BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011262
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1
PE=1 SV=1
Length = 676
Score = 202 bits (513), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 151/473 (31%), Positives = 228/473 (48%), Gaps = 70/473 (14%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
F+ +AV+++ T+GR+ V A+CLYL CR + P +L+D S+ L +NVY LG +L L +
Sbjct: 113 FFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLAR 172
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCDTARDILASMKRDWITTGRKPSG 141
L I + +DP +++ +F L G N +V TA +L MKRDW+ TGR+PSG
Sbjct: 173 ELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRPSG 227
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA----- 196
LCGAAL V+A H + + +++ +V +CE+TL KRL EFE+T + LTI++FM
Sbjct: 228 LCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEE 287
Query: 197 --------------RKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCY 242
R K+L + ++ L ++S + + + +P A G +
Sbjct: 288 ECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQDAIEIELENSRPKAKGALANLS 347
Query: 243 EEFMTISEGLEGGADPPAFQVAERERMVKASAEENSSFERE---SDSPFMSRVDKVQSPE 299
++ G + + P + E E + A++ N F RE D + D
Sbjct: 348 KD----GSGEDATSSPRCEEDTEDEELEAAASHMNKDFYRELLGDDDGSEAAGDPDGGSR 403
Query: 300 P---ESIGVPKNCTTQTASNEGEGDHTK----TPGVDATTEASDGSDNFSDIDDFEVDGY 352
P ES+ P TA++ G D + +P D + DG + S IDD E+D Y
Sbjct: 404 PLALESLLGP----LPTAASLGISDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRY 459
Query: 353 LHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAA 412
+ NE E K +W N EYL EQ KEA A K EL
Sbjct: 460 ILNESEARVKAELWMRENAEYLREQKEKEARIAKEK------------------ELGIY- 500
Query: 413 AAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKL 465
KE + K++ + + A TA EA +ML +K++SSKINY VL L
Sbjct: 501 --------KEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKINYSVLRDL 545
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1
PE=1 SV=1
Length = 677
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 153/494 (30%), Positives = 234/494 (47%), Gaps = 69/494 (13%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + N L + + + A F+ +AV+R+ T+GR+ V A+CLYL CR + P +L+
Sbjct: 93 IHHLGNQLQLNQ--HCLDTAFNFFKMAVSRHLTRGRKMAHVIAACLYLVCRTEGTPHMLL 150
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG-GNKKVCD 119
D S+ L +NVY LG +L L + L I + +DP +++ +F L G N +V
Sbjct: 151 DLSDLLQVNVYVLGKTFLLLARELCINAPA-----IDPCLYIPRFAHLLEFGEKNHEVSM 205
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA +L MKRDW+ TGR+PSGLCGAAL V+A H + + +++ +V +CE+TL KRL
Sbjct: 206 TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLT 265
Query: 180 EFENTDSGSLTIEDFMA-------------------RKKELHEGVAANLPNNGPKVSGMN 220
EFE+T + LTI++FM R K+L + ++ L ++S
Sbjct: 266 EFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISSYQ 325
Query: 221 EVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKASAEE-NSS 279
+ + + +P A G S ++ T E A + + ++A+A N
Sbjct: 326 DAIEIELENSRPKAKGGLASLAKDGST-----EDTASSLCGEEDTEDEELEAAASHLNKD 380
Query: 280 FERESDSPFMSRVDKVQSPE----PESIGVPKNCTTQTASNEGEGDHTK----TPGVDAT 331
RE + SPE P ++G + TA++ G D + + D
Sbjct: 381 LYRELLGGAPGSSEAAGSPEWGGRPPALGSLLD-PLPTAASLGISDSIRECISSQSSDPK 439
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
+ DG + S IDD E+D Y+ NE E K +W N EYL EQ KEA A K
Sbjct: 440 DASGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEYLREQREKEARIAKEK--- 496
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
EL KE + K++ + + A TA EA +ML +K
Sbjct: 497 ---------------ELGIY---------KEHKPKKSCKRREPIQASTAREAIEKMLEQK 532
Query: 452 RLSSKINYDVLEKL 465
++SSKINY VL L
Sbjct: 533 KISSKINYSVLRGL 546
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2
Length = 492
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/469 (26%), Positives = 220/469 (46%), Gaps = 99/469 (21%)
Query: 17 VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAV 76
+ A R++ +A+ NF KGRR++ V ASCLY+ CR +LIDFS+ L INV++LG+
Sbjct: 103 IEAAVRYFTLAINNNFIKGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGST 162
Query: 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-NKKVCDTARDILASMKRDWITT 135
+L+LC+VL L +DPS+++ +F L G +V + A ++A M RDW+
