Query 011259
Match_columns 490
No_of_seqs 131 out of 874
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 4E-144 8E-149 1142.4 32.5 468 16-489 45-514 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 8E-139 2E-143 1143.4 43.0 461 19-489 1-465 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 2.9E-91 6.3E-96 774.3 38.1 437 25-489 1-449 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 1.9E-86 4.1E-91 732.8 28.0 418 41-489 1-429 (624)
5 TIGR00733 putative oligopeptid 100.0 1.4E-29 3E-34 277.1 26.7 357 42-489 2-377 (591)
6 COG1297 Predicted membrane pro 99.8 3.3E-17 7.2E-22 174.6 19.6 227 38-310 11-241 (624)
7 PF03169 OPT: OPT oligopeptide 76.8 62 0.0014 36.5 15.1 73 152-228 465-547 (624)
8 PF13829 DUF4191: Domain of un 40.3 90 0.002 31.0 6.8 58 387-461 10-67 (224)
9 TIGR02106 cyd_oper_ybgT cyd op 38.2 36 0.00078 23.2 2.5 18 46-63 5-22 (30)
10 PF03606 DcuC: C4-dicarboxylat 37.3 75 0.0016 34.7 6.4 57 416-475 251-307 (465)
11 PF08173 YbgT_YccB: Membrane b 36.9 43 0.00092 22.5 2.7 18 46-63 5-22 (28)
12 PRK10983 putative inner membra 36.4 88 0.0019 33.1 6.6 18 379-396 173-190 (368)
13 PHA02957 hypothetical protein; 36.3 26 0.00057 32.5 2.2 44 2-49 40-92 (206)
14 PRK14749 hypothetical protein; 35.9 41 0.0009 22.8 2.5 18 46-63 5-22 (30)
15 KOG0754 Mitochondrial oxodicar 29.3 31 0.00067 34.8 1.6 42 23-66 184-225 (294)
16 COG0628 yhhT Predicted permeas 29.0 81 0.0018 32.8 4.8 86 375-463 163-249 (355)
17 TIGR03141 cytochro_ccmD heme e 28.9 1.7E+02 0.0037 21.4 5.2 31 366-397 10-40 (45)
18 PF05915 DUF872: Eukaryotic pr 26.6 1.2E+02 0.0025 27.0 4.6 17 43-59 40-56 (115)
19 PF11292 DUF3093: Protein of u 24.6 1.5E+02 0.0033 27.4 5.1 18 416-433 9-26 (143)
20 COG4890 Predicted outer membra 21.3 1.1E+02 0.0024 21.5 2.7 18 46-63 5-22 (37)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-144 Score=1142.41 Aligned_cols=468 Identities=59% Similarity=1.109 Sum_probs=458.8
Q ss_pred CCCCCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHhHHHHHHhhcCC
Q 011259 16 DSTEERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPN 95 (490)
Q Consensus 16 ~~~~~~spy~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~ 95 (490)
++++|||||||||++||++|||++|++|||+|++|++.|++++++||||++|+++++++.+++|+++||+||+|+|+||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccce-eccceeccCCCCCCcccceeeEeecccccccccccchhhhHHHHHHHHhcCCCcHHHHHHHHHHHhhhhHHHHhh
Q 011259 96 KEFQ-VLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGM 174 (490)
Q Consensus 96 ~~~~-~~~~~~~LNPGpF~~KEh~li~imA~~a~~~~~~~~~a~~~i~~~~~fy~~~~~~~~~il~~ls~q~lG~g~Agl 174 (490)
|+++ .++|+|+|||||||.|||++|+|+||++ ++.+|++++|.+|++||++++++++++++++++|++|||+||+
T Consensus 125 ~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl 200 (761)
T KOG2262|consen 125 WKFGLGGRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGL 200 (761)
T ss_pred eeeecCcceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhh
Confidence 9999 4679999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred cccceeccCCccCCchHHHHHHHHHhcccCCccc-ccchHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhcccCccce
Q 011259 175 LRRYLVDPVEMWWPSNLAQVSLFRALHEKESKSK-GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITA 253 (490)
Q Consensus 175 lR~~lV~p~~~iwPs~l~t~~l~~sLH~~~~~~~-~~sr~kfF~~~f~~~fv~~~~P~yifp~Ls~~~~~cwi~p~n~~~ 253 (490)
+||++|+|.+|.||++|++++|+|+||+++++++ +++|+|||.++|++||+|||+|+|+||+|+++||.||+.|+|.++
T Consensus 201 ~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~ 280 (761)
T KOG2262|consen 201 FRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITA 280 (761)
T ss_pred hHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHH
Confidence 9999999999999999999999999999988776 699999999999999999999999999999999999999999999
Q ss_pred eeecccccccccccceecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCcccccCCCC
Q 011259 254 QQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGH 333 (490)
Q Consensus 254 ~~i~Gg~~GlGl~~~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~ii~P~lyy~~n~w~~~~lPi~S~~~fd~~G~ 333 (490)
+|||||.+|||++|+||||++|++|+||||.+|+++.+|.++|+++.++|+.|++|| +|.|+++++||.|+++||++|+
T Consensus 281 ~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~-~n~~~a~~fPI~Ss~lf~~tG~ 359 (761)
T KOG2262|consen 281 NQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYW-TNTYDAKYFPIFSSSLFDHTGN 359 (761)
T ss_pred HHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhh-ccceecceeceecCcceecCCc
Confidence 999999999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred ceeceeecCCCCCCCHhHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHhhhcCCCCcccccccCC
