Query 011260
Match_columns 490
No_of_seqs 260 out of 1035
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 6.2E-44 1.4E-48 357.5 9.2 187 126-312 11-209 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 100.0 5E-34 1.1E-38 245.4 6.2 93 129-221 1-102 (103)
3 smart00415 HSF heat shock fact 100.0 8.7E-34 1.9E-38 245.8 7.2 94 126-219 1-105 (105)
4 COG5169 HSF1 Heat shock transc 100.0 1.5E-32 3.3E-37 274.5 6.4 146 126-277 9-165 (282)
5 PF00178 Ets: Ets-domain; Int 94.7 0.023 5.1E-07 48.5 2.7 58 131-189 5-65 (85)
6 smart00413 ETS erythroblast tr 92.1 0.25 5.4E-06 42.7 4.6 57 133-189 7-65 (87)
7 PF03310 Cauli_DNA-bind: Cauli 90.2 0.82 1.8E-05 41.8 6.2 56 254-312 2-57 (121)
8 KOG3806 Predicted transcriptio 87.1 0.8 1.7E-05 44.3 4.3 62 127-188 68-131 (177)
9 PF06005 DUF904: Protein of un 84.0 7.1 0.00015 32.6 7.9 43 242-284 23-65 (72)
10 PRK15422 septal ring assembly 83.2 4.9 0.00011 34.3 6.7 42 242-283 23-71 (79)
11 PF04340 DUF484: Protein of un 82.5 5.3 0.00011 39.1 7.8 77 201-304 17-93 (225)
12 COG3074 Uncharacterized protei 81.7 9.1 0.0002 32.2 7.6 38 242-279 23-60 (79)
13 PF11932 DUF3450: Protein of u 81.5 13 0.00027 37.1 10.1 60 241-300 53-112 (251)
14 PF12325 TMF_TATA_bd: TATA ele 74.9 21 0.00045 32.6 8.6 56 241-296 34-92 (120)
15 TIGR02894 DNA_bind_RsfA transc 73.1 24 0.00052 33.9 8.8 53 246-298 99-151 (161)
16 PF10473 CENP-F_leu_zip: Leuci 69.7 35 0.00075 32.0 8.9 57 242-298 57-113 (140)
17 PF12329 TMF_DNA_bd: TATA elem 68.6 36 0.00077 28.4 8.0 56 241-296 16-71 (74)
18 PF02183 HALZ: Homeobox associ 67.0 24 0.00052 27.0 6.0 40 242-281 3-42 (45)
19 TIGR02449 conserved hypothetic 61.4 32 0.00069 28.4 6.2 55 243-297 6-60 (65)
20 PRK10963 hypothetical protein; 59.0 42 0.00092 33.1 7.9 75 201-302 14-88 (223)
21 PF10168 Nup88: Nuclear pore c 57.9 48 0.001 38.6 9.1 59 242-300 563-621 (717)
22 TIGR02449 conserved hypothetic 57.9 1.1E+02 0.0023 25.4 9.0 43 244-286 21-63 (65)
23 PF04728 LPP: Lipoprotein leuc 57.5 63 0.0014 26.1 7.1 42 242-283 8-49 (56)
24 TIGR03752 conj_TIGR03752 integ 57.4 50 0.0011 36.7 8.7 34 242-275 71-104 (472)
25 PF11932 DUF3450: Protein of u 56.3 1.1E+02 0.0024 30.5 10.4 56 243-298 48-103 (251)
26 PF04111 APG6: Autophagy prote 56.1 57 0.0012 34.1 8.6 46 241-286 47-92 (314)
27 PF10224 DUF2205: Predicted co 54.4 1.4E+02 0.003 25.6 9.1 42 245-286 9-51 (80)
28 PRK06800 fliH flagellar assemb 54.2 62 0.0013 32.2 7.9 33 242-274 36-68 (228)
29 KOG4005 Transcription factor X 52.6 65 0.0014 33.1 7.9 54 241-294 94-152 (292)
30 PF10779 XhlA: Haemolysin XhlA 52.4 1.3E+02 0.0028 24.6 9.1 56 242-297 4-59 (71)
31 PF09726 Macoilin: Transmembra 52.3 50 0.0011 38.3 8.1 14 241-254 422-435 (697)
32 PF02403 Seryl_tRNA_N: Seryl-t 51.7 48 0.001 28.6 6.2 48 240-287 39-89 (108)
33 PRK09039 hypothetical protein; 51.7 90 0.002 33.0 9.3 39 253-291 139-177 (343)
34 PF07106 TBPIP: Tat binding pr 51.3 36 0.00078 31.9 5.7 29 242-270 77-105 (169)
35 PF06005 DUF904: Protein of un 51.3 1.5E+02 0.0031 24.9 9.4 42 242-283 9-50 (72)
36 PF08826 DMPK_coil: DMPK coile 50.6 1.1E+02 0.0024 24.9 7.6 39 251-289 11-49 (61)
37 PF06156 DUF972: Protein of un 50.1 77 0.0017 28.4 7.3 44 243-286 14-57 (107)
38 PRK00888 ftsB cell division pr 49.4 42 0.00091 29.7 5.5 35 245-279 28-62 (105)
39 PF04880 NUDE_C: NUDE protein, 48.7 9.7 0.00021 36.6 1.5 39 242-285 19-57 (166)
40 PRK11637 AmiB activator; Provi 48.2 1.3E+02 0.0028 32.3 10.0 55 243-297 81-135 (428)
41 TIGR03752 conj_TIGR03752 integ 47.9 1.3E+02 0.0028 33.6 9.9 43 241-283 63-105 (472)
42 KOG4460 Nuclear pore complex, 46.4 84 0.0018 35.8 8.3 54 248-301 592-645 (741)
43 PRK10803 tol-pal system protei 45.5 74 0.0016 32.3 7.3 43 255-297 58-100 (263)
44 KOG2196 Nuclear porin [Nuclear 45.2 1.3E+02 0.0028 31.0 8.7 43 241-283 117-159 (254)
45 PF08317 Spc7: Spc7 kinetochor 44.4 1.4E+02 0.003 31.1 9.3 48 244-291 209-256 (325)
46 COG3074 Uncharacterized protei 43.2 1.6E+02 0.0034 25.1 7.5 47 243-289 10-56 (79)
47 PF00038 Filament: Intermediat 42.9 1.4E+02 0.0031 30.1 9.0 43 242-284 214-256 (312)
48 PRK11637 AmiB activator; Provi 42.5 1.4E+02 0.0029 32.2 9.1 30 244-273 89-118 (428)
49 PF09304 Cortex-I_coil: Cortex 42.3 1.9E+02 0.0042 26.2 8.5 54 240-293 19-72 (107)
50 smart00338 BRLZ basic region l 42.2 64 0.0014 25.5 5.1 23 256-278 31-53 (65)
51 PF07200 Mod_r: Modifier of ru 41.9 1.4E+02 0.003 27.2 7.9 50 243-292 40-89 (150)
52 KOG1853 LIS1-interacting prote 41.4 1.8E+02 0.0039 30.3 9.2 26 242-267 50-75 (333)
53 COG3883 Uncharacterized protei 41.4 1.4E+02 0.003 31.0 8.5 27 255-281 70-96 (265)
54 PF13094 CENP-Q: CENP-Q, a CEN 41.0 1.5E+02 0.0032 27.6 8.1 49 242-290 32-80 (160)
55 PF05524 PEP-utilisers_N: PEP- 40.8 71 0.0015 28.1 5.7 57 257-313 34-91 (123)
56 PRK10803 tol-pal system protei 40.6 1.5E+02 0.0033 30.1 8.7 34 250-283 60-93 (263)
57 smart00787 Spc7 Spc7 kinetocho 40.3 1.8E+02 0.0039 30.6 9.3 52 244-295 204-255 (312)
58 PRK09039 hypothetical protein; 40.1 1.5E+02 0.0033 31.3 8.9 43 245-287 124-166 (343)
59 PF04156 IncA: IncA protein; 39.7 2.1E+02 0.0046 26.9 9.1 59 241-299 92-150 (191)
60 PF06160 EzrA: Septation ring 38.6 55 0.0012 36.7 5.6 39 271-309 378-416 (560)
61 COG1579 Zn-ribbon protein, pos 38.5 2E+02 0.0043 29.4 9.0 49 241-289 93-141 (239)
62 PF10473 CENP-F_leu_zip: Leuci 38.4 2.5E+02 0.0055 26.4 9.1 40 245-284 74-113 (140)
63 PRK13729 conjugal transfer pil 38.4 1.6E+02 0.0034 33.0 8.8 50 246-295 71-120 (475)
64 PF11559 ADIP: Afadin- and alp 38.1 3.2E+02 0.0069 25.0 10.1 12 183-194 9-20 (151)
65 KOG4196 bZIP transcription fac 38.0 1.4E+02 0.0031 28.0 7.2 41 256-296 79-119 (135)
66 PRK10884 SH3 domain-containing 37.7 99 0.0022 30.6 6.6 29 188-216 65-95 (206)
67 COG1579 Zn-ribbon protein, pos 37.5 1.2E+02 0.0027 30.8 7.4 46 242-287 36-81 (239)
68 PF05377 FlaC_arch: Flagella a 37.2 1.5E+02 0.0032 23.9 6.3 31 251-281 7-37 (55)
69 KOG0977 Nuclear envelope prote 36.9 2.2E+02 0.0048 32.4 9.8 44 242-285 167-217 (546)
70 KOG3863 bZIP transcription fac 36.8 1.8E+02 0.0039 33.4 9.2 95 203-312 479-576 (604)
71 PF07407 Seadorna_VP6: Seadorn 36.5 1.6E+02 0.0034 31.7 8.1 40 246-285 34-75 (420)
72 PF04201 TPD52: Tumour protein 36.5 1.1E+02 0.0023 29.7 6.3 40 242-281 27-66 (162)
73 PF04977 DivIC: Septum formati 36.4 1.1E+02 0.0024 24.4 5.7 11 300-310 52-62 (80)
74 PF10805 DUF2730: Protein of u 36.3 1.9E+02 0.0041 25.5 7.6 41 250-290 48-90 (106)
75 COG3290 CitA Signal transducti 36.2 2.3E+02 0.0049 32.3 9.7 80 240-319 314-405 (537)
76 PF14282 FlxA: FlxA-like prote 35.9 1.9E+02 0.0041 25.5 7.5 24 242-265 17-40 (106)
77 COG4942 Membrane-bound metallo 35.8 1.8E+02 0.004 32.0 8.8 44 241-284 63-106 (420)
78 KOG4196 bZIP transcription fac 35.8 1.2E+02 0.0026 28.5 6.3 38 247-284 77-114 (135)
79 PRK13182 racA polar chromosome 35.7 1.2E+02 0.0025 29.4 6.6 16 207-222 40-55 (175)
80 PRK13169 DNA replication intia 35.6 1.4E+02 0.0031 26.9 6.7 39 245-283 16-54 (110)
81 PRK05431 seryl-tRNA synthetase 34.9 1.5E+02 0.0032 32.3 8.0 70 240-309 38-111 (425)
82 PF02183 HALZ: Homeobox associ 34.8 97 0.0021 23.7 4.7 29 244-272 12-40 (45)
83 TIGR00414 serS seryl-tRNA synt 34.7 1.8E+02 0.0038 31.6 8.5 71 239-309 39-114 (418)
84 PRK15396 murein lipoprotein; P 34.6 1.8E+02 0.0039 24.9 6.8 32 245-276 26-57 (78)
85 PRK14127 cell division protein 34.4 1.1E+02 0.0024 27.6 5.8 37 246-282 32-68 (109)
86 PF08317 Spc7: Spc7 kinetochor 34.2 1.6E+02 0.0035 30.6 7.9 8 178-185 127-134 (325)
87 PF04420 CHD5: CHD5-like prote 33.9 1.6E+02 0.0034 27.8 7.1 57 242-298 45-106 (161)