Sbjct: 163 FLKLCRVLRPN-----LPLLDPSLYISRFASLLEFGPETHRVANDAIRLVARMNRDWMQI 217
Query: 136 GRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195
GR+P+G+CGA L ++A + + S ++V +V + + T+ KRL EF+ T+SG L+I DF
Sbjct: 218 GRRPAGICGACLLIAARMNNFRRSVREVVHVVKVADITIQKRLDEFKLTESGDLSIADF- 276
Query: 196 ARKKELHEGVAANLPNNGPKVSGMNEVLCKHKDTGKPFACGLCRSCYEEFMTISEGLEGG 255
R+ + E G
Sbjct: 277 -------------------------------------------RNIWLE---------GQ 284
Query: 256 ADPPAFQVAERERMVKASAEENSSFERESDSPF---------------MSRVDKVQSPE- 299
+DPP+F ++ + A N +E SP +S+ KV+S E
Sbjct: 285 SDPPSFTKNQKFQQYGAQKVSNIDHTQEYMSPIKRTPDFDGNEVKSEELSQTVKVESQET 344
Query: 300 PESIGVPKNCTTQTASNEGEGDHTKTPGVDATTEASDGSDNFSDIDDFEVDGYLHNEEEK 359
P + + + + +GD + + + S+ D+DD E++ L +++E
Sbjct: 345 PVHLKADEREIRKEVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEI 404
Query: 360 HYKKIIWEEMNREYLEEQAAKEAAAAAAKAALEASYKNCPEGLQAAQELAAAAAAAVAKS 419
K +W E+N++YL E+ AK L+ ++L + +
Sbjct: 405 LTKTQVWMELNKDYLAEEEAK--------------------NLKLQEDL----KKGIVRQ 440
Query: 420 RKEKQQKRAAEAKNSGPAQTALEATRRMLTKKRLSSKINYDVLEKLFDD 468
+++++ R ++ + G A TA E+ + M+ ++ S KINY+ L+ LFD+
Sbjct: 441 PRKRRRYRPRDSTSDGIADTAAESAKEMMQQRAFSKKINYEALDMLFDE 489
>sp|P46070|TF3B_KLULA Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
Length = 556
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 7/205 (3%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++ + ALNI E + A ++Y +A++ NF +GR+++ V A+CLY+ACR++ +LI
Sbjct: 98 LKAVSYALNIPEY--VTDAAFQWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLI 155
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK-KVCD 119
DFS+ L ++VY +GA +L+L + L I L DPS+F+ F ++L G K KV
Sbjct: 156 DFSSRLQVSVYSIGATFLKLAKKLQIVK----LPLADPSLFIQHFAEKLELGDKKIKVIR 211
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + +M RDW+ GR+P+G+ GA L ++ + L+ + S+IV I H+ E TL +RL
Sbjct: 212 DAVKLAQTMSRDWMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLN 271
Query: 180 EFENTDSGSLTIEDFMARKKELHEG 204
EF+NT S L++++F + E++EG
Sbjct: 272 EFKNTTSAKLSVKEFRDDETEVNEG 296
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAKAAL 391
++ SD +N D+DD E+D +L +EE K+ IW ++N +YL EQ +K A A+
Sbjct: 423 SKVSDHPENLDDVDDAELDSHLLDEEASKLKERIWIDINGDYLIEQESKRLKQEADLASG 482
Query: 392 EASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKRAAEAKNSGPAQTALEATRRMLTKK 451
S + ++ + ++A++ K + + + A + +L K
Sbjct: 483 NTSLRKK----RSKRTNRNQSSASIVKVQVDGLPLDVSVDDADAVDVVAAGGVKNLLQKT 538
Query: 452 RLSSKINYDVLEKLF 466
S KINYD + LF
Sbjct: 539 TFSKKINYDAINGLF 553
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1
SV=1
Length = 596
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 129/207 (62%), Gaps = 9/207 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R + AL+I E I A ++Y +A+A NF +GRR++ V ASCLY+ACR++ +LI
Sbjct: 87 LRAVSYALHIPEY--ITDAAFQWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLI 144
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L ++VY +GA +L++ + L+I + L DPS+F+ F ++L L KV
Sbjct: 145 DFSSRLQVSVYSIGATFLKMVKKLHITE----LPLADPSLFIQHFAEKLDLADKKIKVVK 200
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M +DW+ GR+P+G+ GA + ++ + L+ + ++IV + H+ E TL +RL
Sbjct: 201 DAVKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLN 260
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVA 206
EF+NT + L+++ F R+ ++ +G A
Sbjct: 261 EFKNTKAAKLSVQKF--RENDVEDGEA 285
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 332 TEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAK----EAAAAAA 387
++ SD DN D+DD E++ +L NEE K+ IW +N ++L EQ +K EA A
Sbjct: 453 SKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLKQEADIATG 512
Query: 388 KAALEASYKNCPEGL---QAAQELAAAAAAAVAKSRKEKQQKRAA--EAKNSGPAQTALE 442
+++ + + + AAAA + ++K AA A+ SG TA +
Sbjct: 513 NTSVKKKRTRRRNNTRSDEPTKTVDAAAAIGLMSDLQDKSGLHAALKAAEESGDFTTA-D 571
Query: 443 ATRRMLTKKRLSSKINYDVLEKLF 466
+ + ML K S KINYD ++ LF
Sbjct: 572 SVKNMLQKASFSKKINYDAIDGLF 595
>sp|P43072|TF3B_CANAL Transcription factor IIIB 70 kDa subunit OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=TDS4 PE=3 SV=1
Length = 553
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 226/508 (44%), Gaps = 97/508 (19%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