Q 011259 334 KYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSY 413 (490)
Q Consensus 334 ~Yn~s~il~~~~~ld~~~y~~ysp~yl~~~~~l~~~~~fa~~~a~i~~~~L~~~~~i~~~~~~~~~~~~~D~h~~lm~~Y 413 (490)
+||++||+|+|+++|.+|||+|||+||++.++++||++||+++|+++|++|+|+||||++.|++ .++++|+|.|+||||
T Consensus 360 sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~-~~k~~DiHtrlMkkY 438 (761)
T KOG2262|consen 360 SYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA-FNKKMDIHTRLMKKY 438 (761)
T ss_pred EeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc-cccCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999988 477899999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhcccCCccccHHHHHHHHHHHHHHHHhhhheeeecCCCCchhHHHHHHHHhhc
Q 011259 414 KQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGWLV 489 (490)
Q Consensus 414 ~evP~WWy~~~~v~s~~l~i~~~~~~~~~~~lP~w~~~lal~l~~v~~~p~g~i~a~tg~~~~ln~~~eli~G~~~ 489 (490)
||||+|||++++++++++++++|+.|+++.|+|||++++|+++++++.+|+|+|+|+|||+++||+++|+|+||++
T Consensus 439 KeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~ 514 (761)
T KOG2262|consen 439 KEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIY 514 (761)
T ss_pred ccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999889999999999999999999999999999999999999999999985
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=8.2e-139 Score=1143.42 Aligned_cols=461 Identities=35% Similarity=0.717 Sum_probs=447.7
Q ss_pred CCCCchhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHhHHHHHHhhcCCccc
Q 011259 19 EERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEF 98 (490)
Q Consensus 19 ~~~spy~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~ 98 (490)
||||||||||++||++|||++|++|||+|++|++++++++++||+|++|+|+++++++++||++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceeccCCCCCCcccceeeEeecccccccccccchhhhHHHHHHHHhcCCCcHHHHHHHHHHHhhhhHHHHhhcccc
Q 011259 99 QVLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRY 178 (490)
Q Consensus 99 ~~~~~~~~LNPGpF~~KEh~li~imA~~a~~~~~~~~~a~~~i~~~~~fy~~~~~~~~~il~~ls~q~lG~g~AgllR~~ 178 (490)
+++|++|+|||||||+|||++||+|||++ .+.+|+++++.+|++||+++++++++|++++++|++|+|+||++||+
T Consensus 81 ~~~g~~~~lNPGPF~~KEh~liti~a~~~----~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~ 156 (681)
T TIGR00727 81 TIRGRKYNIIPGPFNVKEHMFITLMYAVS----FGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRF 156 (681)
T ss_pred ccccceeccCCCCCChhcceeeeeeeehh----ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 99999999999999999999999999999 78899999999999999999999999999999999999999999999
Q ss_pred eeccCCccCCchHHHHHHHHHhcccCCccc---ccchHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhcccCccceee
Q 011259 179 LVDPVEMWWPSNLAQVSLFRALHEKESKSK---GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQ 255 (490)
Q Consensus 179 lV~p~~~iwPs~l~t~~l~~sLH~~~~~~~---~~sr~kfF~~~f~~~fv~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~ 255 (490)
+|+|++|+||++|+|++|+|+||+++++.. ++||+|+|+++|+++|+|+|+|+|+||+||+|||+|||+|+|+++++
T Consensus 157 lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~ 236 (681)
T TIGR00727 157 VVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQ 236 (681)
T ss_pred EeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhh
Confidence 999999999999999999999998654332 48999999999999999999999999999999999999999999999
Q ss_pred eccccccccccc-ceecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCcccccCCCCc
Q 011259 256 IGSGYHGLGIGA-FTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHK 334 (490)
Q Consensus 256 i~Gg~~GlGl~~-~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~ii~P~lyy~~n~w~~~~lPi~S~~~fd~~G~~ 334 (490)
+|||.+|||++| +|||||+|++++|+||++|+++++|+++|++++++++.|++|| +|.|+++|+|++|+++|||+|++
T Consensus 237 i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~ 315 (681)
T TIGR00727 237 IFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYY-SNTWYCQYLPISSNGLYDNFGHS 315 (681)
T ss_pred hhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-cccccccccCCccchhhhcCCCc
Confidence 999999999999 8999999988889999999999999999999999999999999 79999999999999999999999
Q ss_pred eeceeecCCCCCCCHhHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHhhhcCCCCcccccccCCC
Q 011259 335 YDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSYK 414 (490)
Q Consensus 335 Yn~s~il~~~~~ld~~~y~~ysp~yl~~~~~l~~~~~fa~~~a~i~~~~L~~~~~i~~~~~~~~~~~~~D~h~~lm~~Y~ 414 (490)
||+|||+|+|+++|++|||||||+|+++++++.|+.+||+++|+++|++|+|||||++++|+ ++++|+|+|+|||||
