Query 011260
Match_columns 490
No_of_seqs 260 out of 1035
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 1.5E-38 5.1E-43 275.5 7.6 94 126-219 3-106 (106)
2 2ldu_A Heat shock factor prote 100.0 8.2E-38 2.8E-42 278.5 8.8 99 124-222 14-123 (125)
3 3hts_B Heat shock transcriptio 100.0 9.2E-32 3.1E-36 232.3 4.8 81 124-204 9-100 (102)
4 1awc_A Protein (GA binding pro 88.3 0.48 1.6E-05 41.4 4.5 69 133-201 6-79 (110)
5 2ypr_A Protein FEV; transcript 86.4 0.53 1.8E-05 40.6 3.7 76 126-201 6-86 (102)
6 1fli_A FLI-1; transcription/DN 85.7 0.55 1.9E-05 40.2 3.4 62 128-189 6-68 (98)
7 4avp_A ETS translocation varia 85.6 0.68 2.3E-05 40.1 4.0 76 126-201 10-90 (106)
8 1bc8_C SAP-1, protein (SAP-1 E 84.6 0.62 2.1E-05 39.6 3.2 75 128-202 5-84 (93)
9 2dao_A Transcription factor ET 83.2 1.2 4E-05 39.4 4.5 77 126-202 7-89 (118)
10 2nny_A C-ETS-1 protein, P54; p 82.8 1.2 4.2E-05 41.5 4.6 78 125-202 62-144 (171)
11 1gvj_A C-ETS-1 protein, P54; t 82.7 0.97 3.3E-05 41.2 3.9 78 125-202 37-119 (146)
12 2jee_A YIIU; FTSZ, septum, coi 80.2 11 0.00037 31.2 9.0 36 242-277 25-60 (81)
13 3jtg_A ETS-related transcripti 80.2 2.1 7.2E-05 36.9 4.9 74 129-202 6-86 (103)
14 1hbx_G ETS-domain protein ELK- 79.8 1.4 4.7E-05 40.7 3.8 75 128-202 6-85 (157)
15 1wwx_A E74-like factor 5 ESE-2 72.3 2.9 9.8E-05 36.3 3.6 76 126-202 7-89 (107)
16 3tnu_B Keratin, type II cytosk 68.1 32 0.0011 29.9 9.5 43 242-284 34-76 (129)
17 1yo5_C SAM pointed domain cont 66.5 3.5 0.00012 35.2 2.9 65 127-191 10-77 (97)
18 2lf8_A Transcription factor ET 69.0 1.3 4.4E-05 39.6 0.0 35 132-166 9-44 (128)
19 1pue_E Protein (transcription 64.9 3.7 0.00013 34.5 2.7 69 132-201 6-83 (89)
20 1a93_B MAX protein, coiled coi 64.5 9.4 0.00032 26.9 4.2 29 249-277 5-33 (34)
21 2yy0_A C-MYC-binding protein; 62.7 14 0.00048 28.0 5.3 31 244-274 19-49 (53)
22 3e98_A GAF domain of unknown f 62.0 18 0.00061 35.1 7.3 80 198-304 39-118 (252)
23 3tnu_A Keratin, type I cytoske 60.9 31 0.0011 30.1 8.1 43 242-284 36-78 (131)
24 2v66_B Nuclear distribution pr 59.0 63 0.0022 28.1 9.5 44 253-296 37-80 (111)
25 3he5_B Synzip2; heterodimeric 58.2 27 0.00094 25.8 5.9 40 242-281 8-47 (52)
26 2wt7_A Proto-oncogene protein 56.7 22 0.00076 27.4 5.7 27 242-268 28-54 (63)
27 1deb_A APC protein, adenomatou 56.5 50 0.0017 25.2 7.2 37 242-278 8-44 (54)
28 3hnw_A Uncharacterized protein 56.0 39 0.0013 30.1 7.9 38 244-281 68-105 (138)
29 1t2k_D Cyclic-AMP-dependent tr 54.0 23 0.00079 27.0 5.3 29 242-270 27-55 (61)
30 2yy0_A C-MYC-binding protein; 51.4 27 0.00091 26.5 5.2 31 251-281 19-49 (53)
31 3hnw_A Uncharacterized protein 50.2 62 0.0021 28.8 8.3 36 242-277 73-108 (138)
32 4etp_A Kinesin-like protein KA 47.8 58 0.002 33.6 8.8 47 245-291 4-50 (403)
33 3i00_A HIP-I, huntingtin-inter 47.0 93 0.0032 27.2 8.7 29 242-270 13-41 (120)
34 1wt6_A Myotonin-protein kinase 42.9 84 0.0029 26.0 7.2 31 253-283 26-56 (81)
35 2wt7_B Transcription factor MA 42.9 64 0.0022 27.1 6.7 40 244-283 48-87 (90)
36 1kd8_B GABH BLL, GCN4 acid bas 42.0 48 0.0016 23.5 4.8 27 241-267 5-31 (36)
37 3q8t_A Beclin-1; autophagy, AT 41.6 1.4E+02 0.0047 24.9 8.6 45 241-285 8-52 (96)
38 2w83_C C-JUN-amino-terminal ki 41.3 34 0.0011 28.1 4.6 36 242-277 35-70 (77)
39 1g6u_A Domain swapped dimer; d 40.8 76 0.0026 23.2 5.9 9 243-251 6-14 (48)
40 3cue_D Transport protein parti 40.4 35 0.0012 32.0 5.3 63 127-190 86-157 (193)
41 4dzn_A Coiled-coil peptide CC- 40.1 42 0.0014 22.8 4.1 18 246-263 11-28 (33)
42 3oja_B Anopheles plasmodium-re 40.0 1.1E+02 0.0036 32.0 9.5 40 242-281 507-546 (597)
43 3t97_C Nuclear pore glycoprote 38.7 15 0.00052 29.0 2.1 37 242-278 17-53 (64)
44 1sz7_A BET3 homolog, trafficki 38.5 28 0.00095 33.0 4.3 64 127-191 83-154 (200)
45 1jnm_A Proto-oncogene C-JUN; B 38.3 22 0.00076 27.2 3.0 27 242-268 27-53 (62)
46 1ci6_A Transcription factor AT 38.2 51 0.0018 25.4 5.1 28 254-281 26-53 (63)
47 2xdj_A Uncharacterized protein 38.1 1.5E+02 0.0052 24.2 8.2 40 256-295 25-64 (83)
48 3m48_A General control protein 37.7 40 0.0014 23.5 3.8 25 241-265 4-28 (33)
49 1kd8_A GABH AIV, GCN4 acid bas 36.5 66 0.0023 22.8 4.8 28 241-268 5-32 (36)
50 3na7_A HP0958; flagellar bioge 36.4 1.5E+02 0.0052 28.2 9.3 7 392-398 195-201 (256)
51 4etp_A Kinesin-like protein KA 35.9 97 0.0033 31.9 8.3 34 243-276 9-42 (403)
52 3a7p_A Autophagy protein 16; c 35.5 2.6E+02 0.0089 25.5 10.1 20 245-264 69-88 (152)
53 1hjb_A Ccaat/enhancer binding 34.9 52 0.0018 27.3 4.9 27 255-281 40-66 (87)
54 3a2a_A Voltage-gated hydrogen 34.9 1E+02 0.0035 23.8 6.1 32 244-275 11-42 (58)
55 3oja_B Anopheles plasmodium-re 34.8 1.9E+02 0.0064 30.1 10.4 9 242-250 468-476 (597)
56 3uux_B Mitochondrial division 34.5 1.5E+02 0.0052 28.9 8.8 66 246-311 151-216 (242)
57 2v66_B Nuclear distribution pr 34.5 1.8E+02 0.0062 25.2 8.4 46 242-287 40-85 (111)
58 1nkp_B MAX protein, MYC proto- 34.1 42 0.0014 26.8 4.2 29 246-274 49-77 (83)
59 3q8t_A Beclin-1; autophagy, AT 33.7 1.9E+02 0.0065 24.0 8.3 29 242-270 23-51 (96)
60 1jcd_A Major outer membrane li 33.6 1.2E+02 0.0041 23.0 6.3 41 242-282 9-49 (52)
61 2v71_A Nuclear distribution pr 32.9 2.3E+02 0.0077 26.7 9.5 58 253-310 90-154 (189)
62 4e61_A Protein BIM1; EB1-like 32.8 1.7E+02 0.0059 25.2 7.9 43 255-297 8-50 (106)
63 1nkp_A C-MYC, MYC proto-oncoge 32.7 73 0.0025 26.1 5.5 32 246-277 54-85 (88)
64 1deb_A APC protein, adenomatou 32.4 1.7E+02 0.0057 22.3 7.7 39 246-284 5-43 (54)
65 3bj4_A Potassium voltage-gated 31.8 78 0.0027 23.9 4.9 30 270-299 15-44 (49)
66 4dzn_A Coiled-coil peptide CC- 31.8 1.1E+02 0.0039 20.7 5.2 21 245-265 3-23 (33)
67 2dq0_A Seryl-tRNA synthetase; 31.4 1.3E+02 0.0044 31.5 8.4 55 239-293 40-97 (455)
