Query 011259
Match_columns 490
No_of_seqs 131 out of 874
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 28.2 46 0.0016 31.3 3.8 26 402-429 101-126 (214)
2 2k1a_A Integrin alpha-IIB; sin 24.9 74 0.0025 22.3 3.5 20 444-463 7-26 (42)
3 2knc_A Integrin alpha-IIB; tra 23.6 73 0.0025 23.5 3.5 20 444-463 9-28 (54)
4 2l8s_A Integrin alpha-1; trans 23.2 68 0.0023 23.7 3.2 19 444-462 6-24 (54)
5 2l8s_A Integrin alpha-1; trans 16.3 2E+02 0.0068 21.2 4.4 40 280-321 2-42 (54)
6 3s0x_A Peptidase A24B, FLAK do 12.9 1.8E+02 0.006 27.8 4.3 24 412-435 27-50 (237)
7 3iyz_A Aquaporin-4; water tran 10.8 4.4E+02 0.015 26.3 6.7 18 399-416 28-46 (340)
8 2v2f_A Penicillin binding prot 9.9 96 0.0033 18.7 0.9 14 322-335 4-17 (26)
9 3mk7_C Cytochrome C oxidase, C 8.9 8.3E+02 0.028 23.3 7.9 31 409-440 47-77 (311)
10 2knc_A Integrin alpha-IIB; tra 7.6 4.9E+02 0.017 19.0 4.1 37 284-322 9-46 (54)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=28.19 E-value=46 Score=31.25 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=15.2
Q ss_pred CCCcccccccCCCCCchHHHHHHHHHHH
Q 011259 402 KLDVHARLMKSYKQVPQWWFYVLLLGSI 429 (490)
Q Consensus 402 ~~D~h~~lm~~Y~evP~WWy~~~~v~s~ 429 (490)
+++||.| |++|-|+ .|-|..++.+-+
T Consensus 101 ~esPH~r-~~~yIE~-AW~fST~lGi~L 126 (214)
T 4hkr_A 101 HESPHER-LHWYIET-AWAFSTLLGLIL 126 (214)
T ss_dssp ---CHHH-HHHHHHH-HHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHHH-HHHHHHHHHHHH
Confidence 3689988 6888875 677655543333
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.90 E-value=74 Score=22.27 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHHHHHHHHh
Q 011259 444 QLQWWGMLFAFALAWIVTLP 463 (490)
Q Consensus 444 ~lP~w~~~lal~l~~v~~~p 463 (490)
+.|+|-+++|++.+.++...
T Consensus 7 ~vp~wiIi~s~l~GLllL~l 26 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTI 26 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 46666666666666555443
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.58 E-value=73 Score=23.53 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHHHHHHHHh
Q 011259 444 QLQWWGMLFAFALAWIVTLP 463 (490)
Q Consensus 444 ~lP~w~~~lal~l~~v~~~p 463 (490)
++|+|-+++|++.++++...
T Consensus 9 ~vp~wiIi~svl~GLllL~l 28 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTI 28 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 46666666666666555443
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.19 E-value=68 Score=23.72 Aligned_cols=19 Identities=11% Similarity=0.405 Sum_probs=10.6
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 011259 444 QLQWWGMLFAFALAWIVTL 462 (490)
Q Consensus 444 ~lP~w~~~lal~l~~v~~~ 462 (490)
++|+|-+++|++.++++..