88 PRK06798 fliD flagellar cappin 33.9 1.4E+02 0.0029 32.8 7.5 10 273-282 412-421 (440)
89 PF11559 ADIP: Afadin- and alp 33.2 3.8E+02 0.0083 24.5 9.9 31 246-276 61-91 (151)
90 PRK08032 fliD flagellar cappin 33.1 1.4E+02 0.0031 32.6 7.6 28 255-282 410-437 (462)
91 PF11853 DUF3373: Protein of u 32.8 39 0.00084 37.7 3.2 36 243-286 24-59 (489)
92 PF11414 Suppressor_APC: Adeno 32.5 1.5E+02 0.0033 25.5 6.2 44 241-284 4-47 (84)
93 PF08826 DMPK_coil: DMPK coile 32.5 2.7E+02 0.0059 22.7 7.2 40 242-281 16-55 (61)
94 PRK10884 SH3 domain-containing 31.7 1.4E+02 0.003 29.6 6.6 16 263-278 137-152 (206)
95 PRK14160 heat shock protein Gr 31.7 3.4E+02 0.0073 27.2 9.3 42 242-283 59-100 (211)
96 PF07676 PD40: WD40-like Beta 31.3 22 0.00047 24.9 0.7 23 137-159 4-26 (39)
97 COG3159 Uncharacterized protei 31.2 82 0.0018 31.7 4.8 76 198-300 12-87 (218)
98 PLN02320 seryl-tRNA synthetase 31.0 1.8E+02 0.004 32.6 8.0 51 241-291 104-163 (502)
99 PF08614 ATG16: Autophagy prot 30.9 3E+02 0.0064 26.5 8.6 8 304-311 177-184 (194)
100 cd00632 Prefoldin_beta Prefold 30.6 1.6E+02 0.0035 25.5 6.1 43 242-284 61-103 (105)
101 PF10234 Cluap1: Clusterin-ass 30.3 5.2E+02 0.011 26.9 10.6 14 299-312 245-258 (267)
102 PF11853 DUF3373: Protein of u 30.2 46 0.001 37.1 3.3 22 245-266 32-53 (489)
103 TIGR02132 phaR_Bmeg polyhydrox 29.8 3.1E+02 0.0067 27.1 8.4 42 269-310 111-152 (189)
104 PF05064 Nsp1_C: Nsp1-like C-t 29.6 24 0.00053 31.6 0.9 36 253-295 59-94 (116)
105 PLN02678 seryl-tRNA synthetase 29.5 2.1E+02 0.0045 31.7 8.0 23 240-262 43-65 (448)
106 TIGR00219 mreC rod shape-deter 29.5 1.6E+02 0.0034 30.3 6.8 22 245-266 67-88 (283)
107 PF07888 CALCOCO1: Calcium bin 29.4 2E+02 0.0044 32.7 8.0 9 163-171 76-84 (546)
108 COG5481 Uncharacterized conser 29.3 3.2E+02 0.007 22.6 7.0 27 252-278 5-31 (67)
109 PRK14143 heat shock protein Gr 29.3 3.7E+02 0.0081 27.3 9.3 42 242-283 65-106 (238)
110 PF09787 Golgin_A5: Golgin sub 28.9 2E+02 0.0044 31.9 8.0 40 244-283 274-313 (511)
111 PF08781 DP: Transcription fac 28.9 2.5E+02 0.0054 26.6 7.4 9 305-313 34-42 (142)
112 COG1382 GimC Prefoldin, chaper 28.7 1.9E+02 0.0042 26.6 6.4 38 245-282 71-108 (119)
113 PF07106 TBPIP: Tat binding pr 28.7 2.6E+02 0.0057 26.1 7.7 32 245-276 73-104 (169)
114 PF10211 Ax_dynein_light: Axon 28.6 2.9E+02 0.0062 26.8 8.1 10 178-187 68-77 (189)
115 PF04977 DivIC: Septum formati 28.3 2.9E+02 0.0063 21.9 6.9 33 245-277 18-50 (80)
116 PF10226 DUF2216: Uncharacteri 28.2 3.2E+02 0.007 27.2 8.3 22 244-265 55-76 (195)
117 PF12718 Tropomyosin_1: Tropom 28.2 4.4E+02 0.0096 24.5 8.9 36 246-281 23-58 (143)
118 COG1345 FliD Flagellar capping 28.1 2.5E+02 0.0054 31.4 8.4 54 240-296 425-478 (483)
119 PRK00888 ftsB cell division pr 28.0 1.6E+02 0.0035 26.0 5.8 7 303-309 65-71 (105)
120 PF04012 PspA_IM30: PspA/IM30 27.9 3.2E+02 0.0069 26.4 8.3 42 251-292 98-139 (221)
121 PF00170 bZIP_1: bZIP transcri 27.8 3E+02 0.0066 21.7 6.8 11 255-265 37-47 (64)
122 PF13874 Nup54: Nucleoporin co 27.8 3.6E+02 0.0078 24.8 8.2 40 245-284 45-84 (141)
123 COG5613 Uncharacterized conser 27.7 3.3E+02 0.0073 29.6 8.8 44 241-284 327-370 (400)
124 KOG4571 Activating transcripti 27.4 2.4E+02 0.0052 29.7 7.6 32 252-283 249-280 (294)
125 PF07798 DUF1640: Protein of u 27.2 3.1E+02 0.0067 26.1 7.9 16 179-194 5-20 (177)
126 PHA02562 46 endonuclease subun 26.7 3.7E+02 0.008 29.4 9.4 54 254-307 361-420 (562)
127 PF14817 HAUS5: HAUS augmin-li 26.7 3.9E+02 0.0084 31.0 9.8 45 243-287 85-129 (632)
128 PF06156 DUF972: Protein of un 26.5 1.7E+02 0.0037 26.2 5.6 21 246-266 10-30 (107)
129 PRK14148 heat shock protein Gr 26.2 5.2E+02 0.011 25.6 9.4 44 240-283 36-79 (195)
130 PF12325 TMF_TATA_bd: TATA ele 25.8 5.2E+02 0.011 23.6 9.7 44 242-285 21-64 (120)
131 PRK09973 putative outer membra 25.5 2.9E+02 0.0063 24.1 6.6 43 242-284 29-71 (85)
132 PRK06664 fliD flagellar hook-a 25.4 2.6E+02 0.0057 32.4 8.2 55 253-310 602-656 (661)
133 PF06216 RTBV_P46: Rice tungro 25.4 1.7E+02 0.0036 30.5 6.0 43 241-283 68-110 (389)
134 COG2433 Uncharacterized conser 25.1 2.4E+02 0.0053 32.6 7.7 43 241-283 426-468 (652)
135 PF01920 Prefoldin_2: Prefoldi 24.7 2.6E+02 0.0057 23.4 6.3 41 242-282 60-100 (106)
136 PRK15396 murein lipoprotein; P 24.6 4.5E+02 0.0097 22.5 8.0 44 241-284 29-72 (78)
137 PRK07737 fliD flagellar cappin 24.4 2.6E+02 0.0057 31.1 7.8 27 255-281 445-471 (501)
138 PF04111 APG6: Autophagy prote 24.2 5.1E+02 0.011 27.1 9.5 15 467-481 285-299 (314)
139 PRK00295 hypothetical protein; 23.5 4E+02 0.0087 21.8 6.9 44 242-285 10-53 (68)
140 TIGR02894 DNA_bind_RsfA transc 23.3 5.3E+02 0.011 25.0 8.5 34 255-288 101-134 (161)
141 PF14817 HAUS5: HAUS augmin-li 23.3 4.4E+02 0.0094 30.6 9.4 42 252-293 80-121 (632)
142 PF00038 Filament: Intermediat 23.1 6.1E+02 0.013 25.6 9.7 42 247-288 212-253 (312)
143 PF07200 Mod_r: Modifier of ru 23.0 3.3E+02 0.0073 24.7 7.1 38 241-278 52-89 (150)
144 PF12718 Tropomyosin_1: Tropom 23.0 6.2E+02 0.013 23.5 8.9 44 254-297 17-60 (143)
145 PF10224 DUF2205: Predicted co 22.9 4.9E+02 0.011 22.3 7.8 25 244-268 23-47 (80)
146 PRK00846 hypothetical protein; 22.8 3.7E+02 0.008 23.0 6.7 8 289-296 40-47 (77)
147 PF10805 DUF2730: Protein of u 22.8 3.8E+02 0.0083 23.6 7.1 28 259-286 66-93 (106)
148 PRK03947 prefoldin subunit alp 22.7 3.2E+02 0.0069 24.7 6.8 46 241-286 91-136 (140)
149 PF02388 FemAB: FemAB family; 22.7 5.2E+02 0.011 27.8 9.5 56 241-296 239-297 (406)
150 PRK06664 fliD flagellar hook-a 22.7 2.4E+02 0.0053 32.7 7.3 26 262-287 604-629 (661)
151 PF14662 CCDC155: Coiled-coil 22.6 3.7E+02 0.008 26.7 7.6 43 241-283 85-127 (193)
152 PRK14163 heat shock protein Gr 22.3 5.5E+02 0.012 25.9 8.8 41 243-283 39-79 (214)
153 PF12308 Noelin-1: Neurogenesi 22.3 2.7E+02 0.0059 25.0 5.9 25 267-291 70-94 (101)
154 PF05377 FlaC_arch: Flagella a 22.1 4.3E+02 0.0092 21.4 6.5 39 255-293 4-42 (55)
155 TIGR02338 gimC_beta prefoldin, 21.7 3.7E+02 0.008 23.6 6.8 41 243-283 66-106 (110)
156 PRK15422 septal ring assembly 21.7 5.3E+02 0.011 22.3 9.0 35 242-276 9-43 (79)
157 PF10018 Med4: Vitamin-D-recep 21.5 5.8E+02 0.013 24.5 8.7 47 252-299 10-56 (188)
158 PF09726 Macoilin: Transmembra 21.5 2.7E+02 0.0058 32.5 7.4 31 243-273 417-447 (697)
159 KOG3091 Nuclear pore complex, 21.4 4.4E+02 0.0095 29.8 8.6 31 257-287 361-391 (508)
160 PF08172 CASP_C: CASP C termin 21.4 2E+02 0.0043 29.3 5.7 37 242-278 84-120 (248)
161 PF15035 Rootletin: Ciliary ro 21.3 4.4E+02 0.0094 25.7 7.8 41 242-282 86-126 (182)
162 PF02994 Transposase_22: L1 tr 21.3 1.4E+02 0.0031 31.9 4.8 48 243-290 111-162 (370)
163 smart00338 BRLZ basic region l 21.1 4.1E+02 0.0089 20.9 6.4 30 242-271 31-60 (65)
164 PRK08032 fliD flagellar cappin 21.1 3.4E+02 0.0074 29.8 7.8 32 256-287 404-435 (462)
165 PRK13729 conjugal transfer pil 20.9 2E+02 0.0042 32.3 5.9 33 262-294 80-112 (475)
166 PRK05892 nucleoside diphosphat 20.9 4.3E+02 0.0094 25.0 7.5 20 241-260 15-34 (158)
167 KOG0639 Transducin-like enhanc 20.9 4.4E+02 0.0096 30.1 8.5 43 238-280 17-59 (705)
168 PF12777 MT: Microtubule-bindi 20.9 5.9E+02 0.013 26.7 9.2 42 246-287 237-278 (344)
169 PF08614 ATG16: Autophagy prot 20.8 5.3E+02 0.011 24.8 8.3 14 276-289 162-175 (194)
170 PRK04406 hypothetical protein; 20.6 4E+02 0.0088 22.3 6.5 10 288-297 37-46 (75)
171 PF03961 DUF342: Protein of un 20.5 4.8E+02 0.01 28.3 8.8 23 244-266 334-356 (451)
172 PF03904 DUF334: Domain of unk 20.3 5.8E+02 0.013 26.1 8.5 40 244-283 43-82 (230)
