|+.|++||+.+++......
T Consensus 121 ~~~~~~~~~h~------------~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------- 171 (402)
T 2aq5_A 121 REPVITLEGHT------------KRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLG---------------- 171 (402)
T ss_dssp CSCSEEEECCS------------SCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEEC----------------
T ss_pred CCceEEecCCC------------CeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEe----------------
Confidence 01245677888 889999999732 2589999999999999999876433110
Q ss_pred cccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEE
Q 011257 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (490)
Q Consensus 170 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (490)
..+|...|.+++|+|++++|+
T Consensus 172 -----------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 172 -----------------------------------------------------------PDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp -----------------------------------------------------------TTTCCSCEEEEEECTTSSCEE
T ss_pred -----------------------------------------------------------cCCCCCceEEEEECCCCCEEE
Confidence 035668899999999999999
Q ss_pred Ee-cCCcEEEEEcCCCCceeeeeecCCCcc-CCCCCc-eEEEEEcCCCCcEEEEE---eCCCeEEEEeCCCccccccccc
Q 011257 250 SA-DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEV-ITSAEFHPTHCNMLAYS---SSKGSIRLIDMRQSALCDTHSK 323 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~p~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~ 323 (490)
++ .|+.|++||+++... .. .+ ..|... +.+++|+|++ .+|++| +.|+.|++||+++++.. +.
T Consensus 193 ~~~~d~~i~iwd~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~---~~ 260 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTV-VA-------EKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP---LS 260 (402)
T ss_dssp EEETTSEEEEEETTTTEE-EE-------EEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC---SE
T ss_pred EEecCCcEEEEeCCCCce-ee-------eeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC---ce
Confidence 99 899999999985443 32 23 456655 8999999999 899999 79999999999886531 12
Q ss_pred eeccccCCCccccccccccceEEEEECCCCCEEEE-Ec-CCeEEEEeccCCCCc-eeeeeeeccccccccccccCCCccc
Q 011257 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RD-YMTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFD 400 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~-d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
.... .|...+.+++|+|++++|++ |+ |+.|++||+.. +++ +..+..+.... .
T Consensus 261 ~~~~-----------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~-------------~ 315 (402)
T 2aq5_A 261 LQEL-----------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKE-------------S 315 (402)
T ss_dssp EEEC-----------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS-STTCEEEEEEECCSS-------------C
T ss_pred EEec-----------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC-CCcceEeecccccCC-------------c
Confidence 2211 12367999999999999974 64 79999999997 554 66666654211 1
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 316 QRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 459999999998875 566999999998764
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=235.78 Aligned_cols=292 Identities=12% Similarity=0.149 Sum_probs=210.0
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecC-CCcEEEEEeCcCeEEEEEccC-CeEE-EEeeeccCCCcCCCCCCccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQE-KKVK-KVFDWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~-~~~~l~~~~~dg~i~lwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (490)
+..+.+|. +.|++++|+|+. ++.+|++++.||.|++||+.+ +... .....+. +.+
T Consensus 32 ~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--------~~v-- 89 (368)
T 3mmy_A 32 IEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--------GPV-- 89 (368)
T ss_dssp EECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--------SCE--
T ss_pred eEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--------CCE--
Confidence 45677888 889999999832 157999999999999999997 4332 3332221 122
Q ss_pred cccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEe--cCCCCE
Q 011257 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGET 247 (490)
Q Consensus 170 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~ 247 (490)
.+++|+|+++ +|++++.|+.|++||+ .. ..... ...|...|.+++| ++++++
T Consensus 90 -----~~~~~~~~~~------------~l~s~~~dg~v~iwd~-~~------~~~~~--~~~~~~~v~~~~~~~~~~~~~ 143 (368)
T 3mmy_A 90 -----LDVCWSDDGS------------KVFTASCDKTAKMWDL-SS------NQAIQ--IAQHDAPVKTIHWIKAPNYSC 143 (368)
T ss_dssp -----EEEEECTTSS------------EEEEEETTSEEEEEET-TT------TEEEE--EEECSSCEEEEEEEECSSCEE
T ss_pred -----EEEEECcCCC------------EEEEEcCCCcEEEEEc-CC------CCcee--eccccCceEEEEEEeCCCCCE
Confidence 2889999998 8999999999999992 22 11222 2578899999999 899999
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
|+++ .|+.|++||+++.... .. +.. ...+.++.+.+ ..+++++.++.+++||++...... ....
T Consensus 144 l~~~~~dg~i~vwd~~~~~~~-~~-------~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~---~~~~ 208 (368)
T 3mmy_A 144 VMTGSWDKTLKFWDTRSSNPM-MV-------LQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF---RRIE 208 (368)
T ss_dssp EEEEETTSEEEEECSSCSSCS-EE-------EEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE---EECC
T ss_pred EEEccCCCcEEEEECCCCcEE-EE-------Eec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchh---hhcc
Confidence 9998 8999999999855433 22 222 33566666664 478888999999999998764321 1111
Q ss_pred cccCCCccccccccccceEEEEECCCCCE----EEEE-cCCeEEEEeccCCC---CceeeeeeeccccccccccccCCCc
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFARNGRH----ILSR-DYMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSI 398 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp~g~~----l~sg-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
.. +...+.++++.++... ++++ .|+.|++||++. . ..+..+..|......... ....
T Consensus 209 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~ 273 (368)
T 3mmy_A 209 SP-----------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA---PQDI 273 (368)
T ss_dssp CS-----------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC-SCHHHHSEEEECSEEC----CC---CEEE
T ss_pred cc-----------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC-CCccccceeeeeeecccccccc---cccc
Confidence 11 1134555655554443 7776 569999999986 4 456677766542110000 0011
Q ss_pred cceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 399 ~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
..|.+++|+|++++|++++.||.|++||+.+++. +..+..|..+|.+++|+|++...+.++.++
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK-LKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-EEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCCcE-EEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 1267999999999999999999999999999887 688999999999999999999888876543
No 109
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=236.80 Aligned_cols=245 Identities=15% Similarity=0.175 Sum_probs=191.7
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCcccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
...+.+|. +.|++++|+| ++.+|++++.||.|++||+.........
T Consensus 4 ~~~~~~h~------------~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------- 49 (379)
T 3jrp_A 4 VVIANAHN------------ELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLID-------------------- 49 (379)
T ss_dssp -CCEEECC------------CCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEE--------------------
T ss_pred cEEecCCc------------ccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCcceeee--------------------
Confidence 45678888 8899999997 6679999999999999999754322211
Q ss_pred ccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEE
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFIS 250 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~ 250 (490)
. +.+|...|.+++|+++ +++|++
T Consensus 50 ------------------------------------------------------~-~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 50 ------------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp ------------------------------------------------------E-ECCCSSCEEEEEECCGGGCSEEEE
T ss_pred ------------------------------------------------------E-ecCCCCcEEEEEeCCCCCCCEEEE
Confidence 1 2567789999999987 999999
Q ss_pred e-cCCcEEEEEcCCCCc-eeeeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 251 A-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 251 ~-~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
+ .|+.|++||+..... ... .+..|...|.+++|+|+ + .+|++++.|+.|++||++.+.... ...+
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~--~~~~- 143 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIA-------VHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIII- 143 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC--EEEE-
T ss_pred eccCCEEEEEEcCCCceeEee-------eecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee--eEEe-
Confidence 9 899999999985431 221 35678999999999999 7 899999999999999999864321 1222
Q ss_pred cccCCCccccccccccceEEEEECC-------------CCCEEEEEc-CCeEEEEeccCCCCc----eeeeeeecccccc
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRD-YMTLKLWDINMDSGP----VATFQVHEHLRPK 388 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp-------------~g~~l~sg~-d~~i~iwd~~~~~~~----~~~~~~~~~~~~~ 388 (490)
..|...|.+++|+| ++.+|++++ |+.|++||++. +.. ...+.+|...
T Consensus 144 -----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~h~~~--- 208 (379)
T 3jrp_A 144 -----------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW--- 208 (379)
T ss_dssp -----------ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---
T ss_pred -----------cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC-CCcceeeEEEEecccCc---
Confidence 23447899999999 699999975 69999999986 442 3445555544
Q ss_pred ccccccCCCccceeeEEEcCC---CCEEEEeecCCeEEEEecCCCc----eeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 389 LCDLYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGS----AESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d---~~~l~s~~~dg~i~vw~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
|.+++|+|+ +++|++++.||.|++||+.+++ ........|...|.+++|+|+++..+.++.
T Consensus 209 ------------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 209 ------------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp ------------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred ------------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 569999999 8999999999999999999874 222333448899999999999998877665
Q ss_pred Ccc
Q 011257 462 SGV 464 (490)
Q Consensus 462 ~~~ 464 (490)
++.
T Consensus 277 dg~ 279 (379)
T 3jrp_A 277 DNK 279 (379)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.2e-28 Score=233.37 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=215.3
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCc
Q 011257 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (490)
Q Consensus 48 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~ 127 (490)
.++++++.|+.|++||+.+++. ...+..| ..+.+++|+| ++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~-------------~~~~~~~~s~--dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVISP--DGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEECT--TSS
T ss_pred EEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecC-------------CCcceEEECC--CCC
Confidence 4688899999999999987652 3445555 3489999997 555
Q ss_pred EE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCcc-ccCCCCC
Q 011257 128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS-FPPGGVS 205 (490)
Q Consensus 128 ~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l-~~~~~~g 205 (490)
++ ++++.|+.|++||+.+++......... .+..++|+|+|+ ++ +++..++
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------~v~~~~~spdg~------------~l~~~~~~~~ 96 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVPAGS----------------SPQGVAVSPDGK------------QVYVTNMASS 96 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSS----------------SEEEEEECTTSS------------EEEEEETTTT
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEECCC----------------CccceEECCCCC------------EEEEEECCCC
Confidence 65 667799999999999998776555432 223789999999 45 5666789
Q ss_pred cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEE-EEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 283 (490)
.|++||+ .. .+....+ . +...+.+++|+|+++.+ +++ .++.|++||+.+. +....+ .. ..
T Consensus 97 ~v~v~d~-~~------~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~-------~~-~~ 158 (391)
T 1l0q_A 97 TLSVIDT-TS------NTVAGTV-K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTV-------SV-GR 158 (391)
T ss_dssp EEEEEET-TT------TEEEEEE-E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE-------EC-CS
T ss_pred EEEEEEC-CC------CeEEEEE-e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEE-------ec-CC
Confidence 9999992 21 1222222 2 33568999999999987 566 7999999999844 333322 22 34
Q ss_pred ceEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--
Q 011257 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 360 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-- 360 (490)
.+.+++|+|++ +.+ ++++.++.|++||+++++.. ..+..+ ..+.+++|+|++++|++++
T Consensus 159 ~~~~~~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~ 220 (391)
T 1l0q_A 159 SPKGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKVE-------------AAPSGIAVNPEGTKAYVTNVD 220 (391)
T ss_dssp SEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEECS-------------SEEEEEEECTTSSEEEEEEEC
T ss_pred CcceEEECCCC-CEEEEEeCCCCEEEEEECCCCeEE----EEEecC-------------CCccceEECCCCCEEEEEecC
Confidence 56899999999 555 78888999999999987532 333222 5689999999999988763
Q ss_pred --CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEE-EEeecCCeEEEEecCCCceeeeEe
Q 011257 361 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTL 437 (490)
Q Consensus 361 --d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~vw~~~~~~~~~~~~ 437 (490)
++.|++||+.+ ++.+..+..+.. +.+++|+|++++| ++++.|+.|++||+.+++. +..+
T Consensus 221 ~~~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~-~~~~ 282 (391)
T 1l0q_A 221 KYFNTVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI-TATM 282 (391)
T ss_dssp SSCCEEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEE
T ss_pred cCCCcEEEEECCC-CeEEEEEecCCC----------------ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE-EEEE
Confidence 59999999997 777777766543 2489999999987 5678899999999999877 5777
Q ss_pred ccCCCceE---EEEEccCCCCCCCC
Q 011257 438 EASKNPMR---RQVQTPSRPSRPLG 459 (490)
Q Consensus 438 ~~~~~~v~---~~~~sp~~~~~~~~ 459 (490)
..|..+.. .+.+.|++.....+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~a 307 (391)
T 1l0q_A 283 AVGKNPYASGQFIGSIPVQPVYPSA 307 (391)
T ss_dssp ECSSSEECCSSCEEECSSCCCCCBC
T ss_pred ECCcCCCccceeeeccccccccccc
Confidence 77766543 36677776655433
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-30 Score=242.34 Aligned_cols=258 Identities=9% Similarity=0.080 Sum_probs=186.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.+|+|+| ||.++|+++.|++|+ |...++.. .. +...++ .++|+|+|.
T Consensus 16 ~~v~sv~~Sp--DG~~iASas~D~TV~--d~~~~~~l-----~g------h~~~v~-------~V~FsPdg~-------- 65 (588)
T 2j04_A 16 DWKNNLTWAR--DGTLYLTTFPDISIG--QPKYAKDI-----NC------NSKNLF-------HVKEFPLEF-------- 65 (588)
T ss_dssp SSSCCEEECT--TSCEEEECSSSEEEE--EECCCSCC-----SS------BGGGTE-------EEEEECCCC--------
T ss_pred ccEEEEEECC--CCCEEEEEcCCceee--ccccccee-----cC------CCccEE-------EEEECCCCC--------
Confidence 6799999996 788999999999999 64444311 11 112333 789999884
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++.+.+|+ .+.. ..+...|...|.+++|+|+|++||++ .||.|++||... ...
T Consensus 66 -----------~~~~~~~~----~~~~------~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~-- 119 (588)
T 2j04_A 66 -----------ENKLDFEL----AQQN------GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT-- 119 (588)
T ss_dssp -----------CCTTTTSC----CCSS------CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE--
T ss_pred -----------cceEEEEe----CCCc------eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee--
Confidence 23333333 1111 11112557889999999999999999 899999999652 332
Q ss_pred ecCCCccCCCCC-----ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc---ccceeccccCCCccccccccccc
Q 011257 272 DVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 272 ~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
.+. |.. .+.+++|+|+| ++|++|+.||+|++||+.++..... .+.++..+ ..+|...
T Consensus 120 -----~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~~ 184 (588)
T 2j04_A 120 -----NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKDW 184 (588)
T ss_dssp -----ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCCC
T ss_pred -----ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------ccccccc
Confidence 234 444 59999999999 9999999999999999998742110 13444333 2446689
Q ss_pred eEEEEECCCCCEEEEEcCCeEEEEeccCCCCc---eeeee-eeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 344 ISDIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
|.+++|+||| +++++.|++|++||+.. +.. .+++. +|... |.+++|+ |+.||+++ +
T Consensus 185 V~sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa~-~ 244 (588)
T 2j04_A 185 VTHIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLTC-P 244 (588)
T ss_dssp EEEEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEEC-S
T ss_pred EEEEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEEe-C
Confidence 9999999999 55556789999999986 442 34563 55444 5699999 68999887 6
Q ss_pred CeEEEEecCCCceeeeEeccCCCceEEEEE--ccCCCCCCCCccC
Q 011257 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLS 462 (490)
Q Consensus 420 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~~~~~~~~ 462 (490)
+.|++||+.+++.. ....+|.+.+..++| +||+...+.+..+
T Consensus 245 ~tIkLWd~~~~~~~-~~~~gh~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 245 GYVHKIDLKNYSIS-SLKTGSLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp SEEEEEETTTTEEE-EEECSCCSCCCEEEETTCSSCEEEEECSSC
T ss_pred CeEEEEECCCCeEE-EEEcCCCceEEEEEeeeCCCCCEEEEEcCC
Confidence 99999999987652 333389999999999 9999776666533
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6.7e-29 Score=237.92 Aligned_cols=258 Identities=16% Similarity=0.217 Sum_probs=191.6
Q ss_pred cceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEecc
Q 011257 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (490)
Q Consensus 103 ~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 182 (490)
+.......|.+.|++++|+|. ++.+|++++.||.|++|++....... .+.
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~-----------------------------~~~ 168 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKP-----------------------------EPS 168 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSC-----------------------------CTT
T ss_pred eEEEEEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCccccc-----------------------------Ccc
Confidence 333444556699999999973 25689999999999999997632000 000
Q ss_pred CCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEE
Q 011257 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWN 260 (490)
Q Consensus 183 g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd 260 (490)
+. ...... +.+|...|.+++|+|++. +|++| .||.|++|+
T Consensus 169 ~~-------------------------------------~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 210 (430)
T 2xyi_A 169 GE-------------------------------------CQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWD 210 (430)
T ss_dssp CC-------------------------------------CCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEE
T ss_pred cc-------------------------------------CCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEe
Confidence 00 001111 267888999999999988 99998 899999999
Q ss_pred cCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccc
Q 011257 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (490)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 340 (490)
+.........+. ....+.+|...|.+++|+|++..+|++++.||.|++||++++... ..+..+.. |
T Consensus 211 ~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~~~~~------------~ 276 (430)
T 2xyi_A 211 INATPKEHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSHTVDA------------H 276 (430)
T ss_dssp TTSCCBGGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSEEEEC------------C
T ss_pred CCCCCCCCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cceeEeec------------C
Confidence 986332111110 011356799999999999955489999999999999999976311 11333333 4
Q ss_pred ccceEEEEECCCCC-EEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-EEEEee
Q 011257 341 IASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS 417 (490)
Q Consensus 341 ~~~i~~l~~sp~g~-~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~ 417 (490)
...|++++|+|+++ +|++|+ ||.|++||++....++..+..|... |++++|+|+++ +|++++
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~ 341 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSG 341 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEE
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEe
Confidence 47899999999987 577774 6999999999756778888887765 56999999985 799999
Q ss_pred cCCeEEEEecCCCc-------------eeeeEeccCCCceEEEEEccCCCCCC
Q 011257 418 YSNLFRVFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 418 ~dg~i~vw~~~~~~-------------~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
.||.|+|||+.... ..+..+.+|...|++++|+|+++...
T Consensus 342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 394 (430)
T 2xyi_A 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394 (430)
T ss_dssp TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEE
T ss_pred CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEE
Confidence 99999999998721 23577889999999999999998433
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1e-28 Score=229.73 Aligned_cols=267 Identities=15% Similarity=0.117 Sum_probs=195.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
+.|++++|+| ++.+|++++.||.|++||+.++.....
T Consensus 12 ~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------------------- 48 (351)
T 3f3f_A 12 DLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWE----------------------------------------- 48 (351)
T ss_dssp SCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred cceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence 8899999997 667999999999999999986531100
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC--CCCEEEEe-cCCcEEEEEcCCCCcee-
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF- 268 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d~~i~~wd~~~~~~~~- 268 (490)
.... +.+|...|.+++|+| ++++|+++ .|+.|++||++......
T Consensus 49 -------------------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 49 -------------------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp -------------------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred -------------------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 0011 257788999999999 69999998 89999999998543110
Q ss_pred ----eeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccccC-CCccccccccc
Q 011257 269 ----NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA-PGTRSFFTEII 341 (490)
Q Consensus 269 ----~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~ 341 (490)
... ..+..|...|.+++|+|+ + .+|++++.||.|++||+++++.. ..+..... .........|.
T Consensus 97 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 97 GRRWNKL----CTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp SCSEEEE----EEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEEEEEEESCSCCCSSCS
T ss_pred ccCccee----eeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccccccccccccccCCcc
Confidence 100 135679999999999999 8 89999999999999999987643 22221100 00011123456
Q ss_pred cceEEEEECCC---CCEEEEEc-CCeEEEEeccCCCCc--eeeeeeeccccccccccccCCCccceeeEEEcCCC----C
Q 011257 342 ASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----G 411 (490)
Q Consensus 342 ~~i~~l~~sp~---g~~l~sg~-d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~ 411 (490)
..+.+++|+|+ +.++++++ ++.+.+|+... +.. +..+.+|... |.+++|+|++ +
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQ 231 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcce
Confidence 78999999997 88999875 58887776664 443 4555566554 5699999998 8
Q ss_pred EEEEeecCCeEEEEecCCCc---------------------------------------------eeeeEeccCCCceEE
Q 011257 412 RVATGSYSNLFRVFGCSEGS---------------------------------------------AESTTLEASKNPMRR 446 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~~---------------------------------------------~~~~~~~~~~~~v~~ 446 (490)
+|++|+.||.|++||+.++. ..+..+.+|...|++
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence 99999999999999998752 235778899999999
Q ss_pred EEEccCCCCCCCCccCcce-ecCeeeccccceee
Q 011257 447 QVQTPSRPSRPLGSLSGVV-RRGMFTHIQLLCIF 479 (490)
Q Consensus 447 ~~~sp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 479 (490)
++|+|+++..+.++.++.. .|.........|+.
T Consensus 312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 9999999987777765543 34343333444443
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.1e-28 Score=236.96 Aligned_cols=286 Identities=8% Similarity=0.024 Sum_probs=212.2
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
+.....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 119 ~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~------------------~~~~~~~~~~~~----------- 169 (433)
T 3bws_A 119 FKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV------------------RLSPPEKYKKKL----------- 169 (433)
T ss_dssp EECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE------------------EECCCHHHHTTC-----------
T ss_pred EcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe------------------eecCcccccccC-----------
Confidence 344556779999998888889989999999999876632 000011345676
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..|.+++|+| ++.++++++.|+.|++||+.+++.......+. ..+..++|+|+++
T Consensus 170 -~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~------- 224 (433)
T 3bws_A 170 -GFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTG---------------KWSKILLYDPIRD------- 224 (433)
T ss_dssp -CEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSS---------------SSEEEEEEETTTT-------
T ss_pred -CceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCC---------------CCeeEEEEcCCCC-------
Confidence 7899999975 56789999999999999999887665544221 1223789999998
Q ss_pred cCCCCcc-ccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c--------CCcEEEEEc
Q 011257 192 CASNDSS-FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--------DLRINLWNL 261 (490)
Q Consensus 192 ~~~~~~l-~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~--------d~~i~~wd~ 261 (490)
.+ ++++.++.|++||+ .. .+....+ .. ...+.+++|+|+++.++++ . |+.|++||+
T Consensus 225 -----~l~~~~~~~~~i~~~d~-~~------~~~~~~~-~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 225 -----LVYCSNWISEDISVIDR-KT------KLEIRKT-DK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp -----EEEEEETTTTEEEEEET-TT------TEEEEEC-CC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred -----EEEEEecCCCcEEEEEC-CC------CcEEEEe-cC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 45 56668999999992 21 1222222 22 3458999999999998886 3 679999999
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
.+. +.... ..|...+.+++|+|++..++++++.|+.|++||+.+++.. ..+.. .
T Consensus 291 ~~~-~~~~~--------~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~~-------------~ 344 (433)
T 3bws_A 291 DKE-KLIDT--------IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIPV-------------F 344 (433)
T ss_dssp TTT-EEEEE--------EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEEC-------------S
T ss_pred CCC-cEEee--------ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEecC-------------C
Confidence 844 33322 2345678899999999446677799999999999987542 33332 1
Q ss_pred cceEEEEECCCCCEEEEEc----------------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEE
Q 011257 342 ASISDIKFARNGRHILSRD----------------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (490)
..+.+++|+|+|++|++++ ||.|++||+.+ ++.+..+..+.. +.+++
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~ 407 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQ----------------PTGLD 407 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSS----------------EEEEE
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCC----------------CceEE
Confidence 5689999999999888763 35999999986 777777765332 35899
Q ss_pred EcCCCCEEEEeec-CCeEEEEecC
Q 011257 406 LSGDGGRVATGSY-SNLFRVFGCS 428 (490)
Q Consensus 406 ~s~d~~~l~s~~~-dg~i~vw~~~ 428 (490)
|+|+|++|++++. |+.|++|+++
T Consensus 408 ~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 408 VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEET
T ss_pred EcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999988875 9999999986
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.3e-28 Score=227.80 Aligned_cols=302 Identities=11% Similarity=0.061 Sum_probs=197.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|++++|+| ++.+|++|+.|+ +++|++..++......... ...+++.+++..
T Consensus 20 ~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~------- 72 (355)
T 3vu4_A 20 NPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH-----------------LSKVRMLHRTNY------- 72 (355)
T ss_dssp CCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEEEEEECSC-----------------CCEEEECTTSSE-------
T ss_pred CceEEEEECC--CCCEEEEEcCCE-EEEEecCCcceeeeeecCC-----------------eEEEEEcCCCCE-------
Confidence 8899999996 677888888765 7899998776544332221 114566666662
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.+++++.+++|++||+ . ..++...+ .+...|.+++++++. ++++.++.|++||+....+....
T Consensus 73 ----~~~~~~~d~~v~iWd~-~------~~~~~~~~--~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~-- 135 (355)
T 3vu4_A 73 ----VAFVTGVKEVVHIWDD-V------KKQDVSRI--KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRITD-- 135 (355)
T ss_dssp ----EEEECSSTTEEEEEET-T------TTEEEEEE--ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSSC--
T ss_pred ----EEEEECCccEEEEEEC-C------CCcEEEEE--ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeEE--
Confidence 3467888899999992 1 12233333 355789999998764 55556889999999855233221
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEE--EeCCCeEEEEeCCCccccccccceeccccCCCc-cccccccccceEEEEE
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKF 349 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~l~~ 349 (490)
+.. +...+++++ . .+++ |+.||.|++||++++.............. ..+ ...+.+|...|++++|
T Consensus 136 -----~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~-~~p~~~~~~~h~~~v~~~~~ 203 (355)
T 3vu4_A 136 -----DIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA-ILGKGVLIKAHTNPIKMVRL 203 (355)
T ss_dssp -----CEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEE
T ss_pred -----ecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccc-cCcccEEEEccCCceEEEEE
Confidence 222 445566777 3 4444 68899999999997642100000000000 001 2335567799999999
Q ss_pred CCCCCEEEEEc-CCe-EEEEeccCCCCceeeee-e-eccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE
Q 011257 350 ARNGRHILSRD-YMT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (490)
Q Consensus 350 sp~g~~l~sg~-d~~-i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw 425 (490)
+|+|++|++|+ |++ |++||+++ ++++..+. + |... |.+++|+|++++|++++.|+.|++|
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCEEEEE
Confidence 99999999985 698 99999997 88888887 4 6554 5699999999999999999999999
Q ss_pred ecCCCcee-eeEec---------------------cCCCceEEEEEccCCCCCCCCccCcceecCe---eeccccceeee
Q 011257 426 GCSEGSAE-STTLE---------------------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRGM---FTHIQLLCIFI 480 (490)
Q Consensus 426 ~~~~~~~~-~~~~~---------------------~~~~~v~~~~~sp~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 480 (490)
|+..+... ...+. .+..+...++|+||+.....+..++...... ...+...|+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~ 347 (355)
T 3vu4_A 268 EIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQM 347 (355)
T ss_dssp ESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTEEEEEE
T ss_pred EccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCceEEEee
Confidence 99865321 11111 1122346789999998887777655433332 22344556555
Q ss_pred eeechh
Q 011257 481 QALTKL 486 (490)
Q Consensus 481 ~~~~~~ 486 (490)
+..++|
T Consensus 348 ~~~~~~ 353 (355)
T 3vu4_A 348 DQREQL 353 (355)
T ss_dssp EEEEEC
T ss_pred Cchhhh
Confidence 544443
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.8e-29 Score=238.71 Aligned_cols=265 Identities=8% Similarity=-0.014 Sum_probs=167.0
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
|...+....+++++.+||+|+.|++|+|||..++... ....+..+.+|+ +
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~------------------~~~~~~~~~gH~------------~ 137 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII------------------TQHVLGGKSGHH------------N 137 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEE------------------EEEEECTTTSCS------------S
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc------------------eeeeecccCCCC------------C
Confidence 3444444555567778999999999999999876532 112345688999 8
Q ss_pred ceeEEEEeec------CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 114 KINKIRWCQS------ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 114 ~V~~v~~~p~------~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
.|++|+|+|. .++++|++++.|++|+|||+.++.....
T Consensus 138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~------------------------------------ 181 (393)
T 4gq1_A 138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA------------------------------------ 181 (393)
T ss_dssp CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE------------------------------------
T ss_pred ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee------------------------------------
Confidence 8999999973 2567999999999999999987653221
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCC-EEEEe-cCCcEEEEEcCCCC
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~~wd~~~~~ 265 (490)
...|...|.+++|+|++. +|+++ .|+.|++||+++..
T Consensus 182 -----------------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 182 -----------------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp -----------------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred -----------------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 124446677788888764 56777 78888888877543
Q ss_pred ceeeeee-------------c----CCCccCCCCCceEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCccccccccceecc
Q 011257 266 QSFNIVD-------------V----KPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 266 ~~~~~~~-------------~----~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
....... . ......+|...+.++.|+ |++ ..+++++.|+++++||+..++.. ..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~ 295 (393)
T 4gq1_A 221 SAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISD 295 (393)
T ss_dssp ----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC---------------
T ss_pred ccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEee
Confidence 2211100 0 001235678889999987 788 89999999999999999876532 22222
Q ss_pred ccCCCc-------cccccccccceEEEEECC--CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCC
Q 011257 328 QEAPGT-------RSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS 397 (490)
Q Consensus 328 ~~~~~~-------~~~~~~h~~~i~~l~~sp--~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (490)
+..... ......+ .......|+| ++.++++|+ |+.|++||+.+ +++...+..|...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~------------ 361 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMP------------ 361 (393)
T ss_dssp --------CCSCSEEEECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSC------------
T ss_pred ecCccccEEEcccccccccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCc------------
Confidence 211100 0001111 1222334444 444666675 69999999997 7777777777655
Q ss_pred ccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 398 ~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
|.+++|+|||++||+++++| +.+|.+.
T Consensus 362 ---V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 362 ---IVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ---EEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ---EEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 56999999999999998776 6566554
No 117
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.9e-29 Score=230.17 Aligned_cols=276 Identities=11% Similarity=0.108 Sum_probs=201.5
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCC-EEEEecCCCcEEEEEe-cCCCCCCCcccccccccceeecCCccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER-TDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~-~latg~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (490)
...|++..............|...|++++|+|+++ +|++|+.||.|++||+ .+++
T Consensus 35 v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----------------------- 91 (342)
T 1yfq_A 35 LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS----------------------- 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-----------------------
T ss_pred EEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-----------------------
Confidence 45677765311111233457999999999999999 9999999999999999 7654
Q ss_pred ccccccc--CCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccc
Q 011257 92 YKTEFQS--HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (490)
Q Consensus 92 ~~~~~~~--h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (490)
...+.+ |. ..|.+++|+| +.++++++.|+.|++||+.+.......
T Consensus 92 -~~~~~~~~~~------------~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------- 138 (342)
T 1yfq_A 92 -FQALTNNEAN------------LGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIA----------------- 138 (342)
T ss_dssp -EEECBSCCCC------------SCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEE-----------------
T ss_pred -eEeccccCCC------------CceEEEEeCC---CCEEEEEcCCCeEEEEccccccccccc-----------------
Confidence 244566 77 8899999996 569999999999999998741100000
Q ss_pred cccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEE
Q 011257 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (490)
Q Consensus 170 ~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 249 (490)
..+ ++... ..|...|.+++|+|++ ++
T Consensus 139 -----------~~~---------------------------------------~~~~~--~~~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 139 -----------VKN---------------------------------------LNSNN--TKVKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp -----------EEE---------------------------------------SCSSS--SSSCCCEEEEEECSSE--EE
T ss_pred -----------ccC---------------------------------------CeeeE--EeeCCceEEEEecCCc--EE
Confidence 000 00001 1256788999999988 77
Q ss_pred Ee-cCCcEEEEEcCC-CCceeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCc--cccccccce
Q 011257 250 SA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQS--ALCDTHSKL 324 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~ 324 (490)
++ .|+.|++||++. ....... ....|...+.+++|+| ++ .+|++++.||.|++||++.. .........
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTI------EESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEE------EECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred EEeCCCeEEEEECCcccccccee------eecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 76 899999999986 3332221 2346788999999999 98 89999999999999999876 111122455
Q ss_pred eccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeee-ccccccccccccCCCcccee
Q 011257 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKF 402 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~ 402 (490)
+..+.... ...+|...|.+++|+|++++|++++ ||.|++||+.+ ++.+..+..| ... |.
T Consensus 238 ~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~---------------v~ 298 (342)
T 1yfq_A 238 FRCHRLNL---KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDS---------------VV 298 (342)
T ss_dssp EECCCCCT---TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSE---------------EE
T ss_pred eecccccc---cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCC---------------ce
Confidence 55553210 0113445899999999999999975 69999999997 8888888877 554 45
Q ss_pred eEEEcCCCCEEEEeecCCe-EEEEec
Q 011257 403 ECCLSGDGGRVATGSYSNL-FRVFGC 427 (490)
Q Consensus 403 ~~~~s~d~~~l~s~~~dg~-i~vw~~ 427 (490)
+++ |++++|++++.||. .+.|..
T Consensus 299 ~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 299 KIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred Eec--CCCCeEEEEecCCcccccccc
Confidence 777 99999999999998 555553
No 118
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=9e-28 Score=230.62 Aligned_cols=262 Identities=15% Similarity=0.244 Sum_probs=203.4
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.++.| ++.++++|+.||.|++||+.+++.......+. +.+. +++| +++
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--------~~v~-------~l~~--~~~-------- 184 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT--------GSVL-------CLQY--DER-------- 184 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCCS--------SCEE-------EEEC--CSS--------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC--------CcEE-------EEEE--CCC--------
Confidence 66888887 46799999999999999999988766554332 1121 3344 555
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++++.||.|++||+ . ..++...+ .+|...|.+++|++ ..+++| .|+.|++||+.........
T Consensus 185 ----~l~sg~~dg~i~vwd~-~------~~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~- 249 (435)
T 1p22_A 185 ----VIITGSSDSTVRVWDV-N------TGEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR- 249 (435)
T ss_dssp ----EEEEEETTSCEEEEES-S------SCCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-
T ss_pred ----EEEEEcCCCeEEEEEC-C------CCcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-
Confidence 8999999999999993 2 12334444 68999999999974 588888 8999999999855433211
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
..+.+|...|.+++| ++ .++++|+.||.|++||+++++. +..+..|. ..|.+++|+
T Consensus 250 ----~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~------------~~v~~~~~~- 305 (435)
T 1p22_A 250 ----RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEF----VRTLNGHK------------RGIACLQYR- 305 (435)
T ss_dssp ----EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCE----EEEEECCS------------SCEEEEEEE-
T ss_pred ----eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcE----EEEEcCCC------------CcEEEEEeC-
Confidence 135789999999999 55 7999999999999999998764 34555443 789999984
Q ss_pred CCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+.++++| .|+.|++||+++ ++++..+.+|... |.+++| ++++|++|+.||.|++||+.++
T Consensus 306 -~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred -CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 6788887 569999999997 8899999888765 457887 8899999999999999999876
Q ss_pred ce--------eeeEeccCCCceEEEEEccCCCCCCCCccCc
Q 011257 431 SA--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (490)
Q Consensus 431 ~~--------~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~ 463 (490)
+. .+..+.+|..+|.+++| ++.....++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence 51 36788999999999999 565555555443
No 119
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.1e-27 Score=212.85 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=179.6
Q ss_pred cEEEEEECCCCC---EEEEecCCCcEEEEEecCCCCCC--CcccccccccceeecCCcc-ccccccccCCcccceeeeee
Q 011257 37 IISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNG--GQRRDLEMMDYSMSRHPEF-RYKTEFQSHEPEFDYLKSLE 110 (490)
Q Consensus 37 ~V~~~~~s~dg~---~latg~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~p~~-~~~~~~~~h~~~~~~~~~~~ 110 (490)
.|.++-|-..|- .++++++. .|++|+..+...-. ..-+..+..+..+.+.|+- .++..--|+- +
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~ 110 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNL---------E 110 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSS---------S
T ss_pred EEeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccc---------c
Confidence 567777766443 56666654 99999998863110 0011122344555555532 2211111111 1
Q ss_pred eccceeEEEEeec--CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 111 IEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 111 ~~~~V~~v~~~p~--~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
...|++++|+|+ .-+..+++++.+ +++|++.+++....
T Consensus 111 -~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~s------------------------------------- 150 (356)
T 2w18_A 111 -IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSS------------------------------------- 150 (356)
T ss_dssp -EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEE-------------------------------------
T ss_pred -ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEe-------------------------------------
Confidence 156888999873 005677877744 77888766553221
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC---CCCEEEEe-cCCcEEEEEcCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEIS 264 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~~wd~~~~ 264 (490)
...+.|+.|++|++... ++....+ .+|...+..++|++ ++..|+++ .|++|++||++++
T Consensus 151 ----------s~~g~d~~V~~~~~s~d------G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 151 ----------SGTLSDQQVEVMTFAED------GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp ----------ESSSTTCEEEEEEECTT------SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred ----------cccCCCCcEEEEEECCC------Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 01236788888883121 2222222 57888999999999 78999998 8999999999955
Q ss_pred CceeeeeecCCCccCCC---CCceEEEEEcCCCCcEE------------EEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 265 NQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNML------------AYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
. .... +.+| ...+.+++|+|++ .++ ++|+.|++|++||..+++.. ..+....
T Consensus 214 k-~l~t-------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~~~ 280 (356)
T 2w18_A 214 Q-LLKK-------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLYCL 280 (356)
T ss_dssp C-EEEE-------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEECC
T ss_pred c-EEEE-------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEeec
Confidence 4 4443 2222 3467888999998 665 66888999999999988643 2221000
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
-.+|...+.+..++ +.++++|+ |++|+|||+.+ ++.+.++.+|.... +..++|+|
T Consensus 281 -------p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~v--------------vs~vafSP 336 (356)
T 2w18_A 281 -------PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQH--------------WSFVKWSG 336 (356)
T ss_dssp -------CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CC--------------CCEEEECS
T ss_pred -------cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCe--------------EEEEEECC
Confidence 01222344444443 78899985 79999999998 99999999887642 12589999
Q ss_pred CCCEEEEeecCCeEEEEecC
Q 011257 409 DGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~ 428 (490)
||++|++|+.|++|+|||+.
T Consensus 337 DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 337 TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SSSEEEEECTTSCEEEEEEC
T ss_pred CCCEEEEEECCCcEEEecCC
Confidence 99999999999999999963
No 120
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=230.95 Aligned_cols=292 Identities=13% Similarity=0.158 Sum_probs=187.0
Q ss_pred ccEEEEEECCCC--CEEEEecCCCcEEEEEecCCCCCCCcccccc--c------ccceeec---CCc-----cccccc-c
Q 011257 36 DIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLE--M------MDYSMSR---HPE-----FRYKTE-F 96 (490)
Q Consensus 36 ~~V~~~~~s~dg--~~latg~~dg~v~iwd~~~~~~~~~~~~~~~--~------~~~~~~~---~p~-----~~~~~~-~ 96 (490)
+.|++++|+|++ .+|++|+.|+.|++||+.++........... . ....+.+ .|. ...... .
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 889999999998 7999999999999999986432100000000 0 0000000 000 000011 2
Q ss_pred ccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC-eEEEEeeeccCCCcCCCCCCccccccccC
Q 011257 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (490)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
.+|. ..|++++|+| ++.+|+++ .|+.|++||+... +.........
T Consensus 174 ~~h~------------~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~------------------- 219 (447)
T 3dw8_B 174 NAHT------------YHINSISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKP------------------- 219 (447)
T ss_dssp SCCS------------SCCCEEEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC-------------------
T ss_pred cCCC------------cceEEEEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeeccc-------------------
Confidence 4555 8899999997 56799998 7999999999843 2222111000
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DD 253 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d 253 (490)
....+|...|.+++|+|++ ++|++| .|
T Consensus 220 ---------------------------------------------------~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 220 ---------------------------------------------------ANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp ---------------------------------------------------SSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred ---------------------------------------------------ccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 0025788899999999998 999999 89
Q ss_pred CcEEEEEcCCCCce---eeeeecCCCccCCCCC------------ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-ccc
Q 011257 254 LRINLWNLEISNQS---FNIVDVKPANMEDLTE------------VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SAL 317 (490)
Q Consensus 254 ~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~ 317 (490)
+.|++||++..... .. .+..|.. .|.+++|+|++ ++|++++. +.|++||+++ ++.
T Consensus 249 g~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 249 GTIRLCDMRASALCDRHSK-------LFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp SCEEEEETTTCSSSCTTCE-------EECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSSC
T ss_pred CeEEEEECcCCccccceee-------EeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCccc
Confidence 99999999865531 22 2344544 89999999999 99999999 9999999987 443
Q ss_pred cccccceeccccCCCccc--cc-cccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccccc-
Q 011257 318 CDTHSKLFEEQEAPGTRS--FF-TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL- 392 (490)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~--~~-~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 392 (490)
+..+..|....... .+ ......+..++|+|++++|++|+ |+.|++||+.+ ++.+ .+..+..........
T Consensus 320 ----~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~~~~~~~~~~~~ 393 (447)
T 3dw8_B 320 ----VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT-KRDI-TLEASRENNKPRTVLK 393 (447)
T ss_dssp ----SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT-CCEE-EEECCSTTCCTTCBCC
T ss_pred ----cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC-Ccce-eeeecccccccccccC
Confidence 35555543110000 00 00001234599999999999985 69999999986 5543 444443211100000
Q ss_pred -----------------ccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 393 -----------------YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 393 -----------------~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
...+.-..|..++|+|++++||+++.++ +++|..+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 394 PRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 0001112466899999999999998876 7777644
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-28 Score=245.70 Aligned_cols=246 Identities=16% Similarity=0.188 Sum_probs=189.8
Q ss_pred cccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccc
Q 011257 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (490)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (490)
..+.+|. +.|++++|+| ++.+|++|+.||+|++||+.++......
T Consensus 3 ~~l~gH~------------~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~~~~~~--------------------- 47 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGETHKLID--------------------- 47 (753)
T ss_dssp -----CC------------CCEEEECCCS--SSCCEEEEETTTEEEEEEEETTEEEEEE---------------------
T ss_pred eecccCc------------ceeEEEEECC--CCCeEEEEECCCcEEEEecCCCCCccce---------------------
Confidence 3467888 8899999997 5679999999999999998754322211
Q ss_pred cCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC--CCEEEEe
Q 011257 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA 251 (490)
Q Consensus 174 ~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~ 251 (490)
. +.+|...|.+++|+|+ +++|++|
T Consensus 48 -----------------------------------------------------~-l~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 48 -----------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp -----------------------------------------------------E-ECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred -----------------------------------------------------e-ccCCcCceEEEEecCCCCCCEEEEE
Confidence 1 2577889999999988 9999999
Q ss_pred -cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCccccccccceeccc
Q 011257 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 252 -~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
.||.|++||+.+.... .. ..+.+|...|.+++|+|+ + ..+++|+.||.|++||++++.... ...+
T Consensus 74 s~Dg~I~vwd~~~~~~~-~~-----~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~--~~~~--- 141 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWS-QI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS--PIII--- 141 (753)
T ss_dssp ETTSCEEEEEEETTEEE-EE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC--CEEE---
T ss_pred eCCCeEEEEECCCCccc-cc-----ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc--eeEe---
Confidence 8999999999854311 11 145779999999999999 7 899999999999999998864221 1222
Q ss_pred cCCCccccccccccceEEEEECC-------------CCCEEEEEc-CCeEEEEeccCCC---Cceeeeeeeccccccccc
Q 011257 329 EAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCD 391 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp-------------~g~~l~sg~-d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~ 391 (490)
.+|...|.+++|+| ++.+|++|+ ||.|++||++... .+...+.+|...
T Consensus 142 ---------~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~------ 206 (753)
T 3jro_A 142 ---------DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW------ 206 (753)
T ss_dssp ---------ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC------
T ss_pred ---------ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc------
Confidence 33447899999999 588899874 6999999998622 334455556554
Q ss_pred cccCCCccceeeEEEcCC---CCEEEEeecCCeEEEEecCCCce----eeeEeccCCCceEEEEEccCCCCCCCCccCcc
Q 011257 392 LYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d---~~~l~s~~~dg~i~vw~~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~~~~~~~~~~ 464 (490)
|++++|+|+ +++|++|+.||.|++||+.+++. .......|...|.+++|+|++.....++.++.
T Consensus 207 ---------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 207 ---------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp ---------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred ---------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 569999999 89999999999999999998741 23445568899999999999998877765543
No 122
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.7e-27 Score=226.63 Aligned_cols=258 Identities=10% Similarity=0.039 Sum_probs=188.3
Q ss_pred cccccEEEEEECCCCCEE-EEecCCCcEEEEEec--CCCCCCCcccccccccceeecCCccccccccc--cCCcccceee
Q 011257 33 QEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ--SHEPEFDYLK 107 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~l-atg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~h~~~~~~~~ 107 (490)
.|.+.|++++|+|++++| |+|+.||.|+|||+. ++.. +..+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-----------------------~~~~~~~~~~------- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-----------------------LKLRKRFCFS------- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-----------------------EEEEEEEECS-------
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-----------------------eeeeecccCC-------
Confidence 567789999999999996 899999999999998 5542 23333 444
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..|++++|+| ++.+|++++.||.|++|++.++.....
T Consensus 150 -----~~v~~~~~sp--~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------------------ 186 (450)
T 2vdu_B 150 -----KRPNAISIAE--DDTTVIIADKFGDVYSIDINSIPEEKF------------------------------------ 186 (450)
T ss_dssp -----SCEEEEEECT--TSSEEEEEETTSEEEEEETTSCCCSSC------------------------------------
T ss_pred -----CCceEEEEcC--CCCEEEEEeCCCcEEEEecCCcccccc------------------------------------
Confidence 7799999997 677999999999999999876541100
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC---CCEEEEe-cCCcEEEEEcCC
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEI 263 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~~wd~~~ 263 (490)
+... +.+|...|.+++|+|+ +++|+++ .|+.|++||+.+
T Consensus 187 ------------------------------------~~~~-~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 187 ------------------------------------TQEP-ILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp ------------------------------------CCCC-SEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred ------------------------------------ccee-eecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 0001 2567789999999999 9999999 899999999985
Q ss_pred CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc----------
Q 011257 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---------- 333 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------- 333 (490)
...... .+.+|...|.+++|+ ++ .+|++++.|++|++||+++++.. ..+..+.....
T Consensus 230 ~~~~~~-------~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 296 (450)
T 2vdu_B 230 CFIVDK-------WLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPP 296 (450)
T ss_dssp TTCEEE-------ECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC--
T ss_pred Cceeee-------eecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccc
Confidence 543322 146799999999999 88 99999999999999999988643 33322110000
Q ss_pred ---cccccccccceEEEEECCCCCEEEEEc--CCeEEEEec--cCCC---CceeeeeeeccccccccccccCCCccceee
Q 011257 334 ---RSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDI--NMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (490)
Q Consensus 334 ---~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (490)
..........|.+++|+|++++|++++ ++.|++|++ .. + ..+..+..+ .. |.+
T Consensus 297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~---------------v~~ 359 (450)
T 2vdu_B 297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YN---------------VIS 359 (450)
T ss_dssp --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SC---------------EEE
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cc---------------eEE
Confidence 000002235789999999999999874 599999999 43 4 444555555 22 569
Q ss_pred EEEcCCCCEEEEeec------CCeEEEEecCCC
Q 011257 404 CCLSGDGGRVATGSY------SNLFRVFGCSEG 430 (490)
Q Consensus 404 ~~~s~d~~~l~s~~~------dg~i~vw~~~~~ 430 (490)
++|+|++.++++++. ++.|.+|.+...
T Consensus 360 ~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 360 LSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999996544544443 556888887643
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.4e-27 Score=225.43 Aligned_cols=305 Identities=12% Similarity=0.129 Sum_probs=212.3
Q ss_pred ccccEEEEEECCCCC-EEEEec----CCC----cEEEEEe--cCCCCCCCcccccccccceeecCCccccccccccCCcc
Q 011257 34 EVDIISAIEFDKSGD-HLATGD----RGG----RVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (490)
Q Consensus 34 h~~~V~~~~~s~dg~-~latg~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~ 102 (490)
+...|...+|++.|. ++++|+ .+| .|+|||+ .+++.+ ....+.+|.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~---------------------~~~~~~~~~-- 117 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL---------------------AQNSYKVNK-- 117 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE---------------------EEEEEEECG--
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE---------------------eeeEEEcCh--
Confidence 345788888988775 666876 467 8999999 766532 112345555
Q ss_pred cceeeeeeeccceeEEEEeec------------CCCcEEEEEeCc------CeEEEEEccCCeEEEEeeeccCCCcCCCC
Q 011257 103 FDYLKSLEIEEKINKIRWCQS------------ANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (490)
Q Consensus 103 ~~~~~~~~~~~~V~~v~~~p~------------~~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
..+..+++.+. ..+..++.++.+ ++|++||+.++....+.....
T Consensus 118 ----------~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~-------- 179 (415)
T 2hqs_A 118 ----------QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------- 179 (415)
T ss_dssp ----------GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS--------
T ss_pred ----------hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCC--------
Confidence 33433333320 113456665543 799999998766544443321
Q ss_pred CCccccccccCceEEeccCCccccccccCCCCccccCCCCC---cEEEeeeecccccccccceeeeeccccccceeEEEe
Q 011257 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS---SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN 241 (490)
Q Consensus 165 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 241 (490)
. ...++|+|+|+ .|+.++.++ .|++||+ .. .++. . +..|...+.+++|
T Consensus 180 -~-------v~~~~~Spdg~------------~la~~s~~~~~~~i~~~d~-~t------g~~~-~-l~~~~~~~~~~~~ 230 (415)
T 2hqs_A 180 -P-------LMSPAWSPDGS------------KLAYVTFESGRSALVIQTL-AN------GAVR-Q-VASFPRHNGAPAF 230 (415)
T ss_dssp -C-------EEEEEECTTSS------------EEEEEECTTSSCEEEEEET-TT------CCEE-E-EECCSSCEEEEEE
T ss_pred -c-------ceeeEEcCCCC------------EEEEEEecCCCcEEEEEEC-CC------CcEE-E-eecCCCcccCEEE
Confidence 1 22789999999 677777664 9999992 21 1222 1 2456678999999
Q ss_pred cCCCCEEE-Ee-cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CC--eEEEEeCCC
Q 011257 242 NSDGETFI-SA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQ 314 (490)
Q Consensus 242 ~~~~~~l~-~~-~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~iwd~~~ 314 (490)
+|+|+.|+ ++ .++ .|++||+.+.. .. .+..|...+.+++|+|+| +.|++++. ++ .|++||+.+
T Consensus 231 spdg~~la~~~~~~g~~~i~~~d~~~~~-~~--------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 231 SPDGSKLAFALSKTGSLNLYVMDLASGQ-IR--------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEETTTCC-EE--------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTS
T ss_pred cCCCCEEEEEEecCCCceEEEEECCCCC-EE--------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCC
Confidence 99999888 45 444 49999998543 32 346678889999999999 87777775 45 688889887
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C---CeEEEEeccCCCCceeeeeeecccccccc
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
++. ..+..+. ..+.+++|+|||++|++++ + ..|.+||+.+ ++. ..+..+. .
T Consensus 301 ~~~-----~~l~~~~------------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~----- 355 (415)
T 2hqs_A 301 GAP-----QRITWEG------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L----- 355 (415)
T ss_dssp SCC-----EECCCSS------------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S-----
T ss_pred CCE-----EEEecCC------------CcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C-----
Confidence 652 2222222 5688999999999999863 2 5899999986 544 3444332 1
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCC---eEEEEecCCCceeeeEeccCCCceEEEEEccCCCC
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 455 (490)
+.+++|+|||++|++++.++ .|++||+..+. ...+..|.+.|++++|+|....
T Consensus 356 ----------~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~--~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 356 ----------DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp ----------CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEECCCCCC
T ss_pred ----------cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc--EEEeeCCCCCCcCCcccccccc
Confidence 35899999999999988877 79999998553 4788899999999999997543
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.4e-26 Score=222.35 Aligned_cols=269 Identities=9% Similarity=0.034 Sum_probs=197.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+.+++|+| ++.++++++.|+.|++||+.+++.......... ....+. ...++|+++++
T Consensus 123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~---~~~~~~-------v~~~~~~~~~~-------- 182 (433)
T 3bws_A 123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKY---KKKLGF-------VETISIPEHNE-------- 182 (433)
T ss_dssp SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHH---HTTCCE-------EEEEEEGGGTE--------
T ss_pred CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccc---cccCCc-------eeEEEEcCCCE--------
Confidence 4467899997 566788888899999999999887653322100 001111 22688889888
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEE-Ee-cCCcEEEEEcCCCCceeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
++++++.++.|++||+ . ..+....+ ..|...+.+++|+|+++.++ ++ .++.|++||+++. .....
T Consensus 183 ----~~~s~~~d~~v~~~d~-~------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~ 249 (433)
T 3bws_A 183 ----LWVSQMQANAVHVFDL-K------TLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRK 249 (433)
T ss_dssp ----EEEEEGGGTEEEEEET-T------TCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEE
T ss_pred ----EEEEECCCCEEEEEEC-C------CceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEE
Confidence 7899999999999992 2 12233333 46778899999999999885 45 6999999999844 33332
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEe--------CCCeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
+. +...+.+++|+|++ +.+++++ .||.|++||+++++.. ..+ . |..
T Consensus 250 -------~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~-~------------~~~ 303 (433)
T 3bws_A 250 -------TD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTI-G------------PPG 303 (433)
T ss_dssp -------CC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEE-E------------EEE
T ss_pred -------ec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eec-c------------CCC
Confidence 22 24458999999999 7888887 5889999999987542 222 1 225
Q ss_pred ceEEEEECCCCCEEEE-E-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec--
Q 011257 343 SISDIKFARNGRHILS-R-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~s-g-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-- 418 (490)
.+.+++|+|++++++. + .++.|++||+.+ ++.+..+.... . +.+++|+|++++|++++.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIPVFD-K---------------PNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEECSS-S---------------EEEEEECTTSSEEEEEECCC
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEecCCC-C---------------CCeEEEcCCCCEEEEEecCC
Confidence 6889999999986654 4 459999999986 66666664322 1 358999999999888876
Q ss_pred -------------CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 419 -------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 419 -------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
||.|++||+.+++. +..+.. ...+.+++|+|+++....+
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTV-KEFWEA-GNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred CccccccccccccceEEEEEECCCCcE-EEEecC-CCCCceEEEcCCCCEEEEE
Confidence 57999999999876 456655 4579999999999876544
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6e-27 Score=208.21 Aligned_cols=238 Identities=12% Similarity=0.044 Sum_probs=161.7
Q ss_pred ccccEEEEEECCC----CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 34 EVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 34 h~~~V~~~~~s~d----g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
|.+.|.+++|+|| ++++++++.+ +++|++.+++.+......+...+..+.++|+.+.+..+.+|.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--------- 178 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP--------- 178 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------
Confidence 5668999999999 9999998744 889999776644332334678888999999999988888998
Q ss_pred eeccceeEEEEee-cCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 110 EIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 110 ~~~~~V~~v~~~p-~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..++.++|+| +.++.+|++++.|++|+|||+.+++....+..+... + .....++|+|+|+
T Consensus 179 ---~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--------v----~~v~~vafSpdG~---- 239 (356)
T 2w18_A 179 ---PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--------Q----ASVCHKAYSEMGL---- 239 (356)
T ss_dssp ---CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------------CCCEEEEEEETTE----
T ss_pred ---CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--------e----eeeEEEEECCCCC----
Confidence 6688899998 567789999999999999999999876655422100 0 0111345666665
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
++++++.+ . ....+++| .|++|++||..+ ++.
T Consensus 240 --------~lvs~s~~-----------------------------~---------~~w~laSGs~D~tIklWd~~t-gk~ 272 (356)
T 2w18_A 240 --------LFIVLSHP-----------------------------C---------AKESESLRSPVFQLIVINPKT-TLS 272 (356)
T ss_dssp --------EEEEEC--------------------------------------------------CCEEEEEEETTT-TEE
T ss_pred --------EEEEeccC-----------------------------C---------CcceeeccCCCcEEEEEECCC-CEE
Confidence 22211110 0 01135677 899999999984 444
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccc-eEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISD 346 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~ 346 (490)
+..+... ...+|...+.+..++ + .++++++.|++|+|||+.+++. +.++.+|. .. +..
T Consensus 273 l~v~~~~--~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~----l~tL~gH~------------~~vvs~ 331 (356)
T 2w18_A 273 VGVMLYC--LPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQC----TALLPPVS------------DQHWSF 331 (356)
T ss_dssp EEEEEEC--CCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSE----EEEECCC--------------CCCCE
T ss_pred EEEEEee--ccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcE----EEEecCCC------------CCeEEE
Confidence 3332110 014566655555554 5 7899999999999999999875 35666554 44 446
Q ss_pred EEECCCCCEEEEEc-CCeEEEEec
Q 011257 347 IKFARNGRHILSRD-YMTLKLWDI 369 (490)
Q Consensus 347 l~~sp~g~~l~sg~-d~~i~iwd~ 369 (490)
++|+|||++|++|+ |++|+|||+
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEecC
Confidence 89999999999986 699999996
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.3e-25 Score=212.67 Aligned_cols=329 Identities=9% Similarity=0.083 Sum_probs=219.7
Q ss_pred ccccccccccccccccccccccccEEEEEECCCCCEE-EEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccc
Q 011257 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (490)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~l-atg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 92 (490)
...|+.... +. ...+.+...+.+++|+|+|++| ++++.|+.|++||+.+++.
T Consensus 14 v~v~d~~~~--~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~----------------------- 66 (391)
T 1l0q_A 14 ISVIDVTSN--KV--TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----------------------- 66 (391)
T ss_dssp EEEEETTTT--EE--EEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------
T ss_pred EEEEECCCC--eE--EEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------
Confidence 456776542 11 1233445669999999999976 6777999999999977652
Q ss_pred ccccccCCcccceeeeeeeccceeEEEEeecCCCcEEE-EEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccc
Q 011257 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (490)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (490)
...+..+ ..+.+++|+| ++.+++ +++.|+.|++||+.+++.........
T Consensus 67 ~~~~~~~-------------~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--------------- 116 (391)
T 1l0q_A 67 IATVPAG-------------SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--------------- 116 (391)
T ss_dssp EEEEECS-------------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------------
T ss_pred EEEEECC-------------CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------------
Confidence 2223322 4589999997 556665 45567999999999998766554331
Q ss_pred cccCceEEeccCCccccccccCCCCcc-ccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEE-E
Q 011257 172 VSAIPKSYMANGGCGERNFGCASNDSS-FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-I 249 (490)
Q Consensus 172 ~~~~~~~~s~~g~~~~~~~~~~~~~~l-~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~ 249 (490)
.+..++|+|+|+ .+ ++++.++.|++||+ .. .+....+ ..+ ..+.+++|+|+++.+ +
T Consensus 117 -~~~~~~~s~dg~------------~l~~~~~~~~~v~~~d~-~~------~~~~~~~-~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 117 -SPLGLALSPDGK------------KLYVTNNGDKTVSVINT-VT------KAVINTV-SVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp -SEEEEEECTTSS------------EEEEEETTTTEEEEEET-TT------TEEEEEE-ECC-SSEEEEEECTTSSEEEE
T ss_pred -CcceEEECCCCC------------EEEEEeCCCCEEEEEEC-CC------CcEEEEE-ecC-CCcceEEECCCCCEEEE
Confidence 123789999998 45 68888999999992 21 2222332 222 456899999999988 4
Q ss_pred Ee-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCcccccccccee
Q 011257 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 250 ~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
++ .++.|++||+++. .....+ .+...+.+++|+|++ +.+++++ .++.|++||+.+++. +..+
T Consensus 175 ~~~~~~~v~~~d~~~~-~~~~~~--------~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~----~~~~ 240 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTN-SVIDTV--------KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKI----TARI 240 (391)
T ss_dssp EETTTTEEEEEETTTT-EEEEEE--------ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEE----EEEE
T ss_pred EeCCCCEEEEEECCCC-eEEEEE--------ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeE----EEEE
Confidence 56 7899999999854 333322 245678999999999 7777777 689999999998754 2444
Q ss_pred ccccCCCccccccccccceEEEEECCCCCEEE-EEc-CCeEEEEeccCCCCceeeeeeeccccccc---cccccCCCccc
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFD 400 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~-sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 400 (490)
..+ ..+.+++|+|+|++|+ +++ ++.|++||+.+ ++.+..+..+....... .... ......
T Consensus 241 ~~~-------------~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (391)
T 1l0q_A 241 PVG-------------PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIP-VQPVYP 305 (391)
T ss_dssp ECC-------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECS-SCCCCC
T ss_pred ecC-------------CCccEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeeccc-cccccc
Confidence 443 3578999999999884 554 69999999997 88888777665432100 0000 001111
Q ss_pred eeeEEEcCC------C--CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 401 KFECCLSGD------G--GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 401 v~~~~~s~d------~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
+......+. . ..+...+.|..+++|++.+|... .+..+ ...|+|+|....
T Consensus 306 ~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~ 363 (391)
T 1l0q_A 306 SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTV 363 (391)
T ss_dssp BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEE
T ss_pred ccccccccccccccccceEEEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEE
Confidence 112222211 1 34566677899999999887541 12222 356777776544
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=208.70 Aligned_cols=249 Identities=10% Similarity=0.076 Sum_probs=174.4
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-ccCCcccceeeeeeecc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~~~~ 113 (490)
...|.++.|+|+ +++|+.|++|++|+....... ..+ .....+..+ .+|. +
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~-------------~~~-~~~~~~~~~~~~~~------------~ 126 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI-------------LDS-KTNKVLREIEVDSA------------N 126 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE-------------EET-TTCCEEEEEECCCS------------S
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE-------------eec-CCcceeEEeecCCC------------C
Confidence 467888889988 999999999999987642100 000 000111111 2444 7
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.|.+++|+|..++.++++++.||+|++||+.+++......
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------------------------- 166 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---------------------------------------- 166 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC----------------------------------------
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----------------------------------------
Confidence 7999999974466799999999999999999876532110
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
..|...+.+++|+|++.+|++| .|+.|++||+++......
T Consensus 167 ------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~--- 207 (343)
T 3lrv_A 167 ------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS--- 207 (343)
T ss_dssp ------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE---
T ss_pred ------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc---
Confidence 1233468899999999999998 899999999996654312
Q ss_pred cCCCccCC-CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce--EEEEE
Q 011257 273 VKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI--SDIKF 349 (490)
Q Consensus 273 ~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i--~~l~~ 349 (490)
.+.. |...|++++|+|++ .+|++++ |+.|++||+++++.. ..+.... .|...+ .+++|
T Consensus 208 ----~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~----~~~~~~~---------~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 208 ----RFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT----LAYPTYT---------IPEFKTGTVTYDI 268 (343)
T ss_dssp ----ECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC----BSSCCCB---------C-----CCEEEEE
T ss_pred ----EEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc----eeecccc---------cccccccceEEEE
Confidence 2455 99999999999999 8999999 559999999987542 2222210 011223 46999
Q ss_pred CCCCCEEEEE-c-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC---CCCEEEEeecCCeEEE
Q 011257 350 ARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRV 424 (490)
Q Consensus 350 sp~g~~l~sg-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~dg~i~v 424 (490)
+|+|++|+++ . ++.+++|++....+.... .. +..++|++ +.+.|++++.||.+++
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DE---------------ESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EE---------------EEECCC----CCCCEEEEEEETTEEEE
T ss_pred CCCCCEEEEecCCCCcEEEEEEcccccceEe-----cC---------------ceeEecCccccccceeEEEecCCceEE
Confidence 9999999995 3 799999999752322222 11 33778888 8899999999999998
Q ss_pred EecCCC
Q 011257 425 FGCSEG 430 (490)
Q Consensus 425 w~~~~~ 430 (490)
+-....
T Consensus 329 ~~~~~~ 334 (343)
T 3lrv_A 329 ILKTND 334 (343)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 865544
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.9e-26 Score=221.02 Aligned_cols=310 Identities=10% Similarity=0.093 Sum_probs=221.1
Q ss_pred EECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEe
Q 011257 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (490)
Q Consensus 42 ~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 121 (490)
+|+|++.++++++.|++|.+||..+++. +..+..+. . +..++|+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~s 187 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRMS 187 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEEC
Confidence 4899999999999999999999887763 33444222 2 7889999
Q ss_pred ecCCCcEEEEEeCcCeEEEEEc--cCCeEEEEeeeccCCCcCCCCCCccccccccCceEEec----cCCccccccccCCC
Q 011257 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA----NGGCGERNFGCASN 195 (490)
Q Consensus 122 p~~~~~~l~~~~~dg~i~lwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~g~~~~~~~~~~~~ 195 (490)
| +++++++++.|++|++||+ .+++........ ..+..++|+| +|+
T Consensus 188 p--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g----------------~~p~~va~sp~~~~dg~----------- 238 (543)
T 1nir_A 188 A--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG----------------IEARSVESSKFKGYEDR----------- 238 (543)
T ss_dssp T--TSCEEEEEETTSEEEEEETTSSSCEEEEEEECC----------------SEEEEEEECCSTTCTTT-----------
T ss_pred C--CCCEEEEECCCCeEEEEECcCCCCcEEEEEecC----------------CCcceEEeCCCcCCCCC-----------
Confidence 6 7789999999999999999 777665544322 2234889999 999
Q ss_pred CccccCC-CCCcEEEeeeecccccccccceeeeecc-c--------c-ccceeEEEecCCCCEEEEe--cCCcEEEEEcC
Q 011257 196 DSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAH-A--------H-DYHINSISNNSDGETFISA--DDLRINLWNLE 262 (490)
Q Consensus 196 ~~l~~~~-~~g~v~iw~~~~~~~~~~~~~~~~~~~~-~--------~-~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~ 262 (490)
++++++ .+++|.+||. .. .++.+.+.. + | ...+..+.++|++..++.. .++.|.+||+.
T Consensus 239 -~l~v~~~~~~~v~v~D~-~t------~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 239 -YTIAGAYWPPQFAIMDG-ET------LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp -EEEEEEEESSEEEEEET-TT------CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred -EEEEEEccCCeEEEEec-cc------cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 677776 5899999992 21 222222210 1 2 2368899999987766654 79999999998
Q ss_pred CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
..... ... .+ .+...+..+.|+|++ ++|+ ++..+++|.+||..++++. ..+..... .|.
T Consensus 311 ~~~~l-~~~-----~i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~g~~--------ph~ 370 (543)
T 1nir_A 311 DIDNL-TVT-----SI-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGKT--------PHP 370 (543)
T ss_dssp TSSSC-EEE-----EE-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSS--------BCC
T ss_pred CCCcc-eeE-----Ee-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----EeeccCCC--------CCC
Confidence 54322 211 11 235567789999999 6555 5556899999999998753 34443211 122
Q ss_pred cceEEEEECCC-CCEEEEEc--CCeEEEEeccCC------CCceeeeeeeccccccccccccCCCccceeeEEEcCCCCE
Q 011257 342 ASISDIKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (490)
Q Consensus 342 ~~i~~l~~sp~-g~~l~sg~--d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 412 (490)
.....+ ++|+ |.+++++. +++|.+||+.+. .+.++++.++... +..++|+||+++
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~---------------~~~v~~~pdg~~ 434 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---------------SLFIKTHPKSSH 434 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCCE
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC---------------ceEEEcCCCCCc
Confidence 323333 4676 66677763 599999999852 5677888877644 237999999999
Q ss_pred EEEee-------cCCeEEEEecCCCceeeeEe--------ccCCCceEEEEEccCCCCCCCCc
Q 011257 413 VATGS-------YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 413 l~s~~-------~dg~i~vw~~~~~~~~~~~~--------~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
|++++ .+++|.|||+.+++.....+ ..+...+..++|+|||..+..+.
T Consensus 435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 99987 37899999999998743443 45678899999999999888663
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=4e-24 Score=209.33 Aligned_cols=319 Identities=11% Similarity=0.048 Sum_probs=211.2
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEEe--cCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 38 V~~~~~s~dg~~latg~~dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
+.+++|+|||++|++++.|+.|.+||+ .+++. +..+.. . ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----------------------~~~i~~-g------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----------------------VAEIKI-G------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----------------------EEEEEC-C------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----------------------EEEEec-C------------CCc
Confidence 899999999999999999999999999 54431 233332 2 457
Q ss_pred eEEEEee--cCCCcEEEEEe-CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 116 NKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 116 ~~v~~~p--~~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..++|+| ..+|+++++++ .+++|.+||..+++............ .+..+.+...+..+.++|++..
T Consensus 225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----~~~~~~~~~~v~~i~~s~~~~~------- 293 (543)
T 1nir_A 225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----DTQTYHPEPRVAAIIASHEHPE------- 293 (543)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS----SSCCEESCCCEEEEEECSSSSE-------
T ss_pred ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc----CccccccCCceEEEEECCCCCE-------
Confidence 8899985 11566888876 58999999999988777655422100 0000001112236788888774
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~ 270 (490)
++++...++.|.+||+ ...... . ... ..+...+..++|+|++++|+++ .++.|.+||..+. +....
T Consensus 294 ----~~vs~~~~g~i~vvd~-~~~~~l---~-~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~ 361 (543)
T 1nir_A 294 ----FIVNVKETGKVLLVNY-KDIDNL---T-VTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSAL 361 (543)
T ss_dssp ----EEEEETTTTEEEEEEC-TTSSSC---E-EEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEE
T ss_pred ----EEEEECCCCeEEEEEe-cCCCcc---e-eEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEe
Confidence 6778888999999992 221110 0 011 1344567889999999987765 5899999999854 45444
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccc---cccccceeccccCCCccccccccccceEE
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSAL---CDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 346 (490)
++. ....|......+ ++|++..+++++. .|++|.+||+.+..- ..+.++++..+. ..+..
T Consensus 362 i~~---g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g------------~~~~~ 425 (543)
T 1nir_A 362 VDV---GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG------------GGSLF 425 (543)
T ss_dssp EEC---SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------------SCCCC
T ss_pred ecc---CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC------------CCceE
Confidence 322 112355444443 5787437778776 589999999987210 012245555443 56788
Q ss_pred EEECCCCCEEEEEc--------CCeEEEEeccCCCCce-eeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 011257 347 IKFARNGRHILSRD--------YMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 347 l~~sp~g~~l~sg~--------d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 417 (490)
++|+|+|++|++++ +++|.+||+.+ .+.. ..+....- ..+. +....+..++|+|+|+.|+++.
T Consensus 426 v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~-----~~~~--~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 426 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEW-----ADLG--EGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp EECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHH-----HCCC--SSCCEEEEEEECSSSSEEEEEE
T ss_pred EEcCCCCCcEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhh-----cccC--CCCCceEeccCCCCCCEEEEEe
Confidence 99999999999975 47999999997 5555 44321100 0000 0011256899999999988663
Q ss_pred -----cCCeEEEEecCCCceeeeEeccC
Q 011257 418 -----YSNLFRVFGCSEGSAESTTLEAS 440 (490)
Q Consensus 418 -----~dg~i~vw~~~~~~~~~~~~~~~ 440 (490)
.|+.|.|||.+++++ +.+++..
T Consensus 498 ~~~~~~~~~i~v~D~~t~~~-~~~i~~~ 524 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKTLKL-KAVVKDP 524 (543)
T ss_dssp ECCTTSCCEEEEEETTTTEE-EEEECCT
T ss_pred ecCCCCCCeEEEEECCCceE-EEeecCC
Confidence 379999999999987 5777654
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3.5e-25 Score=227.44 Aligned_cols=337 Identities=9% Similarity=0.050 Sum_probs=209.5
Q ss_pred cccEEEEEECCCCCEEEEecC-CC-----cEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeee
Q 011257 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~-dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~ 108 (490)
...|.+++|||||++||+++. |+ .|++||+.+++........ . ..|+.+.+.. . .........
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~-------~~~~~~~~~~-~--~~~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-V-------VLPGTETLSD-E--EKARRERQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-G-------TC---------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-h-------cccccccccc-h--hhhhhhhhh
Confidence 457999999999999999988 88 8999999877632000000 0 0000000000 0 000000000
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC---eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
+.....|.+++|+| +|++|++++. +.|++||+.++ ....+.... .....++|+|||+
T Consensus 105 ~~~~~~v~~~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~----------------~~~~~~~~SPDG~- 164 (741)
T 2ecf_A 105 IAAMTGIVDYQWSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE----------------GFATDAKLSPKGG- 164 (741)
T ss_dssp --CCEESCCCEECT--TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS----------------SCEEEEEECTTSS-
T ss_pred hccccCcceeEECC--CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC----------------cccccccCCCCCC-
Confidence 00002378899996 7778888886 99999999987 443322111 1123789999999
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc----------------ceeEEEecCCCCEEE
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY----------------HINSISNNSDGETFI 249 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~i~~~~~~~~l~ 249 (490)
+|+.++ ++.|.+||+ ... ...+.. ..+.. .+..++|+|||++|+
T Consensus 165 -----------~la~~~-~~~i~~~d~-~~g------~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~ 224 (741)
T 2ecf_A 165 -----------FVSFIR-GRNLWVIDL-ASG------RQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA 224 (741)
T ss_dssp -----------EEEEEE-TTEEEEEET-TTT------EEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE
T ss_pred -----------EEEEEe-CCcEEEEec-CCC------CEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEE
Confidence 566555 458999982 221 111111 11111 247799999999999
Q ss_pred Ee-cCC---------------------------------cEEEEEcCC-CCceeeeeecCCCccCCCCCceEEEEEcCCC
Q 011257 250 SA-DDL---------------------------------RINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTH 294 (490)
Q Consensus 250 ~~-~d~---------------------------------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 294 (490)
++ .|+ .|.+||+.+ .. ...+. ....|...+..++| |||
T Consensus 225 ~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~-----~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 225 YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWID-----LGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEEC-----CCSCSSEEEEEEEE-EET
T ss_pred EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEec-----CCCCcceEEEEEEe-CCC
Confidence 87 544 788888874 33 22221 11257788999999 999
Q ss_pred CcEEEEEeC-----CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEe
Q 011257 295 CNMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWD 368 (490)
Q Consensus 295 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd 368 (490)
+.|++++. +..|++||+.+++.. ..+..+... ....+..++|+|||+++++++ ++.++||.