T Consensus 316 Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~---~~~~D~h~rlM~~Y~ 392 (681)
T TIGR00727 316 YNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD---DDYPDPHSNLMKAYK 392 (681)
T ss_pred cccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CCCCChhHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999974 556899999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhcccCCccccHHHHHHHHHHHHHHHHhhhheeeecCCCCchhHHHHHHHHhhc
Q 011259 415 QVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGWLV 489 (490)
Q Consensus 415 evP~WWy~~~~v~s~~l~i~~~~~~~~~~~lP~w~~~lal~l~~v~~~p~g~i~a~tg~~~~ln~~~eli~G~~~ 489 (490)
|||+|||++++++|+++++++++.|++ ++|||++++|+++++++.+|+|+++|+||+++++|+++|+|+||++
T Consensus 393 evP~WWy~~~l~is~~~~~~~v~~~~t--~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~ 465 (681)
T TIGR00727 393 EVPDWWYLAVFLGFFGMGIATVEHWPT--ETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYAL 465 (681)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhcc
Confidence 999999999999999999999999965 5999999999999999999999999999999999999999999985
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.9e-91 Score=774.28 Aligned_cols=437 Identities=38% Similarity=0.703 Sum_probs=400.3
Q ss_pred hhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHhHHHHHHhhcCCccceeccce
Q 011259 25 EEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWR 104 (490)
Q Consensus 25 ~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~ 104 (490)
||||+ ||++|||++|++|+|+|++|++++++++++||||++|+|+++.+++++|+++||+||+|+|++|+|+ |+|
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~----~~~ 75 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE----GWK 75 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc----ccc
Confidence 69999 9999999999999999999999999999999999999999999999999999999999999999987 688
Q ss_pred eccCCCCCCcccceeeEeecccccccccccchhhhHHHHHHHHhcCCCcHHHHHHHHHHHhh--hhHHHHhhcccceecc
Q 011259 105 FSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQI--LGYGWAGMLRRYLVDP 182 (490)
Q Consensus 105 ~~LNPGpF~~KEh~li~imA~~a~~~~~~~~~a~~~i~~~~~fy~~~~~~~~~il~~ls~q~--lG~g~AgllR~~lV~p 182 (490)
|+|||||||+|||+++|+|||++ .+.+++++++.+|++||+++.++++++++++++|+ +|+++||++||++|+|
T Consensus 76 ~~lnpgpft~kE~~~iq~~asa~----~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~ 151 (654)
T TIGR00728 76 FSLNPGPFNVKENNLIQTAASAC----GGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVP 151 (654)
T ss_pred eecCCCCCChhhheeEEeeeecc----ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCc
Confidence 99999999999999999999999 66778899999999999999999999999999999 9999999999999999
Q ss_pred CCccCCchHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhcccCccceeeecccccc
Q 011259 183 VEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHG 262 (490)
Q Consensus 183 ~~~iwPs~l~t~~l~~sLH~~~~~~~~~sr~kfF~~~f~~~fv~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~i~Gg~~G 262 (490)
++|+||+++|+++|+|+||++.+++++.++.| +.+.+ |.++|+.++.++|+||+.|++..++ +|| |
T Consensus 152 ~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r-~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 152 AKLPWPSGLATAELFKALHGKFHTANGDTIAK-NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccccCCcccHHHHHHHHhhhccCccCCCccch-hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 99999999999999999976544333223333 22111 7788888889999999999988875 555 8
Q ss_pred cccccceecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCcccccCCCCceec-eeec
Q 011259 263 LGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDT-TKIL 341 (490)
Q Consensus 263 lGl~~~tfDW~~i~~~~g~pl~~P~~a~~n~~~G~vl~~~ii~P~lyy~~n~w~~~~lPi~S~~~fd~~G~~Yn~-s~il 341 (490)
+|+++++|||+++.+++|+|+++|+++++|+++|.+++|+++.|++|| +|+|+++++|++|++.||++|.+|+. ++|+
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~-~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il 296 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYY-KNTWPADADPIDSSSTIDSTGVRYNSVGLIV 296 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccCCCcchhhhcCCCceeeeeeEEE
Confidence 899999999999977899999999999999999999999999999999 69999999999999999999999998 9999
Q ss_pred CCC-CCCCHhHHhhcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHhhhcCCCCcccccccCC-------
Q 011259 342 TPQ-YDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSY------- 413 (490)
Q Consensus 342 ~~~-~~ld~~~y~~ysp~yl~~~~~l~~~~~fa~~~a~i~~~~L~~~~~i~~~~~~~~~~~~~D~h~~lm~~Y------- 413 (490)
+++ .++|+++|++|||+|+++++ |+.+|+.++++++|++++|+|++++++|+.. ++.+|.|.|+||+|
T Consensus 297 ~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~ 372 (654)