173 PF10146 zf-C4H2: Zinc finger- 20.3 6.3E+02 0.014 25.5 8.9 54 246-299 34-87 (230)
174 PHA01750 hypothetical protein 20.3 3.2E+02 0.007 23.0 5.6 30 255-284 39-68 (75)
175 PRK07737 fliD flagellar cappin 20.2 2.9E+02 0.0063 30.8 7.1 25 263-287 446-470 (501)
176 PRK14140 heat shock protein Gr 20.2 7.3E+02 0.016 24.5 9.1 40 244-283 37-76 (191)
177 PF04156 IncA: IncA protein; 20.2 6.2E+02 0.013 23.7 8.5 10 244-253 109-118 (191)
178 COG1730 GIM5 Predicted prefold 20.0 5.5E+02 0.012 24.3 7.9 44 241-284 91-134 (145)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=6.2e-44 Score=357.49 Aligned_cols=187 Identities=42% Similarity=0.786 Sum_probs=171.3
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc--CCcceEecC
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH--SNRWEFANE 203 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~--~~~~eF~h~ 203 (490)
++++|+.|||.||+||.++++|+|+++|++|||||+..|++.+||+||||+||+|||||||+||||||+ +++|||+|+
T Consensus 11 ~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~ 90 (304)
T KOG0627|consen 11 GPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNP 90 (304)
T ss_pred CCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecCh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCcCCccccchhhcccCCCCCCCCC--Ccc--------cccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 204 KFRGGKKHLLKNIKRRSRFNKAQDG--TVT--------LACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQ 273 (490)
Q Consensus 204 ~F~RG~~~LL~~IkRk~~~~~~q~~--~~~--------~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~Q 273 (490)
+|+||+++||++|+||+...+.... ... ..+....+..+..++.+|+++++.|+.|+.+||+++..+..+
T Consensus 91 ~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~ 170 (304)
T KOG0627|consen 91 CFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRAT 170 (304)
T ss_pred hHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999988654321 110 112334566789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 011260 274 MSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKR 312 (490)
Q Consensus 274 L~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq~~ 312 (490)
++.+.+++...+++|++|+.|++++++.|.|+.++.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 171 IQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999998853
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=5e-34 Score=245.38 Aligned_cols=93 Identities=54% Similarity=1.044 Sum_probs=81.7
Q ss_pred cHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCcccccCCc---------ce
Q 011260 129 PFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNR---------WE 199 (490)
Q Consensus 129 ~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~~~~---------~e 199 (490)
.||.|||+||+||.++++|+|+++|++|||+|+..|++.|||+||+|+||+||+||||+|||+|+.... |+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 599999999999999999999999999999999999999999999999999999999999999997532 99
Q ss_pred EecCCCcCCccccchhhcccCC
Q 011260 200 FANEKFRGGKKHLLKNIKRRSR 221 (490)
Q Consensus 200 F~h~~F~RG~~~LL~~IkRk~~ 221 (490)
|+|++|+||++++|.+|+||++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=8.7e-34 Score=245.78 Aligned_cols=94 Identities=57% Similarity=1.185 Sum_probs=90.7
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCcccccC----------
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHS---------- 195 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~~---------- 195 (490)
++|.|+.|||.||+|+.+++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -CcceEecCCCcCCccccchhhccc
Q 011260 196 -NRWEFANEKFRGGKKHLLKNIKRR 219 (490)
Q Consensus 196 -~~~eF~h~~F~RG~~~LL~~IkRk 219 (490)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 679999999999999999999996
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.97 E-value=1.5e-32 Score=274.48 Aligned_cols=146 Identities=34% Similarity=0.659 Sum_probs=112.4
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc-C---------
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH-S--------- 195 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~-~--------- 195 (490)
.++.|++|||.||++|++..+|+|+++|+||||+|++.|.+.|||+||||+||+|||||||+||||||. .
T Consensus 9 ~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~ 88 (282)
T COG5169 9 QPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNE 88 (282)
T ss_pred chhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccch
Confidence 457999999999999999999999999999999999999999999999999999999999999999997 2
Q ss_pred CcceEecCCCcCCccccchhhcccCCCCCCCCCCc-ccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 196 NRWEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTV-TLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQM 274 (490)
Q Consensus 196 ~~~eF~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~-~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL 274 (490)
+.|+|.|++|++|..++|++|+|++.......... +..|.. . .+++.+-..+..+..++-+|....+.++..+
T Consensus 89 ~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~----~--~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~ 162 (282)
T COG5169 89 NVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMM----N--IEVENIILPQSELYNSLSSLSNVNQTLLLYL 162 (282)
T ss_pred hheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCcccc----c--hhhhhhhchhcccCcchhHHhhhhHHHhhhh
Confidence 24999999999999999999999776544311111 111110 0 3455554555555555555555555544444
Q ss_pred HHH
Q 011260 275 SAV 277 (490)
Q Consensus 275 ~~m 277 (490)
..+
T Consensus 163 ~~l 165 (282)
T COG5169 163 NEL 165 (282)
T ss_pred ccc
Confidence 443
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=94.73 E-value=0.023 Score=48.52 Aligned_cols=58 Identities=21% Similarity=0.422 Sum_probs=45.6
Q ss_pred HHHHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhccc--ccCCCChhHHHHHhhccC
Q 011260 131 LRKIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLPK--YFKHKNFSSFIRQLNTYG 189 (490)
Q Consensus 131 l~KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~--yFKhsnfsSFvRQLN~YG 189 (490)
..=|.++|.|+++.++|+|.. .+.-|.|.|++++++ +... --..-+|.++-|-|..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~-lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVAR-LWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHH-HHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHH-HHHHHcCCccccHHHHHHHHHHHh
Confidence 344678899999999999998 999999999999986 3322 223467899999998774
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=92.07 E-value=0.25 Score=42.71 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=44.0
Q ss_pred HHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccC
Q 011260 133 KIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYG 189 (490)
Q Consensus 133 KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YG 189 (490)
=|.++|.||++.++|+|.. ++.-|.+.|+++.++.=-. +-=..-||..+-|-|..|-
T Consensus 7 FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy 65 (87)
T smart00413 7 FLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYY 65 (87)
T ss_pred HHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998 6889999999988763211 1113567888888888774
No 7
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=90.20 E-value=0.82 Score=41.76 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 011260 254 KTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKR 312 (490)
Q Consensus 254 ~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq~~ 312 (490)
++.+.||..|++.+..+...+.+|.+++..+++.+++|..+-||++++ |...+.+.