68 2jee_A YIIU; FTSZ, septum, coi 31.4 2.2E+02 0.0075 23.4 9.4 36 242-277 11-46 (81)
69 1wt6_A Myotonin-protein kinase 30.8 2E+02 0.0068 23.8 7.6 42 251-292 14-58 (81)
70 1lwu_C Fibrinogen gamma chain; 30.7 1.1E+02 0.0039 30.8 7.6 8 458-465 166-173 (323)
71 4ani_A Protein GRPE; chaperone 30.5 1.7E+02 0.0057 28.0 8.3 40 244-283 59-98 (213)
72 3qne_A Seryl-tRNA synthetase, 30.2 1.4E+02 0.0047 31.8 8.4 57 239-295 42-101 (485)
73 2dfs_A Myosin-5A; myosin-V, in 29.9 2.1E+02 0.0072 33.3 10.5 16 21-36 545-560 (1080)
74 2dgc_A Protein (GCN4); basic d 29.8 40 0.0014 26.2 3.2 24 242-265 35-58 (63)
75 3c3g_A Alpha/beta peptide with 29.8 64 0.0022 22.5 3.8 24 242-265 5-28 (33)
76 1wle_A Seryl-tRNA synthetase; 29.7 2E+02 0.0067 30.7 9.5 57 239-295 79-146 (501)
77 3a7p_A Autophagy protein 16; c 28.9 2.4E+02 0.0082 25.8 8.6 25 262-286 100-124 (152)
78 3c3f_A Alpha/beta peptide with 28.7 68 0.0023 22.5 3.8 25 241-265 5-29 (34)
79 1aq5_A Matrilin-1, CMP, cartil 28.4 1E+02 0.0035 23.0 5.0 26 256-281 21-46 (47)
80 2v71_A Nuclear distribution pr 27.7 2.2E+02 0.0075 26.8 8.4 11 277-287 107-117 (189)
81 1gmj_A ATPase inhibitor; coile 27.4 2.5E+02 0.0085 23.3 7.7 25 257-281 50-74 (84)
82 2aze_A Transcription factor DP 27.2 1.7E+02 0.0058 26.8 7.4 17 245-261 6-22 (155)
83 1ic2_A Tropomyosin alpha chain 27.0 2.4E+02 0.0081 22.4 8.1 49 242-290 25-73 (81)
84 1g6u_A Domain swapped dimer; d 26.8 1.9E+02 0.0063 21.1 6.7 10 256-265 5-14 (48)
85 1lwu_C Fibrinogen gamma chain; 26.6 1.7E+02 0.0059 29.5 8.1 21 264-284 25-45 (323)
86 1uo4_A General control protein 26.6 78 0.0027 22.2 3.8 25 241-265 5-29 (34)
87 2wq1_A General control protein 26.5 79 0.0027 22.0 3.8 24 242-265 5-28 (33)
88 2zqm_A Prefoldin beta subunit 26.4 1.6E+02 0.0055 24.2 6.7 42 242-283 68-109 (117)
89 2oxj_A Hybrid alpha/beta pepti 25.8 82 0.0028 22.1 3.8 25 241-265 5-29 (34)
90 1gd2_E Transcription factor PA 25.7 71 0.0024 25.5 4.0 21 245-265 37-57 (70)
91 3u06_A Protein claret segregat 25.6 1.8E+02 0.0063 30.0 8.3 23 459-481 223-245 (412)
92 3kqg_A Langerin, C-type lectin 25.6 92 0.0031 27.1 5.3 14 242-255 4-17 (182)
93 3cvf_A Homer-3, homer protein 25.2 1.4E+02 0.0046 24.5 5.7 13 246-258 15-27 (79)
94 2bni_A General control protein 25.1 86 0.0029 22.0 3.8 25 241-265 5-29 (34)
95 2hy6_A General control protein 24.8 88 0.003 21.9 3.8 25 241-265 5-29 (34)
96 2xu6_A MDV1 coiled coil; prote 24.7 1.1E+02 0.0037 24.8 4.9 42 242-283 26-67 (72)
97 1nlw_A MAD protein, MAX dimeri 24.3 91 0.0031 25.1 4.5 28 246-273 49-76 (80)
98 3cve_A Homer protein homolog 1 24.2 2.8E+02 0.0095 22.3 7.3 16 268-283 17-32 (72)
99 3u06_A Protein claret segregat 23.7 2.4E+02 0.0082 29.1 8.7 16 242-257 8-23 (412)
100 3ra3_B P2F; coiled coil domain 23.4 66 0.0023 21.2 2.8 15 248-262 4-18 (28)
101 1hjb_A Ccaat/enhancer binding 22.8 1.9E+02 0.0066 23.9 6.3 25 244-268 43-67 (87)
102 1ses_A Seryl-tRNA synthetase; 22.5 1.6E+02 0.0054 30.5 7.0 52 240-291 38-90 (421)
103 3tnu_B Keratin, type II cytosk 21.9 3.6E+02 0.012 23.1 8.3 24 242-265 48-71 (129)
104 2fcw_A Alpha-2-macroglobulin r 21.7 3.9E+02 0.013 23.1 8.9 29 243-271 23-51 (109)
105 3ghg_A Fibrinogen alpha chain; 21.5 1.5E+02 0.005 32.2 6.6 67 242-308 115-202 (562)
106 4emc_A Monopolin complex subun 21.4 5E+02 0.017 24.5 9.5 36 246-281 22-57 (190)
107 1gu4_A CAAT/enhancer binding p 21.4 68 0.0023 26.1 3.2 23 256-278 41-63 (78)
108 3a2a_A Voltage-gated hydrogen 21.3 2.9E+02 0.0099 21.4 6.7 33 258-290 11-43 (58)
109 3mq7_A Bone marrow stromal ant 21.1 1.4E+02 0.0049 26.2 5.3 33 242-274 76-108 (121)
110 1l8d_A DNA double-strand break 20.8 2.1E+02 0.0072 23.5 6.3 33 245-277 4-36 (112)
111 3uux_B Mitochondrial division 20.2 2E+02 0.0068 28.1 6.7 48 244-291 163-210 (242)
112 4gkw_A Spindle assembly abnorm 20.2 4.1E+02 0.014 23.9 8.2 6 364-369 135-140 (167)
113 4emc_A Monopolin complex subun 20.1 3E+02 0.01 25.9 7.7 40 242-281 25-64 (190)
114 4e61_A Protein BIM1; EB1-like 20.0 4.2E+02 0.014 22.8 8.6 30 249-278 9-38 (106)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=1.5e-38 Score=275.46 Aligned_cols=94 Identities=40% Similarity=0.819 Sum_probs=90.8
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc----------C
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH----------S 195 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~----------~ 195 (490)
++|+|+.|||.||+||+++++|+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||||+. +
T Consensus 3 ~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~ 82 (106)
T 1hks_A 3 GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDR 82 (106)
T ss_dssp TCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTT
T ss_pred CcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred CcceEecCCCcCCccccchhhccc
Q 011260 196 NRWEFANEKFRGGKKHLLKNIKRR 219 (490)
Q Consensus 196 ~~~eF~h~~F~RG~~~LL~~IkRk 219 (490)
+.|+|+|++|+||+|+||.+|+||
T Consensus 83 ~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 83 DEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp STTEECCTTCCSSCTTSTTTCCCC
T ss_pred CceEEECcCccCcCHHHHhhCcCC
Confidence 679999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=278.54 Aligned_cols=99 Identities=44% Similarity=0.847 Sum_probs=94.0
Q ss_pred CCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc---------
Q 011260 124 EVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH--------- 194 (490)
Q Consensus 124 ~~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~--------- 194 (490)
..+.++||.|||.||+||++++||+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||+|+.
T Consensus 14 ~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~ 93 (125)
T 2ldu_A 14 PSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVK 93 (125)