T Consensus 298 -~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~~~--------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 364 (741)
T 2ecf_A 298 -QHLSFQRQSRDQKKLDLVEVTLASNQQR----VLAHETSPT--------WVPLHNSLRFLDDGSILWSSERTGFQHLYR 364 (741)
T ss_dssp -TEEEEEEEETTSSEEEEEEEETTTCCEE----EEEEEECSS--------CCCCCSCCEECTTSCEEEEECTTSSCEEEE
T ss_pred -CEEEEEEecccCCeEEEEEEECCCCceE----EEEEcCCCC--------cCCcCCceEECCCCeEEEEecCCCccEEEE
Confidence 77776653 578999999987642 223222100 001356789999999888775 47777877
Q ss_pred ccCCCCceeeeeeeccccccccccccCCCccceeeE-EEcCCCCEEEE-eecCC--eEEEEecCC-CceeeeEeccCCCc
Q 011257 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC-CLSGDGGRVAT-GSYSN--LFRVFGCSE-GSAESTTLEASKNP 443 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s-~~~dg--~i~vw~~~~-~~~~~~~~~~~~~~ 443 (490)
++..++ ...+..+... |..+ .|+||++.|+. ++.++ .++||++.. ++. ...+.. ...
T Consensus 365 ~~~~~~-~~~l~~~~~~---------------v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~-~~~l~~-~~~ 426 (741)
T 2ecf_A 365 IDSKGK-AAALTHGNWS---------------VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ-PQRLSK-APG 426 (741)
T ss_dssp ECSSSC-EEESCCSSSC---------------EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC-CEECCC-SCS
T ss_pred EcCCCC-eeeeeecceE---------------EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC-eeeccc-CCC
Confidence 764345 5566555432 3465 59999997764 44555 899999875 443 355555 667
Q ss_pred eEEEEEccCCCCCCCCc
Q 011257 444 MRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 444 v~~~~~sp~~~~~~~~~ 460 (490)
+..++||||++..+...
T Consensus 427 ~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 427 MHSASFARNASVYVDSW 443 (741)
T ss_dssp EEEEEECTTSSEEEEEE
T ss_pred ceEEEECCCCCEEEEEe
Confidence 89999999998766553
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=7.8e-24 Score=224.72 Aligned_cols=226 Identities=10% Similarity=0.057 Sum_probs=164.9
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccc---eeeeeccccccceeEEEec-CCCCEEEEe
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG---CRRIYAHAHDYHINSISNN-SDGETFISA 251 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~v~~i~~~-~~~~~l~~~ 251 (490)
..+|+|+|+ .++.+ .++.|.+|++ .......... ........|...+.+++|+ |+|+.|+++
T Consensus 249 ~~~~SpDG~------------~la~~-~~~~i~~~d~-~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~ 314 (1045)
T 1k32_A 249 PRHLNTDGR------------RILFS-KGGSIYIFNP-DTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV 314 (1045)
T ss_dssp EEEEEESSS------------CEEEE-ETTEEEEECT-TTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred eeeEcCCCC------------EEEEE-eCCEEEEecC-CceEeeeeccCcccccccccccccccceeeecCCCCCEEEEE
Confidence 457777777 55554 5889999983 1111100000 0000001244578999999 999999998
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCC-ceEEEEEcCCCCcEEEEEeCCCeEE-EEeCCCccccccccceecccc
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTE-VITSAEFHPTHCNMLAYSSSKGSIR-LIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~ 329 (490)
.++.+.+|++.... .. .+..|.. .+..++|+ ++ +.|++++.++.+. +||+.+++. ..+..+
T Consensus 315 ~~~~i~~~~~~~~~-~~--------~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~-----~~l~~~- 377 (1045)
T 1k32_A 315 SRGQAFIQDVSGTY-VL--------KVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKA-----EKFEEN- 377 (1045)
T ss_dssp ETTEEEEECTTSSB-EE--------ECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCE-----EECCCC-
T ss_pred EcCEEEEEcCCCCc-eE--------EccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCc-----eEecCC-
Confidence 78899999987433 22 2345666 89999999 98 8888888888898 999887642 222222
Q ss_pred CCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
...+..++|+|||++|++++ ++.|++||+.+ ++.......|... +..++|||
T Consensus 378 -----------~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~---------------v~~~~~Sp 430 (1045)
T 1k32_A 378 -----------LGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAM---------------ITDFTISD 430 (1045)
T ss_dssp -----------CCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSC---------------CCCEEECT
T ss_pred -----------ccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCC---------------ccceEECC
Confidence 26789999999999999875 59999999986 7766666566544 34899999
Q ss_pred CCCEEEEeecCC----------eEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 409 DGGRVATGSYSN----------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 409 d~~~l~s~~~dg----------~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
||++|++++.++ .|++||+.+++ ...+..|...+..++|+|||+.....+.
T Consensus 431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 999999887654 89999999876 4678888889999999999997766554
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.8e-22 Score=186.41 Aligned_cols=309 Identities=10% Similarity=0.095 Sum_probs=192.5
Q ss_pred EEECCCCCE-EEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 41 IEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 41 ~~~s~dg~~-latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
..|.+++++ +++++.++.|.+||..+++. ...+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI-----------------------LNQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce-----------------------eeeEEccC------------Ccc-eEE
Confidence 456666554 77788899999999987762 22233333 446 899
Q ss_pred EeecCCCcEEEEEeC-cCeEEEEEccCCeE-EEEeeeccCCCcCCCCCCccccccccCc-eEEeccCCccccccccCCCC
Q 011257 120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASND 196 (490)
Q Consensus 120 ~~p~~~~~~l~~~~~-dg~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~~~~~~~~~~~~ 196 (490)
|+| +++++++++. ++.|.+||+.+++. ........ .+.. ++|+|+|+
T Consensus 47 ~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~s~dg~------------ 96 (331)
T 3u4y_A 47 ITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ----------------SSMADVDITPDDQ------------ 96 (331)
T ss_dssp ECS--SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS----------------SCCCCEEECTTSS------------
T ss_pred EcC--CCCEEEEEeCCCCeEEEEECCCCceeEEecccCC----------------CCccceEECCCCC------------
Confidence 987 5666666554 89999999998875 33333221 1225 89999999
Q ss_pred ccccCCCCC---cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCc-EEEEEcCCCCceeee
Q 011257 197 SSFPPGGVS---SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFNI 270 (490)
Q Consensus 197 ~l~~~~~~g---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~-i~~wd~~~~~~~~~~ 270 (490)
++++...++ .|.+|| ... .+....+ .......+++|+|+|++++++ .++. |.+|++...+.....
T Consensus 97 ~l~~~~~~~~~~~i~v~d-~~~------~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYS-FLK------NKFISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEEECCCSSSSCEEEEEE-TTT------TEEEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EEEEecCCCCcccEEEEE-CCC------CCeEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 566555553 899999 221 1222222 122456899999999866654 5678 999999854443221
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
. . ........+..++|+|++ + +++++..++.|++||+.+++.. ..+..+... ..+..++|
T Consensus 168 ~-~---~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~~-------------~~~~~~~~ 228 (331)
T 3u4y_A 168 G-Q---EFISGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENI-TLLNAVGTN-------------NLPGTIVV 228 (331)
T ss_dssp E-E---EEECSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSC-EEEEEEECS-------------SCCCCEEE
T ss_pred C-C---ccccCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCccc-ceeeeccCC-------------CCCceEEE
Confidence 1 0 111234457899999999 6 5566667899999999887641 112333322 45688999
Q ss_pred CCCCCEEEEEc--CCeEEEEeccCCCCc--eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEE
Q 011257 350 ARNGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRV 424 (490)
Q Consensus 350 sp~g~~l~sg~--d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~v 424 (490)
+|||++|+.+. ++.|.+||+.+ ++. +..+..+.... .........++|+|||++|++++ .++.|.+
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKV 299 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEE
Confidence 99999887653 48899999986 554 22222220000 00111113689999999886655 4679999
Q ss_pred EecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 425 w~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
||+..... .........-....++|+..
T Consensus 300 ~d~~~~~~--~~~~~~~~~g~~~~~~~~~~ 327 (331)
T 3u4y_A 300 FTISGKVV--GYVAGIEANGGIAICHPDKH 327 (331)
T ss_dssp EETTSCEE--EECTTCCCBSCEEECCCC--
T ss_pred EEecCCcc--cceecccccCCeEEECCccc
Confidence 99986543 34444444444455666554
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=2.6e-24 Score=220.36 Aligned_cols=322 Identities=11% Similarity=0.045 Sum_probs=202.9
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+.+|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence 34688999999998876 68999999999887631 223444300 0148
Q ss_pred eEEEEeecCCCcEEEEEeCc---------CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d---------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
.+++|+| +|++|++++.+ +.+++||+.+++...+...... . .....++|||||+
T Consensus 64 ~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~-------~~~~~~~~SPdG~-- 126 (723)
T 1xfd_A 64 IRYEISP--DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS------N-------AKLQYAGWGPKGQ-- 126 (723)
T ss_dssp SEEEECT--TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC------S-------CCCSBCCBCSSTT--
T ss_pred ceEEECC--CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc------c-------ccccccEECCCCC--
Confidence 8999997 77899998764 7889999999875333221110 0 0122679999999
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc------------------ceeEEEecCCCCEE
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY------------------HINSISNNSDGETF 248 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~------------------~v~~i~~~~~~~~l 248 (490)
.|+.++. +.|.+|++ ... ...+.. ..+.. .+.+++|+|||+.|
T Consensus 127 ----------~la~~~~-~~i~~~~~-~~g------~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l 187 (723)
T 1xfd_A 127 ----------QLIFIFE-NNIYYCAH-VGK------QAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL 187 (723)
T ss_dssp ----------CEEEEET-TEEEEESS-SSS------CCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE
T ss_pred ----------EEEEEEC-CeEEEEEC-CCC------ceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEE
Confidence 5666554 78999982 221 111111 22222 23789999999999
Q ss_pred EEe-cCC----------------------------------cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC
Q 011257 249 ISA-DDL----------------------------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (490)
Q Consensus 249 ~~~-~d~----------------------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 293 (490)
+++ .++ .|++||+.+......+. . +..+..+...+..++|+||
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-P-PDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-C-CCCGGGSSEEEEEEEESSS
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-C-CccCCCccceeEEEEEeCC
Confidence 987 332 68888887443222110 0 0111224678899999999
Q ss_pred CCcEEEEEeC----CCeEEEEeCCCccccccccceeccccCCCccccccccccce----EEEEECCCCCEEEEE---cCC
Q 011257 294 HCNMLAYSSS----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI----SDIKFARNGRHILSR---DYM 362 (490)
Q Consensus 294 ~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i----~~l~~sp~g~~l~sg---~d~ 362 (490)
| +++++... +..|++||+.+++.. ..+..+. ...+ ..++|+|||+.|+.. .++
T Consensus 266 g-~~l~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~-----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 266 T-KVAVTWLNRAQNVSILTLCDATTGVCT----KKHEDES-----------EAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp S-EEEEEEEETTSCEEEEEEEETTTCCEE----EEEEEEC-----------SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred C-eEEEEEEcCCCCeEEEEEEeCCCCcce----EEEEecc-----------CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 9 77766643 357999999987632 2222211 0222 378999999977753 246
Q ss_pred ------eEEEEeccCCCCc--eeeeeeeccccccccccccCCCcccee-eEEEcCCCCEEEEeecC---CeEEEEecCCC
Q 011257 363 ------TLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYS---NLFRVFGCSEG 430 (490)
Q Consensus 363 ------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~s~~~d---g~i~vw~~~~~ 430 (490)
.|.+||+...+.. ...+..+... +. .++|+|||+.|+..+.+ +.++||++...
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~---------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQSITSGDWD---------------VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCCSSSC---------------EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCcceeEEEEEeccCCCCccceeEeecCCeE---------------EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5666663221331 3333322111 22 36899999999866654 78999998753
Q ss_pred ce-eeeEecc---CCCceEEEEEccCCCCCCCC
Q 011257 431 SA-ESTTLEA---SKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 431 ~~-~~~~~~~---~~~~v~~~~~sp~~~~~~~~ 459 (490)
.. ....+.. |...+..++||||++..+..
T Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp TTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred CCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 21 1233443 56778999999999876654
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.3e-22 Score=186.41 Aligned_cols=280 Identities=10% Similarity=0.078 Sum_probs=175.5
Q ss_pred cceeEEEEeecCCCcEEEEEeCc-CeEEEEEcc--CCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTND-KTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~d-g~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
..+.+++|+| ++.++++++.+ +.|++|++. +++.......... ..+..++|+|+|+
T Consensus 38 ~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~s~dg~----- 96 (343)
T 1ri6_A 38 GQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP--------------GSLTHISTDHQGQ----- 96 (343)
T ss_dssp SCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--------------SCCSEEEECTTSS-----
T ss_pred CCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--------------CCCcEEEEcCCCC-----
Confidence 5688899996 66788888776 999999998 6665544333321 1233789999999
Q ss_pred cccCCCCccc-cCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCc
Q 011257 190 FGCASNDSSF-PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 266 (490)
Q Consensus 190 ~~~~~~~~l~-~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~ 266 (490)
+++ ++..++.|.+||+. .. ......... . ....+.+++|+|+++.++++ .++.|.+||+...+.
T Consensus 97 -------~l~~~~~~~~~i~~~d~~-~~---~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 163 (343)
T 1ri6_A 97 -------FVFVGSYNAGNVSVTRLE-DG---LPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 163 (343)
T ss_dssp -------EEEEEETTTTEEEEEEEE-TT---EEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred -------EEEEEecCCCeEEEEECC-CC---ccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence 554 44558899999932 11 111222222 2 22457889999999977775 699999999985343
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEE-EEEeCCCeEEEEeCCC--ccccccccceeccccCCCccccccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
....... . ........+..++|+|++ +.+ +++..++.|.+||+.. ++.. ....+...... ......
T Consensus 164 ~~~~~~~-~-~~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~------~~~~~~ 232 (343)
T 1ri6_A 164 LVAQDPA-E-VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPEN------FSDTRW 232 (343)
T ss_dssp EEEEEEE-E-EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTT------CCSCCC
T ss_pred eeeeccc-c-cccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcc------ccccCC
Confidence 3221100 0 011123567899999999 655 5555899999999964 3211 01111110000 001135
Q ss_pred eEEEEECCCCCEEEE-E-cCCeEEEEeccCCCC---ceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-
Q 011257 344 ISDIKFARNGRHILS-R-DYMTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS- 417 (490)
Q Consensus 344 i~~l~~sp~g~~l~s-g-~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~- 417 (490)
+..++|+|+|++|++ + .++.|.+||+..... .+..+..+.. +..++|+|+|++|++++
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----------------PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----------------CCCEEECTTSSEEEEECT
T ss_pred ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----------------cceEEECCCCCEEEEecC
Confidence 678999999998875 4 359999999983122 2222222221 23899999999888877
Q ss_pred cCCeEEEEecC--CCcee-eeEeccCCCceEEEEEccCCC
Q 011257 418 YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 418 ~dg~i~vw~~~--~~~~~-~~~~~~~~~~v~~~~~sp~~~ 454 (490)
.++.|.+|+++ +++.. +..+.. .....+++|.|+.+
T Consensus 297 ~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 297 KSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred CCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 68999999554 56432 233333 24567888887654
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=6e-22 Score=188.18 Aligned_cols=260 Identities=10% Similarity=0.015 Sum_probs=185.0
Q ss_pred ccccccEEEEEECC--------------CCCEEEEecCC------CcEEEEEecCCCCCCCcccccccccceeecCCccc
Q 011257 32 VQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (490)
Q Consensus 32 ~~h~~~V~~~~~s~--------------dg~~latg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (490)
..|...+..+++++ .+..++.++.+ +.|++||+....
T Consensus 114 ~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~----------------------- 170 (415)
T 2hqs_A 114 KVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN----------------------- 170 (415)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-----------------------
T ss_pred EcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-----------------------
Confidence 35666666666664 25566666554 799999987533
Q ss_pred cccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcC---eEEEEEccCCeEEEEeeeccCCCcCCCCCCcc
Q 011257 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (490)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (490)
...+.+|. ..|.+++|+| +|++|++++.|+ .|++||+.+++...+..... .+
T Consensus 171 -~~~l~~~~------------~~v~~~~~Sp--dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~---------~~- 225 (415)
T 2hqs_A 171 -QFVVHRSP------------QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---------HN- 225 (415)
T ss_dssp -CEEEEEES------------SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS---------CE-
T ss_pred -CEEEeCCC------------CcceeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC---------cc-
Confidence 34466676 7799999997 677999998875 99999999988765443221 11
Q ss_pred ccccccCceEEeccCCccccccccCCCCccc-cCCCCCc--EEEeeeecccccccccceeeeeccccccceeEEEecCCC
Q 011257 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSF-PPGGVSS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (490)
Q Consensus 169 ~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~-~~~~~g~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (490)
..++|+|||+ .|+ +++.++. |.+|| +.. .+. .. +..|...+.+++|+|+|
T Consensus 226 ------~~~~~spdg~------------~la~~~~~~g~~~i~~~d-~~~------~~~-~~-l~~~~~~~~~~~~spdg 278 (415)
T 2hqs_A 226 ------GAPAFSPDGS------------KLAFALSKTGSLNLYVMD-LAS------GQI-RQ-VTDGRSNNTEPTWFPDS 278 (415)
T ss_dssp ------EEEEECTTSS------------EEEEEECTTSSCEEEEEE-TTT------CCE-EE-CCCCSSCEEEEEECTTS
T ss_pred ------cCEEEcCCCC------------EEEEEEecCCCceEEEEE-CCC------CCE-Ee-CcCCCCcccceEECCCC
Confidence 2789999999 455 5665554 88888 221 111 12 25677889999999999
Q ss_pred CEEEEe-c-CC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCcccc
Q 011257 246 ETFISA-D-DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALC 318 (490)
Q Consensus 246 ~~l~~~-~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~ 318 (490)
+.|+++ . ++ .|.+||+.+.. .. .+..+...+.+++|+|+| ++|++++.+ ..|++||+.+++.
T Consensus 279 ~~l~~~s~~~g~~~i~~~d~~~~~-~~--------~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~~- 347 (415)
T 2hqs_A 279 QNLAFTSDQAGRPQVYKVNINGGA-PQ--------RITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGV- 347 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSC-CE--------ECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCCE-
T ss_pred CEEEEEECCCCCcEEEEEECCCCC-EE--------EEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCCE-
Confidence 988886 4 45 67777887443 22 234466788999999999 888877764 5899999998753
Q ss_pred ccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CC---eEEEEeccCCCCceeeeeeecccccccccccc
Q 011257 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (490)
..+..+ ..+.+++|+|||++|++++ ++ .|.+||+. +.....+..+...
T Consensus 348 ----~~l~~~-------------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~--g~~~~~l~~~~~~--------- 399 (415)
T 2hqs_A 348 ----QVLSST-------------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLPATDGQ--------- 399 (415)
T ss_dssp ----EECCCS-------------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT--SCCEEECCCSSSE---------
T ss_pred ----EEecCC-------------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC--CCcEEEeeCCCCC---------
Confidence 223222 2588999999999998864 43 79999987 6677788877665
Q ss_pred CCCccceeeEEEcCCCC
Q 011257 395 NDSIFDKFECCLSGDGG 411 (490)
Q Consensus 395 ~~~~~~v~~~~~s~d~~ 411 (490)
|.+++|+|.-.
T Consensus 400 ------v~~~~~~~~~~ 410 (415)
T 2hqs_A 400 ------VKFPAWSPYLH 410 (415)
T ss_dssp ------EEEEEECCCCC
T ss_pred ------CcCCccccccc
Confidence 55999999643
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=5e-21 Score=178.25 Aligned_cols=273 Identities=7% Similarity=0.009 Sum_probs=192.6
Q ss_pred ccceeEEEEeecCCCcEEEEEeC-------cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 112 EEKINKIRWCQSANSALYLLSTN-------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~-------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
...+..++|+| +++++++++. ++.|.+||..+++......... .+..++|+|+|+
T Consensus 40 ~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~s~dg~ 101 (353)
T 3vgz_A 40 GKGAYEMAYSQ--QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----------------KPFGATINNTTQ 101 (353)
T ss_dssp ESSEEEEEEET--TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----------------CCCSEEEETTTT
T ss_pred ccCccceEECC--CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----------------CcceEEECCCCC
Confidence 36688999997 5567777653 6789999999988766655432 133789999998
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccc--------cceeEEEecCCCCEEEEe---cC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD--------YHINSISNNSDGETFISA---DD 253 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~l~~~---~d 253 (490)
. ++++...++.|.+|| .... +....+..++. ..+.+++|+|+++.++++ .+
T Consensus 102 ~-----------l~v~~~~~~~v~~~d-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 163 (353)
T 3vgz_A 102 T-----------LWFGNTVNSAVTAID-AKTG------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE 163 (353)
T ss_dssp E-----------EEEEETTTTEEEEEE-TTTC------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS
T ss_pred E-----------EEEEecCCCEEEEEe-CCCC------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC
Confidence 4 345556688999999 2211 11222211111 126789999999987775 37
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 333 (490)
+.|.+||..+.. .... +..+...+.+++|+|++ +.+++++.++.|.+||+.+++.. ..+....
T Consensus 164 ~~i~~~d~~~~~-~~~~-------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~---- 226 (353)
T 3vgz_A 164 SVIWVVDGGNIK-LKTA-------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD---- 226 (353)
T ss_dssp CEEEEEETTTTE-EEEE-------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC----
T ss_pred ceEEEEcCCCCc-eEEE-------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC----
Confidence 889999998443 3332 22234457789999999 88888999999999999987643 2332211
Q ss_pred cccccccccceEEEEECCCCCEEEEE-cC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 334 RSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 334 ~~~~~~h~~~i~~l~~sp~g~~l~sg-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
.++...+..++|+|+|++++.+ .+ +.|.+||+.+ ++.+..+..... ..++|+|+++
T Consensus 227 ----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~ 284 (353)
T 3vgz_A 227 ----DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARN 284 (353)
T ss_dssp ----SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTT
T ss_pred ----CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCC
Confidence 0122457889999999988775 33 9999999987 777777664332 1789999999
Q ss_pred EEEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 412 RVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 412 ~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
++++++ .++.|.+||..+++. +..+... ..+..++|+||++....+..
T Consensus 285 ~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 285 EAYVTHRQAGKVSVIDAKSYKV-VKTFDTP-THPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-EEEEECC-SEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEECCCCeEEEEECCCCeE-EEEEecC-CCCCeEEEcCCCCEEEEEEc
Confidence 766555 689999999999876 4555544 46899999999996655543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=8.1e-22 Score=201.26 Aligned_cols=276 Identities=11% Similarity=0.075 Sum_probs=181.0
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..|.+++|+|+ ..++.+ .++.|++||+.+++......... ....++|+|||+
T Consensus 82 ~~v~~~~~spd---~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~----------------~~~~~~~SpdG~-------- 133 (706)
T 2z3z_A 82 FPSFRTLDAGR---GLVVLF-TQGGLVGFDMLARKVTYLFDTNE----------------ETASLDFSPVGD-------- 133 (706)
T ss_dssp CCCEEEEETTT---TEEEEE-ETTEEEEEETTTTEEEEEECCTT----------------CCTTCEECTTSS--------
T ss_pred cCceeEEECCC---CeEEEE-ECCEEEEEECCCCceEEccCCcc----------------cccCCcCCCCCC--------
Confidence 45899999973 355555 35999999999987665543321 122789999999
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc--------------ceeEEEecCCCCEEEEe-c-----
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY--------------HINSISNNSDGETFISA-D----- 252 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--------------~v~~i~~~~~~~~l~~~-~----- 252 (490)
.|+. ..++.|.+|++... .....+..+.. ..+.. .+.+++|+|||++|+++ .
T Consensus 134 ----~la~-~~~~~i~v~~~~~~--~~~~g~~~~~~-~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 134 ----RVAY-VRNHNLYIARGGKL--GEGMSRAIAVT-IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV 205 (706)
T ss_dssp ----EEEE-EETTEEEEEECBCT--TSCCCCCEESC-SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred ----EEEE-EECCeEEEEecCcc--cccCCCcEEec-cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence 5665 36799999993220 00001111111 11112 25789999999999986 2
Q ss_pred ----------------------------CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC
Q 011257 253 ----------------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (490)
Q Consensus 253 ----------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 304 (490)
+..|++||+.+.. ...+. ....|...+..++|+|+| +.|++++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~ 278 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVN 278 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEEC
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeC
Confidence 2568999997443 22211 113567789999999999 888887777
Q ss_pred C-----eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC--CCCEEEEEc-CCeEEEEeccCCCCce
Q 011257 305 G-----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPV 376 (490)
Q Consensus 305 g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp--~g~~l~sg~-d~~i~iwd~~~~~~~~ 376 (490)
+ .|++||+.+++.. ..+...... .....+..++|+| ||+++++++ ++.++||+++..+..+
T Consensus 279 ~~~~~~~v~~~d~~~g~~~----~~~~~~~~~-------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFV----RTLFVETDK-------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp TTSCEEEEEEEETTTCCEE----EEEEEEECS-------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred CCCCeeEEEEEECCCCcee----eEEEEccCC-------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 5 8999999987322 222111100 0001246789999 999988875 5888999887436666
Q ss_pred eeeeeeccccccccccccCCCccceee-EEEcCCCCEEEEeec-CC----eEEEEecCCCceeeeEeccCCCceEEEEEc
Q 011257 377 ATFQVHEHLRPKLCDLYENDSIFDKFE-CCLSGDGGRVATGSY-SN----LFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~s~~~-dg----~i~vw~~~~~~~~~~~~~~~~~~v~~~~~s 450 (490)
..+..+... +.. ++|+||++.|+.++. ++ .|+.||+.+++. ..+. +...+..++||
T Consensus 348 ~~l~~~~~~---------------v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~-~~~~~~~~~~s 409 (706)
T 2z3z_A 348 RQVTKGEWE---------------VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDLT-PESGMHRTQLS 409 (706)
T ss_dssp EECCCSSSC---------------EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EESC-CSSSEEEEEEC
T ss_pred EecCCCCeE---------------EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eecc-CCCceEEEEEC
Confidence 666554432 334 799999998776554 44 677777777653 3343 66779999999
Q ss_pred cCCCCCCCCc
Q 011257 451 PSRPSRPLGS 460 (490)
Q Consensus 451 p~~~~~~~~~ 460 (490)
||++..+...
T Consensus 410 pdg~~l~~~~ 419 (706)
T 2z3z_A 410 PDGSAIIDIF 419 (706)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9998766553
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=2.5e-21 Score=179.02 Aligned_cols=280 Identities=9% Similarity=0.081 Sum_probs=186.2
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccc-cCCcccceeeeeeecc-ceeEEEEeecCC
Q 011257 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (490)
Q Consensus 48 ~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~h~~~~~~~~~~~~~~-~V~~v~~~p~~~ 125 (490)
++|++++.++.|.+||..+++. ...+. ++. . .+..++|+| +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~s~--d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMVAP--G 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEECT--T
T ss_pred cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEEcC--C
Confidence 4789999999999999877652 12222 221 1 367799986 5
Q ss_pred CcEE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCC--
Q 011257 126 SALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (490)
Q Consensus 126 ~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~-- 202 (490)
+..+ +++..++.|.+||+.+++........... .....+..++|+|+|+ +++++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~~~~s~dg~------------~l~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE----------ERVKSLFGAALSPDGK------------TLAIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT----------EEEECTTCEEECTTSS------------EEEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc----------cccccccceEECCCCC------------EEEEEecc
Confidence 5555 55667899999999998766544432100 0001234789999998 556554
Q ss_pred ----------CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 203 ----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 203 ----------~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
.++.|.+||+ .. .+....+ . ....+..++|+|++++|+++ ++.|.+||+.+.. ....+.
T Consensus 103 ~~~~~~~~~~~~~~i~v~d~-~~------~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~-~~~~~~ 171 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYDA-ET------LSRRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGT-LVEDKP 171 (337)
T ss_dssp EEECSSCEEECCCEEEEEET-TT------TEEEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTE-EEEEEC
T ss_pred cccccccccccCceEEEEEC-CC------CcEEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCc-Eeeeee
Confidence 5799999992 21 1122222 1 13457789999999988887 6889999998443 333221
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCC-----------------------eEEEEeCCCccccccccceeccc
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
......+ +.|+|++ ..++..+ .++ .|.+||+.+++.. ...+..
T Consensus 172 -----~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~- 238 (337)
T 1pby_B 172 -----IQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRI- 238 (337)
T ss_dssp -----STTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEE-
T ss_pred -----ccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCC-
Confidence 1111122 2688988 5443333 333 4689999887642 111222
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
+...+.+++|+|||++++++ ++.|.+||+.+ ++.+..+..+.. +.+++|+|
T Consensus 239 -----------~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~ 289 (337)
T 1pby_B 239 -----------MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVST 289 (337)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECT
T ss_pred -----------CCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEECC
Confidence 22467889999999999988 68999999986 666666654322 24899999
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEeccC
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 440 (490)
||++|++++.++.|++||+.+++. +..+..+
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~-~~~~~~~ 320 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEK-KGQVDLP 320 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCE-EEEEECG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcE-EEEEEcC
Confidence 999999989999999999999876 4555443
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.2e-21 Score=177.55 Aligned_cols=257 Identities=11% Similarity=0.115 Sum_probs=173.8
Q ss_pred EecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEE
Q 011257 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (490)
Q Consensus 52 tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~ 131 (490)
.++.|+.|++||+.+++ ...+..|. ..|.+++|+| ++.+|++
T Consensus 17 ~~~~~~~i~~~d~~~~~------------------------~~~~~~~~------------~~v~~~~~sp--dg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK------------------------MRVVWQTP------------ELFEAPNWSP--DGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTE------------------------EEEEEEES------------SCCEEEEECT--TSSEEEE
T ss_pred CCCcceeEEEEeCCCCc------------------------eeeeccCC------------cceEeeEECC--CCCEEEE
Confidence 45678999999988765 22344455 7799999997 6678888
Q ss_pred EeCcCeEEEEEccC-CeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCC--CCCcEE
Q 011257 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG--GVSSLR 208 (490)
Q Consensus 132 ~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~--~~g~v~ 208 (490)
++ ++.|++||+.+ ++......... . .....++|+|+|+ ++++++ .++..+
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~~~~-------~-------~~~~~~~~spdg~------------~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDTGFA-------T-------ICNNDHGISPDGA------------LYAISDKVEFGKSA 111 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCCTTC-------C-------CBCSCCEECTTSS------------EEEEEECTTTSSCE
T ss_pred Ec-CCeEEEEeCCCCCCceEeccccc-------c-------ccccceEECCCCC------------EEEEEEeCCCCcce
Confidence 76 88999999998 76554432210 0 1123789999999 666666 446777
Q ss_pred EeeeecccccccccceeeeeccccccceeEEEecCCCCEEE-Ee-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceE
Q 011257 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (490)
Q Consensus 209 iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (490)
+|.+..... . ...+ ..+ ..+..++|+|+++.|+ ++ .++.+++|++........ .+..+...+.
T Consensus 112 l~~~~~~~~--~----~~~~-~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~ 176 (297)
T 2ojh_A 112 IYLLPSTGG--T----PRLM-TKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-------RLTHGEGRND 176 (297)
T ss_dssp EEEEETTCC--C----CEEC-CSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-------ECCCSSSCEE
T ss_pred EEEEECCCC--c----eEEe-ecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-------EcccCCCccc
Confidence 776211111 1 1111 222 3478899999999888 45 789999999753332222 3456778899
Q ss_pred EEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C---
Q 011257 287 SAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--- 361 (490)
Q Consensus 287 ~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d--- 361 (490)
+++|+|++ +.|++++ .++.+++|++...... ...+..+ ...+..++|+|+|++|++++ +
T Consensus 177 ~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 177 GPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSS---VERITDS------------AYGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp EEEECTTS-SEEEEEECTTSSCEEEEEETTSSC---EEECCCC------------SEEEEEEEECTTSSEEEEEEEETTC
T ss_pred cceECCCC-CEEEEEecCCCCccEEEECCCCCC---cEEEecC------------CcccCCeEECCCCCEEEEEEcCCCC
Confidence 99999999 7666555 5899999988632111 2333332 26788999999999998753 2
Q ss_pred --------CeEEEEeccCCCCceee--eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCC
Q 011257 362 --------MTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (490)
Q Consensus 362 --------~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 420 (490)
+.|.+||+.. ++.... +..|... +..++|+|++++|++++.+.
T Consensus 241 ~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGT---------------MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTT---------------SCSCCBCTTSSEEEEEEECC
T ss_pred CcccccCceEEEEEecCC-CCceeeeccCCCCcc---------------cccceECCCCCEEEEEEecc
Confidence 5699999986 554333 3344433 34889999999999888654
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=4.1e-22 Score=180.52 Aligned_cols=255 Identities=11% Similarity=0.119 Sum_probs=176.5
Q ss_pred EeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEee
Q 011257 132 STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPV 211 (490)
Q Consensus 132 ~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~ 211 (490)
++.|++|++||+.+++......... . ...++|+|+|+ ++++++ ++.|.+||
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~---------~-------v~~~~~spdg~------------~l~~~~-~~~i~~~d 68 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPE---------L-------FEAPNWSPDGK------------YLLLNS-EGLLYRLS 68 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESS---------C-------CEEEEECTTSS------------EEEEEE-TTEEEEEE
T ss_pred CCcceeEEEEeCCCCceeeeccCCc---------c-------eEeeEECCCCC------------EEEEEc-CCeEEEEe
Confidence 4678999999999998776555432 1 22789999999 666654 78999999
Q ss_pred eecc-cccccccceeeeecccc-ccceeEEEecCCCCEEEEe-c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceE
Q 011257 212 VVTS-QETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (490)
Q Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (490)
+ .. .+ ..... ..+ ...+.+++|+|++++|+++ . ++...+|.+......... +.. ...+.
T Consensus 69 ~-~~~~~------~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~-~~~~~ 132 (297)
T 2ojh_A 69 L-AGDPS------PEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTK-NLPSY 132 (297)
T ss_dssp S-SSCCS------CEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCS-SSSEE
T ss_pred C-CCCCC------ceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eec-CCCcc
Confidence 3 22 11 11122 333 4678899999999999987 3 345666655422222221 222 23488
Q ss_pred EEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-CCe
Q 011257 287 SAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMT 363 (490)
Q Consensus 287 ~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d~~ 363 (490)
.++|+|++ +.|+ ++..++.+++|+++..... ...+..+ ...+.+++|+|+|++|+.+ . ++.
T Consensus 133 ~~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~------------~~~~~~~~~s~dg~~l~~~~~~~~~ 196 (297)
T 2ojh_A 133 WHGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV---ETRLTHG------------EGRNDGPDYSPDGRWIYFNSSRTGQ 196 (297)
T ss_dssp EEEECTTS-SEEEEEEEETTEEEEEEEETTTCC---EEECCCS------------SSCEEEEEECTTSSEEEEEECTTSS
T ss_pred ceEECCCC-CEEEEEECCCCceEEEEEECCCCc---ceEcccC------------CCccccceECCCCCEEEEEecCCCC
Confidence 99999999 6555 7888999999986432111 1222222 2678999999999988865 3 589
Q ss_pred EEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC-----------CeEEEEecCCCce
Q 011257 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSA 432 (490)
Q Consensus 364 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----------g~i~vw~~~~~~~ 432 (490)
+++|+++..+..+..+..+... +..++|+|+|++|++++.+ +.|++||+.+++.
T Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 197 MQIWRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CEEEEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ccEEEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9999987435666666555433 4589999999999988876 5699999998865
Q ss_pred e-eeEeccCCCceEEEEEccCCCCCCCCccC
Q 011257 433 E-STTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 433 ~-~~~~~~~~~~v~~~~~sp~~~~~~~~~~~ 462 (490)
. +..+..|...+..++|+|+++....++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 262 ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred eeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 2 23345788899999999999877666543
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=6.1e-21 Score=177.30 Aligned_cols=290 Identities=10% Similarity=0.090 Sum_probs=178.1
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecC---CCcEEEEEecCCCCCCCcccccccccceeecCCc
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~ 89 (490)
....|.++..-++........+...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------- 75 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------- 75 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------------------
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------------------
Confidence 345677665323333333445667788999999999 555543 68999999975541
Q ss_pred cccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEe-CcCeEEEEEcc-CCeEEEEeeeccCCCcCCCCCCc
Q 011257 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~-~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~ 167 (490)
+.+..+..+. ..+..++|+| ++++|++++ .++.|++|++. ++...........
T Consensus 76 -~~~~~~~~~~------------~~p~~~a~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~---------- 130 (347)
T 3hfq_A 76 -HKLNTVVAPG------------TPPAYVAVDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS---------- 130 (347)
T ss_dssp -EEEEEEEEES------------CCCSEEEEET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC----------
T ss_pred -EEeeeeecCC------------CCCEEEEECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC----------
Confidence 1122233343 5688899996 677888877 78999999995 3443332221100
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
+. ... ...+...+.+++|+|+|++
T Consensus 131 ---------------~~---------------------------------~p~--------~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 131 ---------------GH---------------------------------GPR--------PEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp ---------------CC---------------------------------CSS--------TTCSSCCEEEEEECTTSCE
T ss_pred ---------------CC---------------------------------CCC--------ccccCCCceEEEECCCCcE
Confidence 00 000 0112245788999999996
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCC--ccccccccc
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSK 323 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~ 323 (490)
+++. .++.|.+|++...+........ . ......+..++|+|+| + +++++..++.|.+|++.. ++.. .+.
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~---~-~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~ 227 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVL---T-MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLG 227 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEE---E-CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEE
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeE---E-cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--Eee
Confidence 6666 6889999999843332221100 1 1123357789999999 6 555567789999999874 3311 111
Q ss_pred eeccccCCCccccccccccceEEEEECCCCCEEEE-Ec-CCeEEEEeccCCC--CceeeeeeeccccccccccccCCCcc
Q 011257 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIF 399 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~-d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (490)
.+...... +. ....+..++|+|||++|++ .. ++.|.+|++...+ ..+..+..+...
T Consensus 228 ~~~~~~~~-----~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-------------- 287 (347)
T 3hfq_A 228 IVKTIPAD-----YT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-------------- 287 (347)
T ss_dssp EEESSCTT-----CC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC--------------
T ss_pred eeeecCCC-----CC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC--------------
Confidence 22111100 00 0135788999999998855 43 5999999997422 222333322211
Q ss_pred ceeeEEEcCCCCEEEEeec-CCeEEEE--ecCCCce
Q 011257 400 DKFECCLSGDGGRVATGSY-SNLFRVF--GCSEGSA 432 (490)
Q Consensus 400 ~v~~~~~s~d~~~l~s~~~-dg~i~vw--~~~~~~~ 432 (490)
+..++|+|||++|++++. ++.|.+| |..+|+.
T Consensus 288 -~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 288 -PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp -CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 238999999999888875 4899999 5556654
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.3e-21 Score=205.77 Aligned_cols=286 Identities=10% Similarity=0.052 Sum_probs=198.5
Q ss_pred ccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..|...+.++.|+++ .++++++.|+.+.||.+..... ....+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~~----------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSFT----------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCCC-----------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCCC-----------
Confidence 468899999999998 6777888899999999864221 022333343
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEe-ccCCcccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNF 190 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~~ 190 (490)
.+..++|+| +|..++.+ .++.|++|++....+.. ....... ..............++|+ |+|+
T Consensus 246 --~~~~~~~Sp--DG~~la~~-~~~~i~~~d~~~~~l~~-l~~~~~~----~~~~~~~~~~~v~~~~~S~pdG~------ 309 (1045)
T 1k32_A 246 --DYYPRHLNT--DGRRILFS-KGGSIYIFNPDTEKIEK-IEIGDLE----SPEDRIISIPSKFAEDFSPLDGD------ 309 (1045)
T ss_dssp --SSCEEEEEE--SSSCEEEE-ETTEEEEECTTTCCEEE-CCCCCCC----BCCSEEEECGGGGEEEEEECGGG------
T ss_pred --CcceeeEcC--CCCEEEEE-eCCEEEEecCCceEeee-eccCccc----ccccccccccccceeeecCCCCC------
Confidence 255679997 56677777 48999999996555442 1111000 000000111123488999 9999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccccc-ceeEEEecCCCCEEEEe-cCCcEE-EEEcCCCCce
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEISNQS 267 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~-~d~~i~-~wd~~~~~~~ 267 (490)
.++.++ ++.+.+|+ .... ... . ...|.. .+..++|+ +|+.|+.+ .+..+. +|++.... .
T Consensus 310 ------~la~~~-~~~i~~~~-~~~~------~~~-~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~ 371 (1045)
T 1k32_A 310 ------LIAFVS-RGQAFIQD-VSGT------YVL-K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-A 371 (1045)
T ss_dssp ------CEEEEE-TTEEEEEC-TTSS------BEE-E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-E
T ss_pred ------EEEEEE-cCEEEEEc-CCCC------ceE-E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-c
Confidence 566555 78899988 2211 111 1 245555 78899999 99999988 777788 88987432 2
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
. .+.+|...+..++|+|+| +.|++++.++.|++||+.+++.. ..+..+ ...+.++
T Consensus 372 ~--------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~~~~------------~~~v~~~ 426 (1045)
T 1k32_A 372 E--------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIERSR------------EAMITDF 426 (1045)
T ss_dssp E--------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEECS------------SSCCCCE
T ss_pred e--------EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----EeccCC------------CCCccce
Confidence 2 234677889999999999 99999999999999999987642 222233 3678999
Q ss_pred EECCCCCEEEEEc-C----------CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 011257 348 KFARNGRHILSRD-Y----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (490)
Q Consensus 348 ~~sp~g~~l~sg~-d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 416 (490)
+|||||++|++++ + +.|++||+.+ ++ +..+..+... +..++|+|||++|+++
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~---------------~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSH---------------DYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSB---------------EEEEEECTTSCEEEEE
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcc---------------cCCceEcCCCCEEEEE
Confidence 9999999998753 2 4999999985 44 5555555433 3478999999999999
Q ss_pred ecCCeEEEEec
Q 011257 417 SYSNLFRVFGC 427 (490)
Q Consensus 417 ~~dg~i~vw~~ 427 (490)
+.++...+|+.
T Consensus 490 s~~~~~~~~~~ 500 (1045)
T 1k32_A 490 SYRSLDPSPDR 500 (1045)
T ss_dssp ESCCCCCEECS
T ss_pred ecccCCcCcch
Confidence 98877777664
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.6e-21 Score=199.16 Aligned_cols=295 Identities=12% Similarity=0.051 Sum_probs=187.4
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
..|.+++|||| .+++.+ .++.|++||+.+++. ..+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~------------------------~~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV------------------------TYLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE------------------------EEEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce------------------------EEccCCc------------ccc
Confidence 56999999999 566555 359999999977651 2233344 557
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccC-----CeEEEEeeeccCCCcCCCCCC-cc-ccccccCceEEeccCCcccc
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IF-GSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~s~~g~~~~~ 188 (490)
.+++|+| +|++|+++ .|+.|++|++.+ ++...+....... ..+|. +. ........++|+|||+
T Consensus 124 ~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~---~~~g~~~~~ee~~~~~~~~~SpDg~---- 193 (706)
T 2z3z_A 124 ASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET---LVYGQAVHQREFGIEKGTFWSPKGS---- 193 (706)
T ss_dssp TTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT---EEESSCCGGGCTTCCCSEEECTTSS----
T ss_pred cCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC---eEcccchhhhhcCCCceEEECCCCC----
Confidence 8899997 67788885 689999999998 7655433222110 00000 00 0001124789999999
Q ss_pred ccccCCCCccccCC---------------------------------CCCcEEEeeeecccccccccceeeeec-ccccc
Q 011257 189 NFGCASNDSSFPPG---------------------------------GVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDY 234 (490)
Q Consensus 189 ~~~~~~~~~l~~~~---------------------------------~~g~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~ 234 (490)
+|++++ .+..|.+||+ ... +...... ..|..
T Consensus 194 --------~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~-~~~------~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 194 --------CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL-ATG------KTVYLQTGEPKEK 258 (706)
T ss_dssp --------EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET-TTT------EEEECCCCSCTTC
T ss_pred --------EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC-CCC------ceEeeccCCCCce
Confidence 444443 4467888882 221 1111111 24667
Q ss_pred ceeEEEecCCCCEEEEe-cCC-----cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC--CCCcEEEEEeCCCe
Q 011257 235 HINSISNNSDGETFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGS 306 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~ 306 (490)
.+.+++|+|||+.|+++ .++ .|++||+.+......+... ........+..++|+| +| +++++++.|+.
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~ 334 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGW 334 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSS
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCc
Confidence 78999999999998886 454 8999999855233322110 0011112346789999 99 89999999999
Q ss_pred EEEEeCC-CccccccccceeccccCCCccccccccccceEE-EEECCCCCEEEEE-cC-C----eEEEEeccCCCCceee
Q 011257 307 IRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINMDSGPVAT 378 (490)
Q Consensus 307 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~g~~l~sg-~d-~----~i~iwd~~~~~~~~~~ 378 (490)
+++|++. ++.. +..+..+. ..+.. ++|+|||+.|+.+ ++ + .|..||+.+ +. ...
T Consensus 335 ~~l~~~~~~~~~----~~~l~~~~------------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~ 396 (706)
T 2z3z_A 335 NHLYLYDTTGRL----IRQVTKGE------------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKD 396 (706)
T ss_dssp CEEEEEETTSCE----EEECCCSS------------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEE
T ss_pred cEEEEEECCCCE----EEecCCCC------------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-cee
Confidence 9999876 3322 23333332 45666 7999999988764 43 4 566666654 33 333
Q ss_pred eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC----CeEEEEecCCCc
Q 011257 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----g~i~vw~~~~~~ 431 (490)
+. +... +.+++|+|||++|+....+ +.|++||+.+++
T Consensus 397 l~-~~~~---------------~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 397 LT-PESG---------------MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SC-CSSS---------------EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cc-CCCc---------------eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 33 2211 4589999999998876543 569999998875
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=2.1e-21 Score=199.31 Aligned_cols=290 Identities=9% Similarity=0.074 Sum_probs=195.6
Q ss_pred cceeEEEEeecCCCcEEEEEeC-cC-----eEEEEEccCCeEEEEeeeccCCC---------cCCCCCCccccccccCce
Q 011257 113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPE---------KAAGNGPIFGSHVSAIPK 177 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~-dg-----~i~lwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 177 (490)
..|..++|+| +|++|++++. |+ .|++||+.+++.......+.... .................+
T Consensus 37 ~~~~~~~~Sp--dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTLMKPKVAP--DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCEEEEECT--TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCceEec--CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 5589999996 7789999988 88 99999999998777665432210 000000000000112378
Q ss_pred EEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEE
Q 011257 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRIN 257 (490)
Q Consensus 178 ~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~ 257 (490)
+|+|||+ +|++++. +.|.+||+ ...... . ... +..|...+..++|+|||++|+.+.++.|+
T Consensus 115 ~~SpDg~------------~l~~~~~-~~i~~~d~-~~~~~~---~-~~~-l~~~~~~~~~~~~SPDG~~la~~~~~~i~ 175 (741)
T 2ecf_A 115 QWSPDAQ------------RLLFPLG-GELYLYDL-KQEGKA---A-VRQ-LTHGEGFATDAKLSPKGGFVSFIRGRNLW 175 (741)
T ss_dssp EECTTSS------------EEEEEET-TEEEEEES-SSCSTT---S-CCB-CCCSSSCEEEEEECTTSSEEEEEETTEEE
T ss_pred EECCCCC------------EEEEEeC-CcEEEEEC-CCCCcc---e-EEE-cccCCcccccccCCCCCCEEEEEeCCcEE
Confidence 9999999 6666655 99999993 221000 1 111 24566789999999999999998777999
Q ss_pred EEEcCCCCceeeeeecCCCccCCCCC----------------ceEEEEEcCCCCcEEEEEeCCC----------------
Q 011257 258 LWNLEISNQSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG---------------- 305 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~p~~~~~l~~~~~dg---------------- 305 (490)
+||+.+ +....+. ..+.. .+..++|+||| +.|++++.|+
T Consensus 176 ~~d~~~-g~~~~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~ 246 (741)
T 2ecf_A 176 VIDLAS-GRQMQLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRT 246 (741)
T ss_dssp EEETTT-TEEEECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCE
T ss_pred EEecCC-CCEEEec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcc
Confidence 999984 3333321 11111 14789999999 8888887765
Q ss_pred -----------------eEEEEeCCC-ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-----C
Q 011257 306 -----------------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-----Y 361 (490)
Q Consensus 306 -----------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-----d 361 (490)
.|++||+.+ ++.. .+... ..|...+..++| |||++|+.+ . +
T Consensus 247 ~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-----~~~~~---------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 247 DVIEQRYPAAGDANVQVKLGVISPAEQAQTQ-----WIDLG---------KEQDIYLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp EEEEEECCBTTSCCCEEEEEEECSSTTCCCE-----EECCC---------SCSSEEEEEEEE-EETTEEEEEEEETTSSE
T ss_pred cceEeecCCCCCCCCeeEEEEEECCCCCceE-----EecCC---------CCcceEEEEEEe-CCCCEEEEEEecccCCe
Confidence 788899887 6532 11110 013367999999 999999864 2 2
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC-CCceeeeEeccC
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAESTTLEAS 440 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~ 440 (490)
..|.+||+.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.++ +++ ...+..+
T Consensus 312 ~~i~~~d~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~ 377 (741)
T 2ecf_A 312 LDLVEVTLAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--AAALTHG 377 (741)
T ss_dssp EEEEEEETTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--EEESCCS
T ss_pred EEEEEEECCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC--eeeeeec
Confidence 7899999987 77666665554210 0002378999999999999999988888776 333 4677788
Q ss_pred CCceEEE-EEccCCCCCCCCcc
Q 011257 441 KNPMRRQ-VQTPSRPSRPLGSL 461 (490)
Q Consensus 441 ~~~v~~~-~~sp~~~~~~~~~~ 461 (490)
...+..+ .|+||+......+.
T Consensus 378 ~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 378 NWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp SSCEEEEEEEETTTTEEEEEEC
T ss_pred ceEEEeEeEEeCCCCEEEEEEe
Confidence 8888887 59999986655443
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.8e-20 Score=173.59 Aligned_cols=280 Identities=10% Similarity=0.116 Sum_probs=172.0
Q ss_pred ccccccccccccccccccccccccccEEEEEECCCCCEEEEecCC-CcEEEEEec--CCCCCCCcccccccccceeecCC
Q 011257 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHP 88 (490)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~p 88 (490)
.....|++.. -++........|...+.+++|+|+|++|++++.+ +.|.+|++. ++..
T Consensus 15 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~------------------- 74 (343)
T 1ri6_A 15 QQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------------------- 74 (343)
T ss_dssp TEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------
T ss_pred CeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------
Confidence 3455677753 1222233345678889999999999988888876 899999997 3321
Q ss_pred ccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEe-CcCeEEEEEccCCeEEEEe-eeccCCCcCCCCCC
Q 011257 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVF-DWNVHPEKAAGNGP 166 (490)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~ 166 (490)
+.+..+..+ ..+..++|+| +++++++++ .++.|.+||+..+...... .....
T Consensus 75 --~~~~~~~~~-------------~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------- 128 (343)
T 1ri6_A 75 --TFAAESALP-------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--------- 128 (343)
T ss_dssp --EEEEEEECS-------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC---------
T ss_pred --eeccccccC-------------CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccccccCC---------
Confidence 011112211 3478899986 566776665 4889999999543322211 11110
Q ss_pred ccccccccCceEEeccCCccccccccCCCCccccCC-CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC
Q 011257 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (490)
Q Consensus 167 ~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~-~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 245 (490)
..+..++|+|+|+ ++++++ .++.|.+||+.......... ...........+..++|+|++
T Consensus 129 -----~~~~~~~~s~dg~------------~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 129 -----DGCHSANISPDNR------------TLWVPALKQDRICLFTVSDDGHLVAQD--PAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp -----TTBCCCEECTTSS------------EEEEEEGGGTEEEEEEECTTSCEEEEE--EEEEECSTTCCEEEEEECTTS
T ss_pred -----CCceEEEECCCCC------------EEEEecCCCCEEEEEEecCCCceeeec--ccccccCCCCCcceEEECCCC
Confidence 1234789999998 566555 88999999932211111000 001112233567889999999
Q ss_pred CEEEE-e-cCCcEEEEEcCCCCce---eeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccc
Q 011257 246 ETFIS-A-DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCD 319 (490)
Q Consensus 246 ~~l~~-~-~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~ 319 (490)
+++++ + .++.|.+|++...... .......+.. ......+..++|+|++ +.|+ ++..++.|++||+.......
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCce
Confidence 97755 4 6899999999632211 1111100000 1123467789999999 5555 56679999999998311111
Q ss_pred cccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccC
Q 011257 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~ 371 (490)
+.+..+... ..+..++|+|+|++|++++ ++.|.+|+++.
T Consensus 268 ~~~~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 268 SKEGFQPTE-------------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEEECS-------------SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EEeeeecCC-------------CccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 112222222 2378899999999888864 49999997663
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=3.9e-20 Score=172.19 Aligned_cols=285 Identities=9% Similarity=0.039 Sum_probs=191.2
Q ss_pred ccccccEEEEEECCCCCEEEEecC-------CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccc
Q 011257 32 VQEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (490)
Q Consensus 32 ~~h~~~V~~~~~s~dg~~latg~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~ 104 (490)
......+..++|+|+|+++++++. ++.|.+||..+++.. ..+...
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~----- 88 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHND----- 88 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEES-----
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEecC-----
Confidence 344567899999999998888774 568999998876521 222211
Q ss_pred eeeeeeeccceeEEEEeecCCCcEE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccC
Q 011257 105 YLKSLEIEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (490)
Q Consensus 105 ~~~~~~~~~~V~~v~~~p~~~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 183 (490)
..+..++|+| +++++ ++...++.|.+||..+++.............. ......+..++|+|+|
T Consensus 89 --------~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~dg 152 (353)
T 3vgz_A 89 --------LKPFGATINN--TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE------EVRPLQPRELVADDAT 152 (353)
T ss_dssp --------SCCCSEEEET--TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS------SCCCCEEEEEEEETTT
T ss_pred --------CCcceEEECC--CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc------ccCCCCCceEEECCCC
Confidence 3366789986 55544 45566899999999998876655543211000 0001123468999999
Q ss_pred CccccccccCCCCccccC--CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEE
Q 011257 184 GCGERNFGCASNDSSFPP--GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (490)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~--~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd 260 (490)
+ .++++ +.++.|.+|| .. ..+....+ ..+...+..++|+|+++.++++ .++.|.+||
T Consensus 153 ~------------~l~~~~~~~~~~i~~~d-~~------~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d 212 (353)
T 3vgz_A 153 N------------TVYISGIGKESVIWVVD-GG------NIKLKTAI-QNTGKMSTGLALDSEGKRLYTTNADGELITID 212 (353)
T ss_dssp T------------EEEEEEESSSCEEEEEE-TT------TTEEEEEE-CCCCTTCCCCEEETTTTEEEEECTTSEEEEEE
T ss_pred C------------EEEEEecCCCceEEEEc-CC------CCceEEEe-cCCCCccceEEECCCCCEEEEEcCCCeEEEEE
Confidence 8 44444 3578899999 22 12222222 2244557889999999999998 899999999
Q ss_pred cCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
..+.. ....+.. ...++...+..++|+|++ +.++ +...++.|.+||..+++.. ..+...
T Consensus 213 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~----------- 272 (353)
T 3vgz_A 213 TADNK-ILSRKKL---LDDGKEHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAAP----------- 272 (353)
T ss_dssp TTTTE-EEEEEEC---CCSSSCCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEECS-----------
T ss_pred CCCCe-EEEEEEc---CCCCCCcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEcC-----------
Confidence 98543 3333211 112345678899999999 6554 4445699999999887643 333322
Q ss_pred cccceEEEEECCCCCEEEEE--cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 011257 340 IIASISDIKFARNGRHILSR--DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 417 (490)
....++|+|+|++++.+ .++.|.+||+.+ ++.+..+..... +..++|+|||++|+++.
T Consensus 273 ---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 273 ---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKS-YKVVKTFDTPTH----------------PNSLALSADGKTLYVSV 332 (353)
T ss_dssp ---SCCCEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEEEECCSE----------------EEEEEECTTSCEEEEEE
T ss_pred ---CCceEEECCCCCEEEEEECCCCeEEEEECCC-CeEEEEEecCCC----------------CCeEEEcCCCCEEEEEE
Confidence 12568999999976654 359999999986 777766654432 24899999999887777
Q ss_pred cCC
Q 011257 418 YSN 420 (490)
Q Consensus 418 ~dg 420 (490)
.++
T Consensus 333 ~~~ 335 (353)
T 3vgz_A 333 KQK 335 (353)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=3.9e-21 Score=196.59 Aligned_cols=323 Identities=7% Similarity=-0.026 Sum_probs=195.0
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 40 ~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
+++|+|||++++++ .|+.|++||+.+++.. ..+.+|... ...|.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~~---------~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTMK---------SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHHH---------TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEcccccc---------ccceeeEE
Confidence 78999999766655 5999999999887621 222333200 01388999
Q ss_pred EeecCCCcEEEEEeC---------cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccc
Q 011257 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (490)
Q Consensus 120 ~~p~~~~~~l~~~~~---------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~ 190 (490)
|+| +|++|++++. |+.|++||+.+++........ .....++|||||+
T Consensus 67 ~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----------------~~~~~~~~SPDG~------ 122 (719)
T 1z68_A 67 LSP--DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----------------RPIQYLCWSPVGS------ 122 (719)
T ss_dssp ECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----------------SSBCCEEECSSTT------
T ss_pred ECC--CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----------------cccccceECCCCC------
Confidence 997 7779988876 789999999998751101111 1122789999999
Q ss_pred ccCCCCccccCCCCCcEEEeeeecccccccccce-eeeeccccccc---------eeEEEecCCCCEEEEe-cC-C----
Q 011257 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYH---------INSISNNSDGETFISA-DD-L---- 254 (490)
Q Consensus 191 ~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~---------v~~i~~~~~~~~l~~~-~d-~---- 254 (490)
.|+.+ .++.|++|++..+......... ......++... ..+++|+|||+.|+++ .| +
T Consensus 123 ------~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~ 195 (719)
T 1z68_A 123 ------KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPV 195 (719)
T ss_dssp ------CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCE
T ss_pred ------EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCce
Confidence 56655 4789999993222111000000 00000122211 2589999999999987 33 2
Q ss_pred -----------------------------cEEEEEcCCCCce--eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC
Q 011257 255 -----------------------------RINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (490)
Q Consensus 255 -----------------------------~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 303 (490)
.|++||+.+.... ..+. .+..+.+|...+..++|+||+ +++++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~ 272 (719)
T 1z68_A 196 IAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWLK 272 (719)
T ss_dssp EEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEEE
T ss_pred EEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEec
Confidence 6788888743321 1110 011234678889999999998 77777443
Q ss_pred C----CeEEEEe----CCCccccccccceeccccCCCccccccccccceE-----EEEECCCCCEEEE--E-cC--CeEE
Q 011257 304 K----GSIRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--R-DY--MTLK 365 (490)
Q Consensus 304 d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-----~l~~sp~g~~l~s--g-~d--~~i~ 365 (490)
. ..|.+|| ..+++.. ..+... ..+|...+. .+.|+|||+.|+. + .+ ..|.
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g~~~----~~~~~~--------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTWDCP----KTQEHI--------EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSEECC----GGGEEE--------EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred cccCeEEEEEEcccCCCCCCceE----EEEecc--------cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 2 3488899 7776532 222100 001123444 7899999996654 3 23 4677
Q ss_pred EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC-----CeEEEEecCC--CceeeeEec
Q 011257 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSE--GSAESTTLE 438 (490)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~vw~~~~--~~~~~~~~~ 438 (490)
+||+.. ++ ...+..+... +..+.++ +++.|+..+.+ +.+++|.+.. +......+.
T Consensus 341 ~~~~~~-~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 341 YIKDTV-EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp EESSCS-TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred EEECCC-Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc
Confidence 777764 33 3444332221 3366666 88877766654 7889998764 321112332
Q ss_pred ----cCCCceEEEEEccCCCCCCCC
Q 011257 439 ----ASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 439 ----~~~~~v~~~~~sp~~~~~~~~ 459 (490)
+|...+..+.|+||++.....
T Consensus 403 ~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 403 CHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp TTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred CccCCCCCceEEEEECCCCCEEEEE
Confidence 256678899999999876644
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=3.5e-21 Score=191.84 Aligned_cols=270 Identities=12% Similarity=0.063 Sum_probs=179.5
Q ss_pred ccccEEEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~~----------- 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREPI----------- 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSCC-----------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeecccc-----------
Confidence 3568999999999999999886 99999999865541 22333320
Q ss_pred cceeEEEEeecCCCcEEEEEeC---cCeEEEEEccC---CeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~---dg~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..+..++|+| + ..+++++. +...++|.+.. +....+.... .....+|+|+|+.
T Consensus 65 ~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-----------------~~~~~~~s~dg~~- 123 (582)
T 3o4h_A 65 NSVLDPHYGV--G-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-----------------PMRILSGVDTGEA- 123 (582)
T ss_dssp SEECEECTTC--S-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-----------------SBEEEEEEECSSC-
T ss_pred cccccccCCC--C-eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-----------------CceeeeeCCCCCe-
Confidence 4688999997 3 56776665 45566665533 2222211111 0114589999974
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC----CcEEEEEc
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNL 261 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----~~i~~wd~ 261 (490)
.+++.+.++.+.+||+ ... +..+.. . +.. .+++|+|||++++++ .+ ..|++||+
T Consensus 124 ----------~~~~s~~~~~~~l~d~-~~g------~~~~l~-~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 124 ----------VVFTGATEDRVALYAL-DGG------GLRELA-R-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp ----------EEEEEECSSCEEEEEE-ETT------EEEEEE-E-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred ----------EEEEecCCCCceEEEc-cCC------cEEEee-c-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 3344444555559983 221 111111 2 222 789999999999976 44 67999998
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
.++... .+..|...+..++|+||| +.|+++..++ .|++||+.+++. ..+..+.
T Consensus 183 ~~g~~~---------~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~---------- 237 (582)
T 3o4h_A 183 SSGGLR---------VFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV-----EDLELPS---------- 237 (582)
T ss_dssp TTCCCE---------EECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE-----EECCCSC----------
T ss_pred CCCCce---------EeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE-----EEccCCC----------
Confidence 854432 245678889999999999 8888888888 899999988753 1222222
Q ss_pred cccceEEEE--------ECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 340 IIASISDIK--------FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 340 h~~~i~~l~--------~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
..+..++ |+|||.+++++ .++++++|++ ++..... ... |.+++|+ ++
T Consensus 238 --~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~---g~~~~~~---~~~---------------v~~~~~s-dg 293 (582)
T 3o4h_A 238 --KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID---GERVEAP---QGN---------------HGRVVLW-RG 293 (582)
T ss_dssp --SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET---TEEECCC---SSE---------------EEEEEEE-TT
T ss_pred --cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE---CCeeccC---CCc---------------eEEEEec-CC
Confidence 3344444 99999877776 4699999998 3332211 111 4588999 99
Q ss_pred CEEEEeecCC---eEEEEecCC
Q 011257 411 GRVATGSYSN---LFRVFGCSE 429 (490)
Q Consensus 411 ~~l~s~~~dg---~i~vw~~~~ 429 (490)
+++++++.+. .+++|+..+
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 9999888774 477777653
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=4.4e-19 Score=165.67 Aligned_cols=280 Identities=8% Similarity=0.035 Sum_probs=167.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCc----CeEEEEEccC--CeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 113 EKINKIRWCQSANSALYLLSTND----KTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~d----g~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..+..++|+| ++++|++++.+ +.|.+|++.. ++...+....... ..+..+++ +|+
T Consensus 50 ~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~-------------~~p~~~~~--dg~-- 110 (361)
T 3scy_A 50 ANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG-------------ADPCYLTT--NGK-- 110 (361)
T ss_dssp SCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS-------------SCEEEEEE--CSS--
T ss_pred CCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC-------------CCcEEEEE--CCC--
Confidence 5577799986 67788888875 7999999876 5555444332110 11123444 666
Q ss_pred ccccccCCCCccc-cCCCCCcEEEeeeecccccccccceeeee------ccccccceeEEEecCCCCEEEEe--cCCcEE
Q 011257 187 ERNFGCASNDSSF-PPGGVSSLRLPVVVTSQETNLVAGCRRIY------AHAHDYHINSISNNSDGETFISA--DDLRIN 257 (490)
Q Consensus 187 ~~~~~~~~~~~l~-~~~~~g~v~iw~~~~~~~~~~~~~~~~~~------~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (490)
+++ +...++.+.+|++................ ...+...+.+++|+|+|++++++ .++.|.
T Consensus 111 ----------~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 111 ----------NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp ----------EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ----------EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 444 44578899999942221111111000000 01122345789999999977665 589999
Q ss_pred EEEcCCCCc----e-eeee-ecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccccceeccccC
Q 011257 258 LWNLEISNQ----S-FNIV-DVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 258 ~wd~~~~~~----~-~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
+|++..... . +... ... .....+...+..++|+|++ +++++++ .++.|.+||+.+++.. .+..+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~--~~~~~~~~-- 254 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLD--EIQTVAAD-- 254 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEE--EEEEEESC--
T ss_pred EEEEcCCCCcccccceeeccccc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceE--EeEEEecC--
Confidence 999875442 1 1100 000 0012234557899999999 7666655 6899999999866421 01111111
Q ss_pred CCccccccccccceEEEEECCCCCEEEEE--c-CCeEEEEeccCC-CC--ceeeeeeeccccccccccccCCCccceeeE
Q 011257 331 PGTRSFFTEIIASISDIKFARNGRHILSR--D-YMTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~-d~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
..+......++|+|||++|+++ . ++.|.+|+++.. ++ .+..+.. ... +..+
T Consensus 255 -------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~ 311 (361)
T 3scy_A 255 -------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNF 311 (361)
T ss_dssp -------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEE
T ss_pred -------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceE
Confidence 1111346799999999998764 3 489999999631 33 2222222 111 2489
Q ss_pred EEcCCCCEEEEee-cCCeEEEEec--CCCceeeeEeccCCCceEEEEEc
Q 011257 405 CLSGDGGRVATGS-YSNLFRVFGC--SEGSAESTTLEASKNPMRRQVQT 450 (490)
Q Consensus 405 ~~s~d~~~l~s~~-~dg~i~vw~~--~~~~~~~~~~~~~~~~v~~~~~s 450 (490)
+|+|||++|++++ .++.|.+|++ .+|+.....-..+...+.+++|.
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9999999988887 6789999655 46654211112344678888886
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=8.2e-20 Score=168.44 Aligned_cols=264 Identities=6% Similarity=0.032 Sum_probs=173.0
Q ss_pred CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 126 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
+..+++.+.++.|++||+.+++......... ..+ .++|+|+|+. .+++...++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~-~~~~s~dg~~-----------l~~~~~~~~ 62 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGY---------------DFV-DTAITSDCSN-----------VVVTSDFCQ 62 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCC---------------CEE-EEEECSSSCE-----------EEEEESTTC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccC---------------Ccc-eEEEcCCCCE-----------EEEEeCCCC
Confidence 4457788889999999999998766554331 223 7899999983 334445588
Q ss_pred cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC-C--cEEEEEcCCCCceeeeeecCCCccCCC
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-L--RINLWNLEISNQSFNIVDVKPANMEDL 281 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~ 281 (490)
.|.+||. ..... ..... ..+.....+++|+|++++++++ .+ + .|.+||+.+. .....+ . .
T Consensus 63 ~i~~~d~-~~~~~-----~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~-------~-~ 126 (331)
T 3u4y_A 63 TLVQIET-QLEPP-----KVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-KFISTI-------P-I 126 (331)
T ss_dssp EEEEEEC-SSSSC-----EEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-EEEEEE-------E-C
T ss_pred eEEEEEC-CCCce-----eEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-CeEEEE-------E-C
Confidence 9999992 22111 01122 3333444449999999999966 44 3 8999999844 333322 1 2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCccccccc-cceeccccCCCccccccccccceEEEEECCCCCEEEEE
Q 011257 282 TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (490)
Q Consensus 282 ~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg 359 (490)
...+.+++|+|++..++++...++. |.+|++......... ...+. .......++|+|+|++++.+
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS-------------GGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC-------------SSSSEEEEEECTTSSEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc-------------CCCCccceEECCCCCEEEEE
Confidence 3446899999999335566666688 999999864322100 01111 11457899999999977654
Q ss_pred -c-CCeEEEEeccCCCCc---eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCcee
Q 011257 360 -D-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAE 433 (490)
Q Consensus 360 -~-d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~ 433 (490)
. ++.|.+||+.+ ++. +..+..+.. +..++|+|||++|++++ .++.|.+||+.+++..
T Consensus 194 ~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 194 NLIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp ETTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred eCCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 3 59999999986 776 555554322 23899999999776554 5788999999988651
Q ss_pred -eeEeccC----CCc---eEEEEEccCCCCCCCCccC
Q 011257 434 -STTLEAS----KNP---MRRQVQTPSRPSRPLGSLS 462 (490)
Q Consensus 434 -~~~~~~~----~~~---v~~~~~sp~~~~~~~~~~~ 462 (490)
+..+..+ ..+ ...++|+||+.....++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 1112211 222 2458999999977655443
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=1.1e-19 Score=168.94 Aligned_cols=299 Identities=8% Similarity=0.019 Sum_probs=179.9
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 40 ~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
.+++++++.++++++.++.|.+||..+++. ...+..+. ...+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~-----------~~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPD-----------KFGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSS-----------CCSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCC-----------CCCCceeE
Confidence 457888999999999999999999987652 12222211 01467889
Q ss_pred EeecCCCcEE-EEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCcc
Q 011257 120 WCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (490)
Q Consensus 120 ~~p~~~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l 198 (490)
|+| +++++ ++...++.|.+||+.+++............ .....+..++|+|+|+ ++
T Consensus 50 ~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~------------~l 106 (349)
T 1jmx_B 50 MAP--DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG---------EVGRSMYSFAISPDGK------------EV 106 (349)
T ss_dssp ECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT---------EEEECSSCEEECTTSS------------EE
T ss_pred ECC--CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc---------cccccccceEECCCCC------------EE
Confidence 986 55555 455678999999999987665544321000 0011234789999999 66
Q ss_pred ccCCCC------------CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCc
Q 011257 199 FPPGGV------------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (490)
Q Consensus 199 ~~~~~~------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~ 266 (490)
++++.+ +.|.+||+ .... .......+ .+...+.+++|+|+++ ++++ ++.|.+||+.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~---~~~~~~~~--~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~- 177 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFST-ADGL---EAKPVRTF--PMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGK- 177 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEEG-GGGG---GBCCSEEE--ECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCC-
T ss_pred EEEcccccccccccccCCCeEEEEEC-CCcc---ccceeeec--cCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCc-
Confidence 666644 89999993 2211 11111221 2234678899999999 4444 2239999998544
Q ss_pred eeeeeecCCCccC-------------CCC----CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc
Q 011257 267 SFNIVDVKPANME-------------DLT----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (490)
Q Consensus 267 ~~~~~~~~~~~~~-------------~~~----~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 329 (490)
....+........ ... .....+++++++............+..+|..+++.. .+....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 252 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-----TQEFAD 252 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-----EEEEEE
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE-----eccccc
Confidence 3333211100000 000 033456666654111110001111223555554321 111100
Q ss_pred CCCccccccccccceEEEEECC-CCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 330 APGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 330 ~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+..... +..++|+|
T Consensus 253 ----------~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~ 304 (349)
T 1jmx_B 253 ----------LTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHT----------------YYCVAFDK 304 (349)
T ss_dssp ----------CSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECS
T ss_pred ----------CCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCC----------------ccceEECC
Confidence 114678999999 99999988 88999999986 766666653322 23899999
Q ss_pred CCCEEEEeecCCeEEEEecCCCceeeeEec
Q 011257 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 438 (490)
|+++|++++.++.|++||+++++. +..+.
T Consensus 305 dg~~l~~~~~~~~v~v~d~~~~~~-~~~~~ 333 (349)
T 1jmx_B 305 KGDKLYLGGTFNDLAVFNPDTLEK-VKNIK 333 (349)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEE-EEEEE
T ss_pred CCCEEEEecCCCeEEEEeccccce-eeeee
Confidence 999888888899999999998876 44443
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=9.4e-21 Score=193.99 Aligned_cols=292 Identities=11% Similarity=0.071 Sum_probs=181.9
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.+.+++|+| +|+++++ +.||+|++||+.+++.......+... . .....++|||||+
T Consensus 18 ~~~~~~~sp--dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~-----~-------~~v~~~~~SpDg~--------- 73 (723)
T 1xfd_A 18 HDPEAKWIS--DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-----S-------LRAIRYEISPDRE--------- 73 (723)
T ss_dssp CCCCCCBSS--SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-----T-------TTCSEEEECTTSS---------
T ss_pred cccccEEcC--CCcEEEE-eCCCCEEEEECCCCcEEEEecccccc-----c-------cccceEEECCCCC---------
Confidence 367789997 5666655 78999999999998776655432110 0 0123789999999
Q ss_pred CCCccccCCC---------CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCC
Q 011257 194 SNDSSFPPGG---------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS 264 (490)
Q Consensus 194 ~~~~l~~~~~---------~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~ 264 (490)
+|++++. ++.+.+||+ ...+. ..+.. ..+|...+..++|+|||+.|+.+.++.|++||+.+.
