Query 011262
Match_columns 490
No_of_seqs 243 out of 1048
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 1.6E-42 5.4E-47 356.7 9.7 189 1-194 133-328 (345)
2 1ais_B TFB TFIIB, protein (tra 100.0 4.7E-39 1.6E-43 305.7 22.3 176 1-183 16-191 (200)
3 3k7a_M Transcription initiatio 100.0 5.1E-40 1.7E-44 338.1 3.6 186 1-196 133-330 (345)
4 1c9b_A General transcription f 100.0 1.6E-36 5.4E-41 290.0 18.2 185 1-195 12-196 (207)
5 1zp2_A RNA polymerase II holoe 99.9 2.9E-23 1E-27 202.0 17.4 174 1-184 35-217 (235)
6 2i53_A Cyclin K; cell cycle, t 99.8 6E-20 2.1E-24 180.4 18.3 175 1-184 48-248 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.8 3.4E-19 1.2E-23 175.2 20.3 175 1-184 38-237 (257)
8 2b9r_A Human cyclin B1; cell c 99.8 6.7E-19 2.3E-23 174.7 17.0 173 1-182 45-220 (269)
9 3rgf_B Cyclin-C; protein kinas 99.8 1.5E-18 5.3E-23 173.7 19.0 173 1-184 50-239 (285)
10 2cch_B Cyclin A2, cyclin-A; co 99.8 3.7E-18 1.2E-22 168.5 16.3 175 1-183 46-224 (260)
11 2pk2_A Cyclin-T1, protein TAT; 99.8 2.7E-18 9.3E-23 177.3 12.0 176 1-185 45-245 (358)
12 2w96_A G1/S-specific cyclin-D1 99.8 1.7E-17 5.9E-22 164.6 17.3 173 2-183 65-253 (271)
13 1jkw_A Cyclin H; cell cycle, c 99.7 1.4E-16 4.9E-21 162.2 18.3 152 1-159 64-229 (323)
14 1ngm_B Transcription factor II 99.7 2E-18 6.8E-23 137.0 2.5 53 331-383 18-70 (72)
15 1g3n_C V-cyclin; cyclin-depend 99.7 3.9E-16 1.3E-20 153.7 17.0 175 2-183 59-244 (257)
16 2f2c_A Cyclin homolog, V-cycli 99.7 7.9E-16 2.7E-20 151.2 18.7 175 2-183 60-244 (254)
17 1w98_B Cyclin E, G1/S-specific 99.6 6.4E-15 2.2E-19 147.2 17.7 168 1-182 57-237 (283)
18 3g33_B CCND3 protein; Ser/Thr 99.6 6.7E-14 2.3E-18 141.5 19.1 177 1-184 78-264 (306)
19 1ais_B TFB TFIIB, protein (tra 99.5 3E-13 1E-17 127.8 11.6 88 1-90 112-199 (200)
20 1c9b_A General transcription f 99.2 3.5E-11 1.2E-15 114.3 10.8 87 1-89 106-192 (207)
21 4bbr_M Transcription initiatio 99.0 6.4E-11 2.2E-15 121.6 0.0 98 1-109 239-336 (345)
22 1f5q_B Gamma herpesvirus cycli 98.9 4.1E-08 1.4E-12 96.5 17.7 170 2-182 57-237 (252)
23 3k7a_M Transcription initiatio 98.7 1.5E-09 5.2E-14 111.3 0.0 83 1-85 239-321 (345)
24 1zp2_A RNA polymerase II holoe 97.6 0.00027 9.1E-09 68.0 10.3 67 99-167 32-99 (235)
25 2cch_B Cyclin A2, cyclin-A; co 97.0 0.0012 4.2E-08 64.3 7.2 83 2-86 144-228 (260)
26 2b9r_A Human cyclin B1; cell c 96.9 0.00072 2.5E-08 66.4 4.9 82 2-85 143-224 (269)
27 2ivx_A Cyclin-T2; transcriptio 96.9 0.0032 1.1E-07 61.1 9.2 68 99-168 35-102 (257)
28 2i53_A Cyclin K; cell cycle, t 96.8 0.0033 1.1E-07 60.9 9.2 68 99-168 45-112 (258)
29 3rgf_B Cyclin-C; protein kinas 96.7 0.0065 2.2E-07 60.2 9.9 67 99-167 47-114 (285)
30 1jkw_A Cyclin H; cell cycle, c 96.6 0.0082 2.8E-07 60.6 10.6 71 100-170 62-132 (323)
31 2f2c_A Cyclin homolog, V-cycli 96.5 0.0099 3.4E-07 57.7 9.8 82 2-85 157-247 (254)
32 2pk2_A Cyclin-T1, protein TAT; 96.5 0.0046 1.6E-07 63.4 7.5 68 99-168 42-109 (358)
33 3m03_A ORC6, origin recognitio 96.1 0.033 1.1E-06 46.5 9.5 80 1-84 6-91 (95)
34 3h4c_A Transcription factor TF 96.1 0.056 1.9E-06 51.0 11.7 83 2-87 20-105 (260)
35 1g3n_C V-cyclin; cyclin-depend 95.9 0.011 3.8E-07 57.4 6.8 84 2-85 156-247 (257)
36 2w96_A G1/S-specific cyclin-D1 95.8 0.027 9.3E-07 55.1 9.2 96 100-197 62-163 (271)
37 1w98_B Cyclin E, G1/S-specific 95.0 0.079 2.7E-06 52.3 9.3 96 100-197 55-157 (283)
38 3g33_B CCND3 protein; Ser/Thr 95.0 0.073 2.5E-06 53.2 9.0 85 2-86 176-267 (306)
39 2qdj_A Retinoblastoma-associat 94.8 0.075 2.6E-06 53.3 8.7 70 2-74 7-81 (304)
40 4ell_A Retinoblastoma-associat 94.2 0.052 1.8E-06 56.6 5.9 65 1-66 286-352 (411)
41 2r7g_A PP110, retinoblastoma-a 93.7 0.08 2.7E-06 54.0 6.2 65 1-66 222-288 (347)
42 4elj_A Retinoblastoma-associat 92.8 0.15 5.1E-06 56.0 6.9 65 1-66 531-597 (656)
43 3m03_A ORC6, origin recognitio 91.1 0.98 3.3E-05 37.6 8.4 76 102-181 6-87 (95)
44 4elj_A Retinoblastoma-associat 89.2 1.3 4.6E-05 48.5 10.0 76 2-82 9-88 (656)
45 1tc3_C Protein (TC3 transposas 88.1 0.25 8.6E-06 34.0 2.3 29 156-184 20-48 (51)
46 3mn2_A Probable ARAC family tr 87.4 10 0.00035 30.8 12.7 101 41-197 4-105 (108)
47 2jt1_A PEFI protein; solution 86.9 0.39 1.3E-05 38.3 3.0 29 155-183 22-50 (77)
48 2qdj_A Retinoblastoma-associat 86.7 3 0.0001 41.6 10.0 94 102-204 6-103 (304)
49 3oou_A LIN2118 protein; protei 84.3 15 0.00052 29.8 13.0 40 40-80 6-45 (108)
50 2x48_A CAG38821; archeal virus 81.2 0.52 1.8E-05 34.0 1.3 24 156-179 30-53 (55)
51 2lnb_A Z-DNA-binding protein 1 80.1 2.1 7.2E-05 34.2 4.5 46 44-89 22-67 (80)
52 1t6s_A Conserved hypothetical 77.4 7.1 0.00024 35.4 7.9 99 40-170 10-121 (162)
53 3i4p_A Transcriptional regulat 77.0 2.4 8.2E-05 37.7 4.6 35 151-185 11-45 (162)
54 2z99_A Putative uncharacterize 75.3 6.5 0.00022 37.4 7.3 42 39-84 17-58 (219)
55 2pmi_B PHO85 cyclin PHO80, ami 75.0 31 0.0011 34.2 12.3 100 2-109 82-185 (293)
56 3h4c_A Transcription factor TF 73.1 8.8 0.0003 36.2 7.3 78 102-182 19-99 (260)
57 1qbj_A Protein (double-strande 72.4 3 0.0001 33.3 3.6 29 155-183 25-53 (81)
58 1f5q_B Gamma herpesvirus cycli 72.4 5.7 0.0002 38.3 6.3 67 99-167 53-120 (252)
59 1jko_C HIN recombinase, DNA-in 72.0 0.62 2.1E-05 32.4 -0.5 25 158-182 22-46 (52)
60 2p5k_A Arginine repressor; DNA 71.8 5.5 0.00019 29.1 4.8 28 155-182 17-49 (64)
61 2e1c_A Putative HTH-type trans 71.3 3.7 0.00013 37.0 4.4 31 155-185 39-69 (171)
62 2r7g_A PP110, retinoblastoma-a 71.3 25 0.00086 35.6 10.9 127 38-165 104-286 (347)
63 2cyy_A Putative HTH-type trans 71.0 4 0.00014 35.6 4.4 30 155-184 19-48 (151)
64 2cg4_A Regulatory protein ASNC 70.7 4.1 0.00014 35.5 4.4 31 154-184 19-49 (152)
65 1qgp_A Protein (double strande 70.1 3.8 0.00013 32.3 3.6 28 156-183 30-57 (77)
66 2dbb_A Putative HTH-type trans 70.0 4.3 0.00015 35.3 4.4 31 154-184 20-50 (151)
67 2pn6_A ST1022, 150AA long hypo 70.0 4.7 0.00016 34.9 4.6 32 154-185 14-45 (150)
68 1i1g_A Transcriptional regulat 69.3 4.6 0.00016 34.5 4.4 31 154-184 15-45 (141)
69 3lwf_A LIN1550 protein, putati 69.2 6.2 0.00021 35.4 5.4 48 36-83 24-71 (159)
70 2p5v_A Transcriptional regulat 69.1 4.5 0.00015 35.7 4.4 30 155-184 22-51 (162)
71 2cfx_A HTH-type transcriptiona 69.0 4.6 0.00016 34.9 4.4 30 155-184 17-46 (144)
72 3lsg_A Two-component response 69.0 11 0.00038 30.3 6.5 40 41-80 4-43 (103)
73 2jpc_A SSRB; DNA binding prote 68.5 3.5 0.00012 29.9 3.0 27 156-182 12-38 (61)
74 1uxc_A FRUR (1-57), fructose r 68.4 3.6 0.00012 31.4 3.1 23 158-180 1-23 (65)
75 2htj_A P fimbrial regulatory p 68.0 5.8 0.0002 30.8 4.4 28 156-183 13-40 (81)
76 3gbg_A TCP pilus virulence reg 67.7 46 0.0016 31.2 11.6 36 157-197 233-269 (276)
77 2ia0_A Putative HTH-type trans 67.4 5 0.00017 36.1 4.4 31 154-184 28-58 (171)
78 2k9s_A Arabinose operon regula 67.2 9.7 0.00033 30.9 5.8 40 41-80 5-44 (107)
79 3e6c_C CPRK, cyclic nucleotide 66.5 15 0.00053 33.8 7.8 29 156-184 176-204 (250)
80 1fse_A GERE; helix-turn-helix 65.6 6.3 0.00022 29.5 4.0 27 156-182 25-51 (74)
81 1je8_A Nitrate/nitrite respons 65.5 6.1 0.00021 31.0 4.0 28 156-183 35-62 (82)
82 3lsg_A Two-component response 65.4 19 0.00065 28.8 7.2 49 145-198 7-55 (103)
83 2w25_A Probable transcriptiona 65.4 6.1 0.00021 34.3 4.4 30 155-184 19-48 (150)
84 2p7v_B Sigma-70, RNA polymeras 65.2 7.8 0.00027 28.9 4.5 27 156-182 24-50 (68)
85 1xn7_A Hypothetical protein YH 65.1 4.9 0.00017 31.9 3.4 28 155-182 14-41 (78)
86 2heo_A Z-DNA binding protein 1 65.1 6.1 0.00021 30.0 3.8 31 154-184 22-52 (67)
87 2w48_A Sorbitol operon regulat 65.0 5.8 0.0002 39.1 4.7 33 152-184 16-48 (315)
88 2o8x_A Probable RNA polymerase 64.2 7.5 0.00026 28.7 4.2 27 156-182 30-56 (70)
89 1x3u_A Transcriptional regulat 63.1 7.3 0.00025 29.6 4.0 28 156-183 30-57 (79)
90 1q1h_A TFE, transcription fact 62.8 7.4 0.00025 31.8 4.3 30 154-183 30-59 (110)
91 3oou_A LIN2118 protein; protei 62.7 20 0.00069 29.0 6.9 52 141-198 6-57 (108)
92 2k9s_A Arabinose operon regula 62.5 19 0.00066 29.0 6.8 52 142-198 5-56 (107)
93 3hug_A RNA polymerase sigma fa 62.3 7.8 0.00027 30.8 4.2 27 156-182 52-78 (92)
94 1ku3_A Sigma factor SIGA; heli 62.0 7.7 0.00026 29.4 3.9 26 156-181 29-54 (73)
95 3t8r_A Staphylococcus aureus C 62.0 7.5 0.00026 34.0 4.3 46 38-83 10-55 (143)
96 1l9z_H Sigma factor SIGA; heli 61.7 1.5E+02 0.0052 30.7 15.0 26 156-181 394-419 (438)
97 1oyi_A Double-stranded RNA-bin 61.7 5.6 0.00019 32.1 3.1 26 158-183 31-56 (82)
98 2y75_A HTH-type transcriptiona 61.6 14 0.00046 31.2 5.8 43 41-83 11-53 (129)
99 2d1h_A ST1889, 109AA long hypo 61.5 7 0.00024 31.1 3.8 30 155-184 34-63 (109)
100 3la7_A Global nitrogen regulat 61.1 17 0.00057 33.6 6.9 30 155-184 191-220 (243)
101 3b02_A Transcriptional regulat 60.9 13 0.00045 32.9 5.9 29 156-184 138-166 (195)
102 1tty_A Sigma-A, RNA polymerase 60.9 6.4 0.00022 31.2 3.4 27 156-182 37-63 (87)
103 3dv8_A Transcriptional regulat 60.4 15 0.00052 32.8 6.3 29 156-184 168-196 (220)
104 1j5y_A Transcriptional regulat 60.3 9 0.00031 34.8 4.8 29 155-183 34-62 (187)
105 1jhg_A Trp operon repressor; c 59.8 6.2 0.00021 33.0 3.2 29 156-184 57-85 (101)
106 2fmy_A COOA, carbon monoxide o 59.1 17 0.00058 32.7 6.4 29 156-184 166-194 (220)
107 2x4h_A Hypothetical protein SS 59.1 17 0.00058 30.6 6.1 31 154-184 28-58 (139)
108 3r0a_A Putative transcriptiona 58.6 10 0.00035 32.1 4.5 39 146-184 30-69 (123)
109 1ylf_A RRF2 family protein; st 58.3 10 0.00035 33.2 4.6 46 37-83 12-57 (149)
110 3mn2_A Probable ARAC family tr 58.3 30 0.001 27.9 7.2 51 142-198 4-54 (108)
111 3jth_A Transcription activator 58.2 9.3 0.00032 30.5 4.0 30 155-184 34-63 (98)
112 2gau_A Transcriptional regulat 58.1 21 0.0007 32.3 6.9 29 156-184 179-207 (232)
113 3c57_A Two component transcrip 57.5 7.6 0.00026 31.3 3.3 27 156-182 41-67 (95)
114 3cuo_A Uncharacterized HTH-typ 57.5 9.5 0.00033 30.0 3.9 31 154-184 35-65 (99)
115 2k02_A Ferrous iron transport 57.4 6.8 0.00023 31.9 3.0 29 156-184 15-43 (87)
116 2l8n_A Transcriptional repress 57.3 4.2 0.00014 31.2 1.6 23 157-179 9-31 (67)
117 3la7_A Global nitrogen regulat 56.0 20 0.00068 33.0 6.5 69 36-104 163-241 (243)
118 3k2z_A LEXA repressor; winged 55.9 11 0.00039 34.3 4.7 33 152-184 19-51 (196)
119 1zx4_A P1 PARB, plasmid partit 55.6 10 0.00034 35.3 4.2 28 154-181 21-48 (192)
120 2jt1_A PEFI protein; solution 55.4 16 0.00054 28.8 4.8 33 54-86 22-54 (77)
121 2rnj_A Response regulator prot 55.2 7.7 0.00026 30.8 3.0 28 156-183 43-70 (91)
122 3fx3_A Cyclic nucleotide-bindi 55.1 22 0.00076 32.2 6.6 30 155-184 176-205 (237)
123 4ham_A LMO2241 protein; struct 54.8 7.3 0.00025 33.5 2.9 29 154-182 34-63 (134)
124 2w7n_A TRFB transcriptional re 54.6 15 0.00052 30.6 4.7 31 152-182 29-59 (101)
125 3ryp_A Catabolite gene activat 54.5 15 0.00052 32.6 5.2 29 156-184 166-194 (210)
126 3ulq_B Transcriptional regulat 54.5 9.2 0.00032 30.8 3.3 27 156-182 43-69 (90)
127 3b73_A PHIH1 repressor-like pr 54.3 11 0.00038 31.8 4.0 31 153-184 24-56 (111)
128 3pqk_A Biofilm growth-associat 54.3 10 0.00035 30.5 3.7 29 156-184 35-63 (102)
129 2oz6_A Virulence factor regula 54.2 15 0.00052 32.4 5.2 29 156-184 163-191 (207)
130 2b0l_A GTP-sensing transcripti 53.7 6.7 0.00023 32.4 2.4 29 155-183 40-69 (102)
131 2heo_A Z-DNA binding protein 1 53.7 19 0.00064 27.2 4.8 33 51-83 20-52 (67)
132 2nnn_A Probable transcriptiona 53.3 30 0.001 28.5 6.6 28 157-184 52-79 (140)
133 2jn6_A Protein CGL2762, transp 53.2 17 0.00058 28.9 4.8 28 157-184 23-50 (97)
134 3pvv_A Chromosomal replication 53.1 28 0.00095 28.9 6.1 71 14-86 8-80 (101)
135 3d0s_A Transcriptional regulat 53.1 24 0.00081 31.8 6.3 29 156-184 176-204 (227)
136 2elh_A CG11849-PA, LD40883P; s 52.8 8.5 0.00029 30.5 2.8 25 158-182 39-63 (87)
137 2zcw_A TTHA1359, transcription 52.5 17 0.00058 32.3 5.2 29 156-184 145-173 (202)
138 1y0u_A Arsenical resistance op 51.7 14 0.00049 29.3 4.1 29 156-184 42-70 (96)
139 2y75_A HTH-type transcriptiona 51.7 17 0.00057 30.7 4.7 30 155-184 24-53 (129)
140 2l0k_A Stage III sporulation p 51.6 7.7 0.00026 31.9 2.4 23 158-180 21-43 (93)
141 1sfx_A Conserved hypothetical 51.6 12 0.00041 29.6 3.6 29 156-184 33-61 (109)
142 4ich_A Transcriptional regulat 51.5 11 0.00038 36.3 4.0 38 142-180 125-163 (311)
143 3e6c_C CPRK, cyclic nucleotide 51.4 37 0.0013 31.2 7.5 50 35-84 146-205 (250)
144 3tgn_A ADC operon repressor AD 51.0 18 0.00061 30.3 4.8 27 158-184 52-78 (146)
145 3lwf_A LIN1550 protein, putati 51.0 17 0.00057 32.5 4.8 39 146-184 33-71 (159)
146 2hr3_A Probable transcriptiona 50.8 45 0.0015 27.7 7.4 30 155-184 48-77 (147)
147 3oio_A Transcriptional regulat 50.8 40 0.0014 27.4 6.9 51 142-198 9-59 (113)
148 2pg4_A Uncharacterized protein 50.7 22 0.00074 28.1 5.0 32 153-184 26-58 (95)
149 3dkw_A DNR protein; CRP-FNR, H 50.5 19 0.00064 32.4 5.2 30 155-184 176-205 (227)
150 3kcc_A Catabolite gene activat 50.5 21 0.00072 33.4 5.7 29 156-184 216-244 (260)
151 1zyb_A Transcription regulator 50.1 19 0.00067 32.8 5.3 29 156-184 185-213 (232)
152 3neu_A LIN1836 protein; struct 50.1 13 0.00043 31.6 3.7 28 155-182 34-62 (125)
153 1pdn_C Protein (PRD paired); p 49.8 12 0.00039 30.6 3.3 28 157-184 33-60 (128)
154 1v4r_A Transcriptional repress 49.6 5.2 0.00018 32.6 1.1 29 155-183 32-61 (102)
155 3tqn_A Transcriptional regulat 49.6 10 0.00036 31.5 3.0 28 155-182 30-58 (113)
156 3oio_A Transcriptional regulat 49.3 21 0.00072 29.1 4.9 100 40-197 8-108 (113)
157 2zcm_A Biofilm operon icaabcd 49.2 22 0.00074 30.8 5.2 44 136-180 6-50 (192)
158 2hzt_A Putative HTH-type trans 48.6 21 0.00071 29.1 4.7 30 155-184 25-55 (107)
159 3by6_A Predicted transcription 48.3 11 0.00037 32.2 2.9 29 155-183 32-61 (126)
160 3e97_A Transcriptional regulat 48.2 24 0.0008 31.9 5.5 29 156-184 174-202 (231)
161 1u8b_A ADA polyprotein; protei 48.1 14 0.00048 31.2 3.7 38 54-104 91-128 (133)
162 2ek5_A Predicted transcription 47.9 15 0.00051 31.5 3.8 29 155-183 25-54 (129)
163 1uly_A Hypothetical protein PH 47.8 17 0.00059 33.3 4.5 29 156-184 32-60 (192)
164 3nrv_A Putative transcriptiona 47.7 42 0.0014 28.1 6.7 31 153-184 51-81 (148)
165 1ylf_A RRF2 family protein; st 47.6 15 0.00051 32.1 3.9 38 146-184 20-57 (149)
166 3t72_q RNA polymerase sigma fa 47.5 13 0.00046 30.6 3.3 26 156-181 38-63 (99)
167 3bro_A Transcriptional regulat 47.3 62 0.0021 26.6 7.7 29 156-184 49-77 (141)
168 1ug2_A 2610100B20RIK gene prod 46.8 39 0.0013 27.7 5.8 41 45-85 43-85 (95)
169 3t8r_A Staphylococcus aureus C 46.6 14 0.00048 32.2 3.5 39 146-184 17-55 (143)
170 2kko_A Possible transcriptiona 46.4 19 0.00066 29.4 4.1 29 156-184 37-65 (108)
171 1bl0_A Protein (multiple antib 45.9 23 0.00079 29.7 4.7 102 38-197 10-112 (129)
172 3iwz_A CAP-like, catabolite ac 45.9 24 0.00083 31.7 5.2 29 156-184 186-214 (230)
173 3df8_A Possible HXLR family tr 45.8 23 0.00078 29.3 4.6 27 158-184 43-70 (111)
174 3h5t_A Transcriptional regulat 45.7 11 0.00037 37.1 2.9 27 155-181 7-33 (366)
175 3mkl_A HTH-type transcriptiona 45.4 22 0.00075 29.4 4.4 53 139-198 6-58 (120)
176 2jpc_A SSRB; DNA binding prote 45.3 20 0.00067 25.7 3.6 31 57-87 14-44 (61)
177 1xsv_A Hypothetical UPF0122 pr 45.1 21 0.0007 29.9 4.2 27 156-182 40-66 (113)
178 1p4w_A RCSB; solution structur 45.1 15 0.00053 30.1 3.3 26 157-182 49-74 (99)
179 2fu4_A Ferric uptake regulatio 44.6 28 0.00096 26.7 4.7 28 156-183 32-64 (83)
180 1s7o_A Hypothetical UPF0122 pr 44.3 15 0.00053 30.8 3.3 27 156-182 37-63 (113)
181 1on2_A Transcriptional regulat 44.2 24 0.00083 29.8 4.6 28 156-183 21-48 (142)
182 3mzy_A RNA polymerase sigma-H 44.1 14 0.00048 31.3 3.1 27 156-182 123-149 (164)
183 3b02_A Transcriptional regulat 43.9 31 0.001 30.4 5.4 51 36-86 110-169 (195)
184 2lfw_A PHYR sigma-like domain; 43.9 13 0.00044 32.3 2.8 28 155-182 107-134 (157)
185 4fe7_A Xylose operon regulator 43.8 2.5E+02 0.0084 27.8 12.9 101 39-197 305-406 (412)
186 1r1u_A CZRA, repressor protein 43.6 20 0.00068 29.1 3.8 28 156-183 38-65 (106)
187 1ft9_A Carbon monoxide oxidati 43.6 19 0.00066 32.4 4.1 29 156-184 162-190 (222)
188 2qwt_A Transcriptional regulat 43.4 23 0.00077 31.1 4.5 38 142-180 18-55 (196)
189 1u78_A TC3 transposase, transp 43.3 16 0.00055 30.6 3.3 28 157-184 22-49 (141)
190 2pmi_B PHO85 cyclin PHO80, ami 43.2 1.6E+02 0.0056 29.0 10.9 96 99-196 78-179 (293)
191 2jsc_A Transcriptional regulat 43.1 23 0.00079 29.4 4.2 29 156-184 33-61 (118)
192 2q24_A Putative TETR family tr 43.1 21 0.00072 31.1 4.2 39 141-180 19-57 (194)
193 3k69_A Putative transcription 42.9 21 0.00071 31.9 4.1 44 39-83 12-55 (162)
194 1ub9_A Hypothetical protein PH 42.9 13 0.00045 29.1 2.5 29 156-184 29-57 (100)
195 1zyb_A Transcription regulator 42.8 53 0.0018 29.7 7.1 51 33-83 159-213 (232)
196 3kkc_A TETR family transcripti 42.5 16 0.00055 31.1 3.2 38 141-179 16-54 (177)
197 2a6h_F RNA polymerase sigma fa 42.5 2.4E+02 0.0082 28.8 12.7 26 156-181 379-404 (423)
198 1z4h_A TORI, TOR inhibition pr 42.3 17 0.00057 27.3 2.9 23 158-180 11-33 (66)
199 2hsg_A Glucose-resistance amyl 42.2 12 0.00042 36.0 2.7 24 157-180 2-25 (332)
200 1bl0_A Protein (multiple antib 42.1 49 0.0017 27.6 6.2 54 139-198 10-63 (129)
201 2bgc_A PRFA; bacterial infecti 41.8 38 0.0013 30.9 5.9 29 156-184 167-197 (238)
202 3frw_A Putative Trp repressor 41.6 24 0.00081 29.9 3.9 29 156-184 57-85 (107)
203 1qpz_A PURA, protein (purine n 41.5 18 0.00061 35.0 3.7 22 158-179 1-22 (340)
204 2p7v_B Sigma-70, RNA polymeras 41.4 32 0.0011 25.4 4.4 33 55-87 24-56 (68)
205 2hku_A A putative transcriptio 41.2 33 0.0011 30.3 5.2 42 138-180 21-62 (215)
206 2fmy_A COOA, carbon monoxide o 41.0 41 0.0014 30.1 5.9 48 37-84 138-195 (220)
207 2nnn_A Probable transcriptiona 41.0 95 0.0033 25.3 7.9 31 56-86 52-82 (140)
208 2a61_A Transcriptional regulat 41.0 30 0.001 28.7 4.7 29 156-184 46-74 (145)
209 3bru_A Regulatory protein, TET 41.0 26 0.00089 30.9 4.5 40 140-180 33-73 (222)
210 1neq_A DNA-binding protein NER 40.9 22 0.00077 27.4 3.5 25 155-179 20-44 (74)
211 3ulq_B Transcriptional regulat 40.9 30 0.001 27.6 4.4 32 56-87 44-75 (90)
212 1k78_A Paired box protein PAX5 40.6 21 0.00073 30.5 3.7 27 157-183 48-74 (149)
213 2f2e_A PA1607; transcription f 40.5 29 0.00099 30.1 4.6 29 156-184 36-64 (146)
214 2zkz_A Transcriptional repress 40.5 17 0.00059 29.3 2.9 28 156-183 40-67 (99)
215 1xd7_A YWNA; structural genomi 40.4 31 0.0011 29.8 4.8 45 36-83 6-50 (145)
216 3g3z_A NMB1585, transcriptiona 40.3 98 0.0033 25.6 7.9 28 157-184 45-72 (145)
217 3f6o_A Probable transcriptiona 40.1 20 0.00069 29.7 3.3 30 155-184 29-58 (118)
218 1fse_A GERE; helix-turn-helix 40.1 33 0.0011 25.3 4.3 31 57-87 27-57 (74)
219 4ell_A Retinoblastoma-associat 40.1 52 0.0018 34.1 7.0 63 102-165 286-350 (411)
220 3dv8_A Transcriptional regulat 39.9 58 0.002 28.8 6.7 49 36-84 146-197 (220)
221 3qkx_A Uncharacterized HTH-typ 39.9 28 0.00095 29.6 4.4 40 141-181 12-52 (188)
222 2lkp_A Transcriptional regulat 39.7 35 0.0012 28.0 4.8 28 156-183 44-71 (119)
223 1j9i_A GPNU1 DBD;, terminase s 39.7 13 0.00046 27.9 2.0 23 158-180 3-25 (68)
224 3bqz_B HTH-type transcriptiona 39.3 33 0.0011 29.4 4.8 38 142-180 7-45 (194)
225 4ev0_A Transcription regulator 39.3 30 0.001 30.7 4.6 29 156-184 162-190 (216)
226 3bpv_A Transcriptional regulat 39.1 29 0.001 28.5 4.3 30 155-184 41-70 (138)
227 4a0z_A Transcription factor FA 38.9 34 0.0011 31.4 4.9 31 155-185 24-54 (190)
228 4a5n_A Uncharacterized HTH-typ 38.7 36 0.0012 29.4 4.8 30 155-184 37-67 (131)
229 1ku9_A Hypothetical protein MJ 38.6 61 0.0021 26.7 6.3 30 155-184 39-68 (152)
230 2l8n_A Transcriptional repress 38.4 16 0.00054 27.9 2.2 23 54-76 7-29 (67)
231 1u8b_A ADA polyprotein; protei 38.3 38 0.0013 28.4 4.9 38 155-197 91-128 (133)
232 3knw_A Putative transcriptiona 38.2 32 0.0011 30.0 4.5 40 140-180 17-57 (212)
233 3e7l_A Transcriptional regulat 38.2 37 0.0013 25.0 4.3 25 159-183 34-58 (63)
234 2gau_A Transcriptional regulat 38.1 67 0.0023 28.8 6.9 48 36-83 151-207 (232)
235 3bro_A Transcriptional regulat 38.1 76 0.0026 26.0 6.8 41 43-83 37-77 (141)
236 1ntc_A Protein (nitrogen regul 37.7 26 0.00088 28.0 3.5 28 153-182 62-89 (91)
237 2xi8_A Putative transcription 37.7 21 0.00072 25.4 2.8 39 156-199 13-51 (66)
238 2qvo_A Uncharacterized protein 37.4 39 0.0013 26.7 4.6 29 156-184 29-57 (95)
239 1rzs_A Antirepressor, regulato 37.3 19 0.00065 26.5 2.5 21 158-178 11-31 (61)
240 1or7_A Sigma-24, RNA polymeras 37.2 27 0.00094 30.6 4.0 28 155-182 154-181 (194)
241 3lwj_A Putative TETR-family tr 37.2 34 0.0012 29.6 4.6 38 142-180 17-55 (202)
242 1j1v_A Chromosomal replication 37.2 52 0.0018 26.7 5.3 71 14-86 4-77 (94)
243 2oqg_A Possible transcriptiona 37.2 27 0.00093 28.1 3.7 28 156-183 33-60 (114)
244 1r1t_A Transcriptional repress 37.0 41 0.0014 28.2 4.8 28 156-183 58-85 (122)
245 3ppb_A Putative TETR family tr 37.0 34 0.0012 29.2 4.5 41 140-181 12-53 (195)
246 3kz3_A Repressor protein CI; f 36.7 21 0.00071 27.2 2.7 39 156-199 24-62 (80)
247 2qtq_A Transcriptional regulat 36.6 45 0.0015 28.9 5.3 41 140-181 19-60 (213)
248 3eco_A MEPR; mutlidrug efflux 36.4 32 0.0011 28.5 4.1 29 156-184 46-74 (139)
249 1bia_A BIRA bifunctional prote 36.4 30 0.001 34.2 4.5 31 154-184 16-46 (321)
250 1x3u_A Transcriptional regulat 36.3 40 0.0014 25.3 4.3 32 56-87 31-62 (79)
251 3fm5_A Transcriptional regulat 36.2 41 0.0014 28.3 4.8 31 154-184 51-81 (150)
252 3kjx_A Transcriptional regulat 36.1 15 0.00052 35.6 2.2 25 156-180 9-33 (344)
253 1u2w_A CADC repressor, cadmium 36.0 28 0.00094 29.1 3.6 29 155-183 54-82 (122)
254 3mky_B Protein SOPB; partition 36.0 41 0.0014 31.2 4.9 36 147-182 32-67 (189)
255 2glo_A Brinker CG9653-PA; prot 35.9 19 0.00066 26.1 2.3 23 160-182 28-50 (59)
256 2fq4_A Transcriptional regulat 35.9 37 0.0013 29.5 4.6 37 142-179 17-54 (192)
257 3f1b_A TETR-like transcription 35.8 37 0.0013 29.2 4.6 38 142-180 19-57 (203)
258 3mkl_A HTH-type transcriptiona 35.8 35 0.0012 28.1 4.2 99 40-197 8-107 (120)
259 3omt_A Uncharacterized protein 35.7 22 0.00076 26.3 2.7 40 156-200 20-59 (73)
260 1je8_A Nitrate/nitrite respons 35.5 41 0.0014 26.1 4.3 31 57-87 37-67 (82)
261 3nxc_A HTH-type protein SLMA; 35.3 27 0.00091 30.5 3.6 41 139-179 26-67 (212)
262 2r1j_L Repressor protein C2; p 35.3 23 0.0008 25.4 2.7 38 156-198 17-54 (68)
263 1ku3_A Sigma factor SIGA; heli 35.3 46 0.0016 24.9 4.5 31 55-85 29-59 (73)
264 2oz6_A Virulence factor regula 35.2 33 0.0011 30.1 4.2 29 55-83 163-191 (207)
265 3r0a_A Putative transcriptiona 35.2 50 0.0017 27.6 5.1 38 46-83 31-69 (123)
266 2v57_A TETR family transcripti 35.0 25 0.00085 30.2 3.2 38 141-180 18-55 (190)
267 3fx3_A Cyclic nucleotide-bindi 34.9 42 0.0014 30.3 4.9 50 36-86 152-207 (237)
268 2fbh_A Transcriptional regulat 34.9 47 0.0016 27.5 4.9 30 154-183 49-78 (146)
269 3vp5_A Transcriptional regulat 34.8 36 0.0012 29.7 4.3 40 140-180 15-55 (189)
270 2gxg_A 146AA long hypothetical 34.7 39 0.0013 28.1 4.4 30 155-184 48-77 (146)
271 1qgp_A Protein (double strande 34.7 58 0.002 25.2 5.0 31 54-84 29-59 (77)
272 1tty_A Sigma-A, RNA polymerase 34.6 49 0.0017 25.8 4.7 32 55-86 37-68 (87)
273 2nyx_A Probable transcriptiona 34.5 53 0.0018 28.4 5.4 28 157-184 59-86 (168)
274 3ryp_A Catabolite gene activat 34.5 44 0.0015 29.4 4.9 29 55-83 166-194 (210)
275 1l3l_A Transcriptional activat 34.5 31 0.0011 32.0 4.0 27 156-182 187-213 (234)
276 1z7u_A Hypothetical protein EF 34.5 32 0.0011 28.2 3.7 28 156-183 34-62 (112)
277 4fx0_A Probable transcriptiona 34.5 52 0.0018 28.2 5.2 29 156-184 51-79 (148)
278 3deu_A Transcriptional regulat 34.4 87 0.003 27.1 6.8 31 154-184 65-95 (166)
279 2rn7_A IS629 ORFA; helix, all 34.2 24 0.00083 28.5 2.9 27 158-184 31-57 (108)