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkC 57 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhc
Confidence 456789999999999999999999999999999999999999999986 66666654
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=87.09 E-value=0.8 Score=44.29 Aligned_cols=62 Identities=13% Similarity=0.297 Sum_probs=46.3
Q ss_pred CCcHHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhccccc-CCCChhHHHHHhhcc
Q 011260 127 PPPFLRKIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLPKYF-KHKNFSSFIRQLNTY 188 (490)
Q Consensus 127 ~~~Fl~KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~yF-KhsnfsSFvRQLN~Y 188 (490)
.-...+=|-++|.|+.+.++|.|.. +|--|.+.|+++-++.---+=- .+-||.-.-|-|..|
T Consensus 68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 3445555667889999999999998 7889999999998874322212 256777777877766
No 9
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.02 E-value=7.1 Score=32.57 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
|..|++.||.++..|..+...|+++.+.+..+..+..+||+++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777666666666666666666666666666666554
No 10
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.20 E-value=4.9 Score=34.31 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLK-------LRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~k-------LrQqQq~~~~QL~~meeRl~~ 283 (490)
|..||+.||.++..|..|+.. |+++++.++.+...-++||+.
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888877 555555555555555555544
No 11
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=82.53 E-value=5.3 Score=39.07 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=36.7
Q ss_pred ecCCCcCCccccchhhcccCCCCCCCCCCcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 201 ANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAER 280 (490)
Q Consensus 201 ~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeR 280 (490)
.||.|...+++||..|+=..+ + ++. + ......+..||++++.++.++..|-+.
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~----~-~~a----v------------------SL~erQ~~~LR~~~~~L~~~l~~Li~~ 69 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHP----S-GGA----V------------------SLVERQLERLRERNRQLEEQLEELIEN 69 (225)
T ss_dssp -----------------------------H----H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCC----C-CCc----c------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998874221 1 111 1 122344667777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchh
Q 011260 281 IRCAECKQQQMLNFFAKIAKYPNF 304 (490)
Q Consensus 281 l~~~E~kQqQml~FLakalqnP~F 304 (490)
-+..++.++++..+..++++-.++
T Consensus 70 Ar~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 70 ARENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--SH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCH
Confidence 888888888888888888775543
No 12
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.70 E-value=9.1 Score=32.24 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAE 279 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~mee 279 (490)
+..||+.||..++.|..|+..++++...+..+-..+.+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889998888888888877776666555444443
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.51 E-value=13 Score=37.11 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAK 300 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalq 300 (490)
.+..+++.|+++...|...+.++..+......++..+++++...+...+.|.-+|.+++.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666677777777777777777777777777654
No 14
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.90 E-value=21 Score=32.58 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDES---LCQMSAVAERIRCAECKQQQMLNFFA 296 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~---~~QL~~meeRl~~~E~kQqQml~FLa 296 (490)
.+..++.+|...+..+..||++|-.+...+ ..++..++..+..++.|.+.++..|.
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666677777777777777766444 33455666777777776666665553
No 15
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.08 E-value=24 Score=33.91 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKI 298 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLaka 298 (490)
...++.++..|..|+..|++++..+..++..+..++..++..-+.|+..+-++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888888888888888888888888777777777776655
No 16
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=69.65 E-value=35 Score=32.02 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKI 298 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLaka 298 (490)
+..+++.+-...+.|..|+..++.+...+...++.+..|+...|..+.-+..+|..+
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555666666666677777777777777777778888888888777766666555543
No 17
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=68.65 E-value=36 Score=28.39 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFA 296 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLa 296 (490)
.|..|-+.|.+....+..-|-+||.+......++..+..++...+.....+-.+|.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666766666777777788888887777777777777777666655555443
No 18
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.95 E-value=24 Score=26.97 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
++.+-+.||+.-..|..+-.+|.++.+.+..++..+..++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677788888888888888888877777777776655
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.37 E-value=32 Score=28.42 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLak 297 (490)
+..|++|=.-...|..|-..|++++.....+=..+.+++...-.|...|++=|..
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444444444455544444444444555555555555555555543
No 20
>PRK10963 hypothetical protein; Provisional
Probab=58.96 E-value=42 Score=33.11 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=42.3
Q ss_pred ecCCCcCCccccchhhcccCCCCCCCCCCcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 201 ANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAER 280 (490)
Q Consensus 201 ~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeR 280 (490)
.||.|.-.+++||..|+=..+ +.++ +.. .+-+ +..||+++..++.++..|-+.
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~----~~ga-----VSL----~ErQ--------------~~~LR~r~~~Le~~l~~Li~~ 66 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHP----VRGT-----VSL----VEWQ--------------MARQRNHIHVLEEEMTLLMEQ 66 (223)
T ss_pred HCchHHhhCHHHHHhccCCCC----CCCe-----ecH----HHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999997764222 1111 111 1222 444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q 011260 281 IRCAECKQQQMLNFFAKIAKYP 302 (490)
Q Consensus 281 l~~~E~kQqQml~FLakalqnP 302 (490)
-+..+...+++.....+++.-.
T Consensus 67 A~~Ne~l~~~~~~l~l~Ll~a~ 88 (223)
T PRK10963 67 AIANEDLFYRLLPLQSRLAAAD 88 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 5555555666655555555443
No 21
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.92 E-value=48 Score=38.56 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAK 300 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalq 300 (490)
+...+..|+...+.-..++..++++...+......+.+|+.....+|+.++.=+.++++
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666677777777777766777788888888888877766655543
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.89 E-value=1.1e+02 Score=25.37 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
.|-..|+.+...+..|-..|.++......++.+|-.|+..+|+
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3344444555555555566666666777777788888877764
No 23
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.45 E-value=63 Score=26.07 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
|..+|..|..+...|..+|..||...+..+.+-.+-.+||..
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666677777776666666666666666654
No 24
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.36 E-value=50 Score=36.67 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMS 275 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~ 275 (490)
+..+++.|.++++.|.+|..+||+....+..+++
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4455555555666666666666665555555543
No 25
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.30 E-value=1.1e+02 Score=30.52 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKI 298 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLaka 298 (490)
..|-..|..+...|..|+..|+.++..+..++...++++...++++.++-.....+
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555566666666666655555544444
No 26
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.10 E-value=57 Score=34.06 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
.+..+++.|+.+...|.+|+..|.++...+..++..++.....++.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888889988888888888888887766655543
No 27
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=54.39 E-value=1.4e+02 Score=25.62 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRN-DQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 245 Ele~LKr-Dq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
+++++.+ .+..|..++..|+.....+..++...++....++.
T Consensus 9 d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~ 51 (80)
T PF10224_consen 9 DIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLES 51 (80)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454433 46778888888888777777777666655554443
No 28
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=54.18 E-value=62 Score=32.15 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQM 274 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL 274 (490)
+..+.++|...+..|..|+..|+++|+.+.++-
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er 68 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERER 68 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888889999999988888776543
No 29
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.60 E-value=65 Score=33.10 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR-----CAECKQQQMLNF 294 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~-----~~E~kQqQml~F 294 (490)
.++.+|..|-.++..|..|-..||.+.+.+..+-..+..++. -++-+|+++++-
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 467788888888899999999999988888777665544443 244555555543
No 30
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=52.36 E-value=1.3e+02 Score=24.59 Aligned_cols=56 Identities=5% Similarity=0.120 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLak 297 (490)
+...+.+++...+.+...+..|.+.......++.++.++|..++..+.=++.++.-
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777888888888888888888888888888877776655554443
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=52.26 E-value=50 Score=38.33 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=7.4
Q ss_pred CcHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQK 254 (490)
Q Consensus 241 gLe~Ele~LKrDq~ 254 (490)
.|+.+|++||.|..
T Consensus 422 rLE~dvkkLraeLq 435 (697)
T PF09726_consen 422 RLEADVKKLRAELQ 435 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555666555433
No 32
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.75 E-value=48 Score=28.61 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=27.5
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLKLRQQ---QDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~kLrQq---Qq~~~~QL~~meeRl~~~E~k 287 (490)
..+..+++.|+.+++.+..+|..+... ...+..++..+.+++...+..
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888777765552 233333444444444444333
No 33
>PRK09039 hypothetical protein; Validated
Probab=51.75 E-value=90 Score=32.97 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 253 QKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 253 q~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
...|.+||..||.|...+...|...+++....+.+...+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333
No 34
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.29 E-value=36 Score=31.86 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDES 270 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~ 270 (490)
++.++..|+.+...|..++..|+.+...+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.26 E-value=1.5e+02 Score=24.86 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
|+..|.++=.....|..|+..|+.+...+..+...+.+....
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444555666666666666655555444444443333
No 36
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.60 E-value=1.1e+02 Score=24.92 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 251 NDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQ 289 (490)
Q Consensus 251 rDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQq 289 (490)
+-+..|..|+.+.+..+..+..+|+..+.|.+.++....
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777776677666666666554433
No 37
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.15 E-value=77 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
+.++..|-.+...|...+..|-.++..+..+..+|.+||...+.
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444455555555555555555555566666666655543
No 38
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=49.36 E-value=42 Score=29.70 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAE 279 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~mee 279 (490)
....++++...+.+|+.+|++++..+..++..++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45556666677777777777777666666666543
No 39
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.71 E-value=9.7 Score=36.64 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=10.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAE 285 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E 285 (490)
|+.|| .+++.|..++++||.+...++.++ .+.+|+...+
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~ 57 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKAN 57 (166)
T ss_dssp HHHHH----HHHHHHHHCH-------------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Confidence 56666 467788888888888888888888 7777766543
No 40
>PRK11637 AmiB activator; Provisional
Probab=48.21 E-value=1.3e+02 Score=32.35 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLak 297 (490)
..++..+......+..+|..+.++...+..++..++.++...+....+++..+.+
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555555555554444444444443333
No 41
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.89 E-value=1.3e+02 Score=33.62 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.|-.++.++++++..|..+-.+|+.+++.++.+-.++..||+.
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3667888888888899988889999988888888887777754
No 42
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.40 E-value=84 Score=35.84 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011260 248 TLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKY 301 (490)
Q Consensus 248 ~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalqn 301 (490)
.|++.++.-.+++..++++...+...-..+++|+....-+|.-++.-+.++++.