T Consensus 74 ---~l~~~~~~~~~~~~~~~~~i~~~d~-~~~~~----~~l~~-~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g 144 (723)
T 1xfd_A 74 ---YALFSYNVEPIYQHSYTGYYVLSKI-PHGDP----QSLDP-PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK 144 (723)
T ss_dssp ---EEEEEESCCCCSSSCCCSEEEEEES-SSCCC----EECCC-TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS
T ss_pred ---EEEEEecCccceeecceeeEEEEEC-CCCce----EeccC-CccccccccccEECCCCCEEEEEECCeEEEEECCCC
Confidence 5665544 378889993 22111 11111 134555688999999999999996689999999854
Q ss_pred CceeeeeecCCCc--cCCC---------CCceEEEEEcCCCCcEEEEEeCCC----------------------------
Q 011257 265 NQSFNIVDVKPAN--MEDL---------TEVITSAEFHPTHCNMLAYSSSKG---------------------------- 305 (490)
Q Consensus 265 ~~~~~~~~~~~~~--~~~~---------~~~v~~~~~~p~~~~~l~~~~~dg---------------------------- 305 (490)
. ...+....... +.++ ...+.+++|+||| +.|++++.|+
T Consensus 145 ~-~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 222 (723)
T 1xfd_A 145 Q-AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (723)
T ss_dssp C-CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred c-eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence 3 33322110000 0000 1134789999999 8888887553
Q ss_pred ------eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc----C-CeEEEEeccCCCC
Q 011257 306 ------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSG 374 (490)
Q Consensus 306 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~----d-~~i~iwd~~~~~~ 374 (490)
.|++||+.+++.. ..+..+. .+..+...+..++|||||++|++.. + ..|++||+.+ ++
T Consensus 223 ~~~~~~~l~~~d~~~~~~~----~~l~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~ 291 (723)
T 1xfd_A 223 SENPSISLHVIGLNGPTHD----LEMMPPD------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GV 291 (723)
T ss_dssp SCCCEEEEEEEESSSSCCC----EECCCCC------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CC
T ss_pred CCCCeeEEEEEECCCCcee----EEeeCCc------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-Cc
Confidence 7888998876521 2232211 0112336789999999999987642 2 6899999986 66
Q ss_pred ceeeeeeec-cccccccccccCCCccceeeEEEcCCCCEEEEe--ecCC------eEEEEe-cCCCce-eeeEeccCCCc
Q 011257 375 PVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSN------LFRVFG-CSEGSA-ESTTLEASKNP 443 (490)
Q Consensus 375 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~--~~dg------~i~vw~-~~~~~~-~~~~~~~~~~~ 443 (490)
....+..+. ..... . ...++|+|||+.|+.. ..++ .|++|| ..+++. ....+..+...
T Consensus 292 ~~~~~~~~~~~~~~~---------~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 360 (723)
T 1xfd_A 292 CTKKHEDESEAWLHR---------Q--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (723)
T ss_dssp EEEEEEEECSSCCCC---------C--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred ceEEEEeccCCEEec---------c--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE
Confidence 665554432 11100 0 0168999999977754 4566 577777 444440 02344433344
Q ss_pred eEE-EEEccCCCCCCCCccC
Q 011257 444 MRR-QVQTPSRPSRPLGSLS 462 (490)
Q Consensus 444 v~~-~~~sp~~~~~~~~~~~ 462 (490)
+.. ++|+||++.....+..
T Consensus 361 ~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 361 VTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred EEeeeEEcCCCCEEEEEEcC
Confidence 554 6999999987655443
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=2.4e-18 Score=159.79 Aligned_cols=209 Identities=10% Similarity=0.093 Sum_probs=129.7
Q ss_pred cceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCc----cCCCCCceEEEEEcCCCCcEEEEEeCCCeE
Q 011257 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 307 (490)
..+..++|+|++++|+++ .++.|.+|++...+....+....... ...+...+.+++|+|++ +++++...++.|
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v 164 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKV 164 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEE
Confidence 456678899999977776 57889999986433322211110000 01123458899999999 677777789999
Q ss_pred EEEeCC-CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-CCeEEEEeccCCCCceeeeeeecc
Q 011257 308 RLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 308 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
++||+. +++... ...+.... ......++|+|||++|++. . ++.|.+|+++.....+........
T Consensus 165 ~~~~~~~~g~~~~--~~~~~~~~-----------g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 165 YVYNVSDAGQLSE--QSVLTMEA-----------GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp EEEEECTTSCEEE--EEEEECCT-----------TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEECCCCcEEE--eeeEEcCC-----------CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 999998 443210 11111111 1356789999999977764 3 499999999842222222211110
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEE-EeecCCeEEEEecCC-Cc-eeeeEeccCCCceEEEEEccCCCCCCCCcc
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSE-GS-AESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~vw~~~~-~~-~~~~~~~~~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
.... ......+..++|+|||++|+ +...++.|.+|++.. ++ ..+..+..+...+..++|+||++....++.
T Consensus 232 ~~~~------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 232 IPAD------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp SCTT------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred cCCC------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 0000 00001144799999999874 555689999999973 22 224455666667899999999987666544
Q ss_pred C
Q 011257 462 S 462 (490)
Q Consensus 462 ~ 462 (490)
.
T Consensus 306 ~ 306 (347)
T 3hfq_A 306 N 306 (347)
T ss_dssp T
T ss_pred C
Confidence 3
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2e-18 Score=164.41 Aligned_cols=231 Identities=10% Similarity=0.126 Sum_probs=144.7
Q ss_pred cccccccEEEEEECCCCCEEE----EecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCccccee
Q 011257 31 EVQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~la----tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~ 106 (490)
.+.|...|++++|+|+|++|| +|+.|+.|+|||+.+........ .+ .......+.+|.
T Consensus 88 ~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~---~~---------~~~~~~~~~~h~------ 149 (434)
T 2oit_A 88 LVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ---KR---------PFAYHKLLKDAG------ 149 (434)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS---CC---------CSEEEECCCSGG------
T ss_pred cccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCC---cc---------eeeeeeccCCCC------
Confidence 345677899999999999999 89999999999997641000000 00 001124456677
Q ss_pred eeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 107 ~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..|++++|+|. ++.+|++++.||+|++||++++.....
T Consensus 150 ------~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~----------------------------------- 187 (434)
T 2oit_A 150 ------GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA----------------------------------- 187 (434)
T ss_dssp ------GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE-----------------------------------
T ss_pred ------CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee-----------------------------------
Confidence 88999999984 257999999999999999987632110
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
..+|...|.+++|+|+|++|++| .|+.|++||.+ ..
T Consensus 188 ------------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 188 ------------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp ------------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred ------------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence 13456789999999999999999 89999999998 33
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEE-EeCCC------eEEEEeCCCccccccccceeccccCCCcccccc
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (490)
.. ..+.........|...|.+++|++++ .++++ ...+| .+++|+++..+... ...+......... +.
T Consensus 225 ~~-~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~~~--~~ 298 (434)
T 2oit_A 225 EK-KVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPCYG--SC 298 (434)
T ss_dssp EE-EEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSSCC--CC
T ss_pred cc-ccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCCCC--CC
Confidence 22 22211111111345589999999987 55543 33443 38999998653110 0111111111000 00
Q ss_pred ccccceEEEEECCCCCEEEEEc-C-CeEEEEecc
Q 011257 339 EIIASISDIKFARNGRHILSRD-Y-MTLKLWDIN 370 (490)
Q Consensus 339 ~h~~~i~~l~~sp~g~~l~sg~-d-~~i~iwd~~ 370 (490)
+...+...+.+-++.+++++++ . ..|.|....
T Consensus 299 ~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 299 TERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1112222344446777777653 2 667777654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.1e-19 Score=171.13 Aligned_cols=255 Identities=9% Similarity=0.020 Sum_probs=161.5
Q ss_pred ccccccccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecC
Q 011257 8 SEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH 87 (490)
Q Consensus 8 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 87 (490)
.|...+.+.|+..+-+.-...... .....++.+++++++.++++|+.++ +++|+........... ...
T Consensus 10 ~e~~~~~~~F~~~~~vri~~~~~~-~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~------- 77 (434)
T 2oit_A 10 PEREMKDFQFRALKKVRIFDSPEE-LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDP------- 77 (434)
T ss_dssp CEEEESSEEEEECCEEECSCCCSS-CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCT-------
T ss_pred cccccccceeeeeeeEEecCCccc-cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCc-------
Confidence 344456666665432111101111 2345689999999999999999887 9999875432100000 000
Q ss_pred CccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEE----EEeCcCeEEEEEccCCeEEEEeeeccCCCcCCC
Q 011257 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG 163 (490)
Q Consensus 88 p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~----~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~ 163 (490)
.... .+.....+.+...|++++|+| ++.+|+ +++.|++|++||+.++... ..
T Consensus 78 ------~~~~----~~~~~~~~~~~~~v~~l~~sp--dg~~lav~~~sgs~d~~v~iwd~~~~~~~-----~~------- 133 (434)
T 2oit_A 78 ------NKIV----DKVQGLLVPMKFPIHHLALSC--DNLTLSACMMSSEYGSIIAFFDVRTFSNE-----AK------- 133 (434)
T ss_dssp ------TCEE----ECCCCEEECCSSCEEEEEECT--TSCEEEEEEEETTTEEEEEEEEHHHHHCT-----TC-------
T ss_pred ------cccc----ccCccccccCCCcccEEEEcC--CCCEEEEEEeccCCCceEEEEEccccccC-----Cc-------
Confidence 0000 000111223337799999997 567888 7888999999998754100 00
Q ss_pred CCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC
Q 011257 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (490)
Q Consensus 164 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 243 (490)
+ .......... ..+|...|.+++|+|
T Consensus 134 --------------------~---------------------------------~~~~~~~~~~-~~~h~~~V~~v~~~p 159 (434)
T 2oit_A 134 --------------------Q---------------------------------QKRPFAYHKL-LKDAGGMVIDMKWNP 159 (434)
T ss_dssp --------------------S---------------------------------SCCCSEEEEC-CCSGGGSEEEEEECS
T ss_pred --------------------C---------------------------------Ccceeeeeec-cCCCCCceEEEEECC
Confidence 0 0000000111 267889999999999
Q ss_pred C-CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccc
Q 011257 244 D-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (490)
Q Consensus 244 ~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 321 (490)
+ +.+|+++ .|+.|++||+++..... ...+|...|.+++|+|+| ++|++|+.||+|++||++ ++.
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~~~~~--------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~---- 225 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTETVKVC--------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE---- 225 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSSEEEE--------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----
T ss_pred CCCCEEEEEECCCeEEEEEcCCCccee--------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----
Confidence 8 8899998 89999999998553222 234578899999999999 999999999999999998 332
Q ss_pred cceeccccCCCccccccccccceEEEEECCCCCEEEEE--cCC------eEEEEeccC
Q 011257 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYM------TLKLWDINM 371 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~d~------~i~iwd~~~ 371 (490)
...+..+.. ....|...+.+++|++++.++++. .+| .+++|++.+
T Consensus 226 ~~~~~~~~~-----~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 226 KKVIPCPPF-----YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEECCCTT-----CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred cccccCCcc-----cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 123332211 011234589999999999888753 232 499999985
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=6e-20 Score=182.94 Aligned_cols=266 Identities=13% Similarity=0.026 Sum_probs=173.1
Q ss_pred cceeEEEEeecCCCcEEEEEeC-cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.+|.+++|+| ||+.|++++. ||+++||++.+++..++...+. .....++|+|| +
T Consensus 22 ~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~---------------~~~~~~~~spd-~------- 76 (582)
T 3o4h_A 22 VEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPI---------------NSVLDPHYGVG-R------- 76 (582)
T ss_dssp SCEEEEEEEE--TTTEEEEEEEETTEEEEEEEETTEEEECCSSCC---------------SEECEECTTCS-E-------
T ss_pred cchheeecCC--CCCeEEEEEccCCceeEEEEcCCCcEeeecccc---------------cccccccCCCC-e-------
Confidence 5699999998 6779998776 9999999998887665443221 01125678888 5
Q ss_pred cCCCCccccCCC---CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE--EEEecCCcEEEEEcCCCCc
Q 011257 192 CASNDSSFPPGG---VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISADDLRINLWNLEISNQ 266 (490)
Q Consensus 192 ~~~~~~l~~~~~---~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--l~~~~d~~i~~wd~~~~~~ 266 (490)
.++++.. +...++|.+........ . .+... ..+...+|+|+++. ++++.++.+.+||+.++ .
T Consensus 77 -----~l~~~~~~~g~~~~~l~~~~~~~~g~~----~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~ 143 (582)
T 3o4h_A 77 -----VILVRDVSKGAEQHALFKVNTSRPGEE----Q-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGG-G 143 (582)
T ss_dssp -----EEEEEECSTTSCCEEEEEEETTSTTCC----E-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-E
T ss_pred -----EEEEeccCCCCcceEEEEEeccCCCcc----c-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCC-c
Confidence 5554443 45567766222001111 1 11111 22335677887753 44445555669999844 3
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
...+. .+.. .+++|+||| +.+++++.+ +.|++||+.+++. ..+..+. .
T Consensus 144 ~~~l~--------~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~------------~ 195 (582)
T 3o4h_A 144 LRELA--------RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGL-----RVFDSGE------------G 195 (582)
T ss_dssp EEEEE--------EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCC-----EEECCSS------------C
T ss_pred EEEee--------cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCc-----eEeecCC------------C
Confidence 33321 1222 789999999 899988877 7899999988763 3444433 6
Q ss_pred ceEEEEECCCCCEEEEEc-CC--eEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC
Q 011257 343 SISDIKFARNGRHILSRD-YM--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 419 (490)
.+..++|||||++|++++ ++ .|++||+.+ ++.. .+..+........ ..+....+|+|||.++++++.|
T Consensus 196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp EEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEEET
T ss_pred ccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEEcC
Confidence 789999999999999764 46 899999986 6655 5555543321000 0001123399999999999999
Q ss_pred CeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 420 g~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
|.+++|++ |+. .. .+...+.+++|+ ++......+
T Consensus 267 g~~~l~~~--g~~-~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 267 GRSAVFID--GER-VE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp TEEEEEET--TEE-EC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred CcEEEEEE--CCe-ec---cCCCceEEEEec-CCEEEEEEc
Confidence 99999999 654 22 334678999999 887654433
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.6e-17 Score=155.22 Aligned_cols=259 Identities=8% Similarity=-0.015 Sum_probs=161.7
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEcc-CCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+..++|+| ++++|++++.+ .|.+|++. +++.......... + .+..++|+|+|+.+
T Consensus 41 ~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-------g-------~~~~~~~spdg~~l------ 97 (365)
T 1jof_A 41 PISWMTFDH--ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-------G-------HPRANDADTNTRAI------ 97 (365)
T ss_dssp CCSEEEECT--TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-------S-------SGGGGCTTSCCEEE------
T ss_pred CCcEEEECC--CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-------C-------CCccEEECCCCCEE------
Confidence 477899986 67788888887 99999997 7766544332210 1 12257889999821
Q ss_pred CCCCccccCC-------------CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEE
Q 011257 193 ASNDSSFPPG-------------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRIN 257 (490)
Q Consensus 193 ~~~~~l~~~~-------------~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~ 257 (490)
+++++. .++.+.+|++...... ......+...+...+.+++|+|+|++|+++ .++.|+
T Consensus 98 ----~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~ 170 (365)
T 1jof_A 98 ----FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL---EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW 170 (365)
T ss_dssp ----EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ----EEEEecCCcceeccceeecCCceEEEEccCCCCcC---cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEE
Confidence 123343 6889999993211111 111111111244678899999999988876 478999
Q ss_pred EEEcC-CCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CCeEEEEeCC--Cccccc--cccceeccccCC
Q 011257 258 LWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQEAP 331 (490)
Q Consensus 258 ~wd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~--~~~~~~--~~~~~~~~~~~~ 331 (490)
+|++. ++. ....... ....|...+..++|+|+| +++++++. ++.|.+|++. +++... ..+..+...
T Consensus 171 ~~~~~~~g~-~~~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~--- 242 (365)
T 1jof_A 171 THRKLASGE-VELVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG--- 242 (365)
T ss_dssp EEEECTTSC-EEEEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT---
T ss_pred EEEECCCCC-EEEeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC---
Confidence 99997 333 2111100 112235668999999999 77776664 7899999875 343210 001111110
Q ss_pred Ccccccccccc------ceEEEE-ECCCCCEEEEEc--CC-----eEEEEeccCCCCceee---eeeecccccccccccc
Q 011257 332 GTRSFFTEIIA------SISDIK-FARNGRHILSRD--YM-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDLYE 394 (490)
Q Consensus 332 ~~~~~~~~h~~------~i~~l~-~sp~g~~l~sg~--d~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~ 394 (490)
+.+|.. .+..++ |+|||++|++++ .+ .|.+|++...++.... ...+...
T Consensus 243 -----~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--------- 308 (365)
T 1jof_A 243 -----IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--------- 308 (365)
T ss_dssp -----CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---------
T ss_pred -----cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---------
Confidence 111222 578999 999999988753 23 8999999632443321 2112111
Q ss_pred CCCccceeeEEEcC---CCCEEEEeec-CCeEEEEecCCC
Q 011257 395 NDSIFDKFECCLSG---DGGRVATGSY-SNLFRVFGCSEG 430 (490)
Q Consensus 395 ~~~~~~v~~~~~s~---d~~~l~s~~~-dg~i~vw~~~~~ 430 (490)
...++|+| ||++|++++. ++.|.+|+++..
T Consensus 309 ------~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 ------GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ------TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ------cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 12789999 8999998886 489999999865
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=4.4e-18 Score=158.88 Aligned_cols=288 Identities=10% Similarity=0.049 Sum_probs=169.0
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEEecCC----CcEEEEEecCCCCCCCcccccccccceeecCC
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP 88 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p 88 (490)
....|+++..-++....... +...+..++|+|||++|++++.+ +.|.+|++.....
T Consensus 28 ~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g------------------- 87 (361)
T 3scy_A 28 GIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG------------------- 87 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------
T ss_pred CEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------
Confidence 45567665422333333333 67788899999999999998875 7999999875310
Q ss_pred ccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEe-CcCeEEEEEccCCe-EEEE---eeeccCCCcCCC
Q 011257 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKK-VKKV---FDWNVHPEKAAG 163 (490)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~-~dg~i~lwd~~~~~-~~~~---~~~~~~~~~~~~ 163 (490)
..+.+.....+. .....+++ ++.+++++. .++.|.+|++.... .... ........
T Consensus 88 ~~~~~~~~~~~~------------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~---- 147 (361)
T 3scy_A 88 TLHLLNTQKTMG------------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP---- 147 (361)
T ss_dssp EEEEEEEEECSS------------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS----
T ss_pred cEEEeeEeccCC------------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC----
Confidence 001122222222 33555666 456666665 68899999997532 1111 11111000
Q ss_pred CCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeeccccc---c-cccc-eeeeeccccccceeE
Q 011257 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQET---N-LVAG-CRRIYAHAHDYHINS 238 (490)
Q Consensus 164 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~---~-~~~~-~~~~~~~~~~~~v~~ 238 (490)
.........+..++|+|+|+. ++++...++.+.+|++...... . .... ........+...+..
T Consensus 148 -~~~~~~~~~~~~~~~spdg~~-----------l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (361)
T 3scy_A 148 -DKERQTMPHLHCVRITPDGKY-----------LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRH 215 (361)
T ss_dssp -CTTTCSSCCEEEEEECTTSSE-----------EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEE
T ss_pred -CccccCCCcceEEEECCCCCE-----------EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeE
Confidence 000001112236899999993 3345556889999983222110 0 0000 001111233456789
Q ss_pred EEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC--CCeEEEEeCC-
Q 011257 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMR- 313 (490)
Q Consensus 239 i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iwd~~- 313 (490)
++|+|+|++++++ .++.|.+|++.. +........ .....+...+..++|+|+| ++|+++.. ++.|.+|++.
T Consensus 216 ~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~--~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 216 LIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTV--AADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp EEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEE--ESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECT
T ss_pred EEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEE--ecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcC
Confidence 9999999987765 589999999983 322111111 1223344567899999999 77766555 5899999996
Q ss_pred -CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccC
Q 011257 314 -QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINM 371 (490)
Q Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~ 371 (490)
+++.. .+..+.. . ..+..++|+|||++|++++ ++.|.+|+++.
T Consensus 292 ~~g~~~--~~~~~~~-g------------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 292 TNGTLT--KVGYQLT-G------------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TTCCEE--EEEEEEC-S------------SCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCcEE--EeeEecC-C------------CCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 33311 1122221 1 3578899999999988864 49999977653
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=6.9e-19 Score=162.53 Aligned_cols=255 Identities=12% Similarity=0.037 Sum_probs=170.3
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCc
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~ 206 (490)
.++++++.++.|++||+.+++........... ..+..++|+|+|+. ++++...++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-----------l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG-------------PTPMVPMVAPGGRI-----------AYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT-------------TCCCCEEECTTSSE-----------EEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC-------------CCccceEEcCCCCE-----------EEEEeCCCCe
Confidence 47899999999999999998876655433200 01337899999983 3456677899
Q ss_pred EEEeeeecccccccccceeeeeccc----cccceeEEEecCCCCEEEEe-------------cCCcEEEEEcCCCCceee
Q 011257 207 LRLPVVVTSQETNLVAGCRRIYAHA----HDYHINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 207 v~iw~~~~~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~-------------~d~~i~~wd~~~~~~~~~ 269 (490)
|.+||+ .. .+....+..+ |...+..++|+|+++.++++ .++.|.+||+.+. +...
T Consensus 58 v~~~d~-~~------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~ 129 (337)
T 1pby_B 58 LVKIDL-VT------GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRK 129 (337)
T ss_dssp EEEEET-TT------CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEE
T ss_pred EEEEEC-CC------CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-cEEE
Confidence 999992 21 1122222111 22367789999999988887 3699999999744 3333
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
.+ . ....+.+++|+|++ +.|+++ ++.|++||+.+++.. ..+...... . .+.|
T Consensus 130 ~~-------~-~~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~----~~~~~~~~~----------~---~~~~ 181 (337)
T 1pby_B 130 AF-------E-APRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLV----EDKPIQSWE----------A---ETYA 181 (337)
T ss_dssp EE-------E-CCSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEE----EEECSTTTT----------T---TTBC
T ss_pred EE-------e-CCCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEe----eeeeccccC----------C---Ccee
Confidence 22 1 13446788999999 777766 689999999987642 233222100 1 2267
Q ss_pred CCCCCEEEEEc-C-C-----------------------eEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeE
Q 011257 350 ARNGRHILSRD-Y-M-----------------------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 350 sp~g~~l~sg~-d-~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
+|+|++++... . + .|.+||+.+ ++.. .+....... .+..+
T Consensus 182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~-~~~~~~~~~-------------~~~~~ 246 (337)
T 1pby_B 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-GEMA-MREVRIMDV-------------FYFST 246 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-CCEE-EEEEEECSS-------------CEEEE
T ss_pred CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC-CCce-EeecCCCCC-------------ceeeE
Confidence 88888766532 2 3 478999986 5543 332221110 13479
Q ss_pred EEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCCc
Q 011257 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 405 ~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
+|+||+++|+++ ++.|++||+.+++. +..+..+ ..+.+++|+||++....+.
T Consensus 247 ~~s~dg~~l~~~--~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 247 AVNPAKTRAFGA--YNVLESFDLEKNAS-IKRVPLP-HSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTTEE-EEEEECS-SCCCEEEECTTSCEEEEES
T ss_pred EECCCCCEEEEe--CCeEEEEECCCCcC-cceecCC-CceeeEEECCCCCEEEEEc
Confidence 999999999888 79999999998876 4555443 4678999999998665543
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=2e-18 Score=176.67 Aligned_cols=326 Identities=9% Similarity=0.032 Sum_probs=186.3
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
....+++|+|||++++++ |+.|++||+.+++.. ..+.+|.... .....
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~ 64 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFDE-------FGHSI 64 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTTT-------CCSCC
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhhh-------hcccc
Confidence 346689999999999987 899999999887631 2244443110 00123
Q ss_pred eEEEEeecCCCcEEEEEeCc---------CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~d---------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
..+.|+| ||++++.++.+ +.+.+||+.+++...+.... +.+ ..++|||||+
T Consensus 65 ~~~~~Sp--dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~---------~~~-------~~~~~SPdG~-- 124 (740)
T 4a5s_A 65 NDYSISP--DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIP---------NNT-------QWVTWSPVGH-- 124 (740)
T ss_dssp CEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---------TTE-------EEEEECSSTT--
T ss_pred cceEECC--CCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCC---------Ccc-------eeeEECCCCC--
Confidence 4578886 77899988876 56679999999765432211 111 2789999999
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccc--cceeeeeccccc---------cceeEEEecCCCCEEEEe--cC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLV--AGCRRIYAHAHD---------YHINSISNNSDGETFISA--DD 253 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~--~~~~~~~~~~~~---------~~v~~i~~~~~~~~l~~~--~d 253 (490)
.|+.+ .++.|.+|++..+...... ...... ..++. .....+.|+|||+.||.. ++
T Consensus 125 ----------~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~-~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~ 192 (740)
T 4a5s_A 125 ----------KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII-YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (740)
T ss_dssp ----------CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE-EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred ----------EEEEE-ECCeEEEEECCCCceEEEcCCCCccce-ecCcccccccchhcCCCcceEECCCCCEEEEEEEcc
Confidence 55554 5688999983221111000 000000 01221 122358999999999986 33
Q ss_pred C-----------------------------------cEEEEEcCC---CC--ceeeeeecCCCccCCCCCceEEEEEcCC
Q 011257 254 L-----------------------------------RINLWNLEI---SN--QSFNIVDVKPANMEDLTEVITSAEFHPT 293 (490)
Q Consensus 254 ~-----------------------------------~i~~wd~~~---~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 293 (490)
+ .|++||+.+ +. ....+. .+..+.+|...+..++|+||
T Consensus 193 ~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~wspd 270 (740)
T 4a5s_A 193 TEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT--APASMLIGDHYLCDVTWATQ 270 (740)
T ss_dssp TTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC--CCHHHHTSCEEEEEEEEEET
T ss_pred cCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec--CCccCCCCCeEEEEEEEeCC
Confidence 3 355666653 21 111110 00011137778999999999
Q ss_pred CCcEEEEEeC----CCeEEEEeCCCccc---ccccccee--ccccCCCccccccccccce-----EEEEECCCCCEEE-E
Q 011257 294 HCNMLAYSSS----KGSIRLIDMRQSAL---CDTHSKLF--EEQEAPGTRSFFTEIIASI-----SDIKFARNGRHIL-S 358 (490)
Q Consensus 294 ~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~h~~~i-----~~l~~sp~g~~l~-s 358 (490)
| ++++.... +..|++||+.+++. +.. +..+ ..+. ..+ ..+.|+|||+.|+ .
T Consensus 271 g-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~-~~~l~~~~~~------------~~v~~~~~~~p~fspDG~~l~~~ 336 (740)
T 4a5s_A 271 E-RISLQWLRRIQNYSVMDICDYDESSGRWNCLV-ARQHIEMSTT------------GWVGRFRPSEPHFTLDGNSFYKI 336 (740)
T ss_dssp T-EEEEEEEESSTTEEEEEEEEEETTTTEEEECG-GGCEEEECSS------------SCSSSSSCCCCEECTTSSEEEEE
T ss_pred C-eEEEEEeCCCCCEEEEEEEECCCCccccceeE-EEEeeeccCC------------ceEccCcCCCceEcCCCCEEEEE
Confidence 9 76665433 34799999988751 100 1122 1111 223 3678999999877 5
Q ss_pred Ec--C--CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecC-----C--eEEEEec
Q 011257 359 RD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----N--LFRVFGC 427 (490)
Q Consensus 359 g~--d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g--~i~vw~~ 427 (490)
.+ + ..|.+||+.. +... .+...... |..+. .+|++.|+..+.. + .|+..++
T Consensus 337 ~s~~~G~~~l~~~~~~~-~~~~-~lT~g~~~---------------v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 337 ISNEEGYRHICYFQIDK-KDCT-FITKGTWE---------------VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp EECTTSCEEEEEEETTC-SSCE-ESCCSSSC---------------EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred EEcCCCceEEEEEECCC-CceE-ecccCCEE---------------EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence 43 2 6788888874 4433 33322211 22332 2446655544332 3 4444455
Q ss_pred CCCceeeeEec----cCCCceEEEEEccCCCCCCCCc
Q 011257 428 SEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 428 ~~~~~~~~~~~----~~~~~v~~~~~sp~~~~~~~~~ 460 (490)
.+++. ...+. ..........|||++.......
T Consensus 399 ~g~~~-~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 399 IDYTK-VTCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp TEEEE-EEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CCCCc-ceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 44332 11232 1245688999999998655443
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=5.9e-19 Score=166.55 Aligned_cols=292 Identities=10% Similarity=0.071 Sum_probs=172.2
Q ss_pred ccccEEE-----EEECCCCCEEEEecC-CCc--EEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccce
Q 011257 34 EVDIISA-----IEFDKSGDHLATGDR-GGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (490)
Q Consensus 34 h~~~V~~-----~~~s~dg~~latg~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~ 105 (490)
|...+.. .+|||||++||+++. +|. |.+||+.+++. .....++.
T Consensus 29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----------------------~~lt~~~~----- 80 (388)
T 3pe7_A 29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----------------------TQLTEGRG----- 80 (388)
T ss_dssp TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----------------------EECCCSSC-----
T ss_pred CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----------------------EEeeeCCC-----
Confidence 4444555 889999999999887 664 77778776552 12223333
Q ss_pred eeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 106 ~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
..+..+.|+| +++.|+.++.++.|++||+.+++...+...+.. ... .....++|+|+
T Consensus 81 -------~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--------~~~-----~~~~~~~~dg~- 137 (388)
T 3pe7_A 81 -------DNTFGGFLSP--DDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--------WVG-----YGTWVANSDCT- 137 (388)
T ss_dssp -------BCSSSCEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEE-----EEEEEECTTSS-
T ss_pred -------CCccceEEcC--CCCEEEEEeCCCeEEEEECCCCcceeeeechhh--------ccc-----ccceeECCCCC-
Confidence 3344578986 777999999999999999999876665443311 000 00112244544
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE-----EEEe-cCCcEEEE
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-----FISA-DDLRINLW 259 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-----l~~~-~d~~i~~w 259 (490)
+++. +.. ...+ +.+..+. .+.. .+..|.+|
T Consensus 138 -----------~l~~--------~~~--~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 138 -----------KLVG--------IEI--RRED-----------------------WVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp -----------EEEE--------EEE--EGGG-----------------------CCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred -----------eecc--------ccc--cCcc-----------------------cccccccchhhhhhccCCcceEEEE
Confidence 1110 000 0000 0000000 0011 34678899
Q ss_pred EcCCCCceeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCC------CeEEEEeCCCccccccccceeccccCCC
Q 011257 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
|+.++. ... +..+...+..++|+| ++ +.|+....+ ..|.++|...+.. ..+..+..
T Consensus 174 d~~~g~-~~~--------l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~-- 236 (388)
T 3pe7_A 174 DLKTGE-STV--------ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHAE-- 236 (388)
T ss_dssp ETTTCC-EEE--------EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCCT--
T ss_pred ECCCCc-eEE--------eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCCC--
Confidence 988543 322 233456789999999 98 778777653 3788888776542 22222210
Q ss_pred ccccccccccceEEEEECCCCCEEEEE-c-C-C---eEEEEeccCCCCcee--eeeeeccccccccccccCCCccceeeE
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSR-D-Y-M---TLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d-~---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
...+..++|+|||+.|+.. . + + .|.+||+.+ ++... .+..+..... . ...+
T Consensus 237 --------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~---------~---~~~~ 295 (388)
T 3pe7_A 237 --------GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS---------N---YDGS 295 (388)
T ss_dssp --------TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE---------C---TTSS
T ss_pred --------CcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee---------c---CCCC
Confidence 0247788999999987653 2 2 2 499999986 55322 2222110000 0 0135
Q ss_pred EEcCCCCEEEEe---------ecCCeEEEEecCCCceeeeEeccCCC-----------ceEEEEEccCCCCCCCCc
Q 011257 405 CLSGDGGRVATG---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 405 ~~s~d~~~l~s~---------~~dg~i~vw~~~~~~~~~~~~~~~~~-----------~v~~~~~sp~~~~~~~~~ 460 (490)
+|+|||+.|+.. ..+..|++||+.+++. ..+..+.. .+..++|+|||+.....+
T Consensus 296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp EEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred eEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 799999988754 4466899999998765 45555555 578899999998776654
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=5.9e-19 Score=180.42 Aligned_cols=279 Identities=13% Similarity=0.043 Sum_probs=174.3
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
.++|+| ++. ++..+.|++|++||+.+++...+...+.... .....++|||||+
T Consensus 20 ~~~~s~--dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~SpDg~------------ 72 (719)
T 1z68_A 20 FPNWIS--GQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKS------------VNASNYGLSPDRQ------------ 72 (719)
T ss_dssp CCEESS--SSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHT------------TTCSEEEECTTSS------------
T ss_pred ccEECC--CCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccc------------cceeeEEECCCCC------------
Confidence 578986 554 5555579999999999998777665432100 0123789999999
Q ss_pred ccccCCC---------CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCce
Q 011257 197 SSFPPGG---------VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (490)
Q Consensus 197 ~l~~~~~---------~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~ 267 (490)
+|+.++. ++.|++||+ ...+.... . .+ ...+..++|+|||+.|+.+.++.|++|++.++..
T Consensus 73 ~la~~~~~~~~~~~s~~~~i~~~d~-~~g~~~~~---~-~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~- 142 (719)
T 1z68_A 73 FVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRG---N-EL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPP- 142 (719)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEET-TTTEECCS---S-CC----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCC-
T ss_pred eEEEEecCceeEEeecceEEEEEEC-CCCccccc---e-ec----CcccccceECCCCCEEEEEECCeEEEEeCCCCCc-
Confidence 6666654 689999992 22111000 0 11 1457889999999999999888999999985433
Q ss_pred eeeeecCCCccCCCCCc-----------------eEEEEEcCCCCcEEEEEeCCC-------------------------
Q 011257 268 FNIVDVKPANMEDLTEV-----------------ITSAEFHPTHCNMLAYSSSKG------------------------- 305 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~-----------------v~~~~~~p~~~~~l~~~~~dg------------------------- 305 (490)
.++. ..++... ..+++|+||| +.|++++.|.
T Consensus 143 ~~l~------~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp 215 (719)
T 1z68_A 143 FQIT------FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP 215 (719)
T ss_dssp EECC------CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred EEEe------cCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence 2221 1222221 2489999999 8998887652
Q ss_pred ---------eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc---C--CeEEEEe---
Q 011257 306 ---------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y--MTLKLWD--- 368 (490)
Q Consensus 306 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~---d--~~i~iwd--- 368 (490)
.|++||+.+++.... ..+... ..+.+|...+.+++||||++++++.. + ..|.+||
T Consensus 216 ~~g~~~~~~~l~~~d~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 216 KAGAKNPVVRIFIIDTTYPAYVGP--QEVPVP------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp BTTSCCCEEEEEEEESSCHHHHCC--EECCCC------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred CCCCCCCeeEEEEEECCCCCccce--eEccCC------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccC
Confidence 788999987653100 011000 01233457899999999988777742 1 3588889
Q ss_pred -ccCCCCceeee----eeeccccccccccccCCCccceeeEEEcCCCCEEEE--eecCC--eEEEEecCCCceeeeEecc
Q 011257 369 -INMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 369 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~~~dg--~i~vw~~~~~~~~~~~~~~ 439 (490)
+.+ ++....+ ..+...... . ....+.|+|||+.|+. ...+| .|++|++.+++. ..+..
T Consensus 288 ~~~~-g~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~--~~lt~ 354 (719)
T 1z68_A 288 DWQT-WDCPKTQEHIEESRTGWAGG-------F---FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA--IQITS 354 (719)
T ss_dssp SSSS-EECCGGGEEEEECSSSCSSS-------S---SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC--EECSC
T ss_pred CCCC-CceEEEEecccccCCceEcc-------c---cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce--Eeccc
Confidence 664 4444333 233322100 0 0015789999996554 43455 577788877653 45666
Q ss_pred CCCceEEEEEccCCCCCCCCcc
Q 011257 440 SKNPMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 440 ~~~~v~~~~~sp~~~~~~~~~~ 461 (490)
+...+..+.++ ++......+.
T Consensus 355 ~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 355 GKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp SSSCEEEEEEE-CSSEEEEEES
T ss_pred CceEEEEEEEE-eCCEEEEEEe
Confidence 66667777777 6665554443
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=1.8e-16 Score=147.28 Aligned_cols=278 Identities=9% Similarity=0.014 Sum_probs=173.3
Q ss_pred EEEEeecCCCcEEEEEe----------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
.++|+| ++++++++. .+++|.+||..+.+........... ......|..++++|+|+
T Consensus 54 ~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---------~~~g~~p~~i~~spdg~-- 120 (361)
T 2oiz_A 54 HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---------VQGLNYDGLFRQTTDGK-- 120 (361)
T ss_dssp EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------CCBCCCGGGEEECTTSS--
T ss_pred ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------cccCCCcceEEECCCCC--
Confidence 789986 677888875 3678999999988776655433110 00012344889999999
Q ss_pred ccccccCCCCccccCC--CCCcEEEeeeecccccccccceeee-eccccccceeEEEecCCC-CEEEEe-cCCcEEEEEc
Q 011257 187 ERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 261 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~--~~g~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~ 261 (490)
+|+++. .+++|.+||+ ... +.... + . . .....+.+.|++ ..+++. .||.+.+|+.
T Consensus 121 ----------~l~v~n~~~~~~v~v~d~-~~~------~~~~~~i-~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 121 ----------FIVLQNASPATSIGIVDV-AKG------DYVEDVT-A-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp ----------EEEEEEESSSEEEEEEET-TTT------EEEEEEG-G-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred ----------EEEEECCCCCCeEEEEEC-CCC------cEEEEEe-c-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 666664 3689999992 211 11222 1 1 1 112235567765 455555 7899999988
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
...+........ ...+.....++ .+.++|++ ..++..+.++.+.++|+....... ...+...... ........
T Consensus 181 ~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~--~~~~~~~p 253 (361)
T 2oiz_A 181 GEDGKVASQSRS-KQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE--DKAKNWVP 253 (361)
T ss_dssp CTTSSEEEEEEC-CCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH--HHHTTCEE
T ss_pred CCCCcEeeeccc-cceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc--cccccccc
Confidence 754443311110 00122222222 33446777 677777889999999997653210 1111100000 00000000
Q ss_pred cceEEEEECCCCCEEEEE-c-----------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 342 ASISDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg-~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
.....++|+|+++.++++ + .+.|.+||+.+ .+.+.++..+. . ..++|+||
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spd 315 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQ 315 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETT
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCC
Confidence 112237899998877764 3 24899999997 88888887765 3 28999999
Q ss_pred CCEEEEeecCCeEEEEecCCC--ceeeeEeccCCCceEEEEEccCCC
Q 011257 410 GGRVATGSYSNLFRVFGCSEG--SAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 410 ~~~l~s~~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
|++|++++. +.|.+||..++ +. +..+..+....+.++++|+|.
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~-~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKL-LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEE-EEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECCCCccee-eEEeccCCCCcEEEEecCCCC
Confidence 999998887 99999999999 76 566666777889999999986
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=2.8e-18 Score=162.26 Aligned_cols=285 Identities=10% Similarity=0.056 Sum_probs=181.7
Q ss_pred ccEEEEEECCCCCEEEEecCC---CcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 36 DIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
..+.+++|||||++||..... ..|.+||+.+++. ..+..+..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~------------------------~~l~~~~~----------- 80 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA------------------------VQLTEGKG----------- 80 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE------------------------EECCCSSC-----------
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE------------------------EEeecCCC-----------
Confidence 347788999999998876543 3677888776541 11222210
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.....+.|+| +++.|+.++.++.|++||+.+++...+...+. .|+++|+
T Consensus 81 ~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---------------------~~~~~g~-------- 129 (396)
T 3c5m_A 81 DNTFGGFIST--DERAFFYVKNELNLMKVDLETLEEQVIYTVDE---------------------EWKGYGT-------- 129 (396)
T ss_dssp BCTTTCEECT--TSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------------------TEEEEEE--------
T ss_pred CccccceECC--CCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---------------------ccCCCCC--------
Confidence 1122367886 67799999999999999999987666544331 2666766
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe------cCCcEEEEEcCCCCc
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQ 266 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~------~d~~i~~wd~~~~~~ 266 (490)
.|+....+....+|. ..+.|+|+++.++.. .+..|.+||+.+..
T Consensus 130 ----~l~~~~~~~~~~~~~-------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~- 179 (396)
T 3c5m_A 130 ----WVANSDCTKLVGIEI-------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE- 179 (396)
T ss_dssp ----EEECTTSSEEEEEEE-------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-
T ss_pred ----EEEeccCCccccccc-------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCc-
Confidence 455544444444432 123477888877653 35678999987443
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcC-CCCcEEEEEeCC------CeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
...+ ..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..++. ..+..+..
T Consensus 180 ~~~~--------~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~--------- 236 (396)
T 3c5m_A 180 LEVI--------HQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHAE--------- 236 (396)
T ss_dssp EEEE--------EEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCCT---------
T ss_pred EEee--------ccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccCC---------
Confidence 3222 23456788999999 77 666665543 4688888876542 12211100
Q ss_pred cccceEEEEECCCCCEEEEE-cC-----CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCE
Q 011257 340 IIASISDIKFARNGRHILSR-DY-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGR 412 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~ 412 (490)
...+..++|+|||++|+.. .+ +.|.+||+.+ ++... +..... . .+.|+| ||++
T Consensus 237 -~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~~~----------------~-~~~~s~~dg~~ 296 (396)
T 3c5m_A 237 -GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEE-VMVMPP----------------C-SHLMSNFDGSL 296 (396)
T ss_dssp -TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEE-EEECCS----------------E-EEEEECSSSSE
T ss_pred -CccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEE-eeeCCC----------------C-CCCccCCCCce
Confidence 1357889999999987764 22 3499999985 54332 221111 1 378999 9998
Q ss_pred EEEee----------------cCCeEEEEecCCCceeeeEeccCCC-----------ceEEEEEccCCCCCCCCcc
Q 011257 413 VATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL 461 (490)
Q Consensus 413 l~s~~----------------~dg~i~vw~~~~~~~~~~~~~~~~~-----------~v~~~~~sp~~~~~~~~~~ 461 (490)
|++++ .++.|++||+.+++. ..+..+.. .+..++|+|||......+.
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 88754 347899999998865 34444443 2567899999987665543
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.78 E-value=1.6e-15 Score=136.54 Aligned_cols=264 Identities=11% Similarity=0.193 Sum_probs=177.0
Q ss_pred ccccccccccccccccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccc
Q 011257 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (490)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (490)
.....|.+...|+.+.. ...|-..+.+++++++|+++++...++.|.+||.....
T Consensus 8 ~~~~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~----------------------- 62 (286)
T 1q7f_A 8 IKRQRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF----------------------- 62 (286)
T ss_dssp CCCEEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-----------------------
T ss_pred cccceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE-----------------------
Confidence 34455666666775543 34567889999999999988888889999999976321
Q ss_pred ccccc------ccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeC-cCeEEEEEccCCeEEEEeeeccCCCcCCCC
Q 011257 92 YKTEF------QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (490)
Q Consensus 92 ~~~~~------~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 164 (490)
...+ .++. ..+..+++.+ .++.++++... ++.|++||. +++......
T Consensus 63 -~~~~~~~~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~----------- 116 (286)
T 1q7f_A 63 -KFQFGECGKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG----------- 116 (286)
T ss_dssp -EEEECCBSSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEECT-TSCEEEEEC-----------
T ss_pred -EEEecccCCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEECC-CCcEEEEec-----------
Confidence 1111 1222 4478888852 34555555533 889999984 333222110
Q ss_pred CCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC
Q 011257 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 244 (490)
Q Consensus 165 ~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 244 (490)
..+...+..++++++
T Consensus 117 -----------------------------------------------------------------~~~~~~~~~i~~~~~ 131 (286)
T 1q7f_A 117 -----------------------------------------------------------------ATILQHPRGVTVDNK 131 (286)
T ss_dssp -----------------------------------------------------------------TTTCSCEEEEEECTT
T ss_pred -----------------------------------------------------------------CccCCCceEEEEeCC
Confidence 011134578999999
Q ss_pred CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccc
Q 011257 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (490)
Q Consensus 245 ~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 323 (490)
++++++. .++.|.+||.. .. ....+ ....+...+..++++|++ +++++...++.|++||..... +.
T Consensus 132 g~l~v~~~~~~~i~~~~~~-g~-~~~~~-----~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~-----~~ 198 (286)
T 1q7f_A 132 GRIIVVECKVMRVIIFDQN-GN-VLHKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-----LR 198 (286)
T ss_dssp SCEEEEETTTTEEEEECTT-SC-EEEEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-----EE
T ss_pred CCEEEEECCCCEEEEEcCC-CC-EEEEe-----CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE-----EE
Confidence 9988877 68899999965 33 32222 112344568999999999 888888889999999975432 23
Q ss_pred eeccccCCCccccccccccceEEEEECCCCCEEEEEc-CC-eEEEEeccCCCCceeeeeeeccccccccccccCCCccce
Q 011257 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
.+.... +...+..++++++|+++++.. ++ .|.+||.. ++.+..+..+..... +
T Consensus 199 ~~~~~g----------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~-------------~ 253 (286)
T 1q7f_A 199 QIGGEG----------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-------------C 253 (286)
T ss_dssp EESCTT----------TSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-------------E
T ss_pred EEccCC----------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCc-------------c
Confidence 332211 114578999999999888874 44 99999964 677776665432210 3
Q ss_pred eeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 402 FECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
.+++++|+|+++++ +.|+.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 48999999987777 67999999998754
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=7.7e-17 Score=164.87 Aligned_cols=279 Identities=11% Similarity=0.068 Sum_probs=168.8
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
..+++|+| ++.+++++ |++|++||+.+++...+...+.... . ......++|||||+
T Consensus 19 ~~~~~w~~--dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~~~Spdg~---------- 74 (740)
T 4a5s_A 19 LYSLRWIS--DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDE--------F--GHSINDYSISPDGQ---------- 74 (740)
T ss_dssp CCCEEECS--SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTT--------C--CSCCCEEEECTTSS----------
T ss_pred ccccEECC--CCcEEEEc--CCcEEEEECCCCceEEEEechhhhh--------h--cccccceEECCCCC----------
Confidence 56789996 56677775 9999999999998766654432110 0 00011468999999
Q ss_pred CCccccCCCC---------CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCC
Q 011257 195 NDSSFPPGGV---------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 265 (490)
Q Consensus 195 ~~~l~~~~~~---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~ 265 (490)
+|+.++.+ +.+.+||+ ... +..+ +..|...+...+|||||+.||.+.++.|++|++.++.
T Consensus 75 --~l~~~~~~~~~~r~~~~~~~~~~d~-~~~------~~~~--l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 75 --FILLEYNYVKQWRHSYTASYDIYDL-NKR------QLIT--EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLP 143 (740)
T ss_dssp --EEEEEEEEEECSSSCEEEEEEEEET-TTT------EECC--SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred --EEEEEECCeeeEEEccceEEEEEEC-CCC------cEEE--cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCc
Confidence 66666654 56678882 221 1111 2456678899999999999999988899999998543
Q ss_pred ceeeeeecCCCccCCCCCce-----------------EEEEEcCCCCcEEEEEeCCC-----------------------
Q 011257 266 QSFNIVDVKPANMEDLTEVI-----------------TSAEFHPTHCNMLAYSSSKG----------------------- 305 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~p~~~~~l~~~~~dg----------------------- 305 (490)
..++ +..++...+ ..+.|+||| +.|+.++.|.
T Consensus 144 -~~~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (740)
T 4a5s_A 144 -SYRI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (740)
T ss_dssp -CEEC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred -eEEE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCccee
Confidence 3322 222332222 358999999 8888775432
Q ss_pred -------------eEEEEeCCC---ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c---C-CeE
Q 011257 306 -------------SIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---Y-MTL 364 (490)
Q Consensus 306 -------------~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~---d-~~i 364 (490)
+|++||+.+ ++... ...+... ..+.+|...+..++|+|||+.++.. . + ..|
T Consensus 216 ~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~--~~~l~~~------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i 287 (740)
T 4a5s_A 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNAT--SIQITAP------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVM 287 (740)
T ss_dssp EECCBTTSCCCEEEEEEEETTSCCSSSCCC--EEEECCC------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEE
T ss_pred ecCCCCcCcCCeeEEEEEECCCCCCCCcce--EEEecCC------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEE
Confidence 355566655 41000 0111110 0011245779999999999977653 1 2 579
Q ss_pred EEEeccCCCC----c--eeee--eeeccccccccccccCCCccceeeEEEcCCCCEEE-Eeec-C--CeEEEEecCCCce
Q 011257 365 KLWDINMDSG----P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSY-S--NLFRVFGCSEGSA 432 (490)
Q Consensus 365 ~iwd~~~~~~----~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~-d--g~i~vw~~~~~~~ 432 (490)
.+||+.+ ++ + +..+ ..+...+.. .....+.|+|||+.|+ ..+. + ..|++|++.+++.
T Consensus 288 ~~~d~~t-g~~~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 288 DICDYDE-SSGRWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp EEEEEET-TTTEEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred EEEECCC-CccccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 9999987 55 1 2222 223322110 0012678999999877 6664 3 4688899887765
Q ss_pred eeeEeccCCCceEEEEEccCCCCCCC
Q 011257 433 ESTTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 433 ~~~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
..+......+..+. ++|+....+
T Consensus 357 --~~lT~g~~~v~~~~-~~d~~~i~f 379 (740)
T 4a5s_A 357 --TFITKGTWEVIGIE-ALTSDYLYY 379 (740)
T ss_dssp --EESCCSSSCEEEEE-EECSSEEEE
T ss_pred --EecccCCEEEEEEE-EEeCCEEEE
Confidence 34444444555543 244444333
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=1.1e-16 Score=148.54 Aligned_cols=271 Identities=8% Similarity=0.013 Sum_probs=158.4
Q ss_pred CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCC
Q 011257 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (490)
Q Consensus 124 ~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~ 203 (490)
.++.++++++.+++|++||+.+++.......... ..+..++|+|+|+. .+++...
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~-----------~~v~~~~ 63 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--------------FGPGTAMMAPDNRT-----------AYVLNNH 63 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC--------------CSSCEEEECTTSSE-----------EEEEETT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC--------------CCCceeEECCCCCE-----------EEEEeCC
Confidence 3566888999999999999999987665543320 01337899999983 3455667
Q ss_pred CCcEEEeeeecccccccccceeeeecccc-----ccceeEEEecCCCCEEEEe-cC------------CcEEEEEcCCCC
Q 011257 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAH-----DYHINSISNNSDGETFISA-DD------------LRINLWNLEISN 265 (490)
Q Consensus 204 ~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~~~-~d------------~~i~~wd~~~~~ 265 (490)
++.|.+||+ .. .+....+...+ ...+..++|+|+|++|+++ .+ +.|.+||+.+..
T Consensus 64 ~~~i~~~d~-~t------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 64 YGDIYGIDL-DT------CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp TTEEEEEET-TT------TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred CCcEEEEeC-CC------CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 899999992 21 11121211111 2347789999999999988 44 999999998532
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc-------cccc-
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-------RSFF- 337 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~- 337 (490)
.. ..+ ....+...+.+++|+|++ + +++++. .|++||+.+++.. ..+........ ..++
T Consensus 137 ~~-~~~-----~~~~~~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 137 EA-KPV-----RTFPMPRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYT----VALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp GB-CCS-----EEEECCSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEE----EEECSTTCCCTTBCCCBCCCCCC
T ss_pred cc-cee-----eeccCCCcccceeECCCC-c-EEEccC--cEEEEeCCCCcee----ccccccccCCccccCccceeeec
Confidence 11 110 111233457889999999 6 444443 4999999887643 22222110000 0000
Q ss_pred ----cccccceEEEEECCCCCEEEEEc-C-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CC
Q 011257 338 ----TEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DG 410 (490)
Q Consensus 338 ----~~h~~~i~~l~~sp~g~~l~sg~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~ 410 (490)
.........+++++++....... . ..+..+|..+ ++ +..+....... .+..++|+| |+
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-------------~~~~~~~sp~dg 267 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT-GK-THTQEFADLTE-------------LYFTGLRSPKDP 267 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT-CC-EEEEEEEECSS-------------CEEEEEECSSCT
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC-Cc-EEecccccCCC-------------cceeeEecCCCC
Confidence 00001345577777653322111 1 1222244443 21 22221111000 034899999 99
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
++|+++ ++.|.+||+.+++. +..+.. ...+..++|+|++.....+
T Consensus 268 ~~l~~~--~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 268 NQIYGV--LNRLAKYDLKQRKL-IKAANL-DHTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp TEEEEE--ESEEEEEETTTTEE-EEEEEC-SSCCCEEEECSSSSCEEEE
T ss_pred CEEEEE--cCeEEEEECccCeE-EEEEcC-CCCccceEECCCCCEEEEe
Confidence 999888 88999999999876 345543 3457899999999876654
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=2.3e-16 Score=147.29 Aligned_cols=259 Identities=10% Similarity=0.013 Sum_probs=156.3
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEec-CCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
+...+..++|+|||++|++++.+ .|.+|++. +++.. .......+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~------------- 82 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG------------- 82 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------
Confidence 34468899999999999998888 99999987 44311 00000000
Q ss_pred cceeEEEEeecCCCcE--EEEEe-------------CcCeEEEEEcc-CCeEEEEeeeccCCCcCCCCCCccccccccCc
Q 011257 113 EKINKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~--l~~~~-------------~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (490)
+.+..++|+| +|++ ++++. .++++.+|++. .++........... ....+..
T Consensus 83 g~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-----------~~~~~~~ 149 (365)
T 1jof_A 83 GHPRANDADT--NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-----------ENTGIHG 149 (365)
T ss_dssp SSGGGGCTTS--CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-----------TTCCEEE
T ss_pred CCCccEEECC--CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC-----------CCCcceE
Confidence 1133467775 5664 34442 68999999997 45544322211000 0122337
Q ss_pred eEEeccCCccccccccCCCCccccC-CCCCcEEEeeeecccccccccceeeeec-cccccceeEEEecCCCCEEEEe--c
Q 011257 177 KSYMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA--D 252 (490)
Q Consensus 177 ~~~s~~g~~~~~~~~~~~~~~l~~~-~~~g~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~--~ 252 (490)
++|+|+|+ +++++ ..++.|.+|++...... .....+. ..|...+..++|+|+|++++++ .
T Consensus 150 ~~~spdG~------------~l~~~~~~~~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 150 MVFDPTET------------YLYSADLTANKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EEECTTSS------------EEEEEETTTTEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCC------------EEEEEcCCCCEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence 89999999 55544 34679999993211111 1111111 1234668899999999998876 4
Q ss_pred CCcEEEEEcCCC-Ccee---eeeecCCCccCCCCC------ceEEEE-EcCCCCcEEEEEeCC-C-----eEEEEeCC-C
Q 011257 253 DLRINLWNLEIS-NQSF---NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR-Q 314 (490)
Q Consensus 253 d~~i~~wd~~~~-~~~~---~~~~~~~~~~~~~~~------~v~~~~-~~p~~~~~l~~~~~d-g-----~i~iwd~~-~ 314 (490)
++.|.+|++... +... ..+..-+..+.+|.. .+..++ |+|+| ++|+++..+ . .|.+|++. +
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCC
Confidence 789999987632 2221 111111111223332 588999 99999 777666543 2 89999996 4
Q ss_pred ccccccccc-eeccccCCCccccccccccceEEEEECC---CCCEEEEEc-C-CeEEEEeccC
Q 011257 315 SALCDTHSK-LFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM 371 (490)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~l~~sp---~g~~l~sg~-d-~~i~iwd~~~ 371 (490)
++.. . +. ....+. .....++|+| ||++|++++ + +.|.+|+++.
T Consensus 293 g~~~-~-~~~~~~~~~------------~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 293 GSIE-K-QLFLSPTPT------------SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SCEE-E-EEEEEECSS------------CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCEE-E-eeeeeecCC------------CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 4321 0 00 111111 3456789999 899999874 4 8999999985
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=1.3e-15 Score=154.18 Aligned_cols=192 Identities=9% Similarity=-0.002 Sum_probs=123.4
Q ss_pred cccceeEEEecCCCCEEEEe-cC----------CcEEEEEcCCC-----CceeeeeecCCCccC-CCCCceEEEEEcCCC
Q 011257 232 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH 294 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~-~d----------~~i~~wd~~~~-----~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~ 294 (490)
|...+..++|+|||+.|+++ .+ ..|++||+... +... .+. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence 34556789999999999887 55 58999999852 2322 233 455678889999999
Q ss_pred CcEEEEEeCC--------CeEEEEeCC-CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CC--
Q 011257 295 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM-- 362 (490)
Q Consensus 295 ~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~-- 362 (490)
+.|+.++.+ ..|++||+. ++... . ...+.. +|...+..++|+|||+++++++ ++
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~l~~-----------~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRTLLG-----------GPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEEEEE-----------ETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEEeCC-----------CCCceEcceEECCCCeEEEEECCCCCe
Confidence 888877755 379999998 45210 0 122221 1225789999999999776664 36
Q ss_pred eEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEE--ecCCCceeeeEeccC
Q 011257 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF--GCSEGSAESTTLEAS 440 (490)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw--~~~~~~~~~~~~~~~ 440 (490)
.|.+||+.. ++.......+.... ......++..++|+|+++++++++. +.++|| |+.+++ +..+..|
T Consensus 266 ~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~ 334 (662)
T 3azo_A 266 NLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGP 334 (662)
T ss_dssp EEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSS
T ss_pred EEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCC
Confidence 666777654 44333332222110 0001111347899999999999998 999999 555454 4677777
Q ss_pred CCceEEEEEccCCCCCC
Q 011257 441 KNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 441 ~~~v~~~~~sp~~~~~~ 457 (490)
...+..+ +++++....
T Consensus 335 ~~~~~~~-~s~~~~~~~ 350 (662)
T 3azo_A 335 WTEWAAT-LTVSGTRAV 350 (662)
T ss_dssp CCEEEEE-EEEETTEEE
T ss_pred CCeEEEE-EecCCCEEE
Confidence 7777766 255554433
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=1e-14 Score=134.33 Aligned_cols=274 Identities=12% Similarity=0.107 Sum_probs=176.1
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
..|.+++|++++..++....++.++.|.-. ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence 457788899988877777778888888321 122334444 457
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
.+++|.| ++.+++++..++.|.+||..+++......
T Consensus 48 ~~~~~~~--~g~l~~~~~~~~~i~~~d~~~~~~~~~~~------------------------------------------ 83 (333)
T 2dg1_A 48 EGLNFDR--QGQLFLLDVFEGNIFKINPETKEIKRPFV------------------------------------------ 83 (333)
T ss_dssp EEEEECT--TSCEEEEETTTCEEEEECTTTCCEEEEEE------------------------------------------
T ss_pred cCcEECC--CCCEEEEECCCCEEEEEeCCCCcEEEEee------------------------------------------
Confidence 8899985 66677778888999999988776443210
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC----CcEEEEEcCCCCceeee
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNI 270 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----~~i~~wd~~~~~~~~~~ 270 (490)
.+...+.+++++++++++++. .+ +.|.+||...... ...
T Consensus 84 -----------------------------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~-~~~ 127 (333)
T 2dg1_A 84 -----------------------------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL-QDI 127 (333)
T ss_dssp -----------------------------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC-EEE
T ss_pred -----------------------------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE-EEE
Confidence 112457789999999888877 55 6899999874432 212
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+ ....+...+..++++|++ +++++... .+.|..+|..+++. ..+... ...+
T Consensus 128 ~-----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~------------~~~~ 184 (333)
T 2dg1_A 128 I-----EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPIIQN------------ISVA 184 (333)
T ss_dssp E-----CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-----EEEEEE------------ESSE
T ss_pred E-----ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE-----EEeecC------------CCcc
Confidence 1 111234578999999999 77776654 35666666654432 122111 1346
Q ss_pred EEEEECCCCCEEEEE-c-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE
Q 011257 345 SDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 422 (490)
..++|+|+|++|+.+ + ++.|.+||+...+..+..+....... .. .. ..+..++++++|+++++...++.|
T Consensus 185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-----~~--~~-~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY-----FT--GH-EGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-----CC--SS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe-----cC--CC-CCCCceEECCCCCEEEEEcCCCEE
Confidence 889999999876554 3 48999999974244443321110000 00 00 013479999999988888788999
Q ss_pred EEEecCCCceeeeEeccCCC------ceEEEEEccCCCCCCCCc
Q 011257 423 RVFGCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 423 ~vw~~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~~~~~~ 460 (490)
.+||.+ ++. +..+..+.. .+.+++|+||+.....++
T Consensus 257 ~~~d~~-g~~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 257 LVFNKR-GYP-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EEECTT-SCE-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EEECCC-CCE-EEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 999985 544 345544432 689999999976544443
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.67 E-value=7.8e-15 Score=138.22 Aligned_cols=169 Identities=14% Similarity=0.082 Sum_probs=97.1
Q ss_pred cccceeEEEecC-CCCEEEEe-c------CCcEEEEEcCCCCceeeeeecCCCccCCCC--CceEEEEEcCCCCcEEEEE
Q 011257 232 HDYHINSISNNS-DGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYS 301 (490)
Q Consensus 232 ~~~~v~~i~~~~-~~~~l~~~-~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~ 301 (490)
+...+..++|+| +|+.|+.. . ...|.++|..... ... +..+. ..+..++|+|+| +.|+..
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~ 255 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRK--------VKTHAEGESCTHEFWVPDG-SALVYV 255 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEE--------SCCCCTTEEEEEEEECTTS-SCEEEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEE--------eeeCCCCcccccceECCCC-CEEEEE
Confidence 345678899999 99988876 3 2367777776332 221 22233 357789999999 655443
Q ss_pred eC-CC----eEEEEeCCCccccccccceeccccCCCccccccccc-cceEEEEECCCCCEEEEE----------cCCeEE
Q 011257 302 SS-KG----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSR----------DYMTLK 365 (490)
Q Consensus 302 ~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~l~~sp~g~~l~sg----------~d~~i~ 365 (490)
+. ++ .|++||+.+++.. .+..+.... |. .....++|+|||+.|+.. .+..|.
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENR--QLTSMPACS----------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEE--EEEEECCEE----------EEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred ecCCCCCcceEEEEecCCCceE--EEEcCCCce----------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 33 22 3999999987632 112222100 00 001223799999988852 237999
Q ss_pred EEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecC
Q 011257 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS 428 (490)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~ 428 (490)
+||+.. + .+..+..+..... .+.. .....+..++|+|||+.|+.++ .+|...||.+.
T Consensus 324 ~~d~~~-~-~~~~l~~~~~~~~---~~~~-~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 324 VFNMKN-G-TQHRVARHDTSWK---VFEG-DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEETTT-T-EEEEEEECCCCCC---CBTT-BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEeccC-C-ceEEeccccCccc---cccc-ccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 999985 3 4455554443000 0000 0000134789999999888766 46766666554
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=5.5e-14 Score=129.02 Aligned_cols=253 Identities=7% Similarity=0.060 Sum_probs=161.0
Q ss_pred cccEEEEEECCCCCEEEEecCC------------------------CcEEEEEecCCCCCCCcccccccccceeecCCcc
Q 011257 35 VDIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (490)
.+.|.+++++|+|+++++...+ +.|.+||..+++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------------------- 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------------------- 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence 3569999999999999888777 3577777665542
Q ss_pred ccccccc-cCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe-EEEEeeeccCCCcCCCCCCcc
Q 011257 91 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIF 168 (490)
Q Consensus 91 ~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (490)
...+. ++- .....|++.| +|.++++...++.|++|+..+.. .......... .+...
T Consensus 82 --~~~~~~~~~------------~~p~gia~d~--~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~------~g~~~ 139 (329)
T 3fvz_A 82 --LQSSGKNLF------------YLPHGLSIDT--DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ------PGSDQ 139 (329)
T ss_dssp --EEEECTTTC------------SSEEEEEECT--TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB------CCCST
T ss_pred --EeccCCCcc------------CCceEEEECC--CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC------CCCCc
Confidence 11121 222 4578899985 66788888889999999987652 1221111100 00001
Q ss_pred ccccccCceEEec-cCCccccccccCCCCccccCC-CCCcEEEeeeecccccccccceeeeec---------ccccccee
Q 011257 169 GSHVSAIPKSYMA-NGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYA---------HAHDYHIN 237 (490)
Q Consensus 169 ~~~~~~~~~~~s~-~g~~~~~~~~~~~~~~l~~~~-~~g~v~iw~~~~~~~~~~~~~~~~~~~---------~~~~~~v~ 237 (490)
.....|..++++| +|. ++++.+ .++.|++|+ ... . ....+. .++-....
T Consensus 140 ~~~~~P~~ia~~~~~g~------------lyv~d~~~~~~I~~~~-~~g---~----~~~~~~~~g~~~~~~~~~~~~p~ 199 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGA------------VFVSDGYCNSRIVQFS-PSG---K----FVTQWGEESSGSSPRPGQFSVPH 199 (329)
T ss_dssp TCCSSEEEEEECTTTCC------------EEEEECSSCCEEEEEC-TTS---C----EEEEECEECCSSSCCTTEESCEE
T ss_pred cccCCCcEEEEeCCCCe------------EEEEeCCCCCeEEEEc-CCC---C----EEEEeccCCCCCCCCCcccCCCc
Confidence 1123455889999 676 566665 688999988 221 1 111110 11224478
Q ss_pred EEEecCC-CCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-------CCCeEE
Q 011257 238 SISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIR 308 (490)
Q Consensus 238 ~i~~~~~-~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~ 308 (490)
.++++|+ +.++++. .++.|++|+..++ .....+ ....+...+..++++| + ..+++.+ .+.+|+
T Consensus 200 gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~-----~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~ 271 (329)
T 3fvz_A 200 SLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREI-----KHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGF 271 (329)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEE-----CCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEE
T ss_pred EEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEE-----eccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEE
Confidence 9999999 6666666 7899999999843 343332 2244567788999999 4 4444433 345899
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccC
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINM 371 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~ 371 (490)
+||..+++.. ..+... .++......|+++|+|.++++.. ++.|++|++..
T Consensus 272 ~~~~~~g~~~----~~~~~~---------~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 272 VMNFSSGEII----DVFKPV---------RKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEETTTCCEE----EEECCS---------SSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEcCCCeEE----EEEcCC---------CCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 9999988653 333210 11225689999999997667654 59999999873
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=2e-14 Score=133.48 Aligned_cols=277 Identities=10% Similarity=0.027 Sum_probs=158.7
Q ss_pred EEEECCCCCEEEEec----------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeee
Q 011257 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (490)
Q Consensus 40 ~~~~s~dg~~latg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~ 109 (490)
.++|+|||++|+++. .++.|.+||..+.+.. ..+...... .
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~-----------------------~~i~~~~~~------~ 104 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE-----------------------KEISLPPKR------V 104 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE-----------------------EEEEECTTB------C
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE-----------------------EEEEcCccc------c
Confidence 899999999999876 3567999998765522 111110000 0
Q ss_pred eeccceeEEEEeecCCCcEEEEEeC--cCeEEEEEccCCeEEEE-eeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 110 EIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 110 ~~~~~V~~v~~~p~~~~~~l~~~~~--dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
........++++| +|++|+++.. +++|.+||+.+++.... ...... ..+.+.|++..
T Consensus 105 ~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-----------------~~v~~~p~~~~- 164 (361)
T 2oiz_A 105 QGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-----------------WSVIPQPNRPR- 164 (361)
T ss_dssp CBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-----------------EEEEECTTSSS-
T ss_pred ccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-----------------ceeEEcCCCCe-
Confidence 0002345688986 6778888763 68999999999876543 222110 01234455432
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
.+++.+.||.+.+|++............... +...... ..+.+++++..++.. .++.+.++|+....
T Consensus 165 ----------~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 165 ----------SFMTICGDGGLLTINLGEDGKVASQSRSKQM-FSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp ----------EEEEEETTSSEEEEEECTTSSEEEEEECCCC-SCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred ----------eEEEECCCCcEEEEEECCCCcEeeeccccce-EcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 4455666777777662111111000000001 1111122 223346677666665 78899999987433
Q ss_pred ce-eeeeecCCC---ccCCCCCceEEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCccccccccceeccccCC
Q 011257 266 QS-FNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 266 ~~-~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.. ...+..... ...-.......++|+|++..++++.. ..+.|.+||+.+++.. ..+..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----~~i~~~--- 305 (361)
T 2oiz_A 233 VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----ARIPGR--- 305 (361)
T ss_dssp CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----EEEECT---
T ss_pred ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----EEEecC---
Confidence 21 111111000 00000111123789999834444443 1358999999988653 444443
Q ss_pred CccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCC--CceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
. +.+++|+|||++|++++++.|.+||..+ + +.+..+...... -..++++|+
T Consensus 306 ----------~-p~~ia~spdg~~l~v~n~~~v~v~D~~t-~~l~~~~~i~~~G~~---------------P~~~~~~p~ 358 (361)
T 2oiz_A 306 ----------D-ALSMTIDQQRNLMLTLDGGNVNVYDISQ-PEPKLLRTIEGAAEA---------------SLQVQFHPV 358 (361)
T ss_dssp ----------T-CCEEEEETTTTEEEEECSSCEEEEECSS-SSCEEEEEETTSCSS---------------EEEEEECCC
T ss_pred ----------C-eeEEEECCCCCEEEEeCCCeEEEEECCC-CcceeeEEeccCCCC---------------cEEEEecCC
Confidence 3 7899999999999987669999999997 7 777776332221 137899999
Q ss_pred CC
Q 011257 410 GG 411 (490)
Q Consensus 410 ~~ 411 (490)
|+
T Consensus 359 G~ 360 (361)
T 2oiz_A 359 GG 360 (361)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.64 E-value=9.5e-14 Score=125.50 Aligned_cols=242 Identities=9% Similarity=0.024 Sum_probs=158.9
Q ss_pred cccccEEEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~-~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
.+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~----------- 68 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS----------- 68 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence 3456678999999998 7888888999999998754 1 1222333
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..+.++++.| ++.++++...++.|.+||..+++.........
T Consensus 69 -~~~~~l~~~~--dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------------------- 110 (296)
T 3e5z_A 69 -HHQNGHCLNK--QGHLIACSHGLRRLERQREPGGEWESIADSFE----------------------------------- 110 (296)
T ss_dssp -SSEEEEEECT--TCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred -CCcceeeECC--CCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence 5588999986 66677766667899999998776544321110
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE----e-c-------------C
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------d 253 (490)
......+..++++|+|+++++ | . .
T Consensus 111 --------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 111 --------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp --------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred --------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 000023455677777776665 2 1 2
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC-Cccc-cccccceeccccCC
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAP 331 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~ 331 (490)
+.|..++.. +.... +..+...+..++|+|++ +.+++.+.++.|.+||+. .++. .. ...+..
T Consensus 153 ~~l~~~~~~--g~~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~~---- 215 (296)
T 3e5z_A 153 RWVFRLAPD--GTLSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFTV---- 215 (296)
T ss_dssp CEEEEECTT--SCEEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEECC----
T ss_pred cEEEEECCC--CCEEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEeeC----
Confidence 344444443 22221 12345567899999999 777777888999999987 3332 10 122211
Q ss_pred CccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE-cCCC
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDG 410 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~ 410 (490)
+...+..++++++|+++++. ++.|.+||.+ ++.+..+..+.. . .+++| +|++
T Consensus 216 --------~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~ 268 (296)
T 3e5z_A 216 --------EPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEG 268 (296)
T ss_dssp --------SSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTS
T ss_pred --------CCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCC
Confidence 11456789999999988777 8899999986 677777765543 2 38889 5899
Q ss_pred CEEEEeecCCeEEEEecCCCc
Q 011257 411 GRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~ 431 (490)
+.|++++.++ +.-++.++.+
T Consensus 269 ~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 269 RTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp CEEEEEETTE-EEEEECSCCB
T ss_pred CEEEEEcCCe-EEEEEccccc
Confidence 9888888764 4455555443
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=1.4e-13 Score=127.38 Aligned_cols=272 Identities=9% Similarity=0.049 Sum_probs=164.5
Q ss_pred cccccccEEEEEECCCCCEEEEec---------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCc
Q 011257 31 EVQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEP 101 (490)
Q Consensus 31 ~~~h~~~V~~~~~s~dg~~latg~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~ 101 (490)
++.....+...++ ||+++|... .++.|.+||+.+++. ..+
T Consensus 10 ~l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------------------------~~l----- 58 (347)
T 2gop_A 10 TFAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR------------------------RFI----- 58 (347)
T ss_dssp CCCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------------------------EEE-----
T ss_pred cceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce------------------------EEc-----
Confidence 3444567888888 999888752 256788888876541 111
Q ss_pred ccceeeeeeeccceeEEEEeecCCCcEEEEEeCc---C--eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCc
Q 011257 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (490)
Q Consensus 102 ~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~d---g--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (490)
..+..++|+| +|++|+.++.+ + .|.+|++.+++...+..... ...