++++ AL I D I A ++ +A+ NF +GRR+ V A+CLY+ACR++ +LI
Sbjct: 95 IKRIAAALKI--PDYIAEAAGEWFRLALTLNFVQGRRSNNVLATCLYVACRKERTHHMLI 152
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCD 119
DFS+ L I+VY LGA +L++ + L+I L DPS+F+ F ++L KV
Sbjct: 153 DFSSRLQISVYSLGATFLKMVKALHITS----LPLADPSLFIQHFVEKLDFKDKATKVAK 208
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A + M DWI GR+P+G+ GA + ++A + + S ++IV + H+ E TL +RL
Sbjct: 209 DAVKLAHRMAADWIHEGRRPAGIAGACVLLAARMNNFRRSHAEIVAVSHVGEETLQRRLN 268
Query: 180 EFENTDSGSLTIEDFMARKKELHEGVAANLPNNGPKVSGMN---------------EVLC 224
EF+ T +G+L+++ F +E+ E + ++ P + K M E L
Sbjct: 269 EFKKTKAGTLSVKSF----REV-ENLESSNPPSFEKNRAMELKISKKLQQQQTDNFEDLS 323
Query: 225 KHKDTGKPFACG-----------LCRSCYEEFMTISEGLEGGADPPAFQVAERERMVKAS 273
K + K G L + + +E L D R +K S
Sbjct: 324 KMTEEEKQSVFGKLSKEEAQKQLLMNTILSDITITTENLNDQMD--------RILKMKKS 375
Query: 274 AEENSSFERESDSPFMSRVDKVQSPEPE---SIGVPKNCTTQTASNEGEGDHTKTPGVDA 330
+ ENS ++ +P+ + +P +I PKN P D
Sbjct: 376 SLENSLYK----TPYELALANGSEQDPSKIWNINKPKNLVAN------------LPKTDD 419
Query: 331 TTE--ASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAAAAAAK 388
+ +S+ N D D+ ++ L EEE K+ IW +N +YL EQ K
Sbjct: 420 ILQNVSSEVELNSDDDDEIVLESKL-TEEEVAIKERIWTGLNHDYLVEQEKKRLK----- 473
Query: 389 AALEASYKNCPEGLQAAQELAAAAAAAVAKSRKEKQQKR-AAEAKN---------SGPAQ 438
Q A EL + + + +R+++ + AE + G +
Sbjct: 474 --------------QEADELTGNTSKSSSGNRRKRNKSSLPAELRKELGDIDLDEDGTPR 519
Query: 439 TALEATRRMLTKKRLSSKINYDVLEKLF 466
+A ++ + ++K +S KINYD L+ L
Sbjct: 520 SAADSAKMYISKTSVSKKINYDSLKGLL 547
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL R +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYRRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILDEAYKRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + S+ + E+G Y
Sbjct: 133 AARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARNLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYKRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 11/165 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
A R Y AV + +GR E V A+C+Y ACR P L + ++ ++ E+G +
Sbjct: 133 AARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEIGRSFR- 191
Query: 80 LCQVLYIADESNVLKQ---VDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG 136
+IA N+ + V P+ +++KF D L G ++KV A +IL + +T+G
Sbjct: 192 -----FIARHLNLTPKKLFVKPTDYVNKFADEL--GLSEKVRRRAIEILEEAYQRGLTSG 244
Query: 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ P+GL AALY+++L G K ++ ++ ++ + E T+ R E
Sbjct: 245 KSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKEL 289
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + +S + A Y AV +N +GR E V A+ LY ACRQ P L +
Sbjct: 147 RMASALGLPKS--VRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 204
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ Y ++ E+G Y + + L + L P+ ++ +F L G + +V A
Sbjct: 205 ATYSRVDRKEIGRTYRFITRELGLK-----LMPTSPADYIPRFCAAL--GLSGEVQKKAI 257
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+I+ + +T+GR P+G+ AALYV+++ G + ++ ++ ++ + E T+ R E
Sbjct: 258 EIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKEL 316
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G E+ A Y A++ + GR E V + LY + RQ
Sbjct: 137 RNLKQALGEIERMASALGLPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQL 196
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
S P + + +N I+ E Y + + L + + DP+ ++ +F L LP
Sbjct: 197 STPRSIDEVANVSRIDEMEFKRTYRYIVRELSLE-----VAPADPAQYVPRFASDLDLP- 250
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
+V +R+++++ + D +T+G+ P GL AA+Y S+L K ++S++ ++ + E
Sbjct: 251 --DEVERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEV 308
Query: 173 TLMKRLIEF 181
T+ R E
Sbjct: 309 TIRNRYQEL 317
>sp|P50387|TF2B_SULSH Transcription initiation factor IIB OS=Sulfolobus shibatae GN=tfb
PE=3 SV=1
Length = 309
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 127 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + +V T
Sbjct: 185 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGRVMKT 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 238 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 297
Query: 181 F 181
Sbjct: 298 L 298