280 1pb6_A Hypothetical transcript 34.2 41 0.0014 29.2 4.6 39 141-180 22-61 (212)
281 1qbj_A Protein (double-strande 34.1 46 0.0016 26.3 4.4 31 54-84 25-55 (81)
282 2a6c_A Helix-turn-helix motif; 34.0 33 0.0011 26.4 3.5 43 153-199 27-69 (83)
283 2g7s_A Transcriptional regulat 33.9 32 0.0011 29.3 3.8 39 141-180 12-51 (194)
284 3vpr_A Transcriptional regulat 33.9 54 0.0018 28.2 5.3 38 142-180 8-46 (190)
285 1zug_A Phage 434 CRO protein; 33.7 25 0.00087 25.5 2.7 25 156-180 15-39 (71)
286 2htj_A P fimbrial regulatory p 33.7 77 0.0026 24.1 5.7 29 55-83 13-41 (81)
287 3ech_A MEXR, multidrug resista 33.7 67 0.0023 26.6 5.7 28 157-184 51-78 (142)
288 3lhq_A Acrab operon repressor 33.6 41 0.0014 29.2 4.5 39 141-180 18-57 (220)
289 1p4x_A Staphylococcal accessor 33.5 2.6E+02 0.009 26.3 10.5 131 44-183 38-200 (250)
290 1rp3_A RNA polymerase sigma fa 33.4 33 0.0011 31.0 3.9 27 155-181 201-227 (239)
291 2rdp_A Putative transcriptiona 33.3 1.1E+02 0.0036 25.4 7.0 29 156-184 55-83 (150)
292 3dcf_A Transcriptional regulat 33.3 41 0.0014 29.3 4.5 39 141-180 35-74 (218)
293 1r69_A Repressor protein CI; g 33.3 27 0.00093 25.1 2.8 25 156-180 13-37 (69)
294 1u78_A TC3 transposase, transp 33.1 36 0.0012 28.3 3.9 70 2-79 26-102 (141)
295 3c57_A Two component transcrip 33.1 46 0.0016 26.5 4.3 31 57-87 43-73 (95)
296 3c7j_A Transcriptional regulat 32.9 32 0.0011 32.3 3.8 29 154-182 46-74 (237)
297 1t33_A Putative transcriptiona 32.8 46 0.0016 29.3 4.8 39 141-180 16-54 (224)
298 1p4w_A RCSB; solution structur 32.7 46 0.0016 27.1 4.3 31 57-87 50-80 (99)
299 3kz9_A SMCR; transcriptional r 32.7 41 0.0014 28.9 4.4 38 142-180 22-60 (206)
300 1uxc_A FRUR (1-57), fructose r 32.7 35 0.0012 25.7 3.3 21 57-77 1-21 (65)
301 2eth_A Transcriptional regulat 32.7 43 0.0015 28.4 4.4 28 157-184 58-85 (154)
302 2o3f_A Putative HTH-type trans 32.7 30 0.001 28.8 3.2 26 157-182 39-64 (111)
303 2rae_A Transcriptional regulat 32.6 52 0.0018 28.5 5.0 40 140-180 20-60 (207)
304 2zcw_A TTHA1359, transcription 32.4 39 0.0013 29.8 4.2 48 36-83 117-173 (202)
305 2d6y_A Putative TETR family re 32.4 58 0.002 28.6 5.4 40 140-180 11-51 (202)
306 1tbx_A ORF F-93, hypothetical 32.2 44 0.0015 26.3 4.1 29 155-183 20-52 (99)
307 3col_A Putative transcription 32.2 36 0.0012 29.0 3.8 41 139-180 12-53 (196)
308 3nrv_A Putative transcriptiona 32.2 1.2E+02 0.004 25.2 7.1 31 52-83 51-81 (148)
309 3bdd_A Regulatory protein MARR 32.2 35 0.0012 28.1 3.6 29 156-184 44-72 (142)
310 3dkw_A DNR protein; CRP-FNR, H 32.2 45 0.0015 29.7 4.6 33 54-86 176-208 (227)
311 3lfp_A CSP231I C protein; tran 32.1 83 0.0028 24.7 5.7 43 156-199 13-55 (98)
312 3dew_A Transcriptional regulat 32.0 36 0.0012 29.2 3.8 41 140-181 11-52 (206)
313 2yve_A Transcriptional regulat 32.0 43 0.0015 29.0 4.3 39 141-180 8-47 (185)
314 1yyv_A Putative transcriptiona 32.0 36 0.0012 29.0 3.7 29 155-183 46-75 (131)
315 2b5a_A C.BCLI; helix-turn-heli 31.9 29 0.00098 25.7 2.8 39 156-199 22-60 (77)
316 2k9q_A Uncharacterized protein 31.9 28 0.00095 26.1 2.7 38 156-198 14-51 (77)
317 2fa5_A Transcriptional regulat 31.8 51 0.0017 28.0 4.7 30 155-184 61-90 (162)
318 3fmy_A HTH-type transcriptiona 31.8 21 0.00073 26.9 2.0 24 156-179 23-46 (73)
319 3kor_A Possible Trp repressor; 31.7 32 0.0011 29.6 3.2 28 156-183 74-101 (119)
320 1o5l_A Transcriptional regulat 31.6 16 0.00056 32.8 1.5 30 155-184 162-191 (213)
321 2kpj_A SOS-response transcript 31.6 42 0.0014 26.3 3.8 41 153-198 18-58 (94)
322 3nqo_A MARR-family transcripti 31.5 77 0.0026 28.1 6.0 30 155-184 55-84 (189)
323 3b7h_A Prophage LP1 protein 11 31.5 30 0.001 25.7 2.8 40 156-199 19-58 (78)
324 3gzi_A Transcriptional regulat 31.4 46 0.0016 29.1 4.5 38 142-180 22-60 (218)
325 3bj6_A Transcriptional regulat 31.3 91 0.0031 25.9 6.2 29 156-184 53-81 (152)
326 2o8x_A Probable RNA polymerase 31.2 55 0.0019 23.7 4.2 29 57-85 32-60 (70)
327 1s3j_A YUSO protein; structura 31.2 51 0.0017 27.7 4.6 29 156-184 50-78 (155)
328 3c2b_A Transcriptional regulat 31.2 47 0.0016 29.2 4.5 39 141-180 19-58 (221)
329 2fsw_A PG_0823 protein; alpha- 31.1 45 0.0015 27.0 4.0 30 155-184 36-66 (107)
330 2ao9_A Phage protein; structur 31.1 71 0.0024 28.6 5.6 24 157-180 48-71 (155)
331 3s5r_A Transcriptional regulat 31.0 45 0.0015 29.0 4.3 40 140-180 13-53 (216)
332 1adr_A P22 C2 repressor; trans 30.9 30 0.001 25.5 2.7 38 156-198 17-54 (76)
333 3dpj_A Transcription regulator 30.9 50 0.0017 28.3 4.6 38 141-179 12-50 (194)
334 3edp_A LIN2111 protein; APC883 30.9 32 0.0011 32.3 3.5 29 155-183 30-59 (236)
335 3rd3_A Probable transcriptiona 30.9 51 0.0018 28.1 4.6 41 138-179 11-52 (197)
336 3cwr_A Transcriptional regulat 30.8 38 0.0013 29.2 3.8 38 142-180 22-60 (208)
337 3bs3_A Putative DNA-binding pr 30.8 30 0.001 25.5 2.7 39 156-199 22-60 (76)
338 3cjn_A Transcriptional regulat 30.7 42 0.0014 28.6 4.0 30 155-184 64-93 (162)
339 3on4_A Transcriptional regulat 30.6 39 0.0013 28.7 3.8 40 140-180 13-53 (191)
340 2pij_A Prophage PFL 6 CRO; tra 30.6 60 0.002 23.4 4.3 21 159-179 15-35 (67)
341 3kz3_A Repressor protein CI; f 30.6 79 0.0027 23.7 5.2 41 56-110 25-65 (80)
342 3f0c_A TETR-molecule A, transc 30.5 49 0.0017 28.8 4.5 41 139-180 13-54 (216)
343 3bd1_A CRO protein; transcript 30.5 34 0.0012 25.9 3.0 22 159-180 13-34 (79)
344 2iu5_A DHAS, YCEG, HTH-type dh 30.3 27 0.00092 30.4 2.7 42 138-180 14-56 (195)
345 2o20_A Catabolite control prot 30.3 11 0.00037 36.5 0.0 25 157-181 5-29 (332)
346 3qq6_A HTH-type transcriptiona 30.3 30 0.001 26.3 2.7 40 156-199 22-61 (78)
347 2zb9_A Putative transcriptiona 30.3 39 0.0013 29.7 3.8 38 142-180 28-66 (214)
348 3b81_A Transcriptional regulat 30.2 53 0.0018 28.3 4.6 38 141-179 15-53 (203)
349 2q0o_A Probable transcriptiona 30.2 32 0.0011 31.9 3.3 27 156-182 189-215 (236)
350 3mvp_A TETR/ACRR transcription 30.1 39 0.0013 29.4 3.8 38 142-180 31-69 (217)
351 3bwg_A Uncharacterized HTH-typ 30.1 35 0.0012 32.0 3.6 30 154-183 25-55 (239)
352 1y7y_A C.AHDI; helix-turn-heli 30.1 33 0.0011 25.1 2.8 39 156-199 25-63 (74)
353 3hug_A RNA polymerase sigma fa 30.0 54 0.0019 25.7 4.2 30 56-85 53-82 (92)
354 3d0s_A Transcriptional regulat 30.0 93 0.0032 27.7 6.4 30 55-84 176-205 (227)
355 3cdh_A Transcriptional regulat 29.8 52 0.0018 27.8 4.4 30 155-184 55-84 (155)
356 2wui_A MEXZ, transcriptional r 29.7 42 0.0014 29.6 3.9 38 141-179 15-53 (210)
357 3jsj_A Putative TETR-family tr 29.6 45 0.0016 28.6 4.0 39 140-179 12-50 (190)
358 2hin_A GP39, repressor protein 29.6 37 0.0013 26.3 3.0 22 159-180 12-33 (71)
359 3bhq_A Transcriptional regulat 29.6 68 0.0023 28.1 5.3 37 142-179 17-54 (211)
360 2h09_A Transcriptional regulat 29.5 40 0.0014 28.8 3.7 29 156-184 53-81 (155)
361 3t76_A VANU, transcriptional r 29.5 31 0.0011 27.5 2.7 40 156-201 36-75 (88)
362 3bni_A Putative TETR-family tr 29.4 52 0.0018 29.5 4.6 39 141-180 47-86 (229)
363 1hw1_A FADR, fatty acid metabo 29.3 39 0.0013 31.2 3.8 29 154-182 27-56 (239)
364 3he0_A Transcriptional regulat 29.3 57 0.002 27.8 4.7 41 138-179 12-53 (196)
365 2lr8_A CAsp8-associated protei 35.4 12 0.00039 29.3 0.0 41 45-85 24-65 (70)
366 1zs4_A Regulatory protein CII; 29.0 38 0.0013 27.3 3.0 24 158-181 25-48 (83)
367 2d1h_A ST1889, 109AA long hypo 29.0 70 0.0024 24.9 4.8 30 54-83 34-63 (109)
368 1jgs_A Multiple antibiotic res 29.0 1.5E+02 0.0051 24.1 7.1 29 156-184 47-75 (138)
369 1umq_A Photosynthetic apparatu 28.9 36 0.0012 27.1 2.9 23 159-181 56-78 (81)
370 2pex_A Transcriptional regulat 28.9 48 0.0016 27.9 4.0 30 155-184 59-88 (153)
371 3ivp_A Putative transposon-rel 28.9 2.1E+02 0.0073 23.2 8.1 74 56-130 25-111 (126)
372 3u2r_A Regulatory protein MARR 28.8 88 0.003 26.8 5.8 29 155-183 60-88 (168)
373 2ibd_A Possible transcriptiona 28.8 56 0.0019 28.6 4.5 37 142-179 19-56 (204)
374 2wv0_A YVOA, HTH-type transcri 28.7 38 0.0013 31.9 3.6 30 154-183 30-60 (243)
375 3qbm_A TETR transcriptional re 28.7 59 0.002 27.8 4.6 38 141-179 11-49 (199)
376 1sgm_A Putative HTH-type trans 28.7 29 0.00099 29.6 2.5 40 140-180 9-49 (191)
377 3f8m_A GNTR-family protein tra 28.7 38 0.0013 32.0 3.6 31 153-183 31-62 (248)
378 3f6w_A XRE-family like protein 28.7 34 0.0011 25.9 2.7 39 156-199 26-64 (83)
379 2guh_A Putative TETR-family tr 28.6 51 0.0017 29.5 4.3 39 141-180 43-82 (214)
380 3e97_A Transcriptional regulat 28.6 78 0.0027 28.3 5.6 30 55-84 174-203 (231)
381 2ras_A Transcriptional regulat 28.5 57 0.002 28.5 4.6 38 141-179 15-53 (212)
382 1lj9_A Transcriptional regulat 28.5 49 0.0017 27.4 4.0 29 156-184 42-70 (144)
383 3anp_C Transcriptional repress 28.5 57 0.002 28.4 4.6 37 142-179 14-51 (204)
384 3s8q_A R-M controller protein; 28.4 34 0.0012 25.8 2.7 39 156-199 23-61 (82)
385 2fbi_A Probable transcriptiona 28.4 40 0.0014 27.8 3.3 28 156-183 49-76 (142)
386 4ev0_A Transcription regulator 28.4 80 0.0027 27.8 5.6 48 39-86 143-193 (216)
387 3eco_A MEPR; mutlidrug efflux 28.2 1.1E+02 0.0039 24.9 6.2 40 44-83 35-74 (139)
388 2ef8_A C.ECOT38IS, putative tr 28.1 35 0.0012 25.7 2.7 24 156-179 22-45 (84)
389 3iwf_A Transcription regulator 28.0 44 0.0015 27.7 3.4 27 156-182 34-60 (107)
390 3ic7_A Putative transcriptiona 28.0 11 0.00039 32.0 -0.2 30 154-183 31-61 (126)
391 2rek_A Putative TETR-family tr 27.9 51 0.0017 28.5 4.1 38 141-179 20-57 (199)
392 2gqq_A Leucine-responsive regu 27.8 10 0.00035 33.5 -0.6 34 151-184 21-54 (163)
393 2wiu_B HTH-type transcriptiona 27.8 44 0.0015 25.4 3.3 39 156-199 24-62 (88)
394 2gen_A Probable transcriptiona 27.8 65 0.0022 28.0 4.8 38 141-179 11-49 (197)
395 2dg7_A Putative transcriptiona 27.8 42 0.0015 29.0 3.5 40 141-181 11-51 (195)
396 2ict_A Antitoxin HIGA; helix-t 27.7 42 0.0015 26.1 3.2 38 156-198 20-57 (94)
397 2rnj_A Response regulator prot 27.7 43 0.0015 26.3 3.2 32 56-87 44-75 (91)
398 1zk8_A Transcriptional regulat 27.6 49 0.0017 28.2 3.8 40 139-179 10-50 (183)
399 1z91_A Organic hydroperoxide r 27.6 40 0.0014 28.1 3.2 27 157-183 54-80 (147)
400 2f07_A YVDT; helix-turn-helix, 27.5 61 0.0021 28.2 4.6 38 140-178 13-51 (197)
401 3h5o_A Transcriptional regulat 27.4 13 0.00044 36.0 0.0 46 156-203 3-48 (339)
402 3uj3_X DNA-invertase; helix-tu 27.4 13 0.00044 33.7 0.0 53 131-184 133-185 (193)
403 2cw1_A SN4M; lambda CRO fold, 27.4 41 0.0014 25.5 2.9 23 159-181 15-37 (65)
404 2dg8_A Putative TETR-family tr 27.4 42 0.0014 29.1 3.4 42 138-180 10-52 (193)
405 1d5y_A ROB transcription facto 27.4 42 0.0014 31.7 3.7 99 41-197 5-104 (292)
406 3crj_A Transcription regulator 27.3 63 0.0022 28.2 4.6 37 141-178 18-55 (199)
407 4aci_A HTH-type transcriptiona 27.2 37 0.0013 29.1 3.0 40 140-180 17-57 (191)
408 2qww_A Transcriptional regulat 27.2 47 0.0016 28.0 3.6 29 156-184 54-82 (154)
409 3kcc_A Catabolite gene activat 27.2 90 0.0031 28.9 5.9 47 37-83 189-244 (260)
410 1g2h_A Transcriptional regulat 27.1 37 0.0013 25.0 2.5 24 159-182 35-58 (61)
411 1x57_A Endothelial differentia 27.1 60 0.0021 25.0 4.0 41 154-199 23-63 (91)
412 3vib_A MTRR; helix-turn-helix 27.1 62 0.0021 28.3 4.6 37 142-179 15-52 (210)
413 1b4a_A Arginine repressor; hel 27.0 39 0.0013 30.0 3.1 30 155-184 17-51 (149)
414 2pg4_A Uncharacterized protein 26.9 75 0.0026 24.8 4.6 32 52-83 26-58 (95)
415 3o60_A LIN0861 protein; PSI, M 26.9 43 0.0015 29.5 3.5 39 141-180 23-63 (185)
416 3g7r_A Putative transcriptiona 26.9 62 0.0021 28.8 4.6 39 140-179 38-77 (221)
417 2bgc_A PRFA; bacterial infecti 26.8 83 0.0028 28.5 5.5 28 56-83 169-197 (238)
418 3jw4_A Transcriptional regulat 26.8 41 0.0014 28.2 3.2 29 156-184 56-84 (148)
419 3rh2_A Hypothetical TETR-like 26.7 49 0.0017 29.0 3.8 39 141-180 7-46 (212)
420 3eus_A DNA-binding protein; st 26.7 38 0.0013 26.2 2.7 39 156-199 26-64 (86)
421 3clo_A Transcriptional regulat 26.6 40 0.0014 31.8 3.3 28 156-183 211-238 (258)
422 3iwz_A CAP-like, catabolite ac 26.5 56 0.0019 29.1 4.2 47 37-83 159-214 (230)
423 3eet_A Putative GNTR-family tr 26.4 43 0.0015 32.2 3.6 30 154-183 49-79 (272)
424 3szt_A QCSR, quorum-sensing co 26.4 41 0.0014 31.4 3.3 27 156-182 189-215 (237)
425 3pas_A TETR family transcripti 26.3 30 0.001 29.5 2.3 39 141-180 12-51 (195)
426 2dk5_A DNA-directed RNA polyme 26.3 59 0.002 26.2 3.8 28 155-182 34-61 (91)
427 2o7t_A Transcriptional regulat 26.3 47 0.0016 28.9 3.5 39 141-180 12-51 (199)
428 3nnr_A Transcriptional regulat 26.3 49 0.0017 29.4 3.8 40 140-180 8-48 (228)
429 1stz_A Heat-inducible transcri 26.2 42 0.0014 33.6 3.5 31 153-183 32-64 (338)
430 3gbg_A TCP pilus virulence reg 26.2 63 0.0022 30.2 4.7 55 137-198 166-220 (276)
431 2iai_A Putative transcriptiona 26.2 66 0.0023 28.8 4.7 38 141-179 34-72 (230)
432 2xdn_A HTH-type transcriptiona 26.1 49 0.0017 29.0 3.7 38 141-179 15-53 (210)
433 1jhg_A Trp operon repressor; c 26.0 64 0.0022 26.8 4.0 30 54-84 56-85 (101)
434 3f6v_A Possible transcriptiona 26.0 46 0.0016 29.2 3.4 30 155-184 69-98 (151)
435 3k0l_A Repressor protein; heli 25.9 1.2E+02 0.0039 25.9 6.0 29 156-184 59-87 (162)
436 1t6s_A Conserved hypothetical 25.9 53 0.0018 29.6 3.8 38 141-182 10-49 (162)
437 3hrs_A Metalloregulator SCAR; 25.9 45 0.0015 30.8 3.4 30 155-184 18-47 (214)
438 3q0w_A HTH-type transcriptiona 25.8 46 0.0016 30.0 3.5 39 141-180 48-87 (236)
439 4hbl_A Transcriptional regulat 25.8 51 0.0018 27.8 3.6 29 155-183 53-81 (149)
440 3egq_A TETR family transcripti 25.7 37 0.0013 28.6 2.7 38 142-180 9-47 (170)
441 3ech_A MEXR, multidrug resista 25.7 1.1E+02 0.0039 25.1 5.8 28 56-83 51-78 (142)
442 3hsr_A HTH-type transcriptiona 25.7 1.2E+02 0.004 25.1 5.9 30 155-184 48-77 (140)
443 2i10_A Putative TETR transcrip 25.7 88 0.003 27.3 5.3 38 141-179 15-53 (202)
444 2jj7_A Hemolysin II regulatory 25.6 42 0.0014 28.7 3.0 39 142-181 12-51 (186)
445 3ljl_A Transcriptional regulat 25.5 31 0.0011 29.2 2.1 39 141-180 18-57 (156)
446 3sxy_A Transcriptional regulat 25.4 42 0.0014 30.7 3.1 29 154-182 32-60 (218)
447 3s2w_A Transcriptional regulat 25.3 53 0.0018 27.9 3.7 30 155-184 62-91 (159)
448 2frh_A SARA, staphylococcal ac 25.3 44 0.0015 27.8 3.0 38 146-183 42-79 (127)
449 1eto_A FIS, factor for inversi 25.2 55 0.0019 26.8 3.5 23 159-181 73-95 (98)
450 1z6r_A MLC protein; transcript 25.2 67 0.0023 32.2 4.9 32 153-184 26-57 (406)
451 2ewt_A BLDD, putative DNA-bind 25.2 54 0.0018 23.7 3.2 39 156-199 20-60 (71)
452 2id3_A Putative transcriptiona 25.1 69 0.0023 28.6 4.5 38 142-180 45-83 (225)
453 3nrg_A TETR family transcripti 25.1 34 0.0012 29.9 2.4 40 140-180 16-56 (217)
454 4ghj_A Probable transcriptiona 25.0 41 0.0014 27.6 2.7 37 156-199 48-84 (101)
455 1rkt_A Protein YFIR; transcrip 24.9 74 0.0025 27.7 4.6 36 142-178 17-53 (205)
456 1lmb_3 Protein (lambda repress 24.7 43 0.0015 25.8 2.7 39 156-199 29-67 (92)
457 2eh3_A Transcriptional regulat 24.6 76 0.0026 27.0 4.5 27 153-179 17-44 (179)
458 2of7_A Putative TETR-family tr 24.6 69 0.0024 29.5 4.5 38 142-180 53-91 (260)
459 1bja_A Transcription regulator 24.5 93 0.0032 25.5 4.7 39 44-83 19-58 (95)
460 3bja_A Transcriptional regulat 24.4 32 0.0011 28.2 2.0 30 155-184 45-74 (139)
461 2k27_A Paired box protein PAX- 24.4 20 0.00068 31.2 0.7 28 157-184 41-68 (159)
462 2ppx_A AGR_C_3184P, uncharacte 24.3 46 0.0016 26.4 2.8 24 156-179 42-65 (99)
463 3k69_A Putative transcription 24.0 63 0.0022 28.6 3.9 38 146-184 18-55 (162)
464 1gdt_A GD resolvase, protein ( 24.0 1.6E+02 0.0055 26.0 6.7 46 130-179 135-180 (183)
465 3k2z_A LEXA repressor; winged 23.8 1E+02 0.0035 27.7 5.4 38 46-83 14-51 (196)
466 3u2r_A Regulatory protein MARR 23.8 90 0.0031 26.8 4.9 40 44-83 50-89 (168)
467 3jvd_A Transcriptional regulat 23.8 17 0.00057 35.3 0.0 46 156-203 5-50 (333)
468 2hyt_A TETR-family transcripti 23.8 77 0.0026 27.5 4.5 38 142-180 17-55 (197)
469 2q1z_A RPOE, ECF SIGE; ECF sig 23.8 19 0.00065 31.5 0.4 27 156-182 150-176 (184)
470 1xn7_A Hypothetical protein YH 23.8 93 0.0032 24.3 4.4 33 54-86 14-46 (78)
471 1jye_A Lactose operon represso 23.7 17 0.00057 35.5 0.0 44 157-202 3-46 (349)
472 3k8u_A Putative ABC transporte 23.6 1.2E+02 0.0041 26.0 5.7 57 32-88 8-65 (156)
473 2l1p_A DNA-binding protein SAT 23.6 45 0.0015 26.8 2.5 23 157-179 32-54 (83)
474 4b8x_A SCO5413, possible MARR- 23.5 44 0.0015 28.5 2.7 30 155-184 49-78 (147)
475 1vi0_A Transcriptional regulat 23.4 61 0.0021 28.5 3.8 38 141-179 12-50 (206)
476 3dbi_A Sugar-binding transcrip 23.4 17 0.00058 35.1 0.0 45 157-203 3-47 (338)
477 2wte_A CSA3; antiviral protein 23.4 69 0.0023 30.5 4.3 29 156-184 165-193 (244)
478 1sfx_A Conserved hypothetical 23.3 1.2E+02 0.0041 23.4 5.2 29 55-83 33-61 (109)
479 3cdl_A Transcriptional regulat 23.2 84 0.0029 27.4 4.7 37 141-178 13-50 (203)
480 3frq_A Repressor protein MPHR( 23.1 49 0.0017 28.5 3.0 40 140-180 11-51 (195)
481 2w53_A Repressor, SMet; antibi 23.0 84 0.0029 27.6 4.7 39 139-178 13-52 (219)
482 3e3m_A Transcriptional regulat 22.9 18 0.00061 35.4 0.0 25 157-181 12-36 (355)
483 1z0x_A Transcriptional regulat 22.9 82 0.0028 28.4 4.6 43 138-180 6-49 (220)
484 2r0q_C Putative transposon TN5 22.9 1.4E+02 0.0047 27.1 6.2 26 156-181 174-199 (209)
485 2np5_A Transcriptional regulat 22.9 63 0.0022 28.3 3.8 38 141-179 13-51 (203)
486 1q1h_A TFE, transcription fact 22.6 1.2E+02 0.0042 24.2 5.2 31 53-83 30-60 (110)
487 2l49_A C protein; P2 bacteriop 22.6 49 0.0017 25.8 2.7 38 156-198 16-53 (99)
488 3bqy_A Putative TETR family tr 22.6 73 0.0025 28.6 4.2 41 139-180 4-45 (209)
489 3bil_A Probable LACI-family tr 22.6 18 0.00062 35.3 0.0 25 157-181 8-32 (348)
490 1ui5_A A-factor receptor homol 22.6 84 0.0029 27.8 4.6 38 141-179 13-51 (215)
491 3oop_A LIN2960 protein; protei 22.5 2.4E+02 0.0083 23.0 7.3 63 117-183 15-77 (143)
492 3qp6_A CVIR transcriptional re 22.5 53 0.0018 31.3 3.3 28 156-183 211-238 (265)
493 3bjb_A Probable transcriptiona 22.5 60 0.002 28.7 3.5 38 141-179 26-64 (207)
494 2hs5_A Putative transcriptiona 22.5 52 0.0018 30.7 3.2 29 154-182 48-76 (239)
495 2zcx_A SCO7815, TETR-family tr 22.4 82 0.0028 28.5 4.5 39 141-180 27-66 (231)
496 3f3x_A Transcriptional regulat 22.4 71 0.0024 26.5 3.8 26 159-184 52-77 (144)
497 3op9_A PLI0006 protein; struct 22.4 59 0.002 26.3 3.2 39 156-199 21-59 (114)
498 2x4h_A Hypothetical protein SS 22.4 2.1E+02 0.0073 23.4 6.9 31 53-83 28-58 (139)
499 1vz0_A PARB, chromosome partit 22.2 83 0.0028 29.6 4.6 40 138-181 119-158 (230)
500 3mnl_A KSTR, transcriptional r 22.2 40 0.0014 29.0 2.2 39 142-181 25-64 (203)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=1.6e-42 Score=356.73 Aligned_cols=189 Identities=14% Similarity=0.227 Sum_probs=80.9
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|++||++|+|| ++|+++|..||++++++++++||+.++|+|||||+|||++++||||+||+++++|++++||++|+.|
T Consensus 133 I~~~~~~L~Lp--~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~k~l 210 (345)
T 4bbr_M 133 ITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIM 210 (345)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHHHHH
Confidence 67899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccc-------ccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHh
Q 011262 81 CQVLYIADESN-------VLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALT 153 (490)
Q Consensus 81 ~~~L~i~~~~~-------~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~ 153 (490)
.+.|++...+. ....++|+.||+|||++|+ ++++|.+.|.+|+++|.++|+++||+|.|||||||||||++
T Consensus 211 ~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~--l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l 288 (345)
T 4bbr_M 211 KNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG--LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILL 288 (345)
T ss_dssp HHCC----------------------------------------------------------------------------
T ss_pred HHHhCccccccccccccccCCCCCHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHH
Confidence 99999752110 0224899999999999999 78999999999999999999999999999999999999999
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHH
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDF 194 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef 194 (490)
+|+++|+++|++++|||++|||+||+||.+.. ..|.+.+|
T Consensus 289 ~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~-~~l~~~~~ 328 (345)
T 4bbr_M 289 FQIPITAAKVGQTLQVTEGTIKSGYKILYEHR-DKLVDPQL 328 (345)
T ss_dssp -----------------------------------------
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhcCHHH
Confidence 99999999999999999999999999998765 55555555
No 2
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=4.7e-39 Score=305.68 Aligned_cols=176 Identities=28% Similarity=0.483 Sum_probs=169.1
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|+++|++|+|| ++++++|..||++++++++++||++..|+|||||+|||+++.|++++||++++++++++|+++|+.|
T Consensus 16 I~~~~~~L~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~~l 93 (200)
T 1ais_B 16 LDRITAQLKLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFI 93 (200)
T ss_dssp HHHHHHHHTCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCH
Q 011262 81 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 160 (490)
Q Consensus 81 ~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~ 160 (490)
.+.|+++.+++ .++|..||+|||+.|+ +++++.+.|.+|++.+.++|++.||+|.+|||||||+||+++|+++|+
T Consensus 94 ~~~L~~~~~~~---~~~p~~~i~r~~~~L~--l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~ 168 (200)
T 1ais_B 94 ARNLNLTPKKL---FVKPTDYVNKFADELG--LSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQ 168 (200)
T ss_dssp HHHTTCCTTTT---CCCGGGGHHHHHHHHT--CCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhcccCCcC---CCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCH
Confidence 99999876531 2799999999999999 789999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhccCHHHHHHHHHHHhc
Q 011262 161 SDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 161 ~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
++|+.++||++.||++||++|.+
T Consensus 169 ~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 169 REVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999964
No 3
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-40 Score=338.12 Aligned_cols=186 Identities=14% Similarity=0.228 Sum_probs=81.6
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|+++|++|+|| ++++++|..||+++++.++++||+...|+|||||+|||++++|+||+||++++++++++|+++|+.|
T Consensus 133 I~~~~~~L~Lp--~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~~~l 210 (345)
T 3k7a_M 133 ITMLCDAAELP--KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIM 210 (345)
T ss_dssp HHHHHHHTTCC--HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc------------ccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHH
Q 011262 81 CQVLY------------IADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALY 148 (490)
Q Consensus 81 ~~~L~------------i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALy 148 (490)
.+.|+ +..++ ++|..||+|||+.|+ ++++|.+.|++|++.+.++|++.||+|.+|||||||
T Consensus 211 ~~~L~~~~~~~~~~~~~~~~~~-----~~p~~~i~Rf~~~L~--l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIy 283 (345)
T 3k7a_M 211 KNILRGKSEDGFLKIDTDNMSG-----AQNLTYIPRFCSHLG--LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIY 283 (345)
T ss_dssp HHHHTCC-------------------------------------------------------------------------
T ss_pred HHHHhhhhccccccccccccCC-----CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHH
Confidence 99998 54444 899999999999999 789999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 011262 149 VSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMA 196 (490)
Q Consensus 149 lAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~ 196 (490)
||++++|+++|+++|++++|||++||++||+||.+.. ..|++++|..
