BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011260
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 11/103 (10%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P FL K++ +V DP+TD ++ WS + NSF V++ F++ +LPKYFKH N +SF+RQLN
Sbjct: 18 PAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNM 77
Query: 188 YGFKKI-----------HSNRWEFANEKFRGGKKHLLKNIKRR 219
YGF+K+ + EF + F G++ LL+NIKR+
Sbjct: 78 YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 79.0 bits (193), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQL 185
G P FL K++ +V+D +T+ ++ W+ + SF++ F++ LLP +KH N +SFIRQL
Sbjct: 3 GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQL 62
Query: 186 NTYGFKKIHS----------NRWEFANEKFRGGKKHLLKNIKRR 219
N YGF KI S + EF++ F+ LL IKR+
Sbjct: 63 NMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P F+ K++ MV D + + WS + S +V F + +LPKYFKH NF+SF+RQLN
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 188 YGFKKI-----------HSNRWEFANEK 204
YG+ K+ + +RWEF NE+
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENER 100
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P F+ K++ MV D + + WS + S +V F + +LPKYFKH NF+SF+RQLN
Sbjct: 3 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 188 YGFKKI-----------HSNRWEFANEK 204
YG+ K+ + +RWEF NE+
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENER 90
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat Shock
Transcription Factor's Dna Binding Domain And Cognate
Dna In A Head-To-Head Orientation
Length = 92
Score = 75.1 bits (183), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P F+ K++ V D + + WS + S +V F + +LPKYFKH NF+SF+RQLN
Sbjct: 3 PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 188 YGFKKI-----------HSNRWEFANEK 204
YG+ K+ + +RWEF NE+
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENER 90
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P F+ K++ MV D + + WS + S +V F + +L KYFKH NF+SF+RQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 188 YGFKKI-----------HSNRWEFANEK 204
YG+ K+ + +RWEF NE+
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENER 88
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P F+ K++ MV D + + WS + S +V F + +L KYFKH NF+SF+RQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 188 YGFKKI-----------HSNRWEFANEK 204
YG+ K+ + +RWEF NE+
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENER 88
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNT 187
P F+ K++ MV D + + WS + S +V F + +LPKYFKH NF+SF+RQLN
Sbjct: 1 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 188 YGFKKI-----------HSNRWEFANEK 204
YG+ K+ + +RWEF NE+
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENER 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,806,173
Number of Sequences: 62578
Number of extensions: 549122
Number of successful extensions: 1232
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 9
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)