Query 011258
Match_columns 490
No_of_seqs 148 out of 178
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ich_A Putative ATTH; structur 97.0 0.056 1.9E-06 55.1 20.5 57 267-326 165-225 (335)
2 1nvp_C Transcription initiatio 11.3 1.3E+02 0.0044 24.4 2.3 21 275-295 55-75 (76)
3 2vgp_C Inner centromere protei 10.2 57 0.0019 23.7 -0.1 29 454-482 3-31 (43)
4 1nh2_C Transcription initiatio 9.9 1.5E+02 0.0053 24.1 2.3 21 275-295 57-77 (79)
5 3ie4_A GRAM-negative binding p 6.9 9.2E+02 0.032 20.2 6.1 22 87-108 16-39 (107)
6 1h8g_A Major autolysin; cholin 5.3 4.6E+02 0.016 21.0 3.2 25 274-298 35-59 (95)
7 3e2u_E CAP-Gly domain-containi 5.0 1.6E+02 0.0054 21.3 0.1 17 67-83 7-24 (42)
8 2di7_A BK158_1; beta-sandwich, 4.5 3.2E+02 0.011 23.5 1.8 20 128-147 73-94 (124)
9 2pzo_E CAP-Gly domain-containi 4.5 1.9E+02 0.0065 20.9 0.2 16 66-81 6-22 (42)
10 2y5p_A Internalin B, INLB; pro 4.3 2.6E+02 0.0089 21.7 1.0 9 81-89 38-46 (74)
No 1
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=97.03 E-value=0.056 Score=55.08 Aligned_cols=57 Identities=14% Similarity=0.402 Sum_probs=43.6
Q ss_pred EEecCcceEEEEEECCEEEEEcCCcccccCCCCCCCCC----CcEEEEeccCCCCCcceEEEEc
Q 011258 267 ICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR----KWFWVQCNVFEGATGEVALTAG 326 (490)
Q Consensus 267 V~m~h~lasG~I~~NGk~~dF~~g~GYiEKNWG~SFP~----~w~W~Qcn~Fd~~~~s~sLt~A 326 (490)
.+..+-.++|+|+++|+.+.++ |.+..+|.||+++.. .|=|...+ +++... +|+..-
T Consensus 165 yS~P~l~v~Gtl~~~G~~~~V~-G~aW~DrEWss~~l~~~q~GWDWf~l~-Lddg~~-Lm~~~l 225 (335)
T 2ich_A 165 YSEPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGSA-LMAFQI 225 (335)
T ss_dssp EEEEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSCE-EEEEEE
T ss_pred EecccEEEEEEEEECCEEEEEE-ecEEEcccCcCccCCCCCCceEEEEEE-cCCCCc-EEEEEE
Confidence 3444445699999999999997 789999999998866 78898777 444433 777543
No 2
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=11.28 E-value=1.3e+02 Score=24.37 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.9
Q ss_pred EEEEEECCEEEEEcCCccccc
Q 011258 275 TGWIEWDGERFEFQDAPSYSE 295 (490)
Q Consensus 275 sG~I~~NGk~~dF~~g~GYiE 295 (490)
.|-+.+||+.|-|..+.|-.|
T Consensus 55 dGim~ingkdy~F~ka~GE~e 75 (76)
T 1nvp_C 55 DGIMNLNGRDYIFSKAIGDAE 75 (76)
T ss_dssp EEEEEETTEEEEEEEEEEEEE
T ss_pred ccEEEECCEEEEEeccceeec
Confidence 788999999999998877543
No 3
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=10.17 E-value=57 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.653 Sum_probs=19.6
Q ss_pred cccccccchHHHhhhcccceecccccCCC
Q 011258 454 TWKAKTATPELLRRTLNVPVDVDGLFGFV 482 (490)
Q Consensus 454 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (490)
.|-......+.|++-.--|.|+|.||+.+
T Consensus 3 ~WA~~~~L~~~l~~Q~~~p~D~d~iFG~I 31 (43)
T 2vgp_C 3 AWASGNLLTQAIRQQYYKPIDVDRMYGTI 31 (43)
T ss_dssp GGGSHHHHHHHHHHHHHSCCCHHHHTTTS
T ss_pred cccchHHHHHHHHHHHccCCCHHHHcCCC
Confidence 35555566666666543467999999974
No 4
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=9.89 E-value=1.5e+02 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.9
Q ss_pred EEEEEECCEEEEEcCCccccc
Q 011258 275 TGWIEWDGERFEFQDAPSYSE 295 (490)
Q Consensus 275 sG~I~~NGk~~dF~~g~GYiE 295 (490)
.|-+.+||+.|-|..+.|-.|
T Consensus 57 dGi~~ingkDy~F~ka~GE~e 77 (79)
T 1nh2_C 57 DGVVTINRNDYTFQKAQVEAE 77 (79)
T ss_dssp EEEEEETTEEEEEEEEEEEEE
T ss_pred eeEEEECCEEEEEecccEEEE
Confidence 788999999999998877543
No 5
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=6.89 E-value=9.2e+02 Score=20.18 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=17.0
Q ss_pred EEEecCCCC--eEEEEEEEeecCC
Q 011258 87 FRVSIPERK--QSFCIIYSVENPA 108 (490)
Q Consensus 87 fK~~~p~~~--~sfa~iysI~~p~ 108 (490)
||+.+|+.+ +.|||.+.|..+.