T ss_dssp SCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSS
T ss_pred CCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeecccccccc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --CCcceEecCCCcCCccccchhhcccCCC
Q 011260 195 --SNRWEFANEKFRGGKKHLLKNIKRRSRF 222 (490)
Q Consensus 195 --~~~~eF~h~~F~RG~~~LL~~IkRk~~~ 222 (490)
++.|+|+||+|+||+|+||.+|+||++.
T Consensus 94 ~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 94 PERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp CSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred CCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4679999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=9.2e-32 Score=232.34 Aligned_cols=81 Identities=43% Similarity=0.920 Sum_probs=76.9
Q ss_pred CCCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcccccCCCChhHHHHHhhccCccccc---------
Q 011260 124 EVGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIH--------- 194 (490)
Q Consensus 124 ~~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~yFKhsnfsSFvRQLN~YGF~Kv~--------- 194 (490)
...+|+|+.|||.||+||.++++|+|+++|++|||+|+.+|++.|||+||||+||+||+||||+|||||+.
T Consensus 9 ~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~ 88 (102)
T 3hts_B 9 SMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLS 88 (102)
T ss_dssp -CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------
T ss_pred CCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --CCcceEecCC
Q 011260 195 --SNRWEFANEK 204 (490)
Q Consensus 195 --~~~~eF~h~~ 204 (490)
+++|||+|++
T Consensus 89 ~~~~~wEF~n~~ 100 (102)
T 3hts_B 89 NNDSRWEFENER 100 (102)
T ss_dssp CCSCCEEEEECC
T ss_pred CCcCCeEecCCC
Confidence 6789999986
No 4
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=88.29 E-value=0.48 Score=41.39 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=50.2
Q ss_pred HHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcceEe
Q 011260 133 KIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWEFA 201 (490)
Q Consensus 133 KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~eF~ 201 (490)
=|.++|.|+++.++|+|...+.-|.+.|++..++.--.+ -=..-||...-|-|..|.=+ |+...+..|.
T Consensus 6 FLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~ 79 (110)
T 1awc_A 6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYK 79 (110)
T ss_dssp HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEE
T ss_pred HHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEe
Confidence 367889999999999999999999999999888743322 11356788899988888533 3444445554
No 5
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=86.42 E-value=0.53 Score=40.57 Aligned_cols=76 Identities=16% Similarity=0.341 Sum_probs=54.7
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCc----ccccCCcceE
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGF----KKIHSNRWEF 200 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF 200 (490)
|......=|.++|+|+++.++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-= +||...+..|
T Consensus 6 g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vY 85 (102)
T 2ypr_A 6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAY 85 (102)
T ss_dssp SSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEE
T ss_pred CcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence 3345556677889999999999999889999999998888732221 1146789999999988743 3555455555
Q ss_pred e
Q 011260 201 A 201 (490)
Q Consensus 201 ~ 201 (490)
.
T Consensus 86 k 86 (102)
T 2ypr_A 86 R 86 (102)
T ss_dssp E
T ss_pred E
Confidence 4
No 6
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=85.75 E-value=0.55 Score=40.23 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=47.0
Q ss_pred CcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccC
Q 011260 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYG 189 (490)
Q Consensus 128 ~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YG 189 (490)
.....=|.++|.|+.+.++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-
T Consensus 6 ~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred eeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 34455567788999999999999988999999998888742221 113678888888888774
No 7
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=85.64 E-value=0.68 Score=40.14 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=55.7
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccCc----ccccCCcceE
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYGF----KKIHSNRWEF 200 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF 200 (490)
|......=|.++|+|+++.++|+|...+..|.+.|++..++.--. +-=..-||..+-|-|..|-= +||...+..|
T Consensus 10 g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vY 89 (106)
T 4avp_A 10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY 89 (106)
T ss_dssp -CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEE
T ss_pred CcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEE
Confidence 444566667889999999999999998889999999988873222 11146789999999988742 3555556666
Q ss_pred e
Q 011260 201 A 201 (490)
Q Consensus 201 ~ 201 (490)
.
T Consensus 90 k 90 (106)
T 4avp_A 90 K 90 (106)
T ss_dssp E
T ss_pred E
Confidence 5
No 8
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=84.62 E-value=0.62 Score=39.55 Aligned_cols=75 Identities=15% Similarity=0.352 Sum_probs=55.3
Q ss_pred CcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccCc----ccccCCcceEec
Q 011260 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYGF----KKIHSNRWEFAN 202 (490)
Q Consensus 128 ~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF~h 202 (490)
.....=|.++|.|++..++|+|...+.-|.+.|+++.++.--. +-=..-||..+-|-|..|-= +|+...+..|..