T Consensus 284 lAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~-~~l~~~~~~~ 330 (345)
T 3k7a_M 284 LNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHR-DKLVDPQLIA 330 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH-HhhCCHHHhh
Confidence 9999999999999999999999999999999998776 6888888873
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=1.6e-36 Score=289.98 Aligned_cols=185 Identities=21% Similarity=0.342 Sum_probs=173.9
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|+++|..|+|| +.++++|..||++++.++.++|+++..|+|||||+|||.+++|++++||+.++++++++|+++|+.|
T Consensus 12 I~~~~~~L~L~--~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~~~~~l 89 (207)
T 1c9b_A 12 ITTMADRINLP--RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLI 89 (207)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCH
Q 011262 81 CQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSK 160 (490)
Q Consensus 81 ~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~ 160 (490)
.+.|+++.++ .+|..||.||++.|+ ++.++.+.|..|++.+.+.|++.||+|++|||||||+|++++|.++|+
T Consensus 90 l~~L~~~l~~-----~~p~~~l~r~~~~l~--l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~ 162 (207)
T 1c9b_A 90 LKALETSVDL-----ITTGDFMSRFCSNLC--LPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQ 162 (207)
T ss_dssp HHHTTCCCCC-----CCTHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHCCCcCc-----CCHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCH
Confidence 9999998765 899999999999999 789999999999999999999999999999999999999999999999
Q ss_pred hhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 011262 161 SDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFM 195 (490)
Q Consensus 161 ~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~ 195 (490)
++|+.++||++.||+++|++|.+.- +.+.++||.
T Consensus 163 ~~i~~~~~v~~~tI~~~~~~l~~~l-~~~~p~~~~ 196 (207)
T 1c9b_A 163 KEIGDIAGVADVTIRQSYRLIYPRA-PDLFPTDFK 196 (207)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHGGGH-HHHSCSSCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH-HHhChHHHc
Confidence 9999999999999999999997542 333355553
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.90 E-value=2.9e-23 Score=201.98 Aligned_cols=174 Identities=14% Similarity=0.141 Sum_probs=158.5
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHHHHHhcCCCcCHHHHHHHh--------CcCHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKG-RRTEQVQASCLYLACRQKSKPFLLIDFSNYL--------NINVY 71 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rG-R~~~~VaAACLYiACR~~~~prtL~DIa~v~--------~vsv~ 71 (490)
|.+++..|+|| +.++.+|..||++++..+.++| +++..|++||||+|||.++.|+++.||+.++ .++..
T Consensus 35 i~~v~~~l~L~--~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~~ 112 (235)
T 1zp2_A 35 VQTFGDRLRLR--QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRS 112 (235)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccHH
Confidence 56899999999 9999999999999999998888 9999999999999999999999999999886 57899
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHH
Q 011262 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSA 151 (490)
Q Consensus 72 ~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAa 151 (490)
+|+++++.|.+.|+++..+ .+|..||.||++.++ .+.++...|..+++.+..+++..|++|++||+||||+|+
T Consensus 113 ~I~~~E~~iL~~L~f~l~~-----~~P~~~l~~~~~~~~--~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~ 185 (235)
T 1zp2_A 113 NISEIEFEIISVLDAFLIV-----HHPYTSLEQAFHDGI--INQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISC 185 (235)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCTHHHHHHHHHTTS--SCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcEEe-----cChHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHH
Confidence 9999999999999998765 899999999999987 789999999999999999999999999999999999999
Q ss_pred HhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 152 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 152 r~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+++|.+.+ .+.....+|++.+|+.++++|.+.
T Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~l 217 (235)
T 1zp2_A 186 CNDENTIP-KLLDLIKSTDAFKVILCVQRIISI 217 (235)
T ss_dssp TSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHH
Confidence 99987643 234444499999999999999643
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.84 E-value=6e-20 Score=180.43 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=154.9
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCc------------
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------------ 68 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~v------------ 68 (490)
|.+++..|+|| +.+..+|..||++....+.+++++...|++||||+|||.++.|+++.||..+++.
T Consensus 48 i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~ 125 (258)
T 2i53_A 48 IFDVGTRLGLH--YDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGD 125 (258)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCS
T ss_pred HHHHHHHcCCC--hHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhhhhhh
Confidence 46789999999 9999999999999999999999999999999999999999999999999976431
Q ss_pred -CHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcH----HHHHHHHHHHHHhhccccccCCChhHHH
Q 011262 69 -NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK----KVCDTARDILASMKRDWITTGRKPSGLC 143 (490)
Q Consensus 69 -sv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~----~V~~~A~~Iv~~~~~~~l~~GR~PsgIa 143 (490)
+..+|.+..+.|.+.|+.+..+ .+|..||.+|+..|+ .+. .+...|..+++.+..+++..|.+|+.||
T Consensus 126 ~~~~~i~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IA 198 (258)
T 2i53_A 126 DPKEEVMVLERILLQTIKFDLQV-----EHPYQFLLKYAKQLK--GDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIA 198 (258)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHTBC--SCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCceec-----cChHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHHHHcCCchhccChHHHH
Confidence 2568999999999999998765 789999999999998 344 7899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHH-------hH--hccCHHHHHHHHHHHhcC
Q 011262 144 GAALYVSALTHGLKFSKSDIV-------KI--VHICEATLMKRLIEFENT 184 (490)
Q Consensus 144 aAALylAar~~g~~~t~~dIa-------~v--~~Vse~TIrkR~kE~~~t 184 (490)
+||||+|++++|.+++..+.. .. .+|++.+|+.++++|.+.
T Consensus 199 aAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~l 248 (258)
T 2i53_A 199 VAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDL 248 (258)
T ss_dssp HHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999887654321 33 499999999999999654
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.82 E-value=3.4e-19 Score=175.24 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=154.1
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhC-----------cC
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLN-----------IN 69 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~-----------vs 69 (490)
|.+++..|+|| +.+..+|..||++.+..+.+++++...|++||||+||+.++.|+++.||..++. ++
T Consensus 38 i~~v~~~l~l~--~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~ 115 (257)
T 2ivx_A 38 IQEMGQRLNVS--QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTK 115 (257)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTT
T ss_pred HHHHHHHcCCc--HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCCCCcc
Confidence 46789999999 999999999999999999999999999999999999999999999999987753 11
Q ss_pred -------HHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhh-ccccccCCChhH
Q 011262 70 -------VYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK-RDWITTGRKPSG 141 (490)
Q Consensus 70 -------v~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~-~~~l~~GR~Psg 141 (490)
..+|.+..+.|.+.|+.+..+ .+|..|+.+|+..++ .+.++...|..++.... ...+..|.+|+.
T Consensus 116 ~~~y~~~~~~I~~~E~~iL~~L~f~l~~-----~~P~~fl~~~~~~l~--~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~ 188 (257)
T 2ivx_A 116 CDAYLQQTRELVILETIMLQTLGFEITI-----EHPHTDVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFCLQYKPTV 188 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCGGGTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccceEe-----eCcHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhcccHHHcCCHHH
Confidence 678999999999999998765 789999999999998 67899999999998765 456678999999
Q ss_pred HHHHHHHHHHHhcCCCCCHh----hHHhHh--ccCHHHHHHHHHHHhcC
Q 011262 142 LCGAALYVSALTHGLKFSKS----DIVKIV--HICEATLMKRLIEFENT 184 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~----dIa~v~--~Vse~TIrkR~kE~~~t 184 (490)
||+||||+|++++|.++++. .+...+ +|++.+|+.++++|.+.
T Consensus 189 IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 189 IACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887653 355543 79999999999999654
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.80 E-value=6.7e-19 Score=174.75 Aligned_cols=173 Identities=11% Similarity=0.098 Sum_probs=161.0
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CcCHHHHHHHhC--cCHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYELGAVY 77 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~-prtL~DIa~v~~--vsv~~Lgr~y 77 (490)
|.+++..++++ ..+.-.|..++++......+.+++...+++||||+|||.++. |.++.||..+++ .+..+|.+..
T Consensus 45 l~~v~~~~~l~--~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 45 LVQVQMKFRLL--QETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHH
Confidence 35688999999 999999999999999999899999999999999999999877 899999999985 7999999999
Q ss_pred HHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCC
Q 011262 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLK 157 (490)
Q Consensus 78 k~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~ 157 (490)
+.|.+.|+.+..+ ++|..|+.||+..++ .+.++...|..|++....+..+.|.+|+.||+||||+|+++.|.+
T Consensus 123 ~~IL~~L~f~l~~-----~tp~~fl~~~~~~~~--~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 123 MKILRALNFGLGR-----PLPLHFLRRASKIGE--VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHTTSCCCC-----CCHHHHHHHHHHSSC--CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCccCC-----CCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 9999999988765 789999999999887 678899999999999988888899999999999999999999988
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...+++...+|+++.+|+.+++++.
T Consensus 196 ~w~~~l~~~tg~~~~~l~~~~~~l~ 220 (269)
T 2b9r_A 196 EWTPTLQHYLSYTEESLLPVMQHLA 220 (269)
T ss_dssp CSCTTHHHHSCCCSSTTTTHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 8899999999999999999999985
No 9
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=173.66 Aligned_cols=173 Identities=10% Similarity=0.078 Sum_probs=156.8
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCc-CHHHHHHHhC------------
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPF-LLIDFSNYLN------------ 67 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~pr-tL~DIa~v~~------------ 67 (490)
|.+++..|+|| +.+..+|..||++.+..+.+++++...|++||||+||+.+++|+ ++.||..++.
T Consensus 50 I~~v~~~l~L~--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~ 127 (285)
T 3rgf_B 50 IQALGEHLKLR--QQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFP 127 (285)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCc
Confidence 46899999999 99999999999999999999999999999999999999999988 7889877642
Q ss_pred ----cCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHH
Q 011262 68 ----INVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLC 143 (490)
Q Consensus 68 ----vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIa 143 (490)
....+|.+..+.|.+.|+++... .+|..||.+|+..|+ .+..+...|..+++.+....+..|..|+.||
T Consensus 128 ~~~~~~~~~Il~~E~~iL~~L~f~l~v-----~~P~~fL~~~~~~l~--~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IA 200 (285)
T 3rgf_B 128 KEFPYRMNHILECEFYLLELMDCCLIV-----YHPYRPLLQYVQDMG--QEDMLLPLAWRIVNDTYRTDLCLLYPPFMIA 200 (285)
T ss_dssp SCCCCCHHHHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSHHHHSCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCeEe-----CChHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHccChhhccCHHHHH
Confidence 36689999999999999998765 789999999999998 6889999999999999888888999999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 144 GAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 144 aAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+||||+|+++.|.+. ...-..++|++..|...+++|.+.
T Consensus 201 aAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~l 239 (285)
T 3rgf_B 201 LACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKL 239 (285)
T ss_dssp HHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999998765 567888999999999999998643
No 10
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.77 E-value=3.7e-18 Score=168.48 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=156.9
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CcCHHHHHHHhC--cCHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYELGAVY 77 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~-prtL~DIa~v~~--vsv~~Lgr~y 77 (490)
|.+++..++++ ..+.-.|..++.+.....-+..++...+++||||+||+.++. |.++.||..+++ .+..+|.+..
T Consensus 46 l~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 46 LVEVGEEYKLQ--NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHH
Confidence 34688999999 999999999999999987778788999999999999999988 999999999884 7899999999
Q ss_pred HHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhhcccc-ccCCChhHHHHHHHHHHHHhcCC
Q 011262 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWI-TTGRKPSGLCGAALYVSALTHGL 156 (490)
Q Consensus 78 k~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l-~~GR~PsgIaaAALylAar~~g~ 156 (490)
+.|.+.|+.+..+ ++|..|+.+|+..++.+ .+.+...|..+++....+.. ..|.+|+.||+||||+|+++.|.
T Consensus 124 ~~iL~~L~~~l~~-----~tp~~fl~~~~~~l~~~-~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~ 197 (260)
T 2cch_B 124 HLVLKVLTFDLAA-----PTVNQFLTQYFLHQQPA-NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG 197 (260)
T ss_dssp HHHHHHTTTCCCC-----CCHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCccCC-----CCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC
Confidence 9999999988765 78999999999999831 24888999999998665554 78999999999999999999988
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+....++..++|+++.+|+.+++++.+
T Consensus 198 ~~w~~~l~~~~g~~~~~i~~~~~~l~~ 224 (260)
T 2cch_B 198 QSWPESLIRKTGYTLESLKPCLMDLHQ 224 (260)
T ss_dssp CCSCHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHhCcCHHHHHHHHHHHHH
Confidence 888899999999999999999999954
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.75 E-value=2.7e-18 Score=177.27 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=153.0
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCc------------
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNI------------ 68 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~v------------ 68 (490)
|.+++..|+|| +.++.+|..||++++..+.+++++...|++||||+||+.+..|+++.||..++..
T Consensus 45 I~ev~~~l~L~--~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~~ 122 (358)
T 2pk2_A 45 LQDMGQRLNVS--QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTR 122 (358)
T ss_dssp HHHHHTTTTCC--HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCTT
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccccccc
Confidence 46789999999 9999999999999999999999999999999999999999999999999876521
Q ss_pred ------CHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHHHHHHHHHhh-ccccccCCChhH
Q 011262 69 ------NVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDTARDILASMK-RDWITTGRKPSG 141 (490)
Q Consensus 69 ------sv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~-~~~l~~GR~Psg 141 (490)
...+|.+..+.|++.|+++..+ .+|..||.+|+..|+ .+.++...|..++.... ...+..+..|+.
T Consensus 123 ~~~y~~~~~~Il~~E~~IL~~L~f~L~v-----~~P~~fL~~~~~~l~--~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~ 195 (358)
T 2pk2_A 123 SEAYLQQVQDLVILESIILQTLGFELTI-----DHPHTHVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFSLQYTPPV 195 (358)
T ss_dssp SHHHHGGGTGGGTHHHHHHHHTTTCCCC-----CCTTHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCGGGTSCHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHcCCceeC-----CCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcchhccCHHH
Confidence 1567889999999999998765 789999999999998 67899999999998766 345567899999
Q ss_pred HHHHHHHHHHHhcCCCCCHh----hHHhH--hccCHHHHHHHHHHHhcCC
Q 011262 142 LCGAALYVSALTHGLKFSKS----DIVKI--VHICEATLMKRLIEFENTD 185 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~----dIa~v--~~Vse~TIrkR~kE~~~t~ 185 (490)
||+||||+|+++++.++++. .+..+ ++|++.+|+.++++|.+..
T Consensus 196 IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 196 VACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp HTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999877653 35555 3789999999999996544
No 12
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.75 E-value=1.7e-17 Score=164.61 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=151.0
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CcCHHHHHHHhC--cCHHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYELGAVYL 78 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~-prtL~DIa~v~~--vsv~~Lgr~yk 78 (490)
.+++..++++ ..+.-.|..++.+.....-+.+++...+++||||+||+.++. |+++.||+.+++ .+..+|.+..+
T Consensus 65 ~~v~~~~~l~--~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~ 142 (271)
T 2w96_A 65 LEVCEEQKCE--EEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMEL 142 (271)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHCCc--hhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 4678899999 899999999999999998888899999999999999999888 999999998864 79999999999
Q ss_pred HHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHH----HHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhc
Q 011262 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV----CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 154 (490)
Q Consensus 79 ~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V----~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~ 154 (490)
.|.+.|+.+..+ ++|..|+.+|+..|+ .+.++ ...|..++..+..+..+.|.+|+.||+||||+|++..
T Consensus 143 ~IL~~L~~~l~~-----~tp~~fl~~~~~~l~--~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 143 LLVNKLKWNLAA-----MTPHDFIEHFLSKMP--EAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHTTTCCCC-----CCHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 999999988765 789999999999998 45443 3567778777666666678999999999999999877
Q ss_pred CC---------CCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GL---------KFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~---------~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|. ..+++.++.++||++.+|+.+++++.+
T Consensus 216 ~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~ 253 (271)
T 2w96_A 216 NLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEA 253 (271)
T ss_dssp HHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 53 124678999999999999999999964
No 13
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.71 E-value=1.4e-16 Score=162.16 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=136.5
Q ss_pred CHHHHHhcC--CCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcC-------HH
Q 011262 1 MRQMKNALN--IGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNIN-------VY 71 (490)
Q Consensus 1 I~~ia~~L~--Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vs-------v~ 71 (490)
|.++|..|+ || +.++.+|..||++.+..+.+++.++..|++||||+||+.+++|+++.||..++..+ ..
T Consensus 64 I~ev~~~l~~~Lp--~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~ 141 (323)
T 1jkw_A 64 LLEFCSVFKPAMP--RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALE 141 (323)
T ss_dssp HHHHHHHCTTTCC--HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCC--HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHH
Confidence 568999999 99 99999999999999999999999999999999999999999999999998877655 47
Q ss_pred HHHHHHHHHHHHhcccccccccccCCccchHHHHHhhh-----CCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHH
Q 011262 72 ELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRL-----LPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAA 146 (490)
Q Consensus 72 ~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L-----~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAA 146 (490)
+|.+....|.+.|+++..+ .+|..||.+|+..| +...+..+...|..+++.+....+..+..|+.||+||
T Consensus 142 ~Il~~E~~iL~~L~f~l~v-----~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAa 216 (323)
T 1jkw_A 142 QILEYELLLIQQLNFHLIV-----HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTA 216 (323)
T ss_dssp HHHHHHHHHHHHTTTCCCC-----CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcEEc-----CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHH
Confidence 8999999999999998765 78999999999876 2224567889999999998887778899999999999
Q ss_pred HHHHHHhcCCCCC
Q 011262 147 LYVSALTHGLKFS 159 (490)
Q Consensus 147 LylAar~~g~~~t 159 (490)
||+|++++|.+++
T Consensus 217 i~lA~~~~~~~~~ 229 (323)
T 1jkw_A 217 ILSSASRAGITME 229 (323)
T ss_dssp HHHHHHHHSCCCT
T ss_pred HHHHHHHcCCChH
Confidence 9999999998765
No 14
>1ngm_B Transcription factor IIIB BRF1 subunit; TFIIIB, TBP, TAF, protein-DNA complex, transcription/DNA complex; 2.95A {Saccharomyces cerevisiae} SCOP: j.104.1.1
Probab=99.71 E-value=2e-18 Score=136.96 Aligned_cols=53 Identities=38% Similarity=0.590 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCChHHHhhcCCCHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 011262 331 TTEASDGSDNFSDIDDFEVDGYLHNEEEKHYKKIIWEEMNREYLEEQAAKEAA 383 (490)
Q Consensus 331 ~~~~~~~~~~lsdiDD~Eid~~il~eeE~~~K~~iW~~~N~dyl~eq~~Ke~~ 383 (490)
.++.++++++|||+||+|||+|||||+||++|++||+++|+|||++|++|+++
T Consensus 18 l~~~~dd~~~lsDiDD~Eid~yiLteeEv~~K~~iW~~~N~dyL~eq~~K~~k 70 (72)
T 1ngm_B 18 LSKVSDDPDNLEDVDDEELNAHLLNEEASKLKERIWIGLNADFLLEQESKRLK 70 (72)
T ss_dssp HTTSCCCSSCCTTSCCSSGGGSSCCHHHHHHHHHHHHHHTTTHHHHHHHTTTT
T ss_pred HHhccCCccccccCCHHHHHHhhCCHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34566889999999999999999999999999999999999999999999864
No 15
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.69 E-value=3.9e-16 Score=153.68 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=152.0
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CcCHHHHHHHhC--cCHHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYELGAVYL 78 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~-prtL~DIa~v~~--vsv~~Lgr~yk 78 (490)
.+++..++++ ..+.-.|..|+.+....+.++++....+++|||||||+.+.. |.++.||..+++ .+..+|.+..+
T Consensus 59 ~ev~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~ 136 (257)
T 1g3n_C 59 FSVCQEYNLE--PNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEK 136 (257)
T ss_dssp HHHHHHTTCC--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHH
T ss_pred HHHHHHhCCC--ccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHH
Confidence 4688999999 999999999999999999899999999999999999998664 999999999875 78999999999
Q ss_pred HHHHHhcccccccccccCCccchHHHHHhhhCCC--CcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCC
Q 011262 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG--GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL 156 (490)
Q Consensus 79 ~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~--l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~ 156 (490)
.|.+.|+.+..+ +.|..|+.+|+..++.+ ....+...|..+++....+..+.+.+|+.||+||||+|.+..|.
T Consensus 137 ~iL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~ 211 (257)
T 1g3n_C 137 ELLEKLAWRTEA-----VLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVI 211 (257)
T ss_dssp HHHHHTTTCCCC-----CCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGS
T ss_pred HHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCC
Confidence 999999988765 78999999999999721 11234567888888777777778999999999999999998875
Q ss_pred ------CCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 157 ------KFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 157 ------~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+.....++.++|+++.+|+.+++.+.+
T Consensus 212 ~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 212 PQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp CC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345788999999999999999999853
No 16
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.69 E-value=7.9e-16 Score=151.24 Aligned_cols=175 Identities=11% Similarity=0.144 Sum_probs=150.9
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcC-CCcCHHHHHHHhC--cCHHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYELGAVYL 78 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~-~prtL~DIa~v~~--vsv~~Lgr~yk 78 (490)
-+++..++++ ..+.-.|..|+.+....+.++++....+++|||||||+.+. .|.++.||..+++ .+..+|.+..+
T Consensus 60 ~~v~~~~~l~--~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~ 137 (254)
T 2f2c_A 60 HLLCESFELD--KSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEK 137 (254)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHH
T ss_pred HHHHHHHCCC--chHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 4678899999 99999999999999999999999999999999999999965 6999999987754 68999999999
Q ss_pred HHHHHhcccccccccccCCccchHHHHHhhhCCCC-c-HHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcC-
Q 011262 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG-N-KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG- 155 (490)
Q Consensus 79 ~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l-~-~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g- 155 (490)
.|.+.|+.+..+ +.|..|+.+|+..++.+. . ..+...|..++.....+....+.+|+.||+||||+|.+..+
T Consensus 138 ~IL~~L~~~l~~-----~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~ 212 (254)
T 2f2c_A 138 DILEALKWDTEA-----VLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNT 212 (254)
T ss_dssp HHHHHTTTCCCC-----CCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCcCCC-----CCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCC
Confidence 999999988765 789999999999997211 1 22456788888877777777899999999999999999863
Q ss_pred CCCC----HhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFS----KSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t----~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.+.+ +..++.++|+++.+|+.+++.+.+
T Consensus 213 ~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~ 244 (254)
T 2f2c_A 213 NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSE 244 (254)
T ss_dssp SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 789999999999999999999854
No 17
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.63 E-value=6.4e-15 Score=147.24 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=142.5
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHhcCC-CcCHHHHHHHhC--cCHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVAR-NFTKGRRTEQVQASCLYLACRQKSK-PFLLIDFSNYLN--INVYELGAV 76 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~-~~~rGR~~~~VaAACLYiACR~~~~-prtL~DIa~v~~--vsv~~Lgr~ 76 (490)
|.+++..++++ ..+.-.|..++.+.... +.++++....+++||||+||+.++. |.++.||..+++ .+..+|.+.
