BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>011258
MESNLYFSQNLGFRTVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTP
RNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQ
HGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQV
RGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYG
WGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGG
AFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNG
VVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQ
LWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFG
FVPFFKPPGL

High Scoring Gene Products

Symbol, full name Information P value
VTE1
VITAMIN E DEFICIENT 1
protein from Arabidopsis thaliana 3.4e-187
VTE1
Probable tocopherol cyclase, chloroplastic
protein from Oryza sativa Japonica Group 7.5e-176

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  011258
        (490 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2125657 - symbol:VTE1 "VITAMIN E DEFICIENT 1" ...  1815  3.4e-187  1
UNIPROTKB|Q6K7V6 - symbol:VTE1 "Probable tocopherol cycla...  1708  7.5e-176  1


>TAIR|locus:2125657 [details] [associations]
            symbol:VTE1 "VITAMIN E DEFICIENT 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;ISS;IDA] [GO:0009706 "chloroplast inner membrane"
            evidence=TAS] [GO:0009976 "tocopherol cyclase activity"
            evidence=IMP;IDA] [GO:0010189 "vitamin E biosynthetic process"
            evidence=IDA] [GO:0006979 "response to oxidative stress"
            evidence=IEP] [GO:0009644 "response to high light intensity"
            evidence=IEP] [GO:0006631 "fatty acid metabolic process"
            evidence=IGI] [GO:0015994 "chlorophyll metabolic process"
            evidence=IGI] [GO:0016122 "xanthophyll metabolic process"
            evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009266
            "response to temperature stimulus" evidence=IMP] [GO:0009915
            "phloem sucrose loading" evidence=IMP] [GO:0031347 "regulation of
            defense response" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0010264 "myo-inositol hexakisphosphate biosynthetic process"
            evidence=RCA] InterPro:IPR025893 Pfam:PF14249 UniPathway:UPA00160
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006979 GO:GO:0006631
            GO:GO:0009706 GO:GO:0009644 EMBL:AL022537 GO:GO:0009534
            GO:GO:0010287 GO:GO:0009266 EMBL:AL161582 GO:GO:0009915
            GO:GO:0031347 GO:GO:0010189 GO:GO:0015994 EMBL:AF302188
            IPI:IPI00540321 RefSeq:NP_567906.1 UniGene:At.22259 STRING:Q94FY7
            PaxDb:Q94FY7 PRIDE:Q94FY7 EnsemblPlants:AT4G32770.1 GeneID:829413
            KEGG:ath:AT4G32770 TAIR:At4g32770 eggNOG:NOG05806
            HOGENOM:HOG000005813 InParanoid:Q94FY7 KO:K09834 OMA:PHSGYHW
            PhylomeDB:Q94FY7 ProtClustDB:PLN02818 Genevestigator:Q94FY7
            GermOnline:AT4G32770 GO:GO:0009976 GO:GO:0016122 Uniprot:Q94FY7
        Length = 488

 Score = 1815 (644.0 bits), Expect = 3.4e-187, P = 3.4e-187
 Identities = 330/482 (68%), Positives = 384/482 (79%)

Query:    14 RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
             R V     +L P   TK   R  +RV    S+  +    +SV PVY PT  NRELRTPHS
Sbjct:    21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80

Query:    71 GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
             GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG 
Sbjct:    81 GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140

Query:   131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGF 190
             QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+           
Sbjct:   141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPE----------- 189

Query:   191 SWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNS 250
                EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ S
Sbjct:   190 ---EFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKS 246

Query:   251 TAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQ 310
             TAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQ
Sbjct:   247 TAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQ 306

Query:   311 CNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQW 369
             CNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S W
Sbjct:   307 CNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPW 366

Query:   370 GYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGT 429
             GYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+
Sbjct:   367 GYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGS 426

Query:   430 KGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPP 488
             KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L VP+D++   G VPFFKPP
Sbjct:   427 KGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPP 486

Query:   489 GL 490
             GL
Sbjct:   487 GL 488


>UNIPROTKB|Q6K7V6 [details] [associations]
            symbol:VTE1 "Probable tocopherol cyclase, chloroplastic"
            species:39947 "Oryza sativa Japonica Group" [GO:0006979 "response
            to oxidative stress" evidence=IMP] [GO:0009651 "response to salt
            stress" evidence=IMP] InterPro:IPR025893 Pfam:PF14249
            UniPathway:UPA00160 GO:GO:0006979 GO:GO:0009651 GO:GO:0006631
            GO:GO:0009644 GO:GO:0010287 EMBL:AP008208 EMBL:CM000139
            GO:GO:0009266 GO:GO:0009915 GO:GO:0031347 GO:GO:0010189
            GO:GO:0015994 eggNOG:NOG05806 HOGENOM:HOG000005813 KO:K09834
            OMA:PHSGYHW ProtClustDB:PLN02818 GO:GO:0009976 GO:GO:0016122
            EMBL:AP004770 EMBL:AP005536 EMBL:AK072052 RefSeq:NP_001046545.1
            UniGene:Os.18701 STRING:Q6K7V6 PRIDE:Q6K7V6
            EnsemblPlants:LOC_Os02g17650.1 GeneID:4329007 KEGG:osa:4329007
            Gramene:Q6K7V6 Uniprot:Q6K7V6
        Length = 470

 Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
 Identities = 308/477 (64%), Positives = 365/477 (76%)

Query:    16 VEHPDSTLRPLLYTKRRHFNRVLV--LASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYH 73
             V  P     P     RRH  R L    ASS+ +       PVY PTPR+R LRTPHSGYH
Sbjct:    10 VSFPRPAPPPRRCAPRRH-RRALAPRAASSSPSPSTAVAAPVYAPTPRDRALRTPHSGYH 68

Query:    74 FDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQIL 133
             +DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   HG RFTGVG QIL
Sbjct:    69 YDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDRVIHGSRFTGVGAQIL 128

Query:   134 GADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQ 193
             GADDKY+C ++E+S+NFWGSRHELMLGNTF  + GS PP  EVPPQ              
Sbjct:   129 GADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPEGEVPPQ-------------- 174

Query:   194 EFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAG 253
             EF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARWEYSTRPVYGWG+V SKQ STAG
Sbjct:   175 EFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAG 234

Query:   254 WLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNV 313
             WLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++APSYSEKNWG  FPRKW+WVQCNV
Sbjct:   235 WLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNV 294

Query:   314 FEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWY 373
             F GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G  YEFVPW G VSW+I+ WG+W 
Sbjct:   295 FSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWK 354

Query:   374 FAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKM 433
              + EN+ H+VE++ATTK PGT LRAPT EAGL PACKDTC+G+L LQ+WE+R DG KGKM
Sbjct:   355 LSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKM 414

Query:   434 ILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
             ILD TS+MAALEVGGGPWFN WK  T + E++   +   VDV+ LF  +PF KPPGL
Sbjct:   415 ILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQVDVESLFP-IPFLKPPGL 470


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.454    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      490       490   0.00082  119 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  633 (67 KB)
  Total size of DFA:  366 KB (2177 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.92u 0.09s 38.01t   Elapsed:  00:00:03
  Total cpu time:  37.92u 0.09s 38.01t   Elapsed:  00:00:03
  Start:  Tue May 21 04:35:58 2013   End:  Tue May 21 04:36:01 2013

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