T Consensus 5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F 84 (93)
T 1bc8_C 5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 84 (93)
T ss_dssp CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 4455667889999999999999988889999999988874322 11246789999999988842 245545666654
No 9
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.22 E-value=1.2 Score=39.37 Aligned_cols=77 Identities=14% Similarity=0.288 Sum_probs=55.6
Q ss_pred CCCcHHHHHHhhccCCCCCCceEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhcc---C-cccccCCcce
Q 011260 126 GPPPFLRKIYEMVEDPETDPVVSWSL-NRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTY---G-FKKIHSNRWE 199 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~Y---G-F~Kv~~~~~e 199 (490)
+......=|.++|.|+.+.++|+|.. ++.-|.+.|++..++.--.+ -=..-||..+-|-|..| | .+|+...+..
T Consensus 7 g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~v 86 (118)
T 2dao_A 7 GCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLL 86 (118)
T ss_dssp CCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSE
T ss_pred cchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEE
Confidence 34556667888999999999999987 45689999999887743222 11357899999999988 3 3355555555
Q ss_pred Eec
Q 011260 200 FAN 202 (490)
Q Consensus 200 F~h 202 (490)
|..
T Consensus 87 Y~F 89 (118)
T 2dao_A 87 FRF 89 (118)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 10
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=82.78 E-value=1.2 Score=41.52 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=58.2
Q ss_pred CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcce
Q 011260 125 VGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWE 199 (490)
Q Consensus 125 ~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~e 199 (490)
.|+.....=|.++|.|+...++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-=+ |+...+..
T Consensus 62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv 141 (171)
T 2nny_A 62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 141 (171)
T ss_dssp CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTE
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEE
Confidence 35667777788999999999999999999999999999988743221 11356799999999888644 45445555
Q ss_pred Eec
Q 011260 200 FAN 202 (490)
Q Consensus 200 F~h 202 (490)
|..
T Consensus 142 Y~F 144 (171)
T 2nny_A 142 YRF 144 (171)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 11
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=82.68 E-value=0.97 Score=41.25 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCCCcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcce
Q 011260 125 VGPPPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWE 199 (490)
Q Consensus 125 ~~~~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~e 199 (490)
.++.....=|.++|.|+...++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-=+ |+...+..
T Consensus 37 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv 116 (146)
T 1gvj_A 37 SGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV 116 (146)
T ss_dssp CCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSE
T ss_pred CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 46667777888999999999999999999999999999988743221 11356799999999888544 55545566
Q ss_pred Eec
Q 011260 200 FAN 202 (490)
Q Consensus 200 F~h 202 (490)
|..
T Consensus 117 Y~F 119 (146)
T 1gvj_A 117 YRF 119 (146)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.23 E-value=11 Score=31.24 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
+..|++.||.++..|..|...++.....+..+...+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456788888888888777777444333333333333
No 13
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=80.18 E-value=2.1 Score=36.87 Aligned_cols=74 Identities=14% Similarity=0.252 Sum_probs=50.0
Q ss_pred cHHHHHHhhccCCC-CCCceEEcCC-CCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCc----ccccCCcceEe
Q 011260 129 PFLRKIYEMVEDPE-TDPVVSWSLN-RNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGF----KKIHSNRWEFA 201 (490)
Q Consensus 129 ~Fl~KLy~mVedp~-~~~iI~Ws~d-G~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF----~Kv~~~~~eF~ 201 (490)
....=|.++|.|++ ..++|+|... ..-|.+.|++..++.--.+ -=..-||..+-|-|..|-= +|+...+..|.
T Consensus 6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~ 85 (103)
T 3jtg_A 6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 85 (103)
T ss_dssp SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence 34445677889988 5689999874 5689999998888632211 1146789999999988832 34544555554
Q ss_pred c
Q 011260 202 N 202 (490)
Q Consensus 202 h 202 (490)
.
T Consensus 86 F 86 (103)
T 3jtg_A 86 F 86 (103)
T ss_dssp B
T ss_pred e
Confidence 3
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=79.84 E-value=1.4 Score=40.67 Aligned_cols=75 Identities=13% Similarity=0.349 Sum_probs=55.1
Q ss_pred CcHHHHHHhhccCCCCCCceEEcCCCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccCcc----cccCCcceEec
Q 011260 128 PPFLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYGFK----KIHSNRWEFAN 202 (490)
Q Consensus 128 ~~Fl~KLy~mVedp~~~~iI~Ws~dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YGF~----Kv~~~~~eF~h 202 (490)
.....=|.++|.|+...++|+|...+.-|.+.|+++.++.--.+ -=..-||..+-|-|..|-=+ |+...+..|..
T Consensus 6 i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 6 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp CCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 34555678889999999999999888899999999888743321 12467899999999888533 45545566654
No 15
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=72.30 E-value=2.9 Score=36.33 Aligned_cols=76 Identities=14% Similarity=0.298 Sum_probs=53.4
Q ss_pred CCCcHHHHHHhhccCCC-CCCceEEcC-CCCeEEEeCCchhhhhhccc-ccCCCChhHHHHHhhccC----cccccCCcc
Q 011260 126 GPPPFLRKIYEMVEDPE-TDPVVSWSL-NRNSFIVWESHDFSENLLPK-YFKHKNFSSFIRQLNTYG----FKKIHSNRW 198 (490)
Q Consensus 126 ~~~~Fl~KLy~mVedp~-~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP~-yFKhsnfsSFvRQLN~YG----F~Kv~~~~~ 198 (490)
+......=|.++|.||+ ..++|+|.. +..-|.+.|+++.++.--.+ -=..-||..+-|-|..|- .+||. .+.
T Consensus 7 g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~-~rl 85 (107)
T 1wwx_A 7 GSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RRL 85 (107)
T ss_dssp SSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS-SSS
T ss_pred CcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc-ceE
Confidence 44566777889999886 567999986 46789999998888742221 113678999999998884 23553 555
Q ss_pred eEec
Q 011260 199 EFAN 202 (490)
Q Consensus 199 eF~h 202 (490)
.|..
T Consensus 86 vY~F 89 (107)
T 1wwx_A 86 VYKF 89 (107)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.11 E-value=32 Score=29.91 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
...|+..|++....|..||..++.+...+...+..++.|....
