BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011258
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1
PE=1 SV=1
Length = 488
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/482 (68%), Positives = 384/482 (79%), Gaps = 19/482 (3%)
Query: 14 RTVEHPDSTLRPLLYTKR--RHFNRVLVLASSAQT-VGGVSVNPVYKPTPRNRELRTPHS 70
R V +L P TK R +RV S+ + +SV PVY PT NRELRTPHS
Sbjct: 21 RPVSPLTRSLVPFRSTKLVPRSISRVSASISTPNSETDKISVKPVYVPTSPNRELRTPHS 80
Query: 71 GYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGV 130
GYHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG
Sbjct: 81 GYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGA 140
Query: 131 QILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGF 190
QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A G++ P KEVPP+
Sbjct: 141 QILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPE----------- 189
Query: 191 SWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNS 250
EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ S
Sbjct: 190 ---EFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKS 246
Query: 251 TAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQ 310
TAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAPSYSEKNWGG FPRKWFWVQ
Sbjct: 247 TAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQ 306
Query: 311 CNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQW 369
CNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG +YEFVPWNGVV WE+S W
Sbjct: 307 CNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPW 366
Query: 370 GYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGT 429
GYWY AEN+ H+VEL+A T GT LRAPT+E GLA AC+D+C+GEL LQ+WER YDG+
Sbjct: 367 GYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGS 426
Query: 430 KGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTLNVPVDVDGLFGFVPFFKPP 488
KGK+IL+ S MAA+E+GGGPWF TWK T+ TPELL++ L VP+D++ G VPFFKPP
Sbjct: 427 KGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPP 486
Query: 489 GL 490
GL
Sbjct: 487 GL 488
>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp.
japonica GN=VTE1 PE=2 SV=1
Length = 470
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/437 (67%), Positives = 352/437 (80%), Gaps = 15/437 (3%)
Query: 54 PVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKL 113
PVY PTPR+R LRTPHSGYH+DG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+ +
Sbjct: 49 PVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGM 108
Query: 114 SSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPT 173
S L+ HG RFTGVG QILGADDKY+C ++E+S+NFWGSRHELMLGNTF + GS PP
Sbjct: 109 SDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPE 168
Query: 174 KEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEY 233
EVPPQ EF+ RVLEGFQVTP+WHQG I DDGR+ + V++ARWEY
Sbjct: 169 GEVPPQ--------------EFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEY 214
Query: 234 STRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSY 293
STRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++APSY
Sbjct: 215 STRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSY 274
Query: 294 SEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILY 353
SEKNWG FPRKW+WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G Y
Sbjct: 275 SEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGKFY 334
Query: 354 EFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTC 413
EFVPW G VSW+I+ WG+W + EN+ H+VE++ATTK PGT LRAPT EAGL PACKDTC
Sbjct: 335 EFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTC 394
Query: 414 FGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNVPV 473
+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPWFN WK T + E++ + V
Sbjct: 395 YGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQV 454
Query: 474 DVDGLFGFVPFFKPPGL 490
DV+ LF +PF KPPGL
Sbjct: 455 DVESLFP-IPFLKPPGL 470
>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2
SV=1
Length = 474
Score = 629 bits (1621), Expect = e-179, Method: Compositional matrix adjust.
Identities = 300/470 (63%), Positives = 366/470 (77%), Gaps = 20/470 (4%)
Query: 26 LLYTKRRHFNRVLVLASSAQTVGG-----VSVNPVYKPTPRNRELRTPHSGYHFDGSTRR 80
L + RRH R +V +++ +V + P+Y PTP++R LRTPHSGYHFDG+ R
Sbjct: 20 LPRSSRRHCPRGVVPRAASSSVSSFTSPSAAAAPIYTPTPQDRSLRTPHSGYHFDGTARP 79
Query: 81 FFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYM 140
FFEGWYF+VSIPE +QSFC +YSVENP F+ +S L+ + PRFTGVG QILGADDKY+
Sbjct: 80 FFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYI 139
Query: 141 CHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVL 200
C +SE+S+NFWGSRHELMLGNTF ++K S PP EVPPQ +F+RRVL
Sbjct: 140 CQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQ--------------DFSRRVL 185
Query: 201 EGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPV 260
EG QVTP+WHQG I DDGR+N+ V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP
Sbjct: 186 EGLQVTPIWHQGFIRDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPF 245
Query: 261 FEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGE 320
FEPHWQICMA GLSTGWIEWDGERFEF++APSYSEKNWGG FPRKW+W+QCNVF GA+GE
Sbjct: 246 FEPHWQICMARGLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGE 305
Query: 321 VALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQT 380
V+LTA GGLR++ + D++E+ ++IGIHY+G +EFVPW G VSW+I WG W + EN+T
Sbjct: 306 VSLTAAGGLRKIGLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKT 365
Query: 381 HMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSD 440
H+VE++ATT GT LRAPT EAGL PACKDTC+G+L LQLWE++YDG+KG+MILD TS+
Sbjct: 366 HLVEIEATTAESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSN 425
Query: 441 MAALEVGGGPWFNTWKAKTATPELLRRTLNVPVDVDGLFGFVPFFKPPGL 490
MAALEVGGGPWFN WK T E++ + PVDV+ L +PF KPPGL
Sbjct: 426 MAALEVGGGPWFNGWKGTTVVNEVVNNIVGTPVDVESLLP-IPFLKPPGL 474
>sp|A8IAN5|RPOA_AZOC5 DNA-directed RNA polymerase subunit alpha OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=rpoA PE=3 SV=1
