Query 011259
Match_columns 490
No_of_seqs 131 out of 874
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 5.4 2E+02 0.015 17.7 2.4 13 448-460 19-31 (37)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 5.3 1.9E+02 0.014 16.9 2.2 20 453-472 9-28 (32)
3 d1x3ha2 g.39.1.3 (A:43-74) Leu 4.2 1.4E+02 0.01 18.2 0.9 16 320-335 7-22 (32)
4 d1lrva_ a.118.1.5 (A:) Leucine 4.1 1.5E+02 0.011 25.5 1.6 26 21-49 52-87 (233)
5 d1ctda_ a.39.1.5 (A:) Troponin 3.6 1.4E+02 0.01 18.2 0.5 10 326-335 11-20 (34)
6 d1s4ea1 d.14.1.5 (A:5-180) Gal 3.5 3.9E+02 0.029 20.7 3.8 34 127-160 97-130 (176)
7 d1gvda_ a.4.1.3 (A:) c-Myb, DN 3.5 1.2E+02 0.0088 19.9 0.3 7 110-116 4-10 (52)
8 d2hf5a1 a.39.1.5 (A:81-113) Tr 3.2 1.5E+02 0.011 18.0 0.4 10 326-335 10-19 (33)
9 d1hvwa_ g.3.6.2 (A:) Atracotox 2.8 1.7E+02 0.013 16.3 0.4 14 108-123 6-19 (26)
10 d1prtf_ b.40.2.1 (F:) Pertussi 2.8 1.6E+02 0.011 21.4 0.2 9 19-27 73-81 (98)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.36 E-value=2e+02 Score=17.66 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 011259 448 WGMLFAFALAWIV 460 (490)
Q Consensus 448 w~~~lal~l~~v~ 460 (490)
|++++-.+++..|
T Consensus 19 ~GlLlifvl~vLF 31 (37)
T d2axtl1 19 LGLLLILVLALLF 31 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555544444444
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.30 E-value=1.9e+02 Score=16.89 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhheeeecC
Q 011259 453 AFALAWIVTLPIGVIQATTN 472 (490)
Q Consensus 453 al~l~~v~~~p~g~i~a~tg 472 (490)
-+.++++|-+..|++.|+-.
T Consensus 9 ivfialffgiavgiifaiks 28 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhheeeEEE
Confidence 34445555556666665543
No 3
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.18 E-value=1.4e+02 Score=18.18 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=13.2
Q ss_pred CCCCCcccccCCCCce
Q 011259 320 FPIFSNQLFTSSGHKY 335 (490)
Q Consensus 320 lPi~S~~~fd~~G~~Y 335 (490)
-||.+.+-|.-+|++|
T Consensus 7 ~PF~~~~Fy~~~g~Py 22 (32)
T d1x3ha2 7 TSFSTGSFFELDGRPF 22 (32)
T ss_dssp CBSCSSCCEESSSCEE
T ss_pred CcCCCCCeEeECCccc
Confidence 4788888888888887
No 4
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}
Probab=4.13 E-value=1.5e+02 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=18.3
Q ss_pred CCchhhhhhcC----------CCCCCCCCCcchhHHHHH
Q 011259 21 RCPIEEVALIV----------PETDDPTMPVMTFRAWFL 49 (490)
Q Consensus 21 ~spy~eVra~v----------~~~DDp~~p~~TfRa~~l 49 (490)
++||.|||++. +.-+||+ .++|.-..
T Consensus 52 ~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d---~~VR~~AA 87 (233)
T d1lrva_ 52 ADPFWERRAIAVRYSPVEALTPLIRDSD---EVVRRAVA 87 (233)
T ss_dssp TCSSHHHHHHHHTTSCGGGGGGGTTCSS---HHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCHHHHHHHhcCCC---HHHHHHHH
Confidence 68999999752 4456654 78887654
No 5
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.59 E-value=1.4e+02 Score=18.17 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=6.3
Q ss_pred ccccCCCCce
Q 011259 326 QLFTSSGHKY 335 (490)
Q Consensus 326 ~~fd~~G~~Y 335 (490)
++||+|+.-|
T Consensus 11 RifDkNaDGy 20 (34)
T d1ctda_ 11 RIFDKNADGY 20 (34)
T ss_dssp HTTCCSSSSC
T ss_pred HHHccCCccc
Confidence 5678766543
No 6
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=3.52 E-value=3.9e+02 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.487 Sum_probs=25.2
Q ss_pred ccccccccchhhhHHHHHHHHhcCCCcHHHHHHH
Q 011259 127 GVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLI 160 (490)
Q Consensus 127 a~~~~~~~~~a~~~i~~~~~fy~~~~~~~~~il~ 160 (490)
++|+++++++.+.++.+...+++.+++.-...-+
T Consensus 97 gsGLgSSAAl~va~~~al~~~~~~~~~~~~l~~~ 130 (176)
T d1s4ea1 97 GAGLSSSASFEVGILEVLNQLYNLNIDPLKKALL 130 (176)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 4467778888888888899999988876544333
No 7
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.51 E-value=1.2e+02 Score=19.88 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=2.9
Q ss_pred CCCCccc
Q 011259 110 GPFNIKE 116 (490)
Q Consensus 110 GpF~~KE 116 (490)
||||..|
T Consensus 4 g~WT~eE 10 (52)
T d1gvda_ 4 GPWTKEE 10 (52)
T ss_dssp CSCCHHH
T ss_pred CCCCHHH
Confidence 4444444
No 8
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=3.20 E-value=1.5e+02 Score=17.96 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.0
Q ss_pred ccccCCCCce
Q 011259 326 QLFTSSGHKY 335 (490)
Q Consensus 326 ~~fd~~G~~Y 335 (490)
++||++|+-|
T Consensus 10 ~~FDkDg~G~ 19 (33)
T d2hf5a1 10 RVFDKDGNGY 19 (33)
T ss_dssp HHHSSSCCSC
T ss_pred HHhCCCCCCc
Confidence 5788877754
No 9
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=2.79 E-value=1.7e+02 Score=16.34 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=9.5
Q ss_pred CCCCCCcccceeeEee
Q 011259 108 NPGPFNIKEHVIITIF 123 (490)
Q Consensus 108 NPGpF~~KEh~li~im 123 (490)
.|.|+| ||++.|..
T Consensus 6 qpcpyn--enccsqsc 19 (26)
T d1hvwa_ 6 QPCPYN--ENCCSQSC 19 (26)
T ss_dssp SBCSST--TSBSSCCE
T ss_pred CcCCCC--cccccccc
Confidence 356665 88887765
No 10
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=2.77 E-value=1.6e+02 Score=21.39 Aligned_cols=9 Identities=22% Similarity=0.265 Sum_probs=7.2
Q ss_pred CCCCchhhh
Q 011259 19 EERCPIEEV 27 (490)
Q Consensus 19 ~~~spy~eV 27 (490)
.||||||+.
T Consensus 73 vedspypgt 81 (98)
T d1prtf_ 73 VEDSPYPGT 81 (98)
T ss_dssp ECCCSSSSS
T ss_pred ecCCCCCCC
Confidence 579999983
Done!