T Consensus 59 -----------~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-----------------~~~ 108 (347)
T 2gop_A 59 -----------ENATMPRISP--DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-----------------IRS 108 (347)
T ss_dssp -----------ESCEEEEECT--TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-----------------EEE
T ss_pred -----------ccCCCeEECC--CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-----------------ccc
Confidence 2267789997 67788877643 2 47888888887666544321 126
Q ss_pred eEEeccCCccccccccCCCCccccCCC---------------------------CCcEEEeeeecccccccccceeeeec
Q 011257 177 KSYMANGGCGERNFGCASNDSSFPPGG---------------------------VSSLRLPVVVTSQETNLVAGCRRIYA 229 (490)
Q Consensus 177 ~~~s~~g~~~~~~~~~~~~~~l~~~~~---------------------------~g~v~iw~~~~~~~~~~~~~~~~~~~ 229 (490)
++|+|||+. |+..+. ...|.+|+ +.. .+..+.+
T Consensus 109 ~~wspdg~~------------l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d-~~~------~~~~~~l- 168 (347)
T 2gop_A 109 LEWNEDSRK------------LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD-TES------EEVIEEF- 168 (347)
T ss_dssp EEECTTSSE------------EEEEEECCCC---------CCCC---------CEEEEEEEE-TTT------TEEEEEE-
T ss_pred eeECCCCCE------------EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE-CCC------CeEEeee-
Confidence 799999984 333221 24577777 211 1111222
Q ss_pred cccccceeEEEecCCCCEEEEe-cC------C-cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEE
Q 011257 230 HAHDYHINSISNNSDGETFISA-DD------L-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 301 (490)
Q Consensus 230 ~~~~~~v~~i~~~~~~~~l~~~-~d------~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 301 (490)
.. . .+..++|+|+| +++++ .+ . ...+|.+. .+....+ ..+ ..+..+ +|+| +.|+.+
T Consensus 169 ~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l--------~~~-~~~~~~--spdg-~~l~~~ 232 (347)
T 2gop_A 169 EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM--------FEK-VSFYAV--DSDG-ERILLY 232 (347)
T ss_dssp EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE--------EEE-ESEEEE--EECS-SCEEEE
T ss_pred cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe--------ccC-cceeeE--CCCC-CEEEEE
Confidence 22 2 67889999999 77776 33 2 45566555 3333322 222 344444 9999 777766
Q ss_pred eCC--------CeEEEEeCCCccccccccceeccccCCCccccccccccceEE-EEECCCCCEEEEE-cCCeEEEEeccC
Q 011257 302 SSK--------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DYMTLKLWDINM 371 (490)
Q Consensus 302 ~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~g~~l~sg-~d~~i~iwd~~~ 371 (490)
+.+ ..|.+|| +++.. ..... |...+.. +.|+ |+ +++++ .++.++|| +..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~------------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVM----GILDE------------VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEE----ESSTT------------CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred EccccCCccccceEEEEC--CCceE----ecccc------------CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 643 4688888 43321 11122 1256775 8999 88 77776 45999999 873
Q ss_pred CCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeE-EEEecCCCceeeeEeccCCC
Q 011257 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF-RVFGCSEGSAESTTLEASKN 442 (490)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i-~vw~~~~~~~~~~~~~~~~~ 442 (490)
++... +..+... |.+++|+| .++++++.++.. .||.+. ++. ..+..|..
T Consensus 292 -g~~~~-~~~~~~~---------------v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~--~~lt~~n~ 341 (347)
T 2gop_A 292 -GEIKP-IAKGRHW---------------IMGFDVDE--IVVYLKETATRLRELFTWD-GEE--KQLTDYND 341 (347)
T ss_dssp -SSEEE-EECSSSE---------------EEEEEESS--SEEEEEECSSSCCEEEEES-SSE--EECCCTTS
T ss_pred -CceEE-EecCCCe---------------EEeeeeeC--cEEEEEcCCCChHHheEeC-CcE--EEeccccH
Confidence 55433 3222222 45899999 677777777654 777776 543 44555543
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=1.9e-12 Score=126.33 Aligned_cols=324 Identities=11% Similarity=0.028 Sum_probs=190.8
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEec--CCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
....+..+.|||||++|++++.|+.|.+||+. +.+. +..+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----------------------v~~i~~G------------ 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----------------------VAEIKIG------------ 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------------------EEEEECC------------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------------------eEEEecC------------
Confidence 34467799999999999999999999999985 3331 1222211
Q ss_pred ccceeEEEEee--cCCCcEEEEEe-CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 112 EEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 112 ~~~V~~v~~~p--~~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
.....++|+| .++|++++++. .+++|.++|..+.+............ .+.-+.+......+..++++..
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~----~~~~~~p~~rva~i~~s~~~~~--- 311 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY----DEQEYHPEPRVAAILASHYRPE--- 311 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT----TTCCEESCCCEEEEEECSSSSE---
T ss_pred -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc----ccccccCCCceEEEEEcCCCCE---
Confidence 2356789982 01566777654 55999999999988766554322100 0000000001114555666543
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCc
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 266 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~ 266 (490)
+++.....|.|.++| ....... . ... .........+.|+|++++|+++ .++.|.++|..+. +
T Consensus 312 --------~vv~~~~~g~v~~vd-~~~~~~~---~-v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-k 375 (567)
T 1qks_A 312 --------FIVNVKETGKILLVD-YTDLNNL---K-TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-K 375 (567)
T ss_dssp --------EEEEETTTTEEEEEE-TTCSSEE---E-EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-E
T ss_pred --------EEEEecCCCeEEEEe-cCCCccc---e-eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-c
Confidence 556667788888887 2211100 0 001 1122345678999999998776 6899999999854 4
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCcccc---ccccceeccccCCCcccccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALC---DTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
....++.- .-..|.+.-..+ ++|++..+++++. .++.|.++|..+.+.. .+.++.+.... .
T Consensus 376 l~~~i~vg--g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g------------~ 440 (567)
T 1qks_A 376 LVAIEDTG--GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG------------G 440 (567)
T ss_dssp EEEEEECS--SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------------S
T ss_pred EEEEEecc--CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC------------C
Confidence 44443220 112344322222 6887536666665 4689999999873210 11133333321 2
Q ss_pred ceEEEEECCCCCEEEEEc--------CCeEEEEeccCC-----CCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 343 SISDIKFARNGRHILSRD--------YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~--------d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
.-..+..+|++++|.+.. .++|.++|+.+. .+....+.... + ..+. +.-..+..+.|+|+
T Consensus 441 g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~-~----~~~~--~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 441 GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE-W----AGIT--EGQPRVVQGEFNKD 513 (567)
T ss_dssp CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH-H----HTCC--SSCCEEEEEEECTT
T ss_pred CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccc-c----cccC--CCCcceEeeeECCC
Confidence 224477899999998854 259999999862 12223332100 0 0000 00011458999999
Q ss_pred CCEEEEeec-----CCeEEEEecCCCceeeeEecc
Q 011257 410 GGRVATGSY-----SNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 410 ~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~ 439 (490)
|+.+..+.. ++.|.|+|.++++. ..+++.
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~-~~~i~~ 547 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTLEL-KHVIKD 547 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTTEE-EEEECC
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCceE-EEEeCC
Confidence 998776533 79999999999876 466654
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=4.6e-13 Score=130.71 Aligned_cols=306 Identities=10% Similarity=0.055 Sum_probs=193.6
Q ss_pred CCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEEEeecC
Q 011257 45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA 124 (490)
Q Consensus 45 ~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~ 124 (490)
+.+.++++...++.|.++|..+++. +..+... ..+..+.|+|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v-----------------------~~~i~~g-------------~~p~~v~~Sp-- 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRLSA-- 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEECT--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE-----------------------EEEEeCC-------------CCccceEECC--
Confidence 4455677777889999999987763 2222211 3367899986
Q ss_pred CCcEEEEEeCcCeEEEEEcc--CCeEEEEeeeccCCCcCCCCCCccccccccCceEEe----ccCCccccccccCCCCcc
Q 011257 125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM----ANGGCGERNFGCASNDSS 198 (490)
Q Consensus 125 ~~~~l~~~~~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~g~~~~~~~~~~~~~~l 198 (490)
+++++++++.|+.|.+||+. +.+........ ..|..++|+ |||+ ++
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G----------------~~P~~ia~s~~~~pDGk------------~l 258 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG----------------SEARSIETSKMEGWEDK------------YA 258 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEECC----------------SEEEEEEECCSTTCTTT------------EE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC----------------CCCceeEEccccCCCCC------------EE
Confidence 77899999999999999995 66554433221 123478999 6999 45
Q ss_pred cc-CCCCCcEEEeeeecccccccccceeeeec------c---ccc-cceeEEEecCCCCEEEEe--cCCcEEEEEcCCCC
Q 011257 199 FP-PGGVSSLRLPVVVTSQETNLVAGCRRIYA------H---AHD-YHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (490)
Q Consensus 199 ~~-~~~~g~v~iw~~~~~~~~~~~~~~~~~~~------~---~~~-~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~ 265 (490)
++ ....+++.++| .... +..+.+. . .|. ..+..+..++++..++.. .+|.|.++|.....
T Consensus 259 ~v~n~~~~~v~ViD-~~t~------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 259 IAGAYWPPQYVIMD-GETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp EEEEEETTEEEEEE-TTTC------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred EEEEccCCeEEEEE-CCCC------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 54 45568999988 2211 1111111 0 121 256788888887776665 68999999987443
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEE-EEeCCCeEEEEeCCCccccccccceecc-ccCCCccccccccccc
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIAS 343 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~ 343 (490)
...+.. + ........+.|+|++ ++|+ +...++.|.++|+.++++. ..+.. ... .|.+.
T Consensus 332 -~~~v~~-----i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~~--------Phpg~ 391 (567)
T 1qks_A 332 -NLKTTE-----I-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV----AIEDTGGQT--------PHPGR 391 (567)
T ss_dssp -EEEEEE-----E-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSSS--------BCCTT
T ss_pred -cceeee-----e-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEE----EEEeccCcC--------CCCcc
Confidence 222211 1 123456788999999 6654 5556899999999998753 23322 111 12121
Q ss_pred eEEEEECCC-CCEEEEE--cCCeEEEEeccCC------CCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 011257 344 ISDIKFARN-GRHILSR--DYMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (490)
Q Consensus 344 i~~l~~sp~-g~~l~sg--~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 414 (490)
-..+ ++|+ +...+++ .++.|.++|.... .+.++++....... ..+..+|++++|.
T Consensus 392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~---------------~~i~~~p~~~~l~ 455 (567)
T 1qks_A 392 GANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS---------------LFIKTHPNSQYLY 455 (567)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCSEEE
T ss_pred ceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC---------------EEEEeCCCCCeEE
Confidence 1122 5787 4455555 3589999999852 23455555432110 1578999999988
Q ss_pred Eeec-------CCeEEEEecCCC-----ceeeeEec--------cCCCceEEEEEccCCCCCCCC
Q 011257 415 TGSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 415 s~~~-------dg~i~vw~~~~~-----~~~~~~~~--------~~~~~v~~~~~sp~~~~~~~~ 459 (490)
+... .+.|.|+|+.+. ......+. .....+..++|+|+|..+.++
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred EecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence 7652 469999999876 32123332 124578999999999977655
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=1.3e-12 Score=133.04 Aligned_cols=247 Identities=12% Similarity=0.055 Sum_probs=152.8
Q ss_pred cceeEEEEeecCCCcEEEEEeCcC-----eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..+..++|+| +|++|+.+..++ .|++||+.+++.......... ...++|+|||+
T Consensus 125 ~~~~~~~~SP--Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~----------------~~~~~wspDg~--- 183 (710)
T 2xdw_A 125 VALRGYAFSE--DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK----------------FSCMAWTHDGK--- 183 (710)
T ss_dssp EEEEEEEECT--TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC----------------SCCEEECTTSS---
T ss_pred EEEEEEEECC--CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc----------------cceEEEEeCCC---
Confidence 4578899996 677888765543 899999999987653221110 11689999999
Q ss_pred cccccCCCCccccCCCCCc----------------EEEeeeecccccccccceeeeec-cccccceeEEEecCCCCEEEE
Q 011257 188 RNFGCASNDSSFPPGGVSS----------------LRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~----------------v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~ 250 (490)
.|+.+..++. |.+|++-... . .....+. ..|...+..+.|+|||++|+.
T Consensus 184 ---------~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~----~-~~~~v~~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 184 ---------GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ----S-EDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp ---------EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG----G-GCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred ---------EEEEEEECCccccccccccccCCCCEEEEEECCCCc----c-cceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence 4444444333 8888831111 0 0011111 234455778999999999887
Q ss_pred e-c-----CCcEEEEEcCC------CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-C---CeEEEEeCCC
Q 011257 251 A-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K---GSIRLIDMRQ 314 (490)
Q Consensus 251 ~-~-----d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d---g~i~iwd~~~ 314 (490)
. . +..|++||+.. ....... +..+...+.. .|+|+| ..|+..+. + +.|.+||+.+
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTS
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCC
Confidence 5 3 56899999975 2212221 2334444444 488888 55555544 2 3699999987
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCC--eEEEEeccCCCCceeeeeeeccccccccc
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYM--TLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (490)
+... ....+..+.. ...+..++|++++.++++. .++ .|.+||+.+ ++.+..+..+...
T Consensus 321 ~~~~--~~~~l~~~~~----------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~------ 381 (710)
T 2xdw_A 321 PEES--KWKVLVPEHE----------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGS------ 381 (710)
T ss_dssp CCGG--GCEEEECCCS----------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSE------
T ss_pred CCcc--cceeccCCCC----------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCce------
Confidence 6320 0122322210 0257788998777777776 455 566677754 6666666655332
Q ss_pred cccCCCccceeeEEEcCCCCEEEEee----cCCeEEEEecCCCc
Q 011257 392 LYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGS 431 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d~~~l~s~~----~dg~i~vw~~~~~~ 431 (490)
|..++++|+++.|+... ..+.|++||+.+++
T Consensus 382 ---------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 ---------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 44788999988665332 35789999999876
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=7.9e-14 Score=141.07 Aligned_cols=160 Identities=9% Similarity=0.007 Sum_probs=101.7
Q ss_pred cceeEEEEeecCCCcEEEEEeCc----------CeEEEEEccC------CeEEEEe-eeccCCCcCCCCCCccccccccC
Q 011257 113 EKINKIRWCQSANSALYLLSTND----------KTIKLWKVQE------KKVKKVF-DWNVHPEKAAGNGPIFGSHVSAI 175 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~d----------g~i~lwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 175 (490)
..+..++|+| +|+.|++++.| ..|++||+.+ ++...+. ... ....
T Consensus 130 ~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~ 191 (662)
T 3azo_A 130 LRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAH----------------RFVT 191 (662)
T ss_dssp EEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCS----------------SEEC
T ss_pred ccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCC----------------Cccc
Confidence 5688999997 67789888877 5899999988 6544432 111 1112
Q ss_pred ceEEeccCCccccccccCCCCccccCCCC--------CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGV--------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~--------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
.++|+|||+ .|+..+.+ ..|.+||+.... ..... ..+..+|...+..++|+|||++
T Consensus 192 ~~~~SpDG~------------~la~~~~~~~~~~~~~~~i~~~d~~~~g---~~~~~-~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 192 GPRLSPDGR------------QAVWLAWDHPRMPWEGTELKTARVTEDG---RFADT-RTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp CCEECTTSS------------EEEEEEECTTCCTTTCEEEEEEEECTTS---CEEEE-EEEEEETTBCEEEEEECTTSCE
T ss_pred CceECCCCC------------EEEEEECCCCCCCCCCcEEEEEEECCCC---ccccc-EEeCCCCCceEcceEECCCCeE
Confidence 678999999 55544432 478888832011 00111 2222455678899999999997
Q ss_pred EEEe-cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCc--------eEEEEEcCCCCcEEEEEeCCCeEEEE--eCCC
Q 011257 248 FISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEV--------ITSAEFHPTHCNMLAYSSSKGSIRLI--DMRQ 314 (490)
Q Consensus 248 l~~~-~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~p~~~~~l~~~~~dg~i~iw--d~~~ 314 (490)
++++ .++ .|.+||+.+ +....+. ..+... +..++|+|++ .+++++.. +.++|| |+.+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~-~~~~~l~-------~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPAT-GAATQLC-------RREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp EEEECTTSSCEEEEECTTT-CCEEESS-------CCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTT
T ss_pred EEEECCCCCeEEEEEECCC-Cceeecc-------cccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCC
Confidence 7777 677 555555542 3232221 111111 4578899998 89999988 999999 5554
Q ss_pred cc
Q 011257 315 SA 316 (490)
Q Consensus 315 ~~ 316 (490)
++
T Consensus 326 ~~ 327 (662)
T 3azo_A 326 GE 327 (662)
T ss_dssp TE
T ss_pred Cc
Confidence 43
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=8.6e-12 Score=112.60 Aligned_cols=282 Identities=7% Similarity=-0.006 Sum_probs=179.1
Q ss_pred ccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
+...+.+++++++|+++++...++.|.+||.. +... ...+..+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~----------------------~~~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT----------------------EYPLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE----------------------EEECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE----------------------EecCCccc------------C
Confidence 34679999999999988777668899999976 3310 00011122 4
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
.+.++++.+ ++.++++...++.|..|+.. ++..... ... ....+..+++.++|.
T Consensus 58 ~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~-------------~~~~~~~i~~~~~g~--------- 111 (299)
T 2z2n_A 58 KVMCLTISS--DGEVWFTENAANKIGRITKK-GIIKEYT-LPN-------------PDSAPYGITEGPNGD--------- 111 (299)
T ss_dssp CEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEE-CSS-------------TTCCEEEEEECTTSC---------
T ss_pred ceeeEEECC--CCCEEEeCCCCCeEEEECCC-CcEEEEe-CCC-------------cCCCceeeEECCCCC---------
Confidence 578888875 56677776668899999986 3332221 110 012233678888887
Q ss_pred CCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeee
Q 011257 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 194 ~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~ 272 (490)
+.++...++.|..|+ ... . ........+...+..+++.++++++++. .++.|..||. +.. ....
T Consensus 112 ---l~v~~~~~~~i~~~d-~~g-~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~-- 176 (299)
T 2z2n_A 112 ---IWFTEMNGNRIGRIT-DDG-K------IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-ITEF-- 176 (299)
T ss_dssp ---EEEEETTTTEEEEEC-TTC-C------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-EEEE--
T ss_pred ---EEEEecCCceEEEEC-CCC-C------EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-EEEe--
Confidence 555556677888887 211 1 1111112234567899999999888877 6789999998 333 2221
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
........+..+++++++ .++++...++.|.+||. +++.. .+... .+...+.+++++++
T Consensus 177 ----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 177 ----KIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKIP----------TPNARPHAITAGAG 235 (299)
T ss_dssp ----ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECST
T ss_pred ----eCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCcEE-----EEECC----------CCCCCceeEEECCC
Confidence 122334568899999998 77777777889999998 55421 22111 01246889999999
Q ss_pred CCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 353 GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 353 g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
|+++++. .++.|..||.. +. +..+...... ..+.++++ +++++.++.. .+.|..++.+++
T Consensus 236 g~l~v~~~~~~~i~~~d~~--g~-~~~~~~~~~~-------------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTSN--NI-IEEYPIQIKS-------------AEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TCEEEEETTTTEEEEEETT--TE-EEEEECSSSS-------------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCEEEeccCCceEEEECCC--Cc-eEEEeCCCCC-------------CccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9977776 45899999983 32 3333211110 11358888 8888777655 567777887755
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=1.1e-13 Score=140.61 Aligned_cols=251 Identities=10% Similarity=0.004 Sum_probs=152.0
Q ss_pred cccccEEEEEECCCCCEEE-----EecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~la-----tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
.|...+.+++|||||++|| .|+.+..|++||+.+++... ...+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------------------~~~~~~--------- 167 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------------------VDVIEG--------- 167 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------------------SCCBSC---------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---------------------CcccCc---------
Confidence 3556799999999999999 45556789999998876210 000111
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEeCcCe-------------EEEEEccCCeEEEEeeeccCCCcCCCCCCcccccccc
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~-------------i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (490)
.....++|+| +|+.|+.++.|.. |++|++.++....
T Consensus 168 -----~~~~~~~wsp--Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------ 216 (695)
T 2bkl_A 168 -----GKYATPKWTP--DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------ 216 (695)
T ss_dssp -----CTTCCCEECT--TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------
T ss_pred -----ccccceEEec--CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------
Confidence 1125689986 6778888887765 6667665543100
Q ss_pred CceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC
Q 011257 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (490)
Q Consensus 175 ~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d 253 (490)
..++. ...+...+..+.|+|||++|+.+ .+
T Consensus 217 --------------------------------~lv~~-----------------~~~~~~~~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 217 --------------------------------TVVHE-----------------RTGDPTTFLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp --------------------------------EEEEC-----------------CCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred --------------------------------eEEEe-----------------cCCCCEEEEEEEECCCCCEEEEEEeC
Confidence 00000 12333566788999999998886 44
Q ss_pred C----cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCccccccccceec
Q 011257 254 L----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 254 ~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
+ .|.+|+... ..... +..+...+....+ +++ .+++... .++.|.+||+.+++.. ....+.
T Consensus 248 ~~~~~~l~~~~~~~-~~~~~--------l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~ 314 (695)
T 2bkl_A 248 GWSENDVYWKRPGE-KDFRL--------LVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIV 314 (695)
T ss_dssp TTTEEEEEEECTTC-SSCEE--------EEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEE
T ss_pred CCCceEEEEEcCCC-CceEE--------eecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEe
Confidence 4 566665432 22222 2234445556656 777 5444443 2588999999776420 012222
Q ss_pred cccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeee-ccccccccccccCCCccceeeE
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
.+. ....+..++|+ ++.++++. .++..+||.++..++....+..+ ... |..+
T Consensus 315 ~~~----------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~---------------v~~~ 368 (695)
T 2bkl_A 315 PED----------SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA---------------ASNL 368 (695)
T ss_dssp CCC----------SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE---------------ECCC
T ss_pred cCC----------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE---------------EEEe
Confidence 111 01457888888 66666665 46888888766335555555433 111 3467
Q ss_pred EEcCCCCEEEE----eecCCeEEEEecCCCce
Q 011257 405 CLSGDGGRVAT----GSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 405 ~~s~d~~~l~s----~~~dg~i~vw~~~~~~~ 432 (490)
+++|+++.|+. ....+.|++||+.+++.
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88999987763 23457899999998764
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=5e-13 Score=122.62 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=138.9
Q ss_pred CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC--CCccCCC
Q 011257 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK--PANMEDL 281 (490)
Q Consensus 205 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~ 281 (490)
+.|.+|| ... .+.......++-..+..++++++|+++++. .++.|++|+..........+... +..-.++
T Consensus 69 ~~i~~~d-~~~------g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~ 141 (329)
T 3fvz_A 69 DTILVID-PNN------AEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNH 141 (329)
T ss_dssp CCEEEEC-TTT------CCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTC
T ss_pred CcEEEEE-CCC------CeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccc
Confidence 5788887 111 112222223444578899999999988887 78999999986332122221100 0001234
Q ss_pred CCceEEEEEcC-CCCcEEEEEe-CCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC-CCEEEE
Q 011257 282 TEVITSAEFHP-THCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILS 358 (490)
Q Consensus 282 ~~~v~~~~~~p-~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-g~~l~s 358 (490)
...+..++++| ++ .++++.+ .++.|++||. .++.. ..+....... ....++......++++|+ +.++++
T Consensus 142 ~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v~ 213 (329)
T 3fvz_A 142 FCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCVA 213 (329)
T ss_dssp CSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS--SCCTTEESCEEEEEEETTTTEEEEE
T ss_pred cCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEEE
Confidence 55789999999 67 8888886 6999999994 44432 3332211000 000112245789999998 666666
Q ss_pred Ec-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC------CCCEEEEeecCCeEEEEecCCCc
Q 011257 359 RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 359 g~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
.. ++.|++||..+ ++.+..+....... .+..++|+| +|+..++...+..|++|++.+++
T Consensus 214 d~~~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 214 DRENGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp ETTTTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred ECCCCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 54 49999999986 77777764332111 134788888 44444444455689999999998
Q ss_pred eeeeEe---ccCCCceEEEEEccCCC
Q 011257 432 AESTTL---EASKNPMRRQVQTPSRP 454 (490)
Q Consensus 432 ~~~~~~---~~~~~~v~~~~~sp~~~ 454 (490)
. +..+ ..+......++++|+|.
T Consensus 280 ~-~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 280 I-IDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp E-EEEECCSSSCCSSEEEEEECTTSE
T ss_pred E-EEEEcCCCCccCCeeEEEECCCCC
Confidence 7 4555 36677899999999994
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=5.5e-12 Score=113.21 Aligned_cols=181 Identities=8% Similarity=0.085 Sum_probs=124.4
Q ss_pred cceeEEEe-cCCCCEEEEe-c-CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 234 YHINSISN-NSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 234 ~~v~~i~~-~~~~~~l~~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
..+..+++ .++++++++. . ++.|.+||.. .. ....+ ...+...+..++++|++ +++++...++.|.+|
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~-~~~~~------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ-FVRKF------GATILQHPRGVTVDNKG-RIIVVECKVMRVIIF 147 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC-EEEEE------CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc-EEEEe------cCccCCCceEEEEeCCC-CEEEEECCCCEEEEE
Confidence 45678888 5778777776 4 8999999943 33 33322 11234568999999999 888888889999999
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
|... +. +..+... .+...+..++++|+|+++++.. ++.|++||.. ++.+..+..+...
T Consensus 148 ~~~g-~~----~~~~~~~----------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~g~~---- 206 (286)
T 1q7f_A 148 DQNG-NV----LHKFGCS----------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE--GQYLRQIGGEGIT---- 206 (286)
T ss_dssp CTTS-CE----EEEEECT----------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT--CCEEEEESCTTTS----
T ss_pred cCCC-CE----EEEeCCC----------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC--CCEEEEEccCCcc----
Confidence 9653 22 2233211 1114578999999999877764 5999999985 5555555432110
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCC-eEEEEecCCCceeeeEeccCC--CceEEEEEccCCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSN-LFRVFGCSEGSAESTTLEASK--NPMRRQVQTPSRPS 455 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~ 455 (490)
.....++++++|+++++...++ .|++|+.. ++. +..+..+. ..+.+++++|+|..
T Consensus 207 ---------~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 207 ---------NYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL-ISALESKVKHAQCFDVALMDDGSV 264 (286)
T ss_dssp ---------CSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE-EEEEEESSCCSCEEEEEEETTTEE
T ss_pred ---------CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCE-EEEEcccCCCCcceeEEECCCCcE
Confidence 0134899999999988888776 99999965 444 34554443 34779999998863
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=3.7e-13 Score=126.97 Aligned_cols=262 Identities=11% Similarity=0.028 Sum_probs=155.4
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 40 ~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
.+.|||||++||+++.++.|.+||+.+++.. .....+. .
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-----------------------~~~~~~~------------~------ 123 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQ-----------------------VIYTVDE------------E------ 123 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEE-----------------------EEEECCT------------T------
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcE-----------------------EEEeccc------------c------
Confidence 3789999999999998989999998765511 1111122 1
Q ss_pred EeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccc
Q 011257 120 WCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (490)
Q Consensus 120 ~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~ 199 (490)
|+| ++..++....++...+|.. ...|+|+++ .++
T Consensus 124 ~~~--~g~~l~~~~~~~~~~~~~~--------------------------------~~~~spdg~------------~~~ 157 (396)
T 3c5m_A 124 WKG--YGTWVANSDCTKLVGIEIL--------------------------------KRDWQPLTS------------WEK 157 (396)
T ss_dssp EEE--EEEEEECTTSSEEEEEEEE--------------------------------GGGCCCCCS------------HHH
T ss_pred cCC--CCCEEEeccCCcccccccc--------------------------------ccccCCCCc------------cee
Confidence 443 3456666665555554431 235678887 444
Q ss_pred cC-----CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cC------CcEEEEEcCCCCc
Q 011257 200 PP-----GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DD------LRINLWNLEISNQ 266 (490)
Q Consensus 200 ~~-----~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d------~~i~~wd~~~~~~ 266 (490)
.. ..+..|.+||+ .. .+.... ..+...+..+.|+| +++.|+.. .+ ..|.+||+....
T Consensus 158 ~~~~~~~~~~~~l~~~d~-~~------g~~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~- 227 (396)
T 3c5m_A 158 FAEFYHTNPTCRLIKVDI-ET------GELEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN- 227 (396)
T ss_dssp HHHHHHTCCCEEEEEEET-TT------CCEEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-
T ss_pred eeeeccCCCcceEEEEEC-CC------CcEEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-
Confidence 32 46677888882 21 111111 23456788899999 78877665 32 468888886332
Q ss_pred eeeeeecCCCccCCC--CCceEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 267 SFNIVDVKPANMEDL--TEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
... +..+ ...+..++|+|+| +.|+.++.+ +.|++||+.+++.. .+...
T Consensus 228 ~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~-----~l~~~----------- 282 (396)
T 3c5m_A 228 VRK--------IKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE-----EVMVM----------- 282 (396)
T ss_dssp CEE--------SSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE-----EEEEC-----------
T ss_pred eeE--------eeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE-----EeeeC-----------
Confidence 221 1222 3357889999999 766666543 45999999887531 22111
Q ss_pred cccceEEEEECC-CCCEEEEEc-----------------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccce
Q 011257 340 IIASISDIKFAR-NGRHILSRD-----------------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 340 h~~~i~~l~~sp-~g~~l~sg~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
.... +.|+| ||++++++. +..|.+||+.. ++ +..+..+...... +..+....+
T Consensus 283 --~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~~~~~----~~~~~~~~~ 353 (396)
T 3c5m_A 283 --PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KS-AQKLCKHSTSWDV----LDGDRQITH 353 (396)
T ss_dssp --CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TB-CCEEEECCCCCCC----BTTBSSTTC
T ss_pred --CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cc-eEEccCCCCcccc----ccccccCCC
Confidence 1122 88999 999888642 37899999985 44 3344443321000 000000002
Q ss_pred eeEEEcCCCCEEEEeec-CCe--EEEEecCCCce
Q 011257 402 FECCLSGDGGRVATGSY-SNL--FRVFGCSEGSA 432 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~-dg~--i~vw~~~~~~~ 432 (490)
..++|+|||+.|+.++. ++. |.++++.+++.
T Consensus 354 ~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 354 PHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp CCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred CCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 36789999999887764 454 44555555544
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=4.2e-12 Score=116.74 Aligned_cols=246 Identities=9% Similarity=0.111 Sum_probs=150.9
Q ss_pred cccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
.+...+.+++|+++|++++++..++.|.+||..+++.. .....+.
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-----------------------~~~~~~~------------ 86 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----------------------RPFVSHK------------ 86 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----------------------EEEECSS------------
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-----------------------EEeeCCC------------
Confidence 34566799999999998888888999999998765521 1111233
Q ss_pred cceeEEEEeecCCCcEEEEEeCc----CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..+.+++|.| ++.++++...+ +.|.+||..++........
T Consensus 87 ~~~~~i~~~~--dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------------------- 130 (333)
T 2dg1_A 87 ANPAAIKIHK--DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED---------------------------------- 130 (333)
T ss_dssp SSEEEEEECT--TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS----------------------------------
T ss_pred CCcceEEECC--CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc----------------------------------
Confidence 5589999985 56677766665 6888888877653321100
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEec-------CCcEEEEEc
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD-------DLRINLWNL 261 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------d~~i~~wd~ 261 (490)
..+...+.+++++|+|+++++.. .+.|..++.
T Consensus 131 -----------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 131 -----------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp -----------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred -----------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeC
Confidence 00113567888999998877763 244555554
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCC-ccccccccceeccccCCCccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
.. .....+ ......+..++|+|++ + ++++.+.++.|.+||+.+ +... ..+.... ...+.+
T Consensus 170 ~~-~~~~~~--------~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~~~----~~~~~~ 231 (333)
T 2dg1_A 170 DF-RTVTPI--------IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGATI----PYYFTG 231 (333)
T ss_dssp TS-CCEEEE--------EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEE----EEECCS
T ss_pred CC-CEEEEe--------ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccceE----EEecCC
Confidence 42 222211 1123357889999998 6 445556688999999864 2211 1110000 000001
Q ss_pred cccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeec
Q 011257 340 IIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 418 (490)
+ ..+..++++++|+++++. .++.|.+||.+ ++.+..+..+.... .....+.+++|+||++.|+.++.
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~---------g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDE---------GHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGG---------TCSCBCCEEEECTTSCEEEEEEE
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCcc---------ccccCcceEEECCCCCEEEEEeC
Confidence 1 356789999999988776 45899999984 66666664332100 00001348999999877766665
Q ss_pred CC
Q 011257 419 SN 420 (490)
Q Consensus 419 dg 420 (490)
++
T Consensus 300 ~g 301 (333)
T 2dg1_A 300 DI 301 (333)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=2.9e-12 Score=113.95 Aligned_cols=240 Identities=8% Similarity=0.025 Sum_probs=155.1
Q ss_pred cEEEEEECCCCCEEE-EecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 37 ~V~~~~~s~dg~~la-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
...+++++++|++++ +...++.|.+|+..+.... .....+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------------VLPFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----------------------ECCCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----------------------eEeeCCc------------CCc
Confidence 788999999999777 5467889999987544310 0001111 336
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
.++++.| ++.++++.. ++.|.+||..+...... .
T Consensus 70 ~~i~~~~--~g~l~v~~~-~~~i~~~d~~~~~~~~~---~---------------------------------------- 103 (270)
T 1rwi_B 70 QGLAVDG--AGTVYVTDF-NNRVVTLAAGSNNQTVL---P---------------------------------------- 103 (270)
T ss_dssp CCEEECT--TCCEEEEET-TTEEEEECTTCSCCEEC---C----------------------------------------
T ss_pred ceeEECC--CCCEEEEcC-CCEEEEEeCCCceEeee---e----------------------------------------
Confidence 6788875 555555555 88899998765432110 0
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
......+..++++++++++++. .++.|.+|+.........
T Consensus 104 ----------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----- 144 (270)
T 1rwi_B 104 ----------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----- 144 (270)
T ss_dssp ----------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----
T ss_pred ----------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----
Confidence 0011345788999999877776 688899997653322211
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~ 354 (490)
.......+.+++++|++ +++++...++.|.+||....... ...... ...+..++++++|.
T Consensus 145 ---~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~------------~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 145 ---PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV----VLPFTD------------ITAPWGIAVDEAGT 204 (270)
T ss_dssp ---CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEE----ECCCSS------------CCSEEEEEECTTCC
T ss_pred ---ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceE----eecccC------------CCCceEEEECCCCC
Confidence 11223457789999999 78887777899999998765421 110111 14578999999997
Q ss_pred EEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 355 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 355 ~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
++++.. ++.|.+||... ... ....... ...+..++++++|+++++...++.|+++++...+.
T Consensus 205 l~v~~~~~~~v~~~~~~~-~~~-~~~~~~~--------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGS-TTS-TVLPFTG--------------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEEETTTSCEEEECTTC-SCC-EECCCCS--------------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEEEECCCCcEEEEcCCC-Ccc-eeeccCC--------------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 777764 58999999874 322 2211110 01134899999999888888999999999986543
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=5.1e-12 Score=115.71 Aligned_cols=253 Identities=7% Similarity=-0.037 Sum_probs=155.7
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
...+.+. ++..+++...++.|.+||..+++........ ..|..++++++++
T Consensus 46 ~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~----------------~~p~~i~~~~~g~---------- 96 (328)
T 3dsm_A 46 AQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGF----------------TSPRYIHFLSDEK---------- 96 (328)
T ss_dssp EEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------------SSEEEEEEEETTE----------
T ss_pred ceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------------CCCcEEEEeCCCe----------
Confidence 5667774 3456666777899999999998876544311 2233788888886
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeecccc----ccceeEEEecCCCCEEEEe-c-CCcEEEEEcCCCCcee
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH----DYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSF 268 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~~ 268 (490)
..++...++.|.+|| ... .+....+..+. ......+++ .+++++++. . ++.|.++|..+.. ..
T Consensus 97 --lyv~~~~~~~v~~iD-~~t------~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~-~~ 165 (328)
T 3dsm_A 97 --AYVTQIWDYRIFIIN-PKT------YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK-VV 165 (328)
T ss_dssp --EEEEEBSCSEEEEEE-TTT------TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE-EE
T ss_pred --EEEEECCCCeEEEEE-CCC------CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe-EE
Confidence 444444789999998 221 11111111111 114456777 445555554 3 8899999998543 33
Q ss_pred eeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC----------CeEEEEeCCCccccccccceeccccCCCcccccc
Q 011257 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (490)
..+. . ......++++|+| ++++++..+ +.|.++|..+++.. ..+....
T Consensus 166 ~~i~-----~---g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~--------- 223 (328)
T 3dsm_A 166 DELT-----I---GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL--------- 223 (328)
T ss_dssp EEEE-----C---SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT---------
T ss_pred EEEE-----c---CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC---------
Confidence 3321 1 2234678899999 777766554 78999999887642 2332211
Q ss_pred ccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC-CCCEEEEe-
Q 011257 339 EIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG- 416 (490)
Q Consensus 339 ~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~- 416 (490)
......++|+|+++.|++++. .|.+||..+ ++........... .....++++| ++++.++.
T Consensus 224 --g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~-------------~~p~gi~vdp~~g~lyva~~ 286 (328)
T 3dsm_A 224 --GDWPSEVQLNGTRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFRD-------------TKYYGLTVNPNNGEVYVADA 286 (328)
T ss_dssp --TCCCEEEEECTTSCEEEEESS-SEEEEETTC-SSCCSSCSBCCCS-------------SCEEEEEECTTTCCEEEEEC
T ss_pred --CCCceeEEEecCCCEEEEEcc-EEEEEECCC-CceeeeeeecCCC-------------CceEEEEEcCCCCeEEEEcc
Confidence 024789999999999988755 899999986 4432111000000 0024899999 56666665
Q ss_pred ---ecCCeEEEEecCCCceeeeEeccCCCceEEEEE
Q 011257 417 ---SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 417 ---~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 449 (490)
..++.|.+||.. |+. +..+..- .....++|
T Consensus 287 ~~y~~~~~V~v~d~~-g~~-~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 287 IDYQQQGIVYRYSPQ-GKL-IDEFYVG-IIPGAFCW 319 (328)
T ss_dssp TTSSSEEEEEEECTT-CCE-EEEEEEE-ESEEEEEE
T ss_pred cccccCCEEEEECCC-CCE-EEEEEec-cCcceEEE
Confidence 568899999998 766 4555432 22344444
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=1.2e-10 Score=104.92 Aligned_cols=265 Identities=7% Similarity=-0.010 Sum_probs=170.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+.++++.| +|..+++...++.|.+||.. ++...... ... ...+..+++.++|.
T Consensus 15 ~~~~~i~~d~--~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~~-------------~~~~~~i~~~~~g~-------- 69 (299)
T 2z2n_A 15 TGPYGITVSD--KGKVWITQHKANMISCINLD-GKITEYPL-PTP-------------DAKVMCLTISSDGE-------- 69 (299)
T ss_dssp CCEEEEEECT--TSCEEEEETTTTEEEEECTT-CCEEEEEC-SST-------------TCCEEEEEECTTSC--------
T ss_pred CCccceEECC--CCCEEEEecCCCcEEEEcCC-CCeEEecC-Ccc-------------cCceeeEEECCCCC--------
Confidence 4588899875 56666666668899999988 65443321 100 02233678888887
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+.++...++.|..|+ .. .. ............+..+++.+++.++++. .++.|..||.. .... ..
T Consensus 70 ----l~v~~~~~~~i~~~~-~~---g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~- 134 (299)
T 2z2n_A 70 ----VWFTENAANKIGRIT-KK---GI----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKIR-EY- 134 (299)
T ss_dssp ----EEEEETTTTEEEEEC-TT---SC----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EE-
T ss_pred ----EEEeCCCCCeEEEEC-CC---Cc----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCEE-Ee-
Confidence 555556677888887 21 11 1111112234567899999999888887 68899999983 3322 11
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
........+..+++.+++ +++++...++.|..||. +++.. .+.... ....+..+++++
T Consensus 135 -----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~----------~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 -----ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKIPT----------PASGPVGITKGN 192 (299)
T ss_dssp -----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEECSS----------TTCCEEEEEECT
T ss_pred -----cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeCCC----------CCCcceeEEECC
Confidence 122334568999999998 78887777889999998 55432 221110 114578999999
Q ss_pred CCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+|+++++.. ++.|.+||. + +... .+..... ...+..++++++|+++++...++.|..||. ++
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~-g~~~-~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g 255 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-S-GEIT-EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTS-NN 255 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-T-CCEE-EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEET-TT
T ss_pred CCCEEEEccCCceEEEECC-C-CcEE-EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECC-CC
Confidence 999777764 589999998 4 4432 2211110 011458999999997777667889999998 45
Q ss_pred ceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 431 SAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
+.....+..+...+.++++ +++....
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v 281 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWF 281 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEE
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEE
Confidence 4322223444567889999 7776433
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=1e-11 Score=112.11 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=118.7
Q ss_pred cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEE----e------
Q 011257 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS----S------ 302 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~----~------ 302 (490)
..+.+++++++|+++++. .++.|.+||..+.. ...+... ........+..++++|+| +++++. +
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~~~~~~~---~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~ 143 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-WESIADS---FEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEG 143 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-EEEEECE---ETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGS
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-EEEEeec---cCCCCCCCCCCEEECCCC-CEEEECCcccccccccc
Confidence 446789999999988777 67899999986443 2222110 001112346789999999 888873 2
Q ss_pred -------CCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCC
Q 011257 303 -------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG 374 (490)
Q Consensus 303 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~ 374 (490)
..+.|..+|.. ++. ..+... ......++|+|+|+.+++.. ++.|.+|++...+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~-g~~-----~~~~~~------------~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~ 205 (296)
T 3e5z_A 144 YGGEMELPGRWVFRLAPD-GTL-----SAPIRD------------RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGE 205 (296)
T ss_dssp SCCCCCSSSCEEEEECTT-SCE-----EEEECC------------CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSC
T ss_pred ccccccCCCcEEEEECCC-CCE-----EEeecC------------CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCc
Confidence 13456666554 321 222222 14568899999999986654 48999999973244
Q ss_pred c---eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEE-c
Q 011257 375 P---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ-T 450 (490)
Q Consensus 375 ~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~-s 450 (490)
. ...+..+... +..++++++|+++++. ++.|.+|+.+ ++. +..+..+.. +.+++| +
T Consensus 206 ~~~~~~~~~~~~~~---------------p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~-~~~~~~~~~-~~~~~f~~ 265 (296)
T 3e5z_A 206 TEYQGVHFTVEPGK---------------TDGLRVDAGGLIWASA--GDGVHVLTPD-GDE-LGRVLTPQT-TSNLCFGG 265 (296)
T ss_dssp EEEEEEEECCSSSC---------------CCSEEEBTTSCEEEEE--TTEEEEECTT-SCE-EEEEECSSC-CCEEEEES
T ss_pred CcCCCeEeeCCCCC---------------CCeEEECCCCCEEEEc--CCeEEEECCC-CCE-EEEEECCCC-ceeEEEEC
Confidence 3 1222111111 2378999999977766 7899999987 555 566777766 999999 5
Q ss_pred cCCCCCCCCc
Q 011257 451 PSRPSRPLGS 460 (490)
Q Consensus 451 p~~~~~~~~~ 460 (490)
|++.....++
T Consensus 266 ~d~~~L~v~t 275 (296)
T 3e5z_A 266 PEGRTLYMTV 275 (296)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEc
Confidence 7776555444
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.49 E-value=3.6e-12 Score=117.88 Aligned_cols=237 Identities=11% Similarity=0.075 Sum_probs=143.2
Q ss_pred ceeEEEEeecCCCcEEEEEe---------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 114 KINKIRWCQSANSALYLLST---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~---------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
.+..+++ +|..++... .++.|.+||+.+++...+ . . ...++|+|||+
T Consensus 16 ~~~~~~~----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~-~------------------~~~~~~SpDg~ 71 (347)
T 2gop_A 16 YLSDPRT----KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-E-N------------------ATMPRISPDGK 71 (347)
T ss_dssp EEEEEEE----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-E-S------------------CEEEEECTTSS
T ss_pred EcccceE----CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-c-c------------------CCCeEECCCCC
Confidence 3556666 455665532 267899999998876544 1 0 11679999999
Q ss_pred ccccccccCCCCccccCCCC---Cc--EEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC-----
Q 011257 185 CGERNFGCASNDSSFPPGGV---SS--LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----- 253 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~---g~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----- 253 (490)
.|+..+.+ +. |.+|+ +. . .+..+.. .. .. +..++|+|+|+.|+.+ .+
T Consensus 72 ------------~la~~~~~~~~~~~~l~~~~-~~---~---g~~~~l~-~~-~~-~~~~~wspdg~~l~~~~~~~~~~~ 129 (347)
T 2gop_A 72 ------------KIAFMRANEEKKVSEIWVAD-LE---T---LSSKKIL-EA-KN-IRSLEWNEDSRKLLIVGFKRREDE 129 (347)
T ss_dssp ------------EEEEEEEETTTTEEEEEEEE-TT---T---TEEEEEE-EE-SE-EEEEEECTTSSEEEEEEECCCC--
T ss_pred ------------EEEEEEeccCCCcceEEEEE-CC---C---CceEEEE-cC-CC-ccceeECCCCCEEEEEEccCCCcC
Confidence 45544332 34 55555 11 1 1122221 22 23 8899999999988886 32
Q ss_pred ----------------------CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC------
Q 011257 254 ----------------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG------ 305 (490)
Q Consensus 254 ----------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------ 305 (490)
..|++||+.++ .....+ .. . .+..++|+|+| +++++..++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-~~~~~l-------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~ 197 (347)
T 2gop_A 130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-EVIEEF-------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYF 197 (347)
T ss_dssp -------CCCC---------CEEEEEEEETTTT-EEEEEE-------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSS
T ss_pred CcEEEcccceeecCcccccCccceEEEEECCCC-eEEeee-------cC-C-CcccccCCCCe--EEEEEeccccccccc
Confidence 56888998743 331221 11 2 67789999998 666665442
Q ss_pred -eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C--------CeEEEEeccCCCCc
Q 011257 306 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKLWDINMDSGP 375 (490)
Q Consensus 306 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d--------~~i~iwd~~~~~~~ 375 (490)
...+|.+.+++. ..+.. + ..+..+ +|||++|+..+ + ..|.+|| . ++.
T Consensus 198 ~~~~l~~~d~~~~-----~~l~~------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~ 254 (347)
T 2gop_A 198 KFWDIYIWEDGKE-----EKMFE------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEV 254 (347)
T ss_dssp CCEEEEEEETTEE-----EEEEE------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCE
T ss_pred ccccEEEeCCCce-----EEecc------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-Cce
Confidence 334444334331 22211 1 233443 89999887653 2 3677777 3 444
Q ss_pred eeeeeeeccccccccccccCCCccceee-EEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 376 VATFQVHEHLRPKLCDLYENDSIFDKFE-CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
......+... +.. +.|+ |+ ++++++.++.++|| +.+++. ..+..+...|.+++|+|
T Consensus 255 ~~l~~~~~~~---------------~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~--~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 255 MGILDEVDRG---------------VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI--KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EESSTTCCSE---------------EEEEEEET-TE-EEEEEEETTEEEEE-EESSSE--EEEECSSSEEEEEEESS
T ss_pred EeccccCCcc---------------cCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce--EEEecCCCeEEeeeeeC
Confidence 3333322222 334 8899 88 99999999999999 886654 34444577899999999
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.49 E-value=8.5e-12 Score=126.98 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=144.3
Q ss_pred ceEEeccCCccccccccCCCCccccCCC-----CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGG-----VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~-----~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
.++|||||+ +|+.+.. ...|++||+ ...+ ....... ...+..++|+|||+.|+.
T Consensus 129 ~~~~SPDg~------------~la~~~~~~G~~~~~i~v~d~-~tg~------~~~~~~~--~~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 129 GYAFSEDGE------------YFAYGLSASGSDWVTIKFMKV-DGAK------ELPDVLE--RVKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp EEEECTTSS------------EEEEEEEETTCSCEEEEEEET-TTTE------EEEEEEE--EECSCCEEECTTSSEEEE
T ss_pred EEEECCCCC------------EEEEEEcCCCCceEEEEEEEC-CCCC------CCccccc--CcccceEEEEeCCCEEEE
Confidence 679999999 5553322 238999992 2211 1111111 123567999999999988
Q ss_pred e-cCCc----------------EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-----CCeEE
Q 011257 251 A-DDLR----------------INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIR 308 (490)
Q Consensus 251 ~-~d~~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~ 308 (490)
+ .++. |++|++.+....-.++ .....+...+..+.|+|+| ++|+..+. +..|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v----~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC----AEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLW 262 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE----ECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEE
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEE----eccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEE
Confidence 7 5544 9999998544221111 0123355667899999999 77776654 56899
Q ss_pred EEeCCC------ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cC----CeEEEEeccCCCC--c
Q 011257 309 LIDMRQ------SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY----MTLKLWDINMDSG--P 375 (490)
Q Consensus 309 iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d----~~i~iwd~~~~~~--~ 375 (490)
+||+.+ +... ...+..+. ..+.. .|+|+|+.|+.. .. +.|.+||+.. +. .
T Consensus 263 ~~d~~~~~~~~~~~~~---~~~l~~~~------------~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~ 325 (710)
T 2xdw_A 263 YCDLQQESNGITGILK---WVKLIDNF------------EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-PEESK 325 (710)
T ss_dssp EEEGGGSSSSSCSSCC---CEEEECSS------------SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-CCGGG
T ss_pred EEECcccccccCCccc---eEEeeCCC------------CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-CCccc
Confidence 999876 3211 23333332 33333 488999887764 21 5799999985 43 2
Q ss_pred eeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCe--EEEEecCCCceeeeEeccCCCceEEEEEccCC
Q 011257 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 453 (490)
...+..+.... .+..++|++++.++++...|+. |++|++.+|+. +..+..+...+..+.++|++
T Consensus 326 ~~~l~~~~~~~-------------~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~-~~~l~~~~~~v~~~~~s~d~ 391 (710)
T 2xdw_A 326 WKVLVPEHEKD-------------VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKD 391 (710)
T ss_dssp CEEEECCCSSC-------------EEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTC
T ss_pred ceeccCCCCCC-------------eEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE-EEecCCCCceEEEEecCCCC
Confidence 34444443210 0347889888888888888885 56677767765 46677777888999999988
Q ss_pred CCCCC
Q 011257 454 PSRPL 458 (490)
Q Consensus 454 ~~~~~ 458 (490)
.....
T Consensus 392 ~~l~~ 396 (710)
T 2xdw_A 392 TEIFY 396 (710)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 65543
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=7.5e-11 Score=107.96 Aligned_cols=314 Identities=9% Similarity=0.009 Sum_probs=181.3
Q ss_pred EEEECCCCCEEEEecC-----CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 40 AIEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 40 ~~~~s~dg~~latg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
.....|+++.+++... ++.|.+.|..+.+. +..+..-. .+
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-----------------------~~~I~vG~------------~P 81 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------LP 81 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------SC
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-----------------------EEEEECCC------------CC
Confidence 3556789998887765 67999999887662 22222211 22
Q ss_pred eeEEEEeecCCCcEEEEEe----------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 115 INKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
. ++++| ++++++++. .++.|.+||..+.+........... .......|..++++|||+
T Consensus 82 -~-va~sp--DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~--------r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 82 -N-PVVAD--DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP--------RFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp -E-EEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--------CCCBSCCGGGEEECTTSS
T ss_pred -c-EEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc--------ccccCCCCceEEEcCCCC
Confidence 3 88886 666777664 4678999999999877665543200 000012344899999999
Q ss_pred ccccccccCCCCccccCC--CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEc
Q 011257 185 CGERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 261 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~--~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~ 261 (490)
+++++. .++.|.++|+ ... +....+.. ... ...+....+.+++. .||.+.+.++
T Consensus 150 ------------~lyVan~~~~~~VsVID~-~t~------~vv~tI~v---~g~-~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 150 ------------TLLFYQFSPAPAVGVVDL-EGK------AFKRMLDV---PDC-YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp ------------EEEEEECSSSCEEEEEET-TTT------EEEEEEEC---CSE-EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ------------EEEEEEcCCCCeEEEEEC-CCC------cEEEEEEC---CCc-ceeecCCCceeEEECCCCCEEEEEC
Confidence 555554 3689999982 211 11111100 000 11122223334333 6777777777
Q ss_pred CCCCceeeeeecCCCccCCCCCceE-EEEEc-CCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccc-cc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF-FT 338 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 338 (490)
...+...... .+ .+.....++. ...|. ++| +++ ..+.+|++.+.|+.+..... ...+..... ... ..
T Consensus 207 ~~~g~v~~~~-~~--~~~~~~~~~~~~~~~~~~dG-~~~-~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~---~~~~~g 276 (386)
T 3sjl_D 207 GTEGTPEITH-TE--VFHPEDEFLINHPAYSQKAG-RLV-WPTYTGKIHQIDLSSGDAKF--LPAVEALTE---AERADG 276 (386)
T ss_dssp CSSSCCEEEE-CC--CCSCTTSCBCSCCEEETTTT-EEE-EEBTTSEEEEEECTTSSCEE--CCCEESSCH---HHHHTT
T ss_pred CCCCeEEEee-cc--eeccccccccccceeEcCCC-cEE-EEeCCCEEEEEECCCCccee--ecceecccc---cccccc
Confidence 6433321111 00 1111112221 23554 676 444 46678999999997654210 111110000 000 00
Q ss_pred ccccceEEEEECCCCCEEEEEc-----------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 339 EIIASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 339 ~h~~~i~~l~~sp~g~~l~sg~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
-.......++++|+++.++... .++|.+.|+.+ .+.+..+..... ++.++++
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~----------------~~~lavs 339 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHE----------------IDSINVS 339 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEE----------------ECEEEEC
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCC----------------cceEEEC
Confidence 0112344577899888877642 15799999998 888888876543 2489999
Q ss_pred CCCC-EEEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEEccC
Q 011257 408 GDGG-RVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (490)
Q Consensus 408 ~d~~-~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~ 452 (490)
+|++ +|+++. .++.|.++|..+++. +..+... ..-..+.+++|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k~-~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCCE-EEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCcE-EEEecCC-CCCceeEECCc
Confidence 9997 666654 589999999999987 5666543 34566777877
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=2.1e-10 Score=103.51 Aligned_cols=279 Identities=8% Similarity=-0.014 Sum_probs=175.4
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
...+.+++++++|++.++...++.|.+||.. ++.. ...+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~----------------------~~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK----------------------EFEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE----------------------EEECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE----------------------EEECCCCC------------Cc
Confidence 4578999999999988877778899999976 3310 00011111 44
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
+..+++.+ ++.++++...++.|..||.. ++.... ..... ...+..+++.++|.
T Consensus 64 ~~~i~~~~--~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~~~~-------------~~~~~~i~~~~~g~---------- 116 (300)
T 2qc5_A 64 VMCLIVSS--LGDIWFTENGANKIGKLSKK-GGFTEY-PLPQP-------------DSGPYGITEGLNGD---------- 116 (300)
T ss_dssp EEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEE-ECSST-------------TCCEEEEEECSTTC----------
T ss_pred ceeEEECC--CCCEEEEecCCCeEEEECCC-CCeEEe-cCCCC-------------CCCCccceECCCCC----------
Confidence 77888874 56666666667899999988 554322 11100 02233677888887
Q ss_pred CCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 195 ~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
+.++...++.|..++ . +. .............+..+++.++++++++. .++.|..++.. .. ....
T Consensus 117 --l~v~~~~~~~i~~~~-~---~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-~~~~--- 181 (300)
T 2qc5_A 117 --IWFTQLNGDRIGKLT-A---DG----TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GK-LEEY--- 181 (300)
T ss_dssp --EEEEETTTTEEEEEC-T---TS----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC-EEEE---
T ss_pred --EEEEccCCCeEEEEC-C---CC----CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-Cc-EEEe---
Confidence 555555577788776 1 11 11111112233567899999999977776 57889999883 33 2221
Q ss_pred CCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 274 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
........+..+++.+++ .++++....+.|.+||. +++.. .+... .+...+.+++++++|
T Consensus 182 ---~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 182 ---PLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDIP----------TPNARPHAITAGKNS 241 (300)
T ss_dssp ---ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECSTT
T ss_pred ---eCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEECC----------CCCCCceEEEECCCC
Confidence 123344568899999998 77777777888999998 44321 11111 011457899999999
Q ss_pred CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC
Q 011257 354 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 354 ~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~ 428 (490)
++.++.. ++.|..||.. +.. ..+...... ..+.+++++++|++.++.. . .|..++.+
T Consensus 242 ~l~v~~~~~~~i~~~~~~--g~~-~~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITND--NTI-QEYQLQTEN-------------AEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CEEEEETTTTEEEEECTT--SCE-EEEECCSTT-------------CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CEEEeccCCCeEEEECCC--CcE-EEEECCccC-------------CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 9777764 4899999984 432 222211110 0134899999999777655 4 67776653
No 194
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=1.4e-11 Score=125.84 Aligned_cols=245 Identities=11% Similarity=0.009 Sum_probs=142.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCc-----CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccc
Q 011257 113 EKINKIRWCQSANSALYLLSTND-----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~ 187 (490)
..+..++|+| ||++|+.+..+ .+|++||+.+++......... ....++|+|| +
T Consensus 163 ~~~~~~~~SP--DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~----------------~~~~~~wspD-~--- 220 (741)
T 1yr2_A 163 TALDAWAASD--DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV----------------KFSGLAWLGN-D--- 220 (741)
T ss_dssp EEEEEEEECT--TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE----------------ESCCCEESTT-S---
T ss_pred EEEEeEEECC--CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc----------------eeccEEEECC-C---
Confidence 3588899996 67788876544 469999999998654311110 0016789999 7
Q ss_pred cccccCCCCccccCCCCC--------------cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c
Q 011257 188 RNFGCASNDSSFPPGGVS--------------SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g--------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~ 252 (490)
.|+.+..++ .|.+|++-.... ....... ...+...+..+.|+|||++|+.. .
T Consensus 221 ---------~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~---~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 221 ---------ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS---ADQPVFA-TPELPKRGHGASVSSDGRWVVITSS 287 (741)
T ss_dssp ---------EEEEEECCCC--------CCCCCEEEEEETTSCGG---GCEEEEC-CTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ---------EEEEEEecCcccccccccCCCCCEEEEEECCCCch---hCEEEec-cCCCCeEEEEEEECCCCCEEEEEEE
Confidence 344333322 377777211110 0011111 12233357889999999998876 4
Q ss_pred C-----CcEEEEEcCCCCce-eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCcc-ccccc
Q 011257 253 D-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRLIDMRQSA-LCDTH 321 (490)
Q Consensus 253 d-----~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~ 321 (490)
+ ..|++||+.+.... ... +..+...+.... +|++ ..|+..+. ++.|.+||+.++. .
T Consensus 288 ~~~~~~~~l~~~d~~~~~~~~~~~-------l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~---- 354 (741)
T 1yr2_A 288 EGTDPVNTVHVARVTNGKIGPVTA-------LIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPR---- 354 (741)
T ss_dssp CTTCSCCEEEEEEEETTEECCCEE-------EECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCE----
T ss_pred ccCCCcceEEEEECCCCCCcccEE-------ecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccc----
Confidence 3 37999998754211 221 222333344443 4888 66666665 4569999987742 1
Q ss_pred cceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeee-ccccccccccccCCCcc
Q 011257 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIF 399 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 399 (490)
...+..+. ...+..++|+ ++.++++. .++..+||.++..++....+..+ ...
T Consensus 355 ~~~l~~~~-----------~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~-------------- 408 (741)
T 1yr2_A 355 FDTVVPES-----------KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS-------------- 408 (741)
T ss_dssp EEEEECCC-----------SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE--------------
T ss_pred cEEEecCC-----------CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE--------------
Confidence 12222111 1346677777 45555665 46777777665325555555432 111
Q ss_pred ceeeEEEcCCCCEEEE----eecCCeEEEEecCCCce
Q 011257 400 DKFECCLSGDGGRVAT----GSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 400 ~v~~~~~s~d~~~l~s----~~~dg~i~vw~~~~~~~ 432 (490)
|..++++|+++.|+. ....+.|++||+.+++.
T Consensus 409 -v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 409 -ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 447889999886652 22457899999988763
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.46 E-value=8e-11 Score=104.52 Aligned_cols=225 Identities=10% Similarity=0.053 Sum_probs=150.2
Q ss_pred CCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCC
Q 011257 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (490)
Q Consensus 125 ~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~ 204 (490)
+++.|++++.|+.|.+||.++++.......... ..+..++++|+|+ +++ +.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~--------------~~~~~~~~~pdG~------------ilv--s~~ 55 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG--------------WECNSVAATKAGE------------ILF--SYS 55 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT--------------CCCCEEEECTTSC------------EEE--ECB
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc--------------CCCcCeEECCCCC------------EEE--eCC
Confidence 467899999999999999989988766554320 1122678899998 555 346
Q ss_pred CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c-CCcEEEEEcCCCCceeeeeecCCCccCCCC
Q 011257 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (490)
Q Consensus 205 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 282 (490)
+.|..|| .+ ++.+..+..+....+.++.+.++|+++++. . ++.+..+|.. + +....+.... ....+.
T Consensus 56 ~~V~~~d----~~----G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~-~~~~~~ 124 (276)
T 3no2_A 56 KGAKMIT----RD----GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G-EVLSKTEFET-GIERPH 124 (276)
T ss_dssp SEEEEEC----TT----SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S-CEEEEEEECC-SCSSGG
T ss_pred CCEEEEC----CC----CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccC-CCCccc
Confidence 6788877 11 222222322223467788999999999987 5 6777777753 3 3333222211 111222
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC-
Q 011257 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 361 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d- 361 (490)
.....+++.++| +++++...++.|..||.. ++.. ..+... ....++.+.++|++++++.+
T Consensus 125 ~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~~----w~~~~~-------------~~~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 125 AQFRQINKNKKG-NYLVPLFATSEVREIAPN-GQLL----NSVKLS-------------GTPFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp GSCSCCEECTTS-CEEEEETTTTEEEEECTT-SCEE----EEEECS-------------SCCCEEEECTTSCEEEECBTT
T ss_pred ccccCceECCCC-CEEEEecCCCEEEEECCC-CCEE----EEEECC-------------CCccceeEcCCCCEEEEeCCC
Confidence 345566789999 899999999999999988 7653 344332 23456778899999998765
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 417 (490)
+.|..+|..+ ++.+..+....... ..+..+..++..++|+++++..
T Consensus 186 ~~v~~~d~~t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 186 HCFVQLNLES-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SEEEEECTTT-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEE
T ss_pred CeEEEEeCcC-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEec
Confidence 7899999987 88888776432110 0122245788899999888763
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.46 E-value=9.1e-12 Score=126.42 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=139.9
Q ss_pred ceEEeccCCccccccccCCCCccc-----cCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 176 PKSYMANGGCGERNFGCASNDSSF-----PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~-----~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
.++|||||+ +|+ .|+.+..|++||+ ...+... ...... .....++|+|||+.|+.
T Consensus 125 ~~~~SPDG~------------~la~~~~~~G~~~~~i~v~dl-~tg~~~~-----~~~~~~--~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 125 TWAVSWDGK------------KVAFAQKPNAADEAVLHVIDV-DSGEWSK-----VDVIEG--GKYATPKWTPDSKGFYY 184 (695)
T ss_dssp EEEECTTSS------------EEEEEEEETTCSCCEEEEEET-TTCCBCS-----SCCBSC--CTTCCCEECTTSSEEEE
T ss_pred EEEECCCCC------------EEEEEECCCCCceEEEEEEEC-CCCCCcC-----CcccCc--ccccceEEecCCCEEEE
Confidence 679999999 566 5666789999993 3222110 000111 11257899999999998
Q ss_pred e-cCCc-------------EEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC----eEEEEeC
Q 011257 251 A-DDLR-------------INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDM 312 (490)
Q Consensus 251 ~-~d~~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~iwd~ 312 (490)
+ .+.. |++|++.+....-.++ .....+...+..+.|+|+| ++|+..+.++ .|++||.
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv----~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV----HERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE----ECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECT
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEE----EecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcC
Confidence 7 6555 9999998554221111 0233455678899999999 7777666655 6777765
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc----CCeEEEEeccCCCCc--eeeeeeec-cc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP--VATFQVHE-HL 385 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~----d~~i~iwd~~~~~~~--~~~~~~~~-~~ 385 (490)
.+++ ...+..+. ..+....+ ++|.+++.++ ++.|.+||+.+ +.. ...+..+. ..
T Consensus 260 ~~~~-----~~~l~~~~------------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~ 320 (695)
T 2bkl_A 260 GEKD-----FRLLVKGV------------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSA 320 (695)
T ss_dssp TCSS-----CEEEEECS------------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSC
T ss_pred CCCc-----eEEeecCC------------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCC
Confidence 5443 23333332 34455556 6666444443 38899999975 442 23333332 11
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC-CCceeeeEeccC-CCceEEEEEccCCCCCCC
Q 011257 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAESTTLEAS-KNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~~-~~~v~~~~~sp~~~~~~~ 458 (490)
. +..++|+ ++.++++...|+..+||.+. +++. ...+..+ ...+..++++|++....+
T Consensus 321 ~--------------l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~ 379 (695)
T 2bkl_A 321 S--------------LLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP-VRTVQLPGVGAASNLMGLEDLDDAYY 379 (695)
T ss_dssp E--------------EEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE-EEECCCSSSSEECCCBSCTTCSEEEE
T ss_pred e--------------EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe-eEEecCCCCeEEEEeecCCCCCEEEE
Confidence 0 3467888 77888899999998888765 3544 3555554 567788888888865553
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=3.9e-10 Score=104.62 Aligned_cols=297 Identities=6% Similarity=-0.018 Sum_probs=170.8
Q ss_pred EECCCCCEEEEecC--CC---cEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecccee
Q 011257 42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (490)
Q Consensus 42 ~~s~dg~~latg~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 116 (490)
...|+++++++... .. .|.++|..+++.+ ..+.... . -
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g~------------~-p- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------------L-P- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-----------------------EEecCCC------------C-C-
Confidence 44578887777653 22 7899998876521 2222111 2 2
Q ss_pred EEEEeecCCCcEEEEEe----------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
.++++| ++++++++. .++.|.+||..+.+............ . .....|..++++|||+
T Consensus 70 ~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-------~-~~g~~p~~~~~spDG~-- 137 (373)
T 2mad_H 70 NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-------F-DVGPYSWMNANTPNNA-- 137 (373)
T ss_pred CeEECC--CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-------c-ccCCCccceEECCCCC--
Confidence 688986 667887775 36789999999877665444321000 0 0002234789999999
Q ss_pred ccccccCCCCccccCCC--CCcEEEeeeecccccccccceeee-eccccccceeEEEecCCCCEE-EEe-cCCcEEEEEc
Q 011257 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNL 261 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~--~g~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l-~~~-~d~~i~~wd~ 261 (490)
+|+++.. ++.|.++| .... .... + .. -.++.+.|+++.. ++. .||.+.++|.
T Consensus 138 ----------~l~v~n~~~~~~v~viD-~t~~-------~~~~~i-~~----~~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 138 ----------DLLFFQFAAGPAVGLVV-QGGS-------SDDQLL-SS----PTCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ----------EEEEEecCCCCeEEEEE-CCCC-------EEeEEc-CC----CceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 5665543 57788876 3221 1111 1 00 0124455665433 333 7899999999
Q ss_pred CCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccc
Q 011257 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (490)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 341 (490)
+...... ....+. +.+.........+.+++ ..++..+..+.+.+.|+....... +..+......... .....
T Consensus 195 -~g~~~~~-~~~~~~-~~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~~p 266 (373)
T 2mad_H 195 -AGGAAGA-GLVGAM-LTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKA--DTWRP 266 (373)
T ss_pred -CCcEEEE-Eecccc-ccCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcccc--cceec
Confidence 4543311 111000 11111112335667776 444444478899999997653210 1122111000000 00001
Q ss_pred cceEEEEECCCCCEEEEEc-----------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 342 ASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
.....+.++||++.++... .+.|.++|+.+ .+.+.++...... ..++|+|||
T Consensus 267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~Dg 329 (373)
T 2mad_H 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQDG 329 (373)
T ss_pred CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCCC
Confidence 2345578999998777642 25799999997 7887887654322 389999999
Q ss_pred C-EEEEee-cCCeEEEEecCCCceeeeE
Q 011257 411 G-RVATGS-YSNLFRVFGCSEGSAESTT 436 (490)
Q Consensus 411 ~-~l~s~~-~dg~i~vw~~~~~~~~~~~ 436 (490)
+ +++++. .++.|.+||+.+++. +..
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~v-v~~ 356 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQ-DQS 356 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCE-Eee
Confidence 9 677776 489999999999987 344
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=2.2e-10 Score=104.80 Aligned_cols=252 Identities=7% Similarity=-0.009 Sum_probs=155.3
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
.....+.+.. +++.++...++.|.+||..+++. +..+.. . ...
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~-----------------------~~~i~~-~------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKE-----------------------VGRITG-F------------TSP 86 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEEC-C------------SSE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEE-----------------------EEEcCC-C------------CCC
Confidence 4467788753 44555566678999999987763 222321 1 447
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
..++++| ++..+++...++.|.+||..+++........... + ....|..+++ .+++
T Consensus 87 ~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~------~----~~~~p~~i~~-~~~~----------- 142 (328)
T 3dsm_A 87 RYIHFLS--DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD------M----ESGSTEQMVQ-YGKY----------- 142 (328)
T ss_dssp EEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC------T----TTCBCCCEEE-ETTE-----------
T ss_pred cEEEEeC--CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc------c----cCCCcceEEE-ECCE-----------
Confidence 7889976 4544444448999999999999876654432200 0 0012335566 3333
Q ss_pred CccccCC-CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC----------CcEEEEEcCC
Q 011257 196 DSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----------LRINLWNLEI 263 (490)
Q Consensus 196 ~~l~~~~-~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----------~~i~~wd~~~ 263 (490)
.+++.. .++.|.++|. .. .+....+.. ......++++|+|++++++ .+ +.|.++|..+
T Consensus 143 -lyv~~~~~~~~v~viD~-~t------~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 143 -VYVNCWSYQNRILKIDT-ET------DKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET 212 (328)
T ss_dssp -EEEEECTTCCEEEEEET-TT------TEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred -EEEEcCCCCCEEEEEEC-CC------CeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence 333333 4789999982 21 111122211 1334678899999988877 44 7899999874
Q ss_pred CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccc
Q 011257 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
. +....+. +. ....+..++++|++ +.++++.. .|.+||..+++.... ..+... ...
T Consensus 213 ~-~v~~~~~-----~~-~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~------------~~~ 268 (328)
T 3dsm_A 213 F-TVEKQFK-----FK-LGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVR--PFLEFR------------DTK 268 (328)
T ss_dssp T-EEEEEEE-----CC-TTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSS--CSBCCC------------SSC
T ss_pred C-eEEEEEe-----cC-CCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeee--eeecCC------------CCc
Confidence 4 3333221 11 12367899999998 67766654 899999988764211 111110 145
Q ss_pred eEEEEECC-CCCEEEEE----cC-CeEEEEeccCCCCceeeeeeecc
Q 011257 344 ISDIKFAR-NGRHILSR----DY-MTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 344 i~~l~~sp-~g~~l~sg----~d-~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
...++++| +++++++. .. +.|.+||.. ++.+.++.....
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~--g~~~~~i~~G~~ 313 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ--GKLIDEFYVGII 313 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT--CCEEEEEEEEES
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC--CCEEEEEEeccC
Confidence 78899999 56666665 33 899999997 788887765544
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=1.6e-10 Score=105.07 Aligned_cols=245 Identities=9% Similarity=0.057 Sum_probs=150.6
Q ss_pred ccEEEEEECCCCCEEEE-------ecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccc--ccccCCccccee
Q 011257 36 DIISAIEFDKSGDHLAT-------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT--EFQSHEPEFDYL 106 (490)
Q Consensus 36 ~~V~~~~~s~dg~~lat-------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~h~~~~~~~ 106 (490)
....+++|+++|.++++ +..++.|.+||..+++.. .+. ...++.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------------------~~~~~~~~~~~------ 70 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------------------VICKPEVNGYG------ 70 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------------------EEECCEETTEE------
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE---------------------EEEecccCCCC------
Confidence 34679999999988887 677889999997665421 000 001122
Q ss_pred eeeeeccceeEEEEeecCC-CcEEEEEeCcCeEEEEEccCCeEEEE-eeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 107 KSLEIEEKINKIRWCQSAN-SALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 107 ~~~~~~~~V~~v~~~p~~~-~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
..+.++++.+ + +. ++.++..+.|.+||.. ++.... ..... + .....+..+++.++|+
T Consensus 71 ------~~~~~i~~~~--~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~~~--------~---~~~~~~~~i~~d~~g~ 129 (314)
T 1pjx_A 71 ------GIPAGCQCDR--DANQ-LFVADMRLGLLVVQTD-GTFEEIAKKDSE--------G---RRMQGCNDCAFDYEGN 129 (314)
T ss_dssp ------CCEEEEEECS--SSSE-EEEEETTTEEEEEETT-SCEEECCSBCTT--------S---CBCBCCCEEEECTTSC
T ss_pred ------CCCceEEEec--CCCc-EEEEECCCCEEEEeCC-CCEEEEEeccCC--------C---ccccCCcCEEECCCCC
Confidence 4588899975 4 44 4444445579999998 665443 21110 0 0112344788899887
Q ss_pred ccccccccCCCCccccCCCC---------------CcEEEeeeecccccccccceeeeeccccccceeEEEec----CCC
Q 011257 185 CGERNFGCASNDSSFPPGGV---------------SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDG 245 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~---------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~ 245 (490)
+.++...+ +.|..++ .+. +... + ..+......++++ +++
T Consensus 130 ------------l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~g----~~~~-~-~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 130 ------------LWITAPAGEVAPADYTRSMQEKFGSIYCFT----TDG----QMIQ-V-DTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp ------------EEEEECBCBCTTSCCCBTTSSSCEEEEEEC----TTS----CEEE-E-EEEESSEEEEEEEECTTSCE
T ss_pred ------------EEEEecCcccccccccccccCCCCeEEEEC----CCC----CEEE-e-ccCCCCcceEEEecccCCCC
Confidence 33433332 3455444 111 1111 1 1222445788999 999
Q ss_pred CEEEEe--cCCcEEEEEcCCCCcee--eeeecCCCccCCCC-CceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccc
Q 011257 246 ETFISA--DDLRINLWNLEISNQSF--NIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (490)
Q Consensus 246 ~~l~~~--~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 320 (490)
+.++.+ .++.|.+|+....+... ..+ ..+..+. ..+..++++++| +++++...++.|.+||..+++..