Length = 341
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 299 GGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPW 358
GA P++ V E G +T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 22 AGADPKRLATVVAEPLERGFG---MTLGNSLRRI-LLSSLQGAAVTSVHIDGVLHEFSSI 77
Query: 359 NGV 361
GV
Sbjct: 78 PGV 80
>sp|A7IPP6|RPOA_XANP2 DNA-directed RNA polymerase subunit alpha OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpoA PE=3
SV=1
Length = 338
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 300 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 359
G P+++ V E G +T G LR++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GHDPKRFATVIAEPLERGFG---MTLGNALRRI-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 360 GV 361
GV
Sbjct: 76 GV 77
>sp|B8EIT5|RPOA_METSB DNA-directed RNA polymerase subunit alpha OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=rpoA PE=3 SV=1
Length = 338
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 300 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 359
G P+++ + E G LT G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 20 GDDPKRFATIVAGPLELGFG---LTLGNSLRRI-LLSSLQGAAITSVHIDGVLHEFSSIP 75
Query: 360 GV 361
GV
Sbjct: 76 GV 77
>sp|B6IRT0|RPOA_RHOCS DNA-directed RNA polymerase subunit alpha OS=Rhodospirillum
centenum (strain ATCC 51521 / SW) GN=rpoA PE=3 SV=1
Length = 338
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 300 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 359
G+ P++ + E G LT G +R++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GSDPKREATIVAGPLERGFG---LTLGNAIRRV-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 360 GV 361
GV
Sbjct: 76 GV 77
>sp|B2IF96|RPOA_BEII9 DNA-directed RNA polymerase subunit alpha OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=rpoA PE=3 SV=1
Length = 338
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 323 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 361
LT G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 40 LTLGNALRRI-LLSSLQGAAITSVHIDGVLHEFSSIPGV 77
>sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha OS=Maricaulis maris
(strain MCS10) GN=rpoA PE=3 SV=1
Length = 339
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 323 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 361
+T G LR++ +L S + AA+ +H DG+++EF +GV
Sbjct: 40 MTLGNALRRV-LLSSLQGAAVTNVHIDGVVHEFSSIDGV 77
>sp|Q89JA7|RPOA_BRAJA DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rpoA PE=3 SV=1
Length = 343
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 300 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 359
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 25 GSDPARFATIVAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 80
Query: 360 GV 361
GV
Sbjct: 81 GV 82
>sp|Q4FLP1|RPOA_PELUB DNA-directed RNA polymerase subunit alpha OS=Pelagibacter ubique
(strain HTCC1062) GN=rpoA PE=3 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 323 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 361
LT G LR++ +L S AA+ I DG+L+EF GV
Sbjct: 44 LTLGNSLRRI-LLSSIRGAAVTSIQIDGVLHEFTSIKGV 81
>sp|Q0BYD8|RPOA_HYPNA DNA-directed RNA polymerase subunit alpha OS=Hyphomonas neptunium
(strain ATCC 15444) GN=rpoA PE=3 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 324 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 361
T G LR++ +L S + AA+IG+ DG+++EF GV
Sbjct: 44 TLGNALRRV-LLSSLQGAAIIGVQIDGVVHEFSAIPGV 80
>sp|B8IT35|RPOA_METNO DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 300 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 359
G P++ V E G T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GHDPKRIATVVAEPLERGFGT---TLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIP 76
Query: 360 GV 361
GV
Sbjct: 77 GV 78
>sp|B0UHU5|RPOA_METS4 DNA-directed RNA polymerase subunit alpha OS=Methylobacterium sp.
(strain 4-46) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 324 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 361
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIPGV 78
>sp|Q5GSW7|RPOA_WOLTR DNA-directed RNA polymerase subunit alpha OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=rpoA PE=3 SV=1
Length = 355
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 313 VFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 361
V E ALT G LR++ +L S +A+ GI DGI +EF GV
Sbjct: 36 VLEPLESGFALTLGNALRRV-MLSSLIGSAVYGIKIDGITHEFTSIQGV 83
>sp|Q9RBW3|HPAB1_PSESH Effector protein hopAB1 OS=Pseudomonas syringae pv. phaseolicola
GN=hopAB1 PE=2 SV=1
Length = 539
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 445 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 496
>sp|Q48B61|HPAB1_PSE14 Effector protein hopAB1 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=hopAB1 PE=1 SV=1
Length = 539
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 445 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 496
>sp|Q8RK09|HPAB1_PSESS Effector protein hopAB1 OS=Pseudomonas syringae pv. savastanoi
GN=hopAB1 PE=3 SV=1
Length = 541
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 447 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 498
>sp|Q8RK12|HPAB1_PSESG Effector protein hopAB1 OS=Pseudomonas syringae pv. glycinea
GN=hopAB1 PE=3 SV=1
Length = 523
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 8 SQNLGFR-TVEHPDSTLRPLLYTKRRHFNRVLVLASSAQTVGGVSVNPVYKPTPRNREL 65
S+ LGFR +HPD+ L F L L++ Q V G++VNP KP P ++E+
Sbjct: 429 SEELGFRDAADHPDNATSCL-------FGEELSLSNPDQQVIGLAVNPTDKPQPYSQEV 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,732,632
Number of Sequences: 539616
Number of extensions: 9154832
Number of successful extensions: 15953
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 15942
Number of HSP's gapped (non-prelim): 20
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)