T Consensus 16 ~rvsipD~pgi~lf~fh~~iN~~~ 39 (107)
T 3ie4_A 16 FEVSIPDEEGITLFAFHGKLNEEM 39 (107)
T ss_dssp EEEEEECCTTEEEEEEEEEESSCC
T ss_pred EEEEEcCCCCCEEEEEEEEeCCCC
Confidence 678888755 7899999987554
No 6
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=5.29 E-value=4.6e+02 Score=21.02 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=15.4
Q ss_pred eEEEEEECCEEEEEcCCcccccCCC
Q 011258 274 STGWIEWDGERFEFQDAPSYSEKNW 298 (490)
Q Consensus 274 asG~I~~NGk~~dF~~g~GYiEKNW 298 (490)
++|++.+||+-|=|+...|.+-+||
T Consensus 35 ~tGW~~~~g~wYY~~~~~G~m~~~~ 59 (95)
T 1h8g_A 35 KTGWVKYKDTWYYLDAKEGAMVSNA 59 (95)
T ss_dssp CCEEEEETTEEEEECTTTCCBCCSE
T ss_pred ecCEEEECCeEEeEcCCCCcEEeCE
Confidence 3677777777776664455555553
No 7
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=4.99 E-value=1.6e+02 Score=21.31 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=2.5
Q ss_pred CCCcccccC-CCCCCcee
Q 011258 67 TPHSGYHFD-GSTRRFFE 83 (490)
Q Consensus 67 tPhsgyh~~-g~~~~fFE 83 (490)
.|||-+|+. ++.|+|=|
T Consensus 7 pP~s~~h~~~~~eRpYCe 24 (42)
T 3e2u_E 7 PPHSTHHGSRGEERPYCE 24 (42)
T ss_dssp -------------CCEET
T ss_pred CCcccccCCCcccCcccc
Confidence 589999984 44555543
No 8
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=4.50 E-value=3.2e+02 Score=23.48 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=15.4
Q ss_pred ceEEEEecCC-eEEEEc-Cccc
Q 011258 128 VGVQILGADD-KYMCHY-SEES 147 (490)
Q Consensus 128 ~~iQVl~~~~-~y~~~~-~~~~ 147 (490)
+++||++..| +|.++| .++.
T Consensus 73 i~~~v~Dn~DGsy~v~Yr~~~~ 94 (124)
T 2di7_A 73 VGVQVLDRKDGSFIVRYRMYAS 94 (124)
T ss_dssp CCCEEECCSSSCCEEECCCCSC
T ss_pred eeeEEEECCCCeEEEEEECCCC
Confidence 3489996655 999999 6665
No 9
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=4.47 E-value=1.9e+02 Score=20.88 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=0.9
Q ss_pred cCCCcccccCCC-CCCc
Q 011258 66 RTPHSGYHFDGS-TRRF 81 (490)
Q Consensus 66 ~tPhsgyh~~g~-~~~f 81 (490)
-.|||-|||... .|+|
T Consensus 6 ~pphS~~Hg~~~~eRpY 22 (42)
T 2pzo_E 6 DPPHSTHHGSRGEERPY 22 (42)
T ss_dssp ---------------CE
T ss_pred CCCcccccCCCccCCcc
Confidence 469999998644 4444
No 10
>2y5p_A Internalin B, INLB; protein binding, virulence factor, pathogenicity factor, BET fold; 1.30A {Listeria monocytogenes}
Probab=4.35 E-value=2.6e+02 Score=21.67 Aligned_cols=9 Identities=44% Similarity=1.235 Sum_probs=7.2
Q ss_pred ceeeEEEEE
Q 011258 81 FFEGWYFRV 89 (490)
Q Consensus 81 fFEGWYfK~ 89 (490)
-|.|||-..
T Consensus 38 tF~GWyt~~ 46 (74)
T 2y5p_A 38 VFKGWYTEK 46 (74)
T ss_dssp EEEEEESSS
T ss_pred EEeeeeecC
Confidence 599999763
Done!