>sp|P58111|TF2B1_SULSO Transcription initiation factor IIB 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=tfbA
PE=3 SV=1
Length = 309
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 9/181 (4%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++ N LN+ +S + A Y AV + +GR E V A+ +Y ACR+ L
Sbjct: 127 LERIGNLLNLPKS--VKDEAALIYRKAVEKGLVRGRSIESVVAAAIYAACRRMKLARTLD 184
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120
+ + Y N E+ Y L + L ++ + DP ++ + + L G + V T
Sbjct: 185 EIAQYTKANRKEVARCYRLLLRELDVS-----VPVSDPKDYVTRIANLL--GLSGAVMKT 237
Query: 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
A +I+ K +T G+ P+GL AA+Y+++L H + ++ +I ++ + E T+ R E
Sbjct: 238 AAEIIDKAKGSGLTAGKDPAGLAAAAIYIASLLHDERRTQKEIAQVAGVTEVTVRNRYKE 297
Query: 181 F 181
Sbjct: 298 L 298
>sp|Q9Y942|TF2B_AERPE Transcription initiation factor IIB OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=tfb PE=3 SV=2
Length = 322
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A +G + +V A + Y A+ + T+GR E + A+ LY A R P L D +
Sbjct: 131 ASRMGMPEIVVEDASKIYREAMEKGLTRGRSIESIVAASLYAASRIHGLPHSLTDIIKAM 190
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILA 126
NV + L + D + + P F++ L G + V A I+
Sbjct: 191 KGNVDAETRRDVARSYRLLVRDLNIKIPVRKPENFVYTIISAL--GLPEHVAIEAIKIID 248
Query: 127 SMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
++ +T G+ P GL GAA+Y++AL HG++ ++ +I +V + E T+ R E
Sbjct: 249 LSRKKGLTAGKDPGGLAGAAVYLAALKHGIRKTQKEIAHVVGVTEVTIRNRYKEI 303
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ D++ A Y AV +N +GR E V A LY ACR + P L + ++
Sbjct: 135 ASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVT 194
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLLPGGNKKVCDTARD 123
+ E+G Y + + L + N++ PS ++ +F +L + + + A +
Sbjct: 195 RVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLKLSMDTR--NKALE 244
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
IL S + +T+G+ P+G+ AA+Y+++L G + ++ + ++ + E T+ R E
Sbjct: 245 ILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYKEL-- 302
Query: 184 TDSGSLTIE 192
T+ L +E
Sbjct: 303 TEKLQLNVE 311
>sp|Q9HHK5|TF2B3_HALSA Transcription initiation factor IIB 3 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbC PE=3
SV=1
Length = 317
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V +CLY ACRQ+ P L +
Sbjct: 140 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATACLYAACRQEGIPRTLEEV 197
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ I+ E+G Y + Q L + ++ DP +L +F L +++V AR
Sbjct: 198 TEVARIDQKEIGRTYRYVAQELSLE-----IQPTDPKEYLPRFASDLEL--SEEVIAKAR 250
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + +G+ PSG AA+Y ++L K ++ ++ + ++ E T+ R E
Sbjct: 251 EIIDTSAEQGLLSGKSPSGFAAAAIYAASLLCNEKKTQREVANVANVTEVTIRNRYQE 308
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAE 190
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L I L P ++ +F L G + +V A +I
Sbjct: 191 VSRVSKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASEL--GLSGEVQSKAIEI 243
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ + +T+GR P+G+ AALY++++ G ++ D+ ++ + E T+ R E E
Sbjct: 244 IEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTEQ 303
Query: 184 TDSG 187
D G
Sbjct: 304 LDLG 307
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y + KGR E + A+CL++ACR + P L + S Y E+ + + +
Sbjct: 174 VYKQVLKSGLVKGRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIAR 233
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L DP ++ K ++L LPG + A +L K +T G+ P+G
Sbjct: 234 ELRIR-----LPLSDPRQYVPKIVEQLKLPGD---IAKEAIRVLEEAKDKGLTAGKDPAG 285
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
L AA+Y+++L G ++ +I + + E T+ R E
Sbjct: 286 LAAAAVYIASLLKGEVRTQKEIAQAAQVTEVTVRNRYKEL 325
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ P L + ++
Sbjct: 132 RDSSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIAD 191
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
++ E+G Y L + L+I L P ++ +F L G V A +I
Sbjct: 192 VSRVSKKEVGRTYRFLTRELHIR-----LPPTSPIDYVPRFASELNLSG--VVQSKAIEI 244
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF-EN 183
+ + +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E E
Sbjct: 245 INQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTEQ 304