T Consensus 188 ~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~-- 260 (314)
T 1pjx_A 188 YQLIVAETPTKKLWSYDIKGPAKIENKKVW----GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPK-- 260 (314)
T ss_dssp EEEEEEETTTTEEEEEEEEETTEEEEEEEE----EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCS--
T ss_pred CEEEEEECCCCeEEEEECCCCCccccceEE----EECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEe--
Confidence 765554 57899999986222211 111 0223333 567899999999 88888878899999998866532
Q ss_pred ccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-CCeEEEEeccC
Q 011257 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINM 371 (490)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d~~i~iwd~~~ 371 (490)
..+..+. ..+.+++|+|+|+.|..+ . ++.|..|++..
T Consensus 261 --~~~~~~~------------~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 261 --MRIRCPF------------EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp --EEEECSS------------SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred --EEEeCCC------------CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 3333221 468999999999966554 3 37999999875
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=7.1e-10 Score=99.95 Aligned_cols=264 Identities=8% Similarity=0.021 Sum_probs=168.1
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+.++++.+ ++..+++...++.|.+||.. ++..... ... ....+..+++.++|.
T Consensus 20 ~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~-~~~~~~~-~~~-------------~~~~~~~i~~~~~g~-------- 74 (300)
T 2qc5_A 20 SGPYGITSSE--DGKVWFTQHKANKISSLDQS-GRIKEFE-VPT-------------PDAKVMCLIVSSLGD-------- 74 (300)
T ss_dssp CCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEE-CSS-------------TTCCEEEEEECTTSC--------
T ss_pred CCcceeeECC--CCCEEEEcCCCCeEEEECCC-CceEEEE-CCC-------------CCCcceeEEECCCCC--------
Confidence 4578888875 56677776678999999988 6554321 110 012233677788887
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~ 271 (490)
+.++...++.|..+| .. .. ............+..+++.++++++++. .++.|..+|.. .. ....
T Consensus 75 ----l~v~~~~~~~v~~~d-~~---g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~- 139 (300)
T 2qc5_A 75 ----IWFTENGANKIGKLS-KK---GG----FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-IYEY- 139 (300)
T ss_dssp ----EEEEETTTTEEEEEC-TT---SC----EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-EEEE-
T ss_pred ----EEEEecCCCeEEEEC-CC---CC----eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-EEEc-
Confidence 555555577788877 11 11 1111112233567899999999988887 68889999886 33 2221
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
.+......+..+++.+++ +++++...++.|..+|. +++.. .+.... +...+..+++++
T Consensus 140 -----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~~----------~~~~~~~i~~d~ 197 (300)
T 2qc5_A 140 -----DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPLPT----------NAAAPVGITSGN 197 (300)
T ss_dssp -----ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEECSS----------TTCCEEEEEECT
T ss_pred -----cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeCCC----------CCCCcceEEECC
Confidence 122234568899999999 77777766889999998 44421 221110 114578999999
Q ss_pred CCCEEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 352 ~g~~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+|++.++... +.|.+||.. +.... +...... ..+.+++++++|++.++...++.|..|+. ++
T Consensus 198 ~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~~-------------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g 260 (300)
T 2qc5_A 198 DGALWFVEIMGNKIGRITTT--GEISE-YDIPTPN-------------ARPHAITAGKNSEIWFTEWGANQIGRITN-DN 260 (300)
T ss_dssp TSSEEEEETTTTEEEEECTT--CCEEE-EECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred CCCEEEEccCCCEEEEEcCC--CcEEE-EECCCCC-------------CCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence 9988777654 789999983 44332 2111100 11358999999997777666789999998 45
Q ss_pred ceeeeEeccCCCceEEEEEccCCCC
Q 011257 431 SAESTTLEASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~sp~~~~ 455 (490)
+.....+......+.++++.++|..
T Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~g~l 285 (300)
T 2qc5_A 261 TIQEYQLQTENAEPHGITFGKDGSV 285 (300)
T ss_dssp CEEEEECCSTTCCCCCEEECTTSCE
T ss_pred cEEEEECCccCCccceeEeCCCCCE
Confidence 4422223333456788888888764
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=1.9e-10 Score=107.26 Aligned_cols=308 Identities=7% Similarity=0.044 Sum_probs=175.0
Q ss_pred CCCCEEEEecCC-----CcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeEEE
Q 011257 45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (490)
Q Consensus 45 ~dg~~latg~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 119 (490)
++++.+++.... +.|.++|..+.+.+ ..+..-. .+ .+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-----------------------~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-----------------------GMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-----------------------EEEECCC------------CC--ceE
Confidence 477766665442 69999998876632 2222111 22 688
Q ss_pred EeecCCCcEEEEEe----------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 120 ~~p~~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
++| ++++++++. .++.|.++|..+.+............ +.....|..++++|||+
T Consensus 125 ~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r--------~~~g~~P~~~~~spDGk----- 189 (426)
T 3c75_H 125 AAE--DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR--------FLVGTYQWMNALTPDNK----- 189 (426)
T ss_dssp ECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGSEECTTSS-----
T ss_pred ECC--CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc--------cccCCCcceEEEcCCCC-----
Confidence 986 666777664 47799999999998776655431100 00012234789999999
Q ss_pred cccCCCCccccCC--CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCC-CEEEEe-cCCcEEEEEcCCCC
Q 011257 190 FGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 190 ~~~~~~~~l~~~~--~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~~wd~~~~~ 265 (490)
+++++. .++.|.+.| .... +....+..+. +....|++ ..+++. .||.+.+.+.. ..
T Consensus 190 -------~lyV~n~~~~~~VsVID-~~t~------kvv~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~ 249 (426)
T 3c75_H 190 -------NLLFYQFSPAPAVGVVD-LEGK------TFDRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFA-DG 249 (426)
T ss_dssp -------EEEEEECSSSCEEEEEE-TTTT------EEEEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECC-TT
T ss_pred -------EEEEEecCCCCeEEEEE-CCCC------eEEEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECC-CC
Confidence 566554 367899988 2211 1111111110 12223333 233333 56666666663 33
Q ss_pred ceeeeeecCCCccCCCCCce-EEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccce
Q 011257 266 QSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 344 (490)
+...... ..+.....++ ..+.+.+++ ..++.....+.+.+.|+....... +..+...... .. .........
T Consensus 250 ~v~~~~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~-~i-~~g~~p~g~ 321 (426)
T 3c75_H 250 ETKVTNT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEA-ER-ADDWRPGGW 321 (426)
T ss_dssp CCEEEEC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTT-TG-GGTEEECSS
T ss_pred cEEEEee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeecccc-cc-ccccccCCc
Confidence 2221100 0011111111 235678888 666666778999999987654210 1111100000 00 000001222
Q ss_pred EEEEECCCCCEEEEEc-----------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCC-E
Q 011257 345 SDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R 412 (490)
Q Consensus 345 ~~l~~sp~g~~l~sg~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~ 412 (490)
..++++|+++.++... .+.|.+.|+.+ .+.+.++...... +.+.|+|||+ +
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~ 384 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPL 384 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCE
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEE
Confidence 3468999988776642 25799999998 8888888765533 3899999999 8
Q ss_pred EEEee-cCCeEEEEecCCCceeeeEe-ccCCCceEEEEEccC
Q 011257 413 VATGS-YSNLFRVFGCSEGSAESTTL-EASKNPMRRQVQTPS 452 (490)
Q Consensus 413 l~s~~-~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~sp~ 452 (490)
++++. .++.|.|+|+.+++. +..+ .....+. +..+||
T Consensus 385 lyv~n~~s~~VsVID~~t~kv-v~tI~~vG~~P~--~i~~~~ 423 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEE-LRSVDQLGRGPQ--IITTHD 423 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCE-EEEECCCSSSCC--EEECCC
T ss_pred EEEEcCCCCeEEEEECCCCCE-EEEecCCCCCCc--EEEcCC
Confidence 88888 589999999999987 4665 3223332 566664
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.39 E-value=5.1e-10 Score=100.85 Aligned_cols=233 Identities=8% Similarity=0.064 Sum_probs=143.9
Q ss_pred cEEEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 37 IISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 37 ~V~~~~~s~d-g~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
---+..|+++ +.++++...++.|..||..++.. ..+ ... ..+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------------------------~~~-~~~------------~~~ 56 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------------------------QRV-TMD------------APV 56 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------------------------EEE-ECS------------SCE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------------------------EEE-eCC------------Cce
Confidence 3457889995 45666666788999999876541 111 112 558
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
.++++.| ++.++ ++. ++.|.+||..+++...+.....
T Consensus 57 ~~i~~~~--dG~l~-v~~-~~~l~~~d~~~g~~~~~~~~~~--------------------------------------- 93 (297)
T 3g4e_A 57 SSVALRQ--SGGYV-ATI-GTKFCALNWKEQSAVVLATVDN--------------------------------------- 93 (297)
T ss_dssp EEEEEBT--TSSEE-EEE-TTEEEEEETTTTEEEEEEECCT---------------------------------------
T ss_pred EEEEECC--CCCEE-EEE-CCeEEEEECCCCcEEEEEecCC---------------------------------------
Confidence 8899985 56644 444 5689999998887554322110
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC---------CcEEEEEcCCCC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEISN 265 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------~~i~~wd~~~~~ 265 (490)
......+..++++|+|+++++. .. ..-.+|.+....
T Consensus 94 ----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g 139 (297)
T 3g4e_A 94 ----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH 139 (297)
T ss_dssp ----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred ----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence 0001335678888888876654 22 234555554333
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CccccccccceeccccCCCccccccccccc
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 343 (490)
....+ ..+......++|+|++..++++.+.++.|.+||+. ++.... .+.+.. +..+...
T Consensus 140 ~~~~~--------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~---------~~~~~~~ 200 (297)
T 3g4e_A 140 HVKKY--------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK---------LEKEEQI 200 (297)
T ss_dssp CEEEE--------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE---------CCGGGCE
T ss_pred CEEEE--------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE---------CCCCCCC
Confidence 32221 12234467899999993345666678999999973 443210 011111 0111245
Q ss_pred eEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc-CCCCEEEEeec
Q 011257 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 418 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~ 418 (490)
...++++++|++.++.. .+.|..||..+ ++.+..+..+... +++++|. ||++.|..++.
T Consensus 201 p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 201 PDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEEB
T ss_pred CCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEcC
Confidence 78899999998887764 48899999986 7888777655332 4589998 88887665553
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.37 E-value=2.7e-10 Score=101.10 Aligned_cols=220 Identities=8% Similarity=0.005 Sum_probs=142.0
Q ss_pred ccCceEEeccCCccccccccCCCCccc-cCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 173 SAIPKSYMANGGCGERNFGCASNDSSF-PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 173 ~~~~~~~s~~g~~~~~~~~~~~~~~l~-~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
.|..++++++|+ +++ +...++.|.+|+ ...... ..+...+...+.+++++++++++++.
T Consensus 25 ~p~~i~~~~~g~------------l~v~~~~~~~~i~~~~-~~~~~~-------~~~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN------------VYVTSEGMYGRVVKLA-TGSTGT-------TVLPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC------------EEEEECSSSCEEEEEC-C------------EECCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC------------EEEEccCCCCcEEEec-CCCccc-------ceEeeCCcCCcceeEECCCCCEEEEc
Confidence 344788888887 555 557788899887 211110 11112223467789999999866655
Q ss_pred cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCC
Q 011257 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (490)
Q Consensus 252 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 331 (490)
.++.|.+||..... ... + .......+..++++|++ +++++...++.|.+|+..+.... ......
T Consensus 85 ~~~~i~~~d~~~~~-~~~-~------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~--- 148 (270)
T 1rwi_B 85 FNNRVVTLAAGSNN-QTV-L------PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT----VLPFTG--- 148 (270)
T ss_dssp TTTEEEEECTTCSC-CEE-C------CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCE----ECCCCS---
T ss_pred CCCEEEEEeCCCce-Eee-e------ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeE----eecccc---
Confidence 67889999987332 211 1 11223568899999999 78888778899999976553211 000010
Q ss_pred CccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 332 GTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 332 ~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
...+..++++++|+++++.. ++.|.+||... .........+. .....++++++|
T Consensus 149 ---------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~---------------~~p~~i~~d~~g 203 (270)
T 1rwi_B 149 ---------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFTDI---------------TAPWGIAVDEAG 203 (270)
T ss_dssp ---------CCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCSSC---------------CSEEEEEECTTC
T ss_pred ---------CCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeecccCC---------------CCceEEEECCCC
Confidence 13567899999999777764 48999999874 33222111110 113489999999
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCC
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 454 (490)
.++++...++.|.+|+..+... ......+...+.+++++|+|.
T Consensus 204 ~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 204 TVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp CEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCC
T ss_pred CEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCC
Confidence 8888777788999999876543 222223345789999999986
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.5e-09 Score=97.82 Aligned_cols=194 Identities=8% Similarity=0.046 Sum_probs=120.0
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---------
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 304 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------- 304 (490)
..+.+++++++++++++. +..|.+||..+. ....+.... .......+..++++|+| +++++...+
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g-~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQ-SAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTT-EEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCC-cEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence 356788999999955544 567899998743 322222110 01123457899999999 766654321
Q ss_pred CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-CCeEEEEecc-CCCCce--eee
Q 011257 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN-MDSGPV--ATF 379 (490)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d~~i~iwd~~-~~~~~~--~~~ 379 (490)
..-.+|.+...... ..+... ......++|+||++.|+.. + .+.|.+||++ ..+... ..+
T Consensus 128 ~~~~l~~~d~~g~~----~~~~~~------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 128 HQGALYSLFPDHHV----KKYFDQ------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp TCEEEEEECTTSCE----EEEEEE------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred CCcEEEEEECCCCE----EEEeec------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 22344444322111 111111 1346789999999977654 4 4899999984 213321 111
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEc-cCCCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSRPL 458 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~~~ 458 (490)
....... .....++++++|++.++...++.|..||.++|+. +..+..+...+++++|. |++.....
T Consensus 192 ~~~~~~~------------~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~-~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 192 YKLEKEE------------QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR-LQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp EECCGGG------------CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-EEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred EECCCCC------------CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-EEEEECCCCCceEEEEeCCCCCEEEE
Confidence 1100000 0023789999999888877788999999998887 57777777789999999 88876665
Q ss_pred CccC
Q 011257 459 GSLS 462 (490)
Q Consensus 459 ~~~~ 462 (490)
++..
T Consensus 259 t~~~ 262 (297)
T 3g4e_A 259 TCAR 262 (297)
T ss_dssp EEBC
T ss_pred EcCC
Confidence 5543
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.35 E-value=5.9e-10 Score=98.90 Aligned_cols=216 Identities=11% Similarity=0.080 Sum_probs=148.0
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeeccccc-cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecC
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK 274 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~ 274 (490)
+.|++++.++.|.+|| . ..++....+ ..+. ..+.++.++|+|++++ +.++.|..||. +++...+.-
T Consensus 6 ~~lv~~~~~~~v~~~d----~---~tG~~~w~~-~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~--- 72 (276)
T 3no2_A 6 HLLVGGSGWNKIAIIN----K---DTKEIVWEY-PLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIA--- 72 (276)
T ss_dssp EEEEECTTCSEEEEEE----T---TTTEEEEEE-ECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEE---
T ss_pred cEEEeeCCCCEEEEEE----C---CCCeEEEEe-CCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEc---
Confidence 3788999999999999 2 122223333 2232 4678899999999998 54667999998 455444321
Q ss_pred CCccCCCCCceEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCC
Q 011257 275 PANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (490)
Q Consensus 275 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g 353 (490)
. +....+.++.+.|+| +++++.+. ++.+..+|. +++.. ..+..... ...+......+++.++|
T Consensus 73 ---~-~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l----~~~~~~~~------~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 73 ---A-PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVL----SKTEFETG------IERPHAQFRQINKNKKG 136 (276)
T ss_dssp ---C-CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEE----EEEEECCS------CSSGGGSCSCCEECTTS
T ss_pred ---C-CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEE----EEEeccCC------CCcccccccCceECCCC
Confidence 1 123467889999999 88888777 788888886 45543 23321110 00111245566789999
Q ss_pred CEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 354 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 354 ~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.++++.. ++.|..||.+ ++.+..+...... .++.+.++|+++++++.++.|..+|..+|+.
T Consensus 137 ~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN--GQLLNSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp CEEEEETTTTEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred CEEEEecCCCEEEEECCC--CCEEEEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 9999975 5999999986 7888777654321 2678889999999999888999999999987
Q ss_pred eeeEeccCC------CceEEEEEccCCCCCCCC
Q 011257 433 ESTTLEASK------NPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 433 ~~~~~~~~~------~~v~~~~~sp~~~~~~~~ 459 (490)
+..+..+. ..+..++..++|......
T Consensus 199 -~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 199 -VRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -EEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 45554322 236777888888765543
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=3e-10 Score=103.24 Aligned_cols=249 Identities=9% Similarity=0.068 Sum_probs=148.4
Q ss_pred ceeEEEEeecCCCcEEEE-------EeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEecc-CCc
Q 011257 114 KINKIRWCQSANSALYLL-------STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-GGC 185 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~-------~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~ 185 (490)
...+++|.+ ++.++++ ...++.|.+||..+++.......... .....+..++++++ |+
T Consensus 19 ~~~~~~~~~--~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------~~~~~~~~i~~~~~~g~- 84 (314)
T 1pjx_A 19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-----------GYGGIPAGCQCDRDANQ- 84 (314)
T ss_dssp TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET-----------TEECCEEEEEECSSSSE-
T ss_pred CccCceECC--CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccC-----------CCCCCCceEEEecCCCc-
Confidence 367889974 5667777 57789999999888876543220000 00012337788888 65
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cC-----------
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----------- 253 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----------- 253 (490)
++++.. ...|.+|| .. ....... ...........+.+++++++|+++++. .+
T Consensus 85 -----------l~v~~~-~~~l~~~d-~~-g~~~~~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 85 -----------LFVADM-RLGLLVVQ-TD-GTFEEIA--KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp -----------EEEEET-TTEEEEEE-TT-SCEEECC--SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred -----------EEEEEC-CCCEEEEe-CC-CCEEEEE--eccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 333333 34677777 21 1110000 000001122457899999999888876 44
Q ss_pred ----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc----CCCCcEE-EEEeCCCeEEEEeCC-Cccccccccc
Q 011257 254 ----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTHCNML-AYSSSKGSIRLIDMR-QSALCDTHSK 323 (490)
Q Consensus 254 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l-~~~~~dg~i~iwd~~-~~~~~~~~~~ 323 (490)
+.|..|+.. +..... ..+......++++ |++ +.+ ++...++.|.+||.. .++... ..
T Consensus 149 ~~~~~~l~~~~~~--g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~ 215 (314)
T 1pjx_A 149 QEKFGSIYCFTTD--GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KK 215 (314)
T ss_dssp SSSCEEEEEECTT--SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EE
T ss_pred cCCCCeEEEECCC--CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ce
Confidence 456666654 222221 1123446789999 998 554 444568999999976 332110 01
Q ss_pred eeccccCCCccccccccc-cceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccce
Q 011257 324 LFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 324 ~~~~~~~~~~~~~~~~h~-~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
.+.. +..+. ..+..++++++|+++++. .++.|.+||.++ ++.+..+..+... +
T Consensus 216 ~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~---------------~ 270 (314)
T 1pjx_A 216 VWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEK---------------P 270 (314)
T ss_dssp EEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSC---------------E
T ss_pred EEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCC---------------c
Confidence 1111 01111 346789999999988876 468999999875 5655555443222 3
Q ss_pred eeEEEcCCCCEEE-EeecCCeEEEEecCCC
Q 011257 402 FECCLSGDGGRVA-TGSYSNLFRVFGCSEG 430 (490)
Q Consensus 402 ~~~~~s~d~~~l~-s~~~dg~i~vw~~~~~ 430 (490)
.+++|+|+++.|. +...++.|..|++...
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 5899999999554 4456688999998753
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=2.7e-09 Score=100.47 Aligned_cols=268 Identities=11% Similarity=0.113 Sum_probs=156.2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
....|+|.| ++.++++...++.|++||..++.+..+.... ..+. ++|+++++
T Consensus 132 ~P~~la~d~--~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~----------------~~~~-ia~~~~g~--------- 183 (409)
T 3hrp_A 132 YMWGIAAVG--NNTVLAYQRDDPRVRLISVDDNKVTTVHPGF----------------KGGK-PAVTKDKQ--------- 183 (409)
T ss_dssp CEEEEEECS--TTEEEEEETTTTEEEEEETTTTEEEEEEETC----------------CBCB-CEECTTSS---------
T ss_pred CceEEEEeC--CCCEEEEecCCCcEEEEECCCCEEEEeeccC----------------CCCc-eeEecCCC---------
Confidence 477899985 5667777777899999999988776654321 1222 78899988
Q ss_pred CCCccccCCCCC--cEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeee
Q 011257 194 SNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 194 ~~~~l~~~~~~g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~ 270 (490)
.|+++..++ .|.+++ ... .................+.+++++|++..|+.+ .++.|+.||...... ..
T Consensus 184 ---~l~~~d~~~~~~I~~~d-~~~---~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~ 254 (409)
T 3hrp_A 184 ---RVYSIGWEGTHTVYVYM-KAS---GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TL 254 (409)
T ss_dssp ---EEEEEBSSTTCEEEEEE-GGG---TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EE
T ss_pred ---cEEEEecCCCceEEEEE-cCC---CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EE
Confidence 566666554 666666 111 111001101101133567789999954555557 788999999874432 11
Q ss_pred eecCCCccCCCCCce-E-EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceecccc-CCCcc--ccccccccceE
Q 011257 271 VDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIASIS 345 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v-~-~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~h~~~i~ 345 (490)
+... ...++...- . .++|+|++..++++-..++.|+.||..... ..+.+.. ..... ......-....
T Consensus 255 ~~~~--~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 255 IKQL--ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp EEEC--CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred Eecc--cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCe
Confidence 1000 011122211 3 899999542777777788999999976531 2222221 00000 00000113478
Q ss_pred EEEECCCCCEEEEEc-C-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEE
Q 011257 346 DIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~ 423 (490)
.++++|+|+++++-. . +.|+.|++.. + .+.++.++...............+.....++++++|.++++-..++.|+
T Consensus 327 gia~d~dG~lyvad~~~~~~I~~~~~~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 327 GMTVDEDGNFYIVDGFKGYCLRKLDILD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEECTTCCEEEEETTTTCEEEEEETTT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred EEEEeCCCCEEEEeCCCCCEEEEEECCC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 999999999777755 4 8999999764 4 3555555421110000000001112245899999988888888888898
Q ss_pred EEecC
Q 011257 424 VFGCS 428 (490)
Q Consensus 424 vw~~~ 428 (490)
.++++
T Consensus 405 ~i~~e 409 (409)
T 3hrp_A 405 KYAVE 409 (409)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87753
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.33 E-value=4e-10 Score=103.17 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=160.5
Q ss_pred ecCCCcEEEEEeC-----cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 122 QSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 122 p~~~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
|.+++..++++.. ++.|.+.|..+++......... .| .++++|||+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~----------------~P-~va~spDG~------------ 90 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----------------LP-NPVVADDGS------------ 90 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----------------SC-EEEECTTSS------------
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC----------------CC-cEEECCCCC------------
Confidence 3456777777754 6899999999998776554331 23 489999999
Q ss_pred ccccCC----------CCCcEEEeeeecccccccccceeeeeccc------cccceeEEEecCCCCEEEEe-c--CCcEE
Q 011257 197 SSFPPG----------GVSSLRLPVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA-D--DLRIN 257 (490)
Q Consensus 197 ~l~~~~----------~~g~v~iw~~~~~~~~~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~~~-~--d~~i~ 257 (490)
+++++. .++.|.+||. ... +....+.-+ .......++|+|||++++.+ . ++.|.
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~-~t~------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~Vs 163 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDP-VTL------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG 163 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT-TTC------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred EEEEEcccccccccCCCCCEEEEEEC-CCC------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEE
Confidence 455443 3678999992 211 111111111 01244578999999998886 3 68999
Q ss_pred EEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-ccccccccceeccccCCCcccc
Q 011257 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSF 336 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 336 (490)
++|+.+. +....++ ..+ +....|.+.+.+++.+.||++.+.++.. ++........+....
T Consensus 164 VID~~t~-~vv~tI~-----v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~------- 224 (386)
T 3sjl_D 164 VVDLEGK-AFKRMLD-----VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED------- 224 (386)
T ss_dssp EEETTTT-EEEEEEE-----CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT-------
T ss_pred EEECCCC-cEEEEEE-----CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc-------
Confidence 9999854 4444331 111 1222354447788888999999999876 443210000111000
Q ss_pred ccccccce-EEEEE-CCCCCEEEEEcCCeEEEEeccCCCC--ceeeeeeeccccccccccccCCCccceeeEEEcCCCCE
Q 011257 337 FTEIIASI-SDIKF-ARNGRHILSRDYMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (490)
Q Consensus 337 ~~~h~~~i-~~l~~-sp~g~~l~sg~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 412 (490)
.++ ....| .++|++++...+|+|.+.|+.. .. .+..+..-... .+..-..... ...++++++++.
T Consensus 225 -----~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~-~~~~v~~~~~~~~~~--~~~~g~~p~g---~q~~a~~~~~~~ 293 (386)
T 3sjl_D 225 -----EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEA--ERADGWRPGG---WQQVAYHRALDR 293 (386)
T ss_dssp -----SCBCSCCEEETTTTEEEEEBTTSEEEEEECTT-SSCEECCCEESSCHH--HHHTTEEECS---SSCEEEETTTTE
T ss_pred -----ccccccceeEcCCCcEEEEeCCCEEEEEECCC-Ccceeecceeccccc--cccccccCCC---cceeeECCCCCe
Confidence 112 12355 4788877766679999999974 32 22222200000 0000000000 115788999998
Q ss_pred EEEeec----------CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 413 VATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 413 l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
|..... .+.|.+.|+.+++. +..+... ..+..++++||++..++.
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~vg-~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEMG-HEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEEE-EEECEEEECSSSSCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeE-EEEEECC-CCcceEEECCCCCeEEEE
Confidence 877653 25799999999987 4555432 378899999999755554
No 209
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.32 E-value=4.5e-10 Score=101.68 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=140.4
Q ss_pred cccccEEEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeee
Q 011257 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~-~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~ 111 (490)
..........|+|+|+ +++++..++.|..|+.. ++ ...+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~------------------------~~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT------------------------VDVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC------------------------EEEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC------------------------EEEEeCCC-----------
Confidence 3455678899999998 66677788899999863 32 11222222
Q ss_pred ccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 112 ~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
..++.+++.| +|.++++...++.|.+|+.. ++..........
T Consensus 86 -~~~~gl~~d~--dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~---------------------------------- 127 (305)
T 3dr2_A 86 -AFTNGNAVDA--QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG---------------------------------- 127 (305)
T ss_dssp -SCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEECEETT----------------------------------
T ss_pred -CccceeeECC--CCCEEEEECCCCEEEEECCC-CCEEEEEeccCC----------------------------------
Confidence 4578899975 66666555556889999876 544332211100
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE----e-c-------------C
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~-~-------------d 253 (490)
.....+..++++++|+++++ | . .
T Consensus 128 ---------------------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 128 ---------------------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp ---------------------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred ---------------------------------------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 00022344555566655554 2 1 2
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCccccccccceecc
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
+.|..+|..+.. ...+ . .......++|+|++ +.|+.+... +.|.+||+..+... ....+..
T Consensus 169 ~~v~~~d~~~g~-~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~ 235 (305)
T 3dr2_A 169 HSVYRLPPDGSP-LQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH--DRRHFAS 235 (305)
T ss_dssp EEEEEECSSSCC-CEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE--EEEEEEC
T ss_pred CeEEEEcCCCCc-EEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc--CCeEEEE
Confidence 345566654222 2111 1 22346789999999 766666654 78999998754311 0111111
Q ss_pred ccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (490)
. .......++++++|++.++. .+.|.+|+.. ++.+..+..+.. +.+++|+
T Consensus 236 ~-----------~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f~ 285 (305)
T 3dr2_A 236 V-----------PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTFD 285 (305)
T ss_dssp C-----------SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEEC
T ss_pred C-----------CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEEe
Confidence 0 01335678899999965555 4459999985 677776655432 2389999
Q ss_pred CCCCEEEEeecCCeEE
Q 011257 408 GDGGRVATGSYSNLFR 423 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~ 423 (490)
++++.|..++.++..+
T Consensus 286 ~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWM 301 (305)
T ss_dssp TTSCEEEEEETTEEEE
T ss_pred CCCCEEEEEcCCeEEE
Confidence 9999888877765333
No 210
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=2e-09 Score=99.79 Aligned_cols=256 Identities=9% Similarity=0.016 Sum_probs=146.2
Q ss_pred EEEECCCCCEEEEec----------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccC-Ccccceeee
Q 011257 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (490)
Q Consensus 40 ~~~~s~dg~~latg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~~ 108 (490)
.++|||||++|+++. .++.|.+||..+.+.. ..+.-- ...+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~-----------------------~~i~~~~~~~~----- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF----- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE-----------------------EEEECCCcccc-----
Confidence 999999999998875 3678999999765532 111000 0000
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeC--cCeEEEEEccCCeEEEE-eeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~--dg~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
........++|+| +|++|+++.. ++.|.++| .+++.... ..... ++.+.|+++.
T Consensus 122 -~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-------------------~~~~~~~~~~ 178 (373)
T 2mad_H 122 -DVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-------------------CYHIHPGAPS 178 (373)
T ss_pred -ccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-------------------eEEEEeCCCc
Confidence 0001134688886 6778888764 57899999 98876554 33221 3345566543
Q ss_pred cccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE-ecCCcEEEEEcCCC
Q 011257 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLWNLEIS 264 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~~wd~~~~ 264 (490)
.+++.+.||.+.+++. .. ...........+ .+.........+.+++..++. ...+.+.+.|+...
T Consensus 179 -----------~~~~~~~dg~~~~vd~-~g-~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 179 -----------TFYLLCAQGGLAKTDH-AG-GAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred -----------eEEEEcCCCCEEEEEC-CC-cEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 3455567788888772 11 111000000000 111111123445666554444 46778999998643
Q ss_pred Cc-eeeeeecCCC---ccCCCCCceEEEEEcCCCCcEEEEEeC----------CCeEEEEeCCCccccccccceeccccC
Q 011257 265 NQ-SFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSS----------KGSIRLIDMRQSALCDTHSKLFEEQEA 330 (490)
Q Consensus 265 ~~-~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 330 (490)
.. ....++.... ...-.......+.++|++ ..++.+.. ++.|.++|..+++.. ..+...
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv----~~i~~g-- 317 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----SQISLG-- 317 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEEE----EEEECC--
Confidence 21 1111111000 000012334558899998 55544432 468999999988753 444332
Q ss_pred CCccccccccccceEEEEECCCCC-EEEEEc--CCeEEEEeccCCCCceeee
Q 011257 331 PGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 331 ~~~~~~~~~h~~~i~~l~~sp~g~-~l~sg~--d~~i~iwd~~~~~~~~~~~ 379 (490)
.....+.|+|||+ .++++. ++.|.++|+.+ ++.+..+
T Consensus 318 -----------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~i 357 (373)
T 2mad_H 318 -----------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQST 357 (373)
T ss_pred -----------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-CCEEeee
Confidence 3478999999999 677664 59999999997 7777663
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.30 E-value=3.1e-10 Score=114.85 Aligned_cols=160 Identities=8% Similarity=0.036 Sum_probs=97.5
Q ss_pred ccceeEEEecCCCCEEEEe-c----CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC---
Q 011257 233 DYHINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--- 304 (490)
Q Consensus 233 ~~~v~~i~~~~~~~~l~~~-~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--- 304 (490)
.....++.|+|||++|+.. . ...|+++|+......... +..+....... +++++..+++....+
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 3446678899999988663 2 358999998755423322 22334444444 566663555555443
Q ss_pred CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE--cCC--eEEEEeccCCCCceeeee
Q 011257 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYM--TLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~d~--~i~iwd~~~~~~~~~~~~ 380 (490)
+.|..+|+.++... ....+..+. ..+. .|++++++|+.. .++ .|++||+. +.....+.
T Consensus 305 ~~l~~~d~~~~~~~--~~~~l~~~~------------~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~ 366 (693)
T 3iuj_A 305 RRLVTVDAANPGPA--HWRDLIPER------------QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVA 366 (693)
T ss_dssp CEEEEEETTSCCGG--GCEEEECCC------------SSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEEC
T ss_pred CEEEEEeCCCCCcc--ccEEEecCC------------CCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEee
Confidence 67999999876421 012333332 3333 889999988875 343 78888887 44444443
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEeecC----CeEEEEecCCCce
Q 011257 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSA 432 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d----g~i~vw~~~~~~~ 432 (490)
..... .+..+.++++++.|+....+ +.|+.||+.+++.
T Consensus 367 ~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 367 LPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred cCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 22111 02356778888876655544 7899999988764
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=2.8e-09 Score=97.29 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=115.0
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC------CCeEE
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIR 308 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~ 308 (490)
.+.+++++++++++++..++ |.+||..+.. ...+... ........+..++++|+| +++++... .+.|.
T Consensus 91 ~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~-~~~~~~~---~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 91 MGSALAKISDSKQLIASDDG-LFLRDTATGV-LTLHAEL---ESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp CEEEEEEEETTEEEEEETTE-EEEEETTTCC-EEEEECS---STTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEE
T ss_pred cceEEEEeCCCeEEEEECCC-EEEEECCCCc-EEEEeeC---CCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEE
Confidence 46778889998877766444 8889987443 2222111 001123468899999999 66665432 24565
Q ss_pred EEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-CCeEEEEecc--CCC-Cce--eeeee
Q 011257 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDIN--MDS-GPV--ATFQV 381 (490)
Q Consensus 309 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d~~i~iwd~~--~~~-~~~--~~~~~ 381 (490)
.+| +++. ..+... ......++|+|||+.|+.+ + ++.|.+||+. + + ... ..+..
T Consensus 165 ~~~--~g~~-----~~~~~~------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~ 224 (326)
T 2ghs_A 165 HVA--KGKV-----TKLFAD------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFID 224 (326)
T ss_dssp EEE--TTEE-----EEEEEE------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEE
T ss_pred EEe--CCcE-----EEeeCC------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEE
Confidence 566 3432 122111 1345789999999877665 3 4899999986 3 3 211 11111
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEc-cCCCCCCCCc
Q 011257 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSRPLGS 460 (490)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~~~~~ 460 (490)
..... .....++++++|++.++...++.|.+|+. +++. +..+..+...+.+++|+ |++.....++
T Consensus 225 ~~~~~------------~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~-~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 225 STGIK------------GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH-IARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CTTSS------------SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE-EEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCC------------CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE-EEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 00000 00237899999998887767789999998 4554 46666677789999998 8876554443
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=5.5e-09 Score=95.38 Aligned_cols=146 Identities=12% Similarity=0.122 Sum_probs=88.5
Q ss_pred ceeEEEecCCCCEEEEe-cC----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEE-EEEeCCCeEE
Q 011257 235 HINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIR 308 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~ 308 (490)
.+.+++++|+|+++++. .+ ....+|.+. .+....+ ..+......++|+|++ +.+ ++.+.++.|.
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~--------~~~~~~~~~i~~s~dg-~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKL--------FADISIPNSICFSPDG-TTGYFVDTKVNRLM 204 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEE--------EEEESSEEEEEECTTS-CEEEEEETTTCEEE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEe--------eCCCcccCCeEEcCCC-CEEEEEECCCCEEE
Confidence 45678889998877664 22 223444433 2332221 1122346789999999 655 5555678999
Q ss_pred EEeCC--Cc-cccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeecc
Q 011257 309 LIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 309 iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
+||+. ++ .... ...+... .........++++++|.+.++. .++.|.+||.. ++.+..+..+..
T Consensus 205 ~~d~~~~~Gl~~~~--~~~~~~~---------~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~~~ 271 (326)
T 2ghs_A 205 RVPLDARTGLPTGK--AEVFIDS---------TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGK 271 (326)
T ss_dssp EEEBCTTTCCBSSC--CEEEEEC---------TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCS
T ss_pred EEEcccccCCcccC--ceEEEEC---------CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECCCC
Confidence 99986 44 3211 0111110 0011346789999999887776 35899999984 666666654432
Q ss_pred ccccccccccCCCccceeeEEEc-CCCCEEEEeec
Q 011257 385 LRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 418 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~ 418 (490)
. +.+++|+ ++++.|+.++.
T Consensus 272 ~---------------~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 Q---------------TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp B---------------EEEEEEESTTSCEEEEEEB
T ss_pred C---------------cEEEEEecCCCCEEEEEec
Confidence 2 4589998 88887655543
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=2.6e-09 Score=100.57 Aligned_cols=261 Identities=9% Similarity=-0.032 Sum_probs=149.8
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
-.....|+|+++|+++++...++.|++||..++.. ..+.... ..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~------------------------~~~~~~~------------~~ 173 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV------------------------TTVHPGF------------KG 173 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE------------------------EEEEETC------------CB
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE------------------------EEeeccC------------CC
Confidence 34688999999999888877789999999876542 1111111 22
Q ss_pred eeEEEEeecCCCcEEEEEeCcC--eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 115 INKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.. ++|.| ++..|+++..++ .|.+|+..++............ ....+..++++|++.
T Consensus 174 ~~-ia~~~--~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~-----------~~~~p~~iav~p~~g-------- 231 (409)
T 3hrp_A 174 GK-PAVTK--DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST-----------FSGKIGAVALDETEE-------- 231 (409)
T ss_dssp CB-CEECT--TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT-----------SCSCCCBCEECTTSS--------
T ss_pred Cc-eeEec--CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch-----------hcCCcEEEEEeCCCC--------
Confidence 33 88876 566888887765 7888888765432222100000 012334788998444
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccce-e-EEEecCCCCEEE-Ee-cCCcEEEEEcCCCCcee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI-N-SISNNSDGETFI-SA-DDLRINLWNLEISNQSF 268 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-~-~i~~~~~~~~l~-~~-~d~~i~~wd~~~~~~~~ 268 (490)
.|+....++.|..|| ......... . .....++...- . .++|+|++..|+ +- ..+.|+.|+.... ..
T Consensus 232 ----~lyv~d~~~~I~~~d-~~~~~~~~~-~--~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~ 301 (409)
T 3hrp_A 232 ----WLYFVDSNKNFGRFN-VKTQEVTLI-K--QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CE 301 (409)
T ss_dssp ----EEEEECTTCEEEEEE-TTTCCEEEE-E--ECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE
T ss_pred ----eEEEEECCCcEEEEE-CCCCCEEEE-e--cccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EE
Confidence 234455678888888 221111000 0 00011221211 3 899999644444 44 6889999987632 21
Q ss_pred eeeecC-CCcc------CCCCCceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccccceeccccC-CCcc--ccc
Q 011257 269 NIVDVK-PANM------EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEA-PGTR--SFF 337 (490)
Q Consensus 269 ~~~~~~-~~~~------~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~--~~~ 337 (490)
.+.... .... ...-.....++++|+| +++++-. .+++|+.||+.++.. .++.++.. .... ...
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTT
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChh
Confidence 111100 0000 0112457899999999 7888877 889999999877653 33333210 0000 000
Q ss_pred cccccceEEEEECCCCCEEEEEc-CCeEEEEec
Q 011257 338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDI 369 (490)
Q Consensus 338 ~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~ 369 (490)
...-.....++++++|.++++-. ++.|+.+++
T Consensus 376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 01114578999999987777754 488888775
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=4.1e-10 Score=103.57 Aligned_cols=178 Identities=9% Similarity=0.104 Sum_probs=120.2
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceee--eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
.+..+++++...++++|....+.+|++........ ..+..+.....+.. |+.++| ++ .+|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 57889999999999998434677798763321000 00001111223456 999999 77 788888 8899999999
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE-EcCCeEEEEeccCCCCceeeeeeeccccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (490)
++.... .....+ ...+.++.+.+.. +++ .+||.|.+||+.. +.... +...
T Consensus 114 ~sl~~~----~~~~~~------------~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~~------ 164 (388)
T 1xip_A 114 EELSEF----RTVTSF------------EKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQN------ 164 (388)
T ss_dssp SSTTCE----EEEEEC------------SSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEES------
T ss_pred hhhhcc----Ccccee------------ecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccCC------
Confidence 875421 222222 2457777777543 555 4779999999985 55432 1111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCcee-eeEe------c---cCCCceEEEEEccCCCCCC
Q 011257 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-~~~~------~---~~~~~v~~~~~sp~~~~~~ 457 (490)
|.+++|||+| ++.|..||.+++|+...++.. ..++ . +|...|.++.|.+++....
T Consensus 165 ---------Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 165 ---------VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp ---------EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred ---------ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 5699999999 678899999999998877631 2344 3 4778999999999776543
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.23 E-value=9.5e-10 Score=112.40 Aligned_cols=225 Identities=9% Similarity=0.006 Sum_probs=134.1
Q ss_pred ceEEeccCCccccccccCCCCccccCCC-C----CcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEE
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGG-V----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~-~----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 250 (490)
.++|||||+ +|+.+.. . ..|++||+ ...+. .... .+...+..++|+|| +.|+.
T Consensus 167 ~~~~SPDG~------------~la~~~~~~G~e~~~i~v~dl-~tg~~------~~~~--~~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 167 AWAASDDGR------------LLAYSVQDGGSDWRTVKFVGV-ADGKP------LADE--LKWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp EEEECTTSS------------EEEEEEEETTCSEEEEEEEET-TTCCE------EEEE--EEEEESCCCEESTT-SEEEE
T ss_pred eEEECCCCC------------EEEEEEcCCCCceEEEEEEEC-CCCCC------CCcc--CCCceeccEEEECC-CEEEE
Confidence 679999999 4543322 2 46999982 22211 1111 11122357889999 88887
Q ss_pred e-cCC--------------cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC-----eEEEE
Q 011257 251 A-DDL--------------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-----SIRLI 310 (490)
Q Consensus 251 ~-~d~--------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~iw 310 (490)
+ .+. .|++|++.+....-.++ .....+...+..+.|+||| ++|+..+.++ .|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv----~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV----FATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEE----ECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEE
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEE----eccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEE
Confidence 6 443 38899987543211111 0123334458899999999 7777766543 89999
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-----CCeEEEEeccCCC-Cceeeeeeecc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-----YMTLKLWDINMDS-GPVATFQVHEH 384 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-----d~~i~iwd~~~~~-~~~~~~~~~~~ 384 (490)
|+.++... ....+..+. ..+... ++|+|+.|+..+ .+.|.+||+.. + .....+..+..
T Consensus 300 d~~~~~~~--~~~~l~~~~------------~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~l~~~~~ 363 (741)
T 1yr2_A 300 RVTNGKIG--PVTALIPDL------------KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG-STPRFDTVVPESK 363 (741)
T ss_dssp EEETTEEC--CCEEEECSS------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS-SSCEEEEEECCCS
T ss_pred ECCCCCCc--ccEEecCCC------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-CccccEEEecCCC
Confidence 98875210 012333222 233333 348888887653 25699999875 3 23333332221
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecC-CCceeeeEecc-CCCceEEEEEccCCCCCCCC
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~-~~~~v~~~~~sp~~~~~~~~ 459 (490)
.. +..++|+ ++.++++...|+..+||.+. +++. ...+.. ....+..+.++|+++....+
T Consensus 364 ~~--------------l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 364 DN--------------LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP-AGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp SE--------------EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE-EEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred Ce--------------EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc-eeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 10 2367777 66778888899987777665 3443 355554 35678899999998765543
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.23 E-value=3.7e-10 Score=103.86 Aligned_cols=215 Identities=12% Similarity=0.116 Sum_probs=131.4
Q ss_pred cccccccccccccccc-cccccccccccccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecC
Q 011257 9 EAAAQPLEWKFSQVFG-ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRH 87 (490)
Q Consensus 9 ~~~~~~~~w~~~~~~~-~~~~~~~~~h~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 87 (490)
|...+.+.||+..-.- =+...+.+ -..+++.+++++...++++|+.+ .+++|++...+..
T Consensus 11 ~~~ted~~Fk~l~~~~~~~~~~~~l-~~~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~----------------- 71 (388)
T 1xip_A 11 TETSEDFGFKFLGQKQILPSFNEKL-PFASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH----------------- 71 (388)
T ss_dssp EEEESSCEEEEEEEEECSCCCTTCC-CSSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH-----------------
T ss_pred ceeccccceEECCccccccCccccC-CcccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh-----------------
Confidence 4455666777653100 01111112 23379999999999999999988 5666998753310
Q ss_pred CccccccccccCCcccceeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCc
Q 011257 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (490)
Q Consensus 88 p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (490)
+.....++......++.. |+.|+| ++..|+++ .++.|++||+.+.......
T Consensus 72 --------~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~--------------- 122 (388)
T 1xip_A 72 --------ITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV--------------- 122 (388)
T ss_dssp --------HHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE---------------
T ss_pred --------hccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc---------------
Confidence 000000011112223336 999999 45688888 8899999999875422111
Q ss_pred cccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCE
Q 011257 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (490)
Q Consensus 168 ~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 247 (490)
..|...+.++.+.+..
T Consensus 123 --------------------------------------------------------------~~~~~~v~~i~~~~p~-- 138 (388)
T 1xip_A 123 --------------------------------------------------------------TSFEKPVFQLKNVNNT-- 138 (388)
T ss_dssp --------------------------------------------------------------EECSSCEEEEEECSSE--
T ss_pred --------------------------------------------------------------ceeecceeeEEecCCC--
Confidence 0111223444444332
Q ss_pred EEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 248 l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
++++ .||.+.+||+..... .. +...|++++|+|+| ++.|..||++++|+....+... .+++.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~-~~-----------~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~--k~~I~ 201 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKST-KQ-----------LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEK--QFEFS 201 (388)
T ss_dssp EEEEETTSEEEEEETTTCCE-EE-----------EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEE--EEEEC
T ss_pred EEEEECCCCEEEEEccCCcc-cc-----------ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccc--cceec
Confidence 6666 899999999984432 21 34579999999998 6778999999999887654200 02221
Q ss_pred cccCCCcccccc---ccccceEEEEECCCCCEEEE
Q 011257 327 EQEAPGTRSFFT---EIIASISDIKFARNGRHILS 358 (490)
Q Consensus 327 ~~~~~~~~~~~~---~h~~~i~~l~~sp~g~~l~s 358 (490)
... .+. +|...|.+|+|.+++.++++
T Consensus 202 ~Pp------~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 202 LPS------ELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CCH------HHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCc------ccccccCCCeeEEEEEEecCCeEEEE
Confidence 110 011 24478999999999999987
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=3.2e-09 Score=97.68 Aligned_cols=265 Identities=6% Similarity=-0.015 Sum_probs=154.0
Q ss_pred ccEEEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
..+..++++++|+++++.. .++.++||.+.+++.. .| |+.. ....+|. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~--------------~~-p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI--------------PF-PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE--------------ES-CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee--------------cC-CCcc--cCcccce------------e
Confidence 5789999999999988853 2344677776532210 00 1100 0111232 5
Q ss_pred ceeEEEEeecCCCcEEEEEeC-----cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
.+..|++.| ++.++++-.. ++.|.+||+.+++..........
T Consensus 68 ~p~gv~~d~--~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------------------------------- 114 (343)
T 2qe8_A 68 TVLGIKSDG--NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------------------------------- 114 (343)
T ss_dssp CEEEEEECS--SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------------------------------
T ss_pred EeeEEEEcC--CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------------------------------
Confidence 689999985 4555554433 57899999998875543332110
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-----cCCcEEEEEcCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEI 263 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d~~i~~wd~~~ 263 (490)
...+...+..+++++++..++.+ .++.|.+||+.+
T Consensus 115 ----------------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 115 ----------------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp ----------------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred ----------------------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 00111334678888765444443 367899999974
Q ss_pred CCceeeeeecCCCccCCCCCce-EEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccccccc
Q 011257 264 SNQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 342 (490)
. ...+.+ .+|.... ....+.+++ ..+.+...++.++.|. .
T Consensus 155 g-~~~r~~-------~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~------------------------------~ 195 (343)
T 2qe8_A 155 G-LAARVL-------QGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH------------------------------L 195 (343)
T ss_dssp C-CEEEEC-------TTCTTTSCCSCCCEETT-EECBEECTTSCEECCC------------------------------C
T ss_pred C-CEEEEe-------cCCCcccccccceeECC-EEEEeccCCCceecee------------------------------c
Confidence 3 343332 2221110 013345566 6777777777765542 1
Q ss_pred ceEEEEECCCCCEEEEEc-C-CeEEEEeccC--CCCc-----ee--eeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 343 SISDIKFARNGRHILSRD-Y-MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~-d-~~i~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
.+..++|+|||+.|+.++ . ..+..++... .+.. .. ...++... ...++++++|+
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~ 260 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHN 260 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCC
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCC
Confidence 257799999999888764 3 4555555321 0110 00 01111111 12789999999
Q ss_pred EEEEeecCCeEEEEecCCCceeeeEecc-CCCceEEEEEccCCCCCC
Q 011257 412 RVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~~ 457 (490)
++++...++.|.+||.++|+.. ..... +.....+++|.+++....
T Consensus 261 l~va~~~~~~V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g~l~v 306 (343)
T 2qe8_A 261 IYVGDLAHSAIGVITSADRAYK-LLVTDEKLSWTDSFNFGSDGYLYF 306 (343)
T ss_dssp EEEEEGGGTEEEEEETTTTEEE-EEEECGGGSCEEEEEECTTSCEEE
T ss_pred EEEEccCCCeEEEEECCCCCEE-EEEECCceecCCeeEECCCCcEEE
Confidence 9999888999999998566542 22222 245688999999876443
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=4.9e-09 Score=96.18 Aligned_cols=266 Identities=9% Similarity=-0.013 Sum_probs=150.1
Q ss_pred EEEEeecCCCcEEEEEe----------CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
.+.++| ++.+++++. .++.|.+||+.+++............ +.....|..++++|||+
T Consensus 69 ~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~--------~~~g~~P~~ia~SpDGk-- 136 (368)
T 1mda_H 69 LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------FSVGPRVHIIGNCASSA-- 136 (368)
T ss_dssp EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--------CCBSCCTTSEEECTTSS--
T ss_pred ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--------cccCCCcceEEEcCCCC--
Confidence 688886 666777765 47899999999998877665441100 00002244889999999
Q ss_pred ccccccCCCCccccCCC--CCcEEE--eeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEE
Q 011257 187 ERNFGCASNDSSFPPGG--VSSLRL--PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 260 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~--~g~v~i--w~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd 260 (490)
+++++.. +..+.+ +|... .+.+..+ . ++.+.|+++..+.. .|+.+.+.+
T Consensus 137 ----------~lyVan~~~~~~v~V~~iD~~t----------v~~i~v~--~---~~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 137 ----------CLLFFLFGSSAAAGLSVPGASD----------DQLTKSA--S---CFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ----------CEEEEECSSSCEEEEEETTTEE----------EEEEECS--S---CCCCEEEETTEEECCCCTTSCEEEE
T ss_pred ----------EEEEEccCCCCeEEEEEEchhh----------ceEEECC--C---ceEEccCCCeEEEEEcCCCCEEEEE
Confidence 5665543 456777 87211 1111000 0 11234554433333 677777778
Q ss_pred cCC----CCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccc
Q 011257 261 LEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 336 (490)
Q Consensus 261 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (490)
+.. .++..... ...+.-...+. . .+++ ..++..+. +.+.+.|....... .+..+...... ...
T Consensus 192 ~~~~~~~~~~v~~~~---t~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~--~~~ 258 (368)
T 1mda_H 192 LAAAPAAAGIVGAQC---TGAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESG--RKA 258 (368)
T ss_dssp CCSSCCCCEECCCCS---CTTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTH--HHH
T ss_pred CccccccCCeEEEEe---eeeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcce--EEEEEEecccc--ccc
Confidence 774 12211000 00111122333 3 6666 45555556 99999998754211 01111110000 000
Q ss_pred ccccccceEEEEECCCCCEEEEE-c-C--------CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEE
Q 011257 337 FTEIIASISDIKFARNGRHILSR-D-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (490)
Q Consensus 337 ~~~h~~~i~~l~~sp~g~~l~sg-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (490)
..........++++||++.++.+ . . +.+.++|+.+ .+.+..+...... ..++|
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~ 321 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIA 321 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEE
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEE
Confidence 00000122236899999888764 2 2 3566999998 8888888766533 38999
Q ss_pred cCCCCE-EEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 407 SGDGGR-VATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 407 s~d~~~-l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
+|||+. +++.. .++.|.|+|+.+++. +.++..... ...+++.+
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kv-v~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQD-QSSVELDKG-PESLSVQN 366 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEE-EEECCCCSC-CCEEECCC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcE-EEEEECCCC-CCEEEeec
Confidence 999984 55555 589999999999987 577765543 44555543
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.20 E-value=1.9e-09 Score=100.60 Aligned_cols=258 Identities=10% Similarity=0.094 Sum_probs=143.3
Q ss_pred EEEECCCCCEEEEec----------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccC-Ccccceeee
Q 011257 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (490)
Q Consensus 40 ~~~~s~dg~~latg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~~ 108 (490)
.+++||||++|+++. .++.|.++|..+.+.+ ..+.-- ...+
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv-----------------------~~I~v~g~~r~----- 173 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF----- 173 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE-----------------------EEEEETTCCCC-----
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE-----------------------EEEECCCcccc-----
Confidence 899999999888876 3678999999877632 111100 0000
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeC--cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcc
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~ 186 (490)
........++|+| +|++++++.. ++.|.+.|+.+++......... +....|+|+.
T Consensus 174 -~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-------------------~~~~~p~g~~- 230 (426)
T 3c75_H 174 -LVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-------------------CYHIFPASPT- 230 (426)
T ss_dssp -CBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------------------EEEEEEEETT-
T ss_pred -ccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-------------------ceeeccCCCc-
Confidence 0001123477875 7778888764 5899999999998776554421 1112222221
Q ss_pred ccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC
Q 011257 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~ 265 (490)
.+++.+.||.+.+.+. .......... ..+..+.......+.+.+++..++.. ..+.+.+.|.....
T Consensus 231 ----------~~v~~~~dG~~~~V~~-~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 231 ----------VFYMNCRDGSLARVDF-ADGETKVTNT--EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp ----------EEEEEETTSSEEEEEC-CTTCCEEEEC--CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred ----------EEEEEcCCCCEEEEEC-CCCcEEEEee--eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 2222233333333331 0000000000 00000111111235678888877666 77889999986433
Q ss_pred cee-eeeecCC-Cc--cCCCCCceEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCccccccccceeccccCCC
Q 011257 266 QSF-NIVDVKP-AN--MEDLTEVITSAEFHPTHCNMLAYSS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 266 ~~~-~~~~~~~-~~--~~~~~~~v~~~~~~p~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
... ..+.... .. ..........++++|++.+++++.. .++.|.++|..+.+.. ..+...
T Consensus 298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----~~I~vg---- 369 (426)
T 3c75_H 298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----NKIELG---- 369 (426)
T ss_dssp EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEEE----
T ss_pred eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE----EEEECC----
Confidence 111 1110000 00 0001112223689999844444433 1357999999998753 444432
Q ss_pred ccccccccccceEEEEECCCCC-EEEEEc--CCeEEEEeccCCCCceeee
Q 011257 333 TRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~-~l~sg~--d~~i~iwd~~~~~~~~~~~ 379 (490)
.....+.|+|||+ ++++.. ++.|.++|+.+ .+.+.++
T Consensus 370 ---------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI 409 (426)
T 3c75_H 370 ---------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV 409 (426)
T ss_dssp ---------EEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred ---------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence 3478899999999 787764 59999999998 8888776
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=3.5e-08 Score=91.02 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEE--cCCCCcEEEEEe-----CCCeEEEEeCCCcccccccccee
Q 011257 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSS-----SKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 253 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
+..|.+||+.+ .+....++ +.........+.| +|++...++++. .+++|.+|....++.. ....+
T Consensus 227 ~d~V~v~D~~~-~k~~~tI~-----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vI 298 (462)
T 2ece_A 227 GNRIHFWDLRK-RKRIHSLT-----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVI 298 (462)
T ss_dssp CCEEEEEETTT-TEEEEEEE-----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEE
T ss_pred CCEEEEEECCC-CcEeeEEe-----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee--EEEEE
Confidence 68899999985 44444432 2111233455655 999944444555 6778887766544311 11111
Q ss_pred ccccC--CCcc----ccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCC--ceeeeeeeccccccccccccC
Q 011257 326 EEQEA--PGTR----SFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYEN 395 (490)
Q Consensus 326 ~~~~~--~~~~----~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 395 (490)
..... .... .-+.+-......|.+||||++|.++. .+.|.+||+...+. .+..+...... ...... ..
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~-~G 376 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRADHP-AG 376 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBCCT-TS
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-cccccc-cc
Confidence 11100 0000 00000013478899999999999874 39999999864232 23333222100 000000 00
Q ss_pred CCc-cceeeEEEcCCCCEEEEee
Q 011257 396 DSI-FDKFECCLSGDGGRVATGS 417 (490)
Q Consensus 396 ~~~-~~v~~~~~s~d~~~l~s~~ 417 (490)
..+ ..=..++++|||++|+++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 000 0002799999999998887
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.07 E-value=1.5e-08 Score=102.53 Aligned_cols=165 Identities=9% Similarity=0.069 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCC-CCCceEEEEEcCCCCcEEE-EEeC---CCeEEEEeCCCccccccccceeccc
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLA-YSSS---KGSIRLIDMRQSALCDTHSKLFEEQ 328 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~-~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~ 328 (490)
..|++|++.+....-..+ ..... |......+.|+||| ++|+ +... +..|+++|+.++... ...+..+
T Consensus 208 ~~v~~~~lgt~~~~~~~v----~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~~---~~~l~~~ 279 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLV----FGAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENAP---LLTVQGD 279 (693)
T ss_dssp CEEEEEETTSCGGGCEEE----ESCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTCC---CEEEECS
T ss_pred cEEEEEECCCCcccceEE----EecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCCc---eEEEeCC
Confidence 458899987554321111 02233 44557889999999 6554 4332 358999999876321 2333333
Q ss_pred cCCCccccccccccceEEEEECCCCCEEEE-Ec-C---CeEEEEeccCCCCc--eeeeeeeccccccccccccCCCccce
Q 011257 329 EAPGTRSFFTEIIASISDIKFARNGRHILS-RD-Y---MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDK 401 (490)
Q Consensus 329 ~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s-g~-d---~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (490)
. ...... |+++|..|+. .+ + +.|..+|+.. +.. ...+..+... +
T Consensus 280 ~------------~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~---------------~ 330 (693)
T 3iuj_A 280 L------------DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-PGPAHWRDLIPERQQ---------------V 330 (693)
T ss_dssp S------------SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-CCGGGCEEEECCCSS---------------C
T ss_pred C------------CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-CCccccEEEecCCCC---------------E
Confidence 2 233333 6666666554 32 2 6899999985 433 3445444433 2
Q ss_pred eeEEEcCCCCEEEEeec-CC--eEEEEecCCCceeeeEec-cCCCceEEEEEccCCCCCCCC
Q 011257 402 FECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 402 ~~~~~s~d~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~~~~ 459 (490)
+.|++++++|+.... ++ .|++|++..+.. ..+. .....+..+.++|++....+.
T Consensus 331 --~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~--~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 331 --LTVHSGSGYLFAEYMVDATARVEQFDYEGKRV--REVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp --EEEEEETTEEEEEEEETTEEEEEEECTTSCEE--EEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred --EEEEEECCEEEEEEEECCeeEEEEEECCCCee--EEeecCCCceEEeeecCCCCCEEEEE
Confidence 289999998877665 44 689999885543 3333 234567777777877765544
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.07 E-value=1.5e-07 Score=94.51 Aligned_cols=192 Identities=8% Similarity=0.021 Sum_probs=116.5
Q ss_pred eEEEecCCCCEEEEe-cCC-------------------cEEEEEcCCCCceeeeeecCCCccCCC-------CCceEEEE
Q 011257 237 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDL-------TEVITSAE 289 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~-~d~-------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~ 289 (490)
..++++|++..++.+ .++ .|..+|..+++.....- ...| ......+.
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~------~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ------ETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCCEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe------cCCCcccccccCCCcEEEe
Confidence 357888988888887 443 48999998766554431 1112 12223334
Q ss_pred EcCCCC--cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCc-------c--------------cc---ccccccc
Q 011257 290 FHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-------R--------------SF---FTEIIAS 343 (490)
Q Consensus 290 ~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~--------------~~---~~~h~~~ 343 (490)
...+|. ..++.++.+|.++++|..+++.+.. +.....+.. + .. ..+...
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~- 394 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA----KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN- 394 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEE----EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEecc----ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-
Confidence 444552 4788899999999999999986432 111000000 0 00 000000
Q ss_pred eEEEEECCCCCEEEEE-c-------------------------------------------CCeEEEEeccCCCCceeee
Q 011257 344 ISDIKFARNGRHILSR-D-------------------------------------------YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 344 i~~l~~sp~g~~l~sg-~-------------------------------------------d~~i~iwd~~~~~~~~~~~ 379 (490)
-..++++|++.++++. . .+.|..||+.+ ++.+-.+
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~ 473 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSV 473 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeec
Confidence 1257889988877763 1 16799999987 7766655
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEec-cCCCceEEEEEccCCCCCC
Q 011257 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~~ 457 (490)
..... ++...++.++.+++.++.||.+++||.++|+. +..+. ++.....-+.+.++|+...
T Consensus 474 ~~~~~----------------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 474 EHVSP----------------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EESSS----------------CCCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCC----------------CcCcceEeCCCEEEEECCCCcEEEEECCCCce-eeeeeCCCCcccCCEEEEeCCEEEE
Confidence 43321 12455677888899999999999999999988 45554 3322333455667775443
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=2.4e-07 Score=93.24 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=117.0
Q ss_pred EEEecCCCCEEEEe-cCC-------------------cEEEEEcCCCCceeeeeecCCCcc-C-CCCCceEEEEEcCCCC
Q 011257 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANM-E-DLTEVITSAEFHPTHC 295 (490)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~-------------------~i~~wd~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~p~~~ 295 (490)
.++++|+..+++.+ .++ .|..+|..+++.....- ..+... . .....+.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee-cCCcccccccCCCCcEEEeeccCC-
Confidence 57888988888888 555 39999999776654431 100000 0 011222222333355
Q ss_pred c---EEEEEeCCCeEEEEeCCCccccccccc---eecccc------------------CCCcccccc---ccccceEEEE
Q 011257 296 N---MLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQE------------------APGTRSFFT---EIIASISDIK 348 (490)
Q Consensus 296 ~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~------------------~~~~~~~~~---~h~~~i~~l~ 348 (490)
. .++.++.+|.++++|.++++.+...-. .+..+. ......... +. ..-..++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg-~~w~~~a 395 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA-HDWQPMS 395 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS-SCSSCCE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc-cCCCcce
Confidence 4 788999999999999999986421000 000000 000000000 00 0112378
Q ss_pred ECCCCCEEEEE-c---------------------------------------------CCeEEEEeccCCCCceeeeeee
Q 011257 349 FARNGRHILSR-D---------------------------------------------YMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 349 ~sp~g~~l~sg-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
|+|+..++++. . +|.|..||+.+ ++.+-.+..+
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~ 474 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYV 474 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEES
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCC
Confidence 88887777653 1 26788899987 7766666554
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCC-CceEEEEEccCCCCCCC
Q 011257 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~~~ 458 (490)
... ....++..+.+++.|+.||.|+.||.++|+. +..++... ....-+.|+.+|+....
T Consensus 475 ~~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 475 TIF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEK-LWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCc----------------cCccceECCCEEEEECCCCcEEEEECCCCcc-ceeeeCCCCcccCceEEEECCEEEEE
Confidence 322 1345666888999999999999999999988 45554432 22244667777764433
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.03 E-value=3.6e-08 Score=89.07 Aligned_cols=220 Identities=5% Similarity=-0.037 Sum_probs=135.6
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (490)
.+.|+|+|+. ++++...++.|..|+ .. .. ...+ ..+...+..++++++|+++++. .++
T Consensus 49 gp~~~~~g~~-----------l~~~d~~~~~i~~~~-~~---g~-----~~~~-~~~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 49 GPAWWEAQRT-----------LVWSDLVGRRVLGWR-ED---GT-----VDVL-LDATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp EEEEEGGGTE-----------EEEEETTTTEEEEEE-TT---SC-----EEEE-EESCSCEEEEEECTTSCEEEEETTTT
T ss_pred CCeEeCCCCE-----------EEEEECCCCEEEEEe-CC---CC-----EEEE-eCCCCccceeeECCCCCEEEEECCCC
Confidence 5688999884 566777888898887 21 11 1111 2334567899999999977776 568
Q ss_pred cEEEEEcCCCCceeeeeecCCCccCC-CCCceEEEEEcCCCCcEEEE----EeC-------------CCeEEEEeCCCcc
Q 011257 255 RINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAY----SSS-------------KGSIRLIDMRQSA 316 (490)
Q Consensus 255 ~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~----~~~-------------dg~i~iwd~~~~~ 316 (490)
.|..|+.. .. ...+.. ...+ ....+..++++|+| +++++ |.. .+.|..||..+++
T Consensus 108 ~v~~~~~~-g~-~~~~~~----~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 108 AITRSDAD-GQ-AHLLVG----RYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp EEEEECTT-SC-EEEEEC----EETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred EEEEECCC-CC-EEEEEe----ccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 89999975 32 222211 0111 12346789999999 77776 332 2567777776665
Q ss_pred ccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cC------CeEEEEeccCCCCceeeeeeeccccccc
Q 011257 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY------MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
.. .+. .. .....++|+||++.|+.+ +. +.|.+|++.. .. +..........
T Consensus 181 ~~-----~~~-~~------------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~-~~-l~~~~~~~~~~--- 237 (305)
T 3dr2_A 181 LQ-----RMA-DL------------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD-GA-LHDRRHFASVP--- 237 (305)
T ss_dssp CE-----EEE-EE------------SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-TE-EEEEEEEECCS---
T ss_pred EE-----EEe-cC------------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-CC-ccCCeEEEECC---
Confidence 32 111 11 346789999999977765 33 6899999875 32 22111111000
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
... ...++++++|++.++. .+ .|.+|+.. ++. +..+..+. .+..++|+|++.....+
T Consensus 238 -----~~~---pdgi~~d~~G~lwv~~-~~-gv~~~~~~-g~~-~~~~~~~~-~~~~~~f~~d~~~L~it 294 (305)
T 3dr2_A 238 -----DGL---PDGFCVDRGGWLWSSS-GT-GVCVFDSD-GQL-LGHIPTPG-TASNCTFDQAQQRLFIT 294 (305)
T ss_dssp -----SSC---CCSEEECTTSCEEECC-SS-EEEEECTT-SCE-EEEEECSS-CCCEEEECTTSCEEEEE
T ss_pred -----CCC---CCeEEECCCCCEEEec-CC-cEEEECCC-CCE-EEEEECCC-ceeEEEEeCCCCEEEEE
Confidence 000 1268999999965544 44 49999985 544 45555554 58899999877644433
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=1.8e-08 Score=92.65 Aligned_cols=233 Identities=11% Similarity=0.071 Sum_probs=135.3
Q ss_pred cccccEEEEEECCCCCEEEEecC-----CCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceee
Q 011257 33 QEVDIISAIEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (490)
Q Consensus 33 ~h~~~V~~~~~s~dg~~latg~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~ 107 (490)
.|...+..++|+++|+++++-.. ++.|.+||..+++.... +.+ ......+.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~-----------~~~------~~~~~~~~------- 119 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRV-----------IYL------PPPITLSN------- 119 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEE-----------EEC------CTTTSCTT-------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEE-----------EEC------Chhhcccc-------
Confidence 45678999999999986665433 57899999876652100 000 00000111
Q ss_pred eeeeccceeEEEEeecCCCcEEEEEe---CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 108 SLEIEEKINKIRWCQSANSALYLLST---NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 108 ~~~~~~~V~~v~~~p~~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
..++.+++.|. ++..+++-. .++.|.+||+.+++.......+... .+....+.++|+
T Consensus 120 -----~~~~~v~vd~~-~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~--------------~~~~~~~~~~g~ 179 (343)
T 2qe8_A 120 -----SFVNDLAVDLI-HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI--------------APEDIDLVIDGV 179 (343)
T ss_dssp -----CCCCEEEEETT-TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT--------------SCCSCCCEETTE
T ss_pred -----cccceEEEecC-CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc--------------cccccceeECCE
Confidence 34678899862 234445554 6889999999988765543221000 000123444554
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c-CCcEEEEEcC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLE 262 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~~wd~~ 262 (490)
.+.....++.++.|. ..+..|+|+|+++.|+.+ . ...+..++..
T Consensus 180 ------------~~~~~~~~g~~~~~~----------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~ 225 (343)
T 2qe8_A 180 ------------PVQIGQPDGTVIRPH----------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSA 225 (343)
T ss_dssp ------------ECBEECTTSCEECCC----------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred ------------EEEeccCCCceecee----------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence 344445556665553 245789999999988887 4 3455555432
Q ss_pred C--CCce--eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCcccccc
Q 011257 263 I--SNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 338 (490)
Q Consensus 263 ~--~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (490)
. .... .++. ......++......++++++| .++++...++.|.+||..+++. ..+....
T Consensus 226 ~~~~~~~~~~~~~--~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~-----~~~~~~~--------- 288 (343)
T 2qe8_A 226 DLSNLQLTDAELG--SKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAY-----KLLVTDE--------- 288 (343)
T ss_dssp HHTCTTCCHHHHH--TTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEE-----EEEEECG---------
T ss_pred HhcCCCCChhhhh--cceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCE-----EEEEECC---------
Confidence 1 0000 0000 000011223355679999999 8999999999999999855542 1121110
Q ss_pred ccccceEEEEECCCCCEEEEEcC
Q 011257 339 EIIASISDIKFARNGRHILSRDY 361 (490)
Q Consensus 339 ~h~~~i~~l~~sp~g~~l~sg~d 361 (490)
+.....+++|.++|+++++.+.
T Consensus 289 -~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 289 -KLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -GGSCEEEEEECTTSCEEEEECC
T ss_pred -ceecCCeeEECCCCcEEEEeCc
Confidence 1145789999999988887654
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=3.2e-07 Score=84.64 Aligned_cols=287 Identities=10% Similarity=-0.004 Sum_probs=154.4
Q ss_pred eEEEEEccC-----CeEEEEeeeccCCCcCCCCCCccccccccCceEEe--ccCCccccccccCCCCccccCCCCCcEEE
Q 011257 137 TIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCGERNFGCASNDSSFPPGGVSSLRL 209 (490)
Q Consensus 137 ~i~lwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~g~~~~~~~~~~~~~~l~~~~~~g~v~i 209 (490)
.+.+-|++. +++..............+.++ +..+++....++ ++++. +++.+..++.|.+
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gw--n~css~~~~~~~~~~~r~~-----------l~v~~l~s~~I~v 110 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGW--NACSSALCPNGKPNIERRF-----------LIVPGLRSSRIYI 110 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEE--SCCGGGGSTTCCTTCCSCE-----------EEEEBTTTCCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccch--hhhhhhcccccCCCccCCE-----------EEEccCCCCeEEE
Confidence 455666664 555555555432222222222 111222233445 66663 5567788899999
Q ss_pred eeeecccccccccceee--eec-cccccceeEEEecCCCCEEEEe-cC------CcEEEEEcCCCCceeeeeecCCCccC
Q 011257 210 PVVVTSQETNLVAGCRR--IYA-HAHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANME 279 (490)
Q Consensus 210 w~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~i~~~~~~~~l~~~-~d------~~i~~wd~~~~~~~~~~~~~~~~~~~ 279 (490)
+|+..........+... .+. +.-......+...|+| +++++ .+ +.|.++|.++.+ ....+. ..
T Consensus 111 iD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~-v~~~~~-----~~ 183 (462)
T 2ece_A 111 IDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE-PLGKWE-----ID 183 (462)
T ss_dssp EECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC-EEEECC-----SB
T ss_pred EECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe-EEEEEc-----cC
Confidence 99322211111111110 000 0011234567788999 77775 44 789999998544 433331 11
Q ss_pred CCC-CceEEEEEcCCCCcEEEEEe-------------------CCCeEEEEeCCCccccccccceeccccCCCccccccc
Q 011257 280 DLT-EVITSAEFHPTHCNMLAYSS-------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 280 ~~~-~~v~~~~~~p~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
... ..-..+.|+|++ +.+++.. .+.+|.+||+.+++.. .++.....
T Consensus 184 ~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~vg~~--------- 249 (462)
T 2ece_A 184 RGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTLGEE--------- 249 (462)
T ss_dssp CTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEESCTT---------
T ss_pred CCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe----eEEecCCC---------
Confidence 111 223468889999 7888774 3789999999986532 33433110
Q ss_pred cccceEEEEE--CCCCCEEEEE-c-----C-CeEEEEeccCCCCceeeeee---ecc-ccccccccccC-CC-ccceeeE
Q 011257 340 IIASISDIKF--ARNGRHILSR-D-----Y-MTLKLWDINMDSGPVATFQV---HEH-LRPKLCDLYEN-DS-IFDKFEC 404 (490)
Q Consensus 340 h~~~i~~l~~--sp~g~~l~sg-~-----d-~~i~iwd~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-~~-~~~v~~~ 404 (490)
......+.| +|+++++..+ . . ++|.+|..+. +. ....+. ... ....+..+... .. -.....+
T Consensus 250 -g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 250 -NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp -EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred -CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Cc-eeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 023455656 9999988764 3 4 7888888763 32 221111 110 00000000000 00 0012489
Q ss_pred EEcCCCCEEEEeec-CCeEEEEecCCCc-e-eeeEeccCC--------------CceEEEEEccCCCCCCCCc
Q 011257 405 CLSGDGGRVATGSY-SNLFRVFGCSEGS-A-ESTTLEASK--------------NPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 405 ~~s~d~~~l~s~~~-dg~i~vw~~~~~~-~-~~~~~~~~~--------------~~v~~~~~sp~~~~~~~~~ 460 (490)
.+|+||++|.++.. .+.|.+||+.... . ++..+.... ..-+.++++|||+.+..++
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999887775 6899999986332 1 122232210 1358899999998777665
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.95 E-value=3.1e-06 Score=74.62 Aligned_cols=177 Identities=10% Similarity=0.046 Sum_probs=105.6
Q ss_pred ceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC--CCeEEEE
Q 011257 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 310 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~iw 310 (490)
....+++++++..|+.+ ..+.|.++++..... ..+. .........++++|++..++++... .+.|..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 34678888876655555 578899999873322 1111 1112456899999965245555433 4688888
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeecccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (490)
++..... ..+.... ......++++|++..|..++ .+.|.++|+.. ......+.....