T Consensus 592 ~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 592 LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 344444444445555555555555555556666666666666666555555443
No 43
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.49 E-value=74 Score=32.30 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLak 297 (490)
.|...|..|+++...++.++..+..+|+.+.+||..+-.=|-+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666666666666666665444433
No 44
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=45.19 E-value=1.3e+02 Score=31.00 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
+|..|+..++.+++.|..|+..+-.||++++.-|..+|..+..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999887755
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.39 E-value=1.4e+02 Score=31.08 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
.+++.+|.+...+..+|..+++....+..++..++.++.....+.+++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555544444433
No 46
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.18 E-value=1.6e+02 Score=25.06 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQ 289 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQq 289 (490)
+..+.+--.-...|+.||..|+.+...+.++.+.........+++-+
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 33343333445667788888888777777766655555444444433
No 47
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.88 E-value=1.4e+02 Score=30.14 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
+..|+..++.....|..++..|+.+...+..++..++.++...
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 4455666666666666666666666666666666665555443
No 48
>PRK11637 AmiB activator; Provisional
Probab=42.55 E-value=1.4e+02 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQ 273 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~Q 273 (490)
.++..+..+...+..+|..++.+...+..+
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333333
No 49
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=42.32 E-value=1.9e+02 Score=26.20 Aligned_cols=54 Identities=20% Similarity=0.163 Sum_probs=38.5
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLN 293 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~ 293 (490)
.+++.+++..|..+..|.++-..|+..++.+..|-.....|+..++.+...++.
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888777777777777777777777777777777776555444433
No 50
>smart00338 BRLZ basic region leucin zipper.
Probab=42.25 E-value=64 Score=25.55 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011260 256 LRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 256 L~~El~kLrQqQq~~~~QL~~me 278 (490)
|..++..|..+...+..++..|+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333
No 51
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.95 E-value=1.4e+02 Score=27.24 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQML 292 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml 292 (490)
..+.+.|-+.+-.+..++..+|.+......++..++.++...+++++.+.
T Consensus 40 ~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 40 LAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454555555666677777777777777777777777776666653
No 52
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.42 E-value=1.8e+02 Score=30.29 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQ 267 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQ 267 (490)
|++++.+++..+.-|..+.++|+-++
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444444444444333
No 53
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.36 E-value=1.4e+02 Score=30.98 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.+..++.+++++...+..++..+++||
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444
No 54
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.04 E-value=1.5e+02 Score=27.57 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQ 290 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQ 290 (490)
++..+....+....|..|+.+....++....+++.|+..++..+..-..
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556677777777666666666666666666665444333
No 55
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=40.81 E-value=71 Score=28.08 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 011260 257 RLEMLKLRQQQDESLCQMSAVAERIRCAE-CKQQQMLNFFAKIAKYPNFVQQLVHKRK 313 (490)
Q Consensus 257 ~~El~kLrQqQq~~~~QL~~meeRl~~~E-~kQqQml~FLakalqnP~FlqqLvq~~~ 313 (490)
..|+.+|++-......+|..+.+++...- .....|+..-..++++|.|+........
T Consensus 34 ~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~L~D~~l~~~v~~~I~ 91 (123)
T PF05524_consen 34 EAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMMLEDPELIDEVEELIR 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcCHhHHHHHHHHHh
Confidence 34555555555555555555555543321 2234788889999999999998877653
No 56
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.56 E-value=1.5e+02 Score=30.06 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 250 RNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 250 KrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
..+.+.|+.||.+||-+.+.+..+|..|.+|-+.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=40.25 E-value=1.8e+02 Score=30.56 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FL 295 (490)
.++.++|.+...+..++...+++......++..++.+|.....+.+++..=+
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566666666666666666666666655554444444333
No 58
>PRK09039 hypothetical protein; Validated
Probab=40.11 E-value=1.5e+02 Score=31.26 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
++...+..-.....+|..|++|...++.|+..++..|...|.+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555555555555555555444
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.69 E-value=2.1e+02 Score=26.87 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIA 299 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakal 299 (490)
.+..|+..+.+....+..++..++..++.....+...+++++..+.....+..-+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777777776666667777777777666666655555544
No 60
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.56 E-value=55 Score=36.68 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 011260 271 LCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLV 309 (490)
Q Consensus 271 ~~QL~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLv 309 (490)
...+..+.+++...+..|..|...|..+-+.-.-...-+
T Consensus 378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l 416 (560)
T PF06160_consen 378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKL 416 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666677777777777776655443333333
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.49 E-value=2e+02 Score=29.39 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQ 289 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQq 289 (490)
.|..|+..+++....|..|+..|...++.+..++..+..++..++....
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777777777777777776655433
No 62
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.39 E-value=2.5e+02 Score=26.39 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
++..++.++..|..++.+++.+...+......+...|+..
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 63
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.35 E-value=1.6e+02 Score=33.01 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FL 295 (490)
+++-+.....|.++|..||++.+.+..+.+.++++|..+|...+++-.=+
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334445677888888888777777777788888877776665554443
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.06 E-value=3.2e+02 Score=25.00 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=7.9
Q ss_pred HHhhccCccccc
Q 011260 183 RQLNTYGFKKIH 194 (490)
Q Consensus 183 RQLN~YGF~Kv~ 194 (490)
.+|-.+||-...
T Consensus 9 ~~L~s~G~~~~~ 20 (151)
T PF11559_consen 9 QQLLSRGYPSDG 20 (151)
T ss_pred HHHHHCCCCCCC
Confidence 457778886553
No 65
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.99 E-value=1.4e+02 Score=27.96 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 256 LRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFA 296 (490)
Q Consensus 256 L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLa 296 (490)
|.++-..|.||.+.+..++..|...+...+.|.+++..|-.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334444444444444455555555555555566665543
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.70 E-value=99 Score=30.60 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=18.5
Q ss_pred cCccccc--CCcceEecCCCcCCccccchhh
Q 011260 188 YGFKKIH--SNRWEFANEKFRGGKKHLLKNI 216 (490)
Q Consensus 188 YGF~Kv~--~~~~eF~h~~F~RG~~~LL~~I 216 (490)
.||.+|. .++--|.|..|....|..-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 4677774 3455677777777776654444
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.51 E-value=1.2e+02 Score=30.84 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
+..++++++++...+..++..++.|...+...++.+.+|+...+.+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666555555566665555554444
No 68
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=37.18 E-value=1.5e+02 Score=23.89 Aligned_cols=31 Identities=10% Similarity=0.265 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 251 NDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 251 rDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.+...+...+..+|.+++.+...+..+++.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666555
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=36.87 E-value=2.2e+02 Score=32.38 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQD-------ESLCQMSAVAERIRCAE 285 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq-------~~~~QL~~meeRl~~~E 285 (490)
++.++.+||.++..|..+|..+|.+.. ...++++.|.++|..+.
T Consensus 167 le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 167 LEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555555555554322 22334444555555544
No 70
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=36.77 E-value=1.8e+02 Score=33.41 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=49.0
Q ss_pred CCCcCCccccchhhcccCCCCCCCCCCccccccc--c-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 203 EKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVD--S-AKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAE 279 (490)
Q Consensus 203 ~~F~RG~~~LL~~IkRk~~~~~~q~~~~~~a~~e--~-~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~mee 279 (490)
..|..-+..|++.|+||.+.+.+.+ .|.. + .-..|+.+++.|+++++.|..|-..+......+..++..|-
T Consensus 479 ~~lte~QLslIrDIRRRgKNkvAAQ-----nCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~- 552 (604)
T KOG3863|consen 479 YKLTEEQLSLIRDIRRRGKNKVAAQ-----NCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY- 552 (604)
T ss_pred cccCHHHHHHhhccccccccchhcc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3455567888899998855432211 1110 0 01245666666666666555555555544444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 011260 280 RIRCAECKQQQMLNFFAKIAKYPNFVQQLVHKR 312 (490)
Q Consensus 280 Rl~~~E~kQqQml~FLakalqnP~FlqqLvq~~ 312 (490)
+.++.-|+.==.+|.-..++..+.
T Consensus 553 ---------~~Vf~~lrd~eg~~~sp~~yalq~ 576 (604)
T KOG3863|consen 553 ---------QEVFQQLRDEEGNPYSPSQYALQQ 576 (604)
T ss_pred ---------HHHHHHHhccccCccCHHHHHHHh
Confidence 233444444445566666776654
No 71
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=36.48 E-value=1.6e+02 Score=31.74 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSA--VAERIRCAE 285 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~--meeRl~~~E 285 (490)
.-.|+.++..|.+|...|+.+...+++++.. +.+|+..++
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~d 75 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETND 75 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 3344444444444444444444444444442 455555443
No 72
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=36.46 E-value=1.1e+02 Score=29.69 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.+.|-++|+.+...+..||..|||-...-..+...+.++|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3456677777777777777777776554444444444443
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.36 E-value=1.1e+02 Score=24.37 Aligned_cols=11 Identities=9% Similarity=0.658 Sum_probs=6.6
Q ss_pred cCchhHHHHHH
Q 011260 300 KYPNFVQQLVH 310 (490)
Q Consensus 300 qnP~FlqqLvq 310 (490)
++|.++..+..
T Consensus 52 ~~~~~ie~~AR 62 (80)
T PF04977_consen 52 NDPDYIEKVAR 62 (80)
T ss_pred CCHHHHHHHHH
Confidence 46666666555
No 74
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.26 E-value=1.9e+02 Score=25.53 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 250 RNDQKTLRLEMLKL--RQQQDESLCQMSAVAERIRCAECKQQQ 290 (490)
Q Consensus 250 KrDq~~L~~El~kL--rQqQq~~~~QL~~meeRl~~~E~kQqQ 290 (490)
.+-...+..++..| ++..+.+...|..|+.+++.++.+.+.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555 555555555555555555555554444
No 75
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=36.21 E-value=2.3e+02 Score=32.26 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV------------AERIRCAECKQQQMLNFFAKIAKYPNFVQQ 307 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m------------eeRl~~~E~kQqQml~FLakalqnP~Flqq 307 (490)
+....|+..|-.+.....+-...||.|.++..|+|... .+=++.....||+.+.||...+++|....-
T Consensus 314 FRdktei~~L~eqLt~vr~ya~aLRaq~HEfmNkLhtI~GLlql~~yd~a~~~I~~~~~~qq~~~~~l~~~i~~~~lAg~ 393 (537)
T COG3290 314 FRDKTEIKKLTEQLTGVRQYAEALRAQSHEFMNKLHTILGLLQLGEYDDALDYIQQESEEQQELIDSLSEKIKDPVLAGF 393 (537)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhHHHHHHhcccHHHHHH
Confidence 45677888888888888888889999999999987643 233444555689999999999999877777
Q ss_pred HHHHHHhhcccc
Q 011260 308 LVHKRKQQRELH 319 (490)
Q Consensus 308 Lvq~~~~~~el~ 319 (490)
|+-|..+.+|+.