T TIGR00728 297 VDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDHY-KLGRDDHVRLLSRDEDLKVKN 372 (654)
T ss_pred eCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-hccCCCChHHHhhcccccccc
Confidence 987 68999999999999999999 9999999999999999999999999988763 34456676665555
Q ss_pred -CCCchHHHHHHHHHHHHHHHhhhhcccCCccccHHHHHHHHHHHHHHHHhhhheeeecCCCCchhHHHHHHHHhhc
Q 011259 414 -KQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGWLV 489 (490)
Q Consensus 414 -~evP~WWy~~~~v~s~~l~i~~~~~~~~~~~lP~w~~~lal~l~~v~~~p~g~i~a~tg~~~~ln~~~eli~G~~~ 489 (490)
||||+|||+.++++++++++++++.++...++|||+++++++++++|++|.++++|+||.+.++|+++|+|.|+++
T Consensus 373 ~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~ 449 (654)
T TIGR00728 373 YKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYIL 449 (654)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeec
Confidence 9999999999999999999999988875567999999999999999999999999999999999999999999974
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.9e-86 Score=732.77 Aligned_cols=418 Identities=39% Similarity=0.719 Sum_probs=394.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHhHHHHHHhhcCCccceeccceeccCCCCCCcccceee
Q 011259 41 VMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVII 120 (490)
Q Consensus 41 ~~TfRa~~lG~~l~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~~~LNPGpF~~KEh~li 120 (490)
|+|+|++++|++++++++++||||++|+++++.+++++||++|++||+++|. +++++|||||||+|||+++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~---------~~~~~ln~gp~~~kE~~~v 71 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI---------GWRFSLNPGPFTIKENNLV 71 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh---------ccccccCCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999982 3466699999999999999
Q ss_pred EeecccccccccccchhhhHHHH--HHHHhcCCCcHHHHHHHHHHHhhhhHHHHhhcccceeccCCccCCchHHHHHHHH
Q 011259 121 TIFANCGVSFGGGDAYSIGAITV--MKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLFR 198 (490)
Q Consensus 121 ~imA~~a~~~~~~~~~a~~~i~~--~~~fy~~~~~~~~~il~~ls~q~lG~g~AgllR~~lV~p~~~iwPs~l~t~~l~~ 198 (490)
|+||+++ ++++++.+++++ ++.||++++++++++++++++|++|+++|+++||++|+|++|+||+++|++++++
T Consensus 72 q~~asa~----~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~ 147 (624)
T PF03169_consen 72 QTMASAA----GGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELIN 147 (624)
T ss_pred HHHHHHh----hhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHH
Confidence 9999999 677899999999 6679999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCcccccchHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhcccCccceeeecccccccccccceecccccccc
Q 011259 199 ALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAY 278 (490)
Q Consensus 199 sLH~~~~~~~~~sr~kfF~~~f~~~fv~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~i~Gg~~GlGl~~~tfDW~~i~~~ 278 (490)
+||++++.+.+++|+|+|.++|+++|+|+|+|+|+||+|+.++|+||++|+|+++++++|+.+ ++||||++ +
T Consensus 148 alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~ 219 (624)
T PF03169_consen 148 ALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--L 219 (624)
T ss_pred HhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--h
Confidence 999987322258999999999999999999999999999999999999999999999998876 89999998 5
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhhhcc-CCccCCCCCCCCcccccCCCCceeceeecCCCCCCCHhHHhhcCC
Q 011259 279 HGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKF-DTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGK 357 (490)
Q Consensus 279 ~g~pl~~P~~a~~n~~~G~vl~~~ii~P~lyy~~-n~w~~~~lPi~S~~~fd~~G~~Yn~s~il~~~~~ld~~~y~~ysp 357 (490)
+|+|+++|+++++|+++|.+++|+++.|++|| + |.|+++++|++|+++||++|+ +|+++|+++|++|||
T Consensus 220 ~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~-~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~ 289 (624)
T PF03169_consen 220 IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYY-SGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGP 289 (624)
T ss_pred cCCCeeccHHHHHHHHHHHHHHHHhcCCeeee-eccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHH
Confidence 79999999999999999999999999999999 6 999999999999999999998 688999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHh------hhcCCCCcccccccCCCCCchHHHHHHHHHHHHH
Q 011259 358 LYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSA------MKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGL 431 (490)
Q Consensus 358 ~yl~~~~~l~~~~~fa~~~a~i~~~~L~~~~~i~~~~~~~------~~~~~~D~h~~lm~~Y~evP~WWy~~~~v~s~~l 431 (490)