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~ 76 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA 76 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988888888888887776543
No 17
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=66.52 E-value=3.5 Score=35.16 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=49.0
Q ss_pred CCcHHHHHHhhccCCC-CCCceEEcC-CCCeEEEeCCchhhhhhcc-cccCCCChhHHHHHhhccCcc
Q 011260 127 PPPFLRKIYEMVEDPE-TDPVVSWSL-NRNSFIVWESHDFSENLLP-KYFKHKNFSSFIRQLNTYGFK 191 (490)
Q Consensus 127 ~~~Fl~KLy~mVedp~-~~~iI~Ws~-dG~SFVI~d~~~F~~~VLP-~yFKhsnfsSFvRQLN~YGF~ 191 (490)
......=|.++|.||+ ..++|+|.. .+.-|.+.|+++.++.--. +-=..-||..+-|-|..|--+
T Consensus 10 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 10 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred eeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 4456666888999986 578999984 6788999999988874222 112367899999999998644
No 18
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=68.97 E-value=1.3 Score=39.60 Aligned_cols=35 Identities=11% Similarity=0.443 Sum_probs=28.6
Q ss_pred HHHHhhccCCCCCCceEEcCC-CCeEEEeCCchhhh
Q 011260 132 RKIYEMVEDPETDPVVSWSLN-RNSFIVWESHDFSE 166 (490)
Q Consensus 132 ~KLy~mVedp~~~~iI~Ws~d-G~SFVI~d~~~F~~ 166 (490)
.=|.++|.|+.+.++|+|... +.-|.+.|++..++
T Consensus 9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VAr 44 (128)
T 2lf8_A 9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLAR 44 (128)
Confidence 346778999999999999874 45899999987766
No 19
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=64.95 E-value=3.7 Score=34.50 Aligned_cols=69 Identities=13% Similarity=0.338 Sum_probs=47.3
Q ss_pred HHHHhhccCCCCCCceEEcC-CCCeEEEe--CCchhhhhhcccc--cCCCChhHHHHHhhccC----cccccCCcceEe
Q 011260 132 RKIYEMVEDPETDPVVSWSL-NRNSFIVW--ESHDFSENLLPKY--FKHKNFSSFIRQLNTYG----FKKIHSNRWEFA 201 (490)
Q Consensus 132 ~KLy~mVedp~~~~iI~Ws~-dG~SFVI~--d~~~F~~~VLP~y--FKhsnfsSFvRQLN~YG----F~Kv~~~~~eF~ 201 (490)
.=|.++|.|+++.++|+|.. +..-|-+. |+++.++.--.+= =..-||..+-|-|..|. -+|+. .+..|.
T Consensus 6 qFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~ 83 (89)
T 1pue_E 6 QFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQ 83 (89)
T ss_dssp HHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEE
T ss_pred HHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEe
Confidence 34678899999999999986 44668775 7777777432221 13678999999998884 23454 455554
No 20
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.54 E-value=9.4 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 249 LRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 249 LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
+++...+.+++|..|+.|+..+..|+..|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777776666665544
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.73 E-value=14 Score=28.04 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQM 274 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL 274 (490)
.+++.||.++..|.+++..|+++...+..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666666666666655554443
No 22
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=62.03 E-value=18 Score=35.09 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=34.5
Q ss_pred ceEecCCCcCCccccchhhcccCCCCCCCCCCcccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 198 WEFANEKFRGGKKHLLKNIKRRSRFNKAQDGTVTLACVDSAKFGVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 198 ~eF~h~~F~RG~~~LL~~IkRk~~~~~~q~~~~~~a~~e~~~~gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
|-=.||.|.-.+++||..++=..+. .+.. . .....+..||+++..++.++..|
T Consensus 39 yL~~~PdFf~~~~~Ll~~L~lph~~----~~aV----------S-------------L~erQ~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 39 YLSQHPEFFVEHDELIPELRIPHQP----GDAV----------S-------------LVERQVRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp --------------------------------C----------H-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHhhCHHHHHhCCCCCCC----CCcc----------c-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3349999999999999988743221 1111 0 11223556677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchh
Q 011260 278 AERIRCAECKQQQMLNFFAKIAKYPNF 304 (490)
Q Consensus 278 eeRl~~~E~kQqQml~FLakalqnP~F 304 (490)
-+.-+..++..+++..+..+++.-.+|
T Consensus 92 i~~A~~Ne~l~~~~~~l~l~LL~a~sl 118 (252)
T 3e98_A 92 MDVARENDRLFDKTRRLVLDLLDATSL 118 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 777888888888888888777765443
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.89 E-value=31 Score=30.08 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
...|+..|++....|..||..++.+...+...+..++.|....
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~ 78 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ 78 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888877777777777776543
No 24
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.04 E-value=63 Score=28.06 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 253 QKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFA 296 (490)
Q Consensus 253 q~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLa 296 (490)
++.|+.||..|+.....+..++..+|..-...|+.-......|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 55688888888888888888888888888777776665555444
No 25
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=58.20 E-value=27 Score=25.84 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
+...+.+||+|+-.|...-+.|..-..+++.++..++..+
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 4456777888877776666666666666666666665544
No 26
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.68 E-value=22 Score=27.40 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQD 268 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq 268 (490)
|+.+++.|..++..|..+|..|+.+..
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 27
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.51 E-value=50 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~me 278 (490)
+-.+++.||.++..|.+|+..--++...++++-..|.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 3445666666666655555554444444444444443
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.03 E-value=39 Score=30.11 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.|+-.++++...|..++..+..+.+.+..++.....++
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333
No 29
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.96 E-value=23 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDES 270 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~ 270 (490)
++.+++.|..++..|..+|..|+.+...+
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544433
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.36 E-value=27 Score=26.46 Aligned_cols=31 Identities=13% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 251 NDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 251 rDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.|..+|.+|+..|++++..+..++..+..|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544443
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.22 E-value=62 Score=28.79 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
+..+.+.|..+...+..|+..|+++......++..+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333333
No 32
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.84 E-value=58 Score=33.57 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
+++.|+.+...|..++..|.++.+.+..++..+++++...+..-.++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666666666666665554433333
No 33
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=47.03 E-value=93 Score=27.17 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDES 270 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~ 270 (490)
-+..|+.|+++...|..|+.+++.+.+..
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~ 41 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRV 41 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999888876643
No 34
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.95 E-value=84 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 253 QKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 253 q~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
+..+..|+.+.|..+..+..+|+..+.|.+.
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444433
No 35
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=42.91 E-value=64 Score=27.07 Aligned_cols=40 Identities=15% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.+...|..++..|+.|+..|++++..+..++..+..++..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777888887777777777777666543
No 36
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.00 E-value=48 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQ 267 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQ 267 (490)
.|+..++.|...+..|..|+.+|+.-.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 367788888888888999998888654
No 37
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=41.60 E-value=1.4e+02 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAE 285 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E 285 (490)
.+..++..|+.+-..|..||..|..+...+..+|..++.......