T Consensus 152 ~~dg~~~-----~~~~~~~-----------~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~---- 210 (267)
T 1npe_A 152 HMDGTNR-----RILAQDN-----------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQY---- 210 (267)
T ss_dssp ETTSCCC-----EEEECTT-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCS----
T ss_pred ecCCCCc-----EEEEECC-----------CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCC----
Confidence 8764321 1221110 13468899999887776653 38999999873 222222211100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCceeeeEeccCC-CceEEEEEccCCCC
Q 011257 389 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPS 455 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~ 455 (490)
-..++.. +..|..+. ..+.|.++|..+++. +..+.... .....+++.|++-+
T Consensus 211 ------------P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~-~~~i~~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 211 ------------PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE-MDTFHPHKQTRLYGITIALSQCP 264 (267)
T ss_dssp ------------EEEEEEE--TTEEEEEETTTTEEEEEETTTTEE-EEEECCSSCCCCCCEEEECSCC-
T ss_pred ------------ceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc-eEEEccccccccceeeecCccCC
Confidence 1255554 44444444 568999999998876 45555433 24788899988753
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.94 E-value=3.5e-08 Score=90.48 Aligned_cols=256 Identities=10% Similarity=0.062 Sum_probs=140.1
Q ss_pred EEEECCCCCEEEEec----------CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccC-Ccccceeee
Q 011257 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (490)
Q Consensus 40 ~~~~s~dg~~latg~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h-~~~~~~~~~ 108 (490)
.+.|+|||++++++. .++.|.+||..+.+.+ ..+.-. ...+.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~~---- 121 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRFS---- 121 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSCC----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCccccc----
Confidence 799999999888885 3678999999987732 221110 00000
Q ss_pred eeeccceeEEEEeecCCCcEEEEEeC--cCeEEE--EEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 109 ~~~~~~V~~v~~~p~~~~~~l~~~~~--dg~i~l--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
.......++++| +|++++++.. +..+.+ +|+.+ ... ..... +..+.|+|+
T Consensus 122 --~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t--v~~-i~v~~-------------------~~~~~p~g~ 175 (368)
T 1mda_H 122 --VGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD--DQL-TKSAS-------------------CFHIHPGAA 175 (368)
T ss_dssp --BSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE--EEE-EECSS-------------------CCCCEEEET
T ss_pred --cCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh--ceE-EECCC-------------------ceEEccCCC
Confidence 001134588886 6778888764 467888 88877 222 22111 122345555
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeec----ccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEE
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVT----SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW 259 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~----~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~w 259 (490)
. .+++.+.|+.+.+.++.. .... .......+ .-...+. . .+++..++.. . +.+.+.
T Consensus 176 ~-----------~~~~~~~dg~~~~vd~~~~~~~~~~v--~~~~t~~i-~vg~~P~---~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 176 A-----------THYLGSCPASLAASDLAAAPAAAGIV--GAQCTGAQ-NCSSQAA---Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp T-----------EEECCCCTTSCEEEECCSSCCCCEEC--CCCSCTTS-CBCSCCE---E-ETTTTEEEECBS-SCCEEE
T ss_pred e-----------EEEEEcCCCCEEEEECccccccCCeE--EEEeeeee-eCCCCcc---c-cccCCEEEEEcC-CEEEEE
Confidence 3 344555677766655211 0000 00000000 1111222 3 5555555554 7 899999
Q ss_pred EcCCCCc-eeeeeecCCCccCC---CCCceEEEEEcCCCCcEEEEEe---C-----CCeEEEEeCCCccccccccceecc
Q 011257 260 NLEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSS---S-----KGSIRLIDMRQSALCDTHSKLFEE 327 (490)
Q Consensus 260 d~~~~~~-~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~---~-----dg~i~iwd~~~~~~~~~~~~~~~~ 327 (490)
|...... ....+.+....... .......++++|++.+++++.. . ++.+.++|+.+.+.. ..+..
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v 312 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN 312 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC
Confidence 9864321 22111110000000 0111122689999844444433 2 235669999998753 44443
Q ss_pred ccCCCccccccccccceEEEEECCCCCE-EEEEc--CCeEEEEeccCCCCceeeeeeeccc
Q 011257 328 QEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD--YMTLKLWDINMDSGPVATFQVHEHL 385 (490)
Q Consensus 328 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~-l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~ 385 (490)
. .....++|+|||++ +++.. ++.|.++|+.+ .+.+.++......
T Consensus 313 g-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 G-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp E-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred C-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 2 35788999999984 44544 69999999998 8888888766543
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=1.8e-09 Score=100.37 Aligned_cols=162 Identities=9% Similarity=0.003 Sum_probs=79.6
Q ss_pred CCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCC-CceE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccc
Q 011257 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319 (490)
Q Consensus 243 ~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~v~-~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~ 319 (490)
.++..++++ .|+.|+.||..+++..... ..+. ..+. ...+. .+ ..+++++.|+.++.||..+++...
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~--------~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w 116 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKL--------PFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQ 116 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEEC--------SCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeee--------eccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEE
Confidence 456666766 7888999998755443221 1110 0000 00111 23 467788889999999999987542
Q ss_pred cccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccccccCCCc
Q 011257 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (490)
.+..+. ...++|++..+++++ ++.|+.||.++ ++.+..+......
T Consensus 117 ----~~~~~~----------------~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~------------- 162 (369)
T 2hz6_A 117 ----TLSSAF----------------ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA------------- 162 (369)
T ss_dssp ------------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC-------------
T ss_pred ----EecCCC----------------cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc-------------
Confidence 222211 134566777777764 69999999997 7766555433211
Q ss_pred cceeeEEEcCCC---CEEEEeecCCeEEEEecCCCceeeeEeccCCCceE-EEEEccCCC
Q 011257 399 FDKFECCLSGDG---GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR-RQVQTPSRP 454 (490)
Q Consensus 399 ~~v~~~~~s~d~---~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~ 454 (490)
..++.++. ..+++++.||.|+.||..+|+. +-.... ..++. ...+++++.
T Consensus 163 ----~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~-~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 163 ----ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV-LWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp ----CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE-EEEEEC-SSCEEEEEECTTSSC
T ss_pred ----CccccCCccccceEEEECCCCEEEEEECCCCcE-EEEecC-CCceEEEEEecCCce
Confidence 23334332 4566788899999999999987 444443 33443 345556653
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.77 E-value=6.6e-07 Score=85.60 Aligned_cols=128 Identities=9% Similarity=0.057 Sum_probs=80.5
Q ss_pred ceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceee-eeecC---CCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEE
Q 011257 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFN-IVDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~-~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 308 (490)
...++.++|||++++++ .+..|.++|+.+....+. .++.. ..+. .-......++|+|+| ..+++...|++|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence 45679999999988886 689999999984321000 00000 0011 123457899999999 8888888999999
Q ss_pred EEeCCCcc------ccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC---CeE-----------EEEe
Q 011257 309 LIDMRQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTL-----------KLWD 368 (490)
Q Consensus 309 iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d---~~i-----------~iwd 368 (490)
.||+.... .....+..+..+.. .+|...-..+.++|||++|+++.. .++ .++|
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yq-------pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~d 428 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQ-------PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLID 428 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSC-------EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEE
T ss_pred EEEhhHhhhhhcccccceeEEEeecccc-------cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEE
Confidence 99987621 11112333433321 123233344566899999998632 344 8999
Q ss_pred ccC
Q 011257 369 INM 371 (490)
Q Consensus 369 ~~~ 371 (490)
+..
T Consensus 429 is~ 431 (595)
T 1fwx_A 429 ISG 431 (595)
T ss_dssp CSS
T ss_pred cCC
Confidence 963
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.75 E-value=7.4e-06 Score=76.20 Aligned_cols=228 Identities=9% Similarity=0.050 Sum_probs=122.7
Q ss_pred CcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCC
Q 011257 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (490)
Q Consensus 126 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g 205 (490)
+..+++++.++.|..+|..+++........... . . .... .+ +.+++++.++
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---------~---~---~p~~-~~-------------~~v~v~~~~g 153 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA---------L---S---RPVV-SD-------------GLVLIHTSNG 153 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCC---------C---S---CCEE-ET-------------TEEEEECTTS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce---------E---c---CCEE-EC-------------CEEEEEcCCC
Confidence 457888899999999999999876554433210 0 0 0011 11 2567777888
Q ss_pred cEEEeeeecccccccccceeeeeccccccce------eEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCcc
Q 011257 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 278 (490)
Q Consensus 206 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v------~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~ 278 (490)
.+..+|...+ +....+. .. ..+ ...... +..++.+ .++.+..+|..++....+.-...+...
T Consensus 154 ~l~~~d~~tG-------~~~W~~~-~~-~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 154 QLQALNEADG-------AVKWTVN-LD-MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp EEEEEETTTC-------CEEEEEE-CC-C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred eEEEEECCCC-------cEEEEEe-CC-CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 8888872111 1111110 00 011 111111 3456666 789999999986655443210000000
Q ss_pred CCCCCceEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEE
Q 011257 279 EDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (490)
Q Consensus 279 ~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 356 (490)
. ....+..+...| .+ ..++.++.++.+..+|..+++... .... .....+... +..|
T Consensus 223 ~-~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w----~~~~--------------~~~~~~~~~--~~~l 280 (376)
T 3q7m_A 223 T-EIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMW----KREL--------------GSVNDFIVD--GNRI 280 (376)
T ss_dssp --------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEE----EECC--------------CCEEEEEEE--TTEE
T ss_pred c-ccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEe----eccC--------------CCCCCceEE--CCEE
Confidence 0 000000000111 13 467778889999999999887532 1111 123334433 4445
Q ss_pred EE-EcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 357 LS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 357 ~s-g~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+. ..++.|..+|..+ ++.+-......... +..... .+..|+.++.+|.|.++|..+|+.
T Consensus 281 ~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--------------~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 281 YLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--------------LTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------CCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred EEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------ccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 54 4568999999987 76654443111100 012222 346788888999999999999976
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=3e-06 Score=85.03 Aligned_cols=78 Identities=9% Similarity=0.010 Sum_probs=52.1
Q ss_pred CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeec
Q 011257 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (490)
Q Consensus 305 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~ 383 (490)
|.|..||+.+++...+ +... .++....+..++..++.++ ++.+++||+++ ++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~----~~~~-------------~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWS----VEHV-------------SPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEE----EEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEee----cCCC-------------CCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence 7899999999875432 2211 2233444566777777774 69999999998 99998887654
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEE
Q 011257 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (490)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 414 (490)
.... .-+.|..+|+.++
T Consensus 519 ~~~~--------------~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVVA--------------APSTYMVDGRQYV 535 (677)
T ss_dssp CCCS--------------CCEEEEETTEEEE
T ss_pred Cccc--------------CCEEEEeCCEEEE
Confidence 3321 2466777887544
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.71 E-value=3.3e-07 Score=83.61 Aligned_cols=199 Identities=9% Similarity=0.092 Sum_probs=115.4
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA 276 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 276 (490)
.+.+++.++.+..+| . +. ...... ..+...+.++...+++.+++...++.|..+|.. +......
T Consensus 109 ~l~v~t~~~~l~~~d-~---~g----~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~------ 172 (330)
T 3hxj_A 109 ILYVTSMDGHLYAIN-T---DG----TEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF------ 172 (330)
T ss_dssp EEEEECTTSEEEEEC-T---TS----CEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE------
T ss_pred EEEEEecCCEEEEEc-C---CC----CEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE------
Confidence 567777788888877 1 11 111111 122334556677777876554478899999987 4433222
Q ss_pred ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEE
Q 011257 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (490)
Q Consensus 277 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 356 (490)
......+.++...+++ .++ .++ +.|..+| .+++.. ..+.... ..+.++...++|.+.
T Consensus 173 --~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~~~----~~~~~~~------------~~~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 173 --KTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDGTEK----WNFYAGY------------WTVTRPAISEDGTIY 229 (330)
T ss_dssp --ECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTSCEE----EEECCSS------------CCCSCCEECTTSCEE
T ss_pred --ecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCCcEE----EEEccCC------------cceeceEECCCCeEE
Confidence 1123345566777777 444 444 7899999 665432 2222111 357788888888877
Q ss_pred EEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeE
Q 011257 357 LSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT 436 (490)
Q Consensus 357 ~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~ 436 (490)
+...++.|..+|.. ++.+..+....... ..+.+.+++. |..++.+|.|..+|. +++. +..
T Consensus 230 v~t~~~gl~~~~~~--g~~~~~~~~~~~~~---------------~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~-~~~ 289 (330)
T 3hxj_A 230 VTSLDGHLYAINPD--GTEKWRFKTGKRIE---------------SSPVIGNTDT-IYFGSYDGHLYAINP-DGTE-KWN 289 (330)
T ss_dssp EEETTTEEEEECTT--SCEEEEEECSSCCC---------------SCCEECTTSC-EEEECTTCEEEEECT-TSCE-EEE
T ss_pred EEcCCCeEEEECCC--CCEeEEeeCCCCcc---------------ccceEcCCCe-EEEecCCCCEEEECC-CCcE-EEE
Confidence 76667888888753 55555544332211 1455555665 556777888999996 5655 344
Q ss_pred eccCCCceEEEEEccCCC
Q 011257 437 LEASKNPMRRQVQTPSRP 454 (490)
Q Consensus 437 ~~~~~~~v~~~~~sp~~~ 454 (490)
+......+.++...+++.
T Consensus 290 ~~~~~~~~~~~~~d~~g~ 307 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGT 307 (330)
T ss_dssp EECSSCCCSCCEECTTCC
T ss_pred EEcCCccccceEEcCCCE
Confidence 443334444555544444
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.70 E-value=9.2e-07 Score=84.64 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=66.2
Q ss_pred ceEEEEECCCCCEEEEEc--CCeEEEEeccCCCC------------ceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 343 SISDIKFARNGRHILSRD--YMTLKLWDINMDSG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
...++.++|||+++++++ +.+|.++|+.+ .+ ....+....+ -+.++|+|
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~g----------------P~h~aF~~ 340 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLG----------------PLHTAFDG 340 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSC----------------EEEEEECT
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCC----------------cceEEECC
Confidence 457799999999998864 48999999985 21 1122221111 24789999
Q ss_pred CCCEEEEeecCCeEEEEecCCC---------ceeeeEeccCCCce-----EEEEEccCCCCCCCCc
Q 011257 409 DGGRVATGSYSNLFRVFGCSEG---------SAESTTLEASKNPM-----RRQVQTPSRPSRPLGS 460 (490)
Q Consensus 409 d~~~l~s~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~v-----~~~~~sp~~~~~~~~~ 460 (490)
+|...++.--|+.|.+||++++ ...+..+..|..+- ..+.++|||+.+..+.
T Consensus 341 dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 341 RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 9944445557999999999872 12356666665442 2234578887765443
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.68 E-value=7e-06 Score=74.72 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=126.2
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCc
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~ 206 (490)
..+..++.++.|..+|.. ++.......... . ...+...++|. ++.++.++.
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~--------~-------~~~~~~~~~g~-------------l~vgt~~~~ 158 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKA--------I-------YATPIVSEDGT-------------IYVGSNDNY 158 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEECSSC--------C-------CSCCEECTTSC-------------EEEECTTSE
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEcCCCc--------e-------eeeeEEcCCCE-------------EEEEcCCCE
Confidence 467788889999999988 554433322110 0 01233344443 566777788
Q ss_pred EEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceE
Q 011257 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (490)
Q Consensus 207 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~ 286 (490)
+..+| .+. .....+ ......+.++...+++.+++.. +.+..+| .+....... ......+.
T Consensus 159 l~~~d----~~g----~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~--------~~~~~~~~ 218 (330)
T 3hxj_A 159 LYAIN----PDG----TEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNF--------YAGYWTVT 218 (330)
T ss_dssp EEEEC----TTS----CEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEE--------CCSSCCCS
T ss_pred EEEEC----CCC----CEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEE--------ccCCccee
Confidence 88887 111 111111 1223455667777788766655 8899999 434433322 22235577
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEE
Q 011257 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366 (490)
Q Consensus 287 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~i 366 (490)
++...+++ .+..++.++.+..+|. +++.. ..+.... ..+..+.+.+++.+.+...++.|..
T Consensus 219 ~~~~~~~g--~l~v~t~~~gl~~~~~-~g~~~----~~~~~~~------------~~~~~~~~~~~g~l~v~t~~ggl~~ 279 (330)
T 3hxj_A 219 RPAISEDG--TIYVTSLDGHLYAINP-DGTEK----WRFKTGK------------RIESSPVIGNTDTIYFGSYDGHLYA 279 (330)
T ss_dssp CCEECTTS--CEEEEETTTEEEEECT-TSCEE----EEEECSS------------CCCSCCEECTTSCEEEECTTCEEEE
T ss_pred ceEECCCC--eEEEEcCCCeEEEECC-CCCEe----EEeeCCC------------CccccceEcCCCeEEEecCCCCEEE
Confidence 78888887 4555677888888874 33322 2222211 2233455666776666556688999
Q ss_pred EeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
+|. + ++.+..+...... +.++...++|++. .++.+|.+++...+..
T Consensus 280 ~d~-~-g~~~~~~~~~~~~---------------~~~~~~d~~g~l~-~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 280 INP-D-GTEKWNFETGSWI---------------IATPVIDENGTIY-FGTRNGKFYALFNLEH 325 (330)
T ss_dssp ECT-T-SCEEEEEECSSCC---------------CSCCEECTTCCEE-EECTTSCEEEEEC---
T ss_pred ECC-C-CcEEEEEEcCCcc---------------ccceEEcCCCEEE-EEcCCCeEEEEecccc
Confidence 996 3 6665555432221 2366777787754 5788999998876643
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.67 E-value=1.4e-05 Score=69.26 Aligned_cols=211 Identities=9% Similarity=0.026 Sum_probs=128.2
Q ss_pred cccccc--cEEEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc--ccCCcccc
Q 011257 31 EVQEVD--IISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFD 104 (490)
Q Consensus 31 ~~~h~~--~V~~~~~s~dg~~latg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~h~~~~~ 104 (490)
.+.|.. ....+.|++|+.+.++.+ .++.|.+.|..+++.. ..+ ..+.
T Consensus 14 ~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------------------~~i~l~~~~---- 66 (266)
T 2iwa_A 14 EFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------------------NIHKMDDSY---- 66 (266)
T ss_dssp EEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------------------EEEECCTTC----
T ss_pred EEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------------------EEEecCCCc----
Confidence 445554 368999999875444443 2579999999988732 111 1111
Q ss_pred eeeeeeeccceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCC
Q 011257 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (490)
Q Consensus 105 ~~~~~~~~~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 184 (490)
....+++. ++..+++.-.++.+.++|..+.+........ ... ...+++||+
T Consensus 67 ---------fgeGi~~~---g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------------g~glt~Dg~ 117 (266)
T 2iwa_A 67 ---------FGEGLTLL---NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------------GWGLATDGK 117 (266)
T ss_dssp ---------CEEEEEEE---TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------------CCEEEECSS
T ss_pred ---------ceEEEEEe---CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------------eEEEEECCC
Confidence 12235554 2345556667899999999998877655433 111 345777887
Q ss_pred ccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeecccc-ccceeEEEecCCCCEEEEe-cCCcEEEEEcC
Q 011257 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLE 262 (490)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~ 262 (490)
.++++..++.|.+.| .+..........-..+. -..++.+.|. ++..++.. .++.|.+.|..
T Consensus 118 ------------~l~vs~gs~~l~viD----~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~ 180 (266)
T 2iwa_A 118 ------------ILYGSDGTSILYEID----PHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK 180 (266)
T ss_dssp ------------SEEEECSSSEEEEEC----TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT
T ss_pred ------------EEEEECCCCeEEEEE----CCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC
Confidence 455555678899888 22211111111110111 1235677777 67666555 68899999998
Q ss_pred CCCceeeeeecCCC------ccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc
Q 011257 263 ISNQSFNIVDVKPA------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 263 ~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (490)
+. +....++.... .-.........++|+|++.++++++...+.+...++...
T Consensus 181 tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 181 DG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 54 44555433200 000112467899999998678888888999999887654
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.64 E-value=6.6e-06 Score=82.77 Aligned_cols=78 Identities=8% Similarity=-0.008 Sum_probs=51.6
Q ss_pred CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeee
Q 011257 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
+|.|+.||+.+++... .+..+ .+...-.+...+.+++.|+ |+.++.||.++ ++.+..++..
T Consensus 454 ~g~l~A~D~~tG~~~W----~~~~~-------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAW----EVPYV-------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTTTEEEE----EEEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred ceeEEEEECCCCCeEe----EccCC-------------CCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeCC
Confidence 3778999999887543 22221 1222234555677888875 69999999998 9998888765
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEE
Q 011257 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 413 (490)
..... .-+.|..+|+..
T Consensus 516 ~~~~~--------------~p~ty~~~G~qy 532 (689)
T 1yiq_A 516 SGVMA--------------APVTYSVDGEQY 532 (689)
T ss_dssp SCCCS--------------CCEEEEETTEEE
T ss_pred CCccc--------------CceEEEECCEEE
Confidence 54321 146777888743
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.64 E-value=4.2e-05 Score=76.64 Aligned_cols=177 Identities=14% Similarity=0.151 Sum_probs=102.4
Q ss_pred EEEecCCCCEEEEe-cCC-------------------cEEEEEcCCCCceeeeeecCCCccCCCC-------CceEEEEE
Q 011257 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF 290 (490)
Q Consensus 238 ~i~~~~~~~~l~~~-~d~-------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~ 290 (490)
.++++++...++.+ .++ .|..+|..+++...+.- ...|. .++....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence 57888888888877 554 38899998766554431 11121 23333333
Q ss_pred cCCCCc---EEEEEeCCCeEEEEeCCCcccccccc-------ceeccccC-CC--cccccc--------cccc--ceEEE
Q 011257 291 HPTHCN---MLAYSSSKGSIRLIDMRQSALCDTHS-------KLFEEQEA-PG--TRSFFT--------EIIA--SISDI 347 (490)
Q Consensus 291 ~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~-~~--~~~~~~--------~h~~--~i~~l 347 (490)
..++ + .++.++.+|.++++|..+++.+...- ..+..... +. ....+. +..+ .-..+
T Consensus 308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EETT-EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred ccCC-cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 3455 4 68899999999999999998642100 00000000 00 000000 0000 01125
Q ss_pred EECCCCCEEEEE------------------------------------cC-CeEEEEeccCCCCceeeeeeecccccccc
Q 011257 348 KFARNGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 348 ~~sp~g~~l~sg------------------------------------~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
+++|+...++.. .. |.|..||+.+ ++.+-........
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----- 460 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW----- 460 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC-----
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC-----
Confidence 677766555431 12 7789999987 7766555443221
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 439 (490)
....+...+.+|++++.||.|+.||.++|+. +..++.
T Consensus 461 -----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~-l~~~~~ 497 (668)
T 1kv9_A 461 -----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGEA-LWQFEA 497 (668)
T ss_dssp -----------CCCEEEETTTEEEEECTTSEEEEEETTTCCE-EEEEEC
T ss_pred -----------cCceeEeCCCEEEEECCcccchhhhhhcChh-heEecC
Confidence 1334555788899999999999999999987 444443
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.61 E-value=1e-05 Score=69.21 Aligned_cols=191 Identities=13% Similarity=0.179 Sum_probs=112.4
Q ss_pred ccEEEEEECCCCCEEEEecCCC--cEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 36 DIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.-...+.|+ ++.+..+.+.+| .|+++|+.+++.. ..+.-. .
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------------~ 85 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------------K 85 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC-------------T
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC-------------C
Confidence 345788998 676666666665 8999999988732 111110 1
Q ss_pred cee--EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 114 KIN--KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 114 ~V~--~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
... .++.. ++..+++.-.++.+.++|..+.+....+..... ...++++++
T Consensus 86 ~~FgeGit~~---g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~------- 137 (262)
T 3nol_A 86 RYFGEGISDW---KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQ------- 137 (262)
T ss_dssp TCCEEEEEEE---TTEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSS-------
T ss_pred ccceeEEEEe---CCEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCC-------
Confidence 122 23443 234455556789999999999988776665431 335556776
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccc-cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.|+....++.|.++| .+.............+.. ..++.+.|. +|+.++.. .++.|.+.|.+ .++...
T Consensus 138 -----~L~~SdGs~~i~~iD----p~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~-tG~V~~ 206 (262)
T 3nol_A 138 -----YLIMSDGTPVLRFLD----PESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE-TGKVTG 206 (262)
T ss_dssp -----CEEECCSSSEEEEEC----TTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT-TCBEEE
T ss_pred -----EEEEECCCCeEEEEc----CCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC-CCcEEE
Confidence 455555577888887 221111111111111111 334556775 67766666 68899999998 455555
Q ss_pred eeecCCCc-----cCCCCCceEEEEEcCCCCcEEEEEe
Q 011257 270 IVDVKPAN-----MEDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 270 ~~~~~~~~-----~~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
.++..... ........+.++|+|++.+++++|-
T Consensus 207 ~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 207 IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 55543110 1112346789999998856666653
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.60 E-value=1.8e-05 Score=73.52 Aligned_cols=222 Identities=7% Similarity=0.023 Sum_probs=119.1
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCc
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~ 206 (490)
..+++++.++.|..+|..+++................. . ..... ++.++++..++.
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-------~---~~~~~--------------~~~v~~g~~~g~ 199 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE-------S---APTTA--------------FGAAVVGGDNGR 199 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC-------C---CCEEE--------------TTEEEECCTTTE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC-------C---CcEEE--------------CCEEEEEcCCCE
Confidence 47888889999999999999876655433211000000 0 01111 225677778888
Q ss_pred EEEeeeecccccccccceeeeeccccc------cceeEEEecC--CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCc
Q 011257 207 LRLPVVVTSQETNLVAGCRRIYAHAHD------YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (490)
Q Consensus 207 v~iw~~~~~~~~~~~~~~~~~~~~~~~------~~v~~i~~~~--~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~ 277 (490)
+..+|. .. ++.......... ..+..+...| .+..++.+ .++.+..+|..++...... .
T Consensus 200 l~~~d~-~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~------~ 266 (376)
T 3q7m_A 200 VSAVLM-EQ------GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR------E 266 (376)
T ss_dssp EEEEET-TT------CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE------C
T ss_pred EEEEEC-CC------CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec------c
Confidence 888872 11 111111100000 0000011111 23455555 7899999999866554332 1
Q ss_pred cCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEE
Q 011257 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (490)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~ 357 (490)
......+... + ..++.++.++.+..+|..+++...+ ...... ..+...... +..|+
T Consensus 267 ----~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~----~~~~~~-----------~~~~~~~~~--~~~l~ 322 (376)
T 3q7m_A 267 ----LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWT----QSDLLH-----------RLLTSPVLY--NGNLV 322 (376)
T ss_dssp ----CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEE----ECTTTT-----------SCCCCCEEE--TTEEE
T ss_pred ----CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEe----ecccCC-----------CcccCCEEE--CCEEE
Confidence 1223344443 3 5777788899999999999875421 110000 111222222 34566
Q ss_pred EE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEe
Q 011257 358 SR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (490)
Q Consensus 358 sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~ 426 (490)
.+ .+|.+.++|..+ ++.+........... ..... .+..|+.++.+|.|+.|+
T Consensus 323 v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~--------------~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 323 VGDSEGYLHWINVED-GRFVAQQKVDSSGFQ--------------TEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EECTTSEEEEEETTT-CCEEEEEECCTTCBC--------------SCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEeCCCeEEEEECCC-CcEEEEEecCCCcce--------------eCCEE--ECCEEEEEeCCCEEEEEe
Confidence 65 469999999997 877766654222110 01222 245677788899999887
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.60 E-value=1.4e-05 Score=72.60 Aligned_cols=116 Identities=9% Similarity=-0.054 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c--
Q 011257 285 ITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-- 360 (490)
Q Consensus 285 v~~~~~~p~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-- 360 (490)
...++++|++ +.| ++-..++.|..|++.....- ....+... .+ ...++++++|++.++. .
T Consensus 187 p~gia~~~dg-~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~~------------~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 187 PGGAEVSADS-SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVKI------------PN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp CCEEEECTTS-SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEEC------------SS-EEEEEECTTSCEEEEEEEET
T ss_pred CcceEECCCC-CEEEEEeCCCCeEEEEECCCCcCC--ccceEEeC------------CC-CCCeEECCCCCEEEEecCcc
Confidence 4579999998 644 44466789999998753210 01111110 02 5778999999877764 3
Q ss_pred --------CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 361 --------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 361 --------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
.+.|..+|.. ++.+..+....+.. ...+..+++ .++++.++....+.|.++++...
T Consensus 251 ~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TSSTTSCEEEEEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccccCCCccEEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 2567777764 66666665443210 001235666 36676666667888999998743
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.52 E-value=0.00035 Score=71.87 Aligned_cols=325 Identities=11% Similarity=0.078 Sum_probs=174.6
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc-ee
Q 011257 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK-IN 116 (490)
Q Consensus 38 V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~-V~ 116 (490)
|.++...++|.+.+.. . +-|.+||..+++.. ....++. ... |.
T Consensus 133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~-----------------------~~~~~~~-----------~~~~i~ 176 (795)
T 4a2l_A 133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFI-----------------------DDSFSTA-----------MHKTIA 176 (795)
T ss_dssp CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEE-----------------------CSSSCHH-----------HHTCCE
T ss_pred EEEEEECCCCCEEEEE-C-CceEEEECCCCEEE-----------------------eccCCCC-----------CCcceE
Confidence 8888888888765543 3 45888886544310 0000110 022 77
Q ss_pred EEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCC
Q 011257 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~ 196 (490)
++...+ ++ .+..++.++-|..|+..+++........ ....+ .++...++|.
T Consensus 177 ~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~-------~~~~i-------~~i~~d~~g~------------ 227 (795)
T 4a2l_A 177 STLYRQ--GD-QIYIGTSTDGLYTYSITQKTFEKVIPIL-------GTKQI-------QAILQQSPTR------------ 227 (795)
T ss_dssp EEEEEE--TT-EEEEEESSSCEEEEETTTCCEEECC-----------CCCE-------EEEEEEETTE------------
T ss_pred EEEECC--CC-CEEEEECCCCEEEEeCCCCeEEEecCCC-------CCCee-------EEEEEcCCCC------------
Confidence 777764 44 4555666656889998887654432110 00111 1334444444
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCC-
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP- 275 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~- 275 (490)
+.+++.++-+..|+ ..................-....|.++...++|.+.+...+ -|.+|+.... .. ..+...+
T Consensus 228 -lwigt~~~Gl~~~~-~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~-~~-~~~~~~~~ 302 (795)
T 4a2l_A 228 -IWVATEGAGLFLIN-PKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD-SF-ASYSSNPV 302 (795)
T ss_dssp -EEEEEBSSCEEEEE-TTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT-EE-EEECCCTT
T ss_pred -EEEEECCCCeEEEe-CCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC-eE-EEEecCCC
Confidence 44555444466666 11110000000000000012356889999988887766555 5888987633 22 2221110
Q ss_pred CccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCE
Q 011257 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (490)
Q Consensus 276 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 355 (490)
....-....|.++...++| . |-.|+.++-|..|+..++.. ..+...... . .-....|.++...++|.+
T Consensus 303 ~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~~--~---~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 303 ENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHPIRNRF-----KNIRNIPYK--N---SLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp STTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECGGGGSS-----EEECCCTTS--S---SCSCSSEEEEEECTTSCE
T ss_pred CCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCCCcccc-----eEEcCCCCC--C---CCCCCeeEEEEECCCCCE
Confidence 0011134679999999988 4 55577777788888765432 122111000 0 001246999999999987
Q ss_pred EEEEcCCeEEEEeccCCCCceeeeeeeccccc-cccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceee
Q 011257 356 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRP-KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (490)
Q Consensus 356 l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~ 434 (490)
.+...++-|..||..+ +. ...+........ .+ ....|.+++..++|++|..|+.++-|..||..+++..
T Consensus 371 WiGt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~l-------~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~- 440 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPIT-QR-FTSYTLQEDESARGI-------GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE- 440 (795)
T ss_dssp EEEESSSCEEEECTTT-CC-EEEECCC------CC-------SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-
T ss_pred EEEECCCCeEEEcCCC-Cc-EEEEecCCCCcccCC-------CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-
Confidence 7765667789999874 32 333321110000 00 0012568888888985566777778999999887642
Q ss_pred eEec-----cCCCceEEEEEccCCCC
Q 011257 435 TTLE-----ASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 435 ~~~~-----~~~~~v~~~~~sp~~~~ 455 (490)
.+. .+...|.++...+++..
T Consensus 441 -~~~~~~~~l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 441 -NFNQRNSQLVNENVYAILPDGEGNL 465 (795)
T ss_dssp -EECTTTSCCSCSCEEEEEECSSSCE
T ss_pred -EeecCCCCcCCCeeEEEEECCCCCE
Confidence 222 23456888877776653
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.51 E-value=0.00077 Score=69.33 Aligned_cols=334 Identities=11% Similarity=0.047 Sum_probs=176.8
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccceeE
Q 011257 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (490)
Q Consensus 38 V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 117 (490)
|.++...++|.+.+ |+.++-|..|+..+++.. ... ...+. ..|.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~---------------------~~~-~~~~~------------~~i~~ 219 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE---------------------KVI-PILGT------------KQIQA 219 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE---------------------ECC-----C------------CCEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE---------------------Eec-CCCCC------------CeeEE
Confidence 88898888886555 555545888887654411 000 00111 45777
Q ss_pred EEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCc
Q 011257 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (490)
Q Consensus 118 v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~ 197 (490)
+...+ ++ .+..++.++-+.+||..+++.......... ........+ .++...++|.
T Consensus 220 i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~~l~~~~i-------~~i~~d~~g~------------- 275 (795)
T 4a2l_A 220 ILQQS--PT-RIWVATEGAGLFLINPKTKEIKNYLHSPSN-PKSISSNYI-------RSLAMDSQNR------------- 275 (795)
T ss_dssp EEEEE--TT-EEEEEEBSSCEEEEETTTTEEEEECCCTTC-TTSCSCSBE-------EEEEECTTSC-------------
T ss_pred EEEcC--CC-CEEEEECCCCeEEEeCCCCeEEEeecCCCC-ccccCCCeE-------EEEEEcCCCC-------------
Confidence 77754 44 455566555588999988776554321100 000111111 2444555555
Q ss_pred cccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCc
Q 011257 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 277 (490)
Q Consensus 198 l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 277 (490)
+..|+.+ -|.+|+ ..................-....|.++...++|.+.+...++-|..|+..... +..+...+..
T Consensus 276 lWigt~~-Gl~~~~-~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~ 351 (795)
T 4a2l_A 276 LWIGTFN-DLNIYH-EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYK 351 (795)
T ss_dssp EEEEESS-CEEEEE-TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTS
T ss_pred EEEEeCC-hhheEc-CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCC
Confidence 4455555 466666 11110000000000000112356899999999987766666778888876332 2211111000
Q ss_pred cCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCC-EE
Q 011257 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HI 356 (490)
Q Consensus 278 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~-~l 356 (490)
-.-....|.++...++| . |-.|+.++-|..||..++.. ..+...... ... .-....|.++...++|+ +.
T Consensus 352 ~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~-----~~~~~~~~~-~~~--~l~~~~v~~i~~d~~g~~lW 421 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRF-----TSYTLQEDE-SAR--GIGSNNIKAVYVDEKKSLVY 421 (795)
T ss_dssp SSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCE-----EEECCC---------CCSCSCEEEEEEETTTTEEE
T ss_pred CCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcE-----EEEecCCCC-ccc--CCCCccEEEEEEcCCCCEEE
Confidence 01124569999998887 4 55577777799999877542 222111000 000 00115689999999998 45
Q ss_pred EEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeE
Q 011257 357 LSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT 436 (490)
Q Consensus 357 ~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~ 436 (490)
+...++-|.+||..+ ++ +..+...... + ....|.++...++|++.+.. .+ .|.+|+..+++.....
T Consensus 422 igt~~~Gl~~~d~~~-~~-~~~~~~~~~~---l-------~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~ 487 (795)
T 4a2l_A 422 IGTHAGGLSILHRNS-GQ-VENFNQRNSQ---L-------VNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIE 487 (795)
T ss_dssp EEETTTEEEEEETTT-CC-EEEECTTTSC---C-------SCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECC
T ss_pred EEeCcCceeEEeCCC-Cc-EEEeecCCCC---c-------CCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEcc
Confidence 444457799999875 33 3333211000 0 00125688888888866644 34 5888998876542111
Q ss_pred e-----ccCCCceEEEEEccCCCCCCC
Q 011257 437 L-----EASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 437 ~-----~~~~~~v~~~~~sp~~~~~~~ 458 (490)
. ......|.++...+++..-..
T Consensus 488 ~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 488 KEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp BCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred ccccccccCCceEEEEEECCCCCEEEE
Confidence 1 112356888888877764443
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=2.4e-05 Score=67.71 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=117.7
Q ss_pred ceeEEEecCCCCEEEEe-c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 235 HINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
....++|++++.++++. . ++.|.++|+.+.+ ....+. +..+. ....+++. +..++++.-.++.+.++|
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-v~~~i~-----l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-VENIHK-----MDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-EEEEEE-----CCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-EEEEEe-----cCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEE
Confidence 45789999987555553 2 6899999999554 443332 22221 12345555 325666666789999999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecccccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
..+.+.. ..+.... + . ...+++||+.++.++ ++.|.++|..+ .+.+..+.......+
T Consensus 93 ~~t~~v~----~~i~~g~-~----------~---g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p--- 150 (266)
T 2iwa_A 93 RRTLSNI----KNFTHQM-K----------D---GWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHR--- 150 (266)
T ss_dssp TTTTEEE----EEEECCS-S----------S---CCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEE---
T ss_pred CCCCcEE----EEEECCC-C----------C---eEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcc---
Confidence 9987653 3443220 0 1 123556777777654 48999999987 777777765432100
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC-------------CCceEEEEEccCCCCCC
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~~~ 457 (490)
+.....+.|. +|+..+....++.|.+.|..+++. +..+... ......++|+|+++...
T Consensus 151 -------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 151 -------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp -------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred -------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 0002367787 776655555688999999999987 4555432 13568999999987544
Q ss_pred CC
Q 011257 458 LG 459 (490)
Q Consensus 458 ~~ 459 (490)
.+
T Consensus 222 VT 223 (266)
T 2iwa_A 222 VT 223 (266)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.46 E-value=0.00024 Score=69.66 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=46.7
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCC
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 441 (490)
+.|..||+.+ ++.+-.+...... ....+...+..++.++.||.|+.||.++|+. +..++...
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~ 505 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKE-LWNFKMPS 505 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECSS
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCCCE-EEEEeCCC
Confidence 6888888886 7766555433211 1222333566777789999999999999987 44444322
Q ss_pred Cc-eEEEEEccCCCCCC
Q 011257 442 NP-MRRQVQTPSRPSRP 457 (490)
Q Consensus 442 ~~-v~~~~~sp~~~~~~ 457 (490)
.. -..+.+..++....
T Consensus 506 ~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcEeeeEEEEECCEEEE
Confidence 11 12233445555433
No 247
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.45 E-value=0.00013 Score=62.73 Aligned_cols=220 Identities=9% Similarity=0.138 Sum_probs=123.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
..+..++|+|. .+.++++...++.|...|.. +++......... .-+-.+++.+++.
T Consensus 27 ~~lSGla~~~~-~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~--------------~D~EGIa~~~~g~-------- 82 (255)
T 3qqz_A 27 NNISSLTWSAQ-SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV--------------KDLETIEYIGDNQ-------- 82 (255)
T ss_dssp SCEEEEEEETT-TTEEEEEEETTEEEEEEETT-CCEEEEEECSSC--------------SSEEEEEECSTTE--------
T ss_pred cCcceeEEeCC-CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC--------------CChHHeEEeCCCE--------
Confidence 56999999974 34566668889999999998 666555443211 0111567777776
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceee-ee-ccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCC--CCce
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR-IY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQS 267 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~-~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~--~~~~ 267 (490)
++++...++.+.++++........ ..... .+ ..........++++|.++.|.++ +.....+|.+.. ....
T Consensus 83 ----~~vs~E~~~~l~~~~v~~~~~i~~-~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~ 157 (255)
T 3qqz_A 83 ----FVISDERDYAIYVISLTPNSEVKI-LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE 157 (255)
T ss_dssp ----EEEEETTTTEEEEEEECTTCCEEE-EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC
T ss_pred ----EEEEECCCCcEEEEEcCCCCeeee-eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc
Confidence 555555566777776322221000 01110 00 12234567899999998777776 444444554431 1112
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
+.+.+.+...-..+...+.+++++|...++++....+..+..+|.... ... ...+.... .-+..-...-..|
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~--~~~L~~g~-----~~l~~~~~qpEGi 229 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIG--EMSLTKGS-----RGLSHNIKQAEGV 229 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE--EEECSTTG-----GGCSSCCCSEEEE
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEE--EEEcCCcc-----CCcccccCCCCee
Confidence 222211000001123456899999987578888888899999997643 221 11222100 0000001346889
Q ss_pred EECCCCCEEEEEcCCeEEEEec
Q 011257 348 KFARNGRHILSRDYMTLKLWDI 369 (490)
Q Consensus 348 ~~sp~g~~l~sg~d~~i~iwd~ 369 (490)
+|.++|+..+++..+.++.+..
T Consensus 230 a~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 230 AMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EECTTCCEEEEETTTEEEEEEC
T ss_pred EECCCCCEEEEcCCceEEEEEe
Confidence 9999999777766576666654
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.42 E-value=0.0006 Score=61.12 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=61.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y 361 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d 361 (490)
....+ +|++..++++-...++|..+|+.. ++.- ....+... .....++++++|+++++.. .
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~~-------------~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVEQ-------------TNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEES-------------CCCSSEEEBTTCCEEEECBTT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEecc-------------CCCCCeEECCCCCEEEEeCCC
Confidence 34555 788734556666688999999875 3211 01111110 2346789999998777653 4
Q ss_pred CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEc---CCCCEEEEeecCC
Q 011257 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS---GDGGRVATGSYSN 420 (490)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~s~~~dg 420 (490)
+.|.++|.. ++........... ...++++|. ||++.|..++..+
T Consensus 233 ~~V~~~~~~--G~~~~~~~~~~~~-------------~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 233 NSVVRIAPD--RSTTIIAQAEQGV-------------IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEECTT--CCEEEEECGGGTC-------------TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEEEECCC--CCEEEEeeccccc-------------CCceEEEEecccCCCCEEEEECCCC
Confidence 889999875 4432211111110 013489998 8887776655543
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.42 E-value=3.9e-05 Score=65.58 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=112.3
Q ss_pred cceeEEEecCCCCEEEEe-cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 234 YHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
.....+.|+ ++.++.+. .+| .|+.+|+.+.+.. ..+. +.... .--.+++. +.++++..-.++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-~~~~-----l~~~~-FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-QQIE-----LGKRY-FGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-EEEE-----CCTTC-CEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-EEEe-----cCCcc-ceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 344788888 56555554 544 8999999965543 3332 22111 11234443 42566666678999999
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
|..+.+.. .++.... .=..++ +|++.|+.++ .+.|.++|..+ .+.+.++........
T Consensus 113 D~~t~~~~----~ti~~~~-------------eG~glt--~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~-- 170 (262)
T 3nol_A 113 NIRNLRQV----RSFNYDG-------------EGWGLT--HNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE-- 170 (262)
T ss_dssp ETTTCCEE----EEEECSS-------------CCCCEE--ECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE--
T ss_pred ECccCcEE----EEEECCC-------------CceEEe--cCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc--
Confidence 99987753 4444321 112333 5677777654 48899999997 788877766432110
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC------------CCceEEEEEccCCCCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~------------~~~v~~~~~sp~~~~~~ 457 (490)
+..+..+.|. +|++.+..-.++.|.+.|.++|+. +..+... .+-.+.+||+|++....
T Consensus 171 --------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 171 --------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred --------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 0001246776 777666555688999999999986 4454432 23568899999877544
Q ss_pred C
Q 011257 458 L 458 (490)
Q Consensus 458 ~ 458 (490)
.
T Consensus 241 V 241 (262)
T 3nol_A 241 V 241 (262)
T ss_dssp E
T ss_pred E
Confidence 3
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.41 E-value=0.00054 Score=60.05 Aligned_cols=134 Identities=12% Similarity=0.127 Sum_probs=78.6
Q ss_pred eeEEEecCCCCEEEEe--c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 236 INSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 236 v~~i~~~~~~~~l~~~--~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
...++++|++..|..+ . .+.|..+++..... ..+ ..........++++|++..++++-...+.|..+|
T Consensus 124 P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RIL------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEE------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEE------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 4678888865555444 2 36788888763221 111 0112345789999998735666666778999999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c-CCeEEEEeccCCCCceeeeeeeccccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
....... ..+... .....++.. +..|..+ . .+.|..+|..+ ++.+..+.......
T Consensus 196 ~~g~~~~----~~~~~~-------------~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~g~~~~--- 252 (267)
T 1npe_A 196 PAQPGRR----KVLEGL-------------QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHPHKQTR--- 252 (267)
T ss_dssp TTEEEEE----EEEECC-------------CSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEEEEEECCSSCCC---
T ss_pred cCCCceE----EEecCC-------------CCceEEEEe--CCEEEEEECCCCeEEEEeCCC-CCceEEEccccccc---
Confidence 8754321 111111 123456654 4455544 3 38999999986 77777765432110
Q ss_pred cccccCCCccceeeEEEcCCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
...+++.|++.
T Consensus 253 -----------p~gi~~~~~~~ 263 (267)
T 1npe_A 253 -----------LYGITIALSQC 263 (267)
T ss_dssp -----------CCCEEEECSCC
T ss_pred -----------cceeeecCccC
Confidence 12778888765
No 251
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.41 E-value=0.00099 Score=61.86 Aligned_cols=176 Identities=10% Similarity=0.064 Sum_probs=99.5
Q ss_pred eEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC-CeEEEEeCC
Q 011257 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMR 313 (490)
Q Consensus 237 ~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~ 313 (490)
..+++.+.+..|+.. ..+.|.+.++..... ..+ +.........++++|.+..++.+-... +.|..+++.
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 456666655555444 466777777763322 111 122235578999998763555555445 788888876
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeeccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (490)
.... ..+.... ......|+|+|++..|..++ .+.|..+|++ +.....+.......
T Consensus 234 G~~~-----~~~~~~~-----------~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~----- 290 (386)
T 3v65_B 234 GSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH----- 290 (386)
T ss_dssp SCSC-----EEEECSS-----------CSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSS-----
T ss_pred CCCc-----EEEEECC-----------CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCC-----
Confidence 5321 1221111 13468899998777777653 3889999987 33323222111100
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEE-EEccCCC
Q 011257 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRP 454 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~ 454 (490)
-..+++. .+.++++-...+.|..++..+|+. ...+.........+ .++|..+
T Consensus 291 ---------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~-~~~i~~~~~~p~gi~v~~~~~q 343 (386)
T 3v65_B 291 ---------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN-QEIIRNKLHFPMDIHTLHPQRQ 343 (386)
T ss_dssp ---------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS-CEEEECSCSCCCCEEEESGGGS
T ss_pred ---------ceEEEEE-CCEEEEeeCCCCeEEEEECCCCcc-eEEEccCCCCCceEEEEchhcC
Confidence 1267773 455556666678899999777765 34444433334444 4456544
No 252
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.0013 Score=60.17 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=101.9
Q ss_pred eeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC-CeEEEEeC
Q 011257 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 312 (490)
Q Consensus 236 v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~ 312 (490)
...+++.+.+..|+.+ ..+.|.+.++...... .+ ..........++++|.+..++.+-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 3567777755555544 5778888888733222 11 122234578999999663555665555 78888887
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeecccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
..... ..+.... ......|+++|++..|..++ .+.|..+|++ +.....+.......
T Consensus 190 dG~~~-----~~~~~~~-----------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~---- 247 (349)
T 3v64_C 190 DGSGR-----RIIADTH-----------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPH---- 247 (349)
T ss_dssp TSCSC-----EESCCSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSS----
T ss_pred CCCCc-----EEEEECC-----------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCC----
Confidence 75321 1221111 13468899999777777663 3889999987 33323222111000
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEE-EEccCCC
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRP 454 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~ 454 (490)
-..+++. ++.+.++-...+.|..++..+|+. ...+.........+ .++|..+
T Consensus 248 ----------P~giav~-~~~ly~td~~~~~V~~~~~~~G~~-~~~i~~~~~~p~gi~v~~~~~q 300 (349)
T 3v64_C 248 ----------PFAITVF-EDSLYWTDWHTKSINSANKFTGKN-QEIIRNKLHFPMDIHTLHPQRQ 300 (349)
T ss_dssp ----------EEEEEEE-TTEEEEEETTTTEEEEEETTTCCS-CEEEECSCSCCCCEEEECGGGS
T ss_pred ----------ceEEEEE-CCEEEEecCCCCeEEEEEccCCCc-cEEeccCCCCCceEEEEccccC
Confidence 1267773 455555555678899998777765 34444333333444 4566554
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.38 E-value=7.1e-05 Score=63.98 Aligned_cols=190 Identities=9% Similarity=0.116 Sum_probs=114.1
Q ss_pred cEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccc-cccCCcccceeeeeeeccce
Q 011257 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE-FQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 37 ~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~h~~~~~~~~~~~~~~~V 115 (490)
-...+.|+. +.+..+.+.+|.|+++|+.+++.. .. +.... --
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~-----------------------~~~l~~~~-------------Fg 98 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPV-----------------------WMERLGNI-------------FA 98 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCS-----------------------EEEECTTC-------------CE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEE-----------------------eEECCCCc-------------ce
Confidence 347888874 566667778888999999988743 11 11110 01
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCC
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~ 195 (490)
-.+++. ++..+++.-.++.+.+||..+.+....+..... ...+.++++
T Consensus 99 eGit~~---g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------------------GwGLt~Dg~----------- 146 (268)
T 3nok_A 99 EGLASD---GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE------------------GWGLCYWNG----------- 146 (268)
T ss_dssp EEEEEC---SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC------------------CCCEEEETT-----------
T ss_pred eEEEEe---CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc------------------eeEEecCCC-----------
Confidence 224443 235556666789999999999988776665321 234456777
Q ss_pred CccccCCCCCcEEEeeeecccccccccceeeeecccc-ccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeec
Q 011257 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (490)
Q Consensus 196 ~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~ 273 (490)
.|+.+..++.|.++| .+.............+. -..++.+.|. +|+.++.. .+..|.+.|.+ .++....++.
T Consensus 147 -~L~vSdGs~~l~~iD----p~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~-TG~V~~~Idl 219 (268)
T 3nok_A 147 -KLVRSDGGTMLTFHE----PDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA-TGTVVGVIDA 219 (268)
T ss_dssp -EEEEECSSSEEEEEC----TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT-TCBEEEEEEC
T ss_pred -EEEEECCCCEEEEEc----CCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC-CCcEEEEEEC
Confidence 455555688888887 22211111111110111 1234566666 77766666 68899999998 5555565554
Q ss_pred CCC---c---cCCCCCceEEEEEcCCCCcEEEEEe
Q 011257 274 KPA---N---MEDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 274 ~~~---~---~~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
... . ........+.|+++|++.++|+||-
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 310 0 1112356789999998867777763
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.37 E-value=0.00056 Score=61.34 Aligned_cols=194 Identities=11% Similarity=0.048 Sum_probs=105.7
Q ss_pred ceeEEEecCCCCEEEEe-cCC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 235 HINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
.+..+++.++++++++. ... .|..++..+. ....+... . .......++..+++ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g-~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-TVETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-CEEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCC-eEEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 35678888998866665 322 3666665533 22222211 1 12223455555655 5555555689999999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCc--eeeeeeeccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEHLRP 387 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~--~~~~~~~~~~~~ 387 (490)
...++.. +......-.. .. ..........+ +|++++|..++ .+.|..+++...+.. ...+.....
T Consensus 145 ~~~~~~~---v~~~~~~~~~--~~-~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~--- 213 (306)
T 2p4o_A 145 VVQPSGS---IWLEHPMLAR--SN-SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN--- 213 (306)
T ss_dssp TTTTEEE---EEEECGGGSC--SS-TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC---
T ss_pred CCCCcEe---EEEECCcccc--cc-ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCC---
Confidence 8754210 0000000000 00 00000123445 78888777663 389999998742221 111111000
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCcee-eeEeccCCCceEEEEEc---cCCCCCCCCcc
Q 011257 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGSL 461 (490)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~v~~~~~s---p~~~~~~~~~~ 461 (490)
-..++++++|++.++....+.|.+++.. |+.. +..+........+++|. ||+.....++.
T Consensus 214 -------------P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 214 -------------IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp -------------CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred -------------CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 1278999999988877778899999976 5442 11233333568999999 78766555543
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.37 E-value=4.2e-05 Score=65.35 Aligned_cols=182 Identities=11% Similarity=-0.018 Sum_probs=114.5
Q ss_pred cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
.....+.|+. +.++.+. .+|.|+.+|+++.+....+ +. . ...--.+++. +.++++..-.++.+.+||.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~-----~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RL-----G-NIFAEGLASD--GERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--EC-----T-TCCEEEEEEC--SSCEEEEESSSCEEEEEET
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CC-----C-CcceeEEEEe--CCEEEEEEccCCEEEEEEC
Confidence 4446788873 4444444 7888999999965544332 11 1 1111234444 3356666677999999999
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (490)
.+.+.. .++.... .-..++ +|++.|+.++ .+.|.++|..+ .+.+.++........
T Consensus 124 ~Tl~~~----~ti~~~~-------------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~---- 179 (268)
T 3nok_A 124 MPPQRE----RTTRYSG-------------EGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP---- 179 (268)
T ss_dssp TTTEEE----EEEECSS-------------CCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE----
T ss_pred CcCcEE----EEEeCCC-------------ceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc----
Confidence 987753 4444321 113344 5677777764 58999999997 788877766442210
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC-------------CCceEEEEEccCCCCCCC
Q 011257 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~~~~ 458 (490)
+..+..+.|. +|++.+..-.++.|.+.|.++|+. +..+... .+-.+.+|++|++.....
T Consensus 180 ------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 180 ------VELINELECA-NGVIYANIWHSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp ------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred ------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 1112356777 776665555688999999999986 3444321 245688999998775443
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.31 E-value=0.00035 Score=59.15 Aligned_cols=191 Identities=12% Similarity=0.126 Sum_probs=111.6
Q ss_pred ccEEEEEECCCCCEEEEecCC--CcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 36 DIISAIEFDKSGDHLATGDRG--GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
.-...+.|++ +.+..+.+.+ ..|+.+|+.+++.. ....-. .
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~-----------------------~~~~l~-------------~ 63 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRIL-----------------------QRAEVP-------------P 63 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEE-----------------------EEEECC-------------T
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEE-----------------------EEEeCC-------------C
Confidence 4567899987 5555555554 48999999988732 111100 1
Q ss_pred ce--eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 114 KI--NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 114 ~V--~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
.. -.+++. ++..++..-.++.+.++|..+.+....+..... ...+.++++
T Consensus 64 ~~fgeGi~~~---~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~------------------Gwglt~dg~------- 115 (243)
T 3mbr_X 64 PYFGAGIVAW---RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE------------------GWALTSDDS------- 115 (243)
T ss_dssp TCCEEEEEEE---TTEEEEEESSSSEEEEEETTTTEEEEEEECSSC------------------CCEEEECSS-------
T ss_pred CcceeEEEEe---CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC------------------ceEEeeCCC-------
Confidence 12 123333 244555667789999999999988777665422 234556676
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccc-cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceee
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~ 269 (490)
.|+.+..++.|.++| .+.............+.. ..++.+.+. +|+.++.. .+..|.+.|.+ .++...
T Consensus 116 -----~L~vSdgs~~l~~iD----p~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~-tG~V~~ 184 (243)
T 3mbr_X 116 -----HLYMSDGTAVIRKLD----PDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA-SGKVVA 184 (243)
T ss_dssp -----CEEEECSSSEEEEEC----TTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT-TCBEEE
T ss_pred -----EEEEECCCCeEEEEe----CCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC-CCCEEE
Confidence 455555588898888 222111111111101111 234455554 67666666 68899999998 455555
Q ss_pred eeecCCCc--c----CCCCCceEEEEEcCCCCcEEEEEe
Q 011257 270 IVDVKPAN--M----EDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 270 ~~~~~~~~--~----~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
.++..... . .......+.|+++|++.++++||-
T Consensus 185 ~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 185 WIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55543110 0 112346789999998856777763
No 257
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.0025 Score=57.36 Aligned_cols=247 Identities=7% Similarity=-0.033 Sum_probs=135.5
Q ss_pred CeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecc
Q 011257 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS 215 (490)
Q Consensus 136 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~ 215 (490)
..|+..|+.+.....+.... ..+..++|.+++.. ..++....+.|..++ ...
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~----------------~~p~g~~~d~~~~~-----------ly~~D~~~~~I~~~~-~~g 61 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNL----------------RNVVALDTEVASNR-----------IYWSDLSQRMICSTQ-LDR 61 (316)
T ss_dssp SSEEEEETTSCCCEEEECSC----------------SSEEEEEEETTTTE-----------EEEEETTTTEEEEEE-C--
T ss_pred CeEEEEECCCcceEehhcCC----------------CceEEEEEEeCCCE-----------EEEEECCCCcEEEEE-CCC
Confidence 56888898887654433211 12337788876652 444555667888776 221
Q ss_pred cccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC
Q 011257 216 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 293 (490)
.. ............-.....+++.+.+..|+.+ ..+.|.+.++.. .....++ .........++++|.
T Consensus 62 ~~---~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~-------~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 62 AH---GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF-------RENGSKPRAIVVDPV 130 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE-------ECTTCCEEEEEEETT
T ss_pred CC---CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE-------ECCCCCcceEEeCCC
Confidence 00 0000111111112345788998765555544 688999999873 3222221 112345789999996
Q ss_pred CCcEEEEEeCC-CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEecc
Q 011257 294 HCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDIN 370 (490)
Q Consensus 294 ~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~ 370 (490)
+..++.+.... +.|...++..... ..+.... ......++++|++..|..++ .+.|..+|++
T Consensus 131 ~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~~~-----------~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 131 HGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEccCCCCeEEEEcCCCCCe-----EEEEECC-----------CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 63555554433 7888888764321 1221111 13568899999887777663 3899999987
Q ss_pred CCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC-CCceEEEEE
Q 011257 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQ 449 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~ 449 (490)
+.....+....... .. -..+++. .+.++++-...+.|..++..+|+. ...+... ..+.--..+
T Consensus 195 --g~~~~~~~~~~~~~---------~~---P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~-~~~i~~~~~~p~~i~v~ 258 (316)
T 1ijq_A 195 --GGNRKTILEDEKRL---------AH---PFSLAVF-EDKVFWTDIINEAIFSANRLTGSD-VNLLAENLLSPEDMVLF 258 (316)
T ss_dssp --SCSCEEEEECTTTT---------SS---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCC-CEEEECSCSCCCCEEEE
T ss_pred --CCceEEEeecCCcc---------CC---cEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc-eEEEecCCCCceEEEEe
Confidence 33333332211000 00 1266775 455555666678999999887765 3444333 233322345
Q ss_pred ccCC
Q 011257 450 TPSR 453 (490)
Q Consensus 450 sp~~ 453 (490)
++..
T Consensus 259 ~~~~ 262 (316)
T 1ijq_A 259 HNLT 262 (316)
T ss_dssp SGGG
T ss_pred cccc
Confidence 5544
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00037 Score=59.00 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=112.3
Q ss_pred cceeEEEecCCCCEEEEe-c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 234 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
.....+.|+. +.++.+. . ...|+.+|+.+.+. ...+. +..+.- --.+++. +.+++...-.++.+.+|
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~-----l~~~~f-geGi~~~--~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAE-----VPPPYF-GAGIVAW--RDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEE-----CCTTCC-EEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEe-----CCCCcc-eeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 4566888987 4444443 3 45999999995544 33332 222211 1234443 32566666779999999
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeeccccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
|..+.+.. .++.... .=..++ +|++.|+.++ ++.|.++|..+ .+.+.++........
T Consensus 91 D~~tl~~~----~ti~~~~-------------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~-- 148 (243)
T 3mbr_X 91 DLATLTPR----ARFRYPG-------------EGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRP-- 148 (243)
T ss_dssp ETTTTEEE----EEEECSS-------------CCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEE--
T ss_pred ECCcCcEE----EEEeCCC-------------CceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcc--
Confidence 99987653 4444321 113444 5666666653 48999999997 788877766542110
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC-------------CCceEEEEEccCCCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPSR 456 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~~ 456 (490)
+..+..+.+. +|+..+..-.+..|.+.|.++|+. +..+... .+-.+.+|++|++...
T Consensus 149 --------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 149 --------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred --------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 0112356665 777666555678999999999986 3444311 2356889999987644
Q ss_pred CC
Q 011257 457 PL 458 (490)
Q Consensus 457 ~~ 458 (490)
..
T Consensus 219 fV 220 (243)
T 3mbr_X 219 FV 220 (243)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 259
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.23 E-value=2.3e-07 Score=86.10 Aligned_cols=142 Identities=6% Similarity=-0.016 Sum_probs=71.0
Q ss_pred CCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcccccccc
Q 011257 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (490)
Q Consensus 244 ~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 322 (490)
++..++++ .|+.|+.||..+++...+.- . ..+.+..+.+++ .++++++.||.|+.||..+++...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~------~----~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w--- 73 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK------E----DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLT--- 73 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE------C----CCSCCCC------CCEEECTTTCCEEEC-----CCSE---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec------C----CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceee---
Confidence 46677777 89999999998776654431 1 223333345566 678888899999999998886532
Q ss_pred ceeccccCCCccccccccccceE-EEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccc
Q 011257 323 KLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~h~~~i~-~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
.+..+.. ..+. +..+. ++..++++ .++.|+.||.++ ++.+..+..+.
T Consensus 74 -~~~~~~~-----------~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----------------- 122 (369)
T 2hz6_A 74 -KLPFTIP-----------ELVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----------------- 122 (369)
T ss_dssp -ECSCCHH-----------HHHTTCSCC------CCCCEEEEEEEEECCC------------------------------
T ss_pred -eeeccCc-----------cccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC-----------------
Confidence 2211100 0000 01111 23345554 569999999997 77776665443
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
...++|++..|++++.|+.|+.||.++|+.
T Consensus 123 --~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 123 --ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSC
T ss_pred --cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 123556888999999999999999999976
No 260
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.22 E-value=0.00092 Score=57.45 Aligned_cols=217 Identities=10% Similarity=0.083 Sum_probs=116.3
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~ 254 (490)
.++|.|++.. +.++...++.|...| . + .+..+.+..+-......|++.+++.++++. .++
T Consensus 31 Gla~~~~~~~-----------L~aV~d~~~~I~~ld-~---~----g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 31 SLTWSAQSNT-----------LFSTINKPAAIVEMT-T---N----GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp EEEEETTTTE-----------EEEEEETTEEEEEEE-T---T----CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTT
T ss_pred eeEEeCCCCE-----------EEEEECCCCeEEEEe-C---C----CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCC
Confidence 6888888763 344456677777666 1 1 112222211112456788899988877777 688
Q ss_pred cEEEEEcCCCCc--eeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCC
Q 011257 255 RINLWNLEISNQ--SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 255 ~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
.+.++++..... .......... ........-.++|+|.+ ..|.++.......+|.+. +......+..+....
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~-g~~~~~~l~i~~~~~--- 165 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVN-GLLSSNELHISKDKA--- 165 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCS-SCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEE-STTCSSCCEEEECHH---
T ss_pred cEEEEEcCCCCeeeeeeeeccccc-cccccCCcceEEEeCCC-CEEEEEECcCCceEEEEc-ccccCCceeeecchh---
Confidence 999999875553 1222211100 11234557899999998 555555554444454443 110000011111100
Q ss_pred ccccccccccceEEEEECCCCC-EEEEEcC-CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 333 TRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~-~l~sg~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
.. -..+...+.+++++|... +++.++. +.+.++|.+ ++.+..+.-..+...... .+..--.++|.++|
T Consensus 166 ~~--~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~------~~~qpEGia~d~~G 235 (255)
T 3qqz_A 166 LQ--RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSH------NIKQAEGVAMDASG 235 (255)
T ss_dssp HH--HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSS------CCCSEEEEEECTTC
T ss_pred hc--cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCccc------ccCCCCeeEECCCC
Confidence 00 000113578999999544 4444543 899999987 666666554432100000 00001279999999
Q ss_pred CEEEEeecCCeEEEEecC
Q 011257 411 GRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~ 428 (490)
++.++ ++-+.++++.-.
T Consensus 236 ~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 236 NIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp CEEEE-ETTTEEEEEEC-
T ss_pred CEEEE-cCCceEEEEEec
Confidence 85554 777777777644
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.19 E-value=0.0016 Score=63.93 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=49.6
Q ss_pred CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccC
Q 011257 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (490)
Q Consensus 361 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~ 440 (490)
+|.|..||+.+ ++.+-........ ..-.....+.+++.|+.||.++.||.++|+. +-.++..
T Consensus 465 ~G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~~-lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTG 526 (582)
T ss_dssp SEEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCCE-EEEEECS
T ss_pred cceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCCE-EEEecCC
Confidence 37888899987 7766555433211 1112223567788899999999999999987 4555443
Q ss_pred CCce-EEEEEccCCCCCCC
Q 011257 441 KNPM-RRQVQTPSRPSRPL 458 (490)
Q Consensus 441 ~~~v-~~~~~sp~~~~~~~ 458 (490)
.... .-+.+..+|+....
T Consensus 527 ~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 527 SGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp SCCCSCCEEEEETTEEEEE
T ss_pred CCcccCceEEEECCEEEEE
Confidence 3221 23566667754443
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.16 E-value=0.0072 Score=59.31 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=46.5
Q ss_pred EEEecCCCCEEEEe-cC----------------CcEEEEEcCCCCceeeeeecCCCccCCC--------CCceEEEEEc-
Q 011257 238 SISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPANMEDL--------TEVITSAEFH- 291 (490)
Q Consensus 238 ~i~~~~~~~~l~~~-~d----------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~- 291 (490)
.+++.++..+++.+ .+ +.|..+|.++++...+. +...| ..++. +...
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~------q~~~~d~wd~d~~~~p~l-~d~~~ 317 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY------QKTPHDEWDYAGVNVMML-SEQKD 317 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE------ESSTTCSSCCCCCCCCEE-EEEEC
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe------ecCCCccccccCCCccEE-Eeccc
Confidence 34566677777776 44 37888999876655432 12222 12222 2222
Q ss_pred CCCC--cEEEEEeCCCeEEEEeCCCccccc
Q 011257 292 PTHC--NMLAYSSSKGSIRLIDMRQSALCD 319 (490)
Q Consensus 292 p~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 319 (490)
.+|. ..++.++.+|.+.++|.++++.+.
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 4452 357778899999999999998653
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.01 Score=60.92 Aligned_cols=335 Identities=9% Similarity=0.000 Sum_probs=174.5
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCcccccccc-ccCCcccceeeeeeecc
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~h~~~~~~~~~~~~~~ 113 (490)
...|.++...++|.+ ..|+..+-|.+++..+.... .... +.+..+... .... + ...
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~------------~~f~~~~~~~~~~~--------l-~~~ 313 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFL-LPEQ------------IRFEFIREGDNNYS--------L-SNA 313 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC----------------------CEEECBCSSTTS--------B-SSS
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeee-eeec------------cccccccCCCCCCC--------C-CCC
Confidence 356999999988864 44555456888887655421 0000 000000000 0000 0 014
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeecc-CCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.|.++...+ +| .|-.|+.++-|..++.............. ..........+. ++...++|.
T Consensus 314 ~v~~i~~D~--~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~-------- 375 (781)
T 3v9f_A 314 SARYIFQDS--FN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-------SVCDDGQGK-------- 375 (781)
T ss_dssp CEEEEEECS--SC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-------EEEECTTSC--------
T ss_pred eEEEEEEeC--CC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-------EEEEcCCCC--------
Confidence 588887753 44 46677777788889887765444321110 000001111111 333444443
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~ 272 (490)
|..|+.++-|..++ ...... ...... .......|.++...+++.+.+...++-+..++..+. .. ..+.
T Consensus 376 -----lWigt~~~Gl~~~~-~~~~~~---~~~~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~-~~-~~~~ 443 (781)
T 3v9f_A 376 -----LWIGTDGGGINVFE-NGKRVA---IYNKEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK-KF-QIIE 443 (781)
T ss_dssp -----EEEEEBSSCEEEEE-TTEEEE---ECC------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC-EE-EECC
T ss_pred -----EEEEeCCCcEEEEE-CCCCeE---EEccCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC-cE-EEec
Confidence 56666666677776 111000 000000 012235688898888888777556566888887633 22 2110
Q ss_pred cCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC
Q 011257 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (490)
Q Consensus 273 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~ 352 (490)
. . ......|.++...+++ . |..|+. +-|..||..+++.. .+...... ......|.++...++
T Consensus 444 ~--~--~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 444 L--E--KNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVI-----HHYDTSNS------QLLENFVRSIAQDSE 505 (781)
T ss_dssp S--T--TTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCC-----EEECTTTS------SCSCSCEEEEEECTT
T ss_pred c--C--CCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEE-----ecccCccc------ccccceeEEEEEcCC
Confidence 0 0 1234678999988887 4 444555 55888998776431 22111000 001256899999999
Q ss_pred CCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 353 g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
|++.++...+-+..||..+ ..+..+...... ....|.++...++|.+.++. .+|.|..||..+++.
T Consensus 506 g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l-----------~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 506 GRFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF-----------CSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY 571 (781)
T ss_dssp CCEEEEESSSCEEEECTTC--CEEEEECTTTTC-----------SCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC
T ss_pred CCEEEEEcCCCEEEEeCCC--CeEEEccCCCCC-----------CCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE
Confidence 9888776544577788764 333333221111 00125688888888876644 466658899887654
Q ss_pred eeeEecc----CCCceEEEEEccCCCCC
Q 011257 433 ESTTLEA----SKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 433 ~~~~~~~----~~~~v~~~~~sp~~~~~ 456 (490)
..+.. ....|.++...++|..-
T Consensus 572 --~~~~~~~gl~~~~i~~i~~d~~g~lW 597 (781)
T 3v9f_A 572 --QVFQRKEGLPNTHIRAISEDKNGNIW 597 (781)
T ss_dssp --EEECGGGTCSCCCCCEEEECSSSCEE
T ss_pred --EEccccCCCCCceEEEEEECCCCCEE
Confidence 22221 12356777776666543
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.16 E-value=0.00091 Score=68.12 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=24.8
Q ss_pred cEEEEEEC-CCCCEEEEecC-C----CcEEEEEecCC
Q 011257 37 IISAIEFD-KSGDHLATGDR-G----GRVVLFERTDT 67 (490)
Q Consensus 37 ~V~~~~~s-~dg~~latg~~-d----g~v~iwd~~~~ 67 (490)
.+...+|| |||++||.+.. + ..|+++|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g 211 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP 211 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence 68889999 99999886543 2 25999999877
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.13 E-value=0.00061 Score=68.33 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=24.2
Q ss_pred EEEEeecCCCcEEEEEe-CcCeEEEEEccCCeEEEEe
Q 011257 117 KIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVF 152 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~ 152 (490)
++++. .++.+++.|+ .+..+.+||..+.+.....
T Consensus 247 ~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~ 281 (656)
T 1k3i_A 247 GISMD--GNGQIVVTGGNDAKKTSLYDSSSDSWIPGP 281 (656)
T ss_dssp EEEEC--TTSCEEEECSSSTTCEEEEEGGGTEEEECC
T ss_pred cccCC--CCCCEEEeCCCCCCceEEecCcCCceeECC
Confidence 34554 3677888887 4568999999998766543
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.0026 Score=59.95 Aligned_cols=267 Identities=9% Similarity=0.020 Sum_probs=133.1
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
....|++.|.. +..|+++...+.|+.+|+.++.+..+... ...|..++++++|+
T Consensus 138 ~P~~lavdp~~-~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------------~~~P~~ia~d~~G~--------- 191 (430)
T 3tc9_A 138 GAVWLSFDPKN-HNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------------LSKVRTICWTHEAD--------- 191 (430)
T ss_dssp CCCEEEEETTE-EEEEEEEEBTEEEEEEETTTTEEEEEECC----------------CSCEEEEEECTTSS---------
T ss_pred CCCEEEECCCC-CCeEEEEeCCCcEEEEECCCCEEEEEecC----------------CCCcceEEEeCCCC---------
Confidence 35678888521 23455555448899999988876554331 12344789999998
Q ss_pred CCCccccCCC-CC----cEEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCc
Q 011257 194 SNDSSFPPGG-VS----SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ 266 (490)
Q Consensus 194 ~~~~l~~~~~-~g----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~ 266 (490)
.|+++.. ++ .+...+ ...... ....... ......++++| ++.++++- ..+.|..++.....