T Consensus 394 LlgK~~rArElg 405 (537)
T COG3290 394 LLGKISRARELG 405 (537)
T ss_pred HHhHHHHHHHcC
Confidence 777766677764
No 76
>PF14282 FlxA: FlxA-like protein
Probab=35.90 E-value=1.9e+02 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQ 265 (490)
....|+.|++....|..+|..|..
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 477899999999999988888877
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.84 E-value=1.8e+02 Score=31.96 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
.|+.+|..++.+...+..++.........+..++..++.++...
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 45556666666666666665555555555555555555554443
No 78
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=35.81 E-value=1.2e+02 Score=28.47 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 247 ETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 247 e~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
..|..++..|++||.+|++++..+..++.+++.++..+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777666554
No 79
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=35.72 E-value=1.2e+02 Score=29.42 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=8.5
Q ss_pred CCccccchhhcccCCC
Q 011260 207 GGKKHLLKNIKRRSRF 222 (490)
Q Consensus 207 RG~~~LL~~IkRk~~~ 222 (490)
..+-..|..|++-+..
T Consensus 40 ~~dl~~L~~I~~l~~~ 55 (175)
T PRK13182 40 EEDLQLLEYVKSQIEE 55 (175)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344556666655443
No 80
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=35.60 E-value=1.4e+02 Score=26.92 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.+..|-.+...|...|..|-.++..+..+-.++.+|+..
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444445555543
No 81
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.91 E-value=1.5e+02 Score=32.27 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=40.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLKLRQQ---QDESLCQMSAVAERIRCAECKQQQMLNFFA-KIAKYPNFVQQLV 309 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~kLrQq---Qq~~~~QL~~meeRl~~~E~kQqQml~FLa-kalqnP~FlqqLv 309 (490)
..+..+++.|+++++.+.++|..+.+. ...+..++..+.+++..+|.++..+-.-+. .++.=|.++..-+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 456778888988888888888764332 224555556666666666665555433222 2333344444333
No 82
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.77 E-value=97 Score=23.68 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLC 272 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~ 272 (490)
...+.|+.+...|..|...|+.+...+..
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554444433
No 83
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.73 E-value=1.8e+02 Score=31.62 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=42.5
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHH
Q 011260 239 KFGVEMELETLRNDQKTLRLEMLKLRQQ----QDESLCQMSAVAERIRCAECKQQQMLNFFA-KIAKYPNFVQQLV 309 (490)
Q Consensus 239 ~~gLe~Ele~LKrDq~~L~~El~kLrQq----Qq~~~~QL~~meeRl~~~E~kQqQml~FLa-kalqnP~FlqqLv 309 (490)
...+..+++.|+.+++.+.++|..+.+. ...+..++..+.+++..++.+.+.+-.-+. .++.=|.++..-+
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3457788999999999988888765432 335555666666666666666555433222 2333344444333
No 84
>PRK15396 murein lipoprotein; Provisional
Probab=34.65 E-value=1.8e+02 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSA 276 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~ 276 (490)
++++|..+...|..++..+.+....++..++.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544444433
No 85
>PRK14127 cell division protein GpsB; Provisional
Probab=34.42 E-value=1.1e+02 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR 282 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~ 282 (490)
++.+-.+...|..|+..|+.+...+..++..++.|+.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555667777777777777776666666666655543
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.19 E-value=1.6e+02 Score=30.64 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.7
Q ss_pred hhHHHHHh
Q 011260 178 FSSFIRQL 185 (490)
Q Consensus 178 fsSFvRQL 185 (490)
..+|.|.+
T Consensus 127 vK~~aRl~ 134 (325)
T PF08317_consen 127 VKTYARLE 134 (325)
T ss_pred HHHHHHHH
Confidence 44444444
No 87
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.87 E-value=1.6e+02 Score=27.81 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTL-----RLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKI 298 (490)
Q Consensus 242 Le~Ele~LKrDq~~L-----~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLaka 298 (490)
+..|+.+|+++++.+ .+.=.+|+++...+..+++.+.+.+.....+...++..+..+
T Consensus 45 l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~ 106 (161)
T PF04420_consen 45 LRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWV 106 (161)
T ss_dssp HHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433 222335666666666666666655555555555555544443
No 88
>PRK06798 fliD flagellar capping protein; Validated
Probab=33.86 E-value=1.4e+02 Score=32.80 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 011260 273 QMSAVAERIR 282 (490)
Q Consensus 273 QL~~meeRl~ 282 (490)
|..+|+..|.
T Consensus 412 qf~ale~~ms 421 (440)
T PRK06798 412 KYQKLESTLA 421 (440)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 89
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=33.15 E-value=3.8e+02 Score=24.47 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSA 276 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~ 276 (490)
+.++..|...|...+.+|+.+......++..
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~ 91 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELAS 91 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333333333
No 90
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=33.09 E-value=1.4e+02 Score=32.64 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERIR 282 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl~ 282 (490)
.|...+.+|..++..+..+|..+++||.
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 91
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.79 E-value=39 Score=37.69 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
..+++.+| +.+.|.+||.+|++| +..|.+|+..+|+
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q-------~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQ-------QDDLNDRVDKVEK 59 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHh-------hcccccccchhhH
Confidence 34444444 444555555555554 4456666655544
No 92
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=32.54 E-value=1.5e+02 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
.+-..++.|-+++..|..++..+.+...=...||..+.+|++..
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788889999999999999888777777777777776543
No 93
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=32.53 E-value=2.7e+02 Score=22.70 Aligned_cols=40 Identities=8% Similarity=0.225 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
+..|+...|..+..+...+..-..+...+..+|..|+.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454544444444444444444444444444444
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.74 E-value=1.4e+02 Score=29.58 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 011260 263 LRQQQDESLCQMSAVA 278 (490)
Q Consensus 263 LrQqQq~~~~QL~~me 278 (490)
|+++++.+..++..++
T Consensus 137 L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 137 LKEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333434433333
No 95
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.71 E-value=3.4e+02 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
+..++..|+.....|..++..++.++..+...+.+...|...
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666543
No 96
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=31.27 E-value=22 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=16.1
Q ss_pred hccCCCCCCceEEcCCCCeEEEe
Q 011260 137 MVEDPETDPVVSWSLNRNSFIVW 159 (490)
Q Consensus 137 mVedp~~~~iI~Ws~dG~SFVI~ 159 (490)
++..+..+....|+|||+.|+..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 45566666678999999998765
No 97
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.19 E-value=82 Score=31.74 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=45.3
Q ss_pred ceEecCCCcCCccccchhhcccCCCCCCCCCCcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 198 WEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 198 ~eF~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
|-+.||.|.+-+++|+..|.=..+.. ++. .. .+-++ .++|+.+..+..+++.+
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph~~~----~tV-----SL----ve~ql--------------~r~R~~~~~Le~~l~~L 64 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPHPVA----GTV-----SL----VERQL--------------ARLRNRIRELEEELAAL 64 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCC----Cee-----eh----HHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 55689999999999999887543221 111 11 12233 44455555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 011260 278 AERIRCAECKQQQMLNFFAKIAK 300 (490)
Q Consensus 278 eeRl~~~E~kQqQml~FLakalq 300 (490)
.+.-+..++-+.+++.....+++
T Consensus 65 ~~~A~~N~~lf~r~~~lq~~Ll~ 87 (218)
T COG3159 65 MENARANERLFYRLHALQLDLLD 87 (218)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666666666666666554
No 98
>PLN02320 seryl-tRNA synthetase
Probab=30.99 E-value=1.8e+02 Score=32.62 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLK---------LRQQQDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~k---------LrQqQq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
.+..+++.|+.+++.+.++|.. |+.+-..+..++..+++.+...+.+.+++
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888877777653 22333344444444444444444443333
No 99
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.93 E-value=3e+02 Score=26.47 Aligned_cols=8 Identities=13% Similarity=0.559 Sum_probs=3.6
Q ss_pred hHHHHHHH
Q 011260 304 FVQQLVHK 311 (490)
Q Consensus 304 FlqqLvq~ 311 (490)
.+.++|.+
T Consensus 177 Lv~Rwm~~ 184 (194)
T PF08614_consen 177 LVERWMQR 184 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 100
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.55 E-value=1.6e+02 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
...-+..|......|..++.++..+...+..+|..++.+|+.+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777888888888888888888888888888877654
No 101
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.26 E-value=5.2e+02 Score=26.87 Aligned_cols=14 Identities=0% Similarity=0.209 Sum_probs=8.3
Q ss_pred hcCchhHHHHHHHH
Q 011260 299 AKYPNFVQQLVHKR 312 (490)
Q Consensus 299 lqnP~FlqqLvq~~ 312 (490)
+.|=.|+.+.+..+
T Consensus 245 fRNl~yLe~qle~~ 258 (267)
T PF10234_consen 245 FRNLDYLEHQLEEY 258 (267)
T ss_pred HHhHHHHHHHHHHH
Confidence 45666666666543
No 102
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.23 E-value=46 Score=37.12 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQ 266 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQq 266 (490)
+|++|+++.+.|++++..|..+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 4555555555555554444443
No 103
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=29.81 E-value=3.1e+02 Score=27.12 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 011260 269 ESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVH 310 (490)
Q Consensus 269 ~~~~QL~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq 310 (490)
.+...+..|++||+.++.|-.+|+..|..--+...-+..-++
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~ 152 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQ 152 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence 566678889999999999999999888754333333333444
No 104
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=29.60 E-value=24 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 253 QKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295 (490)
Q Consensus 253 q~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FL 295 (490)
...|..++.++...|.. |+..|..++..|..+-.+|
T Consensus 59 I~~L~~~v~~~~~~Q~~-------ld~~L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 59 ISKLYSEVQKAESEQKR-------LDQELDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 3444444444444443333
No 105
>PLN02678 seryl-tRNA synthetase
Probab=29.55 E-value=2.1e+02 Score=31.69 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=17.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLK 262 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~k 262 (490)
..+..+++.|+.+++.+..+|..