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888999999998888888888887765554443
No 38
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.28 E-value=34 Score=28.08 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
|...++.|-.++.+|..|+..+++-...+..++..|
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555444333333333
No 39
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=40.77 E-value=76 Score=23.16 Aligned_cols=9 Identities=33% Similarity=0.638 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 011260 243 EMELETLRN 251 (490)
Q Consensus 243 e~Ele~LKr 251 (490)
.+|++.||+
T Consensus 6 kselqalkk 14 (48)
T 1g6u_A 6 KSELQALKK 14 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 40
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=40.42 E-value=35 Score=32.01 Aligned_cols=63 Identities=17% Similarity=0.368 Sum_probs=49.6
Q ss_pred CCcHHHH-HHhhccCCCCCCceEEcCCCCeEEE-eCCchhhhhh-ccccc-CCCChhHHHHH-----hhccCc
Q 011260 127 PPPFLRK-IYEMVEDPETDPVVSWSLNRNSFIV-WESHDFSENL-LPKYF-KHKNFSSFIRQ-----LNTYGF 190 (490)
Q Consensus 127 ~~~Fl~K-Ly~mVedp~~~~iI~Ws~dG~SFVI-~d~~~F~~~V-LP~yF-KhsnfsSFvRQ-----LN~YGF 190 (490)
...||.| +|.++=.-.- +...|+++++.|+| .|.+-|..-| ||+.. ..-+|+.|+.= |.+-||
T Consensus 86 ~l~fI~k~~Wk~lfgk~~-d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITP-NITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHSSCCC-CCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 3689966 9988876554 46889999999999 7877766654 78776 67799999854 899999
No 41
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=40.12 E-value=42 Score=22.83 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKL 263 (490)
Q Consensus 246 le~LKrDq~~L~~El~kL 263 (490)
+..||++..+|.-||..|
T Consensus 11 iaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 11 IAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.02 E-value=1.1e+02 Score=31.98 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
+..+++.++.+.+.+..++.+++++.+....+++.+++++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQEN 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhh
Confidence 3344444555555555555555554444444444333333
No 43
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=38.68 E-value=15 Score=28.95 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~me 278 (490)
|..++.+.++++..|..++..+..||..+..-|..+|
T Consensus 17 L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E 53 (64)
T 3t97_C 17 LHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLE 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444443333
No 44
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=38.51 E-value=28 Score=33.01 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=49.2
Q ss_pred CCcHHHH-HHhhccCCCCCCceEEcCCCCeEEE-eCCchhhhhh-cccccCCCChhHHHHH-----hhccCcc
Q 011260 127 PPPFLRK-IYEMVEDPETDPVVSWSLNRNSFIV-WESHDFSENL-LPKYFKHKNFSSFIRQ-----LNTYGFK 191 (490)
Q Consensus 127 ~~~Fl~K-Ly~mVedp~~~~iI~Ws~dG~SFVI-~d~~~F~~~V-LP~yFKhsnfsSFvRQ-----LN~YGF~ 191 (490)
...||.| +|.++=.-.- +...|+++++.|+| .|.+-|..-| ||.-.+.-+|+.|+.= |.+-||.
T Consensus 83 ~l~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 83 TADVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 3588866 8888865443 47889999999999 7877666544 7876677889999854 8899998
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.31 E-value=22 Score=27.22 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQD 268 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq 268 (490)
|+.+++.|..++..|..+|..|+.+..
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=38.16 E-value=51 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 254 KTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 254 ~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
..|..++..|.+++..+..++..++..+
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444444333
No 47
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.10 E-value=1.5e+02 Score=24.22 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 256 LRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFF 295 (490)
Q Consensus 256 L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FL 295 (490)
|...|..|+++...++.++..+.-.+..+.++|..+..=|
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555555555444333
No 48
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.66 E-value=40 Score=23.54 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.++..++.|-..+..|..||.+|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677888888888899999988875
No 49
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=36.46 E-value=66 Score=22.79 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQQQD 268 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQqQq 268 (490)
.|+..++.|-..+..|..|+.+|+.-.-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4677888888888889999988887543
No 50
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.40 E-value=1.5e+02 Score=28.19 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=3.3
Q ss_pred ccCcCCC
Q 011260 392 MDDDGLC 398 (490)
Q Consensus 392 ~~~~~~~ 398 (490)
|...|-|
T Consensus 195 ~v~~~~C 201 (256)
T 3na7_A 195 TIKKQAC 201 (256)
T ss_dssp ECBTTBC
T ss_pred EeeCCcc
Confidence 4444545
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.89 E-value=97 Score=31.87 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESLCQMSA 276 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~ 276 (490)
+.+++.|+++...|..++..++.+...+..++..
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.46 E-value=2.6e+02 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLR 264 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLr 264 (490)
.+..|+.+...|..+|..|.
T Consensus 69 ~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444444
No 53
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.94 E-value=52 Score=27.33 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
.+..++..|.+++..+..++..|+..+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444
No 54
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.93 E-value=1e+02 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMS 275 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~ 275 (490)
.++.+||.-+..|...|+.|+.+.-....++.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666554444433
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.78 E-value=1.9e+02 Score=30.07 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=3.4
Q ss_pred cHHHHHHHH
Q 011260 242 VEMELETLR 250 (490)
Q Consensus 242 Le~Ele~LK 250 (490)
++.++.+..
T Consensus 468 l~~~~~~~~ 476 (597)
T 3oja_B 468 LTNEQIQQE 476 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 56
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=34.54 E-value=1.5e+02 Score=28.92 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAKIAKYPNFVQQLVHK 311 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLakalqnP~FlqqLvq~ 311 (490)
+..|++....+..++.-|-=+..-+..++..+..+|..+..+++.++.=|+++=++-.||..-+..
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~ 216 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQ 216 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456778888888877777777777788899999999999999999999999998888888766643
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.51 E-value=1.8e+02 Score=25.17 Aligned_cols=46 Identities=20% Similarity=0.139 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECK 287 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~k 287 (490)
|..|+..|+..+..|..-|..|.|.+..+..+-.+...-+..+|.|
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 5566666666666666666666666655554444433344444444
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=34.12 E-value=42 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQM 274 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL 274 (490)
|..|+.....|..|+..|++++..+..++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444444443
No 59
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.69 E-value=1.9e+02 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDES 270 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~ 270 (490)
+..++..|.++...|..+|..++.+...+
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666555544433
No 60
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.64 E-value=1.2e+02 Score=22.97 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIR 282 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~ 282 (490)
|..+|..|..+-..|..++..|+...+..+.+-.+-.+||.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666666666666555555555555654
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.87 E-value=2.3e+02 Score=26.68 Aligned_cols=58 Identities=7% Similarity=0.076 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcCchhHHHHHH
Q 011260 253 QKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQML-------NFFAKIAKYPNFVQQLVH 310 (490)
Q Consensus 253 q~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml-------~FLakalqnP~FlqqLvq 310 (490)
.+.|..||..|+.....+..++..+|.....+|+.-..+. ..|-+++-...|+..=+.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544444444433332 234444444445544444
No 62
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.83 E-value=1.7e+02 Score=25.20 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 255 TLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQMLNFFAK 297 (490)
Q Consensus 255 ~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQml~FLak 297 (490)
+|.+|+...+++...+..++..+...+..+|+.=.-..+-|+.
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555544444444443
No 63
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.66 E-value=73 Score=26.06 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
|..|+.....+..++..|+++++.+..++..|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555566666666666665555555443
No 64
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=32.41 E-value=1.7e+02 Score=22.33 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~ 284 (490)
.++|-++-+.|..|-..||++.+....|+..+|..--.|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 467788899999999999999999999999888766555
No 65
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=31.79 E-value=78 Score=23.87 Aligned_cols=30 Identities=3% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011260 270 SLCQMSAVAERIRCAECKQQQMLNFFAKIA 299 (490)
Q Consensus 270 ~~~QL~~meeRl~~~E~kQqQml~FLakal 299 (490)
+..++..+|+++..+++|..+++..+-.++
T Consensus 15 ~~~Rl~rVE~qV~~md~KLd~l~~~~~~~l 44 (49)
T 3bj4_A 15 IGARLNRVEDKVTQLDQRLALITDMLHQLL 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888888777776666544
No 66
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=31.78 E-value=1.1e+02 Score=20.73 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQ 265 (490)
|+..||.+..+|..||..|+=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555555555443
No 67
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.39 E-value=1.3e+02 Score=31.47 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=34.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 239 KFGVEMELETLRNDQKTLRLEMLKLRQQ---QDESLCQMSAVAERIRCAECKQQQMLN 293 (490)
Q Consensus 239 ~~gLe~Ele~LKrDq~~L~~El~kLrQq---Qq~~~~QL~~meeRl~~~E~kQqQml~ 293 (490)
...+..+++.|+.+++.+.++|.+++.. ...+..++..+.+++..++.+...+-.