Query: 184 TDSG 187
D G
Sbjct: 305 LDMG 308
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 7 ALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66
A N+ +++ A Y AV +N +GR E V A LY ACR + P L + ++
Sbjct: 135 AFNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVT 194
Query: 67 NINVYELGAVYLQLCQVLYIADESNVLKQVDPSI---FLHKFTDRLLPGGNKKVCDTARD 123
+ E+G Y + + L + N++ PS ++ +F +L + + + A +
Sbjct: 195 RVKKKEIGRTYRIMSRYLKL----NIM----PSKAEDYISRFCSKLKLSMDTR--NKALE 244
Query: 124 ILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183
IL + +T+G+ P+G+ AA+Y+++L G + ++ + ++ + E T+ R E
Sbjct: 245 ILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYKEL-- 302
Query: 184 TDSGSLTIE 192
T+ L +E
Sbjct: 303 TEKLKLNVE 311
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 5 KNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSN 64
+++ +G + A Y AV +GR E V A+ LY ACR+ + P L + +
Sbjct: 131 RDSSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAE 190
Query: 65 YLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDI 124
+ E+G Y L + L I L P ++ +F L G + A +I
Sbjct: 191 VSRVTKKEVGRTYRFLTRELNIK-----LPPTSPVDYVPRFASELGLSGEAQ--SRAIEI 243
Query: 125 LASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ +T+GR P+G+ AALY++++ G + ++ D+ I + E T+ R E
Sbjct: 244 IEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKEL 300
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M N LN+ +I A Y AV + +GR E V A+ +Y ACR +P L +
Sbjct: 128 RMANLLNL--PKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEI 185
Query: 63 SNYLNINVYELGAVYLQLCQVLY----IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118
+ L +N E+ Y + + L IAD + + ++ ++ L G+ +
Sbjct: 186 AKKLEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLR---------GD--II 234
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178
+ A I+ +K IT G+ P+G+ A +Y++ + G + ++ +I + + E T+ R
Sbjct: 235 EYAMKIMEKIKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRY 294
Query: 179 IEF 181
E
Sbjct: 295 KEI 297
>sp|B1YCX0|TF2B_PYRNV Transcription initiation factor IIB OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1
Length = 333
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G + A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGIPRPCIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKA 216
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP++++ + ++L G +V TA DIL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPTLYISRIAEQLKLSG--EVVKTAIDILQK 268
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>sp|Q58192|TF2B_METJA Transcription initiation factor IIB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=tfb PE=3 SV=1
Length = 673
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ +Y ACR+ P L + + ++ E+G Y
Sbjct: 512 IYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYR---- 567
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
++A E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 568 --FLARELNIKLTPTNPIDYVPRFASELGLPG---EVESKAIQILQQAAEKGLTSGRGPT 622
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ ++ + E T+ R E
Sbjct: 623 GVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKEL 663
>sp|Q8TX21|TF2B_METKA Transcription initiation factor IIB OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=tfb
PE=3 SV=1
Length = 307
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ + + L + ES + +A Y A +GR E V + ++ AC++ P
Sbjct: 125 LENLASKLQLPES--VRELAASIYRKAYKEGIVRGRGIESVLGAAVFAACKEARVPRTAR 182
Query: 61 DFSNYLNI-NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 119
+ + L + + E+ Y L + L + K +PS L +F +L G ++ V
Sbjct: 183 EIAEALGVSDENEILRAYRVLQRRLNLKQ-----KPTEPSDHLPRFASKL--GVSENVQA 235
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
A++I+ K IT G+ P+G+ AALY++++ G + ++ +I ++ + E T+ R
Sbjct: 236 KAQEIIEKAKEKGITVGKGPAGVAAAALYIASILEGERRTQKEIAEVARVTEVTIRNRYK 295
Query: 180 EF 181
E
Sbjct: 296 EI 297
>sp|Q8ZWS3|TF2B_PYRAE Transcription initiation factor IIB OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=tfb PE=3 SV=1
Length = 333
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+ ++++A+ I + A Y A+ + +GR E + A+ LY+ACR P L
Sbjct: 151 LERLRSAMGIPRP--CIEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLD 208