T Consensus 43 r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 43 RQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888887764
No 106
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.45 E-value=1.6e+02 Score=30.35 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQ 266 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQq 266 (490)
.+.+|++++..|.+|+..|+++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~ 88 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQ 88 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555433
No 107
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.36 E-value=2e+02 Score=32.68 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=5.0
Q ss_pred hhhhhhccc
Q 011260 163 DFSENLLPK 171 (490)
Q Consensus 163 ~F~~~VLP~ 171 (490)
.|...-||+
T Consensus 76 ~F~ayyLPk 84 (546)
T PF07888_consen 76 QFQAYYLPK 84 (546)
T ss_pred EECcccCCC
Confidence 455555664
No 108
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=29.32 E-value=3.2e+02 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 252 DQKTLRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 252 Dq~~L~~El~kLrQqQq~~~~QL~~me 278 (490)
++..+...+.+|||+...+..-+.+|.
T Consensus 5 dqaeirl~~arLrqeH~D~DaaInAmi 31 (67)
T COG5481 5 DQAEIRLTLARLRQEHADFDAAINAMI 31 (67)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344466677777777777766666665
No 109
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.31 E-value=3.7e+02 Score=27.32 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
...++..|+.+...|..++..|+.++..+...+.++..|...
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888888888877744
No 110
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.92 E-value=2e+02 Score=31.87 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.|++.|+.+...+..|+..|+.|.+.+..+++.++.++..
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999998888888887776655
No 111
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=28.86 E-value=2.5e+02 Score=26.60 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 011260 305 VQQLVHKRK 313 (490)
Q Consensus 305 lqqLvq~~~ 313 (490)
+++|++++.
T Consensus 34 ~knLv~RN~ 42 (142)
T PF08781_consen 34 FKNLVQRNR 42 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345666554
No 112
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.70 E-value=1.9e+02 Score=26.59 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR 282 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~ 282 (490)
-+..|+...+.|...|..|+.+...+..++..|+..|+
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777766666666655555443
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.66 E-value=2.6e+02 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSA 276 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~ 276 (490)
++..|..+...|..|+..|+++...+..++..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555443
No 114
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.58 E-value=2.9e+02 Score=26.83 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=4.6
Q ss_pred hhHHHHHhhc
Q 011260 178 FSSFIRQLNT 187 (490)
Q Consensus 178 fsSFvRQLN~ 187 (490)
|.-.+||...
T Consensus 68 F~ELIRQVTi 77 (189)
T PF10211_consen 68 FDELIRQVTI 77 (189)
T ss_pred HHHHHHHHHh
Confidence 4444555443
No 115
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.27 E-value=2.9e+02 Score=21.93 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
.+.+++.+...|..++..+++++..+..++..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666665555555
No 116
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=28.23 E-value=3.2e+02 Score=27.17 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.||..||..+..|+.|-+.||.
T Consensus 55 ~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 55 NEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555554
No 117
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.15 E-value=4.4e+02 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
+..|......+..||..|.+....+..++..++.+|
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443333
No 118
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=28.08 E-value=2.5e+02 Score=31.37 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=28.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFA 296 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLa 296 (490)
..+..++..|.++...+...+.. .++.++.|...|+..+..|...+..|..||.
T Consensus 425 ~~l~~~i~~l~~~i~~~~~rl~~---~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~ 478 (483)
T COG1345 425 DSLNKQIKSLDKDIKSLDKRLEA---AEERYKTQFNTLDDMMTQMNSQSSYLTQQLV 478 (483)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666666666543333 3334455555555555555554444444444
No 119
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.04 E-value=1.6e+02 Score=26.03 Aligned_cols=7 Identities=0% Similarity=0.145 Sum_probs=3.1
Q ss_pred hhHHHHH
Q 011260 303 NFVQQLV 309 (490)
Q Consensus 303 ~FlqqLv 309 (490)
.++....
T Consensus 65 dyiEe~A 71 (105)
T PRK00888 65 EAIEERA 71 (105)
T ss_pred HHHHHHH
Confidence 4444443
No 120
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.85 E-value=3.2e+02 Score=26.43 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 251 NDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQML 292 (490)
Q Consensus 251 rDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml 292 (490)
.....|...+..+..+...+..++..|+.+|..++.+...++
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555566666666666655555443
No 121
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.85 E-value=3e+02 Score=21.65 Aligned_cols=11 Identities=27% Similarity=0.311 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQ 265 (490)
Q Consensus 255 ~L~~El~kLrQ 265 (490)
.|..+...|+.
T Consensus 37 ~L~~en~~L~~ 47 (64)
T PF00170_consen 37 ELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 122
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=27.82 E-value=3.6e+02 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
++..++.....+..++..|+.....+..++..+..|...+
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L 84 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQEL 84 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666444444444444444444443
No 123
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=27.65 E-value=3.3e+02 Score=29.58 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
.+..|...+..|...+...+..|....+.++++++.+.+|++..
T Consensus 327 ~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~ 370 (400)
T COG5613 327 ALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEE 370 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555443
No 124
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.38 E-value=2.4e+02 Score=29.72 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 252 DQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 252 Dq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
+++.|.-|+.-|...++.++.|+..|++-|+.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444444
No 125
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.16 E-value=3.1e+02 Score=26.07 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=12.3
Q ss_pred hHHHHHhhccCccccc
Q 011260 179 SSFIRQLNTYGFKKIH 194 (490)
Q Consensus 179 sSFvRQLN~YGF~Kv~ 194 (490)
-.||++|..-||..-.
T Consensus 5 ~~~v~~Le~~Gft~~Q 20 (177)
T PF07798_consen 5 HKFVKRLEAAGFTEEQ 20 (177)
T ss_pred HHHHHHHHHCCCCHHH
Confidence 3689999888987654
No 126
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.73 E-value=3.7e+02 Score=29.37 Aligned_cols=54 Identities=6% Similarity=0.095 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCchhHHH
Q 011260 254 KTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQ------QQMLNFFAKIAKYPNFVQQ 307 (490)
Q Consensus 254 ~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQ------qQml~FLakalqnP~Flqq 307 (490)
..|..++.+|.........++..+++++..+...+ .....++..++++++|-..
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~ 420 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKAS 420 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444444443333344444444443332221 1234456666666665443
No 127
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.70 E-value=3.9e+02 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
..+|++|+.+...|..+|..+..+...-...+..+-+++....+|
T Consensus 85 ~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 85 EKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333333333333333333333333334444343
No 128
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.45 E-value=1.7e+02 Score=26.20 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQ 266 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQq 266 (490)
+.+|..+...|..+|..|+++
T Consensus 10 l~~le~~l~~l~~~~~~LK~~ 30 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQ 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444433333
No 129
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.21 E-value=5.2e+02 Score=25.57 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=34.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
..+..+++.|+.....|..++..|+.++..+...+.++..|...
T Consensus 36 ~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~r 79 (195)
T PRK14148 36 LSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79 (195)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888877754
No 130
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.78 E-value=5.2e+02 Score=23.64 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAE 285 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E 285 (490)
+.+.|.++--+...|..++.+|.++...+..++..+..+....+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777777777777777777766655543
No 131
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.54 E-value=2.9e+02 Score=24.11 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
|..++..|+.+...+..++..++..-+..+.+-.+-.+||..+
T Consensus 29 Lss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 29 LASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 4456666666666666666666666555555555666666553
No 132
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=25.43 E-value=2.6e+02 Score=32.42 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 011260 253 QKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVH 310 (490)
Q Consensus 253 q~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq 310 (490)
...|...+.++..++..+..+|...++||+.+ -.+|=..|+++=+.-.+|.+++.
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~Q---FtaME~~msqmnsqss~L~~~~~ 656 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEKKLESKERKLKGK---YLTMDQTVKKMKEQSNYLKNFNK 656 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555432 22344455555455556666664
No 133
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=25.39 E-value=1.7e+02 Score=30.53 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.++.|++..+.+-..|..++..|+++..+++.|+..|.+.|.+
T Consensus 68 ~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 68 NKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEG 110 (389)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666777777766666676666665544
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=2.4e+02 Score=32.57 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.+...+++|++++..|..++..|+.+.+.+..++..+..++..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888888888888877766653
No 135
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.72 E-value=2.6e+02 Score=23.38 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR 282 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~ 282 (490)
...-++.|+.+...+..++.+|+.+...+..++..++..+.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777778888888888777777777666665553
No 136
>PRK15396 murein lipoprotein; Provisional
Probab=24.57 E-value=4.5e+02 Score=22.48 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
.|..+++.|+.+...|..++..+|..-+....+-.+-.+||..+
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999998888888888888764
No 137
>PRK07737 fliD flagellar capping protein; Validated
Probab=24.36 E-value=2.6e+02 Score=31.05 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.|..++..+.+++..+..+|..+++|+
T Consensus 445 ~l~~~i~~l~~~i~~~~~rl~~~e~ry 471 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDRLKQIEDRY 471 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555554
No 138
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.18 E-value=5.1e+02 Score=27.13 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.3
Q ss_pred cCCCCCcccHHHHhh
Q 011260 467 GKSHSWGGYVNELAE 481 (490)
Q Consensus 467 ~~~~~W~~~~~~lv~ 481 (490)
.++..|+.-++.|.-
T Consensus 285 ~~~~~WT~AlK~lLt 299 (314)
T PF04111_consen 285 NSEEEWTKALKYLLT 299 (314)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 345567766666554
No 139
>PRK00295 hypothetical protein; Provisional
Probab=23.55 E-value=4e+02 Score=21.85 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAE 285 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E 285 (490)
|+..+.-..+-...|-..|.+..++...+..++..|.+|+..++
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 140
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.32 E-value=5.3e+02 Score=25.02 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQ 288 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQ 288 (490)
.+..|..+|+.+...+..++..|+..+...++++
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444444444433
No 141
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=23.31 E-value=4.4e+02 Score=30.61 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 252 DQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLN 293 (490)
Q Consensus 252 Dq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~ 293 (490)
.+..|.+||.+||.+...+..+|..++..+...|...++|..