T Consensus 57 l~~v~~~~~l~--~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 57 LMEVCEVYKLH--RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHTTCB--HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHhCCC--ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 34688899999 99999999999999986 6788899999999999999999876 999999999874 789999999
Q ss_pred HHHHHHHhcccccccccccCCccchHHHHHhhhCCCC---------cHHHHHHHHHHHHHhhccccccCCChhHHHHHHH
Q 011262 77 YLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGG---------NKKVCDTARDILASMKRDWITTGRKPSGLCGAAL 147 (490)
Q Consensus 77 yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l---------~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAAL 147 (490)
.+.|.+.|+.+..+ +.|..|+.+|+..++... +......+..++.....+.-..|.+|+.||+|||
T Consensus 135 E~~IL~~L~~~l~~-----~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai 209 (283)
T 1w98_B 135 ELMIMKALKWRLSP-----LTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASAL 209 (283)
T ss_dssp HHHHHHHTTTCCCC-----CCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHH
T ss_pred HHHHHHHcCCcCCC-----CCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHH
Confidence 99999999988765 789999999999886211 1223334566776665555678999999999999
Q ss_pred HHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 148 YVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 148 ylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
|+|+ ..+.+..++|+++.+|+.+++.+.
T Consensus 210 ~la~-------~~~~l~~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 210 YHFS-------SSELMQKVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHTS-------CHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHH-------ChHHHHHHhCCCHHHHHHHHHHHH
Confidence 9985 278899999999999999999994
No 18
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.57 E-value=6.7e-14 Score=141.48 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=150.4
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhc-CCCcCHHHHHHHhC--cCHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFLLIDFSNYLN--INVYELGAVY 77 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~-~~prtL~DIa~v~~--vsv~~Lgr~y 77 (490)
|.+++..++|+ ..+.-.|..||.+......+++.....++++||||||+.+ ..|.++.||..+++ .+..+|.+..
T Consensus 78 l~ev~~~~~l~--~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 78 MLEVCEEQRCE--EEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHHHTTCC--TTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHhCCc--HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHH
Confidence 35788999999 9999999999999999988899999999999999999984 56889999998875 6889999999
Q ss_pred HHHHHHhcccccccccccCCccchHHHHHhhhCCC--CcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcC
Q 011262 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPG--GNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHG 155 (490)
Q Consensus 78 k~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~--l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g 155 (490)
+.|.+.|+.+..+ +.|..||.+|+..|+.. ....+...|..++.....+..+.+.+|+.||+||||+|.+..+
T Consensus 156 ~~IL~~L~f~l~~-----~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 156 VLVLGKLKWDLAA-----VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp HHHHHHTTTCCCC-----CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCccCC-----CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 9999999988765 78999999999998721 1233667788888877777777899999999999999999988
Q ss_pred CCCC-----HhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFS-----KSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t-----~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.... ...+..++|+++.+|+.+++.|.+.
T Consensus 231 ~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 231 ACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp ---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5443 2577899999999999999999643
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.45 E-value=3e-13 Score=127.82 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=84.3
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|.++|+.|+++ ..+.+.|..+++.+...+++.||++..+||||||+|||.+|.|+++.||+.+++|+..+|++.|+.|
T Consensus 112 i~r~~~~L~l~--~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l 189 (200)
T 1ais_B 112 VNKFADELGLS--EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKEL 189 (200)
T ss_dssp HHHHHHHHTCC--HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 47899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccc
Q 011262 81 CQVLYIADES 90 (490)
Q Consensus 81 ~~~L~i~~~~ 90 (490)
.+.|++..+|
T Consensus 190 ~~~l~~~~~~ 199 (200)
T 1ais_B 190 VEKLKIKVPI 199 (200)
T ss_dssp HHHHTCCCCC
T ss_pred HHHcCCCCCC
Confidence 9999987543
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.22 E-value=3.5e-11 Score=114.26 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=82.9
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|.++++.|+++ ..+...|..++..+...++..||++..+||||||+|||..|.++++.+|+.+++|+..+|+++|+.|
T Consensus 106 l~r~~~~l~l~--~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l 183 (207)
T 1c9b_A 106 MSRFCSNLCLP--KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLI 183 (207)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 46899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccc
Q 011262 81 CQVLYIADE 89 (490)
Q Consensus 81 ~~~L~i~~~ 89 (490)
.+.++...|
T Consensus 184 ~~~l~~~~p 192 (207)
T 1c9b_A 184 YPRAPDLFP 192 (207)
T ss_dssp GGGHHHHSC
T ss_pred HHHHHHhCh
Confidence 999987553
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.96 E-value=6.4e-11 Score=121.58 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|.++|+.|+|+ ..+...|.+|.+.+.+.+++.||++..|||||||+||+.+|.++|++||+++++|+..+|.+.|+.|
T Consensus 239 i~Rf~s~L~l~--~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel 316 (345)
T 4bbr_M 239 IPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCc--HHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCCccchHHHHHhhh
Q 011262 81 CQVLYIADESNVLKQVDPSIFLHKFTDRL 109 (490)
Q Consensus 81 ~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L 109 (490)
...++.- + |..|+..+...+
T Consensus 317 ~~~~~~l--------~-~~~~~~~~~~~~ 336 (345)
T 4bbr_M 317 YEHRDKL--------V-DPQLIANGVVSL 336 (345)
T ss_dssp -----------------------------
T ss_pred HHHHHhh--------c-CHHHhhcccCch
Confidence 9998742 2 445666654333
No 22
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.91 E-value=4.1e-08 Score=96.50 Aligned_cols=170 Identities=9% Similarity=0.032 Sum_probs=135.9
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcC-CCcCHHHHHHHhC--cCHHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKS-KPFLLIDFSNYLN--INVYELGAVYL 78 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~-~prtL~DIa~v~~--vsv~~Lgr~yk 78 (490)
-+++..++++ ..+.-.|..++.+.....-+.......++++|+|||++.+. .|.++.++..+++ .+..+|.+.-+
T Consensus 57 ~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~ 134 (252)
T 1f5q_B 57 FCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEV 134 (252)
T ss_dssp HHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 4688999999 89999999999999988777777889999999999999754 5889999998874 68899999999
Q ss_pred HHHHHhcccccccccccCCccchHHHHHhhhCCCCcH----HHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhc
Q 011262 79 QLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNK----KVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTH 154 (490)
Q Consensus 79 ~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~----~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~ 154 (490)
.|.+.|+.+..+ +.|..|+.+|...++ .+. .+...|..++....-+.-..+-+|+-||+||++++. .
T Consensus 135 ~IL~~L~w~l~~-----pTp~~FL~~~l~~~~--~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l--~ 205 (252)
T 1f5q_B 135 KSLDTLSWVADR-----CLSTDLICYILHIMH--APREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM--N 205 (252)
T ss_dssp HHHHHTTTCCCC-----CCHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH--T
T ss_pred HHHHHCCCccCC-----CCHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh--c
Confidence 999999988765 789999999999987 333 345567777666655555567899999999965443 2
Q ss_pred CCCCC----HhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKFS----KSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~t----~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
+...+ ...+...+|++...|+..++.+.
T Consensus 206 ~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~ 237 (252)
T 1f5q_B 206 QKYDYYENRIDGVCKSLYITKEELHQCCDLVD 237 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 22222 34577788999999988887775
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.5e-09 Score=111.27 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
|.++|+.|+|+ ..+...|..|...+...+++-||++..|||||||+||+.+|.+++.++|+.+++|+..+|...|+.|
T Consensus 239 i~Rf~~~L~l~--~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel 316 (345)
T 3k7a_M 239 IPRFCSHLGLP--MQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKIL 316 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 011262 81 CQVLY 85 (490)
Q Consensus 81 ~~~L~ 85 (490)
...+.
T Consensus 317 ~~~~~ 321 (345)
T 3k7a_M 317 YEHRD 321 (345)
T ss_dssp -----
T ss_pred HHHHH
Confidence 98874
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.59 E-value=0.00027 Score=68.02 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=60.5
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccC-CChhHHHHHHHHHHHHhcCCCCCHhhHHhHh
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG-RKPSGLCGAALYVSALTHGLKFSKSDIVKIV 167 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~G-R~PsgIaaAALylAar~~g~~~t~~dIa~v~ 167 (490)
..+|.+++..|+ ++..+..+|..+++++.....+.| ++|..|++||||+||++.+.+++++||+.++
T Consensus 32 ~~~i~~v~~~l~--L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~ 99 (235)
T 1zp2_A 32 WKVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEA 99 (235)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHH
Confidence 357889999999 899999999999999877666677 9999999999999999999999999999876
No 25
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.96 E-value=0.0012 Score=64.35 Aligned_cols=83 Identities=8% Similarity=-0.034 Sum_probs=70.4
Q ss_pred HHHHHhcCCCCch-HHHHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHH
Q 011262 2 RQMKNALNIGESD-EIVHVAKRFYGIAVA-RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQ 79 (490)
Q Consensus 2 ~~ia~~L~Lp~~~-~v~d~A~~iyk~A~~-~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~ 79 (490)
.+++..++++ . .+...|..+...+.. .+..-|.++..+||||||+|++..+.|....+++.++|++..+|..+++.
T Consensus 144 ~~~~~~l~~~--~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~ 221 (260)
T 2cch_B 144 TQYFLHQQPA--NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMD 221 (260)
T ss_dssp HHHHTTCSSC--CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHcCCC--hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHHHHH
Confidence 5678888888 5 788888888888763 33256799999999999999998877888889999999999999999999
Q ss_pred HHHHhcc
Q 011262 80 LCQVLYI 86 (490)
Q Consensus 80 L~~~L~i 86 (490)
|...+..
T Consensus 222 l~~~~~~ 228 (260)
T 2cch_B 222 LHQTYLK 228 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9997753
No 26
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.89 E-value=0.00072 Score=66.45 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=72.2
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLC 81 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~ 81 (490)
.+++..++++ ..+...|..+...+......-|.++..+||||||+|++..|.+....+++.++|++..+|..+++.|.
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~ 220 (269)
T 2b9r_A 143 RRASKIGEVD--VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLA 220 (269)
T ss_dssp HHHHHSSCCC--HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHHHHHH
T ss_pred HHHHHhcCCC--HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence 5678888888 88889999999888876666789999999999999999988877778899999999999999999998
Q ss_pred HHhc
Q 011262 82 QVLY 85 (490)
Q Consensus 82 ~~L~ 85 (490)
+.+.
T Consensus 221 ~~~~ 224 (269)
T 2b9r_A 221 KNVV 224 (269)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.86 E-value=0.0032 Score=61.11 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=61.9
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhc
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 168 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~ 168 (490)
..+|.+++..|+ ++..+..+|..++++......+.+++|..|++||||+||+..+.++++++|+.+++
T Consensus 35 ~~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 35 ANLIQEMGQRLN--VSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 457888999999 89999999999999998777788999999999999999999999999999987764
No 28
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.85 E-value=0.0033 Score=60.91 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=61.4
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhc
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 168 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~ 168 (490)
..+|.+++..|+ ++..+..+|..++++......+.++.+..|++||||+||++.+.++++++|+.+++
T Consensus 45 ~~~i~~v~~~l~--l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 45 ARFIFDVGTRLG--LHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 357888999998 89999999999999988777788999999999999999999999999999998764
No 29
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.66 E-value=0.0065 Score=60.16 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=59.7
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCC-CHhhHHhHh
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKF-SKSDIVKIV 167 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~-t~~dIa~v~ 167 (490)
..+|.+++.+|+ ++..+..+|..+++++-....+.|+.|..|++||||+||+..+..+ ++.+|+.++
T Consensus 47 ~~~I~~v~~~l~--L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 47 TNVIQALGEHLK--LRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 457888999998 8999999999999998877788899999999999999999999886 688888765
No 30
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=96.64 E-value=0.0082 Score=60.63 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=60.7
Q ss_pred chHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccC
Q 011262 100 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC 170 (490)
Q Consensus 100 ~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vs 170 (490)
.+|.++|..|+..+++.+..+|..+++++-....+.+..|..|++||||+||.+.+.++++++|+.++...
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 35667777776226899999999999999887788899999999999999999999999999998876544
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.49 E-value=0.0099 Score=57.66 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCchHH----HHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhc-CCCcC----HHHHHHHhCcCHHH
Q 011262 2 RQMKNALNIGESDEI----VHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQK-SKPFL----LIDFSNYLNINVYE 72 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v----~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~-~~prt----L~DIa~v~~vsv~~ 72 (490)
.+++..++++ ... ...|..+...+.-....-+.++..+||||||+|++.. +.|.+ ..+++.++|++..+
T Consensus 157 ~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~ 234 (254)
T 2f2c_A 157 IPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNT 234 (254)
T ss_dssp HHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHH
Confidence 5677888887 443 4557777766654444567999999999999999986 45666 78999999999999
Q ss_pred HHHHHHHHHHHhc
Q 011262 73 LGAVYLQLCQVLY 85 (490)
Q Consensus 73 Lgr~yk~L~~~L~ 85 (490)
|..+++.|.+.+.
T Consensus 235 l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 235 VRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 32
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=96.46 E-value=0.0046 Score=63.44 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=61.5
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhc
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVH 168 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~ 168 (490)
..+|.+++..|+ ++..+..+|..+++++.....+.++.|.-|++|||||||++.+.++++++|+.+++
T Consensus 42 v~wI~ev~~~l~--L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 42 ANLLQDMGQRLN--VSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHTTTT--CCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 457888999998 89999999999999998777788999999999999999999999999999987664
No 33
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.12 E-value=0.033 Score=46.49 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=62.8
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCC------CCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHH
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVARNFTK------GRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELG 74 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~r------GR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lg 74 (490)
|+.||-+||++ .+++.|.+++...... +.. .-+.-..+||++|.+||.++..+.-.-+....++++..+.
T Consensus 6 v~dLcVqfgc~---e~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFSCI---EAVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHTCG---GGHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 57899999999 4888888887766532 221 1234578999999999999999999999999999998888
Q ss_pred HHHHHHHHHh
Q 011262 75 AVYLQLCQVL 84 (490)
Q Consensus 75 r~yk~L~~~L 84 (490)
+....+.+.+
T Consensus 82 ~l~~~~e~~~ 91 (95)
T 3m03_A 82 RLCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776643
No 34
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=96.06 E-value=0.056 Score=50.98 Aligned_cols=83 Identities=14% Similarity=0.277 Sum_probs=59.3
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNFTKGR---RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYL 78 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~~rGR---~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk 78 (490)
.++-.+-++| +.|.+.|..+.+..+...--+|. +...|+|||+.||..+.+.|+++.|+--. +-+..++--.-.
T Consensus 20 r~L~kKs~~~--eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~l-D~sL~Dvelrr~ 96 (260)
T 3h4c_A 20 RGLHKKAVLP--EPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCL-DSSLGDVELRRA 96 (260)
T ss_dssp HHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH-CTTCCCHHHHHH
T ss_pred HHHHhhccCc--HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHH-hhhhhHHHHHHH
Confidence 3455566899 99999999999998875444453 56899999999999999999999988543 222222222334
Q ss_pred HHHHHhccc
Q 011262 79 QLCQVLYIA 87 (490)
Q Consensus 79 ~L~~~L~i~ 87 (490)
.|++.+++.
T Consensus 97 Eiv~~l~l~ 105 (260)
T 3h4c_A 97 DIVRELHLE 105 (260)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHccCC
Confidence 566666654
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.93 E-value=0.011 Score=57.41 Aligned_cols=84 Identities=15% Similarity=0.042 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCc--hHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC------CcCHHHHHHHhCcCHHHH
Q 011262 2 RQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK------PFLLIDFSNYLNINVYEL 73 (490)
Q Consensus 2 ~~ia~~L~Lp~~--~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~------prtL~DIa~v~~vsv~~L 73 (490)
.+++..++++.. ..+...|..+...+.-....-+.++..+||||||+|++..+. +.....++.+++++..+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l 235 (257)
T 1g3n_C 156 SFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVL 235 (257)
T ss_dssp HHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHH
Confidence 467778888721 123456777777666544456799999999999999998774 456788999999999999
Q ss_pred HHHHHHHHHHhc
Q 011262 74 GAVYLQLCQVLY 85 (490)
Q Consensus 74 gr~yk~L~~~L~ 85 (490)
..+++.|...+.
T Consensus 236 ~~c~~~i~~l~~ 247 (257)
T 1g3n_C 236 QAAVEQILTSVS 247 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=95.85 E-value=0.027 Score=55.07 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=74.1
Q ss_pred chHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCC-CCCHhhHHhHhc--cCHHHHHH
Q 011262 100 IFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLMK 176 (490)
Q Consensus 100 ~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~-~~t~~dIa~v~~--Vse~TIrk 176 (490)
++|...+..++ ++..+..+|..+++++....-+.++.+..|++||||+||++.+. +.++++++.+++ .+...|.+
T Consensus 62 ~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 62 TWMLEVCEEQK--CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHHHTT--CCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHHHC--CchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHH
Confidence 45667777877 78889999999999988776677899999999999999999997 889999998764 67777766
Q ss_pred HHHHHhcCCC---CCCCHHHHHHh
Q 011262 177 RLIEFENTDS---GSLTIEDFMAR 197 (490)
Q Consensus 177 R~kE~~~t~s---~~Lt~~ef~~~ 197 (490)
-...+..+-. ..-|+-.|...
T Consensus 140 mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 140 MELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCHHHHHHH
Confidence 6555544332 34456666554
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.00 E-value=0.079 Score=52.26 Aligned_cols=96 Identities=8% Similarity=0.029 Sum_probs=73.6
Q ss_pred chHHHHHhhhCCCCcHHHHHHHHHHHHHhhcc-ccccCCChhHHHHHHHHHHHHhcCC-CCCHhhHHhHhc--cCHHHHH
Q 011262 100 IFLHKFTDRLLPGGNKKVCDTARDILASMKRD-WITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVH--ICEATLM 175 (490)
Q Consensus 100 ~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~-~l~~GR~PsgIaaAALylAar~~g~-~~t~~dIa~v~~--Vse~TIr 175 (490)
++|...+..++ +..++..+|..+++++... ..+.++.+..+++||||+||++.+. ..+.++++.+++ .+...|.
T Consensus 55 ~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~ 132 (283)
T 1w98_B 55 DWLMEVCEVYK--LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEIL 132 (283)
T ss_dssp HHHHHHHHHTT--CBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHH
T ss_pred HHHHHHHHHhC--CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHH
Confidence 46777888888 8999999999999998765 4567899999999999999999876 678999988773 6677776
Q ss_pred HHHHHHhcCC---CCCCCHHHHHHh
Q 011262 176 KRLIEFENTD---SGSLTIEDFMAR 197 (490)
Q Consensus 176 kR~kE~~~t~---s~~Lt~~ef~~~ 197 (490)
+-...+..+- ..-.|+-.|...
T Consensus 133 ~mE~~IL~~L~~~l~~~tp~~fL~~ 157 (283)
T 1w98_B 133 TMELMIMKALKWRLSPLTIVSWLNV 157 (283)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCcCCCCCHHHHHHH
Confidence 6655554333 234456666554
No 38
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=94.96 E-value=0.073 Score=53.19 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=62.9
Q ss_pred HHHHHhcCCCCc--hHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhcCC-CcC----HHHHHHHhCcCHHHHH
Q 011262 2 RQMKNALNIGES--DEIVHVAKRFYGIAVARNFTKGRRTEQVQASCLYLACRQKSK-PFL----LIDFSNYLNINVYELG 74 (490)
Q Consensus 2 ~~ia~~L~Lp~~--~~v~d~A~~iyk~A~~~~~~rGR~~~~VaAACLYiACR~~~~-prt----L~DIa~v~~vsv~~Lg 74 (490)
..+...++++.. ..+...|..+...+.-....-+.++..+||||||+|++..+. |.. ...++.++|++..+|.
T Consensus 176 ~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~ 255 (306)
T 3g33_B 176 AFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLR 255 (306)
T ss_dssp HHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHH
Confidence 456677777621 124566777777666554455789999999999999998764 322 3677889999999999
Q ss_pred HHHHHHHHHhcc
Q 011262 75 AVYLQLCQVLYI 86 (490)
Q Consensus 75 r~yk~L~~~L~i 86 (490)
.++..|...+.-
T Consensus 256 ~c~~~I~~l~~~ 267 (306)
T 3g33_B 256 ACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 39
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=94.84 E-value=0.075 Score=53.31 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhC-C---CCCCCChHHHHHHHHHHHHHh-cCCCcCHHHHHHHhCcCHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVAR-N---FTKGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELG 74 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~-~---~~rGR~~~~VaAACLYiACR~-~~~prtL~DIa~v~~vsv~~Lg 74 (490)
..+|..|+|+ +.+.+.|..+|+..... + .+-|.. ...-.||||+||.. +|..++|-.|-..+++++.++-
T Consensus 7 ~~lC~~Lnld--~~~~~~Aw~~~~~~~~~~~~~~~~~~~~-~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff 81 (304)
T 2qdj_A 7 TALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKK-KELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFF 81 (304)
T ss_dssp HHHHHHTTCC--HHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHHHhccccccCCCccch-HHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHH
Confidence 4689999999 99999999999998885 2 344444 44455559999985 6889999999999999988773
No 40
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=94.18 E-value=0.052 Score=56.57 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=55.5
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~--~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~ 66 (490)
|+.+|..|+++. ..+......+|...+.+ .++++|..++++-+|+|+.||..+..++++||-...
T Consensus 286 l~~LC~~L~~~~-~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Y 352 (411)
T 4ell_A 286 LNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 352 (411)
T ss_dssp HHHHHHHHCTTS-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 468999999872 36778888888877654 689999999999999999999999999999998754
No 41
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=93.74 E-value=0.08 Score=54.01 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=55.5
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHh--CCCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVA--RNFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~--~~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~ 66 (490)
|+.+|..|+++. ..+......+|..+.. ..++++|..+++.-.|+|+.||..+...++++|-...
T Consensus 222 l~~LC~~L~~~~-~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Y 288 (347)
T 2r7g_A 222 LNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 288 (347)
T ss_dssp HHHHHHHHCTTC-TTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCc-hHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 468999999872 3678888888887775 3688999999999999999999999999999998754
No 42
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=92.76 E-value=0.15 Score=56.01 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=55.8
Q ss_pred CHHHHHhcCCCCchHHHHHHHHHHHHHHhC--CCCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Q 011262 1 MRQMKNALNIGESDEIVHVAKRFYGIAVAR--NFTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYL 66 (490)
Q Consensus 1 I~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~--~~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~ 66 (490)
|+.+|..|+++. ..+.+....+|.....+ .++++|..++++..|+|+.||..+...++++|-...
T Consensus 531 l~~LC~~L~~~~-~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 531 LNTLCERLLSEH-PELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHCTTC-THHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHhccCc-hHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 468999998773 47888888888877754 689999999999999999999999999999997753
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=91.15 E-value=0.98 Score=37.60 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=53.3
Q ss_pred HHHHHhhhCCCCcHHHHHHHHHHHHHhhccc------cccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHH
Q 011262 102 LHKFTDRLLPGGNKKVCDTARDILASMKRDW------ITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLM 175 (490)
Q Consensus 102 I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~------l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIr 175 (490)
|..+|-.|+ -.++...|.+|++..+..- -....+|. .++||+|.+|+.+..+++...+...+|++..-..
T Consensus 6 v~dLcVqfg---c~e~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 6 IRDLAVQFS---CIEAVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp HHHHHHHHT---CGGGHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhC---CHHHHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 455777777 3347777888888776431 11224564 6677999999999999999999988888776555
Q ss_pred HHHHHH
Q 011262 176 KRLIEF 181 (490)
Q Consensus 176 kR~kE~ 181 (490)
+-...+
T Consensus 82 ~l~~~~ 87 (95)
T 3m03_A 82 RLCKQL 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=89.23 E-value=1.3 Score=48.55 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=59.5
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCC----CCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARN----FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVY 77 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~----~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~y 77 (490)
..+|..|+|+ +.+.+.|.+.|......+ .+--....++.|+.+|.+|+.+|..++|-.|-..+++++.++ |
T Consensus 9 ~~lC~~Ln~d--~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F---F 83 (656)
T 4elj_A 9 TALCQKLKIP--DHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF---F 83 (656)
T ss_dssp HHHHHHTTCC--HHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH---H
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH---H
Confidence 4689999999 999999999999998532 222234567777777777878999999999999999998777 5
Q ss_pred HHHHH
Q 011262 78 LQLCQ 82 (490)
Q Consensus 78 k~L~~ 82 (490)
.+|.+
T Consensus 84 ~kikk 88 (656)
T 4elj_A 84 NLLKE 88 (656)
T ss_dssp HHHHH
T ss_pred HHhHh
Confidence 55555
No 45
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=88.13 E-value=0.25 Score=33.99 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=25.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
...|.++||+.+|||..||.+.++.+...
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 34789999999999999999999887543
No 46
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=87.44 E-value=10 Score=30.75 Aligned_cols=101 Identities=10% Similarity=0.133 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHH
Q 011262 41 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120 (490)
Q Consensus 41 VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~ 120 (490)
+..++-||.-.. ..+.++.++|..+++++..|.+.|+.. +| ..|..||.+.- ...
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~---~G----------~s~~~~~~~~R-----------l~~ 58 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS---RG----------YSPMAFAKRVR-----------LQH 58 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH---TS----------SCHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH---hC----------cCHHHHHHHHH-----------HHH
Confidence 445556665544 457999999999999999998876643 33 34666666541 112
Q ss_pred HHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 121 A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
|.+++. .+. ...++.+||..+|.+ .....+.++.+. .+||.+|++.
T Consensus 59 A~~lL~--------~~~------------------~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~ 105 (108)
T 3mn2_A 59 AHNLLS--------DGA------------------TPTTVTAAALSCGFSNLGHFARDYRDMF-----GEKPSETLQR 105 (108)
T ss_dssp HHHHHH--------SSS------------------SCCCHHHHHHHTTCCCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHH--------cCC------------------CCCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 222221 111 126788888888874 457777777763 4677777664
No 47
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.91 E-value=0.39 Score=38.34 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|.+.|++|||+.+|||..|||+-|+.+.+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999998853
No 48
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=86.65 E-value=3 Score=41.64 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=66.6
Q ss_pred HHHHHhhhCCCCcHHHHHHHHHHHHHhhc-cccccC--CChhHHHHHHHHHHHHh-cCCCCCHhhHHhHhccCHHHHHHH
Q 011262 102 LHKFTDRLLPGGNKKVCDTARDILASMKR-DWITTG--RKPSGLCGAALYVSALT-HGLKFSKSDIVKIVHICEATLMKR 177 (490)
Q Consensus 102 I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~-~~l~~G--R~PsgIaaAALylAar~-~g~~~t~~dIa~v~~Vse~TIrkR 177 (490)
...+|..|. ++..+...|+++.+.+.. +.+.+| -...-..+||||+|+.- .|..+|+..|-+.++++-..-=++
T Consensus 6 F~~lC~~Ln--ld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~k 83 (304)
T 2qdj_A 6 FTALCQKLK--IPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFNL 83 (304)
T ss_dssp HHHHHHHTT--CCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHHH
Confidence 345788888 899999999999999887 332111 23566677779999964 556689999999998887666555
Q ss_pred HHHHhcCCCCCCCHHHHHHhHHHhhhc
Q 011262 178 LIEFENTDSGSLTIEDFMARKKELHEG 204 (490)
Q Consensus 178 ~kE~~~t~s~~Lt~~ef~~~~~~le~e 204 (490)
++.. + ...+|.+..+.||..
T Consensus 84 ~~~~-----d--~~~~~~~~i~~Le~~ 103 (304)
T 2qdj_A 84 LKEI-----D--TSTKVDNAMSRLLKK 103 (304)
T ss_dssp HTTS-----C--CCHHHHHHHHHHHHH
T ss_pred HHHc-----C--CCHHHHHHHHHHHHH
Confidence 5552 2 567887776666665
No 49
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=84.35 E-value=15 Score=29.79 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 40 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 40 ~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
.+..+.-||--.... +.++.+||+.+++++..|.+.|+..
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455566676665544 8999999999999999998876654
No 50
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=81.25 E-value=0.52 Score=34.00 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
...|+.+||+.+|||..||++.++
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999999874
No 51
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=80.15 E-value=2.1 Score=34.25 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhccccc
Q 011262 44 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADE 89 (490)
Q Consensus 44 ACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~ 89 (490)
--|+-+.+..|.|....||+..+||+.++|.++++.|.+.-.|..|
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 3466778899999999999999999999999999999998877543
No 52
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=77.43 E-value=7.1 Score=35.39 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhC--cCHHHHHHHHHHHHHHhccccccc--------ccccCCc--cchHHHHHh
Q 011262 40 QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELGAVYLQLCQVLYIADESN--------VLKQVDP--SIFLHKFTD 107 (490)
Q Consensus 40 ~VaAACLYiACR~~~~prtL~DIa~v~~--vsv~~Lgr~yk~L~~~L~i~~~~~--------~~~~vdP--~~~I~Rf~s 107 (490)
.++=|.||.+ +-|.++.+++.+++ ++..++......|...+.-...+. +.-...| ..||.+|.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~- 84 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLL- 84 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHH-
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHh-
Confidence 4556777876 78999999999999 999999999999988764211110 0000111 12222221
Q ss_pred hhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHH-HHHHHhcCCCCCHhhHHhHhccC
Q 011262 108 RLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAAL-YVSALTHGLKFSKSDIVKIVHIC 170 (490)
Q Consensus 108 ~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAAL-ylAar~~g~~~t~~dIa~v~~Vs 170 (490)
..+.|..+--|++ -++.-.+..++|..+|+++.||+
T Consensus 85 ---------------------------~~~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~ 121 (162)
T 1t6s_A 85 ---------------------------APVIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS 121 (162)
T ss_dssp ---------------------------SCHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC
T ss_pred ---------------------------cccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC
Confidence 1122334555554 44555566899999999999998
No 53
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=77.02 E-value=2.4 Score=37.75 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCC
Q 011262 151 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185 (490)
Q Consensus 151 ar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~ 185 (490)
....+.+.|..+||+.+|+|+.|+++|++.+.+..