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCD 119
+ Y + E+ Y L + E NV + DP +++ + ++L G +V
Sbjct: 209 ELVRYTKASRREVARCYRLLLR------ELNVKVPISDPILYISRIAEQLKLSG--EVVK 260
Query: 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179
TA DIL K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R
Sbjct: 261 TAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYK 320
Query: 180 EF 181
E
Sbjct: 321 EL 322
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEGSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLTPTNPIDYVPRFASELKLPG---EVESKAISILQKANEKGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A1RV37|TF2B_PYRIL Transcription initiation factor IIB OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1
Length = 333
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMKMPRPLDELVRYTKA 216
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G +V TA +IL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKTAIEILQK 268
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E T
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTVRNRYKELAKT 325
>sp|Q9HSF7|TF2B7_HALSA Transcription initiation factor IIB 7 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbG PE=3
SV=1
Length = 323
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + S + VA Y A+ + +GR E V S LY ACR++ P L +
Sbjct: 146 RMASALGVPRS--VREVASVIYRRALKEDLIRGRSIEGVATSALYAACRKEGIPRSLEEI 203
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
S + E+G Y + Q L + +K VDP ++ +F L ++V A
Sbjct: 204 SEVSRVERKEIGRTYRYISQELGLE-----MKPVDPKKYVPRFCSELEL--TEEVQSKAN 256
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180
+I+ + + + +G+ P+G AA+Y ++L K ++ ++ + + E T+ R E
Sbjct: 257 EIIETTAEEGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQE 314
>sp|A4WMA6|TF2B_PYRAR Transcription initiation factor IIB OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1
Length = 333
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 9/174 (5%)
Query: 9 NIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI 68
++G V A Y A+ + +GR E + A+ LY+ACR P L + Y
Sbjct: 157 SMGVPRPCVEQALEIYRQALEKELVRGRSVEAMAAAALYMACRMMRMPRPLDELVRYTKA 216
Query: 69 NVYELGAVYLQLCQVLYIADESNVLKQV-DPSIFLHKFTDRLLPGGNKKVCDTARDILAS 127
+ E+ Y L + E NV + DP +++ + ++L G +V A DIL
Sbjct: 217 SRREVARCYRLLLR------ELNVKVPISDPVLYISRIAEQLKLSG--EVVKAAIDILQR 268
Query: 128 MKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
K+ IT G+ P+GL AA+Y+++L HG ++ D + E T+ R E
Sbjct: 269 AKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTVRNRYKEL 322
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTYR---- 233
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+GR P+
Sbjct: 234 --FISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGERGLTSGRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y + +
Sbjct: 173 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEMSRVDRKEIGRTYRFISR 232
Query: 83 VLYIADESNVLKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPSG 141
L I L P ++ +F L LPG +V A IL +T+GR P+G
Sbjct: 233 ELKIR-----LAPTSPIDYVPRFASELKLPG---EVESKAISILQKAGDKGLTSGRGPTG 284
Query: 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+ AA+Y++++ HG + ++ ++ + + E T+ R E
Sbjct: 285 VAAAAIYIASVLHGTRKTQREVADVAGVTEVTIRNRYKEL 324
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 19 VAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78
VA Y AV + +GR E + ++ LY ACR + P L + ++ ++ E+G Y
Sbjct: 141 VAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASVSKVSKKEIGRSYR 200
Query: 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRK 138
+ + L + L+ P ++ +F D L G + + A++IL + IT+G+
Sbjct: 201 FMARGLGLN-----LRPTSPIEYVDRFGDAL--GVSARTKKRAKEILNEAIKRGITSGKG 253
Query: 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
P+GL AALY++AL G K ++ ++ ++ H+ E T+ R E
Sbjct: 254 PTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKEL 296
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 155 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 213 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLTLKG--EVQSRA 264
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 265 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 324