T Consensus 192 ---~lyvad~~~~~~~~~v~~~~--~~g~~~-~~~~l~~-----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~- 259 (430)
T 3tc9_A 192 ---SMIITNDQNNNDRPNNYILT--RESGFK-VITELTK-----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE- 259 (430)
T ss_dssp ---EEEEEECCSCTTSEEEEEEE--GGGTSC-SEEEEEE-----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-
T ss_pred ---EEEEEeCCCCcccceEEEEe--CCCcee-eeeeecc-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-
Confidence 3333322 22 122222 111110 0011111 13456788999 67666665 68899999987332
Q ss_pred eeeeeecCCCccCCCCCceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCCccccccccceecccc-CCCccc--ccccccc
Q 011257 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRS--FFTEIIA 342 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~h~~ 342 (490)
...+. ... .......++|+|++ + ++++-...+.|..++.............+.+.. ...... .....-.
T Consensus 260 ~~~~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~ 332 (430)
T 3tc9_A 260 TTPLF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH 332 (430)
T ss_dssp EEEEE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred EEEEE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence 21221 111 12456799999999 6 566666788999987653210000012222210 000000 0000001
Q ss_pred ceE-EEEEC--------CCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecc--ccccccc-cccCCCccceeeEEEcCC
Q 011257 343 SIS-DIKFA--------RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLSGD 409 (490)
Q Consensus 343 ~i~-~l~~s--------p~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s~d 409 (490)
... .++.. ++|.++++-. .+.|+.++.. + .+.++.+... ....... ......+..-..++++|+
T Consensus 333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~--G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ--G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT--S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred CCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC--C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence 223 45553 3455555533 3788888843 4 3444433210 0000000 000001111248999994
Q ss_pred -CCEEEEeecCCeEEEEecC
Q 011257 410 -GGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 410 -~~~l~s~~~dg~i~vw~~~ 428 (490)
+.++++-...+.|+.++++
T Consensus 410 ~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 410 RECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEEccC
Confidence 5555555566788887764
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.11 E-value=0.0062 Score=56.71 Aligned_cols=254 Identities=7% Similarity=-0.027 Sum_probs=140.0
Q ss_pred EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcE
Q 011257 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (490)
Q Consensus 128 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v 207 (490)
+|+.+. ...|+..++.......+.... ..+..++|.+.... +.++-...+.|
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~----------------~~~~~l~~d~~~~~-----------lywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNL----------------RNVVALDTEVASNR-----------IYWSDLSQRMI 136 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSC----------------SCEEEEEEETTTTE-----------EEEEETTTTEE
T ss_pred eeEEec-cceeEEEccCCcceeEecccc----------------CcceEEeeeeccCc-----------eEEEecCCCeE
Confidence 444443 468888898876544432211 22337888876552 34455556777
Q ss_pred EEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCce
Q 011257 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (490)
Q Consensus 208 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (490)
..++ ...... .................+++.+.+..|+.. ..+.|.+.++.... ...++ .......
T Consensus 137 ~~~~-~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~-------~~~~~~P 204 (400)
T 3p5b_L 137 CSTQ-LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKP 204 (400)
T ss_dssp EEEE-C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEE-------ECSSCCE
T ss_pred EEEE-cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEE-------eCCCCCc
Confidence 7766 221110 000111112222456788998855555554 57889999887332 22221 1223457
Q ss_pred EEEEEcCCCCcEEEEEeC-CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CC
Q 011257 286 TSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM 362 (490)
Q Consensus 286 ~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~ 362 (490)
..+++.|.+..++.+-.. .+.|...++..... ..+.... ......|++++++..|+.++ .+
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~~~~-----------l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEEECC-----------CCceEEEEEEeCCCEEEEEECCCC
Confidence 899999966244444423 47888888875431 1221111 13568899999888777764 38
Q ss_pred eEEEEeccCCCCceeeeeee-ccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCC
Q 011257 363 TLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (490)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~ 441 (490)
.|..+|++ +.....+... ..... -..+++. .+.++++-...+.|..++..+|+. +..+....
T Consensus 269 ~I~~~d~d--G~~~~~~~~~~~~l~~-------------P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~-~~~i~~~~ 331 (400)
T 3p5b_L 269 SISSIDVN--GGNRKTILEDEKRLAH-------------PFSLAVF-EDKVFWTDIINEAIFSANRLTGSD-VNLLAENL 331 (400)
T ss_dssp EEEEEETT--SCCCEEEEECSSTTSS-------------EEEEEEE-TTEEEEEESSSCSEEEEESSSCCC-CEEEECSC
T ss_pred EEEEEeCC--CCccEEEEeCCCCCCC-------------CEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc-eEEEecCC
Confidence 99999987 3333333221 11100 1256663 344555555678899999888876 34554444
Q ss_pred CceEEE-EEccCCC
Q 011257 442 NPMRRQ-VQTPSRP 454 (490)
Q Consensus 442 ~~v~~~-~~sp~~~ 454 (490)
.....+ .++|..+
T Consensus 332 ~~p~~i~v~~~~~q 345 (400)
T 3p5b_L 332 LSPEDMVLFHNLTQ 345 (400)
T ss_dssp SCEEEEEEESGGGS
T ss_pred CCCceEEEEeeccC
Confidence 434444 4555443
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.10 E-value=6.4e-05 Score=76.61 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=71.6
Q ss_pred ceeEEEec-CCCCEEEEe-c-CC----cEEEEEcCCC-CceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC--
Q 011257 235 HINSISNN-SDGETFISA-D-DL----RINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 304 (490)
Q Consensus 235 ~v~~i~~~-~~~~~l~~~-~-d~----~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-- 304 (490)
.+...+|+ |||++||.+ + +| .|+++|+.++ ..... .+ ......++|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~---~~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KV---SGTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CE---EEECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cc---cCceeeEEEecCC-CEEEEEEECCC
Confidence 56788999 999999875 2 33 4999999855 32110 11 1123468899999 666666654
Q ss_pred ---CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc----CCeEEEEeccC
Q 011257 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINM 371 (490)
Q Consensus 305 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~----d~~i~iwd~~~ 371 (490)
..|+++++.++.... ...+.... ......+.|||||++|+... ...|.++|+..
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~~-----------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEHN-----------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECCC-----------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCCEEEEEECCCCchhc--EEEEecCC-----------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 368888887654211 11222111 02356789999999988642 26788888875
No 269
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.09 E-value=0.0049 Score=58.06 Aligned_cols=265 Identities=10% Similarity=0.012 Sum_probs=135.4
Q ss_pred eeEEEEeec-CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 115 INKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 115 V~~v~~~p~-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
...|+|.|+ .++ .|+.+...+.|+.+|..++.+..+... ...|..++++++|+
T Consensus 141 P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~----------------~~~P~giavd~dG~--------- 194 (433)
T 4hw6_A 141 IWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTN----------------IGQCADVNFTLNGD--------- 194 (433)
T ss_dssp CCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCC----------------CSCEEEEEECTTCC---------
T ss_pred CceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecC----------------CCCccEEEECCCCC---------
Confidence 567899863 234 455554448999999988876655331 12344889999998
Q ss_pred CCCccccCCCC---Cc-EEEeeeecccccccccceeeeeccccccceeEEEecC-CCCEEEEe-cCCcEEEEEcCCCCce
Q 011257 194 SNDSSFPPGGV---SS-LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 267 (490)
Q Consensus 194 ~~~~l~~~~~~---g~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~~wd~~~~~~~ 267 (490)
++++.... .. +...+ .. ......... ..-.....++++| ++.++++- .++.|+.++..+....
T Consensus 195 ---lyVad~~~~~~~~gv~~~~--~~-~~~~~~~~~-----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~ 263 (433)
T 4hw6_A 195 ---MVVVDDQSSDTNTGIYLFT--RA-SGFTERLSL-----CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT 263 (433)
T ss_dssp ---EEEEECCSCTTSEEEEEEC--GG-GTTCCEEEE-----EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred ---EEEEcCCCCcccceEEEEE--CC-CCeeccccc-----cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence 23332211 11 11111 11 100000011 1123456788999 66655555 6788999988733321
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCc-EEEEEeCCCeEEEEeCCC--ccccccccceeccc-cCCCccc--cccccc
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTRS--FFTEII 341 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~h~ 341 (490)
..+.. . +.......++|+|++ + ++++-...+.|+.+++.. +... ....+.+. ....... .....-
T Consensus 264 ~~~~~-----~-~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 264 EEEVM-----M-DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp EEEEE-----C-SCCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBC
T ss_pred EEEec-----c-CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEE
Confidence 22221 1 112223479999999 6 556666678999988763 2210 01122221 0000000 000011
Q ss_pred cceEEEEE---------CCCCCEEEEEc-CCeEEEEeccCCCCceeeeeeecc--ccccccc-cccCCCccceeeEEEc-
Q 011257 342 ASISDIKF---------ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLS- 407 (490)
Q Consensus 342 ~~i~~l~~---------sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s- 407 (490)
.....+++ .++|.++++-. .+.|+.++.. + .+.++.+... ....... ......+..-..++++
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 24577899 77777666644 4889998853 4 4444443321 0000000 0000111112478898
Q ss_pred CCCCEEEEeecCCeEEEEecC
Q 011257 408 GDGGRVATGSYSNLFRVFGCS 428 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~ 428 (490)
++|.++++=...+.|+.++++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 566666665567788887764
No 270
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.09 E-value=0.00082 Score=67.34 Aligned_cols=63 Identities=6% Similarity=0.071 Sum_probs=41.9
Q ss_pred CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeeeee
Q 011257 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
+|.|..||+.+++...+ .... .+.....+...+.+++.++ ++.++.||.++ ++.+..++..
T Consensus 437 ~g~l~A~D~~tG~~~W~----~~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t-G~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWK----VPYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEEEE----EEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEeCCCCcEEEE----ccCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhc-ChhheEecCC
Confidence 47899999999876432 1111 1222223344577777775 69999999997 8888888765
Q ss_pred cc
Q 011257 383 EH 384 (490)
Q Consensus 383 ~~ 384 (490)
..
T Consensus 499 ~~ 500 (668)
T 1kv9_A 499 SG 500 (668)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=0.014 Score=59.74 Aligned_cols=331 Identities=9% Similarity=0.037 Sum_probs=169.6
Q ss_pred ccEEEEEECCCCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
..|.++...++|.+.+. +.+ -+.+||..++... .+....... ..+ ....|
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~------------------------~~~~~~~~~---~~l-~~~~i 260 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFT------------------------NFHNNPGNI---HGA-LSSYI 260 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEE------------------------C---------------CCCCE
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEE------------------------EEEcCCCcc---ccc-cCceE
Confidence 56899999998876554 344 5888887654311 000000000 000 01458
Q ss_pred eEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeee------ccCCCcCCCCCCccccccccCceEEeccCCccccc
Q 011257 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW------NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~ 189 (490)
.++... .+| .+..|+..+-|.++|..++........ ............+ .++...++|.
T Consensus 261 ~~i~~d--~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v-------~~i~~D~~g~----- 325 (781)
T 3v9f_A 261 FSIKQL--KDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASA-------RYIFQDSFNN----- 325 (781)
T ss_dssp EEEEEC--TTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCE-------EEEEECSSCC-----
T ss_pred EEEEEC--CCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeE-------EEEEEeCCCC-----
Confidence 888775 344 566677656788899887765433220 0000000111111 1333444443
Q ss_pred cccCCCCccccCCCCCcEEEeeeeccccccccccee--eeeccccccceeEEEecCCCCEEEEecCCcEEEEEcCCCCce
Q 011257 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR--RIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (490)
Q Consensus 190 ~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~ 267 (490)
|.+|+.++-|..++ ............. .....-....|.++...+++.+.+...++-|..|+..+. .
T Consensus 326 --------lWigt~~~Gl~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~-~- 394 (781)
T 3v9f_A 326 --------IWIGTWGGGINFIS-NAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKR-V- 394 (781)
T ss_dssp --------EEEEEBSSCEEEEC-SSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEE-E-
T ss_pred --------EEEEecCCeEEEeC-CCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCC-e-
Confidence 56666666666665 1111000000000 000011235688999888887766555666888987632 1
Q ss_pred eeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEE
Q 011257 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l 347 (490)
+..+. . ........|.++...+++ .+ ..|+.++-+..+|..+++. ..+.... .....|.++
T Consensus 395 ~~~~~-~--~~~~~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~~~~~~~~~-----~~~~~~~---------~~~~~v~~i 455 (781)
T 3v9f_A 395 AIYNK-E--NRELLSNSVLCSLKDSEG-NL-WFGTYLGNISYYNTRLKKF-----QIIELEK---------NELLDVRVF 455 (781)
T ss_dssp EECC--------CCCSBEEEEEECTTS-CE-EEEETTEEEEEECSSSCEE-----EECCSTT---------TCCCCEEEE
T ss_pred EEEcc-C--CCCCCCcceEEEEECCCC-CE-EEEeccCCEEEEcCCCCcE-----EEeccCC---------CCCCeEEEE
Confidence 21110 0 001234678999988887 44 4467767788999876642 2221100 011568999
Q ss_pred EECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 348 ~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
...++|.+.+... +-|..||..+ ++.. .+...... . .....|.++...++|++.+....+| |..|+.
T Consensus 456 ~~d~~g~lwigt~-~Gl~~~~~~~-~~~~-~~~~~~~~--~-------~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 456 YEDKNKKIWIGTH-AGVFVIDLAS-KKVI-HHYDTSNS--Q-------LLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp EECTTSEEEEEET-TEEEEEESSS-SSCC-EEECTTTS--S-------CSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred EECCCCCEEEEEC-CceEEEeCCC-CeEE-ecccCccc--c-------cccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 9998887666555 6788899875 3322 22111100 0 0001256888888888766443344 777888
Q ss_pred CCCceeeeEec----cCCCceEEEEEccCCCCC
Q 011257 428 SEGSAESTTLE----ASKNPMRRQVQTPSRPSR 456 (490)
Q Consensus 428 ~~~~~~~~~~~----~~~~~v~~~~~sp~~~~~ 456 (490)
.+++. ..+. .....|.++...++|..-
T Consensus 523 ~~~~~--~~~~~~~~l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 523 DMQLV--RKFNQYEGFCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp TCCEE--EEECTTTTCSCSCEEEEEECTTSCEE
T ss_pred CCCeE--EEccCCCCCCCCeeEEEEECCCCCEE
Confidence 76643 2222 123467777777766543
No 272
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.0063 Score=57.62 Aligned_cols=278 Identities=9% Similarity=0.021 Sum_probs=141.2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEE-------eccCCcc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-------MANGGCG 186 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------s~~g~~~ 186 (490)
....|+|.|..++.++++....+.|++.|+.++.+..+...... ....|..++| +++|+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~------------~~~~p~~ia~~~~~~~~d~~G~-- 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI------------PTNRIRSIAFNKKIEGYADEAE-- 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS------------SCSBEEEEEECCCBTTTBCTTC--
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc------------ccCCCcEEEEeecccccCCCCC--
Confidence 35688998732344555555557899999999887776543210 1123447888 88887
Q ss_pred ccccccCCCCccccCCCCC-----cEEEeeeeccccccccc----ceeeeeccccccceeEEEecCCCCEEE-Ee-cCCc
Q 011257 187 ERNFGCASNDSSFPPGGVS-----SLRLPVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLR 255 (490)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~g-----~v~iw~~~~~~~~~~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~ 255 (490)
.|+++...+ ...++-+....+..... .....+ .....++++|++..|+ +- .++.
T Consensus 206 ----------~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 206 ----------YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp ----------EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTE
T ss_pred ----------EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCCE
Confidence 344433332 22232211111111110 111122 2345788999655555 44 7888
Q ss_pred EEEEEcC-------CCCc------e----e-eeeecCCCccCCCCCceEEEEEcCCCCcE-EEEEeCCCeEEEEeCCC--
Q 011257 256 INLWNLE-------ISNQ------S----F-NIVDVKPANMEDLTEVITSAEFHPTHCNM-LAYSSSKGSIRLIDMRQ-- 314 (490)
Q Consensus 256 i~~wd~~-------~~~~------~----~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~~~~~dg~i~iwd~~~-- 314 (490)
|..+|+. +... . . .+. .. +.......++|+|++ +. +++=.....|+.+|...
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~-----~~-~~~~~p~~ia~~p~G-~~lYvaD~~~h~I~kid~dg~~ 343 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF-----TI-ADPSWEFQIFIHPTG-KYAYFGVINNHYFMRSDYDEIK 343 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE-----EC-SSSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETTT
T ss_pred EEEEecccccccccCceeecccccccccccceeE-----ec-CCCCCceEEEEcCCC-CEEEEEeCCCCEEEEEecCCCc
Confidence 9999987 3322 0 1 111 11 123456799999999 74 55556678899866543
Q ss_pred ccccccccceecccc-CCCcc--ccccccccceE-EEEEC-------CCCCEEEEEc-CCeEEEEeccCCCCceeeeeee
Q 011257 315 SALCDTHSKLFEEQE-APGTR--SFFTEIIASIS-DIKFA-------RNGRHILSRD-YMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~--~~~~~h~~~i~-~l~~s-------p~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
+... ...++.+.. ..... ......-.... .++.. ++|.++++=. ..+|+.++.. + .+.++-+.
T Consensus 344 ~~~~--~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~--G-~v~TiaG~ 418 (496)
T 3kya_A 344 KEFI--TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE--G-IVSTYAGR 418 (496)
T ss_dssp TEEC--CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT--C-BEEEEEES
T ss_pred ceec--ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC--C-CEEEEecc
Confidence 2110 001222210 00000 00000001233 45554 4555555533 4899999842 4 56666554
Q ss_pred cccc--------ccccc-cccCCCccceeeEEEcCC-CCEEEEeecCCeEEEEecCCCce
Q 011257 383 EHLR--------PKLCD-LYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 383 ~~~~--------~~~~~-~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.... ..... ......+..-..++++++ |.++++=.....||.++++....
T Consensus 419 g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 419 GASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp CTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred cccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 2110 00000 011111222348899996 76666666678899999885543
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.97 E-value=0.00099 Score=66.78 Aligned_cols=283 Identities=10% Similarity=0.013 Sum_probs=137.6
Q ss_pred EEEEeecCCCcEEEEEeCcC-----------eEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCc
Q 011257 117 KIRWCQSANSALYLLSTNDK-----------TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (490)
Q Consensus 117 ~v~~~p~~~~~~l~~~~~dg-----------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 185 (490)
.+++.| .++..++.|+.+. .+.+||..+++............ ..+...++..+|+
T Consensus 190 ~~av~~-~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~------------~~~~~~~~~~~g~- 255 (656)
T 1k3i_A 190 AAAIEP-TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD------------MFCPGISMDGNGQ- 255 (656)
T ss_dssp EEEEET-TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC------------CSSCEEEECTTSC-
T ss_pred eEEEEe-cCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC------------CccccccCCCCCC-
Confidence 445553 2566777776542 57889988876544333221100 0011345667777
Q ss_pred cccccccCCCCccccCC-CCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-c-C-----CcEE
Q 011257 186 GERNFGCASNDSSFPPG-GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D-----LRIN 257 (490)
Q Consensus 186 ~~~~~~~~~~~~l~~~~-~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d-----~~i~ 257 (490)
+++.|+ .+..+.+||..... ....... .. ...-.+++..+++++++.| . + ..+.
T Consensus 256 -----------lyv~GG~~~~~v~~yd~~t~~-----W~~~~~~-~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e 317 (656)
T 1k3i_A 256 -----------IVVTGGNDAKKTSLYDSSSDS-----WIPGPDM-QV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317 (656)
T ss_dssp -----------EEEECSSSTTCEEEEEGGGTE-----EEECCCC-SS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred -----------EEEeCCCCCCceEEecCcCCc-----eeECCCC-Cc-cccccceEEecCCeEEEEeCcccCCcccccce
Confidence 566666 45688998822111 1111111 10 1111345566789998887 2 3 5689
Q ss_pred EEEcCCCCceeeeeec---CCCccCCCCCceEEEEEcCCCCcEEEEEeCCC---------eEEEEeCCCcccccccccee
Q 011257 258 LWNLEISNQSFNIVDV---KPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---------SIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 258 ~wd~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~ 325 (490)
+||..+.. ...+.. .+.....+. ..+..++ .+++.|+.+| .+..||..+..-. ...
T Consensus 318 ~yd~~t~~--W~~~~~~~~~p~~~~~~~-----~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~----~~~ 385 (656)
T 1k3i_A 318 VYSPSSKT--WTSLPNAKVNPMLTADKQ-----GLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV----KSA 385 (656)
T ss_dssp EEETTTTE--EEEETTSCSGGGCCCCTT-----GGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEE----EEE
T ss_pred EeCCCCCc--ceeCCCcccccccccccc-----ceeecCC-ceEEEECCCCcEEEecCccceeeeecCCccee----ecC
Confidence 99987432 222100 000001111 1223444 5666665554 4567777665311 111
Q ss_pred ccccCCCccccccccccceEEEEECC-CCCEEEEEc-CC-----------eEEEEeccCCCCceeee--eeecccccccc
Q 011257 326 EEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YM-----------TLKLWDINMDSGPVATF--QVHEHLRPKLC 390 (490)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~-d~-----------~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 390 (490)
...... .. .......-.++.|.. ++++++.|. ++ .|.+||..+ ....... ......
T Consensus 386 ~~~~~~--~~-~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~mp~~R----- 456 (656)
T 1k3i_A 386 GKRQSN--RG-VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT-SPNTVFASNGLYFAR----- 456 (656)
T ss_dssp EECEET--TE-ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS-CCEEEECTTCCSSCC-----
T ss_pred Cccccc--cc-cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC-CCeeEEccCCCCCCc-----
Confidence 100000 00 000001224455543 677777763 21 677888764 3322211 111110
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecC-----------CeEEEEecCCCceee-eEeccCCCceEEEEEccCCCCCCC
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPL 458 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----------g~i~vw~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~~~~ 458 (490)
. -.+++..|++++++.|+.+ ..+.+||..+++-.. ..+...........+.|++.....
T Consensus 457 ------~---~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~ 527 (656)
T 1k3i_A 457 ------T---FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNG 527 (656)
T ss_dssp ------B---SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEE
T ss_pred ------c---cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEec
Confidence 0 0256677899999999864 468999998775321 111122222334556678876665
Q ss_pred Ccc
Q 011257 459 GSL 461 (490)
Q Consensus 459 ~~~ 461 (490)
++.
T Consensus 528 GG~ 530 (656)
T 1k3i_A 528 GGG 530 (656)
T ss_dssp ECC
T ss_pred CCC
Confidence 553
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.95 E-value=0.018 Score=58.43 Aligned_cols=249 Identities=8% Similarity=-0.025 Sum_probs=133.9
Q ss_pred CcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeee
Q 011257 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV 213 (490)
Q Consensus 134 ~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~ 213 (490)
....|+..++.......+.... ..+..++|.+.... ++++-...+.|..++ +
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~----------------~~~~gl~~d~~~~~-----------lY~sD~~~~~I~~~~-l 453 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNL----------------RNVVALDTEVASNR-----------IYWSDLSQRMICSTQ-L 453 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSC----------------SSEEEEEEETTTTE-----------EEEEETTTTEEEEEE-C
T ss_pred cccceeEeeccCCcceeeecCC----------------CceEEEeecccCCe-----------eEEeeccceeEEEEe-c
Confidence 3456777777765543332211 12226777775442 344555566777666 2
Q ss_pred cccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc
Q 011257 214 TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 291 (490)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 291 (490)
.+.... . ...............|++.+.+..|+.+ ..+.|.+.++... ....++ .........|++.
T Consensus 454 ~g~~~~--~-~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~-------~~~l~~P~gIaVD 522 (791)
T 3m0c_C 454 DRAHGV--S-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLF-------RENGSKPRAIVVD 522 (791)
T ss_dssp -----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEE-------ECTTCCEEEEEEE
T ss_pred cCCCCC--c-ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEEEEE-------eCCCCCcceEEEe
Confidence 211100 0 0111112223456789999887666665 5889999998733 222221 1223457899999
Q ss_pred CCCCcEEEEEeCC-CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEe
Q 011257 292 PTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWD 368 (490)
Q Consensus 292 p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd 368 (490)
|.+..++.+-... +.|...++..... ..+.... ......|++++.+..|+.++ .+.|...+
T Consensus 523 p~~g~LYwtD~g~~~~I~~~~~dG~~~-----~~lv~~~-----------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 523 PVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCCE-----EEEECSS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEecCCCCCeEEEEecCCCce-----EEEEeCC-----------CCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 9752455544333 7888888875432 2221111 13578899998777777663 37899999
Q ss_pred ccCCCCceeeeeee-ccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCC-CceEE
Q 011257 369 INMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRR 446 (490)
Q Consensus 369 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~-~~v~~ 446 (490)
++ +.....+... ..... -..|++.. +.++++-...+.|...+..+|+.+ ..+.... .+.--
T Consensus 587 ~d--G~~~~~v~~~~~~l~~-------------P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~-~~l~~~l~~P~~i 649 (791)
T 3m0c_C 587 VN--GGNRKTILEDEKRLAH-------------PFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV-NLLAENLLSPEDM 649 (791)
T ss_dssp TT--SCSCEEEEECTTTTSS-------------EEEEEEET-TEEEEEETTTTEEEEEETTTCCCC-EEEECSCSCCCCE
T ss_pred cC--CCceEEEecCCCccCC-------------CCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce-EEeecCCCCceeE
Confidence 86 4444433321 11110 12566532 234444445688988888888663 4443322 33333
Q ss_pred EEEccCCC
Q 011257 447 QVQTPSRP 454 (490)
Q Consensus 447 ~~~sp~~~ 454 (490)
..++|..+
T Consensus 650 ~v~h~~~Q 657 (791)
T 3m0c_C 650 VLFHNLTQ 657 (791)
T ss_dssp EEESGGGS
T ss_pred eeeccccC
Confidence 44666543
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.90 E-value=0.016 Score=54.52 Aligned_cols=173 Identities=8% Similarity=-0.037 Sum_probs=89.7
Q ss_pred ccCceEEec-cCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe
Q 011257 173 SAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (490)
Q Consensus 173 ~~~~~~~s~-~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 251 (490)
.|..+++.| +|. +.++...++.|..++ .. ...... ..+..+.......++|+|+++.|..+
T Consensus 229 ~P~giavd~~~G~------------lyv~d~~~~~V~~~d-~~---~g~~~~--~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 229 GAKTCAVHPQNGK------------IYYTRYHHAMISSYD-PA---TGTLTE--EEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp SBCCCEECTTTCC------------EEECBTTCSEEEEEC-TT---TCCEEE--EEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred CCCEEEEeCCCCe------------EEEEECCCCEEEEEE-CC---CCeEEE--EEeccCCCCCcccEEEeCCCCEEEEE
Confidence 344678888 555 445555667777776 11 110000 01111111223469999999966665
Q ss_pred --cCCcEEEEEcCCCCcee---eeeecCC--Ccc------CCCCCceEEEEE---------cCCCCcEEEEEeCCCeEEE
Q 011257 252 --DDLRINLWNLEISNQSF---NIVDVKP--ANM------EDLTEVITSAEF---------HPTHCNMLAYSSSKGSIRL 309 (490)
Q Consensus 252 --~d~~i~~wd~~~~~~~~---~~~~~~~--~~~------~~~~~~v~~~~~---------~p~~~~~l~~~~~dg~i~i 309 (490)
..+.|+.++.......+ ..+.... ..+ ...-.....+++ .+++ .++++-...+.|+.
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRV 369 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEE
Confidence 57889998876322111 1110000 000 011234678999 6777 77777777889999
Q ss_pred EeCCCccccccccceeccccC---CCcc---ccccccccceEEEEEC-CCCCEEEEEc-CCeEEEEecc
Q 011257 310 IDMRQSALCDTHSKLFEEQEA---PGTR---SFFTEIIASISDIKFA-RNGRHILSRD-YMTLKLWDIN 370 (490)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~h~~~i~~l~~s-p~g~~l~sg~-d~~i~iwd~~ 370 (490)
++. .+.. .++.+... .... ......-.....|+++ ++|.++++=. .+.|+.++++
T Consensus 370 ~~~-~G~v-----~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGRV-----TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSEE-----EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCCE-----EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 985 4432 23332211 0000 0000011346789999 5666555533 3788888764
No 276
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.90 E-value=0.0018 Score=58.52 Aligned_cols=186 Identities=10% Similarity=0.023 Sum_probs=105.7
Q ss_pred ceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCC-------------ccCCCCCceEEEEEcC-CCCcEEE
Q 011257 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-------------NMEDLTEVITSAEFHP-THCNMLA 299 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~p-~~~~~l~ 299 (490)
...+++++++++++.++ .++.|..|+..... ... +..... ........+..+++.+ ++ ++ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l-~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QL-Y 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEE-EecccccccccccccccchhccccCCCCceEEEcCCCC-cE-E
Confidence 45678899999877777 78999999876332 211 110000 0000123578999998 66 44 4
Q ss_pred EEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC-CCCEEEEEc------------------
Q 011257 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD------------------ 360 (490)
Q Consensus 300 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~g~~l~sg~------------------ 360 (490)
.+...+.|..+|..++.. ..+...... ........+++.+ +|++.++-.
T Consensus 96 v~d~~~~i~~~d~~~g~~-----~~~~~~~~~-------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-----TQLATSVDG-------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEETTTEEEEECTTCEEC-----EEEESEETT-------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred EEECCCCEEEEeCCCCEE-----EEecccCCC-------CcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence 454455588888776532 122111000 0012467899999 998777642
Q ss_pred CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-ecCCeEEEEecCCCce-eeeEec
Q 011257 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTLE 438 (490)
Q Consensus 361 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~-~~dg~i~vw~~~~~~~-~~~~~~ 438 (490)
.+.|..||..+ ++ +..+...... -..++|+|++++|..+ +..+.|.+|++..... ....+.
T Consensus 164 ~g~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~ 226 (322)
T 2fp8_A 164 TGRLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV 226 (322)
T ss_dssp CEEEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE
T ss_pred CceEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE
Confidence 26688888764 33 2222111111 1278999999866555 5568999999885321 011111
Q ss_pred cCCCceEEEEEccCCC
Q 011257 439 ASKNPMRRQVQTPSRP 454 (490)
Q Consensus 439 ~~~~~v~~~~~sp~~~ 454 (490)
.... ...+++.++|.
T Consensus 227 ~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 227 KIPN-PGNIKRNADGH 241 (322)
T ss_dssp ECSS-EEEEEECTTSC
T ss_pred eCCC-CCCeEECCCCC
Confidence 1122 66677777775
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.0061 Score=57.36 Aligned_cols=253 Identities=10% Similarity=0.069 Sum_probs=127.8
Q ss_pred cEEEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccce
Q 011257 37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (490)
Q Consensus 37 ~V~~~~~s~-dg~~latg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~V 115 (490)
....|+++| ++..|+.+...+.|+.+|..++. +..+.... ...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~------------------------v~~~~~~~------------~~P 181 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY------------------------VSTVYSGL------------SKV 181 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE------------------------EEEEECCC------------SCE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE------------------------EEEEecCC------------CCc
Confidence 457889998 45566666555788888876543 11121111 447
Q ss_pred eEEEEeecCCCcEEEEEeC-cC----eEEEEEccCCeE--EEEeeeccCCCcCCCCCCccccccccCceEEec-cCCccc
Q 011257 116 NKIRWCQSANSALYLLSTN-DK----TIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCGE 187 (490)
Q Consensus 116 ~~v~~~p~~~~~~l~~~~~-dg----~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~ 187 (490)
..|+|.+ +++.|+++.. ++ .+...+...... ..+.. ...|..++++| +|.
T Consensus 182 ~~ia~d~--~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~-----------------~~~p~giavdp~~g~--- 239 (430)
T 3tc9_A 182 RTICWTH--EADSMIITNDQNNNDRPNNYILTRESGFKVITELTK-----------------GQNCNGAETHPINGE--- 239 (430)
T ss_dssp EEEEECT--TSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEE-----------------CSSCCCEEECTTTCC---
T ss_pred ceEEEeC--CCCEEEEEeCCCCcccceEEEEeCCCceeeeeeecc-----------------CCCceEEEEeCCCCE---
Confidence 7899985 5665555543 22 233344332211 11111 12334788888 555
Q ss_pred cccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCC
Q 011257 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (490)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~ 265 (490)
++++-..++.|..++ .... ... .....+.......++|+|++++|+.+ ..+.|..++.....
T Consensus 240 ---------lyv~d~~~~~V~~~~-~~~~---~~~---~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~ 303 (430)
T 3tc9_A 240 ---------LYFNSWNAGQVFRYD-FTTQ---ETT---PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKT 303 (430)
T ss_dssp ---------EEEEETTTTEEEEEE-TTTT---EEE---EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ---------EEEEECCCCEEEEEE-CCCC---cEE---EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccc
Confidence 455555667788777 2111 100 11111112346789999999966555 68899998876321
Q ss_pred cee---eeeecCC--Ccc------CCCCCceE-EEEEc--------CCCCcEEEEEeCCCeEEEEeCCCcccccccccee
Q 011257 266 QSF---NIVDVKP--ANM------EDLTEVIT-SAEFH--------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (490)
Q Consensus 266 ~~~---~~~~~~~--~~~------~~~~~~v~-~~~~~--------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 325 (490)
..+ ..+.... ..+ ...-.... .++.. +++ .++++=...+.|+.++. .+.. .++
T Consensus 304 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~-~G~v-----~~~ 376 (430)
T 3tc9_A 304 KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTP-QGRV-----TTF 376 (430)
T ss_dssp TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECT-TSEE-----EEE
T ss_pred ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECC-CCcE-----EEE
Confidence 111 1111000 000 00112233 45553 345 56666566788988883 4432 222
Q ss_pred ccccCCCccc------cccccccceEEEEECCC-CCEEEEEc-CCeEEEEecc
Q 011257 326 EEQEAPGTRS------FFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDIN 370 (490)
Q Consensus 326 ~~~~~~~~~~------~~~~h~~~i~~l~~sp~-g~~l~sg~-d~~i~iwd~~ 370 (490)
.+........ .....-.....|+++|+ +.++++-. .+.|+.++++
T Consensus 377 ~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 377 AGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2210000000 00001135688999995 55444433 3788888764
No 278
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.86 E-value=0.0044 Score=60.69 Aligned_cols=62 Identities=18% Similarity=0.034 Sum_probs=38.2
Q ss_pred CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeee
Q 011257 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
+|.|..||..+++...+ +... ..+....+...+..++.+ .|+.|+.+|.++ ++.+..+...
T Consensus 443 ~g~l~a~D~~tG~~~W~----~~~~-------------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~t-G~~lw~~~~~ 504 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWT----KWEK-------------FAAWGGTLYTKGGLVWYATLDGYLKALDNKD-GKELWNFKMP 504 (571)
T ss_dssp CEEEEEECTTTCCEEEE----EEES-------------SCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred CCeEEEEECCCCCEEEE----ecCC-------------CCccceeEEECCCEEEEEcCCCeEEEEECCC-CCEEEEEeCC
Confidence 47888899888875432 2111 111122222234556656 469999999997 8888877654
Q ss_pred c
Q 011257 383 E 383 (490)
Q Consensus 383 ~ 383 (490)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 4
No 279
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.0006 Score=68.56 Aligned_cols=245 Identities=8% Similarity=-0.030 Sum_probs=125.3
Q ss_pred cCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcEEEeeeec
Q 011257 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVT 214 (490)
Q Consensus 135 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~ 214 (490)
.+.|+..++.+.....+... ...+..++|.+.+.. ++++-...+.|..++ +.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~----------------~~~p~gla~d~~~~~-----------Ly~sD~~~~~I~~~~-~~ 436 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN----------------LRNVVALDTEVASNR-----------IYWSDLSQRMICSTQ-LD 436 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC----------------CTTCCCCEEETTTTE-----------EEECCTTTTSBEEEE-SC
T ss_pred ccceEEEeCCCCcceeeecc----------------CcceEEEccccccCe-----------EEEEecCCCeEEEEe-cC
Confidence 35677777776554332211 122337788876652 344445567787776 22
Q ss_pred ccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC
Q 011257 215 SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 292 (490)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 292 (490)
.... .................|++.+.+..|+.+ ..+.|.++++... ....++ .........++++|
T Consensus 437 g~~~---~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~-~~~~l~-------~~~~~~P~giavDp 505 (699)
T 1n7d_A 437 RAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLF-------REQGSKPRAIVVDP 505 (699)
T ss_dssp CCCC----CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC-CEEEEC-------CCSSCCCCCEECCS
T ss_pred CCCC---CcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC-ceEEEE-------eCCCCCcceEEEcc
Confidence 1000 000001111111234568888655555544 5788999998733 222221 11223457889999
Q ss_pred CCCcEEEEEeCC-CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEec
Q 011257 293 THCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDI 369 (490)
Q Consensus 293 ~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~ 369 (490)
.+..++++-... +.|..+++..... ..+.... ......|+|+|++..|+.++ .+.|..+++
T Consensus 506 ~~g~ly~td~~~~~~I~~~~~dG~~~-----~~l~~~~-----------l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 506 VHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVTEN-----------IQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp SSSCCEECCCSSSCCEEBCCSSSCCC-----CEESCSS-----------CSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred CCCcEEEcccCCCCeEEEEeCCCCCe-----eEEEeCC-----------CCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 763444443333 6777777654321 1111110 03457899999876666553 389999998
Q ss_pred cCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEE
Q 011257 370 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 449 (490)
. +.....+........ . -..+++..+ .++++....+.|..++..+|+. +..+.........+++
T Consensus 570 d--G~~~~~~~~~~~~~~---------~---P~glavd~~-~lywtd~~~~~V~~~d~~~G~~-~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 570 N--GGNRKTILEDEKRLA---------H---PFSLAVFED-KVFWTDIINEAIFSANRLTGSD-VNLLAENLLSPEDMVL 633 (699)
T ss_dssp S--SSCCEEECCCSSSCS---------S---CCCCEEETT-EEEEECSTTTCEEEEETTTEEE-EECCCTTCSSCCCCCB
T ss_pred C--CCceEEEEecCCcCC---------C---ceEeEEECC-EEEEEeCCCCeEEEEEccCCCc-eEEeecCCCCCcEEEE
Confidence 7 332333221110000 0 125666544 4555556678999999888866 3455433333444543
Q ss_pred c
Q 011257 450 T 450 (490)
Q Consensus 450 s 450 (490)
.
T Consensus 634 ~ 634 (699)
T 1n7d_A 634 F 634 (699)
T ss_dssp C
T ss_pred e
Confidence 3
No 280
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.75 E-value=0.014 Score=52.92 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=105.6
Q ss_pred ceeEEEecCCCCEEEEe-------------cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC--CCC-cEE
Q 011257 235 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NML 298 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~-------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~-~~l 298 (490)
...+++..|+|..++++ .+|.|.++|..+.......+.+....+.........+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44567778888776665 58889999987433222222111100222344667787766 342 345
Q ss_pred EEEeC--CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc----C-----------
Q 011257 299 AYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y----------- 361 (490)
Q Consensus 299 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~----d----------- 361 (490)
++-.. +.+|.+|++.........+..+.+... ...+.+.+.++|++.++.. |
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~-----------~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLL-----------PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTC-----------SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCC-----------CCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 55444 567888887654333223344443221 4678999999999888753 1
Q ss_pred -CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCC-Ccee-eeEe
Q 011257 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSE-GSAE-STTL 437 (490)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~-~~~~-~~~~ 437 (490)
..=++|.++. ++ +..+...-... ..++||||++.|..+. ..+.|+.|++.. |+.. ...+
T Consensus 200 ~~~g~vyr~d~-~~-~~~~~~~l~~p---------------NGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 200 LAWSFVTYYSP-ND-VRVVAEGFDFA---------------NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp CCCEEEEEECT-TC-CEEEEEEESSE---------------EEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEEEC-Ce-EEEeecCCccc---------------CcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 1223444442 32 22221111111 3799999998776655 578999999863 3321 1222
Q ss_pred ccCCCceEEEEEcc-CCCC
Q 011257 438 EASKNPMRRQVQTP-SRPS 455 (490)
Q Consensus 438 ~~~~~~v~~~~~sp-~~~~ 455 (490)
......-.++..+ +|..
T Consensus 263 -~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 263 -SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp -ECSSEEEEEEECTTTCCE
T ss_pred -eCCCCCceEEEeCCCCcE
Confidence 1234455566666 3553
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.69 E-value=0.017 Score=53.54 Aligned_cols=175 Identities=11% Similarity=-0.028 Sum_probs=103.6
Q ss_pred cceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
..+..++|++.+..|+.. ..+.|..+++.... ...++ .........+++.+.+..++++-...+.|.+.+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 456789999876666655 68889999987443 22221 111234567888876536666666778899888
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--C-CeEEEEeccCCCCceeeeeeecccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPK 388 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (490)
+..... ..+.... ......++++|.+.+|+..+ . +.|..++++ +.....+.......
T Consensus 188 ~dg~~~-----~~l~~~~-----------l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~-- 247 (386)
T 3v65_B 188 LDGAHR-----KVLLWQS-----------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW-- 247 (386)
T ss_dssp TTSCSC-----EEEECSS-----------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSC--
T ss_pred CCCCce-----EEeecCC-----------CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC--
Confidence 765421 1111111 13468899999777666543 3 678888876 44333332111100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEE
Q 011257 389 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 449 (490)
-..++|+|++..|..+. ..+.|..+++..... ...+.........+++
T Consensus 248 ------------PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav 296 (386)
T 3v65_B 248 ------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV 296 (386)
T ss_dssp ------------EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE
T ss_pred ------------eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE
Confidence 13799998766655544 567899999875433 2233323334555665
No 282
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.61 E-value=0.034 Score=49.78 Aligned_cols=209 Identities=9% Similarity=-0.001 Sum_probs=113.6
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCC----eEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK----KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..+..++|.+. ++..+++-...+.|..+++.+. ....+.... ...|..+++.+.+..
T Consensus 30 ~~p~g~~~d~~-~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~---------------~~~p~glavd~~~~~--- 90 (316)
T 1ijq_A 30 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------IQAPDGLAVDWIHSN--- 90 (316)
T ss_dssp SSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSS---------------CSCCCEEEEETTTTE---
T ss_pred CceEEEEEEeC-CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC---------------CCCcCEEEEeecCCe---
Confidence 34678999862 3345555566789999998762 212211100 122336777765442
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cC-CcEEEEEcCCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD-LRINLWNLEISN 265 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-~~i~~wd~~~~~ 265 (490)
+.++-...+.|.+.+ ..+. ....+..........++++|.+..|+.+ .. +.|...++....
T Consensus 91 --------ly~~d~~~~~I~~~~-~~g~-------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~ 154 (316)
T 1ijq_A 91 --------IYWTDSVLGTVSVAD-TKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 154 (316)
T ss_dssp --------EEEEETTTTEEEEEE-TTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred --------EEEEECCCCEEEEEe-CCCC-------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence 344555667788776 2211 1111112222456889999976665554 33 788888876332
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
...+. ...-.....++++|++.+++++-...+.|..+|+..... +.+..... ......
T Consensus 155 -~~~~~-------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-----~~~~~~~~---------~~~~P~ 212 (316)
T 1ijq_A 155 -IYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK---------RLAHPF 212 (316)
T ss_dssp -EEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECTT---------TTSSEE
T ss_pred -eEEEE-------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-----EEEeecCC---------ccCCcE
Confidence 21111 112356789999987735555656678999999875321 22211100 002345
Q ss_pred EEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeee
Q 011257 346 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 346 ~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~ 380 (490)
.+++. .+..+++- ..+.|..++..+ ++.+..+.
T Consensus 213 giav~-~~~ly~~d~~~~~V~~~~~~~-g~~~~~i~ 246 (316)
T 1ijq_A 213 SLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 246 (316)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTT-CCCCEEEE
T ss_pred EEEEE-CCEEEEEECCCCeEEEEeCCC-CcceEEEe
Confidence 67774 34444443 348999998765 55555543
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.61 E-value=0.035 Score=49.75 Aligned_cols=219 Identities=10% Similarity=0.014 Sum_probs=120.9
Q ss_pred ceEEeccCCccccccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cC
Q 011257 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (490)
Q Consensus 176 ~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d 253 (490)
.++|.+.+.. +.++-...+.|..++ ...... .. ......-.....+++.+.+..|+.. ..
T Consensus 39 ~ld~d~~~~~-----------lyw~D~~~~~I~r~~-~~g~~~---~~---~~~~~~l~~p~glavd~~~g~ly~~d~~~ 100 (318)
T 3sov_A 39 AVDFVFSHGL-----------IYWSDVSEEAIKRTE-FNKTES---VQ---NVVVSGLLSPDGLACDWLGEKLYWTDSET 100 (318)
T ss_dssp EEEEEGGGTE-----------EEEEETTTTEEEEEE-TTSSSC---CC---EEEEECCSCCCEEEEETTTTEEEEEETTT
T ss_pred EEEEEeCCCE-----------EEEEECCCCcEEEEE-ccCCCc---eE---EEEcCCCCCccEEEEEcCCCeEEEEECCC
Confidence 6778875542 444555667777766 221110 00 0011111345678898765555554 57
Q ss_pred CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCccccccccceeccccCCC
Q 011257 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (490)
Q Consensus 254 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 332 (490)
+.|.++++...... .+ ..........+++.|.+..++.+-. ..+.|...++..... ..+....
T Consensus 101 ~~I~~~~~dG~~~~-~l-------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~~~~--- 164 (318)
T 3sov_A 101 NRIEVSNLDGSLRK-VL-------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-----FIIINSE--- 164 (318)
T ss_dssp TEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-----EEEECSS---
T ss_pred CEEEEEECCCCcEE-EE-------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-----EEEEECC---
Confidence 88999998743222 11 1223455789999997524444432 357888888764321 1221111
Q ss_pred ccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCC
Q 011257 333 TRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (490)
Q Consensus 333 ~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 410 (490)
......|+++|++..|..++ .+.|..+|++ +.....+....... -..+++. .+
T Consensus 165 --------l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~--------------P~glav~-~~ 219 (318)
T 3sov_A 165 --------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH--------------PFALTLF-ED 219 (318)
T ss_dssp --------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSC--------------EEEEEEE-TT
T ss_pred --------CCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCC--------------ceEEEEe-CC
Confidence 13468899999877777663 3899999987 33333332111000 1266665 33
Q ss_pred CEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEE-EEccCCC
Q 011257 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRP 454 (490)
Q Consensus 411 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~ 454 (490)
.++.+-...+.|..++..+|+. ...+........++ .++|..+
T Consensus 220 ~lywtd~~~~~V~~~~~~~G~~-~~~i~~~~~~P~~i~v~~~~~q 263 (318)
T 3sov_A 220 ILYWTDWSTHSILACNKYTGEG-LREIHSDIFSPMDIHAFSQQRQ 263 (318)
T ss_dssp EEEEEETTTTEEEEEETTTCCS-CEEEECCCSSCCCEEEECGGGS
T ss_pred EEEEEecCCCeEEEEECCCCCc-eEEEeCCCCCCcEEEEeccccc
Confidence 4555555678999999988876 34444332233333 4566543
No 284
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.59 E-value=0.042 Score=50.02 Aligned_cols=175 Identities=11% Similarity=-0.029 Sum_probs=104.0
Q ss_pred cceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
..+..++|++....|... ..+.|..+++..... ..++ .........+++.+.+.+++.+-...+.|.+.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 346789999876666655 688899999874432 2221 112234568899986536667767788999999
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--C-CeEEEEeccCCCCceeeeeeecccccc
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPK 388 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (490)
+..... ..+.... ......++++|.+..|+..+ . +.|...+++ +.....+.......
T Consensus 145 ~dG~~~-----~~l~~~~-----------l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~-- 204 (349)
T 3v64_C 145 LDGAHR-----KVLLWQS-----------LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW-- 204 (349)
T ss_dssp TTSCSC-----EEEECTT-----------CSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCSC--
T ss_pred CCCCce-----EEEEeCC-----------CCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC--
Confidence 875421 1211111 13468899999766666543 3 678888876 43333332111100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEee-cCCeEEEEecCCCceeeeEeccCCCceEEEEE
Q 011257 389 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 449 (490)
-..++++|++..|..+. ..+.|..+++..... ...+.........+++
T Consensus 205 ------------PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav 253 (349)
T 3v64_C 205 ------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV 253 (349)
T ss_dssp ------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE
T ss_pred ------------cceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE
Confidence 13799998777665544 567899999875433 2223322334455655
No 285
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.57 E-value=0.075 Score=52.48 Aligned_cols=204 Identities=13% Similarity=0.036 Sum_probs=110.4
Q ss_pred ccccEEEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeec
Q 011257 34 EVDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (490)
Q Consensus 34 h~~~V~~~~~s~dg~~latg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~ 112 (490)
....+..++|++.+..|+.+. ..+.|..++++..... ...+....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------ 83 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------ 83 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------
Confidence 345678999998766666554 4567888887643210 01111111
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.....+++.+. .+.++++-...+.|.+.++++.....+.... ...|..+++.|.+..
T Consensus 84 ~~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~---------------l~~P~~Iavdp~~g~------- 140 (619)
T 3s94_A 84 LSPDGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------------LDQPRAIALDPSSGF------- 140 (619)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSS---------------CSCCCCEEEETTTTE-------
T ss_pred CCcCeEEEEec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCC---------------CCCCceEEEecCCCe-------
Confidence 33677888652 3445555667789999999876544433211 133558888887552
Q ss_pred CCCCccccC-CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceee
Q 011257 193 ASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (490)
Q Consensus 193 ~~~~~l~~~-~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~ 269 (490)
+.++- +..+.|...+ .+... ...+....-.....++++++++.|..+ ..+.|...++... ....
T Consensus 141 ----ly~tD~g~~~~I~r~~----~dG~~----~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~ 207 (619)
T 3s94_A 141 ----MYWTDWGEVPKIERAG----MDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQA 207 (619)
T ss_dssp ----EEEEECSSSCEEEEEE----TTSCS----CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC-
T ss_pred ----EEEeccCCCCEEEEEE----CCCCc----eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEE
Confidence 22222 2234444433 11111 111111122456789999987777776 5778888888732 2222
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCcc
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 316 (490)
+. .+.......+++..+ .++.+-..++.|...|..+++
T Consensus 208 ~~-------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 208 VV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred EE-------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence 11 111122345666554 466666667889999987765
No 286
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.52 E-value=0.14 Score=54.38 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=27.9
Q ss_pred cccEEEEEECCC------CCEEEEecC-CCcEEEEEecCCC
Q 011257 35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDTR 68 (490)
Q Consensus 35 ~~~V~~~~~s~d------g~~latg~~-dg~v~iwd~~~~~ 68 (490)
...|+|+++.|. ++++|.|.. |++|+|+++.+.+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 567999999873 369999996 9999999997533
No 287
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.50 E-value=0.074 Score=52.13 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCceeeeeee
Q 011257 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (490)
Q Consensus 304 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~ 382 (490)
+|.|.-||+.+++...+ .... .++..-.....+.+++.| .|+.++.||.++ ++.+-.++..
T Consensus 465 ~G~l~A~D~~tG~~~W~----~~~~-------------~~~~~g~~~tagglvf~g~~dg~l~A~D~~t-G~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWE----HKEH-------------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKS-GKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEEEE----EEES-------------SCCCSCCEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cceEEEEECCCCCEEEE----ecCC-------------CCCcccceEeCCCEEEEECCCCcEEEEECCC-CCEEEEecCC
Confidence 57899999998876432 1111 011111111235566666 469999999998 9988888765
Q ss_pred cc
Q 011257 383 EH 384 (490)
Q Consensus 383 ~~ 384 (490)
..
T Consensus 527 ~g 528 (582)
T 1flg_A 527 SG 528 (582)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.49 E-value=0.052 Score=48.86 Aligned_cols=159 Identities=9% Similarity=0.065 Sum_probs=89.4
Q ss_pred cccceeEEEecCCCCEEEEecCCcEEE-EEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEE
Q 011257 232 HDYHINSISNNSDGETFISADDLRINL-WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iw 310 (490)
....+..+++.+++.+++.+.++.+.. .|- .+...+.+. ......+..+.+.+++ .++ .++.+|.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFS 230 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEE-EEETTTEEEEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEE-EEeCCceEEEe
Confidence 345678899999999888885555443 332 122222221 1235578889999987 555 45567888776
Q ss_pred eCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeecccccccc
Q 011257 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (490)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (490)
+...++ ++.....+. + .....+.++.+.+++..++++.++.| ++..+. ++.-..+.......
T Consensus 231 ~~D~G~-------tW~~~~~~~----~-~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~Dg-G~tW~~~~~~~~~~---- 292 (327)
T 2xbg_A 231 DPDNSE-------NWGELLSPL----R-RNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDG-GQTWQQDVDVKKVP---- 292 (327)
T ss_dssp ETTEEE-------EECCCBCTT----S-SCCSCEEEEEESSSSCEEEEESTTCE-EEESST-TSSCEECGGGTTSS----
T ss_pred cCCCCC-------eeEeccCCc----c-cCCcceEEEEecCCCEEEEEeCCCeE-EEeCCC-CcccEEcCccCCCC----
Confidence 433232 111111000 0 00135788999998998888888776 444442 44433332111000
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEec
Q 011257 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~ 427 (490)
.. +.++.|.+++. ++.++.+|.|.-++-
T Consensus 293 -----~~---~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 293 -----SN---FYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp -----SC---CCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred -----CC---eEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 01 23788875555 555667887776653
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.47 E-value=0.054 Score=48.51 Aligned_cols=206 Identities=7% Similarity=0.010 Sum_probs=115.2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEE-EEeeeccCCCcCCCCCCccccccccCceEEeccCCcccccccc
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~ 192 (490)
.+..+.|.+. ++.++.+-...+.|..+++.+.... .+.... ...|..+++.+.+..
T Consensus 36 ~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---------------l~~p~glavd~~~g~------- 92 (318)
T 3sov_A 36 DAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---------------LLSPDGLACDWLGEK------- 92 (318)
T ss_dssp EEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSSCCCEEEEEC---------------CSCCCEEEEETTTTE-------
T ss_pred ccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCCceEEEEcCC---------------CCCccEEEEEcCCCe-------
Confidence 3668889863 3445555566788988988765321 111111 112336777765442
Q ss_pred CCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--c-CCcEEEEEcCCCCceee
Q 011257 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFN 269 (490)
Q Consensus 193 ~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~~wd~~~~~~~~~ 269 (490)
+.++-...+.|.+++ ..+.. ...+..........+++.|.+..|+.+ . .+.|...++.... ...
T Consensus 93 ----ly~~d~~~~~I~~~~-~dG~~-------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~ 159 (318)
T 3sov_A 93 ----LYWTDSETNRIEVSN-LDGSL-------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFI 159 (318)
T ss_dssp ----EEEEETTTTEEEEEE-TTSCS-------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred ----EEEEECCCCEEEEEE-CCCCc-------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEE
Confidence 445555667777776 22111 111112223456789999876666555 2 5778888876322 222
Q ss_pred eeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE
Q 011257 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~ 349 (490)
++ ...-.....++++|++.+++.+=+..+.|..+|+..... +.+.... ......+++
T Consensus 160 ~~-------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~-----------~~~P~glav 216 (318)
T 3sov_A 160 II-------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVKGS-----------LPHPFALTL 216 (318)
T ss_dssp EE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSC-----------CSCEEEEEE
T ss_pred EE-------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----EEEecCC-----------CCCceEEEE
Confidence 11 122345689999997635555556678999999875321 2221111 023466777
Q ss_pred CCCCCEEEEE-cCCeEEEEeccCCCCceeeee
Q 011257 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 350 sp~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~ 380 (490)
..+ ..+.+- ..+.|..++..+ ++....+.
T Consensus 217 ~~~-~lywtd~~~~~V~~~~~~~-G~~~~~i~ 246 (318)
T 3sov_A 217 FED-ILYWTDWSTHSILACNKYT-GEGLREIH 246 (318)
T ss_dssp ETT-EEEEEETTTTEEEEEETTT-CCSCEEEE
T ss_pred eCC-EEEEEecCCCeEEEEECCC-CCceEEEe
Confidence 533 333333 348999999875 66555554
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.43 E-value=0.048 Score=53.46 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=23.9
Q ss_pred CCCEEEEE-cCCeEEEEeccCCCCceeeeeeecc
Q 011257 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEH 384 (490)
Q Consensus 352 ~g~~l~sg-~d~~i~iwd~~~~~~~~~~~~~~~~ 384 (490)
.+..++.+ .|+.++.||.++ ++.+-.++....
T Consensus 483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g 515 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG 515 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence 45566666 469999999998 888887765443
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.39 E-value=0.026 Score=50.02 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=101.7
Q ss_pred cceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCcc-CCCCCceEEEEE---cCCCCcEEEEEeC----
Q 011257 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM-EDLTEVITSAEF---HPTHCNMLAYSSS---- 303 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~---~p~~~~~l~~~~~---- 303 (490)
....+++|++....|..+ ..+.|..|+... +....+ .+..... ......+..+.+ .|++ +++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 334578898855555554 699999999873 322222 1110000 011224579999 6887 78776442
Q ss_pred ---------CCeEEEEeCC---CccccccccceeccccCCCccccccc-cccceEEEEECCCCCEEEEEc-C-CeEEEEe
Q 011257 304 ---------KGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRD-Y-MTLKLWD 368 (490)
Q Consensus 304 ---------dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~l~~sp~g~~l~sg~-d-~~i~iwd 368 (490)
+..+..||+. +++.... ..+...... .....+ -......++..++|+..++++ . +.|...+
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~--~dL~~~~~~--~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWS--VNFEKVQDE--FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEE--EESHHHHHH--HHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEE--ecCcccccc--ccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 6789999999 6654311 111110000 000000 013478999999999988864 3 5655555
Q ss_pred ccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCC
Q 011257 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
.+ ++.+..+....... ........++++|+|+.|++....|.|..+|+..
T Consensus 166 pd--G~~~~~~~~~~~~~---------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 AD--GKTVSTFAWESGNG---------GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TT--SCCEEEEEECCCCS---------SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC--CCEEeeeeecCCCc---------ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 54 55444332221110 0011124899999999888877799999999874
No 292
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.34 E-value=0.083 Score=47.79 Aligned_cols=187 Identities=7% Similarity=0.093 Sum_probs=101.1
Q ss_pred cceeEEEecC--CCC-EEEEe--c--CCcEEEEEcCCCCceeeeeecCCCccCC-CCCceEEEEEcCCCCcEEEEEeC--
Q 011257 234 YHINSISNNS--DGE-TFISA--D--DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSS-- 303 (490)
Q Consensus 234 ~~v~~i~~~~--~~~-~l~~~--~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~-- 303 (490)
.....+.+.+ ++. +|+.+ . +..|.+|++.........+. ++.+ .-...+.+++.++| .++++...
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~f 186 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYF 186 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSC
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEe
Confidence 3556666655 454 34443 2 67888988875444333321 1111 23467899999999 77666541
Q ss_pred ---------------CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEE
Q 011257 304 ---------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKL 366 (490)
Q Consensus 304 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~i 366 (490)
.|.|..+|. ++ +..+... ....+.++|+||++.|+.++ .+.|..
T Consensus 187 td~~~~~~e~~~~~~~g~vyr~d~--~~-----~~~~~~~------------l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 187 IDPYLKSWEMHLGLAWSFVTYYSP--ND-----VRVVAEG------------FDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp SSHHHHHHHHHTTCCCEEEEEECT--TC-----CEEEEEE------------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CCcccccchhhccCCccEEEEEEC--Ce-----EEEeecC------------CcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 234444443 22 1111111 13468899999999888764 389999
Q ss_pred EeccCCCCceeeeeeec-cccccccccccCCCccceeeEEEcC-CCCEEEEeecC-CeEEEEecC--CCceeeeEec--c
Q 011257 367 WDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYS-NLFRVFGCS--EGSAESTTLE--A 439 (490)
Q Consensus 367 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~d-g~i~vw~~~--~~~~~~~~~~--~ 439 (490)
|+++.++. +...+.-. ... .-.+++.+ +|++.+++..+ +.|..|+.. .+..+.+.-. .
T Consensus 248 ~~~~~~g~-l~~~~~~~~~g~--------------PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~ 312 (355)
T 3sre_A 248 YEKHANWT-LTPLRVLSFDTL--------------VDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILS 312 (355)
T ss_dssp EEECTTSC-EEEEEEEECSSE--------------EEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTS
T ss_pred EEECCCCc-EecCEEEeCCCC--------------CceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCC
Confidence 99974233 22111110 000 12688999 59988866644 345555544 2333222221 1
Q ss_pred CCCceEEEEEccCCCCCCCCc
Q 011257 440 SKNPMRRQVQTPSRPSRPLGS 460 (490)
Q Consensus 440 ~~~~v~~~~~sp~~~~~~~~~ 460 (490)
-...+.. .|.-||.....++
T Consensus 313 ~~~~v~~-v~~ddG~~l~~~T 332 (355)
T 3sre_A 313 EEPKVTV-VYAENGTVLQGST 332 (355)
T ss_dssp SSCEEEE-EEEECSSSCCSEE
T ss_pred CCcEEEE-EEEcCCCEEEeeE
Confidence 2233444 4666887655443
No 293
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.27 E-value=0.12 Score=48.04 Aligned_cols=209 Identities=9% Similarity=-0.003 Sum_probs=111.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCe----EEEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..+..|+|.+. ++.++++-...+.|+.+++.+.. ...+.... ...|..+++.+.+..
T Consensus 112 ~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---------------~~~p~glavD~~~~~--- 172 (400)
T 3p5b_L 112 RNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------------IQAPDGLAVDWIHSN--- 172 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSS---------------CSCEEEEEEETTTTE---
T ss_pred CcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---------------CCCcccEEEEecCCc---
Confidence 45788999862 34445555567888888887522 12211111 122336677764442
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--c-CCcEEEEEcCCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN 265 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~~wd~~~~~ 265 (490)
+.++-...+.|.+.+ . +... ...+....-.....|+++|.+..|+.. . .+.|...++....
T Consensus 173 --------lY~~d~~~~~I~~~~-~---~g~~----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 173 --------IYWTDSVLGTVSVAD-T---KGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp --------EEEEETTTTEEEEEC-T---TTCS----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred --------eEEEECCCCeEEEEe-C---CCCc----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 445555667777766 1 1111 111112222456889999976666655 2 4788888887333
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
. ..++ .........++++|++.+++.+=...+.|..+|+..... +.+..... ......
T Consensus 237 ~-~~~~-------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~~~~~~~~---------~l~~P~ 294 (400)
T 3p5b_L 237 I-YSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK---------RLAHPF 294 (400)
T ss_dssp C-EEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-----EEEEECSS---------TTSSEE
T ss_pred c-EEEE-------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-----EEEEeCCC---------CCCCCE
Confidence 2 2221 222356789999987734555555678899999875432 22211100 002345
Q ss_pred EEEECCCCCEEEEEc-CCeEEEEeccCCCCceeeee
Q 011257 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ 380 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~-d~~i~iwd~~~~~~~~~~~~ 380 (490)
.+++. .+.++.+-. .+.|..+|..+ ++.+..+.
T Consensus 295 gl~v~-~~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 328 (400)
T 3p5b_L 295 SLAVF-EDKVFWTDIINEAIFSANRLT-GSDVNLLA 328 (400)
T ss_dssp EEEEE-TTEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred EEEEe-CCEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence 66663 233333333 37888888665 66555554
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.26 E-value=0.1 Score=46.96 Aligned_cols=118 Identities=7% Similarity=0.080 Sum_probs=67.9
Q ss_pred cccceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 232 ~~~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
....+..+.+.+++..++.+.+|.+++.+.. .+.....+... .+ .....+..+++.|++ .+++++ .+|.+ ++.
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D-~G~tW~~~~~~--~~-~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S 275 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD-NSENWGELLSP--LR-RNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCS 275 (327)
T ss_dssp SSSCEEEEEECTTSCEEEEETTTEEEEEETT-EEEEECCCBCT--TS-SCCSCEEEEEESSSS-CEEEEE-STTCE-EEE
T ss_pred CCCccceeEECCCCCEEEEeCCceEEEecCC-CCCeeEeccCC--cc-cCCcceEEEEecCCC-EEEEEe-CCCeE-EEe
Confidence 3456788899999988877778887776422 23332211100 01 123458899999876 666654 46766 344
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEec
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~ 369 (490)
...++. ...+..... +...+.++.|.++++.+++|.+|.|.-++-
T Consensus 276 ~DgG~t-W~~~~~~~~------------~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 276 QDGGQT-WQQDVDVKK------------VPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp SSTTSS-CEECGGGTT------------SSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCCcc-cEEcCccCC------------CCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 444431 111111000 113577888887777777888898776653
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.19 E-value=0.093 Score=46.49 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE-c
Q 011257 283 EVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D 360 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~ 360 (490)
.....++..++| +..++++.. +.|...+...... ..+...... .......+.|+++|+|+.|++. +
T Consensus 137 ~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~~-----~~~~~~~~~------~~~~~G~nGIv~~pdg~~Liv~~~ 204 (334)
T 2p9w_A 137 FGVVQSAQDRDG-NSYVAFALGMPAIARVSADGKTV-----STFAWESGN------GGQRPGYSGITFDPHSNKLIAFGG 204 (334)
T ss_dssp EEEEEEEECTTS-CEEEEEEESSCEEEEECTTSCCE-----EEEEECCCC------SSSCCSCSEEEEETTTTEEEEESS
T ss_pred cCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCCEE-----eeeeecCCC------cccccCcceEEEeCCCCEEEEEcC
Confidence 347899999999 899988888 8887777654321 222111100 0011346789999999988886 4
Q ss_pred CCeEEEEeccC
Q 011257 361 YMTLKLWDINM 371 (490)
Q Consensus 361 d~~i~iwd~~~ 371 (490)
.+.|..+|+..
T Consensus 205 ~g~L~~fD~~~ 215 (334)
T 2p9w_A 205 PRALTAFDVSK 215 (334)
T ss_dssp SSSEEEEECSS
T ss_pred CCeEEEEcCCC
Confidence 69999999874
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.18 E-value=0.007 Score=60.83 Aligned_cols=208 Identities=10% Similarity=-0.009 Sum_probs=109.8
Q ss_pred ccEEEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeeccc
Q 011257 36 DIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (490)
Q Consensus 36 ~~V~~~~~s~dg~~latg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (490)
..+..++|++.+..|+... ..+.|..+++.+.... . . ....+.... ..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-~----------------~--~~~~i~~~~------------~~ 454 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-S----------------S--YDTVISRDI------------QA 454 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC--C----------------C--CCCBCCSCC--------------
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-c----------------c--eEEEEeCCC------------CC
Confidence 4567888998766666654 4578888887641100 0 0 000010000 12
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCC
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~ 194 (490)
...|++.+ ..+.++++-...+.|.+.++.+.....+..... ..|..+++.|.+..
T Consensus 455 P~glavD~-~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------------~~P~giavDp~~g~--------- 509 (699)
T 1n7d_A 455 PDGLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------------SKPRAIVVDPVHGF--------- 509 (699)
T ss_dssp CCCEECCC-SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------------CCCCCEECCSSSSC---------
T ss_pred cceEEEEe-eCCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------------CCcceEEEccCCCc---------
Confidence 34466653 234455555667889999988765544432111 23447788886652
Q ss_pred CCccccCCC-CCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeee
Q 011257 195 NDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 271 (490)
Q Consensus 195 ~~~l~~~~~-~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~ 271 (490)
++++... .+.|...+ ..+.. ...+....-.....|+|+|++..|+.+ ..+.|..+++.... ...++
T Consensus 510 --ly~td~~~~~~I~~~~-~dG~~-------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~ 578 (699)
T 1n7d_A 510 --MYWTDWGTPAKIKKGG-LNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL 578 (699)
T ss_dssp --CEECCCSSSCCEEBCC-SSSCC-------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEEC
T ss_pred --EEEcccCCCCeEEEEe-CCCCC-------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEE
Confidence 2222222 25666654 11111 111111112345689999987777666 57789999987322 22221
Q ss_pred ecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
. ..........+++..+ .++++....+.|..+|..+++.
T Consensus 579 ~-----~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 579 E-----DEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp C-----CSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred e-----cCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence 1 1111122344555443 5666667778999999877654
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.15 E-value=0.27 Score=49.90 Aligned_cols=207 Identities=10% Similarity=0.005 Sum_probs=112.9
Q ss_pred cceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeE----EEEeeeccCCCcCCCCCCccccccccCceEEeccCCcccc
Q 011257 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (490)
Q Consensus 113 ~~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~ 188 (490)
..+..|+|.+ .++.++++-...+.|+.+++..... ..+... ....|..+++.+.++.
T Consensus 424 ~~~~gl~~d~-~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---------------~l~~P~GLAvD~~~~~--- 484 (791)
T 3m0c_C 424 RNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSN--- 484 (791)
T ss_dssp SSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECS---------------SCSCCCEEEEETTTTE---
T ss_pred CceEEEeecc-cCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---------------CCCCcceeeeeecCCc---
Confidence 4467888875 2344555556668888888875321 111110 1123447788877653
Q ss_pred ccccCCCCccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--c-CCcEEEEEcCCCC
Q 011257 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISN 265 (490)
Q Consensus 189 ~~~~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~~wd~~~~~ 265 (490)
+.++-...+.|.+.+ +.+. ....+..........|++.|.+..|+.. . .+.|...++....
T Consensus 485 --------LY~tD~~~~~I~v~~-ldG~-------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 485 --------IYWTDSVLGTVSVAD-TKGV-------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp --------EEEEETTTTEEEEEE-TTSS-------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred --------EEEEecCCCeEEEEe-CCCC-------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 445556677787766 2211 1112212223457899999986666665 2 3678888887333
Q ss_pred ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceE
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 345 (490)
...++ .........|++++.+.+++++=...+.|...|+..... ..+..... ......
T Consensus 549 -~~~lv-------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-----~~v~~~~~---------~l~~P~ 606 (791)
T 3m0c_C 549 -IYSLV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-----KTILEDEK---------RLAHPF 606 (791)
T ss_dssp -EEEEE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECTT---------TTSSEE
T ss_pred -eEEEE-------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-----EEEecCCC---------ccCCCC
Confidence 22221 223356889999987635555545567899999875432 22211100 001234
Q ss_pred EEEECCCCCEEEEEc--CCeEEEEeccCCCCceeee
Q 011257 346 DIKFARNGRHILSRD--YMTLKLWDINMDSGPVATF 379 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~ 379 (490)
+|++. +.+|+..+ .+.|...|..+ ++.+..+
T Consensus 607 glav~--~~~lYwtD~~~~~I~~~dk~t-G~~~~~l 639 (791)
T 3m0c_C 607 SLAVF--EDKVFWTDIINEAIFSANRLT-GSDVNLL 639 (791)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTT-CCCCEEE
T ss_pred EEEEe--CCEEEEEECCCCEEEEEeCCC-CcceEEe
Confidence 56664 33555543 37888888665 5444444
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.12 E-value=0.25 Score=48.85 Aligned_cols=247 Identities=10% Similarity=-0.006 Sum_probs=137.7
Q ss_pred EEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccCCCCccccCCCCCcE
Q 011257 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (490)
Q Consensus 128 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~~l~~~~~~g~v 207 (490)
+|+.+ ....|+..++.+........... ...+..++|.+.+.. ..++...++.|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~--------------~~~~~~l~~d~~~~~-----------lywtD~~~~~I 61 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTG--------------VKEASALDFDVTDNR-----------IYWTDISLKTI 61 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCS--------------CSCEEEEEEETTTTE-----------EEEEETTTTEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCC--------------CCceEEEEEECCCCE-----------EEEEECCCCeE
Confidence 44444 45688999988754333222111 012337888886653 34455566777
Q ss_pred EEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeeeeecCCCccCCCCCce
Q 011257 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (490)
Q Consensus 208 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v 285 (490)
..++ ..+... .............+++.+.+..|+.+ ..+.|.+.++..... ..++ .......
T Consensus 62 ~r~~-~~g~~~-------~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~-------~~~l~~P 125 (628)
T 4a0p_A 62 SRAF-MNGSAL-------EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLV-------WKDLDSP 125 (628)
T ss_dssp EEEE-TTSCSC-------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEE-------CSSCCCE
T ss_pred EEEE-CCCCCc-------EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEE-------eCCCCCc
Confidence 7665 222111 11111111346688998876666665 578899999874332 1211 1233457
Q ss_pred EEEEEcCCCCcEEEEE-eCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--CC
Q 011257 286 TSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM 362 (490)
Q Consensus 286 ~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~ 362 (490)
..+++.|....++.+- +..+.|...++..... ..+... ......|+++++++.|..++ .+
T Consensus 126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-----~~l~~~------------~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-----TTLVPN------------VGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECS------------CSSEEEEEEETTTTEEEEEETTTT
T ss_pred ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-----EEEECC------------CCCcceEEEccccCEEEEEECCCC
Confidence 8999999652444443 2356788888765432 121111 14568899999888777764 38
Q ss_pred eEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCC
Q 011257 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (490)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 442 (490)
.|...|++. .. ...+...... -..+++.. +.+.++-...+.|...|..+|+. ...+.....
T Consensus 189 ~I~~~d~dG-~~-~~v~~~~l~~---------------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~ 249 (628)
T 4a0p_A 189 LIESSNMLG-LN-REVIADDLPH---------------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLD 249 (628)
T ss_dssp EEEEEETTS-CS-CEEEEECCSC---------------EEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCC
T ss_pred EEEEEcCCC-Cc-eEEeeccCCC---------------ceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCC
Confidence 999999874 22 2333221110 12677754 44444544578999999888865 344443333
Q ss_pred ceEEE-EEccC
Q 011257 443 PMRRQ-VQTPS 452 (490)
Q Consensus 443 ~v~~~-~~sp~ 452 (490)
....+ .+++.