T Consensus 11 ~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 33446678999999999999999999999997554
No 54
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=75.27 E-value=6.5 Score=37.43 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 39 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 39 ~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
..++=|.||++ +-|.++.+++.+++++..++......|...+
T Consensus 17 ~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y 58 (219)
T 2z99_A 17 KRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADEL 58 (219)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35566778875 7899999999999999999999999998877
No 55
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=75.01 E-value=31 Score=34.15 Aligned_cols=100 Identities=5% Similarity=-0.026 Sum_probs=77.4
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhC--CCC-CCCChHHHHHHHHHHHHHh-cCCCcCHHHHHHHhCcCHHHHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVAR--NFT-KGRRTEQVQASCLYLACRQ-KSKPFLLIDFSNYLNINVYELGAVY 77 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~--~~~-rGR~~~~VaAACLYiACR~-~~~prtL~DIa~v~~vsv~~Lgr~y 77 (490)
.+|...-+++ ..+.-.|..|+.+.... ++. ...+...+..+||-+|.+- .....+-..+|.+.|+++.+|.+.-
T Consensus 82 ~RI~k~t~ls--~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE 159 (293)
T 2pmi_B 82 IRLTKFSSLE--HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILE 159 (293)
T ss_dssp HHHHHTTTCC--HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCC--HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHH
Confidence 4566666788 78888888777776652 343 3467788889999999985 6778899999999999999999999
Q ss_pred HHHHHHhcccccccccccCCccchHHHHHhhh
Q 011262 78 LQLCQVLYIADESNVLKQVDPSIFLHKFTDRL 109 (490)
Q Consensus 78 k~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L 109 (490)
+.++..|+.+.. ++++.|...+...+
T Consensus 160 ~eFL~lLdf~L~------V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 160 NDFLKRVNYRII------PRDHNITLCSIEQK 185 (293)
T ss_dssp HHHHHTTTTCCS------CCTTHHHHHHHHSC
T ss_pred HHHHHHcCCcee------eCHHHHHHHHHHHh
Confidence 999999988764 56777765444443
No 56
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=73.06 E-value=8.8 Score=36.24 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccC---CChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHH
Q 011262 102 LHKFTDRLLPGGNKKVCDTARDILASMKRDWITTG---RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 102 I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~G---R~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~ 178 (490)
|.++-.+-. +++.|...|..|++.+.-..--.| -+|..+||||+.+|+.-.+.+++..++- ...-+-..|.-|.
T Consensus 19 lr~L~kKs~--~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r-~lD~sL~Dvelrr 95 (260)
T 3h4c_A 19 MRGLHKKAV--LPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR-CLDSSLGDVELRR 95 (260)
T ss_dssp HHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH-HHCTTCCCHHHHH
T ss_pred HHHHHhhcc--CcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH-HHhhhhhHHHHHH
Confidence 444444444 789999999999998754322223 4799999999999999999999988753 2223333555555
Q ss_pred HHHh
Q 011262 179 IEFE 182 (490)
Q Consensus 179 kE~~ 182 (490)
-|+.
T Consensus 96 ~Eiv 99 (260)
T 3h4c_A 96 ADIV 99 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 57
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=72.41 E-value=3 Score=33.35 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|.+.|..+||+.+||+..||++++..|.+
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999999999964
No 58
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=72.37 E-value=5.7 Score=38.26 Aligned_cols=67 Identities=9% Similarity=0.097 Sum_probs=53.3
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCC-CCCHhhHHhHh
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGL-KFSKSDIVKIV 167 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~-~~t~~dIa~v~ 167 (490)
.++|-.++..++ +.+++.-.|..++.|.....-+......-++.+|+|||+.+... +.+..+++..+
T Consensus 53 vdWl~ev~~~~~--l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~ 120 (252)
T 1f5q_B 53 TTWMFCVCKDLR--QDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLC 120 (252)
T ss_dssp HHHHHHHHHHTT--CCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHh
Confidence 346777888888 78899999999999987655556678889999999999998774 46677776654
No 59
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.05 E-value=0.62 Score=32.41 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|+.+||+.+|||..||.+.++.+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 8999999999999999999887653
No 60
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=71.81 E-value=5.5 Score=29.13 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCCHhhHHhHh-----ccCHHHHHHHHHHHh
Q 011262 155 GLKFSKSDIVKIV-----HICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~t~~dIa~v~-----~Vse~TIrkR~kE~~ 182 (490)
+-..|..+|++.+ +||..||++-++++.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4579999999999 999999999999764
No 61
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=71.34 E-value=3.7 Score=37.05 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=27.6
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcCC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 185 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~ 185 (490)
+-+.|..+||+.+|+|+.|+++|++.+.+..
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999999997553
No 62
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=71.27 E-value=25 Score=35.63 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHhc----------CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhc-cc-------------------
Q 011262 38 TEQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQVLY-IA------------------- 87 (490)
Q Consensus 38 ~~~VaAACLYiACR~~----------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~-i~------------------- 87 (490)
..++.|.|+=++-..+ +..+++--|-++++++.+++.++.-.+++.-+ +.
T Consensus 104 h~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLesla 183 (347)
T 2r7g_A 104 HMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLA 183 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4567888887765543 23577778999999999999999888777521 00
Q ss_pred ---cccccc--ccCCc--------cch-----------HHHHHhhhCCCCcHHHHHHHHHHHHHhh--ccccccCCChhH
Q 011262 88 ---DESNVL--KQVDP--------SIF-----------LHKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSG 141 (490)
Q Consensus 88 ---~~~~~~--~~vdP--------~~~-----------I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~--~~~l~~GR~Psg 141 (490)
..+.+. ....+ ..| |..+|++|.. ..+++...++.+++.+. ...+..+|+-.-
T Consensus 184 W~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~-~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQ 262 (347)
T 2r7g_A 184 WLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQ 262 (347)
T ss_dssp GSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHCGGGGTTSCHHH
T ss_pred hccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHHhChHhhcCCcHHH
Confidence 000000 00001 111 4557777852 22345555666666544 356889999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHh
Q 011262 142 LCGAALYVSALTHGLKFSKSDIVK 165 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~dIa~ 165 (490)
|.-.|||+.|+.++..+|.++|..
T Consensus 263 iilCaiY~i~Kv~~~~~tF~~Ii~ 286 (347)
T 2r7g_A 263 IMMCSMYGICKVKNIDLKFKIIVT 286 (347)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999998888888876
No 63
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=71.01 E-value=4 Score=35.63 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999654
No 64
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=70.74 E-value=4.1 Score=35.54 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3457999999999999999999999999643
No 65
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.12 E-value=3.8 Score=32.27 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=25.5
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-+.|..+||+.+||+..||++++..+.+
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999853
No 66
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=70.01 E-value=4.3 Score=35.29 Aligned_cols=31 Identities=6% Similarity=0.292 Sum_probs=27.2
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3467999999999999999999999999643
No 67
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=69.99 E-value=4.7 Score=34.94 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=28.0
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcCC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENTD 185 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~ 185 (490)
.+-+.|..+|++.+|+|.+|++++++.+.+..
T Consensus 14 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 14 YNAKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34579999999999999999999999997543
No 68
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=69.31 E-value=4.6 Score=34.45 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-+.|..+|++.+|+|..|++++++.+.+.
T Consensus 15 ~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457899999999999999999999999643
No 69
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=69.22 E-value=6.2 Score=35.42 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 36 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 36 R~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
++...-+-+.+|+|.+..+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 24 ~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 24 TKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345566677889988666779999999999999999999999999874
No 70
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.13 E-value=4.5 Score=35.70 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+.+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999654
No 71
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.02 E-value=4.6 Score=34.94 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-+.|..+||+.+|+|..|++++++.+.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999654
No 72
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=69.01 E-value=11 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 41 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 41 VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
+..+.-||--....-+.++.+||+.+++++..|.+.|+..
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445556665555558999999999999999998876654
No 73
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=68.52 E-value=3.5 Score=29.94 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||+..|+|+.||++++..+.
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 456899999999999999999988774
No 74
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=68.35 E-value=3.6 Score=31.41 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.7
Q ss_pred CCHhhHHhHhccCHHHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.|++|||+.+|||..||.+-+..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999998863
No 75
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=68.01 E-value=5.8 Score=30.84 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=25.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-+.|..+||+.+||+..||++.++.+.+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999963
No 76
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=67.73 E-value=46 Score=31.20 Aligned_cols=36 Identities=6% Similarity=0.052 Sum_probs=27.5
Q ss_pred CCCHhhHHhHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 157 KFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 157 ~~t~~dIa~v~~V-se~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
..|+.+||..+|. +.+...+.+|... -+||.+|++.
T Consensus 233 ~~si~eIA~~~Gf~~~s~F~r~Fkk~~-----G~tP~~yR~~ 269 (276)
T 3gbg_A 233 EFKIKQIAYQSGFASVSYFSTVFKSTM-----NVAPSEYLFM 269 (276)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred CCCHHHHHHHhCCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 4688889998988 4567788887763 5788888876
No 77
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=67.44 E-value=5 Score=36.11 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.4
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-+.|..+||+.+|+|..|+++|++.+.+.
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457999999999999999999999999644
No 78
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=67.20 E-value=9.7 Score=30.93 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHH
Q 011262 41 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQL 80 (490)
Q Consensus 41 VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L 80 (490)
+..++-||--...+.+.++.++|+.++++...|.+.|+..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455666655444478999999999999999998876643
No 79
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=66.54 E-value=15 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57899999999999999999999999654
No 80
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=65.63 E-value=6.3 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||+..|+|..||+++++.+.
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345999999999999999999998864
No 81
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=65.45 E-value=6.1 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
...|.++||+..|||..||++++..+..
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4479999999999999999999887753
No 82
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=65.45 E-value=19 Score=28.84 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 145 AALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 145 AALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
+.-||-....+.+.++.+||+.+|+|+.++.+.+++.. .+|+.+|....
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----g~s~~~~~~~~ 55 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF-----GIPFQDYLLQK 55 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 34456655555689999999999999999999999984 46788887653
No 83
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=65.39 E-value=6.1 Score=34.31 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-+.|..+||+.+|+|..|++++++.+.+.
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999654
No 84
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=65.23 E-value=7.8 Score=28.94 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=24.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||+..|+|..||++++....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 469999999999999999999987764
No 85
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=65.08 E-value=4.9 Score=31.90 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.-.+++.|+++.++||+.|||+=+.++.
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3569999999999999999999888874
No 86
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=65.06 E-value=6.1 Score=30.01 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
++-+++..+||+.++|+..||.+.++.|.+.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567999999999999999999999999654
No 87
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=65.02 E-value=5.8 Score=39.12 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=28.4
Q ss_pred HhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 152 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 152 r~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+...+|+.+||+.++||+.|||+=++++++.
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345567999999999999999999999998654
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.22 E-value=7.5 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|+|..||++++....
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999999988764
No 89
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=63.14 E-value=7.3 Score=29.63 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=24.5
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
...|.++||...|+|..||++++..+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4579999999999999999999888753
No 90
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=62.84 E-value=7.4 Score=31.84 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.|.+.|..+||+.+|||.+||++.++.+.+
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 576799999999999999999999999853
No 91
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=62.71 E-value=20 Score=29.01 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 141 gIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
-|.-+.-||-..... ++++.+||+.+|+|..++.+.+++.. .+|+.+|....
T Consensus 6 ~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 57 (108)
T 3oou_A 6 IIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEM-----GEHFTDYLNRY 57 (108)
T ss_dssp HHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 344555566665544 89999999999999999999999884 46778886653
No 92
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=62.51 E-value=19 Score=29.05 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
|.-+.-||-....+.+.++.+||+.+|+|..++.+.++... .+|+.+|....
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 56 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL-----GISVLSWREDQ 56 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 34445566665555789999999999999999999999863 46778886653
No 93
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=62.32 E-value=7.8 Score=30.82 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||..+|||..||++++....
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457999999999999999999887764
No 94
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.99 E-value=7.7 Score=29.40 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=23.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
...|.++||...|+|..||++++...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999877654
No 95
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=61.98 E-value=7.5 Score=33.99 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 38 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 38 ~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
...-.-+.+|+|-...+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444556788887655679999999999999999999999999874
No 96
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=61.70 E-value=1.5e+02 Score=30.71 Aligned_cols=26 Identities=0% Similarity=-0.063 Sum_probs=22.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
...|+.+||...|||..|||+++..-
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RA 419 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKA 419 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999999776543
No 97
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=61.66 E-value=5.6 Score=32.07 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=24.1
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.|..+||+.+||+..||++++..+..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88999999999999999999999853
No 98
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=61.58 E-value=14 Score=31.24 Aligned_cols=43 Identities=16% Similarity=0.056 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 41 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 41 VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
...+.+|++-+..+.|.+..+||+.++++...+.+.+..|.+.
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444556654444779999999999999999999999998874
No 99
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=61.46 E-value=7 Score=31.08 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-..|+.+|++.+||+.+||++.++.+.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567999999999999999999999999543
No 100
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.13 E-value=17 Score=33.58 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+.|+.+||..+|+|..||.+-+++|.+-
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 357899999999999999999999999754
No 101
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=60.91 E-value=13 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999643
No 102
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=60.89 E-value=6.4 Score=31.16 Aligned_cols=27 Identities=0% Similarity=-0.027 Sum_probs=23.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|||..||++++....
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 679999999999999999998876654
No 103
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=60.38 E-value=15 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999754
No 104
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=60.29 E-value=9 Score=34.78 Aligned_cols=29 Identities=3% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+-..|..++|+.++||..||+++++.+.+
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44589999999999999999999999965
No 105
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=59.84 E-value=6.2 Score=33.03 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=24.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-..|+++||+.+|||.+||.+-=+.+...
T Consensus 57 ge~TQREIA~~lGiS~stISRi~r~L~~l 85 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRGSNSLKAA 85 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHCCChhhhhHHHHHHHHc
Confidence 45999999999999999999886666533
No 106
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=59.15 E-value=17 Score=32.71 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=26.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 57999999999999999999999999643
No 107
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=59.10 E-value=17 Score=30.58 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.3
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-..|+++||+.++|+.+||++.++.+.+-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 3567899999999999999999999999643
No 108
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=58.61 E-value=10 Score=32.05 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 146 ALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 146 ALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.||.+-..++-+ .|+.+|++.++++.+||.++++.|.+.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344443345555 899999999999999999999999643
No 109
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=58.30 E-value=10 Score=33.16 Aligned_cols=46 Identities=15% Similarity=-0.045 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 37 RTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 37 ~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
+...-.-+.+|++-+ .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344556677777763 5668999999999999999999999999883
No 110
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=58.29 E-value=30 Score=27.88 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
|.-+.-||.... ..+.|+.+||+.+|+|..++.+.+++.. .+|+.+|....
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~~-----G~s~~~~~~~~ 54 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRSR-----GYSPMAFAKRV 54 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHHh-----CcCHHHHHHHH
Confidence 334455665554 4569999999999999999999999873 46788887653
No 111
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=58.23 E-value=9.3 Score=30.46 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.-+.|..+|++.+|++.+||.+.++.+.+.
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQHLAWLRRD 63 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 356899999999999999999999999643
No 112
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=58.08 E-value=21 Score=32.35 Aligned_cols=29 Identities=10% Similarity=0.346 Sum_probs=26.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999999643
No 113
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.54 E-value=7.6 Score=31.34 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|||..||++++..+.
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446889999999999999999887764
No 114
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=57.52 E-value=9.5 Score=30.01 Aligned_cols=31 Identities=10% Similarity=0.197 Sum_probs=27.0
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-+.|+.+|++.+|++.+||.+.++.+.+.
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~~ 65 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRDE 65 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457899999999999999999999999643
No 115
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.44 E-value=6.8 Score=31.86 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=25.6
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+++.++++.++||+.|||+=+..+.+-
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 56899999999999999999999888533
No 116
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=57.32 E-value=4.2 Score=31.20 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred CCCHhhHHhHhccCHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
..|++|||+.+|||..||.+.+.
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999998664
No 117
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=56.01 E-value=20 Score=33.02 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHHHHHhc----------CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHH
Q 011262 36 RRTEQVQASCLYLACRQK----------SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 104 (490)
Q Consensus 36 R~~~~VaAACLYiACR~~----------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~R 104 (490)
++...-+|..|+.-+... ..|.|..|||+.+|++..++.|+.+.|.+.=-|..........|+..+-.+
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~L~~~ 241 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVTLSRQ 241 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC-------
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHHHHhh
Confidence 444555555555444432 357899999999999999999999999885323322222223566544333
No 118
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=55.94 E-value=11 Score=34.26 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.2
Q ss_pred HhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 152 LTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 152 r~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+|.+.|++|||+.+|++..|++++++.+.+-
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 357888999999999999999999999999643
No 119
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=55.62 E-value=10 Score=35.34 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.6
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
+....||.+||...|||..||.+.++.-
T Consensus 21 y~~g~tQ~eIA~~lGiSr~~VSR~L~~A 48 (192)
T 1zx4_A 21 KNDGMSQKDIAAKEGLSQAKVTRALQAA 48 (192)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHHHh
Confidence 3455999999999999999999998775
No 120
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=55.40 E-value=16 Score=28.82 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
|.|.|+.|||+.++++..++.+-...|.+.=-+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 789999999999999999999888888775433
No 121
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=55.16 E-value=7.7 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
...|.++||...|||..||++++..+..
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999999887753
No 122
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=55.05 E-value=22 Score=32.21 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.++.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 367889999999999999999999999755
No 123
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=54.79 E-value=7.3 Score=33.46 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=26.2
Q ss_pred cCCCC-CHhhHHhHhccCHHHHHHHHHHHh
Q 011262 154 HGLKF-SKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 154 ~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|.++ |.+++|+..|||..|||+.|+.+.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~ 63 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELE 63 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46777 789999999999999999999985
No 124
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=54.64 E-value=15 Score=30.63 Aligned_cols=31 Identities=0% Similarity=-0.151 Sum_probs=27.0
Q ss_pred HhcCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 152 LTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 152 r~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
..+-...||.+||...|||..||.+-++...
T Consensus 29 lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar 59 (101)
T 2w7n_A 29 GVLVDGKPQATFATSLGLTRGAVSQAVHRVW 59 (101)
T ss_dssp HHHTTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456779999999999999999999888876
No 125
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=54.54 E-value=15 Score=32.56 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 36899999999999999999999999754
No 126
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.49 E-value=9.2 Score=30.75 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||+.++||+.||++++..+.
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 446899999999999999999988874
No 127
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=54.34 E-value=11 Score=31.79 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.2
Q ss_pred hcCCCCCHhhHHhHh--ccCHHHHHHHHHHHhcC
Q 011262 153 THGLKFSKSDIVKIV--HICEATLMKRLIEFENT 184 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~--~Vse~TIrkR~kE~~~t 184 (490)
-+| +.|..+|++.+ ++|..+|++|++.+.+.
T Consensus 24 ~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 24 EEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp HHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred HcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 344 89999999999 99999999999999644
No 128
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=54.29 E-value=10 Score=30.47 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-+.+..+|++.+|++.+||.+.++.+.+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~ 63 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRES 63 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999644
No 129
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=54.25 E-value=15 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999754
No 130
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=53.69 E-value=6.7 Score=32.43 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|..+ +..++|+.++||..|||+.|+.|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455 8999999999999999999999853
No 131
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=53.68 E-value=19 Score=27.20 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.8
Q ss_pred HhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 51 RQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 51 R~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
..++.|.++.|||..++++..++.+....|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346678999999999999999999988888774
No 132
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.26 E-value=30 Score=28.45 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=25.7
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999998643
No 133
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=53.22 E-value=17 Score=28.95 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..|+.+||+..||+..||+++++.+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~ 50 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSN 50 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 5789999999999999999999998653
No 134
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=53.14 E-value=28 Score=28.87 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCChHHHHH--HHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 14 ~~v~d~A~~iyk~A~~~~~~rGR~~~~VaA--ACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
+.|++....+|..-.+.=..++|....+.| .++|++... +..+|.+|+..||-+-.++..+++++.+.+.-
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHhCCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 567777777776555443344555543333 477876554 56889999999999999999999999998864
No 135
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=53.05 E-value=24 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 46899999999999999999999999744
No 136
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=52.84 E-value=8.5 Score=30.51 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|+.+||+.+||+..||+++++.+.
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7899999999999999999988774
No 137
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=52.54 E-value=17 Score=32.29 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
++.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999744
No 138
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=51.66 E-value=14 Score=29.35 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-+.+..+|++.++|+.+||++.++.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45899999999999999999999999644
No 139
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=51.65 E-value=17 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+.+.|..+||+.++|+..++++-+..+...
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~~ 53 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRNA 53 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 567999999999999999999999999643
No 140
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=51.61 E-value=7.7 Score=31.86 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.2
Q ss_pred CCHhhHHhHhccCHHHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.|+.|||+.+|||..||++-+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 79999999999999999998764
No 141
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=51.58 E-value=12 Score=29.56 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-++|+.+|++.++++.+||.+.++.+.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999999643
No 142
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=51.55 E-value=11 Score=36.30 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..|++-+.+ -.|+. .|+.+||+.+|||..||-..|..
T Consensus 125 il~aa~~l~~-~~G~~~~T~~~IA~~AGvs~gtlY~yF~s 163 (311)
T 4ich_A 125 ILETAWRLIA-RRGYHNVRIHDIASELGTSNATIHYHFPS 163 (311)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HcCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 4444444433 35765 99999999999999999776643
No 143
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=51.41 E-value=37 Score=31.18 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHHHhcC----------CCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 35 GRRTEQVQASCLYLACRQKS----------KPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 35 GR~~~~VaAACLYiACR~~~----------~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
..+...-.|..|+.-+...+ .|.|..+||+.+|++..++.|+.+.|.+.=
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g 205 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKREN 205 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 34555555666555555433 588999999999999999999999999863
No 144
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=51.05 E-value=18 Score=30.35 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+|+.+||+.++++.+||++.++.+.+-
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999998643
No 145
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=51.02 E-value=17 Score=32.53 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 146 ALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|||.+-.+.++|.++||+..+|+...|++-+..+...
T Consensus 33 L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 33 TLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456665433457999999999999999999999998644
No 146
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.79 E-value=45 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-++|+.+|++.++++.+||.+.++.+.+-
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 557999999999999999999999999643
No 147
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=50.78 E-value=40 Score=27.40 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
|.-+.-||-.. ...+.++.+||+.+|+|..++.+.+++.. .+|+.+|....
T Consensus 9 i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~~~~~ 59 (113)
T 3oio_A 9 LTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQYL-----GTVPSKYYLEL 59 (113)
T ss_dssp HHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHHH
T ss_pred HHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 44444455443 34569999999999999999999999983 46788887653
No 148
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=50.72 E-value=22 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=27.5
Q ss_pred hcCCCCCHhhHHhHhccCHHH-HHHHHHHHhcC
Q 011262 153 THGLKFSKSDIVKIVHICEAT-LMKRLIEFENT 184 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~~Vse~T-IrkR~kE~~~t 184 (490)
.++...|+.+|++.++++.+| +.+.++.+.+-
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 345579999999999999999 99999998643
No 149
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=50.51 E-value=19 Score=32.38 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999999999643
No 150
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=50.48 E-value=21 Score=33.37 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.1
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
++.|+.+||..+|+|..||.+-+++|.+-
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999754
No 151
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=50.13 E-value=19 Score=32.77 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+.+++|.+-
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 46899999999999999999999999754
No 152
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=50.13 E-value=13 Score=31.63 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
|.++ |.+++|+..|||..|||+.|..+.
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5666 599999999999999999999985
No 153
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=49.80 E-value=12 Score=30.63 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.5
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..|..+||+.+||+..||++.++.+..+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~~ 60 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQET 60 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 4689999999999999999999888643
No 154
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=49.60 E-value=5.2 Score=32.56 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.1
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|..+ |..++++.++||..||++.|+.|..
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455 8999999999999999999998853
No 155
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=49.57 E-value=10 Score=31.51 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=25.2
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
|.++ |.+++|+..|||..|||+.|+.+.
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~ 58 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLL 58 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5566 899999999999999999999985
No 156
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=49.34 E-value=21 Score=29.13 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHH
Q 011262 40 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 119 (490)
Q Consensus 40 ~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~ 119 (490)
.+..++-||... ...+.++.+||..++++...|.+.|+.. +| ..|..||.++- ..
T Consensus 8 ~i~~~~~~i~~~-~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~~~~~R-----------l~ 62 (113)
T 3oio_A 8 KLTEAVSLMEAN-IEEPLSTDDIAYYVGVSRRQLERLFKQY---LG----------TVPSKYYLELR-----------LN 62 (113)
T ss_dssp HHHHHHHHHHTC-SSSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHhh-hcCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------HH
Confidence 444555555332 3456999999999999999998866643 33 34666666541 11
Q ss_pred HHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 120 ~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
.|.+++. .-..++.+||..+|.+ .....+.++.+. .+||.+|++.
T Consensus 63 ~A~~lL~----------------------------~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~~ 108 (113)
T 3oio_A 63 RARQLLQ----------------------------QTSKSIVQIGLACGFSSGPHFSSTYRNHF-----NITPREERAQ 108 (113)
T ss_dssp HHHHHHH----------------------------HCCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHT
T ss_pred HHHHHHH----------------------------cCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHh
Confidence 2222211 1245778888888874 456777777763 4677887765
No 157
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=49.18 E-value=22 Score=30.84 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 136 GRKPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 136 GR~PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+..|.-|.-||+=+-+ -.|+ ..|+++||+.+|||..||-+.+..
T Consensus 6 ~~~~~~Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFS-EKGYDGTTLDDISKSVNIKKASLYYHYDN 50 (192)
T ss_dssp --CHHHHHHHHHHHHH-HHCTTTCCHHHHHHHTTCCHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHH-HcCcccCCHHHHHHHhCCChHHHHHHCCC
Confidence 3456667777776655 3676 499999999999999999877643
No 158
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=48.58 E-value=21 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhHh-ccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~-~Vse~TIrkR~kE~~~t 184 (490)
.-+.++.+|++.+ +|+.+||.++++.+.+.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 4578999999999 99999999999999644
No 159
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=48.29 E-value=11 Score=32.22 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=25.6
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|.++ |.+++|+..|||..|||+.|+.+..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 8999999999999999999999853
No 160
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=48.18 E-value=24 Score=31.91 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56899999999999999999999999644
No 161
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=48.07 E-value=14 Score=31.25 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHH
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHK 104 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~R 104 (490)
..+.++.+||..+|++...|.+.|++. +| ..|..|+.+
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~---~G----------~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT---TG----------MTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH---TS----------SCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHH
Confidence 568999999999999999998877754 43 346677654
No 162
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=47.89 E-value=15 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|.++ |.+++|+..|||..|||+.|+.+..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5667 8999999999999999999999853
No 163
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=47.80 E-value=17 Score=33.33 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-++|+.+||+.+|+|.+||+++++.+.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999999999644
No 164
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=47.72 E-value=42 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.2
Q ss_pred hcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 153 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.++ .+|+.+|++.++++.+||.+.++.+.+-
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 8999999999999999999999999644
No 165
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=47.64 E-value=15 Score=32.09 Aligned_cols=38 Identities=5% Similarity=0.004 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 146 ALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|||. ..+..+|.++||+..+|+..+|++-+..+...
T Consensus 20 L~~La~-~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 20 LSILKN-NPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 444554 24557999999999999999999999999643
No 166
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=47.51 E-value=13 Score=30.55 Aligned_cols=26 Identities=4% Similarity=0.086 Sum_probs=22.6
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
...|..+||...|||..||++++..-
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 57999999999999999999876543
No 167
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.29 E-value=62 Score=26.57 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=26.1
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+|+.+|++.++++.+||.+.++.+.+-
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 37999999999999999999999998643
No 168
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=46.85 E-value=39 Score=27.75 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=36.9
Q ss_pred HHHHHHHhcCC-CcCHHHHHHHh-CcCHHHHHHHHHHHHHHhc
Q 011262 45 CLYLACRQKSK-PFLLIDFSNYL-NINVYELGAVYLQLCQVLY 85 (490)
Q Consensus 45 CLYiACR~~~~-prtL~DIa~v~-~vsv~~Lgr~yk~L~~~L~ 85 (490)
-|..+|++.|. +.++.-||..+ +-++..+...|..|.+.+.
T Consensus 43 ~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 43 VILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp HHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 57889999887 99999999999 5899999999999999875
No 169
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=46.62 E-value=14 Score=32.18 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 146 ALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|||..-.+.++|.++||+..+|+..+|++-+..+...