T Consensus 6 ~vp~WiIi~svl~GLLLL~ 24 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLM 24 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHH
Confidence 3566666666555555543
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=16.33 E-value=2e+02 Score=21.22 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=24.1
Q ss_pred CCcccccHHHHH-HHHHHHHHHHHHHHHHhhhccCCccCCCCC
Q 011259 280 GSPLVTPWTSIL-NVGIGFVMFIYIIVPLCYWKFDTFDARKFP 321 (490)
Q Consensus 280 g~pl~~P~~a~~-n~~~G~vl~~~ii~P~lyy~~n~w~~~~lP 321 (490)
|.|--+|+|..+ +..+|.++- .++.-++|. .|.+.-++-+
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL-~Lii~~LwK-~GFFKR~~~~ 42 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLL-MLLILALWK-IGFFKRPLKK 42 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHH-HHHHHHHHH-HHHTTSCCSC
T ss_pred CCCccCchHHHHHHHHHHHHHH-HHHHHHHHH-cCcccCCCcc
Confidence 456668888755 455555544 455547776 6876655533
No 6
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=12.88 E-value=1.8e+02 Score=27.76 Aligned_cols=24 Identities=4% Similarity=0.198 Sum_probs=17.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhh
Q 011259 412 SYKQVPQWWFYVLLLGSIGLSLLM 435 (490)
Q Consensus 412 ~Y~evP~WWy~~~~v~s~~l~i~~ 435 (490)
|++++|+|-+..++++++.+++..
T Consensus 27 k~R~IpN~l~~~ll~~gi~l~~~~ 50 (237)
T 3s0x_A 27 RSREIEDYIWIFLAVFGVLFAIYS 50 (237)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcEeCchhHHHHHHHHHHHHHHH
Confidence 368999999999888887776543
No 7
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=10.77 E-value=4.4e+02 Score=26.34 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=10.5
Q ss_pred hcCCCCccc-ccccCCCCC
Q 011259 399 KNMKLDVHA-RLMKSYKQV 416 (490)
Q Consensus 399 ~~~~~D~h~-~lm~~Y~ev 416 (490)
+++..||+. +.|.+.++.
T Consensus 28 ~~~~~~ps~~~~~~~~~~~ 46 (340)
T 3iyz_A 28 DDDDKDPSSRSIMVAFKGV 46 (340)
T ss_pred CCCCCCCcchhhhhhhhhh
Confidence 344567754 566666665
No 8
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=9.88 E-value=96 Score=18.74 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=10.6
Q ss_pred CCCcccccCCCCce
Q 011259 322 IFSNQLFTSSGHKY 335 (490)
Q Consensus 322 i~S~~~fd~~G~~Y 335 (490)
-.++.+||++|+.-
T Consensus 4 ~~ss~IYD~~g~~i 17 (26)
T 2v2f_A 4 TTSSKIYDNKNQLI 17 (26)
T ss_pred CCCCEEEeCCCCEe
Confidence 35678999999853
No 9
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=8.94 E-value=8.3e+02 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.760 Sum_probs=19.4
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHhhhhccc
Q 011259 409 LMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWK 440 (490)
Q Consensus 409 lm~~Y~evP~WWy~~~~v~s~~l~i~~~~~~~ 440 (490)
+..-.+.+|.||... ++++++.+++-...|+
T Consensus 47 i~e~~nplp~ww~~~-f~~~iv~~~~y~~~yp 77 (311)
T 3mk7_C 47 IEEYDNPLPRWWFLL-FIGTLVFGILYLVLYP 77 (311)
T ss_dssp BCBCCCCCCHHHHHH-HHHHHHHHHHHHHHST
T ss_pred hhhccCCCChHHHHH-HHHHHHHHHHHHHHHh
Confidence 334456789998755 4555666666555555
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.56 E-value=4.9e+02 Score=19.03 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=22.8
Q ss_pred cccHHHHH-HHHHHHHHHHHHHHHHhhhccCCccCCCCCC
Q 011259 284 VTPWTSIL-NVGIGFVMFIYIIVPLCYWKFDTFDARKFPI 322 (490)
Q Consensus 284 ~~P~~a~~-n~~~G~vl~~~ii~P~lyy~~n~w~~~~lPi 322 (490)
-+|+|..+ +..+|.++- .++.-++|. .|.+.-++-|.
T Consensus 9 ~vp~wiIi~svl~GLllL-~li~~~LwK-~GFFkR~~~~~ 46 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLL-TILVLAMWK-VGFFKRNRPPL 46 (54)
T ss_dssp TCCHHHHHHHHHHHHHHH-HHHHHHHHH-HHHTTTTCCSC
T ss_pred CcchHHHHHHHHHHHHHH-HHHHHHHHH-cCcccCCCCCc
Confidence 47888755 555555554 455547776 78776666554
Done!