++.++.+.++|+..|+.+++.++|.+++|+|++++++++. .+++++|+|+|+||+|||||+|||+.++++++++
T Consensus 290 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~ 369 (624)
T PF03169_consen 290 MYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVL 369 (624)
T ss_pred HHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543 2356789999999999999999999999999999
Q ss_pred HHhhhhcccCCccccHHHHHHHHHHHHHHHHhhhheeeecCC--CCchhHHHHHHHHhhc
Q 011259 432 SLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQ--QPGYDIIAQFMIGWLV 489 (490)
Q Consensus 432 ~i~~~~~~~~~~~lP~w~~~lal~l~~v~~~p~g~i~a~tg~--~~~ln~~~eli~G~~~ 489 (490)
++++++.++.++++|||+.++++++++++++|.++++|+||+ +.++|+++|+|+|+++
T Consensus 370 ~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~ 429 (624)
T PF03169_consen 370 AIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL 429 (624)
T ss_pred HHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH
Confidence 999999888667799999999999999999999999999999 7789999999999874
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=99.97 E-value=1.4e-29 Score=277.07 Aligned_cols=357 Identities=12% Similarity=0.078 Sum_probs=250.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHhHHHHHHhhcCCccceeccceeccCCCCCCcccceeeE
Q 011259 42 MTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVIIT 121 (490)
Q Consensus 42 ~TfRa~~lG~~l~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~~~LNPGpF~~KEh~li~ 121 (490)
+|+|++++|++++++.++.|.|+++|.+.+.-.++.+.+++|.+.|++. ++|++||+++|
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~--------------------~~t~~EnnivQ 61 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR--------------------DRSILENNMVQ 61 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc--------------------cCChhHHHHHH
Confidence 7999999999999999999999999999999999999999999999763 26999999999
Q ss_pred eecccccccccccchhhhHHHHHHHHhc----CCCcHHHHHHHHHHHhhhhHHHHhhcccceeccCCccCCchHHHHHHH
Q 011259 122 IFANCGVSFGGGDAYSIGAITVMKAYYK----QSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLF 197 (490)
Q Consensus 122 imA~~a~~~~~~~~~a~~~i~~~~~fy~----~~~~~~~~il~~ls~q~lG~g~AgllR~~lV~p~~~iwPs~l~t~~l~ 197 (490)
++|++++++ + .++.+.+.+|- ++++++..++++++..++|..++.||||.+|.++++.||++.|++.++
T Consensus 62 T~asA~~~~------a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l 134 (591)
T TIGR00733 62 TAASAAGTL------S-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVL 134 (591)
T ss_pred HHHHHHHHH------H-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Confidence 999999533 2 36667776663 357899999999999999999999999999999999999999999999
Q ss_pred HHhcccCCcccccchHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhcccCccceeeecccccccccccceeccccccc
Q 011259 198 RALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISA 277 (490)
Q Consensus 198 ~sLH~~~~~~~~~sr~kfF~~~f~~~fv~~~~P~yifp~Ls~~~~~cwi~p~n~~~~~i~Gg~~GlGl~~~tfDW~~i~~ 277 (490)
++-.+. + +++|.|.+...+..+++|.++++ +.... ...-.|.. . |.+..-+++||++.
T Consensus 135 ~~g~~g--~--~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~---------~----g~~~~~~~~~~Spa-- 192 (591)
T TIGR00733 135 KAGDKA--R--NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL---------V----GRRALYFGSDLSLA-- 192 (591)
T ss_pred Hccccc--c--chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh---------c----CCcceEEEecccHH--
Confidence 974221 1 25678889999999999999843 22111 11111111 1 11122246899986
Q ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCcccccCCCCceeceeecCCCCCCCHhHHhhcCC
Q 011259 278 YHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGK 357 (490)
Q Consensus 278 ~~g~pl~~P~~a~~n~~~G~vl~~~ii~P~lyy~~n~w~~~~lPi~S~~~fd~~G~~Yn~s~il~~~~~ld~~~y~~ysp 357 (490)
++|.++++|+.+.+++++|.+++|+++.|.+.. ++ |.....|.. + ....+-.+.+
T Consensus 193 lvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~-~~-~~~~~~~~~---------~--------------~~~~vw~~~v 247 (591)
T TIGR00733 193 LIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTA-KM-GSPGDLSAL---------D--------------LAWTIWSTKV 247 (591)
T ss_pred HHcCceeeChHHHHHHHHHHHHHHHHHHHHHHh-cC-CCCCCccHH---------H--------------HHHHHHhccc
Confidence 999999999999999999999999999999987 33 332111100 0 0111223345
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHhhhc--CCCCcccccccCCCCCchHHHHHHHHHHHHHHHhh
Q 011259 358 LYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKN--MKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLM 435 (490)
Q Consensus 358 ~yl~~~~~l~~~~~fa~~~a~i~~~~L~~~~~i~~~~~~~~~~--~~~D~h~~lm~~Y~evP~WWy~~~~v~s~~l~i~~ 435 (490)
+|...+ .+.+.+... . +...|.+++.+|+..+. +.++. .+.-|..+|+|.||-..+.++ +++.