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455555333357999999999999999999999998644
No 170
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=46.38 E-value=19 Score=29.45 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-+.++.+|++.+|++.+||.+.++.+.+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~ 65 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSG 65 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998643
No 171
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=45.86 E-value=23 Score=29.75 Aligned_cols=102 Identities=7% Similarity=0.040 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHH
Q 011262 38 TEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKV 117 (490)
Q Consensus 38 ~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V 117 (490)
...+..++-||... ...+.++.++|+.++++...|.+.|+.. +| ..|..||.+.-
T Consensus 10 ~~~i~~~~~~i~~~-~~~~~sl~~lA~~~~~S~~~l~r~fk~~---~G----------~s~~~~l~~~R----------- 64 (129)
T 1bl0_A 10 AITIHSILDWIEDN-LESPLSLEKVSERSGYSKWHLQRMFKKE---TG----------HSLGQYIRSRK----------- 64 (129)
T ss_dssp HHHHHHHHHHHHTT-TTSCCCCHHHHHHSSSCHHHHHHHHHHH---HS----------SCHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHc-cCCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH-----------
Confidence 34455555565443 3456999999999999999998877654 44 34666665441
Q ss_pred HHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHH
Q 011262 118 CDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMA 196 (490)
Q Consensus 118 ~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~ 196 (490)
...|.+++.. -..++.+||..+|.+ .....+.++... .+||.+|+.
T Consensus 65 l~~A~~lL~~----------------------------~~~si~~IA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yR~ 111 (129)
T 1bl0_A 65 MTEIAQKLKE----------------------------SNEPILYLAERYGFESQQTLTRTFKNYF-----DVPPHKYRM 111 (129)
T ss_dssp HHHHHHHHHH----------------------------CCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHT
T ss_pred HHHHHHHHHc----------------------------CCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHH
Confidence 1122222211 135788888888875 467778777764 578889887
Q ss_pred h
Q 011262 197 R 197 (490)
Q Consensus 197 ~ 197 (490)
.
T Consensus 112 ~ 112 (129)
T 1bl0_A 112 T 112 (129)
T ss_dssp C
T ss_pred H
Confidence 6
No 172
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=45.86 E-value=24 Score=31.66 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45899999999999999999999999744
No 173
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=45.85 E-value=23 Score=29.28 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCHhhHHhHh-ccCHHHHHHHHHHHhcC
Q 011262 158 FSKSDIVKIV-HICEATLMKRLIEFENT 184 (490)
Q Consensus 158 ~t~~dIa~v~-~Vse~TIrkR~kE~~~t 184 (490)
.|+.+|++.+ ||+..||.++++.+.+.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 3499999999 99999999999999644
No 174
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=45.66 E-value=11 Score=37.05 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=23.6
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
..+.|++|||+.+|||.+|+.+.|+.-
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~ 33 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRP 33 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCG
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCC
Confidence 346789999999999999999999753
No 175
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.39 E-value=22 Score=29.43 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 139 PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
|.-+.-+.-||-.... .++++.+||+.+|+|..++.+.+++. .+|+.+|....
T Consensus 6 ~~~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~------G~s~~~~~~~~ 58 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLREE------ETSYSQLLTEC 58 (120)
T ss_dssp CCHHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHHT------TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 3444555555554443 47999999999999999999988763 36888887653
No 176
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=45.27 E-value=20 Score=25.71 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=27.8
Q ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
.+..|||..+++++.++......+.+.|+..
T Consensus 14 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 14 YTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp CCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 4779999999999999999999999998864
No 177
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.06 E-value=21 Score=29.87 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=23.7
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|+|..||++++....
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 558999999999999999998877664
No 178
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=45.05 E-value=15 Score=30.06 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=23.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
..|.++||+..+||+.||+.++..+.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46889999999999999999888764
No 179
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.64 E-value=28 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.5
Q ss_pred CCCCHhhHHhHh-----ccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIV-----HICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~-----~Vse~TIrkR~kE~~~ 183 (490)
...|..+|++.+ +|+.+||.+-++.|.+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 579999999999 9999999999999864
No 180
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=44.30 E-value=15 Score=30.77 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|||..||++++....
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999998887764
No 181
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=44.19 E-value=24 Score=29.76 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-..++.+||+.++|+.+||++.++.+..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999999854
No 182
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.11 E-value=14 Score=31.34 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||+..|||..||++++....
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 557999999999999999999887764
No 183
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=43.93 E-value=31 Score=30.39 Aligned_cols=51 Identities=10% Similarity=-0.061 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHHhcC---------CCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 36 RRTEQVQASCLYLACRQKS---------KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 36 R~~~~VaAACLYiACR~~~---------~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
.+...-.|..|..-+...+ .|.|..+||+.+|++..++.|+++.|.+.=-+
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I 169 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLI 169 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSE
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 4555555555554444333 47899999999999999999999999885333
No 184
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=43.90 E-value=13 Score=32.34 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=24.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
-...|.++||...||++.||++++.--.
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar 134 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEAL 134 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3568999999999999999999987764
No 185
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=43.85 E-value=2.5e+02 Score=27.80 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHH
Q 011262 39 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVC 118 (490)
Q Consensus 39 ~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~ 118 (490)
..+..++-||.-. ...++++.++|..++++...|.|.|++ .+| ..|..|+.+. -.
T Consensus 305 ~~~~~~~~~i~~~-~~~~~~~~~~a~~~~~s~~~l~r~f~~---~~g----------~s~~~~~~~~-----------r~ 359 (412)
T 4fe7_A 305 PAVIQAMHYIRNH-ACKGIKVDQVLDAVGISRSNLEKRFKE---EVG----------ETIHAMIHAE-----------KL 359 (412)
T ss_dssp HHHHHHHHHHHHH-GGGTCCHHHHHHHTTCCHHHHHHHHHH---HHS----------SCHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHHhh-ccCCCCHHHHHHHHCcCHHHHHHHHHH---HHC----------cCHHHHHHHH-----------HH
Confidence 3555666666544 345889999999999999999886664 344 3466666544 11
Q ss_pred HHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhcc-CHHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 119 DTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHI-CEATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 119 ~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~V-se~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
..|.+++.. -..++.+||..+|. +.....+.+|.+ .-+|+.+|++.
T Consensus 360 ~~a~~~L~~----------------------------~~~~i~~ia~~~Gf~~~~~f~~~Fk~~-----~g~tP~~~r~~ 406 (412)
T 4fe7_A 360 EKARSLLIS----------------------------TTLSINEISQMCGYPSLQYFYSVFKKA-----YDTTPKEYRDV 406 (412)
T ss_dssp HHHHHHHHH----------------------------CCCCHHHHHHHTTCSCHHHHHHHHHHH-----SSSCHHHHHHH
T ss_pred HHHHHHHhc----------------------------CCCCHHHHHHHcCCCCHHHHHHHHHHH-----HCcCHHHHHHh
Confidence 222223211 23466777777776 455677777666 25677777765
No 186
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=43.63 E-value=20 Score=29.10 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=25.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-+.++.+|++.+|++.+||.+.++.+.+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999999999964
No 187
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=43.59 E-value=19 Score=32.40 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45899999999999999999999999644
No 188
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=43.44 E-value=23 Score=31.11 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+-+ -.|+..|+++||+.+|||..||-+.+..
T Consensus 18 Il~aA~~lf~-~~G~~~t~~~IA~~agvs~~tlY~~F~s 55 (196)
T 2qwt_A 18 VLEVAYDTFA-AEGLGVPMDEIARRAGVGAGTVYRHFPT 55 (196)
T ss_dssp HHHHHHHHHH-HTCTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHhCCCHHHHHHHCCC
Confidence 4444444433 3577899999999999999999876643
No 189
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=43.34 E-value=16 Score=30.57 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=24.8
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..|..+||+.+||+..||++.++.+...
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~~~~ 49 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDPVSY 49 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSGGGT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHccccc
Confidence 4689999999999999999999988654
No 190
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=43.17 E-value=1.6e+02 Score=28.97 Aligned_cols=96 Identities=8% Similarity=-0.092 Sum_probs=67.8
Q ss_pred cchHHHHHhhhCCCCcHHHHHHHHHHHHHhhcc---ccccCCChhHHHHHHHHHHHHhcC-CCCCHhhHHhHhccCHHHH
Q 011262 99 SIFLHKFTDRLLPGGNKKVCDTARDILASMKRD---WITTGRKPSGLCGAALYVSALTHG-LKFSKSDIVKIVHICEATL 174 (490)
Q Consensus 99 ~~~I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~~~---~l~~GR~PsgIaaAALylAar~~g-~~~t~~dIa~v~~Vse~TI 174 (490)
..||.|+...-. ++..+.-.|+-.+.++... ...+.....=+--+||.+|+..++ ...+.+..+++.||+...|
T Consensus 78 ~~Yl~RI~k~t~--ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~EL 155 (293)
T 2pmi_B 78 FNYFIRLTKFSS--LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHEL 155 (293)
T ss_dssp HHHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHH
Confidence 456666665555 7888888888888887752 233456788888999999998765 5588899999999998887
Q ss_pred HHHHHHHhcCCCCCCC--HHHHHH
Q 011262 175 MKRLIEFENTDSGSLT--IEDFMA 196 (490)
Q Consensus 175 rkR~kE~~~t~s~~Lt--~~ef~~ 196 (490)
..-=.+|...-.=.|. .++|..
T Consensus 156 N~LE~eFL~lLdf~L~V~~ee~~~ 179 (293)
T 2pmi_B 156 NILENDFLKRVNYRIIPRDHNITL 179 (293)
T ss_dssp HHHHHHHHHTTTTCCSCCTTHHHH
T ss_pred HHHHHHHHHHcCCceeeCHHHHHH
Confidence 7666666544443343 344544
No 191
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=43.13 E-value=23 Score=29.44 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=25.6
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-+.++.+|++.+|++.+||.+.++.+.+.
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35788999999999999999999999643
No 192
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=43.06 E-value=21 Score=31.05 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|.-||+=+-+ -+|+..|+.+||+.+|||..||-+.+..
T Consensus 19 ~Il~aA~~lf~-~~G~~~s~~~IA~~agvs~~tlY~~F~s 57 (194)
T 2q24_A 19 KILAAAVRVFS-EEGLDAHLERIAREAGVGSGTLYRNFPT 57 (194)
T ss_dssp HHHHHHHHHHH-HHCTTCCHHHHHHHTTCCHHHHHHHCCS
T ss_pred HHHHHHHHHHH-hcCcCCCHHHHHHHhCCChHHHHHHcCC
Confidence 45555554444 2576699999999999999999876643
No 193
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=42.94 E-value=21 Score=31.89 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 39 EQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 39 ~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
..-+-+.+|+|-. .+.|.+..+||+.++++...|.+.+..|.+.
T Consensus 12 ~yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 12 SVAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3444566777764 3678999999999999999999999999885
No 194
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=42.88 E-value=13 Score=29.13 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-+.|+.+|++.++++.+||.+.++.+.+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999643
No 195
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=42.84 E-value=53 Score=29.73 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHHHHHHhc----CCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 33 TKGRRTEQVQASCLYLACRQK----SKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 33 ~rGR~~~~VaAACLYiACR~~----~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
....+...-.|..|+.-++.. ..|.|..+||+.+|++..++.|+.+.|.+.
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 334556666666555433332 257899999999999999999999999875
No 196
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=42.54 E-value=16 Score=31.08 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+.+. .|+ ..|+++||+.+|||.+||-+.+.
T Consensus 16 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 16 AIYNAFISLLQE-NDYSKITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp HHHHHHHHHTTT-SCTTTCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HHHHHHHHHHHh-CChhHhhHHHHHHHhCCcHhhHHHHcC
Confidence 444555544433 676 59999999999999999965543
No 197
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=42.53 E-value=2.4e+02 Score=28.84 Aligned_cols=26 Identities=0% Similarity=-0.041 Sum_probs=18.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
...|..+||...|||..|||++...-
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rA 404 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKA 404 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999999776543
No 198
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=42.31 E-value=17 Score=27.31 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=21.2
Q ss_pred CCHhhHHhHhccCHHHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
++.+||+..+|||..||.+..++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 78999999999999999988875
No 199
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=42.19 E-value=12 Score=36.00 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=22.1
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+.|++|||+.+|||..|+++.|+.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 468999999999999999999985
No 200
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=42.05 E-value=49 Score=27.64 Aligned_cols=54 Identities=4% Similarity=0.028 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 139 PSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 139 PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
..-|.-+.-||-... ..+.++.+||+.+|+|..++.+.+++.- .+|+.+|....
T Consensus 10 ~~~i~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk~~~-----G~s~~~~l~~~ 63 (129)
T 1bl0_A 10 AITIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKET-----GHSLGQYIRSR 63 (129)
T ss_dssp HHHHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHHH-----SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence 334444455554443 3459999999999999999999999873 46778886653
No 201
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=41.82 E-value=38 Score=30.87 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=26.2
Q ss_pred C-CCCHhhHHhHhccCH-HHHHHHHHHHhcC
Q 011262 156 L-KFSKSDIVKIVHICE-ATLMKRLIEFENT 184 (490)
Q Consensus 156 ~-~~t~~dIa~v~~Vse-~TIrkR~kE~~~t 184 (490)
+ +.|+.+||..+|+|. .|+.+-+++|.+-
T Consensus 167 ~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 167 LDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 5 789999999999999 7999999999644
No 202
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=41.56 E-value=24 Score=29.86 Aligned_cols=29 Identities=17% Similarity=0.004 Sum_probs=24.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
...|+++|++.+|+|..||.+--+.+..-
T Consensus 57 ~G~SyreIa~~tG~StaTIsRv~r~L~~g 85 (107)
T 3frw_A 57 DKRTYLDISEKTGASTATISRVNRSLNYG 85 (107)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHCccHHHHHHHHHHHHcc
Confidence 34899999999999999999888877643
No 203
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=41.53 E-value=18 Score=35.05 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.7
Q ss_pred CCHhhHHhHhccCHHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~k 179 (490)
.|++|||+.+|||.+|+++.|+
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3789999999999999999998
No 204
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.38 E-value=32 Score=25.42 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=28.8
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
...|+.|||..+++++.++........+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999988888888743
No 205
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.15 E-value=33 Score=30.29 Aligned_cols=42 Identities=10% Similarity=-0.117 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+-.-|..||+=+.+..- ...|+++||+.+|||..||-..+..
T Consensus 21 ~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~s 62 (215)
T 2hku_A 21 TRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGS 62 (215)
T ss_dssp HHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCC
Confidence 34456666666666554 7799999999999999999877653
No 206
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=41.05 E-value=41 Score=30.06 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHhcC----------CCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 37 RTEQVQASCLYLACRQKS----------KPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 37 ~~~~VaAACLYiACR~~~----------~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
+...-.|..|..-+...| .|.|..+||+.+|++..++.|..+.|.+.=
T Consensus 138 ~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 195 (220)
T 2fmy_A 138 DARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMG 195 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 444445555544444333 589999999999999999999999998853
No 207
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=41.02 E-value=95 Score=25.28 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=27.7
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
|.+..+|+..++++..++.+....|.+.--+
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv 82 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLI 82 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 8999999999999999999999999886333
No 208
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=41.01 E-value=30 Score=28.74 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 46999999999999999999999999643
No 209
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=40.97 E-value=26 Score=30.88 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+-+. +|+ ..|+.+||+.+|||..||-..+..
T Consensus 33 ~~Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 33 QSLIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp HHHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 3455555555543 786 599999999999999999877644
No 210
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=40.89 E-value=22 Score=27.41 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHH
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
....|+.++|+.+||+.+||.+...
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4568999999999999999996643
No 211
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.86 E-value=30 Score=27.63 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=28.8
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
..+..+||..+++++.++......+.+.|++.
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35899999999999999999999999999864
No 212
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=40.56 E-value=21 Score=30.52 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
..+..+||+.+||+..||++.++.+..
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999999988854
No 213
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=40.55 E-value=29 Score=30.11 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-..++.+|++.++|+..|+.++++.+.+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999643
No 214
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=40.48 E-value=17 Score=29.25 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-+.+..+|++.+|++.+|+.+.++.+.+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999964
No 215
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=40.40 E-value=31 Score=29.84 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 36 RRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 36 R~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.+...-+-+.+|+|-+ .+ + +..+||+..+++...|.+.+..|.+.
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445566677888754 44 5 99999999999999999999999874
No 216
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=40.27 E-value=98 Score=25.62 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=25.4
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 72 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5999999999999999999999998643
No 217
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=40.13 E-value=20 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.-+.+..+|++.+|++.+||.+.++.+.+.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 356799999999999999999999999643
No 218
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=40.09 E-value=33 Score=25.25 Aligned_cols=31 Identities=13% Similarity=-0.054 Sum_probs=28.0
Q ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
.+..+||..+++++.++......+.+.|+..
T Consensus 27 ~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 27 KTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999999999999988763
No 219
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=40.08 E-value=52 Score=34.06 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=46.6
Q ss_pred HHHHHhhhCCCCcHHHHHHHHHHHHHhh--ccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHh
Q 011262 102 LHKFTDRLLPGGNKKVCDTARDILASMK--RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVK 165 (490)
Q Consensus 102 I~Rf~s~L~~~l~~~V~~~A~~Iv~~~~--~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~ 165 (490)
|..+|.+|.. ...++....+.+++... ...+..+|+-.-|.=.|||+.|++.+..+|.++|..
T Consensus 286 l~~LC~~L~~-~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~ 350 (411)
T 4ell_A 286 LNTLCERLLS-EHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 350 (411)
T ss_dssp HHHHHHHHCT-TSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 4457888862 12345555666665543 346888999999999999999999998888888776
No 220
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.91 E-value=58 Score=28.83 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHHhcC---CCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 36 RRTEQVQASCLYLACRQKS---KPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 36 R~~~~VaAACLYiACR~~~---~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
.+...-.|..|..-+...+ .|.|..+||+.+|++..++.|..+.|.+.=
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g 197 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEG 197 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4445555665555555444 588999999999999999999999998853
No 221
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=39.87 E-value=28 Score=29.61 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
-|..||+=+-+. +|+. .|+++||+.+|||.+||-+.+..-
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 52 (188)
T 3qkx_A 12 QIFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKNK 52 (188)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSSH
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCCH
Confidence 355555555443 6865 999999999999999998776543
No 222
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=39.68 E-value=35 Score=27.95 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.5
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-..++.+|++.++++.+||.+.++.+.+
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999964
No 223
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=39.66 E-value=13 Score=27.88 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.1
Q ss_pred CCHhhHHhHhccCHHHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+|.+++|+.+|||..||++..+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 57899999999999999877654
No 224
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=39.34 E-value=33 Score=29.37 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|.-||+=+.+. +|+. .|+++||+.+|||..||-+.+..
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 44455544443 6764 99999999999999999877654
No 225
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=39.31 E-value=30 Score=30.72 Aligned_cols=29 Identities=7% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+.|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45899999999999999999999999654
No 226
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=39.10 E-value=29 Score=28.54 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-+.|+.+|++.++++.+||.+.++.+.+-
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457899999999999999999999999643
No 227
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=38.91 E-value=34 Score=31.44 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=27.3
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcCC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENTD 185 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~ 185 (490)
+-.+|..|+++.++||+.|||+=+.|+..+.
T Consensus 24 ~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 24 NPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3458999999999999999999999997653
No 228
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.70 E-value=36 Score=29.36 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCCCHhhHHhHh-ccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~-~Vse~TIrkR~kE~~~t 184 (490)
.-+.++.++++.+ +|+..|+.++++++.+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 4578999999999 99999999999999644
No 229
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=38.64 E-value=61 Score=26.75 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-+.|+.+|++.+|++.+|+.+.++.+.+.
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~ 68 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 457999999999999999999999998643
No 230
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=38.41 E-value=16 Score=27.86 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=18.7
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHH
Q 011262 54 SKPFLLIDFSNYLNINVYELGAV 76 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~ 76 (490)
....|+.|||..+||+..++.++
T Consensus 7 ~~~~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 7 ETAATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp --CCCHHHHHHHTTCCHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Confidence 34579999999999999999873
No 231
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=38.29 E-value=38 Score=28.42 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=32.8
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
..+.++.+||..+|+|..++.+.++... .+|+.+|...
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~-----G~tp~~y~~~ 128 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATT-----GMTPKAWQQA 128 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHT-----SSCHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 5679999999999999999999998873 5788888765
No 232
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=38.20 E-value=32 Score=29.99 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+.+. .|+ ..|+.+||+.+|||..||-+.+..
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 4455555555443 576 599999999999999999877653
No 233
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=38.16 E-value=37 Score=25.03 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=21.6
Q ss_pred CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 159 SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.+...|+.+||+..|+.++++.+.-
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~gi 58 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNI 58 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCC
Confidence 4668899999999999999998853
No 234
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=38.10 E-value=67 Score=28.78 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=36.1
Q ss_pred CChHHHHHHHH-HHHHHhc--------CCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 36 RRTEQVQASCL-YLACRQK--------SKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 36 R~~~~VaAACL-YiACR~~--------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.+...-+|..| .++-+.. ..|.|..+||+.+|++..++.|..+.|.+.
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 34455555555 4454431 358899999999999999999999999875
No 235
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=38.10 E-value=76 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 43 ASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 43 AACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
...|++..+..+.|.+..+|+..++++..++.+..+.|.+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 33455555555558999999999999999999999999885
No 236
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=37.73 E-value=26 Score=28.01 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.2
Q ss_pred hcCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 153 THGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.++.+ +...|+.+||+..|+.++++.+.
T Consensus 62 ~~~gn--~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 62 HTQGH--KQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HTTTC--TTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhCCC--HHHHHHHHCcCHHHHHHHHHHhC
Confidence 34444 45789999999999999998864
No 237
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=37.71 E-value=21 Score=25.43 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=29.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+.+.+..+++
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~~ 51 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN-----KYNPSLQLALKIAY 51 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT-----SCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999886542 23456676666643
No 238
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=37.38 E-value=39 Score=26.69 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=25.6
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 57 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEA 57 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45999999999999999999999998643
No 239
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=37.31 E-value=19 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=19.4
Q ss_pred CCHhhHHhHhccCHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~ 178 (490)
.|+.++|+.+|||..||.+..
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999875
No 240
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=37.24 E-value=27 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.1
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
-...|.++||...|+|..||++++....
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3568999999999999999999887653
No 241
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=37.19 E-value=34 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+-+ -+|+ ..|+++||+.+|||..||-+.+..
T Consensus 17 Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 17 ILTCSLDLFI-EKGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HcCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 5555554444 3586 599999999999999999876643
No 242
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=37.18 E-value=52 Score=26.69 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCChHHHHH--HHHHHHHHhcCCCcCHHHHHHHh-CcCHHHHHHHHHHHHHHhcc
Q 011262 14 DEIVHVAKRFYGIAVARNFTKGRRTEQVQA--SCLYLACRQKSKPFLLIDFSNYL-NINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 14 ~~v~d~A~~iyk~A~~~~~~rGR~~~~VaA--ACLYiACR~~~~prtL~DIa~v~-~vsv~~Lgr~yk~L~~~L~i 86 (490)
+.|++....+|..-.+.=..++|+..-+.| .++|++-.. +..+|.+|+..| |.+-.++..+++++.+.+.-
T Consensus 4 ~~I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~--t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 4 DNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKEL--TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHH--HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 456666777766444432334555443333 477775544 467899999999 89999999999999998753
No 243
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.17 E-value=27 Score=28.14 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=25.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-+.++.+|++.++++.+||.+.++.+.+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999954
No 244
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=36.99 E-value=41 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-+.++.+|++.+|++.+||.+.++.+.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999965
No 245
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=36.98 E-value=34 Score=29.19 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
.-|..|++=+.+. .|+ ..|+++||+.+|||..||-+.+..-
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK 53 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPSK 53 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 3455666655554 675 5999999999999999998776543
No 246
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=36.66 E-value=21 Score=27.17 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+-- ...+++.+..+++
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g~-----~~~~~~~~~~ia~ 62 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNGI-----NALNAYNAALLAK 62 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTTS-----SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 45899999999999999999876432 3456666666653
No 247
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=36.60 E-value=45 Score=28.92 Aligned_cols=41 Identities=12% Similarity=-0.069 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
.-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+..-
T Consensus 19 ~~Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (213)
T 2qtq_A 19 DLLLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGNK 60 (213)
T ss_dssp HHHHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCCH
Confidence 3455555555443 676 5999999999999999998877543
No 248
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=36.43 E-value=32 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+|+.+|++.++++.+||.+.++.+.+-
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 58999999999999999999999998643
No 249
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=36.41 E-value=30 Score=34.18 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.3
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+-.+|..++++.++||+.||++.++.+.+.
T Consensus 16 ~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 16 NGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4456899999999999999999999999753
No 250
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.27 E-value=40 Score=25.30 Aligned_cols=32 Identities=6% Similarity=-0.059 Sum_probs=28.4
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
..+..+||..+++++.++......+.+.|+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999999999999988763
No 251
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.17 E-value=41 Score=28.35 Aligned_cols=31 Identities=6% Similarity=0.129 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
++-.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 4556899999999999999999999999643
No 252
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.10 E-value=15 Score=35.62 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.+.|++|||+.+|||..|+++.|+.
T Consensus 9 ~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 9 RPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp -CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3579999999999999999998864
No 253
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=36.01 E-value=28 Score=29.14 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+-+.++.+|++.+|++.+||.+.++.+.+
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999999999964
No 254
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=35.98 E-value=41 Score=31.21 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 147 LYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 147 LylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
=|..+.-.|+.-+|+++|+.+|||+..|.+.++-..
T Consensus 32 ~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~ 67 (189)
T 3mky_B 32 RYASRLQNEFAGNISALADAENISRKIITRCINTAK 67 (189)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356666688999999999999999999999998874
No 255
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=35.88 E-value=19 Score=26.10 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.6
Q ss_pred HhhHHhHhccCHHHHHHHHHHHh
Q 011262 160 KSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 160 ~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
+.+||+..||+..||++..+.+.
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999877653
No 256
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.85 E-value=37 Score=29.52 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
|..||+=+-+ -.|+ ..|+.+||+.+|||..||-+.+.
T Consensus 17 Il~aA~~lf~-e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 17 ILSASYELLL-ESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 4445544433 3676 59999999999999999977664
No 257
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=35.85 E-value=37 Score=29.21 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..|++=+.+ -.|+ ..|+++||+.+|||..||-+.+..
T Consensus 19 Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 19 MLDAAVDVFS-DRGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHH-HcCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 5555554444 3576 699999999999999999877643
No 258
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.77 E-value=35 Score=28.11 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHH
Q 011262 40 QVQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCD 119 (490)
Q Consensus 40 ~VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~ 119 (490)
.+..++-||--.. ..++++.+||..++++...|.+.|+. . |+ .|..||.+.- | .
T Consensus 8 ~~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~---~-G~----------s~~~~~~~~R--l---------~ 61 (120)
T 3mkl_A 8 MRTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLRE---E-ET----------SYSQLLTECR--M---------Q 61 (120)
T ss_dssp HHHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHH---T-TC----------CHHHHHHHHH--H---------H
T ss_pred HHHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHH---c-CC----------CHHHHHHHHH--H---------H
Confidence 4445555554433 34899999999999999999887754 2 43 3556665441 1 1
Q ss_pred HHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 120 TARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 120 ~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
.|.+++ ..-..++.+||..+|.+ .....+.++.+. .+||.+|++.
T Consensus 62 ~A~~lL----------------------------~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~-----G~tP~~yr~~ 107 (120)
T 3mkl_A 62 RALQLI----------------------------VIHGFSIKRVAVSCGYHSVSYFIYVFRNYY-----GMTPTEYQER 107 (120)
T ss_dssp HHHHHH----------------------------TSTTCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHH
T ss_pred HHHHHH----------------------------HcCCCCHHHHHHHHCCCCHHHHHHHHHHHH-----CcCHHHHHHH
Confidence 222221 11246777888888864 567777777764 5678888776
No 259
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.73 E-value=22 Score=26.34 Aligned_cols=40 Identities=8% Similarity=-0.039 Sum_probs=30.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKE 200 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~ 200 (490)
...|+.++|+.+||+..||.+..+-- ...+++.+..+++-
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g~-----~~~~~~~l~~ia~~ 59 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTND-----VQPSLETLFDIAEA 59 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTTS-----SCCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCC-----CCCCHHHHHHHHHH
Confidence 35799999999999999999866432 34778887777643
No 260
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.52 E-value=41 Score=26.07 Aligned_cols=31 Identities=6% Similarity=0.002 Sum_probs=27.9
Q ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
.+..|||..++++..++......+.+.|+..
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999898888753
No 261
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=35.34 E-value=27 Score=30.48 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 139 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 139 PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-.-|..||+=+-..-+|+ ..|+++||+.+|||..||-..+.
T Consensus 26 r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 26 REEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCC
Confidence 344555555433334575 59999999999999999976553
No 262
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.32 E-value=23 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~i~ 54 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCBHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999876542 1234566665554
No 263
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.27 E-value=46 Score=24.86 Aligned_cols=31 Identities=10% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHHhc
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQVLY 85 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 85 (490)
...|+.|||..+++++.++........+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999887777777775
No 264
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=35.17 E-value=33 Score=30.12 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=26.8
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.|.|..+||+.+|++..++.|..+.|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999885
No 265
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=35.16 E-value=50 Score=27.64 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=31.2
Q ss_pred HHHHHHhcCCC-cCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 46 LYLACRQKSKP-FLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 46 LYiACR~~~~p-rtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
||.+-..++-| .|..|||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44444456667 899999999999999999999888874
No 266
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=35.00 E-value=25 Score=30.24 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+.. ...|+.+||+.+|||..||-..+..
T Consensus 18 ~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (190)
T 2v57_A 18 AILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYPE 55 (190)
T ss_dssp HHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3455555444433 7799999999999999999877654
No 267
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=34.93 E-value=42 Score=30.34 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHHHh------cCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 36 RRTEQVQASCLYLACRQ------KSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 36 R~~~~VaAACLYiACR~------~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
.+...-+|..|+--+.. ...|.|..+||+.+|++..++.|..+.|.+. |+
T Consensus 152 ~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~-gi 207 (237)
T 3fx3_A 152 QTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAA-GV 207 (237)
T ss_dssp CCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGG-TE
T ss_pred CCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC-Ce
Confidence 45555555555543332 2468899999999999999999999998875 35
No 268
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.90 E-value=47 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=26.8
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.+-+.|+.+|++.++++.+||.+.++.+.+
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 456799999999999999999999999854
No 269
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=34.82 E-value=36 Score=29.69 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+.+ -.|+ ..|+++||+.+|||..|+-..+..