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888765432 234455555566666655555444433
No 68
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.39 E-value=2.2e+02 Score=23.43 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
|+..|+++=.-...|+.||..|++++..+..+...+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666667777777776666666553
No 69
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.85 E-value=2e+02 Score=23.76 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 251 NDQKTLRLEMLK---LRQQQDESLCQMSAVAERIRCAECKQQQML 292 (490)
Q Consensus 251 rDq~~L~~El~k---LrQqQq~~~~QL~~meeRl~~~E~kQqQml 292 (490)
.=|.+|..||.. +..+...++.-..+++.+++..+.+.+.+.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666653 222333333334445556665555555543
No 70
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.73 E-value=1.1e+02 Score=30.80 Aligned_cols=8 Identities=38% Similarity=0.385 Sum_probs=3.5
Q ss_pred cceehhhh
Q 011260 458 LFHELEDL 465 (490)
Q Consensus 458 ~~~~~edl 465 (490)
+.|+|||.
T Consensus 166 LrI~L~d~ 173 (323)
T 1lwu_C 166 LRIDLTDW 173 (323)
T ss_dssp EEEEEECT
T ss_pred EEEEEEcC
Confidence 44444443
No 71
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.50 E-value=1.7e+02 Score=27.96 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
.+++.|+.....|..++..++.++..+...+.++..|...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888888887754
No 72
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.16 E-value=1.4e+02 Score=31.81 Aligned_cols=57 Identities=7% Similarity=0.073 Sum_probs=37.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 239 KFGVEMELETLRNDQKTLRLEMLKLRQQ---QDESLCQMSAVAERIRCAECKQQQMLNFF 295 (490)
Q Consensus 239 ~~gLe~Ele~LKrDq~~L~~El~kLrQq---Qq~~~~QL~~meeRl~~~E~kQqQml~FL 295 (490)
...+..+++.|+.+++.+.++|..++.. ...+..++..+.++|..++.+..++-.-|
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888766542 23455566666666666666655544433
No 73
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.87 E-value=2.1e+02 Score=33.27 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=8.3
Q ss_pred CCcccCCCCccccccc
Q 011260 21 SNLFPKPKSCQDVAME 36 (490)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (490)
..-|-|.|-..+|.-+
T Consensus 545 ~~~F~I~HyAG~V~Y~ 560 (1080)
T 2dfs_A 545 NKAFIIKHFADKVEYQ 560 (1080)
T ss_dssp SSEEEEECSSCEEEEE
T ss_pred CCceEEEecceEEEEe
Confidence 3445555665555443
No 74
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.80 E-value=40 Score=26.20 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQ 265 (490)
|+.+++.|+.++..|..|+..|++
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444
No 75
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.78 E-value=64 Score=22.47 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQ 265 (490)
++..++.|-..+..|..|+.+|+.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567788888888888888888775
No 76
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.73 E-value=2e+02 Score=30.66 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=38.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 239 KFGVEMELETLRNDQKTLRLEMLKLRQQ-----------QDESLCQMSAVAERIRCAECKQQQMLNFF 295 (490)
Q Consensus 239 ~~gLe~Ele~LKrDq~~L~~El~kLrQq-----------Qq~~~~QL~~meeRl~~~E~kQqQml~FL 295 (490)
...+..+++.|+.+++.+.++|..++.. ...+..++..+.++|..++.+..++-.-|
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888876543 23566677777777777766655554433
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.90 E-value=2.4e+02 Score=25.75 Aligned_cols=25 Identities=4% Similarity=0.036 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 262 KLRQQQDESLCQMSAVAERIRCAEC 286 (490)
Q Consensus 262 kLrQqQq~~~~QL~~meeRl~~~E~ 286 (490)
.++.++..+..|+..++++++.++.
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 78
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.67 E-value=68 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.++..++.|-..+..|..|+.+|+.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3567778888888888888888775
No 79
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=28.41 E-value=1e+02 Score=23.04 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 256 LRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 256 L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
-...|..|.++...+-.+|.++|.||
T Consensus 21 v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 21 VEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556667776666666666665554
No 80
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.73 E-value=2.2e+02 Score=26.76 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 011260 277 VAERIRCAECK 287 (490)
Q Consensus 277 meeRl~~~E~k 287 (490)
+..+|+.+|+.
T Consensus 107 l~~~ireLEq~ 117 (189)
T 2v71_A 107 LHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 81
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.44 E-value=2.5e+02 Score=23.30 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 257 RLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 257 ~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
..||...+++...+..++.....+|
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333433333333
No 82
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.25 E-value=1.7e+02 Score=26.79 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEML 261 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~ 261 (490)
++++|+.++..++..|.
T Consensus 6 e~~~Le~Ek~~~~~rI~ 22 (155)
T 2aze_A 6 ECQNLEVERQRRLERIK 22 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555444443333
No 83
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.01 E-value=2.4e+02 Score=22.43 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQ 290 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQ 290 (490)
+..+++........+..||..|+...+.+..++...++|+.....+...
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 84
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.79 E-value=1.9e+02 Score=21.11 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 011260 256 LRLEMLKLRQ 265 (490)
Q Consensus 256 L~~El~kLrQ 265 (490)
|..|++.|+.
T Consensus 5 lkselqalkk 14 (48)
T 1g6u_A 5 LKSELQALKK 14 (48)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 85
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.60 E-value=1.7e+02 Score=29.48 Aligned_cols=21 Identities=10% Similarity=-0.138 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011260 264 RQQQDESLCQMSAVAERIRCA 284 (490)
Q Consensus 264 rQqQq~~~~QL~~meeRl~~~ 284 (490)
..+.+.+..++..++.+|+.+
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433
No 86
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.57 E-value=78 Score=22.20 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.++..++.|-..+..|..||.+|+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3667788888888888888888775
No 87
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=26.53 E-value=79 Score=22.02 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQ 265 (490)
|+..++.|-..+..|..||.+|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567777777778888888887764
No 88
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.40 E-value=1.6e+02 Score=24.17 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
...-+..|......|..+|..|..+...+..++..++.+|+.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777778887777777776666666655544
No 89
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.80 E-value=82 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.++..++.|-..+..|..|+.+||.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3567788888888888888888775
No 90
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.73 E-value=71 Score=25.48 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQ 265 (490)
++..|......|..|...|+.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.64 E-value=1.8e+02 Score=29.99 Aligned_cols=23 Identities=4% Similarity=-0.107 Sum_probs=10.5
Q ss_pred ceehhhhhcCCCCCcccHHHHhh
Q 011260 459 FHELEDLIGKSHSWGGYVNELAE 481 (490)
Q Consensus 459 ~~~~edlv~~~~~W~~~~~~lv~ 481 (490)
.+-|++|...+..=.+++..|++
T Consensus 223 ~~~v~gl~~~~v~s~~e~~~ll~ 245 (412)
T 3u06_A 223 DIYVSNITEETVLDPNHLRHLMH 245 (412)
T ss_dssp SEEETTCCCEECCSHHHHHHHHH
T ss_pred CEEEcceEEEEeCCHHHHHHHHH
Confidence 34455555444333345544443
No 92
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.55 E-value=92 Score=27.14 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=2.8
Q ss_pred cHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKT 255 (490)
Q Consensus 242 Le~Ele~LKrDq~~ 255 (490)
|.++++.||+++..