T Consensus 248 R~iGvg--~m~~~gl~~-------l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~dip~~~v~~~~~~-~~~~--- 312 (591)
T TIGR00733 248 RYIGVG--AIVVAALWT-------L-LKLRGPIARGIKAGLEAARRRQAG-EAVLRTEEDLPINIVLTLVAL-FVIP--- 312 (591)
T ss_pred chhhHH--HHHHHHHHH-------H-HHHHHHHHHHHHHHHHHhcccccc-cccccccccccHHHHHHHHHH-HHHH---
Confidence 663333 332222222 2 34556555555443211 11111 123566788999964433332 2111
Q ss_pred hhcccCCccccH---------HHHHHHHHHHHHHHHhhhheeee--cCCCC--chhHHHHHHHHhhc
Q 011259 436 SFVWKDEVQLQW---------WGMLFAFALAWIVTLPIGVIQAT--TNQQP--GYDIIAQFMIGWLV 489 (490)
Q Consensus 436 ~~~~~~~~~lP~---------w~~~lal~l~~v~~~p~g~i~a~--tg~~~--~ln~~~eli~G~~~ 489 (490)
. ++..++.|. .+.+++++++++++.-.|.+.+. |+.+| ++..++|++.+.++
T Consensus 313 ~--~~~~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~ 377 (591)
T TIGR00733 313 L--ADFLLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALIL 377 (591)
T ss_pred H--HHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 1 112333443 57788999999999999999999 54566 58999999988764
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.76 E-value=3.3e-17 Score=174.60 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=177.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHhHHHHHHhhcCCccceeccceeccCCCCCCcccc
Q 011259 38 TMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEH 117 (490)
Q Consensus 38 ~~p~~TfRa~~lG~~l~~~~~~~N~~f~~r~~~i~i~~~~~qll~~plG~~~a~~lP~~~~~~~~~~~~LNPGpF~~KEh 117 (490)
.+|.+|+|++++|++++++..+.|.|+++|.+....+++-+.++|..+.|++. ++|+.||
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~--------------------~~silEN 70 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK--------------------GSSILEN 70 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC--------------------ccchhhh
Confidence 67899999999999999999999999999999999999999999988887652 5699999
Q ss_pred eeeEeecccccccccccchhhhHHHHHHH-HhcCCCcHHHHHHHHHHHhhhhHHHHhhcccceeccCCccCCchHHHHHH
Q 011259 118 VIITIFANCGVSFGGGDAYSIGAITVMKA-YYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSL 196 (490)
Q Consensus 118 ~li~imA~~a~~~~~~~~~a~~~i~~~~~-fy~~~~~~~~~il~~ls~q~lG~g~AgllR~~lV~p~~~iwPs~l~t~~l 196 (490)
+++|++|++++.++++ ..-++.+..+ -|.++++++.....+..-.++|..|..+|||.+|.++++-||++.|++.+
T Consensus 71 NmVQT~ASAagtlsa~---vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEv 147 (624)
T COG1297 71 NMVQTQASAAGTLSAG---VIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEV 147 (624)
T ss_pred HHHHHHHhhhcccccc---EEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHH
Confidence 9999999999533211 2233344433 44588999888888899999999999999999999999999999999999
Q ss_pred HHHhcccCCcccccchHHHHHHHHHHHHHHHhhhh---hhhhhhcccchhhhcccCccceeeecccccccccccceeccc
Q 011259 197 FRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPG---YLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWA 273 (490)
Q Consensus 197 ~~sLH~~~~~~~~~sr~kfF~~~f~~~fv~~~~P~---yifp~Ls~~~~~cwi~p~n~~~~~i~Gg~~GlGl~~~tfDW~ 273 (490)
+++...++.. .+..|-..+......+|.++-+ .+... +-+|.+ .++. ..-+..|.+
T Consensus 148 L~~g~~~~gd---~~g~~~i~~g~~~~~~~~~l~~g~~~~~~~-----~~~~~~----------~~~~---~~~lg~~~S 206 (624)
T COG1297 148 LKAGNQREGD---ASGIKLIALGGALAALYSLLASGLRVIASS-----LSAAFS----------VGRA---AFALGLGLS 206 (624)
T ss_pred HHhcCCCCCC---cccchhhhhhhHHHHHHHHHhccceeehhh-----HHHHHH----------hcch---hhhhccccc
Confidence 9998743322 1456667777777888877764 22211 111221 1111 112234555
Q ss_pred ccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhh
Q 011259 274 GISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYW 310 (490)
Q Consensus 274 ~i~~~~g~pl~~P~~a~~n~~~G~vl~~~ii~P~lyy 310 (490)
.+ ++|.+-+++..+..-++.|.+++|++.+|++-+
T Consensus 207 ~A--liG~GylvGl~~~iaml~G~~iaWgvavP~~~~ 241 (624)
T COG1297 207 LA--LIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL 241 (624)
T ss_pred HH--HhCceEEecchHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 789999999999999999999999999998766
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=76.83 E-value=62 Score=36.55 Aligned_cols=73 Identities=11% Similarity=-0.060 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHHhhhhHHHHhhcccceecc----------CCccCCchHHHHHHHHHhcccCCcccccchHHHHHHHHH
Q 011259 152 LNFLCGLLIVLTTQILGYGWAGMLRRYLVDP----------VEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLA 221 (490)
Q Consensus 152 ~~~~~~il~~ls~q~lG~g~AgllR~~lV~p----------~~~iwPs~l~t~~l~~sLH~~~~~~~~~sr~kfF~~~f~ 221 (490)
.++-.+...-+...++|...+...-+.+-.+ ..+.=|+....+++.+.+-++.+ ..+++.+.++++
T Consensus 465 ~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~ 540 (624)
T PF03169_consen 465 IPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFL 540 (624)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHH
Confidence 4555555544444555555555444433222 22333566667777777765432 356777777666
Q ss_pred HHHHHHh
Q 011259 222 ASFAYYS 228 (490)
Q Consensus 222 ~~fv~~~ 228 (490)
+.++-..