T Consensus 15 ~~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 15 NRVYDACLNEFQ-THSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp HHHHHHHHHHHH-HSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HCCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 346666665554 3676 699999999999999999766543
No 270
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.75 E-value=39 Score=28.05 Aligned_cols=30 Identities=3% Similarity=0.036 Sum_probs=26.8
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-++|+.+|++.++++.+||.+.++.+.+-
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 567999999999999999999999999643
No 271
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=34.67 E-value=58 Score=25.24 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=27.2
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
+-+.|..|||..++++..++.+....|.+.=
T Consensus 29 ~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 29 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp SSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999988887753
No 272
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.63 E-value=49 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
...|+.|||..+++++.++........+.|..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988888888864
No 273
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=34.50 E-value=53 Score=28.43 Aligned_cols=28 Identities=0% Similarity=0.051 Sum_probs=25.6
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999998643
No 274
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=34.48 E-value=44 Score=29.38 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=26.9
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.|.|..+||+.+|++..++.|+.+.|.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999999885
No 275
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=34.47 E-value=31 Score=31.95 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=24.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...++|+.||+.+++.+.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568999999999999999999988874
No 276
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=34.46 E-value=32 Score=28.24 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCCHhhHHhHh-ccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIV-HICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~-~Vse~TIrkR~kE~~~ 183 (490)
-+.++.+|++.+ +|+..||.++++.+.+
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 368999999999 9999999999999953
No 277
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=34.45 E-value=52 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.++|+.+|++.++++.+||.+.++.+..-
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 45899999999999999999999999543
No 278
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.45 E-value=87 Score=27.09 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.1
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
++-.+|+.+|++.++|+.+||.+.++.+.+-
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 3567999999999999999999999998643
No 279
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=34.24 E-value=24 Score=28.55 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=23.9
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.|+.+||...||+..||+++.+.+...
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~~~ 57 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHERD 57 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 578899999999999999999998654
No 280
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=34.20 E-value=41 Score=29.20 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+ -.|+ ..|+++||+.+|||..||-+.+..
T Consensus 22 ~Il~aa~~l~~-~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 22 AILSAALDTFS-QFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHH-HcCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 35555554444 3576 599999999999999999877654
No 281
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=34.14 E-value=46 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
|.+.+..+||..++++..++.+....|.+.=
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3579999999999999999999988888753
No 282
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=34.02 E-value=33 Score=26.36 Aligned_cols=43 Identities=2% Similarity=0.075 Sum_probs=30.8
Q ss_pred hcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 153 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
+.....|+.++|+.+||+..||.+..+-- ....+++.+..+++
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~g~----~~~~~~~~l~~la~ 69 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMRGK----IDLFSLESLIDMIT 69 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHTTC----GGGCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCC----CCCCCHHHHHHHHH
Confidence 34457899999999999999999765421 11356777766653
No 283
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=33.95 E-value=32 Score=29.33 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..|++=+... +|+ ..|+++||+.+|||..||-+.+..
T Consensus 12 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 12 DILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 355555554443 676 499999999999999999877654
No 284
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=33.91 E-value=54 Score=28.22 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+-+ -.|+. .|+.+||+.+|||..||-..++.
T Consensus 8 Il~aA~~lf~-~~G~~~~s~~~IA~~agvsk~t~Y~~F~s 46 (190)
T 3vpr_A 8 ILEEAAKLFT-EKGYEATSVQDLAQALGLSKAALYHHFGS 46 (190)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4444444433 35765 89999999999999999777643
No 285
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=33.72 E-value=25 Score=25.46 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=21.6
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
...|+.++|+.+||+..||.+..+-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4579999999999999999887653
No 286
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=33.71 E-value=77 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=26.3
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
-+.+..|||+.++++..++.+....|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999988875
No 287
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=33.67 E-value=67 Score=26.63 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
++|+.+|++.++++.+|+.+.++.+.+-
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999998643
No 288
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=33.63 E-value=41 Score=29.17 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+ -.|+. .|+++||+.+|||..||-+.|..
T Consensus 18 ~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 18 HILDVALRLFS-QQGVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCceeehhhcCC
Confidence 35555554444 35765 99999999999999999877644
No 289
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=33.52 E-value=2.6e+02 Score=26.30 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccc-----------------------
Q 011262 44 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSI----------------------- 100 (490)
Q Consensus 44 ACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~----------------------- 100 (490)
..|++-....+-+.+..||+..++++..++.+..+.|.+.=-+.-.. ||.+
T Consensus 38 ~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~------~~~DrR~~~i~LT~~G~~~~~~~~~~~ 111 (250)
T 1p4x_A 38 ILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVR------SKIDERNTYISISEEQREKIAERVTLF 111 (250)
T ss_dssp HHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEE------CSSSTTSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecC------CCCCCCeEEEEECHHHHHHHHHHHHHH
Q ss_pred --hHHHHHhhhCCCCc-------HHHHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCH
Q 011262 101 --FLHKFTDRLLPGGN-------KKVCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICE 171 (490)
Q Consensus 101 --~I~Rf~s~L~~~l~-------~~V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse 171 (490)
++..+... +.+++ ..+...+..+-+.... +...-.-+.--..+|.......|..+|+.+|++.++++.
T Consensus 112 ~~~~eq~s~E-~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~ 188 (250)
T 1p4x_A 112 DQIIKQFNLA-DQSESQMIPKDSKEFLNLMMYTMYFKNI--IKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKY 188 (250)
T ss_dssp HHHHHHHHHH-TTCCSSCSCCSHHHHHHHHHHHHHHHHH--HHHHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCH
T ss_pred HHHHHHHhcc-cccccccchHHHHHHHHHHHHHHHHHHH--HHhhCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCh
Q ss_pred HHHHHHHHHHhc
Q 011262 172 ATLMKRLIEFEN 183 (490)
Q Consensus 172 ~TIrkR~kE~~~ 183 (490)
+||.+.++.+..
T Consensus 189 ~tvt~~v~rLe~ 200 (250)
T 1p4x_A 189 PQTVRALNNLKK 200 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
No 290
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.36 E-value=33 Score=31.01 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=23.7
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
....|.++||...|||..||++++...
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra 227 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKA 227 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 456899999999999999999888654
No 291
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=33.33 E-value=1.1e+02 Score=25.44 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 37999999999999999999999998643
No 292
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=33.32 E-value=41 Score=29.31 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..|++=+.+ -.|+. .|+++||+.+|||..||-+.|..
T Consensus 35 ~Il~aa~~l~~-~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 74 (218)
T 3dcf_A 35 QIIKVATELFR-EKGYYATSLDDIADRIGFTKPAIYYYFKS 74 (218)
T ss_dssp HHHHHHHHHHH-HTCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 34445554443 36764 99999999999999999877653
No 293
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.29 E-value=27 Score=25.13 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.5
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
..+|+.++|+.+||+..||.+..+-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4589999999999999999887554
No 294
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=33.11 E-value=36 Score=28.28 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=39.1
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHhCCC--CCCCChH---HHHHHHHHHHHHhcCCCcCHHHHHHHhC--cCHHHHH
Q 011262 2 RQMKNALNIGESDEIVHVAKRFYGIAVARNF--TKGRRTE---QVQASCLYLACRQKSKPFLLIDFSNYLN--INVYELG 74 (490)
Q Consensus 2 ~~ia~~L~Lp~~~~v~d~A~~iyk~A~~~~~--~rGR~~~---~VaAACLYiACR~~~~prtL~DIa~v~~--vsv~~Lg 74 (490)
..||..||++ ...+..-..-| ...+. ..||... ......+-+ + .+-..+..+|+..++ ++..+|.
T Consensus 26 ~~ia~~lgis--~~Tv~r~~~~~---~~~g~~~~~gr~~~l~~~~~~~i~~~-~--~~~~~s~~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 26 HEMSRKISRS--RHCIRVYLKDP---VSYGTSKRAPRRKALSVRDERNVIRA-A--SNSCKTARDIRNELQLSASKRTIL 97 (141)
T ss_dssp HHHHHHHTCC--HHHHHHHHHSG---GGTTCCCCCCCCCSSCHHHHHHHHHH-H--HHCCCCHHHHHHHTTCCSCHHHHH
T ss_pred HHHHHHHCcC--HHHHHHHHHcc---cccCCcCCCCCCCcCCHHHHHHHHHH-H--hCCCCCHHHHHHHHCCCccHHHHH
Confidence 5788999999 66654433333 23332 2354321 111222212 2 223478999999988 7888887
Q ss_pred HHHHH
Q 011262 75 AVYLQ 79 (490)
Q Consensus 75 r~yk~ 79 (490)
+.++.
T Consensus 98 r~l~~ 102 (141)
T 1u78_A 98 NVIKR 102 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
No 295
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.07 E-value=46 Score=26.52 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=28.3
Q ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
.+..+||..+++++.++......+.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 6889999999999999999999999999864
No 296
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=32.89 E-value=32 Score=32.30 Aligned_cols=29 Identities=10% Similarity=0.323 Sum_probs=26.5
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|.+++..++++.+|||..|||..|+.+.
T Consensus 46 pG~~L~e~~La~~lgVSr~~VReAL~~L~ 74 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVREALRQLE 74 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46778999999999999999999999985
No 297
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=32.85 E-value=46 Score=29.31 Aligned_cols=39 Identities=23% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+-+. .|+..|+++||+.+|||..||-..+..
T Consensus 16 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 16 QLIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcCC
Confidence 455555554443 565599999999999999999887754
No 298
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=32.75 E-value=46 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.9
Q ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 57 FLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
.+..|||..+++++.++......+.+.|++.
T Consensus 50 ~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 50 FLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999999864
No 299
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=32.74 E-value=41 Score=28.88 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+-+.+ -.|+. .|+.+||+.+|||..||-..+..
T Consensus 22 Il~aa~~l~~-~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 22 LMEIALEVFA-RRGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHHHHHHHHH-HSCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HHHHHHHHHH-hcCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 5555555544 46876 99999999999999999776643
No 300
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.74 E-value=35 Score=25.73 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.2
Q ss_pred cCHHHHHHHhCcCHHHHHHHH
Q 011262 57 FLLIDFSNYLNINVYELGAVY 77 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~y 77 (490)
.|+.|||..+||+..++.+++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 378999999999999998754
No 301
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.71 E-value=43 Score=28.39 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=25.6
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999999999643
No 302
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=32.70 E-value=30 Score=28.80 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
..|..+||+.+|||++||.+-++.+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 47899999999999999999998885
No 303
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=32.60 E-value=52 Score=28.55 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+.+ -.|+ ..|+.+||+.+|||..||-+.+..
T Consensus 20 ~~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 20 DRISTVGIELFT-EQGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHH-HHCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HcCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 445555555544 3676 499999999999999999776654
No 304
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=32.42 E-value=39 Score=29.78 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHhc---------CCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 36 RRTEQVQASCLYLACRQK---------SKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 36 R~~~~VaAACLYiACR~~---------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.+...-.|..|..-+... ..|.|..+||+.+|++..++.|..+.|.+.
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 344444555554444333 257899999999999999999999999885
No 305
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.39 E-value=58 Score=28.57 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+-+ -.|+ ..|+++||+.+|||..||-+.+..
T Consensus 11 ~~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~tiY~~F~s 51 (202)
T 2d6y_A 11 ARIFEAAVAEFA-RHGIAGARIDRIAAEARANKQLIYAYYGN 51 (202)
T ss_dssp HHHHHHHHHHHH-HHTTTSCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-HcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 345555554444 3676 599999999999999999877643
No 306
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=32.25 E-value=44 Score=26.31 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.5
Q ss_pred CCCCCHhhH----HhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDI----VKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dI----a~v~~Vse~TIrkR~kE~~~ 183 (490)
+-..++.+| ++..+++.+||.+.++.+.+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356899999 89999999999999999864
No 307
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=32.23 E-value=36 Score=29.01 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 139 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 139 PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-.-|..||+-+.+. .|+ ..|+++||+.+|||..||-+.+..
T Consensus 12 r~~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 12 QVKIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 34566666665554 576 599999999999999999766543
No 308
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=32.20 E-value=1.2e+02 Score=25.16 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=27.9
Q ss_pred hcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 52 QKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 52 ~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.++ +.++.|||..++++..++.+....|.+.
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 344 9999999999999999999999999886
No 309
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=32.18 E-value=35 Score=28.13 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-+.|+.+|++.++++.+||.+.++.+.+-
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36999999999999999999999999643
No 310
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=32.17 E-value=45 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=28.9
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
..|.|..+||+.+|++..++.|..+.|.+.=-|
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 208 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDEGII 208 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSE
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcE
Confidence 468899999999999999999999999986333
No 311
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=32.10 E-value=83 Score=24.68 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=32.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|..+||+..|+..++..+..-. ...+++.+...++
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g~-~~p~~~~l~~la~ 55 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKGK-HAPDFEMANRLAK 55 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHTS-SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCCC-CCCCHHHHHHHHH
Confidence 357999999999999999666666664332 4677888777754
No 312
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=32.00 E-value=36 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
.-|..||+=+.+ -+|+ ..|+++||+.+|||..||-+.+..-
T Consensus 11 ~~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (206)
T 3dew_A 11 SRLMEVATELFA-QKGFYGVSIRELAQAAGASISMISYHFGGK 52 (206)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHSCHH
T ss_pred HHHHHHHHHHHh-cCCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 345555555544 3686 6999999999999999998776543
No 313
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=31.98 E-value=43 Score=29.01 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+ -.|+ ..|+++||+.+|||..||-..+..
T Consensus 8 ~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 8 MILRTAIDYIG-EYSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHH-HSCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 45555554444 3676 499999999999999999887754
No 314
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=31.95 E-value=36 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCCCCHhhHHhHh-ccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIV-HICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~-~Vse~TIrkR~kE~~~ 183 (490)
.-+.++.+|++.+ ||+..||.++++.+.+
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3468999999999 7999999999999953
No 315
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.94 E-value=29 Score=25.67 Aligned_cols=39 Identities=3% Similarity=0.039 Sum_probs=29.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~la~ 60 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG-----DRNISLINIHKICA 60 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----CSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999876532 23466777766643
No 316
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=31.88 E-value=28 Score=26.13 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
..+|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g-----~~~p~~~~l~~ia 51 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS-----ETAPVVVKYIAFL 51 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC-----CSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 4589999999999999999875432 1235555555554
No 317
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=31.78 E-value=51 Score=28.01 Aligned_cols=30 Identities=7% Similarity=0.012 Sum_probs=26.7
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 447999999999999999999999999644
No 318
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=31.75 E-value=21 Score=26.89 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=21.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
...|+.++|+.+||+..||.+.-+
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 568999999999999999988644
No 319
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=31.69 E-value=32 Score=29.61 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=24.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
...|+++|++.+|+|..||.+--+.+..
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r~L~~ 101 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKRSLQW 101 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3499999999999999999987777754
No 320
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=31.64 E-value=16 Score=32.79 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..++|+.+||..+|+|..|+.+-+++|.+-
T Consensus 162 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 191 (213)
T 1o5l_A 162 TLPVTLEELSRLFGCARPALSRVFQELERE 191 (213)
T ss_dssp ------------------------------
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357899999999999999999999999644
No 321
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=31.59 E-value=42 Score=26.29 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=29.5
Q ss_pred hcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 153 THGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
.....+|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~G-----~~~p~~~~l~~ia 58 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKG-----IAIPRMGKVQALA 58 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTT-----SCCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhC-----CCCCCHHHHHHHH
Confidence 3445689999999999999999876542 2334666666654
No 322
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=31.50 E-value=77 Score=28.15 Aligned_cols=30 Identities=7% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+||+.++++.+||.+.++.+..-
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 84 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999998543
No 323
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.48 E-value=30 Score=25.68 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=29.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- .....+++.+..+++
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g----~~~~~~~~~l~~ia~ 58 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG----RSKRPTITTIRKVCG 58 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT----TCCCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 4689999999999999999876532 112567777777654
No 324
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=31.38 E-value=46 Score=29.12 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+.+ -+|+. .|+.+||+.+|||..||-+.+..
T Consensus 22 Il~aA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 60 (218)
T 3gzi_A 22 LILAARNLFI-ERPYAQVSIREIASLAGTDPGLIRYYFGS 60 (218)
T ss_dssp HHHHHHHHHH-TSCCSCCCHHHHHHHHTSCTHHHHHHHSS
T ss_pred HHHHHHHHHH-HCCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4444444433 46875 99999999999999999887743
No 325
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=31.34 E-value=91 Score=25.95 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=26.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-++|+.+|++.++++.+||.+.++.+.+-
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37999999999999999999999998643
No 326
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=31.23 E-value=55 Score=23.69 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=25.4
Q ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHhc
Q 011262 57 FLLIDFSNYLNINVYELGAVYLQLCQVLY 85 (490)
Q Consensus 57 rtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 85 (490)
.+..+||..+++++.++.+......+.|.
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 68999999999999999888888777775
No 327
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.22 E-value=51 Score=27.71 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999643
No 328
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=31.21 E-value=47 Score=29.18 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+-+. .|+. .|+++||+.+|||..||-..+..
T Consensus 19 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 19 AVLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 455555555443 6765 99999999999999999877754
No 329
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=31.08 E-value=45 Score=27.00 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCCCCHhhHHhHh-ccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIV-HICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~-~Vse~TIrkR~kE~~~t 184 (490)
.-+.++.+|++.+ |++..||.++++.+.+.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~ 66 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGK 66 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC
Confidence 4468999999999 59999999999999644
No 330
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=31.07 E-value=71 Score=28.57 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
..|+.+||+.+|||..||.+..+.
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc
Confidence 589999999999999999998774
No 331
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=30.96 E-value=45 Score=29.03 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+-+ -.|+. .|+.+||+.+|||..||-+.+..
T Consensus 13 ~~Il~aa~~l~~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (216)
T 3s5r_A 13 ELLLDAATTLFA-EQGIAATTMAEIAASVGVNPAMIHYYFKT 53 (216)
T ss_dssp HHHHHHHHHHHH-HHCTTTCCHHHHHHTTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HcCcccCCHHHHHHHHCCCHHHHHHHcCC
Confidence 445555555544 36765 99999999999999999877643
No 332
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.94 E-value=30 Score=25.45 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia 54 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS-----ETEPNGENLLALS 54 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 3579999999999999999886542 2235666666654
No 333
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=30.92 E-value=50 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+.+ -.|+ ..|+++||+.+|||..||-..+.
T Consensus 12 ~Il~aA~~l~~-~~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 12 QIVAAADELFY-RQGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 34455554444 3576 59999999999999999977654
No 334
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=30.86 E-value=32 Score=32.32 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
|.++ |..++|+..|||..|||+.|..+..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5677 7999999999999999999999953
No 335
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=30.86 E-value=51 Score=28.10 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=29.7
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
+-.-|..||+=+.+. +|+ ..|+++||+.+|||..||-+.+.
T Consensus 11 ~r~~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 11 TRQHLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp HHHHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 344555566555543 576 59999999999999999966553
No 336
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=30.82 E-value=38 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+.+. +|+. .|+++||+.+|||..||-..+..
T Consensus 22 Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 22 IVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 55555554443 6765 99999999999999999776644
No 337
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.79 E-value=30 Score=25.50 Aligned_cols=39 Identities=5% Similarity=0.035 Sum_probs=29.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 60 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN-----KSQPSLDMLVKVAE 60 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4689999999999999999876542 22456777766653
No 338
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.72 E-value=42 Score=28.59 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 347999999999999999999999999643
No 339
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=30.60 E-value=39 Score=28.73 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|.-||+=+-+ -.|+. .|+++||+.+|||..||-+.+..
T Consensus 13 ~~Il~aa~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 53 (191)
T 3on4_A 13 ERILAVAEALIQ-KDGYNAFSFKDIATAINIKTASIHYHFPS 53 (191)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCcchhhhcCCC
Confidence 344455554444 36765 99999999999999999877643
No 340
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=30.57 E-value=60 Score=23.44 Aligned_cols=21 Identities=5% Similarity=0.197 Sum_probs=19.8
Q ss_pred CHhhHHhHhccCHHHHHHHHH
Q 011262 159 SKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~k 179 (490)
|+.++|+.+|||..||.+..+
T Consensus 15 s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 999999999999999999884
No 341
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=30.56 E-value=79 Score=23.72 Aligned_cols=41 Identities=7% Similarity=0.064 Sum_probs=27.3
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhC
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLL 110 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~ 110 (490)
..|..+||..+||+..+|.+... |- .. + +...+.++|..|+
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~------g~-~~------~-~~~~~~~ia~~l~ 65 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFN------GI-NA------L-NAYNAALLAKILK 65 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT------TS-SC------C-CHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc------CC-CC------C-CHHHHHHHHHHhC
Confidence 46899999999999888876321 11 11 1 2356777887776
No 342
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=30.54 E-value=49 Score=28.84 Aligned_cols=41 Identities=24% Similarity=0.141 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 139 PSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 139 PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-.-|..||+=+-+ -+|+ ..|+++||+.+|||..||-+.+..
T Consensus 13 r~~Il~aA~~lf~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 54 (216)
T 3f0c_A 13 LELIINAAQKRFA-HYGLCKTTMNEIASDVGMGKASLYYYFPD 54 (216)
T ss_dssp HHHHHHHHHHHHH-HHCSSSCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-HcCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 3345555555444 3687 499999999999999999776643
No 343
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=30.48 E-value=34 Score=25.88 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=20.3
Q ss_pred CHhhHHhHhccCHHHHHHHHHH
Q 011262 159 SKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|+.++|+.+||+..||.+..+-
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 9999999999999999988765
No 344
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.31 E-value=27 Score=30.43 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+-.-|.-||+=+-+. .|+. .|+++||+.+|||..||-+.+..
T Consensus 14 ~r~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 56 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQN 56 (195)
T ss_dssp HHHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcCC
Confidence 345566666665554 6875 99999999999999999765543
No 345
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=30.29 E-value=11 Score=36.50 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
+.|++|||+.+|||.+|+++.|+.-
T Consensus 5 ~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 5 TTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp -------------------------
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 5789999999999999999999864
No 346
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.28 E-value=30 Score=26.30 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=30.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
..+|+.++|+.+||+..||.+..+- .....+++.+..+++
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G----~~~~p~~~~l~~ia~ 61 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN----LQTNPSIQFLEKVSA 61 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT----SCCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC----CCCCCCHHHHHHHHH
Confidence 4589999999999999999876543 134567777777654
No 347
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=30.27 E-value=39 Score=29.74 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+.+ -.|+ ..|+.+||+.+|||..||-..+..
T Consensus 28 Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 28 VLHAVGELLL-TEGTAQLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 4444444333 3676 599999999999999999776643
No 348
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=30.23 E-value=53 Score=28.25 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+-+. +|+ ..|+++||+.+|||..||-+.+.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 15 ELANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 455555555443 676 49999999999999999966553
No 349
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=30.20 E-value=32 Score=31.90 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=24.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|||+.||+.+++.+.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567999999999999999999988874
No 350
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=30.12 E-value=39 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+.+ -+|+ ..|+.+||+.+||+..||-..+..
T Consensus 31 Il~aA~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 69 (217)
T 3mvp_A 31 ILQVAKDLFS-DKTYFNVTTNEIAKKADVSVGTLYAYFAS 69 (217)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-HcCccccCHHHHHHHhCCChhHHHHHcCC
Confidence 5555555544 3686 599999999999999999877654
No 351
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=30.12 E-value=35 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.4
Q ss_pred cCCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 154 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 154 ~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.|.++ |..++|+..|||..|||+.|..+..
T Consensus 25 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 25 QGDKLPVLETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677 7999999999999999999999853
No 352
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.10 E-value=33 Score=25.07 Aligned_cols=39 Identities=3% Similarity=-0.010 Sum_probs=29.1
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~l~~ 63 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG-----QRNVSLVNILKLAT 63 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----CSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999875432 24567777766643
No 353
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=30.00 E-value=54 Score=25.67 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=23.6
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHHhc
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQVLY 85 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 85 (490)
..+..+||..+++++.++........+.|.
T Consensus 53 g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 53 GWSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 368999999999999888776666665553
No 354
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=29.97 E-value=93 Score=27.69 Aligned_cols=30 Identities=0% Similarity=-0.017 Sum_probs=27.3
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
.|.|..+||+.+|++..++.|..+.|.+.=
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 205 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHRG 205 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 478999999999999999999999998853
No 355
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=29.78 E-value=52 Score=27.76 Aligned_cols=30 Identities=3% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 55 ~~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 55 NDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp CSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 346999999999999999999999998643
No 356
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=29.68 E-value=42 Score=29.59 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|.-||+=+-+ -+|+. .|+.+||+.+|||..||-..++
T Consensus 15 ~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 15 GILDAAERVFL-EKGVGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp HHHHHHHHHHH-HSCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 44444544433 46875 8999999999999999976654
No 357
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=29.60 E-value=45 Score=28.56 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 140 sgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
.-|..||+=+-+. +|+..|+++||+.+|||..||-..+.
T Consensus 12 ~~Il~aA~~lf~~-~G~~~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 12 ERLLEAAAALTYR-DGVGIGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHHHH-HCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHHcC
Confidence 3455555544443 46558999999999999999977664
No 358
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=29.55 E-value=37 Score=26.30 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=19.9
Q ss_pred CHhhHHhHhccCHHHHHHHHHH
Q 011262 159 SKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE 180 (490)
++.++|+.+|||..||.+.+.-
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999999764
No 359
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=29.55 E-value=68 Score=28.13 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
|.-||+=+-+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 17 Il~aA~~lf~-~~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 17 IIQAATAAFI-SKGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3444443333 36875 9999999999999999987764
No 360
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=29.53 E-value=40 Score=28.84 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-..++.++++.++|+.+||++.++.+..-
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 45799999999999999999999998644
No 361
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.53 E-value=31 Score=27.50 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKEL 201 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~l 201 (490)
...|+.++|+.+||+..||.+..+- . .++++...++++-|
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G--~----~~s~~~l~kIa~~L 75 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN--E----NVSLTVLLAICEYL 75 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT--C----CCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC--C----CcCHHHHHHHHHHH
Confidence 4689999999999999999877653 1 25777777776433
No 362
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.36 E-value=52 Score=29.53 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+. .|+. .|+++||+.+|||..||-..|..
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~s 86 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGN 86 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCC
Confidence 455556555543 6765 99999999999999999876654
No 363
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=29.29 E-value=39 Score=31.15 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=26.4
Q ss_pred cCCCC-CHhhHHhHhccCHHHHHHHHHHHh
Q 011262 154 HGLKF-SKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 154 ~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|.++ |..++|+..|||..|||..++.+.
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVReAL~~L~ 56 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLREVLQRLA 56 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46788 799999999999999999999985
No 364
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=29.26 E-value=57 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.1
Q ss_pred ChhHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
+-.-|.-||+=+-+. +|+. .|+++||+.+|||..||-+.+.
T Consensus 12 ~r~~il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 53 (196)
T 3he0_A 12 KRDQILAAAEQLIAE-SGFQGLSMQKLANEAGVAAGTIYRYFS 53 (196)
T ss_dssp CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 344566666655553 4765 9999999999999999976554
No 365
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=35.37 E-value=12 Score=29.26 Aligned_cols=41 Identities=15% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHHHHHHhcCC-CcCHHHHHHHhCcCHHHHHHHHHHHHHHhc
Q 011262 45 CLYLACRQKSK-PFLLIDFSNYLNINVYELGAVYLQLCQVLY 85 (490)
Q Consensus 45 CLYiACR~~~~-prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~ 85 (490)
-|..+|++.|. |-++.-||..++-++..+...|.+|.+.+.
T Consensus 24 ~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 24 VILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFE 65 (70)
Confidence 46788998876 899999999999999999999999988663
No 366
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=29.02 E-value=38 Score=27.26 Aligned_cols=24 Identities=4% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCHhhHHhHhccCHHHHHHHHHHH
Q 011262 158 FSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 158 ~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
.+|+.||+.+||+++||.+.-..+
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 578999999999999999977654
No 367
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=28.98 E-value=70 Score=24.91 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=26.7
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
+-+.+..|||..++++..++.+....|.+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 557899999999999999999988888764
No 368
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=28.95 E-value=1.5e+02 Score=24.09 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=25.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-..|+.+|++.++++.+||.+.++.+.+-
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 36899999999999999999999998643
No 369
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=28.93 E-value=36 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.0
Q ss_pred CHhhHHhHhccCHHHHHHHHHHH
Q 011262 159 SKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
.+...|+.+||+..|+.++++.+
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 35678999999999999999875
No 370
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=28.88 E-value=48 Score=27.91 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 346999999999999999999999999643
No 371
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=28.86 E-value=2.1e+02 Score=23.24 Aligned_cols=74 Identities=8% Similarity=0.045 Sum_probs=41.5
Q ss_pred CcCHHHHHHHhCcCHHHHHHH-----------HHHHHHHhccccccccccc--CCccchHHHHHhhhCCCCcHHHHHHHH
Q 011262 56 PFLLIDFSNYLNINVYELGAV-----------YLQLCQVLYIADESNVLKQ--VDPSIFLHKFTDRLLPGGNKKVCDTAR 122 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~-----------yk~L~~~L~i~~~~~~~~~--vdP~~~I~Rf~s~L~~~l~~~V~~~A~ 122 (490)
..|..++|..+||+..+|.+. +..|+..|+++..-.+... .........+...+.. +++.-.....
T Consensus 25 glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~~i~ 103 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDN-FTDADLVIME 103 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCCHHHHHHHHHTTT-CCHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhCCCccccchHHHHHHHHHHHc-CCHHHHHHHH
Confidence 357777888888777777664 4456666665432211111 1122344455555542 5677777777
Q ss_pred HHHHHhhc
Q 011262 123 DILASMKR 130 (490)
Q Consensus 123 ~Iv~~~~~ 130 (490)
.+++.+..
T Consensus 104 ~~i~~l~~ 111 (126)
T 3ivp_A 104 SVADGIVK 111 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766653
No 372
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=28.85 E-value=88 Score=26.84 Aligned_cols=29 Identities=3% Similarity=0.039 Sum_probs=23.3
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+-.+|+.+|++.++|+.+||.+.++.+.+
T Consensus 60 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 60 PEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 46899999999999999999999998853
No 373
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.76 E-value=56 Score=28.55 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
|..||+=+-+ -.|+. .|+.+||+.+|||..||-..+.