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL G + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 155 RMASAL--GLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 212
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
+ ++ E+G Y + + L + L P ++ +F L G +V A
Sbjct: 213 AEVSRVSRKEIGRTYRFISRELGLK-----LLPTSPIDYVPRFCSGLTLKG--EVQSRAV 265
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 266 EILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 324
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + + + A Y AV +N +GR E V A+ LY ACRQ S P L +
Sbjct: 158 RMASALGLPRN--VRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNV-LKQVDPSIFLHKFTDRLLPGGNKKVCDTA 121
+ ++ E+G Y +I+ E + L P ++ +F L G +V A
Sbjct: 216 AEVSRVSRKEIGRTY------RFISRELGLKLLPTSPIDYVPRFCSGLNLKG--EVQSRA 267
Query: 122 RDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
+IL +T+GR P+G+ AA+Y+S++ G + ++ ++ ++ + E T+ R E
Sbjct: 268 VEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRYKEL 327
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 23 FYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQ 82
Y AV + +GR E V A+ LY ACR+ P L + + ++ E+G Y
Sbjct: 178 LYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAEVSRVDRKEIGRTY----- 232
Query: 83 VLYIADESNV-LKQVDPSIFLHKFTDRL-LPGGNKKVCDTARDILASMKRDWITTGRKPS 140
+I+ E N+ L +P ++ +F L LPG +V A IL +T+ R P+
Sbjct: 233 -RFISRELNIRLAPTNPVDYVPRFASELKLPG---EVESKAISILQKAGEKGLTSSRGPT 288
Query: 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
G+ AA+Y++++ G + ++ ++ + + E T+ R E
Sbjct: 289 GVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
>sp|Q9HJM2|TF2B2_THEAC Transcription initiation factor IIB 2 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbB PE=3 SV=1
Length = 307
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +I A Y AV +N +GR E + + +Y ACR+ + P L + S +N
Sbjct: 133 LGIPKDIKETAALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEISKASEVN 192
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + LK P ++ +F ++L +K+ + DI+
Sbjct: 193 KKKIGKAYRHLAKELDLN-----LKPTTPFSYISQFCNKL--DLDKQAIVISEDIVRQAM 245
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 246 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 297
>sp|Q9HSB3|TF2B6_HALSA Transcription initiation factor IIB 6 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbF PE=3
SV=1
Length = 319
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 2 RQMKNALN--------IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
R +K AL +G D + A Y A+ + GR E V SC+Y A RQ
Sbjct: 130 RNLKQALGEIDRMASALGLPDNVRETASVIYRRALEDDLLPGRSIEGVATSCVYAAARQA 189
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG 113
P L + ++ + E+ Y + + L + + DP ++ +F L G
Sbjct: 190 GVPRSLDEIADVSRVEKAEIARTYRYVVRELGLE-----VAPADPESYVPRFASDL--GL 242
Query: 114 NKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEAT 173
+ + AR++L + K + +G+ P GL AA+Y +AL K +++ + ++ I E T
Sbjct: 243 SDEASHRARELLKTAKDKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAKVSEVADISEVT 302
Query: 174 LMKR---LIEFENT 184
+ R L+E E+T
Sbjct: 303 IRNRYHELLEAEDT 316
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 3 QMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDF 62
+M +AL + E+ + A Y A+ + GR E V S LY + R P L +
Sbjct: 153 RMASALGLPEN--VRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDEL 210
Query: 63 SNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTAR 122
++ EL Y + + L + +K DP ++ +F L G + + AR
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLE-----IKPADPEQYVPRFASEL--GLSDEAERQAR 263
Query: 123 DILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182
+L K I +G+ P GL AA+Y +AL K ++S++ + I E T+ R E
Sbjct: 264 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELL 323
Query: 183 NTDSGSL 189
G+L
Sbjct: 324 EVQDGTL 330
>sp|Q979P7|TF2B2_THEVO Transcription initiation factor IIB 2 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbB PE=3 SV=1
Length = 313
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 7/172 (4%)
Query: 10 IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN 69
+G +I + Y AV +N +GR E + + +Y ACR+ + P L + + +N