T Consensus 541 ~G~~~~i 547 (624)
T PF03169_consen 541 IGAVLPI 547 (624)
T ss_pred HHHHHHH
Confidence 6555444
No 8
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=40.29 E-value=90 Score=30.98 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=33.6
Q ss_pred chHHHHHhHHhhhcCCCCcccccccCCCCCchHHHHHHHHHHHHHHHhhhhcccCCccccHHHHHHHHHHHHHHH
Q 011259 387 GSAILEQSRSAMKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVT 461 (490)
Q Consensus 387 ~~~i~~~~~~~~~~~~~D~h~~lm~~Y~evP~WWy~~~~v~s~~l~i~~~~~~~~~~~lP~w~~~lal~l~~v~~ 461 (490)
.++||+.++-.++ .+|.+++|.-++. ++.++++++.... ++-+|+.+++++.++++..
T Consensus 10 ~~Qi~q~y~~trk------------~dp~l~~~ml~a~-l~~~~v~v~ig~l----~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 10 RKQIWQAYKMTRK------------EDPKLPWLMLGAF-LGPIAVFVLIGLL----FGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred HHHHHHHHHHHHH------------HCcchHHHHHHHH-HHHHHHHHHHHHH----HccHHHHHHHHHHHHHHHH
Confidence 3567777765532 2467776665553 3334444443322 3366777888888877654
No 9
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=38.15 E-value=36 Score=23.18 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011259 46 AWFLGLTSCTLLIFLNTF 63 (490)
Q Consensus 46 a~~lG~~l~~~~~~~N~~ 63 (490)
+|++|+.+.+..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 10
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=37.30 E-value=75 Score=34.68 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=30.6
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccCCccccHHHHHHHHHHHHHHHHhhhheeeecCCCC
Q 011259 416 VPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQP 475 (490)
Q Consensus 416 vP~WWy~~~~v~s~~l~i~~~~~~~~~~~lP~w~~~lal~l~~v~~~p~g~i~a~tg~~~ 475 (490)
-++++|+.+.++.+++-+.. ....-.+.. |.+--...+.++..+-++++...++.++
T Consensus 251 ~~~~~~~~~~~l~~~~li~g--~~~~~~~~~-~~~~~~~~~fl~~~ii~~~i~~~~~~~~ 307 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYG--FSFVIIKIK-WYFPEIAALFLIIGIIIGLIRHRSGKSP 307 (465)
T ss_pred cccceeehHHHHHHHHHHhc--hhhhhcccc-ccHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 57888999988888665542 000111122 3333444455555556666665555544
No 11
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=36.91 E-value=43 Score=22.46 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011259 46 AWFLGLTSCTLLIFLNTF 63 (490)
Q Consensus 46 a~~lG~~l~~~~~~~N~~ 63 (490)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 12
>PRK10983 putative inner membrane protein; Provisional
Probab=36.39 E-value=88 Score=33.11 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=10.8
Q ss_pred HHHHHHHhchHHHHHhHH
Q 011259 379 LTHVALFHGSAILEQSRS 396 (490)
Q Consensus 379 i~~~~L~~~~~i~~~~~~ 396 (490)
+.+.++.+++.+++.+++
T Consensus 173 ~~ff~l~dg~~l~~~~~~ 190 (368)
T PRK10983 173 FSALLYWRGEQVALGIRH 190 (368)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 344556667777666654
No 13
>PHA02957 hypothetical protein; Provisional
Probab=36.35 E-value=26 Score=32.53 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=28.7
Q ss_pred CccccccCCCCCCCCCCCCCCchhh---------hhhcCCCCCCCCCCcchhHHHHH
Q 011259 2 ATKTQTESNENPNGDSTEERCPIEE---------VALIVPETDDPTMPVMTFRAWFL 49 (490)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~spy~e---------Vra~v~~~DDp~~p~~TfRa~~l 49 (490)
+.|..+|.||-|+-+ -.|+.- +...+.++.||+-|++.+-+|-=
T Consensus 40 ~sk~s~edneiddvp----~cp~kmfn~kk~~gpivnm~apdgdpt~pimald~~h~ 92 (206)
T PHA02957 40 ASKLSREDNEIDDVP----TCPRKMFNKKKGMGPIVNMKAPDGDPTAPIMALDAWHK 92 (206)
T ss_pred cccccccccccccCC----CCcHHHhhhccccCceeEeeCCCCCCCCcEEehhhhcc
Confidence 456667766665544 344433 33456777799999998888753
No 14
>PRK14749 hypothetical protein; Provisional
Probab=35.95 E-value=41 Score=22.78 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011259 46 AWFLGLTSCTLLIFLNTF 63 (490)
Q Consensus 46 a~~lG~~l~~~~~~~N~~ 63 (490)
+|++|+.+++..+.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999864
No 15
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion]
Probab=29.28 E-value=31 Score=34.77 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=35.4
Q ss_pred chhhhhhcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhc
Q 011259 23 PIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTF 66 (490)
Q Consensus 23 py~eVra~v~~~DDp~~p~~TfRa~~lG~~l~~~~~~~N~~f~~ 66 (490)
=|..||.++|...|++. ++.|-+++|.+-+.++|.+|.=|-.