T Consensus 4 l~~~~~~l~~~~~~ 17 (182)
T 3kqg_A 4 LNAQIPELKSDLEK 17 (182)
T ss_dssp ---------CHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 45667777776543
No 93
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.17 E-value=1.4e+02 Score=24.53 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRL 258 (490)
Q Consensus 246 le~LKrDq~~L~~ 258 (490)
++.+...+..|..
T Consensus 15 lq~~E~rN~~Le~ 27 (79)
T 3cvf_A 15 VQDLETRNAELEH 27 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHH
Confidence 3333333333333
No 94
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.11 E-value=86 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=19.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.++..++.|-..+..|..|+.+|+.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3667788888888888888888875
No 95
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.79 E-value=88 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 241 GVEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 241 gLe~Ele~LKrDq~~L~~El~kLrQ 265 (490)
.|+..++.|-..+..|..|+.+|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3667788888888888888888875
No 96
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=24.67 E-value=1.1e+02 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRC 283 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~ 283 (490)
++..+++|+.-+..+..-|+.+.|..-.+.+.+..++.|+..
T Consensus 26 ID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~ 67 (72)
T 2xu6_A 26 IEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDF 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555433
No 97
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.26 E-value=91 Score=25.12 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQ 273 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~Q 273 (490)
|..|+.....|..|+..|+.++..+..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555554444333
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.25 E-value=2.8e+02 Score=22.29 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 011260 268 DESLCQMSAVAERIRC 283 (490)
Q Consensus 268 q~~~~QL~~meeRl~~ 283 (490)
+.+..++..++.+|..
T Consensus 17 ~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 99
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.67 E-value=2.4e+02 Score=29.11 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=6.4
Q ss_pred cHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLR 257 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~ 257 (490)
|+.|+..|++....|.
T Consensus 8 l~~el~~~~~~~~~l~ 23 (412)
T 3u06_A 8 LSTEVVHLRQRTEELL 23 (412)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 100
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.40 E-value=66 Score=21.17 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 011260 248 TLRNDQKTLRLEMLK 262 (490)
Q Consensus 248 ~LKrDq~~L~~El~k 262 (490)
+||..+..|.+||..
T Consensus 4 rlkqknarlkqeiaa 18 (28)
T 3ra3_B 4 RLKQKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH
Confidence 344444444444433
No 101
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.85 E-value=1.9e+02 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQD 268 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq 268 (490)
.+++.|..++..|..+|..|+.+..
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445444444444433
No 102
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.53 E-value=1.6e+02 Score=30.46 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=28.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 240 FGVEMELETLRNDQKTLRLEMLK-LRQQQDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 240 ~gLe~Ele~LKrDq~~L~~El~k-LrQqQq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
..+..+++.|+.+++.+.++|.. -.+....+..++..+.+++..++.+..++
T Consensus 38 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 38 QELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777766642 11122334445555555555555544443
No 103
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.89 E-value=3.6e+02 Score=23.05 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=11.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQ 265 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQ 265 (490)
+..|++.++..+..|...|..+++
T Consensus 48 L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 48 LRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 104
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=21.66 E-value=3.9e+02 Score=23.09 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 243 EMELETLRNDQKTLRLEMLKLRQQQDESL 271 (490)
Q Consensus 243 e~Ele~LKrDq~~L~~El~kLrQqQq~~~ 271 (490)
..|++.||.+......-|.+++.-+..+.
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~rH~~~el~ 51 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKHNHYQKQLE 51 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899888888888888887666554
No 105
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.54 E-value=1.5e+02 Score=32.25 Aligned_cols=67 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhc
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCA---------------------ECKQQQMLNFFAKIAK 300 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~---------------------E~kQqQml~FLakalq 300 (490)
|+..++.||+..+.-.+-|..||....++..+|+.||--|..+ +..|+||....++=+.
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccC
Q ss_pred CchhHHHH
Q 011260 301 YPNFVQQL 308 (490)
Q Consensus 301 nP~FlqqL 308 (490)
..--.|-|
T Consensus 195 p~~~~q~L 202 (562)
T 3ghg_A 195 PSRDRQHL 202 (562)
T ss_dssp CSCCCC--
T ss_pred Cccccccc
No 106
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.45 E-value=5e+02 Score=24.49 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 246 LETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 246 le~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
|..|..++..|..++....++...++.|++.++.++
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444433333333344444443333
No 107
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.35 E-value=68 Score=26.09 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011260 256 LRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 256 L~~El~kLrQqQq~~~~QL~~me 278 (490)
+...+..|.+++..+..++..|+
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 108
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.28 E-value=2.9e+02 Score=21.36 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 258 LEMLKLRQQQDESLCQMSAVAERIRCAECKQQQ 290 (490)
Q Consensus 258 ~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQ 290 (490)
..+.+|+|.+..+-.+++.++.....+|+....
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieR 43 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIER 43 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999888888999988777776665544
No 109
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.12 E-value=1.4e+02 Score=26.24 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQM 274 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL 274 (490)
+.+||..|+.......+|+.+||.+.+.+..++
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
No 110
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.79 E-value=2.1e+02 Score=23.46 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 245 ELETLRNDQKTLRLEMLKLRQQQDESLCQMSAV 277 (490)
Q Consensus 245 Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~m 277 (490)
.+..++.....+..++..|+..+..+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666655555444444443
No 111
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.24 E-value=2e+02 Score=28.13 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 244 MELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERIRCAECKQQQM 291 (490)
Q Consensus 244 ~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl~~~E~kQqQm 291 (490)
.+++.|-=.++....||..+-.+.+.+..--+.+-+||..+|+..-.+
T Consensus 163 ~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~L 210 (242)
T 3uux_B 163 NSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLL 210 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444334444555555555555444444444455555555544333
No 112
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=20.16 E-value=4.1e+02 Score=23.94 Aligned_cols=6 Identities=0% Similarity=0.169 Sum_probs=2.2
Q ss_pred hhHHHh
Q 011260 364 MQSELT 369 (490)
Q Consensus 364 ~~se~~ 369 (490)
++.-|.
T Consensus 135 ~~E~Md 140 (167)
T 4gkw_A 135 AAENMD 140 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 113
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.06 E-value=3e+02 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 242 VEMELETLRNDQKTLRLEMLKLRQQQDESLCQMSAVAERI 281 (490)
Q Consensus 242 Le~Ele~LKrDq~~L~~El~kLrQqQq~~~~QL~~meeRl 281 (490)
|..|...|..+......||..|+.+...+++++...+.++
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4445555555555555555555555555555554444443
No 114
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.03 E-value=4.2e+02 Score=22.77 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011260 249 LRNDQKTLRLEMLKLRQQQDESLCQMSAVA 278 (490)
Q Consensus 249 LKrDq~~L~~El~kLrQqQq~~~~QL~~me 278 (490)
++.+......++..|.++...++..+..|+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555554
Done!