T Consensus 250 ~p~~i~v~~~~ 260 (628)
T 4a0p_A 250 YVMDILVFHSS 260 (628)
T ss_dssp SCCEEEEECGG
T ss_pred Ccceeeeeeec
Confidence 33343 45543
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.12 E-value=0.088 Score=48.21 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=97.8
Q ss_pred EecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCC--CCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccc
Q 011257 240 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (490)
Q Consensus 240 ~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~ 317 (490)
....++.-++.+.++.||.-++... ..++.+.. .. .-..+..+..+|+| ++||..+ +..|.|-.+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~-~~Yk~L~~-----~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTD-SLYHSLNF-----SRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTC-SSCEEEEC-----TTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEECCEEEEEECCCC-CcceEEec-----CcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccc
Confidence 3445677888887889998888743 35555422 21 12246779999999 8888765 45789988884321
Q ss_pred ccc------c--cceeccccCCCccccccccccceEEEEECC---CCCEEEE-EcCCeEEEEeccCC-CCceeeeeeecc
Q 011257 318 CDT------H--SKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILS-RDYMTLKLWDINMD-SGPVATFQVHEH 384 (490)
Q Consensus 318 ~~~------~--~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp---~g~~l~s-g~d~~i~iwd~~~~-~~~~~~~~~~~~ 384 (490)
... + .+.+..... ......+|..+.|+| .+..|++ -+|+.|++||+... .++. .++....
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 110 0 112221110 011236799999999 3446666 57899999999852 2333 3331111
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEE--eecCCeEEEE
Q 011257 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRVF 425 (490)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~~~dg~i~vw 425 (490)
.+.......+|.+++|..++-.|.. .+..|.|+-.
T Consensus 172 ------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 ------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1111122345779999998775555 4477887644
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.02 E-value=0.11 Score=47.31 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=35.1
Q ss_pred eEEEcCCCCEEEEeecCCeEEEEecCCCcee-----eeEeccCCCceEEEEEccCCCCCCCC
Q 011257 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-----STTLEASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 403 ~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~~v~~~~~sp~~~~~~~~ 459 (490)
.++| .+|.++++.-..+.|...+++..... ...+......+..+++.|||......
T Consensus 272 G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 272 NLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred ceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 6677 46777666666778888887744310 11221224678999999999654433
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.97 E-value=0.16 Score=46.18 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=36.3
Q ss_pred eeEEEc-------CCCCEEEEeecCCeEEEEecCCC-cee-eeE-eccCCCceEEEEEccCCCCCC
Q 011257 402 FECCLS-------GDGGRVATGSYSNLFRVFGCSEG-SAE-STT-LEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 402 ~~~~~s-------~d~~~l~s~~~dg~i~vw~~~~~-~~~-~~~-~~~~~~~v~~~~~sp~~~~~~ 457 (490)
..++|. .+|.++++.-..+.|...++... +.. ... +......+..+++.|||....
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv 327 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILI 327 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEE
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEE
Confidence 467773 56777776667788998888753 221 122 223346789999999995433
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.95 E-value=0.17 Score=45.94 Aligned_cols=57 Identities=7% Similarity=-0.069 Sum_probs=36.6
Q ss_pred eeeEEEcC-------CCCEEEEeecCCeEEEEecCCCceee-e-EeccCCCceEEEEEccCCCCCC
Q 011257 401 KFECCLSG-------DGGRVATGSYSNLFRVFGCSEGSAES-T-TLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 401 v~~~~~s~-------d~~~l~s~~~dg~i~vw~~~~~~~~~-~-~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
...+.|.. +|+++++.-..+.|...+++.++..- . .+......+..+++.|||....
T Consensus 273 p~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv 338 (353)
T 2g8s_A 273 VSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYV 338 (353)
T ss_dssp EEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEE
T ss_pred cceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEE
Confidence 34677753 46677766677888888888654211 1 1223335789999999997443
No 303
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.92 E-value=0.16 Score=45.50 Aligned_cols=203 Identities=9% Similarity=0.132 Sum_probs=107.7
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCC----CCE---EE-Ee-c--CCcEEEEEcCCCC
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GET---FI-SA-D--DLRINLWNLEISN 265 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~---l~-~~-~--d~~i~~wd~~~~~ 265 (490)
.++...+.+-+.+|| +.+... +.+ .. ..++.+.+-|. |+. ++ +. . +++|.+|++....
T Consensus 42 ~ii~t~k~~gL~Vyd-l~G~~l-------~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 42 KLITTNKKSGLVVYS-LDGKML-------HSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp EEEEEETTTEEEEEE-TTSCEE-------EEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred EEEEEcCCCCEEEEc-CCCcEE-------EEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 555566678899999 333222 222 11 34455544442 322 23 33 5 6899999874222
Q ss_pred ceeeeeecCCCccCCCCCceEEEEE--cCCCCc-EEEEEeCCCeEEEEeCC---CccccccccceeccccCCCccccccc
Q 011257 266 QSFNIVDVKPANMEDLTEVITSAEF--HPTHCN-MLAYSSSKGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE 339 (490)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
..+..+......+......+..+++ +|.... +++....+|.+..|++. .+....+.++.|...
T Consensus 111 ~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg----------- 179 (355)
T 3amr_A 111 GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN----------- 179 (355)
T ss_dssp CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-----------
T ss_pred CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-----------
Confidence 2233220000000011145666777 775423 57777888999999883 333333335666554
Q ss_pred cccceEEEEECCCCCEEEEEc-CCeEEEEeccCCC----CceeeeeeeccccccccccccCCCccceeeEEE--cCCCC-
Q 011257 340 IIASISDIKFARNGRHILSRD-YMTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGG- 411 (490)
Q Consensus 340 h~~~i~~l~~sp~g~~l~sg~-d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~- 411 (490)
..+..+...+....|+.+. +..|..++.+... +.+..+.. ... ..++-.+++ .++++
T Consensus 180 --sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l------------~aDvEGLai~~~~~g~g 244 (355)
T 3amr_A 180 --SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHL------------TRDIEGLTIYYAADGKG 244 (355)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSB------------CSCEEEEEEEECGGGCE
T ss_pred --CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-Ccc------------ccCcceEEEEecCCCCE
Confidence 4577888888777888874 4445555544211 12222211 100 112335666 56666
Q ss_pred EEEEee-cCCeEEEEecC-CCceeeeEe
Q 011257 412 RVATGS-YSNLFRVFGCS-EGSAESTTL 437 (490)
Q Consensus 412 ~l~s~~-~dg~i~vw~~~-~~~~~~~~~ 437 (490)
+|++.+ .++++.|||.+ +.+. +..+
T Consensus 245 yLivSsQG~~s~~Vydr~~~~~~-vg~f 271 (355)
T 3amr_A 245 YLMASSQGNSSYAIYDRQGKNKY-VADF 271 (355)
T ss_dssp EEEEEEGGGTEEEEEESSTTCCE-EEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCcE-EEEE
Confidence 666666 67899999997 4433 3444
No 304
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.83 E-value=0.26 Score=44.38 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=25.5
Q ss_pred cccEEEEEECCCCCEEEEecCCCcEEEEEecCC
Q 011257 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg~~dg~v~iwd~~~~ 67 (490)
-..-+.|+|.|||.++++--..|.|++++..++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 345689999999998877655889988875443
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.83 E-value=0.27 Score=44.63 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=39.6
Q ss_pred CceEEEEEc-------CCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCE
Q 011257 283 EVITSAEFH-------PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (490)
Q Consensus 283 ~~v~~~~~~-------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 355 (490)
..+..++|. .++ .++++.-..+.|...++........ ...+. .+-...+..+++.|||.+
T Consensus 259 ~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~-----------~~~~~rp~~v~~~pDG~l 325 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRK-ISTFF-----------KNVFGRLRDVVIDDDGGI 325 (354)
T ss_dssp CCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEE-EEEEC-----------TTTSCCEEEEEECTTSCE
T ss_pred cCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccc-eeeec-----------cCCCCCeeEEEECCCCcE
Confidence 457788884 466 6777776778888888775321100 01111 011146889999999987
Q ss_pred EEEEc
Q 011257 356 ILSRD 360 (490)
Q Consensus 356 l~sg~ 360 (490)
+++..
T Consensus 326 yv~~~ 330 (354)
T 3a9g_A 326 LISTS 330 (354)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77653
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.80 E-value=0.052 Score=51.43 Aligned_cols=144 Identities=12% Similarity=0.034 Sum_probs=85.1
Q ss_pred CceEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEE-------CCCCC
Q 011257 283 EVITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGR 354 (490)
Q Consensus 283 ~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~-------sp~g~ 354 (490)
.....|+|+|. +.+++++-...+.|++.|+..+.+ ..+..... ........|+| +++|+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v-----~~l~~~~~--------~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML-----SSPLNINT--------IPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE-----EEEECCTT--------SSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE-----EEEEccCc--------cccCCCcEEEEeecccccCCCCC
Confidence 35678999983 425666655567899999988653 22221110 00135789999 99999
Q ss_pred EEEEEcC-C-------eEEEEeccCCCCce-----eeeeeeccccccccccccCCCccceeeEEEcCC-CCEEEEeecCC
Q 011257 355 HILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSN 420 (490)
Q Consensus 355 ~l~sg~d-~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg 420 (490)
+|+.+++ + .|.+.+....+... ..+..... ...++++|+ +.++++-..++
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g 269 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKG 269 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTT
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCC
Confidence 7776643 2 25566543212221 12221111 127899995 55555666788
Q ss_pred eEEEEecC-------CCce------e----e-eEec-cCCCceEEEEEccCCCC
Q 011257 421 LFRVFGCS-------EGSA------E----S-TTLE-ASKNPMRRQVQTPSRPS 455 (490)
Q Consensus 421 ~i~vw~~~-------~~~~------~----~-~~~~-~~~~~v~~~~~sp~~~~ 455 (490)
.|..+|+. ++.. . . ..+. +.....+.++|+|++..
T Consensus 270 ~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~ 323 (496)
T 3kya_A 270 QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKY 323 (496)
T ss_dssp EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSE
T ss_pred EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCE
Confidence 89999998 5543 0 1 1111 22345689999999984
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.77 E-value=0.5 Score=46.70 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=110.5
Q ss_pred cccEEEEEECCCCCEEEEe-cCCCcEEEEEecCCCCCCCcccccccccceeecCCccccccccccCCcccceeeeeeecc
Q 011257 35 VDIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (490)
Q Consensus 35 ~~~V~~~~~s~dg~~latg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (490)
-..+..++|++.+..|+.+ ..++.|..+++...... ..+.... .
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-----------------------~v~~~g~------------~ 80 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-----------------------HVVEFGL------------D 80 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------------EEECSSC------------S
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-----------------------EEEeCCC------------C
Confidence 3467899999966655544 46678888887654310 1111110 2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccccC
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~ 193 (490)
....|++.+ ..++++++-...+.|.+.++++.....+.... ...|..+++.|....
T Consensus 81 ~P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------------l~~P~~iavdp~~G~-------- 136 (628)
T 4a0p_A 81 YPEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------------LDSPRALALDPAEGF-------- 136 (628)
T ss_dssp CCCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------------CCCEEEEEEETTTTE--------
T ss_pred CcceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------------CCCcccEEEccCCCe--------
Confidence 245666654 23445556566788999998876433332111 123457888885442
Q ss_pred CCCccccC-CCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceeee
Q 011257 194 SNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNI 270 (490)
Q Consensus 194 ~~~~l~~~-~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~~ 270 (490)
+.++- +..+.|...+ .+... ...+. ..-.....++++++++.|..+ ..+.|...++..... ++
T Consensus 137 ---lY~tD~g~~~~I~r~~----~dG~~----~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v 202 (628)
T 4a0p_A 137 ---MYWTEWGGKPKIDRAA----MDGSE----RTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EV 202 (628)
T ss_dssp ---EEEEECSSSCEEEEEE----TTSCS----CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE
T ss_pred ---EEEeCCCCCCEEEEEe----CCCCc----eEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EE
Confidence 22222 2244555544 11111 11111 122456789999988888777 578899999874433 22
Q ss_pred eecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCc
Q 011257 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (490)
Q Consensus 271 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~ 315 (490)
+ .........+++.. + .++.+-...+.|...|..++
T Consensus 203 ~-------~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 203 I-------ADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp E-------EECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred e-------eccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 2 11123345676654 3 56666656777777775544
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.72 E-value=0.83 Score=48.61 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=31.7
Q ss_pred eccceeEEEEeecCC----CcEEEEEeC-cCeEEEEEccCCeEEEEee
Q 011257 111 IEEKINKIRWCQSAN----SALYLLSTN-DKTIKLWKVQEKKVKKVFD 153 (490)
Q Consensus 111 ~~~~V~~v~~~p~~~----~~~l~~~~~-dg~i~lwd~~~~~~~~~~~ 153 (490)
.+..|.|+++.|.++ +.+++.|.. |++++|+++.+.+......
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~ 599 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM 599 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE
Confidence 346699999986432 468888886 9999999998766554433
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.71 E-value=0.34 Score=44.01 Aligned_cols=64 Identities=9% Similarity=0.196 Sum_probs=39.1
Q ss_pred CceEEEEEcC-------CCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCE
Q 011257 283 EVITSAEFHP-------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (490)
Q Consensus 283 ~~v~~~~~~p-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 355 (490)
..+..++|.. ++ .+|++....+.|...++..++.... ..+ +......+..+++.|||.+
T Consensus 271 ~ap~G~~~y~g~~fp~~~g-~l~v~~~~~~~v~~~~~~~~~~~~~--~~~-----------~~~~~~rp~~v~~~pdG~l 336 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQ-KLFIGALKDKDVIVMSVNGDKVTED--GRI-----------LTDRGQRIRDVRTGPDGYL 336 (353)
T ss_dssp CCEEEEEEECCSSSGGGTT-EEEEEETTTTEEEEEEEETTEEEEE--EEE-----------SGGGCCCEEEEEECTTSCE
T ss_pred cCcceeEEECCccCcccCC-cEEEEEccCCEEEEEEeCCCeEeee--EEc-----------ccCCCCceeEEEECCCCcE
Confidence 3567788864 45 6777766778888777765432110 011 1111246899999999987
Q ss_pred EEEEc
Q 011257 356 ILSRD 360 (490)
Q Consensus 356 l~sg~ 360 (490)
+++.+
T Consensus 337 yv~td 341 (353)
T 2g8s_A 337 YVLTD 341 (353)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77644
No 310
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.71 E-value=0.31 Score=43.59 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=68.4
Q ss_pred ccccCCCCCcEEEeeeecccccccccceeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC----ceeeee
Q 011257 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN----QSFNIV 271 (490)
Q Consensus 197 ~l~~~~~~g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~----~~~~~~ 271 (490)
++++...+|.+..|++..........+..+.+.. ...+..+...+....|+.+ ++.-|..++.+... ..+..+
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~ 222 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe
Confidence 6788888899999996544444344555555532 2567888899988888888 66556666644221 122211
Q ss_pred ecCCCccCCCCCceEEEEE--cCCCCcEEEEEe-CCCeEEEEeCC
Q 011257 272 DVKPANMEDLTEVITSAEF--HPTHCNMLAYSS-SKGSIRLIDMR 313 (490)
Q Consensus 272 ~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~-~dg~i~iwd~~ 313 (490)
........+..+++ .+++..+|++++ .+.++.+||..
T Consensus 223 -----~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 -----DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -----SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -----cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 11222345777777 455522454444 57899999986
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.36 E-value=0.21 Score=45.40 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=62.4
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC---CCcEEEEEeCC-----C
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G 305 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d-----g 305 (490)
.....++|.|+|+++++-.++.|.+++ . .. ...+.++. ...........++++|+ +..++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 345789999999977766669999998 3 22 21111111 12223456889999998 41444444432 6
Q ss_pred eEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEE
Q 011257 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (490)
Q Consensus 306 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s 358 (490)
.|..++...+... .....+...... .-..| ....++|.|||.+.++
T Consensus 106 ~v~r~~~~~~~~~-~~~~l~~~~p~~----~~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 106 QVVRLRHLGERGV-LDRVVLDGIPAR----PHGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEECCC----TTCCC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCcC-ceEEEEEeCCCC----CCCCc--CCceEEECCCCCEEEE
Confidence 7888887643210 000111100000 00112 2368999999987776
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.35 E-value=0.13 Score=47.06 Aligned_cols=125 Identities=11% Similarity=0.193 Sum_probs=79.1
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCce-----------eeeeecCCCccCCCCCceEEEEEcCCCC--cEEEEE
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQS-----------FNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS 301 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~ 301 (490)
.+..+..+|+|++||...+..|.+-.+...... ...+.+.+.+ .....+|..+.|||-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 567799999999999987788999888732110 1122222111 11357899999999653 489999
Q ss_pred eCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEE--cC-CeEEE
Q 011257 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY-MTLKL 366 (490)
Q Consensus 302 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg--~d-~~i~i 366 (490)
..|+.||+||+.... .++. .+.... ..--.......|.+++|.+++-.|... +. |.|+-
T Consensus 146 tsD~~Ir~yDl~~s~--~~P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQ--EKPI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTT--SCCE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCC--CCCc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999999998732 2222 232110 000011223578999999988766653 34 77764
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.21 E-value=0.45 Score=42.80 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=63.8
Q ss_pred cceeEEEecCCCCEEEEe-cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC----CCcEEEEE--eCCCe
Q 011257 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYS--SSKGS 306 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~--~~dg~ 306 (490)
...+.|+|.|+|.++++- ..|.|++++..... ...+..+ +............|+++|+ + .++++- ..++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~-~~v~~~g~~GllGia~~Pdf~~~g-~lYv~yt~~~~~~ 108 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEV-PGVSPSGEGGLLGIALSPDYASDH-MVYAYFTSASDNR 108 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEEC-TTCCCBTTBSEEEEEECTTHHHHC-EEEEEEECSSSEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-Eeeeccc-CceeecCCCCceeeEeccccccCC-EEEEEEecCCCCE
Confidence 456799999999988888 59999999765332 2111111 1112334567899999995 4 444432 24556
Q ss_pred EEEEeCCCcc----ccccccceeccccCCCccccccccccceEEEEECCCCCEEEE
Q 011257 307 IRLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (490)
Q Consensus 307 i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~s 358 (490)
|.-|.+..+. ........+..... -..| .-..|.|.|||.+.++
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEE
Confidence 6666665421 01000011111000 0112 3467999999987777
No 314
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.14 E-value=0.24 Score=40.94 Aligned_cols=147 Identities=8% Similarity=-0.117 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccc-cccccceEEEEECCCCCEEEEEcCC
Q 011257 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILSRDYM 362 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~g~~l~sg~d~ 362 (490)
.+..++|+|++ .+.+. .+|.+.-.+..+... ..+-.... .+- .+- ....++.|.|+|.+.++ +||
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~t----~IG~~Gw-~~F~a~~fD~~G~LYav-~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRAK----KIGNGGW-NQFQFLFFDPNGYLYAV-SKD 107 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHCE----EEECSCG-GGCSEEEECTTSCEEEE-ETT
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----cccccccc----Eeccccc-ccceEEEECCCCCEEEe-CCC
Confidence 56699999998 66666 777766666544221 11111100 000 000 12478999999998888 779
Q ss_pred eEEEEeccCCCCc--ee--eeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCcee-----
Q 011257 363 TLKLWDINMDSGP--VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE----- 433 (490)
Q Consensus 363 ~i~iwd~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~----- 433 (490)
.|.-++.-+.+.. +. +..+... ..++..+.|.|+|.+.+.. |+.++-+...++...
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~g-------------w~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~ 172 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGG-------------WSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLAR 172 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSS-------------GGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHH
T ss_pred EEEEeCCCcCCCCceeccccEeccCC-------------CCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccc
Confidence 8887775321111 00 1111111 1124589999999988776 777544443322210
Q ss_pred eeEec-cCCCceEEEEEccCCCCCCCC
Q 011257 434 STTLE-ASKNPMRRQVQTPSRPSRPLG 459 (490)
Q Consensus 434 ~~~~~-~~~~~v~~~~~sp~~~~~~~~ 459 (490)
...+. ..-..-+-+.|.|++......
T Consensus 173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp CEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred cceeccCCcceEEEEEECCCCcEEEEe
Confidence 11111 233345557788888765544
No 315
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.14 E-value=0.29 Score=40.44 Aligned_cols=115 Identities=12% Similarity=0.009 Sum_probs=63.8
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCcc--CCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd 311 (490)
..+..++|+|+|.+.+. .+|.++-.+..+.. ....+.. ...+ .+-. ....+.|.|+| .+.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~-~~~W~~s-~t~IG~~Gw~-~F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHD-NDNWMGR-AKKIGNGGWN-QFQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCST-TCCHHHH-CEEEECSCGG-GCSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCC-ccccccc-ccEecccccc-cceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 36679999999987777 77766665553211 1000000 0000 0111 14688999999 66665 669988777
Q ss_pred CCCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEE
Q 011257 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (490)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~ 365 (490)
-.+... ..+.... ..+-.+--..+..|.|.|+|.+.+.. ++.+.
T Consensus 114 pP~~~~-----~~Wl~~a----~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 114 PPQSDT-----DNWIARA----TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp CCCSTT-----CCHHHHS----EEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CCcCCC-----Cceeccc----cEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 543221 1111000 00000001357999999999998888 87744
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.87 E-value=0.59 Score=44.05 Aligned_cols=117 Identities=11% Similarity=0.077 Sum_probs=61.6
Q ss_pred cceeEEEecCCCCEEEEec-CCcEEEEEcCCCCceeeeeecCCCc-cCCCCCceEEEEEcCC---CCcEEEEEeC-----
Q 011257 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPAN-MEDLTEVITSAEFHPT---HCNMLAYSSS----- 303 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~---~~~~l~~~~~----- 303 (490)
.....|+|.|+|+++++-. .+.|++++.... ....+..+.... .......+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g-~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESG-SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCC-cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3557999999999888874 457888876422 222222111110 0123566889999995 4144444432
Q ss_pred -------CCeEEEEeCCCccc-cccccceeccccCCCccccccccccceEEEEECCCCCEEEEE
Q 011257 304 -------KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (490)
Q Consensus 304 -------dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg 359 (490)
...|.-+++..... .......+..... ...| ....|+|.|||.+.++-
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H--~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDH--QSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSC--CEEEEEECTTSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCC--CCCeEeECCCCeEEEEE
Confidence 23455555533210 0000011111000 0112 46889999999887773
No 317
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.25 E-value=1.5 Score=38.76 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=106.1
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-------CCeE
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSI 307 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------dg~i 307 (490)
.|.-=.|-.+ +.|+.-.+..|+-|++.......++++-. ..+. ...|..-..+++. ++++..+- .|.+
T Consensus 108 ~VvfWkWis~-~~L~lVT~taVyHWs~~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 108 DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp CEEEEEECSS-SEEEEEESSEEEEEESSTTCCCEEEEECC-GGGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEecCC-CeEEEEcCCcEEEEcccCCCCCceeeecc-hhcc--cceEEEEEECCCC-CEEEEEeEeccCCccceeE
Confidence 4444445433 34555566789999998544454444321 1232 4667788888888 55544332 3677
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEECC--C-CCEEEEEc---C-CeEEEEeccCC--CCceee
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--N-GRHILSRD---Y-MTLKLWDINMD--SGPVAT 378 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp--~-g~~l~sg~---d-~~i~iwd~~~~--~~~~~~ 378 (490)
.+|..+.+. ...+++|. .....+.+.. . ...++.+. . +.+.|-++..+ +.+...
T Consensus 183 QLYS~er~~-----sQ~ieGha------------a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~ 245 (365)
T 2xzh_A 183 QLYSVDRKV-----SQPIEGHA------------ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 245 (365)
T ss_dssp EEEETTTTE-----EEEECCSE------------EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCC
T ss_pred EEEeecccc-----cceeeeee------------eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcc
Confidence 888877653 24455542 3333332221 1 12333232 2 68999998642 221111
Q ss_pred eeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
.+.-+-. -..+...-++| ++..|+.-..+..-+.-|.|++||+++|.+ +..-+...++|-.-+.+.
T Consensus 246 kk~vdi~-----fppea~~DFPV-amqvs~kygviyviTK~G~ihlyDleTgt~-i~~nrIS~d~iF~ta~~~ 311 (365)
T 2xzh_A 246 KKAVDVF-----FPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHE 311 (365)
T ss_dssp CEEEEEC-----CCTTCTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEEG
T ss_pred cccceee-----CCccccCCceE-EEEecccCCEEEEEeCCcEEEEEEcccCcE-EEEeccCCCceEEecccC
Confidence 1100000 00000111233 788898888888889999999999999998 567777777887666443
No 318
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.45 E-value=4.2 Score=40.06 Aligned_cols=172 Identities=9% Similarity=0.000 Sum_probs=93.0
Q ss_pred EEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCCccccccccceec
Q 011257 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 247 ~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
+|+.+..+.|+..++.........+ .+. ....+..++|.+.+..++.+-...+.|+.+++..... ..+.
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~~-----~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-----~~v~ 387 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIVL-----QLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-----QFVV 387 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEEC-----CCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEE
T ss_pred EEEEEcccceEEEecCCCccceeEE-----ecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-----EEEE
Confidence 3444444556666665433211111 111 1244678999986535566656688899998875432 1111
Q ss_pred cccCCCccccccccccceEEEEECCCCCEEEEEc--CCeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeE
Q 011257 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (490)
Q Consensus 327 ~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (490)
... ......+++...+..|+.++ .+.|.+.+++ +.....+....... -..+
T Consensus 388 ~~~-----------~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~--G~~~~~l~~~~l~~--------------P~~i 440 (619)
T 3s94_A 388 TAQ-----------IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN--GTMRKILISEDLEE--------------PRAI 440 (619)
T ss_dssp CSS-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECTTCCS--------------EEEE
T ss_pred ECC-----------CCCcCceEEecccCcEEEEeCCCCcEEEEeCC--CCeEEEEEECCCCC--------------eeeE
Confidence 110 03467889987666666553 3899999987 34333333211110 2389
Q ss_pred EEcCCCCEEEEeec--CCeEEEEecCCCceeeeEeccCCCceEEEEEccCCCCCC
Q 011257 405 CLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (490)
Q Consensus 405 ~~s~d~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~~ 457 (490)
++.|...+|..+.. .+.|...+++.... .......-.....+++.+++...-
T Consensus 441 avdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY 494 (619)
T 3s94_A 441 VLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIY 494 (619)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEE
Confidence 99997555544432 35677777663322 222233345567788877654433
No 319
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.43 E-value=2.4 Score=37.28 Aligned_cols=137 Identities=8% Similarity=0.019 Sum_probs=73.9
Q ss_pred EEecCCCCEEEEec---CC--cEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-CCeEEEEeC
Q 011257 239 ISNNSDGETFISAD---DL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDM 312 (490)
Q Consensus 239 i~~~~~~~~l~~~~---d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~ 312 (490)
..|+++++.|+-.. ++ .|+..++.... ..++ ..+.. ..++|++ +.|+-.+. ...|..-++
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~l--------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l 174 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKI--------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDT 174 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEE--------ESSCC----CCSEEET-TEEEEECTTTCCEEEEET
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEE--------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEEC
Confidence 36777888887653 34 44444554222 2222 11211 4567888 55654444 677888887
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc--C-CeEEEEeccCCCCceeeeeeeccccccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (490)
..+... ..+.+ ... ..++|++.+|+-.+ + ..|..-+++ +.....+....
T Consensus 175 ~g~~~~----~l~~~---------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~~------ 226 (302)
T 3s25_A 175 ASQSEA----LFYDC---------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEAN------ 226 (302)
T ss_dssp TTTEEE----EEECS---------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCSC------
T ss_pred CCCCEE----EEeCC---------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCCC------
Confidence 765421 11221 111 23569999988653 2 355555555 44444443211
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEee--cCCeEEEEecCCC
Q 011257 390 CDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSEG 430 (490)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~vw~~~~~ 430 (490)
...|+|++++|..++ ..+.|..-++...
T Consensus 227 -------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 227 -------------IEHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp -------------EEEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred -------------cceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 234788888887653 2456777777644
No 320
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.06 E-value=3 Score=36.88 Aligned_cols=167 Identities=7% Similarity=0.101 Sum_probs=88.8
Q ss_pred cceeEEEecCCCCEEEE-e---c----CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcC--CCCcEEEEEeC
Q 011257 234 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 303 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~-~---~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~ 303 (490)
..|..-..+++.++++. | . .|.+.+|..+.... + .+++|......+.+.- ....+|+.+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s--Q-------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--Q-------PIEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE--E-------EECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc--c-------eeeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45666677888888775 2 1 36788999873322 2 2466665554443321 11134554444
Q ss_pred C---CeEEEEeCCCcc-ccccc-cceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCcee
Q 011257 304 K---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVA 377 (490)
Q Consensus 304 d---g~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~ 377 (490)
. +.+++-++.... ..... .+..+..-.+.. -.+---++..|+.-..+..- ..|.|.+||+.+ +.++.
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea------~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i~ 295 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 295 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTC------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccc------cCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEEE
Confidence 2 588998885431 00000 011111100000 11334567777765566654 459999999998 88777
Q ss_pred eeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCc
Q 011257 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
.-+-..+. |+..+-+.+..=++.....|.|.--.++...
T Consensus 296 ~nrIS~d~---------------iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 296 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEECCSSC---------------EEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EeccCCCc---------------eEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 66555443 2233333333334444566766666665443
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.52 E-value=3.5 Score=35.99 Aligned_cols=148 Identities=10% Similarity=0.088 Sum_probs=71.3
Q ss_pred CCCEEEEe-cC-----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC-----CeEEEEeC
Q 011257 244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (490)
Q Consensus 244 ~~~~l~~~-~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (490)
++++++.| .+ ..+.+||..+.. ...+...+.....| ..+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGA----GLVVA--SG-VIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSC----EEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccc----eEEEE--CC-EEEEECCCCCCcccceEEEEeC
Confidence 56666665 32 357888887432 22211111111111 12222 55 788888765 45888998
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C-----CeEEEEeccCCCCceeeeeeecccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
.+.+- ..+..+ +.++ .....+.+ +++.++.|. + ..+.+||+.+ .+ ...+......
T Consensus 183 ~~~~W--~~~~~~-----p~~r-------~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~- 243 (301)
T 2vpj_A 183 HTGHW--TNVTPM-----ATKR-------SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT-DS-WTTVTSMTTP- 243 (301)
T ss_dssp TTTEE--EEECCC-----SSCC-------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEEECCCSSC-
T ss_pred CCCcE--EeCCCC-----Cccc-------ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC-Cc-EEECCCCCCc-
Confidence 77531 111111 1110 11122222 466666652 2 5788999875 32 2222111100
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecC-----CeEEEEecCCCce
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSA 432 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~vw~~~~~~~ 432 (490)
... ..++. -++++++.|+.+ ..|.+||+++.+-
T Consensus 244 ---------r~~---~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 244 ---------RCY---VGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ---------CBS---CEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred ---------ccc---eeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 000 12222 267788888765 3578888887653
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.66 E-value=6.2 Score=36.45 Aligned_cols=186 Identities=12% Similarity=0.109 Sum_probs=106.7
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeC-------CCeE
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSI 307 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------dg~i 307 (490)
.|.-=.|-. .+.|+...+..|+-|++........+++-. ..+. ...|..-..+++. ++++..+- .|.+
T Consensus 107 ~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 107 DVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp CCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEE
T ss_pred CceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccceE
Confidence 343334433 345555577889999997544444444321 1232 4667788888988 66553332 4677
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEECCC---CCEEEEEc----CCeEEEEeccCC--CCceee
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD----YMTLKLWDINMD--SGPVAT 378 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~---g~~l~sg~----d~~i~iwd~~~~--~~~~~~ 378 (490)
.+|..+.+. ...+++|. .....+.+..+ ...++.+. .+.+.|-++..+ +.+...
T Consensus 182 QLYS~er~~-----sQ~ieGha------------a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 182 QLYSVDRKV-----SQPIEGHA------------ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEESTTCC-----EEEECCSE------------EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEeeccccc-----cchheeee------------eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 888877653 24455543 44433433221 12333332 278999998642 111111
Q ss_pred eeeeccccccccccccCC--CccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEEcc
Q 011257 379 FQVHEHLRPKLCDLYEND--SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~sp 451 (490)
.+.-. -.+..+ .-++| ++..|+.-..+..-+.-|.|++||+.+|.+ +..-+...++|-.-+...
T Consensus 245 kk~vd-------v~fppe~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~-i~~nrIs~~~iF~t~~~~ 310 (494)
T 1bpo_A 245 KKAVD-------VFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHE 310 (494)
T ss_dssp CEEEE-------CCCCTTSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEET
T ss_pred ceeee-------eeCCcccccCcee-EEEecccCCEEEEEecCceEEEEeccccee-eeeecccCCceEEecccC
Confidence 11000 001111 11233 788999888898899999999999999998 566667777776655443
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.24 E-value=6.2 Score=35.45 Aligned_cols=27 Identities=4% Similarity=-0.006 Sum_probs=18.0
Q ss_pred cCCCCEEEEeecCC------eEEEEecCCCcee
Q 011257 407 SGDGGRVATGSYSN------LFRVFGCSEGSAE 433 (490)
Q Consensus 407 s~d~~~l~s~~~dg------~i~vw~~~~~~~~ 433 (490)
..++++++.|+.++ .|.++++++++..
T Consensus 314 ~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 314 PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 34778888888643 4666788888764
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.99 E-value=7.6 Score=35.90 Aligned_cols=167 Identities=7% Similarity=0.099 Sum_probs=93.6
Q ss_pred cceeEEEecCCCCEEEE-e---c----CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC--CCcEEEEEeC
Q 011257 234 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSS 303 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~-~---~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~ 303 (490)
..|..-..+++.++++. | . .|.+.+|..+..... .+++|......+...-+ ...+|+.+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 55666778889998875 2 2 367889998744322 35677666555544321 1135555555
Q ss_pred C---CeEEEEeCCCcc-cccc-ccceeccccCCCccccccccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCcee
Q 011257 304 K---GSIRLIDMRQSA-LCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVA 377 (490)
Q Consensus 304 d---g~i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~ 377 (490)
. +.++|-++.... .... ..+..+..-.+.. -.+--.++..|+.-..+..- ..|.|.+||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~------~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~ 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc------ccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeee
Confidence 3 789999986431 0000 0011111100000 11334667788766666655 459999999998 88777
Q ss_pred eeeeeccccccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCc
Q 011257 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~ 431 (490)
.-+..... |+..+-.....=++.....|.|.--.++...
T Consensus 295 ~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 66544433 2333444444444555567777666666544
No 325
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.95 E-value=8.3 Score=36.26 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=35.9
Q ss_pred cceeEEEecCCCC--EEEEecCCcEEEEEcCCCCceeeeeecCCCccC----CCCCceEEEEEcCC
Q 011257 234 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT 293 (490)
Q Consensus 234 ~~v~~i~~~~~~~--~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~ 293 (490)
...+.|+|.|++. +|++-..|.|++++.........+.++...... .....+..|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4557899999985 666658899999975422111111122111111 12466889999996
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.70 E-value=6.3 Score=34.38 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=17.3
Q ss_pred CCCEEEEeecCC-----eEEEEecCCCce
Q 011257 409 DGGRVATGSYSN-----LFRVFGCSEGSA 432 (490)
Q Consensus 409 d~~~l~s~~~dg-----~i~vw~~~~~~~ 432 (490)
++++++.|+.++ .+.+||+.+.+-
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 677888887653 488888887643
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.60 E-value=6.5 Score=34.36 Aligned_cols=24 Identities=0% Similarity=-0.067 Sum_probs=17.8
Q ss_pred CCCEEEEeecC-----CeEEEEecCCCce
Q 011257 409 DGGRVATGSYS-----NLFRVFGCSEGSA 432 (490)
Q Consensus 409 d~~~l~s~~~d-----g~i~vw~~~~~~~ 432 (490)
++++++.|+.+ ..+.+||+.+.+-
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 67788888754 5688899887653
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.42 E-value=12 Score=40.37 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=97.6
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe-------CCCeE
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSI 307 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i 307 (490)
.|.-=.|-.+ +.|+...+..|+-|++........+++-. ..+. ...|..-..+++. ++++..+ -.|.+
T Consensus 107 ~VvfWkWis~-~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 107 DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CceEEEecCC-CeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCccccee
Confidence 3433344333 34555567789999997433333222110 1122 4567777888888 5555333 24778
Q ss_pred EEEeCCCccccccccceeccccCCCccccccccccceEEEEEC--C-CCCEEEEEc----CCeEEEEeccCC--CCceee
Q 011257 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--R-NGRHILSRD----YMTLKLWDINMD--SGPVAT 378 (490)
Q Consensus 308 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s--p-~g~~l~sg~----d~~i~iwd~~~~--~~~~~~ 378 (490)
.+|....+. ...+++|. .....+... + ....++.+. .+.+.|-++..+ +.+...
T Consensus 182 QLyS~er~~-----sQ~iegha------------~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 182 QLYSVDRKV-----SQPIEGHA------------ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred eeeeccccc-----chhhhHhH------------hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence 888877653 23444443 333333322 1 122222221 278888888642 111111
Q ss_pred eeeecccccccccc-ccCC--CccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEeccCCCceEEEEE
Q 011257 379 FQVHEHLRPKLCDL-YEND--SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (490)
Q Consensus 379 ~~~~~~~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 449 (490)
.+ ..++ +..+ .-++| ++..|+.-..+..-+.-|.|.+||+.+|.+ +..-+...++|-..+.
T Consensus 245 kk--------~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~-i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 245 KK--------AVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAP 308 (1630)
T ss_pred cc--------cccccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchh-hhhccccCCceEEecc
Confidence 00 0011 1111 11223 788888888888889999999999999987 4555555555555443
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.44 E-value=8.6 Score=33.71 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=58.4
Q ss_pred EEecCCCCEEEEe-c-CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC--CeEEEEeCCC
Q 011257 239 ISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ 314 (490)
Q Consensus 239 i~~~~~~~~l~~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~ 314 (490)
.+++++++.|+-. . ...|...++.... ...+. . +... ..++|++ ..|+-...+ ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~-------~---~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFY-------D---CNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEE-------C---SCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEe-------C---CCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence 4577888888876 3 6778888876332 22221 1 1222 2356888 666655543 3566666665
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcC---CeEEEEeccCCCCceeee
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATF 379 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d---~~i~iwd~~~~~~~~~~~ 379 (490)
... ..+.. ..+ ..|+|++++|.-+++ +.|..-+++ +...+.+
T Consensus 217 ~~~-----~~Lt~--------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l 261 (302)
T 3s25_A 217 PNP-----VVLTE--------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKEL 261 (302)
T ss_dssp CCC-----EECSC--------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEE
T ss_pred CCe-----EEEeC--------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEe
Confidence 432 22222 122 337888998886533 555555555 5444444
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=88.58 E-value=12 Score=32.73 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=71.1
Q ss_pred CCCEEEEe-cC-----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC-----CeEEEEeC
Q 011257 244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (490)
Q Consensus 244 ~~~~l~~~-~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (490)
++++++.| .+ ..+.+||..+.. ...+. .+......-..+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVA----PMLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTE--EEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCe--EeECC----CCCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 56666665 22 467888887432 22211 11111111122222 45 788888765 45888898
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEc-C-----CeEEEEeccCCCCceeeeeeecccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLR 386 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (490)
.+.+- ..+..+.. ++ .....+.+ ++++++.|. + ..+.+||+.+ .+ -..+.......
T Consensus 192 ~~~~W--~~~~~~p~-----~r-------~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r 253 (308)
T 1zgk_A 192 ERNEW--RMITAMNT-----IR-------SGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET-ET-WTFVAPMKHRR 253 (308)
T ss_dssp TTTEE--EECCCCSS-----CC-------BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TE-EEECCCCSSCC
T ss_pred CCCeE--eeCCCCCC-----cc-------ccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC-Cc-EEECCCCCCCc
Confidence 77531 11111111 10 11122233 566666652 2 5788999875 32 22221110000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEeecC-----CeEEEEecCCCce
Q 011257 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSA 432 (490)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~vw~~~~~~~ 432 (490)
.. .+++.. ++++++.|+.+ ..+.+||+.+.+-
T Consensus 254 ----------~~---~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 254 ----------SA---LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ----------BS---CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ----------cc---eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 00 123332 67788888754 3577888876653
No 331
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=87.90 E-value=18 Score=33.93 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=23.3
Q ss_pred ceeEEEEeecCCCcEEEEEeCc-CeEEEEEccCCeEEEEe
Q 011257 114 KINKIRWCQSANSALYLLSTND-KTIKLWKVQEKKVKKVF 152 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~d-g~i~lwd~~~~~~~~~~ 152 (490)
....|+|.| +|.++++ ... +.|++++..+++...+.
T Consensus 28 ~P~~~a~~p--dG~l~V~-e~~gg~I~~~~~~~g~~~~~~ 64 (454)
T 1cru_A 28 KPHALLWGP--DNQIWLT-ERATGKILRVNPESGSVKTVF 64 (454)
T ss_dssp SEEEEEECT--TSCEEEE-ETTTCEEEEECTTTCCEEEEE
T ss_pred CceEEEEcC--CCcEEEE-EcCCCEEEEEECCCCcEeEEe
Confidence 367899986 5655554 455 47888887666554443
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.42 E-value=36 Score=36.94 Aligned_cols=131 Identities=8% Similarity=0.187 Sum_probs=68.8
Q ss_pred cceeEEEecCCCCEEEE-e-------cCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEc--CCCCcEEEEEeC
Q 011257 234 YHINSISNNSDGETFIS-A-------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSS 303 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~-~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~ 303 (490)
..|..-..+++.++++. | -.|.+.+|..+..... .+.||.+....+... +....+|+.+..
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ---------~iegha~~F~~~~~~~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch---------hhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence 45666677888888775 2 1477889988743322 345665554444432 222134444433
Q ss_pred ---CCeEEEEeCCCccccccccceeccccCCCcccccc--ccccceEEEEECCCCCEEEEE-cCCeEEEEeccCCCCcee
Q 011257 304 ---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT--EIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVA 377 (490)
Q Consensus 304 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~l~~sp~g~~l~sg-~d~~i~iwd~~~~~~~~~ 377 (490)
.+.++|-++.....- . ..|...... .++. .-.+-..++..|+.-..+..- ..|.|.+||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~-~--~~f~kk~~~---~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t-~~~i~ 294 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTG-N--QPFPKKAVD---VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (1630)
T ss_pred cCCCceEEEEecCCCccC-C--CCCcccccc---ccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc-chhhh
Confidence 268888888553000 0 011100000 0000 001234556777755555554 459999999998 77665
Q ss_pred eee
Q 011257 378 TFQ 380 (490)
Q Consensus 378 ~~~ 380 (490)
.-+
T Consensus 295 ~~r 297 (1630)
T 1xi4_A 295 MNR 297 (1630)
T ss_pred hcc
Confidence 444
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.56 E-value=12 Score=35.88 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred cceeEEEecCCCCEEEEe--cCCcEEEEEcCCCCceee--eeecC---CCccCCCCCceEEEEEcCCCCcEEEEEeCCCe
Q 011257 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN--IVDVK---PANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~--~d~~i~~wd~~~~~~~~~--~~~~~---~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 306 (490)
.....+.++|||++++.+ -+.++.++|++.-...+. +++.+ ..+.+ ..-.....+|.++| ....+..-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence 344568899999999886 589999999984211110 00000 00111 23446789999999 78888889999
Q ss_pred EEEEeCCC
Q 011257 307 IRLIDMRQ 314 (490)
Q Consensus 307 i~iwd~~~ 314 (490)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999875
No 334
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.52 E-value=18 Score=33.98 Aligned_cols=31 Identities=10% Similarity=0.073 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
...+.|+|.|++...|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4568999999983145556788999999754
No 335
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=81.92 E-value=25 Score=30.43 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=19.7
Q ss_pred CCcEEEEEeCc-----CeEEEEEccCCeEEEEee
Q 011257 125 NSALYLLSTND-----KTIKLWKVQEKKVKKVFD 153 (490)
Q Consensus 125 ~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~ 153 (490)
++..++.|+.+ ..+.+||+.+.+......
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 145 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD 145 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC
Confidence 35566666543 368889999888766543
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=79.46 E-value=8.2 Score=36.90 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=49.6
Q ss_pred cceEEEEECCCCCEEEEEc--CCeEEEEeccC-----CCCc---eeeeeeeccccccccccccCCCccceeeEEEcCCCC
Q 011257 342 ASISDIKFARNGRHILSRD--YMTLKLWDINM-----DSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~--d~~i~iwd~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 411 (490)
.....+.++|||+|++.+. +.++.++|+++ ..+. ...+.+.... -.+-+..+|.++|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~------------GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL------------GLGPLHTTFDGRGN 390 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC------------CSCEEEEEECSSSE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC------------CCcccEEEECCCCc
Confidence 3457789999999999864 48999999874 1111 0111111100 00124789999995
Q ss_pred EEEEeecCCeEEEEecCC
Q 011257 412 RVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 412 ~l~s~~~dg~i~vw~~~~ 429 (490)
...+---|..|.-|++..
T Consensus 391 aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEETTTTEEEEEEHHH
T ss_pred eEeeeeecceEEEEeccH
Confidence 555666899999999975
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=78.34 E-value=33 Score=29.78 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=34.6
Q ss_pred CCCEEEEe-cC-----CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCC-----CeEEEEeC
Q 011257 244 DGETFISA-DD-----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDM 312 (490)
Q Consensus 244 ~~~~l~~~-~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~ 312 (490)
++++++.| .+ ..+.+||+.+.. ...+. .+.........+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~----~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMIT----AMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECC----CCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCC----CCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 56666665 32 458888887432 22211 11111111122222 55 788888765 46889998
Q ss_pred CCcc
Q 011257 313 RQSA 316 (490)
Q Consensus 313 ~~~~ 316 (490)
.+.+
T Consensus 239 ~~~~ 242 (308)
T 1zgk_A 239 ETET 242 (308)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8753
No 338
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=78.27 E-value=60 Score=32.68 Aligned_cols=174 Identities=11% Similarity=0.012 Sum_probs=90.8
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCC-ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~ 312 (490)
..|.++.-..+|.+.+...+| +..++..+.. ..+...........-....|.++.-.+++ .+.+ |+ ++-+..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWI-AT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEE-EE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEE-Ee-CCcHhhcCc
Confidence 457888888888776655544 5666654321 11111110000001123468888888887 4443 45 456889998
Q ss_pred CCccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccC----CCCcee---eeeeeccc
Q 011257 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM----DSGPVA---TFQVHEHL 385 (490)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~----~~~~~~---~~~~~~~~ 385 (490)
.+++. ..+........ .....|.++...++|++.+....+-|.++|..+ ...... .+......
T Consensus 400 ~~~~~-----~~~~~~~~~~~-----~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 400 ATRQF-----IHYNIVDNTGT-----YNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TTTEE-----EEEEEECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CCCcE-----EEeecCCCcCC-----CCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 87643 22211000000 011458888888888766655446678888652 011111 11111110
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
. -..|.++...++|++.+.++..+-|..+|..+++.
T Consensus 470 ----~-------~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 470 ----S-------GMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp ----S-------CSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred ----c-------cceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 0 01155888888898776333334577888877654
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.89 E-value=61 Score=33.74 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=31.2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeec
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 155 (490)
.+.+++.. .+..++++-+.|+++|+|++.++++.......
T Consensus 237 ~~~~~~~~--~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEE--TTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeec--CCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 45566655 35568999999999999999999987766543
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=74.50 E-value=43 Score=29.14 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=16.2
Q ss_pred CCCcEEEEEeC-C-----CeEEEEeCCCcc
Q 011257 293 THCNMLAYSSS-K-----GSIRLIDMRQSA 316 (490)
Q Consensus 293 ~~~~~l~~~~~-d-----g~i~iwd~~~~~ 316 (490)
++ ++++.|+. + ..+.+||..+.+
T Consensus 148 ~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 148 MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 45 68888876 2 468889988753
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.28 E-value=30 Score=36.06 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=28.8
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+.+++..++..++++-+.|+++|+|++.++++
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 55778888999999999999999999999876
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=72.99 E-value=47 Score=28.92 Aligned_cols=24 Identities=0% Similarity=0.087 Sum_probs=16.2
Q ss_pred CCCCcEEEEEeC------CCeEEEEeCCCcc
Q 011257 292 PTHCNMLAYSSS------KGSIRLIDMRQSA 316 (490)
Q Consensus 292 p~~~~~l~~~~~------dg~i~iwd~~~~~ 316 (490)
.++ .+++.|+. -..+.+||+.+.+
T Consensus 157 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 157 HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp ETT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred ECC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 355 67777764 2358899988753
No 343
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=72.00 E-value=48 Score=28.61 Aligned_cols=27 Identities=4% Similarity=0.150 Sum_probs=19.6
Q ss_pred CCcEEEEEeCc------CeEEEEEccCCeEEEE
Q 011257 125 NSALYLLSTND------KTIKLWKVQEKKVKKV 151 (490)
Q Consensus 125 ~~~~l~~~~~d------g~i~lwd~~~~~~~~~ 151 (490)
++..++.|+.+ ..+.+||..+.+....
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 45677777665 4688999999877665
No 344
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=71.65 E-value=9.2 Score=34.12 Aligned_cols=112 Identities=11% Similarity=0.172 Sum_probs=62.4
Q ss_pred cEEEEEeCCCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEE---ECCCCCEEEEE--cCCeEEEEecc
Q 011257 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSR--DYMTLKLWDIN 370 (490)
Q Consensus 296 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~---~sp~g~~l~sg--~d~~i~iwd~~ 370 (490)
.+++.++.||.|.-.|..+|+..++ ++.... .++.... ...++..++.. .||.|..++..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~----~~~~~~-----------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~ 75 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWS----IEPENF-----------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH 75 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEE----ECGGGS-----------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE----ecCCcc-----------CCcEEecCCccccCCcEEEEEECCCCEEEEEECC
Confidence 4788899999999999999886543 221100 0111100 00133344342 46899888887
Q ss_pred CCCCceeeeeeeccccccccccccCCCccceeeEEEc-----------CCCCEEEEeecCCeEEEEecCCCceeeeEec
Q 011257 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-----------GDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 438 (490)
+ +.....+....... . ..+... ..+..+.+|+.+|.+...|+.+|+. +..+.
T Consensus 76 ~-G~~~~~~~~~~lv~--~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~-~W~~~ 138 (339)
T 2be1_A 76 Q-GLQKLPLSIRQLVS--T------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI-ISAFG 138 (339)
T ss_dssp T-EEEEEEEEHHHHHT--T------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE-EEEES
T ss_pred C-CcEEeeecccccee--c------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE-EEEEe
Confidence 5 53332222211110 0 001111 1456788999999999999999987 34443
No 345
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=69.50 E-value=56 Score=28.36 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=17.6
Q ss_pred CCCEEEEeecCC-----eEEEEecCCCce
Q 011257 409 DGGRVATGSYSN-----LFRVFGCSEGSA 432 (490)
Q Consensus 409 d~~~l~s~~~dg-----~i~vw~~~~~~~ 432 (490)
++++++.|+.++ .+.+||+.+.+-
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 677888887654 588899887753
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=69.08 E-value=96 Score=30.87 Aligned_cols=157 Identities=9% Similarity=0.047 Sum_probs=77.3
Q ss_pred CCCEEEEe-cC------CcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCC--eEEEEeCCC
Q 011257 244 DGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQ 314 (490)
Q Consensus 244 ~~~~l~~~-~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~ 314 (490)
++++++.| .+ ..+.+||..+.. ...+. .+...... .+++...++ .+++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~----~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIK----SLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTE--EEECC----CCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCc--EEECC----CCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 66777775 22 357788887432 22211 11111111 123332366 7888888765 689999887
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCC-CCEEEEE-c--C-----CeEEEEeccCCCCc-----eeeee
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSR-D--Y-----MTLKLWDINMDSGP-----VATFQ 380 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-g~~l~sg-~--d-----~~i~iwd~~~~~~~-----~~~~~ 380 (490)
.. +..+... + ..+.++ ....++.+..+ ++.++.| . + +.+.+||+.+ ... ...+.
T Consensus 523 ~~--W~~~~~~-g-~~p~~r-------~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~~ 590 (695)
T 2zwa_A 523 EI--FKDVTPK-D-EFFQNS-------LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKKL 590 (695)
T ss_dssp TE--EEECCCS-S-GGGGSC-------CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEEE
T ss_pred Cc--eEEccCC-C-CCCCcc-------cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEcC
Confidence 53 1111110 0 000000 12233455554 5566665 2 1 4688999986 441 22222
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEeecC--------CeEEEEecCCCce
Q 011257 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVFGCSEGSA 432 (490)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d--------g~i~vw~~~~~~~ 432 (490)
..... . ... .+++...++++++.|+.+ ..|.+||+.+.+-
T Consensus 591 ~~p~~-~---------R~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 591 QHPLF-Q---------RYG--SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp ECGGG-C---------CBS--CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CCCCC-C---------ccc--ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 11000 0 000 133444347888888743 4589999988754
No 347
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=67.07 E-value=64 Score=32.04 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=30.2
Q ss_pred ceeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeee
Q 011257 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (490)
Q Consensus 114 ~V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 154 (490)
.|.++.+ +..++++-+.|.++|+|++.++++......
T Consensus 223 ~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 356999999999999999999998877766
No 348
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.88 E-value=22 Score=37.92 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=28.2
Q ss_pred eeeEEEcCCCCEEEEeecCCeEEEEecCCCce
Q 011257 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 401 v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
+.+++..++..+|++-+.|+++|||++.++++
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCe
Confidence 34677788999999999999999999999976
No 349
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=63.95 E-value=70 Score=27.45 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCcEEEEEeCcC-----eEEEEEccCCeEEEEe
Q 011257 125 NSALYLLSTNDK-----TIKLWKVQEKKVKKVF 152 (490)
Q Consensus 125 ~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~ 152 (490)
++..++.|+.++ .+.+||+.+.+.....
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 456677776543 5778898888776653
No 350
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=63.23 E-value=82 Score=27.98 Aligned_cols=29 Identities=0% Similarity=-0.002 Sum_probs=24.1
Q ss_pred cEEEEEeCcCeEEEEEccCCeEEEEeeec
Q 011257 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (490)
Q Consensus 127 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 155 (490)
..++.++.||.|.-.|..+|+........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 47889999999999999999887766544
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=60.17 E-value=1.4e+02 Score=29.67 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=38.4
Q ss_pred CCCCEEEEe-c--CCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCC-CCcEEEEEeC--C-----CeEEEEe
Q 011257 243 SDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYSSS--K-----GSIRLID 311 (490)
Q Consensus 243 ~~~~~l~~~-~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~--d-----g~i~iwd 311 (490)
.++++++.| . ++.+.+||..+.. ...+... ..+.........+.+..+ + .+++.|+. + ..+.+||
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~-g~~p~~r~~~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd 574 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPK-DEFFQNSLVSAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFK 574 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTE--EEECCCS-SGGGGSCCBSCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCc--eEEccCC-CCCCCcccceeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEE
Confidence 477787776 3 2378899987432 2222110 001111112233555555 5 78888876 2 4588999
Q ss_pred CCCcc
Q 011257 312 MRQSA 316 (490)
Q Consensus 312 ~~~~~ 316 (490)
+.+..
T Consensus 575 ~~~~~ 579 (695)
T 2zwa_A 575 YDAEN 579 (695)
T ss_dssp ECTTC
T ss_pred ccCCc
Confidence 88764
No 352
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.27 E-value=50 Score=32.75 Aligned_cols=25 Identities=0% Similarity=-0.104 Sum_probs=22.6
Q ss_pred CCCCEEEEeecCCeEEEEecCCCce
Q 011257 408 GDGGRVATGSYSNLFRVFGCSEGSA 432 (490)
Q Consensus 408 ~d~~~l~s~~~dg~i~vw~~~~~~~ 432 (490)
.+..+|++-+.|.++|+|+++++++
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~l 253 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTL 253 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEE
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCce
Confidence 3578999999999999999999986
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.89 E-value=83 Score=33.57 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=29.9
Q ss_pred eeEEEEeecCCCcEEEEEeCcCeEEEEEccCCeEEEEeeec
Q 011257 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (490)
Q Consensus 115 V~~v~~~p~~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 155 (490)
+.+++.. .+..++++-+.|+++|+|++.++++.......
T Consensus 240 ~vs~~~~--~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 240 IISMIFL--STYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp BSCCEEE--TTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eEEeecc--CCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4444444 35568999999999999999999887766554
No 354
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.27 E-value=53 Score=31.86 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=36.6
Q ss_pred ceEEEEECCCCCEEEEEcC-------------CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcCC
Q 011257 343 SISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (490)
Q Consensus 343 ~i~~l~~sp~g~~l~sg~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 409 (490)
..-.|+|+|+|++++.-+. +.+.+.+..+ ++...-+.+..+. .++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~~~rf~~~P~ga--------------E~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-CeEEEEEeCCCCc--------------cCcCeeECCC
Confidence 4567999999996665321 2344445443 5544444444332 1568999999
Q ss_pred CCEEEEe
Q 011257 410 GGRVATG 416 (490)
Q Consensus 410 ~~~l~s~ 416 (490)
++.|++.
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9987754
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.43 E-value=78 Score=30.48 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=37.4
Q ss_pred cceEEEEECCCCCEEEEEcC-------------CeEEEEeccCCCCceeeeeeeccccccccccccCCCccceeeEEEcC
Q 011257 342 ASISDIKFARNGRHILSRDY-------------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (490)
Q Consensus 342 ~~i~~l~~sp~g~~l~sg~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (490)
.....|.|+++|.+.++.+. ..+..++..+ ++....+.+.... .++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 45678999999988774321 1455555543 4444433322211 135899999
Q ss_pred CCCEEEEee
Q 011257 409 DGGRVATGS 417 (490)
Q Consensus 409 d~~~l~s~~ 417 (490)
|++.|.++-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999887654
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.42 E-value=2.1e+02 Score=28.50 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEE-ecCCCCEEEEe-c-----CCcEEEEEcCCCC
Q 011257 237 NSIS-NNSDGETFISA-D-----DLRINLWNLEISN 265 (490)
Q Consensus 237 ~~i~-~~~~~~~l~~~-~-----d~~i~~wd~~~~~ 265 (490)
..+. ++|++++++.+ + -..++++|+.+..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~ 167 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKD 167 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCC
Confidence 3455 89999998875 2 3368999998543
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.77 E-value=1.5e+02 Score=26.72 Aligned_cols=156 Identities=10% Similarity=0.071 Sum_probs=79.1
Q ss_pred EEEEEcCCCC-ceeeeeecCCCccCCCCCceEEEEEc---CC----CCcEE-EEEeCCCeEEEEeCCCccccccccceec
Q 011257 256 INLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT----HCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (490)
Q Consensus 256 i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~---p~----~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 326 (490)
|.+||+.+.. +.++.+.+...... ....+..+++. |. + .++ ++=...+-|.++|+.+++.. +...
T Consensus 125 Lv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~-~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 125 IVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSE-TFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCS-EEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred EEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCc-cEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 4457776441 44444443322222 24567888887 32 2 333 33334778999999988643 2221
Q ss_pred cccCCCc--ccccccc----ccceEEEEECCC----CCEEEEEcCCeEEEEeccC----CCCceee--eeeecccccccc
Q 011257 327 EQEAPGT--RSFFTEI----IASISDIKFARN----GRHILSRDYMTLKLWDINM----DSGPVAT--FQVHEHLRPKLC 390 (490)
Q Consensus 327 ~~~~~~~--~~~~~~h----~~~i~~l~~sp~----g~~l~sg~d~~i~iwd~~~----~~~~~~~--~~~~~~~~~~~~ 390 (490)
....+.. .....+. ...+..++++|+ ++.|.-..-..-++|.+.+ +...... ..+..+.
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~----- 273 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGK----- 273 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCT-----
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCC-----
Confidence 1111110 0011111 247899999998 7888765322224444432 0111111 1111110
Q ss_pred ccccCCCccceeeEEEc-CCCCEEEEeecCCeEEEEecCC
Q 011257 391 DLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSE 429 (490)
Q Consensus 391 ~~~~~~~~~~v~~~~~s-~d~~~l~s~~~dg~i~vw~~~~ 429 (490)
..+-..+++. .+|.++++--..+.|..|+..+
T Consensus 274 -------~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 274 -------YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -------TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -------CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 0001245665 5777777777889999999875
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.81 E-value=96 Score=30.07 Aligned_cols=60 Identities=7% Similarity=0.146 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCC------------CeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEECC
Q 011257 284 VITSAEFHPTHCNMLAYSSSK------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (490)
Q Consensus 284 ~v~~~~~~p~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp 351 (490)
..-.|+|+|.| ++++.-..+ ..+.+.+..++++. +.+..+. ...++.++|+|
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~----rf~~~P~-----------gaE~TG~~fsp 540 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR----RFMVGPI-----------GCEVTGISFSP 540 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEE----EEEECCT-----------TCEEEEEEECT
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEE----EEEeCCC-----------CccCcCeeECC
Confidence 45789999999 665543322 23455555555431 2222221 16799999999
Q ss_pred CCCEEEEE
Q 011257 352 NGRHILSR 359 (490)
Q Consensus 352 ~g~~l~sg 359 (490)
|++.|+..
T Consensus 541 Dg~tlfvn 548 (592)
T 3zwu_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99888764
No 359
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=43.96 E-value=39 Score=21.15 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=29.7
Q ss_pred cccccccccccccccccccccccccEEEEEECCCCCEEEE
Q 011257 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLAT 52 (490)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~V~~~~~s~dg~~lat 52 (490)
....++-.++|+.... ..+.|.+.++.+.....|+++.|
T Consensus 24 ~~~~i~S~~Ll~g~~~-v~I~H~G~~Y~LR~Tr~GKLILT 62 (63)
T 2loj_A 24 AERRVNSQALLGPDGK-VIIDHNGQEYLLRKTQAGKLLLT 62 (63)
T ss_dssp CCCEEEGGGSSTTTCE-EEEEETTEEEEEEEETTTEEEEE
T ss_pred ccceEcHHHHhCCCCE-EEEEeCCeEEEeEEccCCceeec
Confidence 3346777777764333 56889999999999999988875
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=43.07 E-value=1.7e+02 Score=25.69 Aligned_cols=174 Identities=12% Similarity=0.043 Sum_probs=80.2
Q ss_pred cceeEEEEeec-CCCcEEEEEeCcCeEEEEEccCCeEEEEeeeccCCCcCCCCCCccccccccCceEEeccCCccccccc
Q 011257 113 EKINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (490)
Q Consensus 113 ~~V~~v~~~p~-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~ 191 (490)
+.|.++...+. .+..+++.++.+|.|+.-.+............ .+.+..+..... ...
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~--------------------~i~lke~D~lv~-~~~ 153 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIV--------------------AVNLRDNDELVG-AVL 153 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEE--------------------SCBCCTTCCEEE-EEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceE--------------------EEEECCCCEEEE-EEE
Confidence 44655544321 24568999999999998887653211100000 111111111111 111
Q ss_pred cCCCCccccCCCCCcEEEeeeecccccccccc---eeeeeccccccceeEEEecCCCCEEEEe-cCCcEEEEEcCCCC--
Q 011257 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAG---CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-- 265 (490)
Q Consensus 192 ~~~~~~l~~~~~~g~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~~wd~~~~~-- 265 (490)
....+.++..+..|.+..+.+. ..+.....+ -.+...-.....|.++...+++..++.. ..|.++.-.+..-.
T Consensus 154 ~~~~d~ill~T~~G~~~rf~~~-~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 232 (327)
T 3uc1_A 154 CSAGDDLLLVSANGQSIRFSAT-DEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQ 232 (327)
T ss_dssp ECTTCEEEEEETTSEEEEEECC-TTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ecCCCEEEEEECCCeEEEEECc-ccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcccc
Confidence 1223456667777776665521 001111111 1111111223456666555555566665 88888877754211
Q ss_pred ----ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 266 ----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 266 ----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
.-...+ .+....+.+..+....+. ..++..+.+|.+..++...
T Consensus 233 ~R~~~G~~~~-----~l~~~~d~lv~~~~~~~~-~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 233 GRGGKGVLTV-----MYDRRRGRLVGALIVDDD-SELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CTTSCCEESS-----CCCTTTCSEEEEEEECTT-CEEEEEEGGGCEEEEEGGG
T ss_pred CcCCCcEEEE-----EecCCCCeEEEEEEeCCC-ccEEEEcCCCeEEEEehhh
Confidence 111111 222212334444443333 4566667777776666543
No 361
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=42.95 E-value=1.7e+02 Score=25.65 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=13.8
Q ss_pred CeEEEEEccCCeEEEEee
Q 011257 136 KTIKLWKVQEKKVKKVFD 153 (490)
Q Consensus 136 g~i~lwd~~~~~~~~~~~ 153 (490)
..+.+||..+.+......
T Consensus 168 ~~v~~yd~~~~~W~~~~~ 185 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGE 185 (357)
T ss_dssp CEEEEEETTTTEEEEEEE
T ss_pred ccEEEEeCCCCcEEECCC
Confidence 478899999988776643
No 362
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=40.23 E-value=2.1e+02 Score=25.84 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=34.1
Q ss_pred eEEEec-CCCCEEEEe-cCCcEEEEEcCC-CC--ceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEe
Q 011257 237 NSISNN-SDGETFISA-DDLRINLWNLEI-SN--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (490)
Q Consensus 237 ~~i~~~-~~~~~l~~~-~d~~i~~wd~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 302 (490)
..+++. .+|.++++- ....|..|+... .- ....++.. ...-..+..+.+.+++ .+.+...
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-----d~~l~~pd~~~i~~~g-~Lwv~sn 342 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-----SSRFVFGTDISVDSKG-GLWFMSN 342 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-----CTTCCSEEEEEECTTS-CEEEEEC
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-----CCCccccCeEEECCCC-eEEEEEC
Confidence 345675 567666666 889999999874 11 12222211 1123456677777776 5545443
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=39.51 E-value=1.4e+02 Score=28.79 Aligned_cols=61 Identities=7% Similarity=0.150 Sum_probs=38.0
Q ss_pred CceEEEEEcCCCCcEEEEEeC------------CCeEEEEeCCCccccccccceeccccCCCccccccccccceEEEEEC
Q 011257 283 EVITSAEFHPTHCNMLAYSSS------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (490)
Q Consensus 283 ~~v~~~~~~p~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~s 350 (490)
.....+.|.++| .+.+.-.. ...+..++..++++. ..+.... ...++.++|+
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~----~fl~~P~-----------~aEpnGiafS 539 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIR----RFMVGPI-----------GCEVTGISFS 539 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEE----EEEECCT-----------TCEEEEEEEC
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEE----EEEeCCC-----------CccccCCEEC
Confidence 556789999998 66553221 125666666565531 1122111 1468999999
Q ss_pred CCCCEEEEE
Q 011257 351 RNGRHILSR 359 (490)
Q Consensus 351 p~g~~l~sg 359 (490)
||++.|+..
T Consensus 540 PD~ktLfV~ 548 (592)
T 4a9v_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 999998875
No 364
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=31.77 E-value=2.5e+02 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=19.1
Q ss_pred CCcEEEEEeCc-------CeEEEEEccCCeEEEEe
Q 011257 125 NSALYLLSTND-------KTIKLWKVQEKKVKKVF 152 (490)
Q Consensus 125 ~~~~l~~~~~d-------g~i~lwd~~~~~~~~~~ 152 (490)
++..++.|+.+ ..+.+||..+.+.....
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC
Confidence 45567777654 35788899888776653
No 365
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=28.06 E-value=4.6e+02 Score=26.09 Aligned_cols=191 Identities=10% Similarity=0.060 Sum_probs=92.6
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCc-cCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN-MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
.|.++....+|.+.+...+ -+.+++..+.. ..... ..... ..-....|.++....+| . |-.|+..| +.++...
T Consensus 233 ~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~-~~~~~-~~~~~~~~l~~~~i~~i~~D~~g-~-lWiGT~~G-l~~~~~~ 306 (758)
T 3ott_A 233 SIKSLALDGNGDLLAGTDN-GLYVYHNDTTP-LQHII-HDSRNIQSLTNNIIWNIFADQEH-N-IWLGTDYG-ISLSRYN 306 (758)
T ss_dssp EEEEEEECTTCCEEEEETT-EEEEECCTTSC-CEEEC-CCTTCTTSCSCSCEEEEEECTTC-C-EEEEESSS-EEEECCC
T ss_pred eEEEEEEcCCCCEEEEeCC-ceeEEecCCCc-EEEEE-cCCCCcCcCCcCeEEEEEEcCCC-C-EEEEeCCc-ccccccC
Confidence 4667777777776665543 47777765322 21111 00000 01124568899888887 4 44455566 5444322
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCC--ceeeeeeeccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG--PVATFQVHEHLRPKLCD 391 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~ 391 (490)
. . ...+....... ......|.++.-..+|.+.+...+ -+..++..+ +. ....+..... ...+
T Consensus 307 ~-~-----~~~~~~~~~~~-----~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~-~~~~~~~~~~~~~~-~~~l-- 370 (758)
T 3ott_A 307 S-A-----LQFIPISQITG-----TGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPA-GERHDAIWYRMGDK-TYPL-- 370 (758)
T ss_dssp C-------CEEEEHHHHSC-----SCCCCBEEEEEECTTCCEEEEETT-EEEEESCTT-SSCCCCEEECTTCS-SSCC--
T ss_pred C-c-----eeEEecccCCC-----CCCCceEEEEEEcCCCCEEEeeCC-cceeecccc-cccceeEEeccCCc-CCCC--
Confidence 1 1 11111000000 001146888988888887776543 456666543 21 1111211000 0000
Q ss_pred cccCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCCceeeeEecc-----CCCceEEEEEccCCC
Q 011257 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRP 454 (490)
Q Consensus 392 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~ 454 (490)
.-..|.++.-..+|++.+ |+ ++-|..|+..+++........ ....|.++...+++.
T Consensus 371 -----~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 431 (758)
T 3ott_A 371 -----SHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ 431 (758)
T ss_dssp -----SCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE
T ss_pred -----CCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC
Confidence 001255777777887655 34 457999998877542211111 123567776655554
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=27.50 E-value=3e+02 Score=23.80 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred cceeEEEEeec-CCCcEEEEEeCcCeEEEEEccC
Q 011257 113 EKINKIRWCQS-ANSALYLLSTNDKTIKLWKVQE 145 (490)
Q Consensus 113 ~~V~~v~~~p~-~~~~~l~~~~~dg~i~lwd~~~ 145 (490)
+.|.++...+. .++.+++..+..|.++.-.+..
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e 128 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTE 128 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHH
Confidence 44655543321 2455789999999999887653
No 367
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=24.52 E-value=3.2e+02 Score=23.15 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=77.7
Q ss_pred cceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 011257 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (490)
Q Consensus 234 ~~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~ 313 (490)
..|..++.......++ . +|.|+.|-.....+.-. .......|..++..... .++. . ||.+..|-..
T Consensus 102 ~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~wG~n 167 (282)
T 3qhy_B 102 SGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALAV-K-NGGVIAWGDN 167 (282)
T ss_dssp SSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECC
T ss_pred CCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEEE-E-CCEEEEecCC
Confidence 3566676655543344 4 89999998765444311 01123457777665543 3332 3 7999999876
Q ss_pred CccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccCCCCceeeeeeeccccccccccc
Q 011257 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (490)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (490)
....+..+... ...|..++...+. .++. .+|.|..|-....++.-....
T Consensus 168 ~~gqlg~p~~~----------------~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~~------------- 216 (282)
T 3qhy_B 168 YFGQTTVPAEA----------------QSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPTE------------- 216 (282)
T ss_dssp TTSTTSCCGGG----------------GSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGG-------------
T ss_pred CCCCCCCceec----------------CCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCcc-------------
Confidence 53322111000 1457777765443 3444 689999998765333210000
Q ss_pred cCCCccceeeEEEcCCCCEEEEeecCCeEEEEecCCC
Q 011257 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (490)
Q Consensus 394 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~vw~~~~~ 430 (490)
....|..++-..+. .++. . ||.|+.|-....
T Consensus 217 ---~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 217 ---ALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp ---GGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred ---cCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence 00113355544333 3333 3 899999987654
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=23.58 E-value=3.4e+02 Score=23.03 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=57.5
Q ss_pred ceeEEEecCCCCEEEEecCCcEEEEEcCCCCceeeeeecCCCccCCCCCceEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 011257 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (490)
Q Consensus 235 ~v~~i~~~~~~~~l~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~ 314 (490)
.|..++.......++ . ||.++.|-.....+.-. | ......|..++..... .++. . ||.+..|-...
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~-----p---~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTM-----P---AATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSC-----C---GGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCC-----C---ccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCC
Confidence 455666544332222 3 88888887765444311 0 0113356777766543 4444 4 89999998665
Q ss_pred ccccccccceeccccCCCccccccccccceEEEEECCCCCEEEEEcCCeEEEEeccC
Q 011257 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (490)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~g~~l~sg~d~~i~iwd~~~ 371 (490)
...+..+... ...|..|+...+...++ . +|.|..|-...
T Consensus 91 ~Gqlg~P~~~----------------~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 91 DGQTTVPAEA----------------RSGVDAIAAGAWASYAL-K-DGKVIAWGDDS 129 (282)
T ss_dssp TSTTCCCGGG----------------SSSEEEEEEETTEEEEE-E-TTEEEEEECCT
T ss_pred CCCCCCCccc----------------CCCeEEEECcCCEEEEE-e-CCeEEEecCCC
Confidence 3322111110 13577777664433333 4 89999998764
No 369
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.12 E-value=2.2e+02 Score=20.01 Aligned_cols=25 Identities=8% Similarity=0.278 Sum_probs=14.4
Q ss_pred EEEECCCCCEEEEEcCCeEEEEecc
Q 011257 346 DIKFARNGRHILSRDYMTLKLWDIN 370 (490)
Q Consensus 346 ~l~~sp~g~~l~sg~d~~i~iwd~~ 370 (490)
.+.+..+|.+++...++...+|.-.
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S~ 77 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVYP 77 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEES
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEec
Confidence 4566777777666444444466443
Done!