T Consensus 184 ~y~~vrn~vP~~k~~~~--~~~~~~i~g~l~gtla~~ln~pfDV 225 (294)
T KOG0754|consen 184 FYYQVRNSVPSAKDKTL--EIRRKLIIGALAGTLACVLNTPFDV 225 (294)
T ss_pred hHHHHHhhCCCccCcHH--HHHHHHHHHHhhhhhhhhccChhHH
Confidence 35668999999998874 8999999999999999999976643
No 16
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=28.99 E-value=81 Score=32.78 Aligned_cols=86 Identities=9% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhchHHHHHhHHhhhcCCCCcccccc-cCCCCCchHHHHHHHHHHHHHHHhhhhcccCCccccHHHHHHH
Q 011259 375 FTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLM-KSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFA 453 (490)
Q Consensus 375 ~~a~i~~~~L~~~~~i~~~~~~~~~~~~~D~h~~lm-~~Y~evP~WWy~~~~v~s~~l~i~~~~~~~~~~~lP~w~~~la 453 (490)
+.-.++..+|.+++++++.+++...++..+...+.. +-.+.+-.|..+-. +++++.|+.+...+. -.|+| .+++++
T Consensus 163 l~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq~-i~al~~gi~~~igl~-ilgvp-~alllg 239 (355)
T COG0628 163 LVLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQV-LVALIVGILTGIGLL-ILGVP-YALLLG 239 (355)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHccc-HHHHHH
Confidence 344455567788999988886653222222222222 22455666665544 444555554322221 24565 456677
Q ss_pred HHHHHHHHHh
Q 011259 454 FALAWIVTLP 463 (490)
Q Consensus 454 l~l~~v~~~p 463 (490)
++.++.=.+|
T Consensus 240 il~g~~~lIP 249 (355)
T COG0628 240 LLAGLLSLIP 249 (355)
T ss_pred HHHHHHHhhc
Confidence 7777777777
No 17
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=28.93 E-value=1.7e+02 Score=21.36 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhHHh
Q 011259 366 LSIGSGFARFTSTLTHVALFHGSAILEQSRSA 397 (490)
Q Consensus 366 l~~~~~fa~~~a~i~~~~L~~~~~i~~~~~~~ 397 (490)
.+|+.+++.+...+.+... .+|...+.++..
T Consensus 10 ~sYg~t~l~l~~li~~~~~-~~r~~~~~l~~~ 40 (45)
T TIGR03141 10 LAYGITALVLAGLILWSLL-DRRRLLRELRRL 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3688888888888888854 566666655443
No 18
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=26.62 E-value=1.2e+02 Score=26.99 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 011259 43 TFRAWFLGLTSCTLLIF 59 (490)
Q Consensus 43 TfRa~~lG~~l~~~~~~ 59 (490)
-.|+..+++++-++|+.
T Consensus 40 pwK~I~la~~Lli~G~~ 56 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTV 56 (115)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58999998877766654
No 19
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=24.58 E-value=1.5e+02 Score=27.41 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=12.5
Q ss_pred CchHHHHHHHHHHHHHHH
Q 011259 416 VPQWWFYVLLLGSIGLSL 433 (490)
Q Consensus 416 vP~WWy~~~~v~s~~l~i 433 (490)
+|.|||+...++...++.
T Consensus 9 ~p~~wW~~~~~~~~~~~~ 26 (143)
T PF11292_consen 9 VPWWWWLAAAAVAALLAA 26 (143)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999887777443443
No 20
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=21.31 E-value=1.1e+02 Score=21.46 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011259 46 AWFLGLTSCTLLIFLNTF 63 (490)
Q Consensus 46 a~~lG~~l~~~~~~~N~~ 63 (490)
+|++|+.++|..+.+|..
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999988888854
Done!