Sbjct: 139 LGIPKDIKETSALIYRKAVEKNLIRGRSIESIVCASIYAACRKVNIPRTLDEIAKASEVN 198
Query: 70 VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK 129
++G Y L + L + L+ P ++ +F ++L +K+ + DI+
Sbjct: 199 KKKIGKAYRHLAKELDLN-----LRPTTPFSYIAQFCNKL--DLDKQAIVISEDIVRQAM 251
Query: 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181
I++G+ P+G+ AA+Y++++ G ++ +I +I + E T+ R E
Sbjct: 252 SMGISSGKGPTGIAAAAIYIASVKVGKPRTQKEIARISGVTEVTIRNRYKEI 303
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2
SV=1
Length = 316
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 34 KGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVL 93
KGR + + ++CLY+ACRQ+ P + I+ E+G + + + L E+NV
Sbjct: 152 KGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL----ETNV- 206
Query: 94 KQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 153
+ F+ +F L G K+V A I + GR P + AA+Y+++
Sbjct: 207 DLITTGDFMSRFCSNL--GLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQA 264
Query: 154 HGLKFSKSDIVKIVHICEATLMK--RLI 179
K ++ +I I + + T+ + RLI
Sbjct: 265 SAEKRTQKEIGDIAGVADVTIRQSYRLI 292
>sp|Q9HHH8|TF2B5_HALSA Transcription initiation factor IIB 5 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbE PE=3
SV=1
Length = 307
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 13/162 (8%)
Query: 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLI 60
+R++ +AL G +D + A + + A KGR E + A+ ++ ACR + +L+
Sbjct: 131 IRRIASAL--GLADSVRDQACQLFRTAQNERLLKGRSIEAMAAASVFGACRCNGESWLID 188
Query: 61 DFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLP--GGNKKVC 118
D + + + Y L + L + P + L +F RL G V
Sbjct: 189 DVAPMAQVGQNRVENAYTVLNEELGLPT---------PPVSLDQFVPRLASDLGCTDVVR 239
Query: 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 160
A +++ ITTG PSG A LY++A H ++
Sbjct: 240 RRAEELVVQAVDAGITTGVHPSGFAAACLYMAACVHDAPLTQ 281
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 17/182 (9%)
Query: 2 RQMKNALN-IGESDEIVHV-------AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK 53
RQM A++ I E E +H+ A R + + +G+ E A+CLY+ACR+
Sbjct: 102 RQMTAAMSLIREMSERIHLPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKD 161
Query: 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-LPG 112
P + ++ E+G + +++ + E+N L+Q+ + F+ +F L LP
Sbjct: 162 GVPRTFKEICAVSRVSKKEIGRCF----KIIVRSLETN-LEQITSADFMSRFCGNLSLP- 215
Query: 113 GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEA 172
N R ++ D + GR P + AA+Y+++ K S +I + E
Sbjct: 216 -NSIQAAATRIAKCAVDMDLV-AGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEI 273
Query: 173 TL 174
T+
Sbjct: 274 TV 275
>sp|A8KBY2|BRF2_DANRE Transcription factor IIIB 50 kDa subunit OS=Danio rerio GN=brf2
PE=2 SV=1
Length = 423
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 45 CLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 104
C++ CRQ S P + L+ + Y++G +Y +L + L + + ++ S F +
Sbjct: 119 CMFHICRQNSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES-FCYD 177
Query: 105 F------TDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVS 150
F + + +++ D +L WI TGR+P L AA+YV+
Sbjct: 178 FKLAPDEVEEVFSVAQQRLVDQTSALLELAADTWILTGRRPFPLFLAAVYVA 229
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SUA7 PE=3 SV=1
Length = 357
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 11/164 (6%)
Query: 20 AKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79
AK Y + KG+ E + AS + + CR+ + + N+ E+G +
Sbjct: 154 AKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRKKEIGKTFTI 213
Query: 80 LCQVLY--------IADESNVLK-QVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKR 130
+ +L D SN+ Q F+ +F L G + +V + A I K
Sbjct: 214 IKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHL--GLSVQVANAAEYIAKHSKD 271
Query: 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATL 174
+ GR P + AA+Y++ L L S + I + + + E T+
Sbjct: 272 VNVLAGRSPITIAAAAIYMATLLFKLNISPTRISQTLQVTEGTV 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,443,116
Number of Sequences: 539616
Number of extensions: 7459838
Number of successful extensions: 33236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 324
Number of HSP's that attempted gapping in prelim test: 31350
Number of HSP's gapped (non-prelim): 1488
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)