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~ 121 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLD 121 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777666644
No 142
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=23.09 E-value=6.1e+02 Score=25.61 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 247 ETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQ 288 (490)
Q Consensus 247 e~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQ 288 (490)
..++.+...+...+..|+.+...+..+...++.+|..++.+.
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 334444444444444455555555555555555665555443
No 143
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.03 E-value=3.3e+02 Score=24.72 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~me 278 (490)
.++.+++.+|.+...+..++..|++++...+.++..+.
T Consensus 52 ~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 52 SLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888877777766544
No 144
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.97 E-value=6.2e+02 Score=23.53 Aligned_cols=44 Identities=9% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 254 KTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297 (490)
Q Consensus 254 ~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLak 297 (490)
..+...+..|.+.......+|..|..++..+|....++-..|..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555554444444444443
No 145
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.90 E-value=4.9e+02 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQD 268 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq 268 (490)
.++..|+.....|...|...+.+..
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~ 47 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENE 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333333
No 146
>PRK00846 hypothetical protein; Provisional
Probab=22.84 E-value=3.7e+02 Score=22.96 Aligned_cols=8 Identities=13% Similarity=-0.384 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 011260 289 QQMLNFFA 296 (490)
Q Consensus 289 qQml~FLa 296 (490)
++.+.-|.
T Consensus 40 q~~I~~L~ 47 (77)
T PRK00846 40 RLTGARNA 47 (77)
T ss_pred HHHHHHHH
Confidence 33333333
No 147
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.83 E-value=3.8e+02 Score=23.62 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 259 EMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 259 El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
++.+|+-...++..++..|+.+++.+.+
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333333444455555555555543
No 148
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.74 E-value=3.2e+02 Score=24.67 Aligned_cols=46 Identities=13% Similarity=0.256 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
.++.-++-|++....|...+..|.++...+..++..+...++.+..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777666666655443
No 149
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=22.72 E-value=5.2e+02 Score=27.78 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQD---ESLCQMSAVAERIRCAECKQQQMLNFFA 296 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq---~~~~QL~~meeRl~~~E~kQqQml~FLa 296 (490)
....-++.|+.+.+.|..++.+|..+.. ...+++..+++++...+++..++-.+++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777766432 3445666777777777777666555543
No 150
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=22.66 E-value=2.4e+02 Score=32.66 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 262 KLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 262 kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
.|..+...+..++..+++||...|.+
T Consensus 604 ~l~~~i~~l~~~i~~~e~rl~~~e~r 629 (661)
T PRK06664 604 GLDERIADNNKKIEEYEKKLESKERK 629 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333
No 151
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.62 E-value=3.7e+02 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
++..+-..+.+++..|.++|..|+.+...+..+..-+..|+..
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 3444444455555566666666666655555555555544443
No 152
>PRK14163 heat shock protein GrpE; Provisional
Probab=22.35 E-value=5.5e+02 Score=25.86 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
..+.+.|+.....|..++..|+.++..+...+.+...|...
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777888877777777777777777654
No 153
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=22.33 E-value=2.7e+02 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 267 QDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 267 Qq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
.+.++.+|+.|+.+++..|.-.+.+
T Consensus 70 v~~~E~~mk~l~~k~~~~e~~~~~l 94 (101)
T PF12308_consen 70 VRKMETQMKGLESKFRQVEDDRKSL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 3456666666666666655544443
No 154
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.14 E-value=4.3e+02 Score=21.35 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLN 293 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~ 293 (490)
.|..++-++.-....++.+.+.+.+.+..+++.-+.+|.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555554443
No 155
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.74 E-value=3.7e+02 Score=23.57 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
..-+..|+.....+...+..|..+...+..++..++.+++.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666667777777777666666666666655543
No 156
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.73 E-value=5.3e+02 Score=22.30 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSA 276 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~ 276 (490)
|+..|.+--.....|+.||..|+.+...+..++..
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556677888888888887777666554
No 157
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.48 E-value=5.8e+02 Score=24.48 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011260 252 DQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIA 299 (490)
Q Consensus 252 Dq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakal 299 (490)
-...|..-|..|.+ ++....+|..|+..+...+.+.+.++.-|..+-
T Consensus 10 ~d~~L~~~L~~l~~-hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 10 ADDELSSALEELQE-HQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433 334466666676666666666666666555553
No 158
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.48 E-value=2.7e+02 Score=32.54 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQ 273 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~Q 273 (490)
...+.+|..|...|..||...||.=++++.|
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445556666666666666655555555555
No 159
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.42 E-value=4.4e+02 Score=29.80 Aligned_cols=31 Identities=6% Similarity=0.174 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 257 RLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 257 ~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
..+|..|++.+-..-..|...+.|+..+++|
T Consensus 361 ~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~R 391 (508)
T KOG3091|consen 361 GERVTELQKHHADAVAKIEEAKNRHVELSHR 391 (508)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444433334444444444444444444
No 160
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.39 E-value=2e+02 Score=29.33 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~me 278 (490)
+-.+-+++|.-+..|..|+.+++++...++.++..++
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~ 120 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR 120 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888888888888888888887777777764
No 161
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=21.31 E-value=4.4e+02 Score=25.66 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR 282 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~ 282 (490)
|..+++..+..+..|..+|.+|+++...+..+|..=+...+
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~ 126 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR 126 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777888888877777666666555444443
No 162
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.27 E-value=1.4e+02 Score=31.87 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQD----ESLCQMSAVAERIRCAECKQQQ 290 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq----~~~~QL~~meeRl~~~E~kQqQ 290 (490)
..|++.||..+.....++..+..... .+..++..+++|+..+|.+...
T Consensus 111 kkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~ 162 (370)
T PF02994_consen 111 KKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEE 162 (370)
T ss_dssp -------H-------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555444333333333333221 2334444445554444444433
No 163
>smart00338 BRLZ basic region leucin zipper.
Probab=21.09 E-value=4.1e+02 Score=20.91 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESL 271 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~ 271 (490)
|+.++..|..++..|..++..|+++...+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555444433
No 164
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.06 E-value=3.4e+02 Score=29.76 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 256 LRLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 256 L~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
|......|..+...+..|+.++++||...|.|
T Consensus 404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555554444
No 165
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.88 E-value=2e+02 Score=32.26 Aligned_cols=33 Identities=6% Similarity=0.092 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 262 KLRQQQDESLCQMSAVAERIRCAECKQQQMLNF 294 (490)
Q Consensus 262 kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~F 294 (490)
.|+++...++.+++.|..+....+.+.+.+=+.
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 166
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=20.88 E-value=4.3e+02 Score=24.96 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=9.9
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEM 260 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El 260 (490)
.|..|++.|+..+..+..++
T Consensus 15 ~L~~EL~~L~~~r~~i~~~i 34 (158)
T PRK05892 15 HLEAELARLRARRDRLAVEV 34 (158)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 45555655555444444444
No 167
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.86 E-value=4.4e+02 Score=30.15 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=31.5
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 238 AKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAER 280 (490)
Q Consensus 238 ~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeR 280 (490)
.++.+-.-++|+|.+.+-|++....||-+.+.+-++-..|++.
T Consensus 17 ~Kft~~etldRIKdEfqflqaqyhslkleceKlA~EKteMqRh 59 (705)
T KOG0639|consen 17 FKFTILETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRH 59 (705)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3566667788899888888888888888777776665555543
No 168
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.85 E-value=5.9e+02 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
+...+.....+..++..|+.+++....+...++..+..++.|
T Consensus 237 L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 237 LAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444444444444444444433
No 169
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.83 E-value=5.3e+02 Score=24.76 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 011260 276 AVAERIRCAECKQQ 289 (490)
Q Consensus 276 ~meeRl~~~E~kQq 289 (490)
.++++++.++....
T Consensus 162 ~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 162 MLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 170
>PRK04406 hypothetical protein; Provisional
Probab=20.63 E-value=4e+02 Score=22.34 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 011260 288 QQQMLNFFAK 297 (490)
Q Consensus 288 QqQml~FLak 297 (490)
|++.+.-|.+
T Consensus 37 Qq~~I~~L~~ 46 (75)
T PRK04406 37 QQLLITKMQD 46 (75)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 171
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.50 E-value=4.8e+02 Score=28.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQ 266 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQq 266 (490)
.++++|+++...+..++.++++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 172
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.32 E-value=5.8e+02 Score=26.09 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.|++.|++++..+..++..+.++|.....++.++.-.+..
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777776666666555555555444433
No 173
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.31 E-value=6.3e+02 Score=25.54 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIA 299 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakal 299 (490)
|+.++.+++.|..|-..+-++.+.+...+..|+.=|...+....++..-..+++
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555565555555555555555566666555555544444444444444
No 174
>PHA01750 hypothetical protein
Probab=20.27 E-value=3.2e+02 Score=23.01 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
....|+..|+.+.+.+.....++++++...
T Consensus 39 IV~~ELdNL~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 39 IVNSELDNLKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555555555555544444444444433
No 175
>PRK07737 fliD flagellar capping protein; Validated
Probab=20.23 E-value=2.9e+02 Score=30.77 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 263 LRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 263 LrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
|..+...+..|+..++.||...|.|
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~e~r 470 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQIEDR 470 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544
No 176
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.19 E-value=7.3e+02 Score=24.45 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.+|+.++.....|..++..|+.++..+...+.+...|...
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888877777777777777644
No 177
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.17 E-value=6.2e+02 Score=23.74 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 011260 244 MELETLRNDQ 253 (490)
Q Consensus 244 ~Ele~LKrDq 253 (490)
.++..++.+.
T Consensus 109 ~~l~~~~~~~ 118 (191)
T PF04156_consen 109 SELEKLKEDL 118 (191)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 178
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.00 E-value=5.5e+02 Score=24.32 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
..+.-++.|++..+.|..-+.+|.+....+..++..+.+.++..
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888777777777777776666666666655555444
Done!