T Consensus 19 Il~aA~~lf~-~~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 19 LLDIAATLFA-ERGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 4444444443 35765 9999999999999999976653
No 374
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=28.74 E-value=38 Score=31.89 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=26.1
Q ss_pred cCCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 154 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 154 ~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.|.++ |..++|+..|||..|||+.|..+..
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 60 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVRQALSNLVN 60 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667 7899999999999999999999853
No 375
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=28.70 E-value=59 Score=27.77 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+.+ -+|+. .|+++||+.+|||..||-+.++
T Consensus 11 ~Il~aa~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 11 RVVAQAAALFN-VSGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHHHH-HHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHHHH-HhCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 34555554444 36765 9999999999999999976654
No 376
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=28.70 E-value=29 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|.-|++=+.+. .|+ ..|+++||+.+|||..||-..+..
T Consensus 9 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 9 EKILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccc
Confidence 3455566555554 676 599999999999999999877753
No 377
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=28.69 E-value=38 Score=32.05 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=27.0
Q ss_pred hcCCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 153 THGLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 153 ~~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
..|.++ |..++|+..|||..|||+.|..+..
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 62 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLI 62 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346777 7999999999999999999999953
No 378
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=28.68 E-value=34 Score=25.88 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g-----~~~~~~~~l~~l~~ 64 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA-----ERRLDVIEFMDFCR 64 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999877542 13467777766653
No 379
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=28.60 E-value=51 Score=29.53 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+ -.|+. .|+++||+.+|||..||-..+..
T Consensus 43 ~Il~AA~~lf~-e~G~~~~tv~~IA~~AGvs~~tlY~~F~s 82 (214)
T 2guh_A 43 LIVDAAGRAFA-TRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHH-HcChhhcCHHHHHHHhCCCHHHHHHHcCC
Confidence 34555554444 36765 99999999999999999887754
No 380
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=28.59 E-value=78 Score=28.31 Aligned_cols=30 Identities=13% Similarity=-0.040 Sum_probs=27.5
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
.|.|..+||+.+|++..++.|+++.|.+.=
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g 203 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHN 203 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998853
No 381
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=28.55 E-value=57 Score=28.46 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+-+. .|+ ..|+++||+.+|||..||-+.+.
T Consensus 15 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~ 53 (212)
T 2ras_A 15 RLVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYFE 53 (212)
T ss_dssp HHHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 455555544443 576 59999999999999999965553
No 382
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.52 E-value=49 Score=27.40 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=25.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 37899999999999999999999998643
No 383
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=28.45 E-value=57 Score=28.39 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
|.-||+=+-+ -+|+. .|+.+||+.+|||..||-+.+.
T Consensus 14 Il~aA~~lf~-~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~ 51 (204)
T 3anp_C 14 IFRAAMELFR-NRGFQETTATEIAKAAHVSRGTFFNYYP 51 (204)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-HcCcccccHHHHHHHcCCchHHHHHHcC
Confidence 4444444333 35875 8999999999999999976653
No 384
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=28.44 E-value=34 Score=25.84 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=29.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g-----~~~~~~~~l~~ia~ 61 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN-----SRNLTIKSLELIMK 61 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT-----CCCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999876432 13567777766653
No 385
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.39 E-value=40 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
-++|+.+|++.++++.+||.+.++.+.+
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3699999999999999999999999864
No 386
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.37 E-value=80 Score=27.76 Aligned_cols=48 Identities=13% Similarity=-0.010 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhc---CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 39 EQVQASCLYLACRQK---SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 39 ~~VaAACLYiACR~~---~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
..-.|..|..-++.. ..|.|..+||+.+|++..++.|..+.|.+.=-+
T Consensus 143 ~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I 193 (216)
T 4ev0_A 143 RNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVV 193 (216)
T ss_dssp HHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 334444444333332 247899999999999999999999999986433
No 387
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=28.18 E-value=1.1e+02 Score=24.94 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 44 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 44 ACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.+|++..+..+-|.++.|||+.++++..++.+....|.+.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 3444444443468999999999999999999999999885
No 388
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.05 E-value=35 Score=25.66 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
...|+.++|+.+||+..||.+..+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 468999999999999999987654
No 389
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=28.02 E-value=44 Score=27.71 Aligned_cols=27 Identities=4% Similarity=0.230 Sum_probs=24.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|..++|+.++||++||-+-.+.+.
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 457899999999999999999988884
No 390
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=28.01 E-value=11 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=25.2
Q ss_pred cCCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 154 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 154 ~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.|.++ |.+++|...|||..|||+.|..+..
T Consensus 31 ~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3ic7_A 31 EEGRIPSVREYASIVEVNANTVMRSYEYLQS 61 (126)
T ss_dssp BTSEECCTTTTTTCC-CCSGGGHHHHHHHHT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35666 7999999999999999999999953
No 391
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=27.90 E-value=51 Score=28.53 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|.-||+=+-+. +|+..|+.+||+.+|||..||-+.+.
T Consensus 20 ~Il~aA~~lf~~-~G~~~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 20 RIIEAAAAEVAR-HGADASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp HHHHHHHHHHHH-HGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHh-cCCCCCHHHHHHHhCCchHHHHHHCC
Confidence 344444433332 45678999999999999999976654
No 392
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=27.80 E-value=10 Score=33.45 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 151 ALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 151 ar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
....|.++|..++|+.+|||..|||.+++.+...
T Consensus 21 ~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~ 54 (163)
T 2gqq_A 21 ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3446888999999999999999999999998644
No 393
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.79 E-value=44 Score=25.35 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+-- ...+++.+..+++
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g~-----~~~~~~~l~~i~~ 62 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENNP-----DNTTLTTFFKILQ 62 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCG-----GGCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 46899999999999999998876632 2356777776654
No 394
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=27.78 E-value=65 Score=28.02 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|.-||+-+-+ -+|+ ..|+.+||+.+|||..||-..+.
T Consensus 11 ~Il~aA~~lf~-~~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 11 EILQAALACFS-EHGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 45555554444 3687 58999999999999999976653
No 395
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=27.76 E-value=42 Score=28.96 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
-|..||+=+.+ -.|+. .|+++||+.+|||..||-..+..-
T Consensus 11 ~Il~aA~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 51 (195)
T 2dg7_A 11 RLKRAALELYS-EHGYDNVTVTDIAERAGLTRRSYFRYFPDK 51 (195)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHTTCCHHHHHHHCSST
T ss_pred HHHHHHHHHHH-hcCccccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 34445544443 36765 999999999999999997776543
No 396
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=27.66 E-value=42 Score=26.13 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
...|+.++|+.+||+..||.+..+-- ...+.+.+..++
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g~-----~~~~~~~~~~i~ 57 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTGK-----AALTPEMAIKLS 57 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHTS-----SCCCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcCC-----CCCCHHHHHHHH
Confidence 45899999999999999999876531 245566555553
No 397
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.65 E-value=43 Score=26.27 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=28.2
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHHhccc
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQVLYIA 87 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~ 87 (490)
..+..+||..+++++.++......+.+.|+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999999988763
No 398
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.62 E-value=49 Score=28.17 Aligned_cols=40 Identities=8% Similarity=0.208 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 139 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 139 PsgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-.-|..||+=+.+. .|+. .|+++||+.+|||..||-..+.
T Consensus 10 r~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (183)
T 1zk8_A 10 LQKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHVK 50 (183)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHcC
Confidence 34566666655543 6765 9999999999999999976554
No 399
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.61 E-value=40 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.+|+.+|++.++++.+||.+.++.+.+
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 789999999999999999999999853
No 400
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=27.48 E-value=61 Score=28.22 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~ 178 (490)
.-|.-||+=+-+ -.|+. .|+.+||+.+|||.+||-..+
T Consensus 13 ~~Il~aA~~lf~-~~G~~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 13 EKILQAAIEVIS-EKGLDKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp HHHHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCchHHHHhC
Confidence 345555555444 36765 999999999999999996655
No 401
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=27.44 E-value=13 Score=36.04 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHHHhhh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 203 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~le~ 203 (490)
.+.|++|||+.+|||..|+++.|+.-. .-+.-|-+..+..+++|-.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~--~vs~~tr~rV~~~~~~lgY 48 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQ--QVSEQLREKVMQAVDALAY 48 (339)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC--CCCHHHHHHHHHHHHHhCC
Confidence 357899999999999999999997632 2234444545555444433
No 402
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=27.44 E-value=13 Score=33.70 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred cccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 131 DWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 131 ~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+...||.|.- ....+-.+-.++....|..+||+.+|||.+|+.+.+++-...
T Consensus 133 ~G~~~Gr~~~~-~~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 133 KGRIGGRPPKL-TKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp ------------------------------------------------------
T ss_pred hcccCCCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 34567876642 221221222233344789999999999999999998876543
No 403
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=27.40 E-value=41 Score=25.52 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=21.0
Q ss_pred CHhhHHhHhccCHHHHHHHHHHH
Q 011262 159 SKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
|+.++|+.+|||..||.+.++.-
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhc
Confidence 99999999999999999988653
No 404
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=27.35 E-value=42 Score=29.06 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+-.-|..||+=+.+. .|+ ..|+++||+.+|||..||-..+..
T Consensus 10 ~r~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 10 RRERILAATLDLIAE-EGIARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp HHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHH-hChhhccHHHHHHHhCCCchhhheeCCC
Confidence 344566666655553 676 599999999999999999876653
No 405
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=27.35 E-value=42 Score=31.69 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcccccccccccCCccchHHHHHhhhCCCCcHHHHHH
Q 011262 41 VQASCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQVLYIADESNVLKQVDPSIFLHKFTDRLLPGGNKKVCDT 120 (490)
Q Consensus 41 VaAACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i~~~~~~~~~vdP~~~I~Rf~s~L~~~l~~~V~~~ 120 (490)
+..++-||--.. ..+.++.++|..++++...|.|.|+.. +| ..|..||.+.- | ..
T Consensus 5 ~~~~~~~i~~~~-~~~~~~~~la~~~~~s~~~l~r~f~~~---~g----------~s~~~~~~~~R--l---------~~ 59 (292)
T 1d5y_A 5 IRDLLIWLEGHL-DQPLSLDNVAAKAGYSKWHLQRMFKDV---TG----------HAIGAYIRARR--L---------SK 59 (292)
T ss_dssp HHHHHHHHHTTS-SSSCCCHHHHTTTSSCHHHHHHHHHHH---HS----------SCHHHHHHHHH--H---------HH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCcCHHHHHHHHHHH---HC----------cCHHHHHHHHH--H---------HH
Confidence 444555654333 568999999999999999999876643 33 34666665541 1 12
Q ss_pred HHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccC-HHHHHHHHHHHhcCCCCCCCHHHHHHh
Q 011262 121 ARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHIC-EATLMKRLIEFENTDSGSLTIEDFMAR 197 (490)
Q Consensus 121 A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vs-e~TIrkR~kE~~~t~s~~Lt~~ef~~~ 197 (490)
|.+++.. ...++.+||..+|.+ .....+.++... .+|+.+|++.
T Consensus 60 a~~~L~~----------------------------~~~~i~~ia~~~Gf~~~~~f~r~fk~~~-----g~~P~~~r~~ 104 (292)
T 1d5y_A 60 SAVALRL----------------------------TARPILDIALQYRFDSQQTFTRAFKKQF-----AQTPALYRRS 104 (292)
T ss_dssp HHHHHHH----------------------------CCCCHHHHHHHTTCSCHHHHHHHHHHHH-----SSCHHHHHHC
T ss_pred HHHHHhc----------------------------CCCCHHHHHHHcCCCCHHHHHHHHHHHH-----CcChHHHHHh
Confidence 2222211 234667777777754 456677776663 4677888765
No 406
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=27.26 E-value=63 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~ 178 (490)
-|..||+-+-+ -+|+ ..|+++||+.+|||..||-..+
T Consensus 18 ~Il~aA~~lf~-~~G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 18 EIMQATYRALR-EHGYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp HHHHHHHHHHH-HHTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCChhHHhhhc
Confidence 35555554444 3676 4999999999999999996554
No 407
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=27.22 E-value=37 Score=29.09 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+-+-+ -.|+. .|+.+||+.+|||..||-+.+..
T Consensus 17 ~~Il~aA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 57 (191)
T 4aci_A 17 QEILEGARRCFA-EHGYEGATVRRLEEATGKSRGAIFHHFGD 57 (191)
T ss_dssp HHHHHHHHHHHH-HHHHHHCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHHCCCchHHHHHCCC
Confidence 345555554444 35764 99999999999999999877753
No 408
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=27.18 E-value=47 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-++|+.+|++.++++.+||.+.++.+.+-
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 82 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46999999999999999999999999643
No 409
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.17 E-value=90 Score=28.85 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHhcC---------CCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 37 RTEQVQASCLYLACRQKS---------KPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 37 ~~~~VaAACLYiACR~~~---------~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
+...-+|..|+.-+...+ .|.|..+||+.+|++..++.|+++.|.+.
T Consensus 189 ~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 189 LVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 344445555544444322 47899999999999999999999999885
No 410
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.10 E-value=37 Score=25.01 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=20.7
Q ss_pred CHhhHHhHhccCHHHHHHHHHHHh
Q 011262 159 SKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
++...|+.+||+..|+.++++.+.
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 567889999999999999998763
No 411
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=27.09 E-value=60 Score=25.03 Aligned_cols=41 Identities=2% Similarity=-0.063 Sum_probs=30.8
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
....+|+.++|+.+||+..||.+..+-- ...+++.+..+++
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e~g~-----~~p~~~~l~~la~ 63 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYESGR-----AIPNNQVLGKIER 63 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHTC-----SCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 3456899999999999999998766532 3467777776654
No 412
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=27.05 E-value=62 Score=28.29 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
|.-||+=+-+ -.|+. .|+.+||+.+|||..||-..++
T Consensus 15 Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 15 LMLAALETFY-RKGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 4444444333 36864 8999999999999999976654
No 413
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=26.96 E-value=39 Score=29.98 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhHh-----ccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIV-----HICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~-----~Vse~TIrkR~kE~~~t 184 (490)
..-.||.|+++.+ +||++||++-++++..+
T Consensus 17 ~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~v 51 (149)
T 1b4a_A 17 NDIETQDELVDRLREAGFNVTQATVSRDIKEMQLV 51 (149)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCE
T ss_pred CCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCe
Confidence 3558999999999 99999999999999644
No 414
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.91 E-value=75 Score=24.84 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=28.2
Q ss_pred hcCCCcCHHHHHHHhCcCHHH-HHHHHHHHHHH
Q 011262 52 QKSKPFLLIDFSNYLNINVYE-LGAVYLQLCQV 83 (490)
Q Consensus 52 ~~~~prtL~DIa~v~~vsv~~-Lgr~yk~L~~~ 83 (490)
.++-+.++.|||..++++..+ +.+....|.+.
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 455579999999999999999 99999999885
No 415
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=26.91 E-value=43 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHH-HHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYV-SALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALyl-Aar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..|++-+ .+ -.|+ ..|+++||+.+||+.+|+-..|+.
T Consensus 23 ~I~~Aa~~lF~~-~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~ 63 (185)
T 3o60_A 23 KLYTVLERFYVE-DRTFESISIKDLCEQARVSRATFYRHHKE 63 (185)
T ss_dssp HHHHHHHHHHHT-TCCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-cCCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 344555544 22 3576 499999999999999999776643
No 416
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=26.88 E-value=62 Score=28.78 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
.-|..||+=+.+ -.|+. .|+++||+.+|||..||-..+.
T Consensus 38 ~~Il~aA~~lf~-~~G~~~~t~~~IA~~AGvs~~tlY~~F~ 77 (221)
T 3g7r_A 38 ARLLGTATRIFY-AEGIHSVGIDRITAEAQVTRATLYRHFS 77 (221)
T ss_dssp HHHHHHHHHHHH-HHCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 345555555544 35765 9999999999999999977654
No 417
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.84 E-value=83 Score=28.51 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=26.2
Q ss_pred CcCHHHHHHHhCcCH-HHHHHHHHHHHHH
Q 011262 56 PFLLIDFSNYLNINV-YELGAVYLQLCQV 83 (490)
Q Consensus 56 prtL~DIa~v~~vsv-~~Lgr~yk~L~~~ 83 (490)
|.|..+||+.+|++. .++.|+.+.|.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 789999999999999 7999999999875
No 418
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=26.80 E-value=41 Score=28.22 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=20.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~ 84 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 67999999999999999999999988643
No 419
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=26.70 E-value=49 Score=29.01 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+.+ -.|+. .|+.+||+.+|||..||-+.+..
T Consensus 7 ~Il~aA~~lf~-~~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 7 KIIQASLELFN-EHGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 34455554444 36876 99999999999999999776643
No 420
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=26.66 E-value=38 Score=26.23 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|..+|||..||.+.-+ .....+++.+..+++
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~-----G~~~p~~~~l~~ia~ 64 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET-----RERRLDVIEFAKWMA 64 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT-----TSSCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC-----CCCCCCHHHHHHHHH
Confidence 568999999999999999987532 223567777776653
No 421
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.60 E-value=40 Score=31.84 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.6
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
...|.++||+.+|+|+.||+.++.-...
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5679999999999999999999887753
No 422
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=26.46 E-value=56 Score=29.12 Aligned_cols=47 Identities=9% Similarity=-0.032 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHhc---------CCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 37 RTEQVQASCLYLACRQK---------SKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 37 ~~~~VaAACLYiACR~~---------~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
+...-.|..|+.-++.. ..|.+..+||+.+|++..++.|..+.|.+.
T Consensus 159 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 159 DVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 44444555554444432 246899999999999999999999999885
No 423
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=26.43 E-value=43 Score=32.22 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=26.3
Q ss_pred cCCCC-CHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 154 HGLKF-SKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 154 ~g~~~-t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
.|.++ |..++|+..|||..|||+.|..+..
T Consensus 49 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 79 (272)
T 3eet_A 49 PHTRLPSQARIREEYGVSDTVALEARKVLMA 79 (272)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677 7999999999999999999999953
No 424
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=26.37 E-value=41 Score=31.37 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=24.5
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||+..+||+.||+..++.+.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 558899999999999999999998875
No 425
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=26.34 E-value=30 Score=29.49 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+-+.+ -.|+ ..|+.+||+.+|||..||-+.+..
T Consensus 12 ~Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 12 AFLEATVREVA-DHGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHHHHH-HHHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 34444444433 3565 499999999999999999876644
No 426
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.30 E-value=59 Score=26.17 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=25.5
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
+..+++++|+..++++..||.+.++-|.
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE 61 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLE 61 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3469999999999999999999999984
No 427
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=26.29 E-value=47 Score=28.87 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+-+ -.|+. .|+.+||+.+|||..||-+.+..
T Consensus 12 ~Il~aA~~lf~-~~G~~~~t~~~IA~~agvs~~tlY~~F~s 51 (199)
T 2o7t_A 12 HIITTTCNLYR-THHHDSLTMENIAEQAGVGVATLYRNFPD 51 (199)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HCCCccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 34445554444 36765 89999999999999999877643
No 428
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=26.27 E-value=49 Score=29.42 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+-+ -+|+. .|+++||+.+|||..||-+.+..
T Consensus 8 ~~Il~aA~~lf~-~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 8 DKILLSSLELFN-DKGERNITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp HHHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-HhChhhcCHHHHHHHhCCCCccchhcCCC
Confidence 345555555544 35875 99999999999999999777654
No 429
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=26.24 E-value=42 Score=33.63 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=27.6
Q ss_pred hcCCCCCHhhHHhHh--ccCHHHHHHHHHHHhc
Q 011262 153 THGLKFSKSDIVKIV--HICEATLMKRLIEFEN 183 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~--~Vse~TIrkR~kE~~~ 183 (490)
..+.+++.+++++.. +||+.|||+=+.++.+
T Consensus 32 ~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~ 64 (338)
T 1stz_A 32 ENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEY 64 (338)
T ss_dssp HHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHH
T ss_pred HcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 356889999999999 9999999999999854
No 430
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=26.23 E-value=63 Score=30.19 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 137 RKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 137 R~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
+.+.-+.-+.-||-.... .++|+.++|+.+|+|..++.+.++++ .+|+-+|....
T Consensus 166 ~~~~~~~~~~~~i~~~~~-~~~sl~~lA~~~~~S~~~l~r~fk~~------G~t~~~~l~~~ 220 (276)
T 3gbg_A 166 DDLDAMEKISCLVKSDIT-RNWRWADICGELRTNRMILKKELESR------GVKFRELINSI 220 (276)
T ss_dssp CTTCHHHHHHHHHHHTTT-SCCCHHHHHHHHTCCHHHHHHHHHTT------TCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhc-CCCCHHHHHHHHCcCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 344455555666655444 48999999999999999999999754 36778886653
No 431
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=26.23 E-value=66 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+.+. .|+. .|+++||+.+|||..||-+.+.
T Consensus 34 ~Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 72 (230)
T 2iai_A 34 TLLSVAVQVFIE-RGYDGTSMEHLSKAAGISKSSIYHHVT 72 (230)
T ss_dssp CHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHHCCChhHHHHhCC
Confidence 355555555543 5765 9999999999999999965543
No 432
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=26.15 E-value=49 Score=28.98 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 15 ~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2xdn_A 15 QIIEAAERAFY-KRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHHHHHHH-HHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHHHHHHHH-HcCcccCcHHHHHHHHCCChHHHHHHhC
Confidence 35555554444 35865 9999999999999999977664
No 433
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=26.03 E-value=64 Score=26.81 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=23.7
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHh
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVL 84 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L 84 (490)
+-++|.++||..+|++..+|.|. +...+.+
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~l 85 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKAA 85 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHHS
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHHc
Confidence 34699999999999999999998 4444443
No 434
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=25.96 E-value=46 Score=29.18 Aligned_cols=30 Identities=3% Similarity=0.056 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.-+.++.+|++.++++.+||.+.++.+.+.
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999644
No 435
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.95 E-value=1.2e+02 Score=25.87 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=25.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 87 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 37999999999999999999999998543
No 436
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=25.94 E-value=53 Score=29.56 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHhHhc--cCHHHHHHHHHHHh
Q 011262 141 GLCGAALYVSALTHGLKFSKSDIVKIVH--ICEATLMKRLIEFE 182 (490)
Q Consensus 141 gIaaAALylAar~~g~~~t~~dIa~v~~--Vse~TIrkR~kE~~ 182 (490)
++.=|+||++ +.++|..+++++++ ++..+|+..+.++.
T Consensus 10 ~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 10 RSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 4555666653 78999999999999 99999999999996
No 437
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=25.94 E-value=45 Score=30.82 Aligned_cols=30 Identities=7% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+++.+||+.++|+.+|+++.++.+.+-
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 456999999999999999999999998643
No 438
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=25.84 E-value=46 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+-+.+ -+|+ ..|+++||+.+||+..||-+.+..
T Consensus 48 ~Il~aA~~lf~-e~G~~~~t~~~IA~~aGvs~~tlY~~F~s 87 (236)
T 3q0w_A 48 AILATAENLLE-DRPLADISVDDLAKGAGISRPTFYFYFPS 87 (236)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCcHHHHHHHCCC
Confidence 35555555544 3687 699999999999999999876643
No 439
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=25.77 E-value=51 Score=27.76 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+-.+|+.+|++.++++.+||.+.++.+..
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999998853
No 440
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=25.72 E-value=37 Score=28.60 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|..||+=+-+ -.|+. .|+.+||+.+|||..||-+.+..
T Consensus 9 Il~aa~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 9 IIEAALRLYM-KKPPHEVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp HHHHHHHHHT-TSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHH-hcCCccCcHHHHHHHhCCCchhHHHHcCC
Confidence 3444443333 46764 99999999999999999876644
No 441
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=25.68 E-value=1.1e+02 Score=25.14 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=23.3
Q ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 56 PFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 56 prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
|.+..|||+.++++..++.+....|.+.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999999885
No 442
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.68 E-value=1.2e+02 Score=25.09 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+|++.++++.+|+.+.++.+.+-
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 457999999999999999999999998643
No 443
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.68 E-value=88 Score=27.32 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..+.
T Consensus 15 ~Il~aA~~lF~-~~Gy~~ts~~~IA~~aGvsk~tlY~~F~ 53 (202)
T 2i10_A 15 VALQTAMELFW-RQGYEGTSITDLTKALGINPPSLYAAFG 53 (202)
T ss_dssp HHHHHHHHHHH-HHTTTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHH-HhCcccCCHHHHHHHhCCChHHHHHHhC
Confidence 34444444433 36876 8999999999999999977764
No 444
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=25.57 E-value=42 Score=28.69 Aligned_cols=39 Identities=18% Similarity=-0.012 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
|..||+=+-+. +|+. .|+++||+.+|||..||-..+..-
T Consensus 12 Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK 51 (186)
T 2jj7_A 12 ILKAAKKKFGE-RGYEGTSIQEIAKEAKVNVAMASYYFNGK 51 (186)
T ss_dssp HHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCChhhhhhhcCCH
Confidence 44444443332 5765 999999999999999998877543
No 445
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=25.51 E-value=31 Score=29.19 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+=+-+ -+|+. .|+++||+.+|||..||-+.+..
T Consensus 18 ~Il~aa~~lf~-~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 18 KIMDAVVDQLL-RLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHHHHHHHHHH-HTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-HhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 45555554443 36765 99999999999999999776643
No 446
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=25.38 E-value=42 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.6
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|.+++..++|+..|||..|||..++.+.
T Consensus 32 pG~~L~e~~La~~lgVSRtpVREAL~~L~ 60 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVRDALLQLA 60 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCEeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47889999999999999999999999884
No 447
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.35 E-value=53 Score=27.94 Aligned_cols=30 Identities=7% Similarity=0.131 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-.+|+.+|++.++++.+||.+.++.+.+-
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 91 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDE 91 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999999998643
No 448
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=25.31 E-value=44 Score=27.75 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 146 ALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+|++.....+-.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
No 449
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=25.24 E-value=55 Score=26.76 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred CHhhHHhHhccCHHHHHHHHHHH
Q 011262 159 SKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
.+...|+.+||+..|++++++.+
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 46678999999999999999876
No 450
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=25.17 E-value=67 Score=32.23 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=28.0
Q ss_pred hcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 153 THGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 153 ~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+-++|..+|++.+++|.+||.+++++|.+.
T Consensus 26 ~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 26 DQLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34567999999999999999999999999753
No 451
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=25.17 E-value=54 Score=23.71 Aligned_cols=39 Identities=5% Similarity=-0.044 Sum_probs=29.7
Q ss_pred CCCCHhhHHhHhc--cCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVH--ICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~--Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+| |+..||.+..+- ....+++.+..+++
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g-----~~~~~~~~l~~la~ 60 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG-----DRAVTVQRLAELAD 60 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT-----CSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC-----CCCCCHHHHHHHHH
Confidence 4589999999999 999999876543 23467777777754
No 452
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.08 E-value=69 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|.-||+=+.+ -.|+. .|+.+||+.+||+..||-..+..
T Consensus 45 Il~aA~~lf~-~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 83 (225)
T 2id3_A 45 VLLAAGDALA-ADGFDALDLGEIARRAGVGKTTVYRRWGT 83 (225)
T ss_dssp HHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 4444443333 35765 99999999999999999777654
No 453
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=25.06 E-value=34 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+.+. .|+. .|+++||+.+|||..||-+.+..
T Consensus 16 ~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~s 56 (217)
T 3nrg_A 16 SRLIDVLLDEFAQ-NDYDSVSINRITERAGIAKGSFYQYFAD 56 (217)
T ss_dssp HHHHHHHHHHHHH-SCGGGCCHHHHHHHHTCCTTGGGGTCSS
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHcCC
Confidence 3455555555443 7875 99999999999999999765543
No 454
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=25.00 E-value=41 Score=27.56 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...||.++|+.+||+..||.+.= .++.+++-+..++.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E-------~G~~~~~~l~~i~~ 84 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAE-------KGKVQLDIMIAILM 84 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH-------TTCCBHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHH-------CCCCCHHHHHHHHH
Confidence 56899999999999999998642 34567776666643
No 455
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.91 E-value=74 Score=27.74 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~ 178 (490)
|..||+=+-+ -.|+ ..|+.+||+.+|||.+||-..+
T Consensus 17 Il~aA~~lf~-~~Gy~~ts~~~IA~~agvs~gtlY~yF 53 (205)
T 1rkt_A 17 ILEAAKTVFK-RKGFELTTMKDVVEESGFSRGGVYLYF 53 (205)
T ss_dssp HHHHHHHHHH-HHCSTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHH-HcCcccCCHHHHHHHHCCCcchhhhhC
Confidence 4444444333 3587 4999999999999999996544
No 456
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.75 E-value=43 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.2
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|+.+||+..||.+..+- ....+++.+..+++
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g-----~~~~~~~~l~~ia~ 67 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG-----INALNAYNAALLAK 67 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT-----SSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHHH
Confidence 4589999999999999999876642 23466777666653
No 457
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=24.60 E-value=76 Score=26.98 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.7
Q ss_pred hcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 153 THGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 153 ~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-+|+. .|+.+||+.+|||.+||-..+.
T Consensus 17 ~~Gy~~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 17 EKGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HcCCccCCHHHHHHHhCCCcHHHHHHcC
Confidence 36864 9999999999999999976653
No 458
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.57 E-value=69 Score=29.45 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|.-||+=+.+. .|+. .|+.+||+.+|||..||-..|..
T Consensus 53 Il~AA~~lf~e-~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 53 IRAATYGLIRQ-QGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-hCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 45555544443 5765 99999999999999999877654
No 459
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=24.53 E-value=93 Score=25.51 Aligned_cols=39 Identities=5% Similarity=-0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCcCHHHHHH-HhCcCHHHHHHHHHHHHHH
Q 011262 44 SCLYLACRQKSKPFLLIDFSN-YLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 44 ACLYiACR~~~~prtL~DIa~-v~~vsv~~Lgr~yk~L~~~ 83 (490)
..|.+....++ +.|+.||++ ..+++..+++|..+.|.+.
T Consensus 19 fsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~ 58 (95)
T 1bja_A 19 ATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKK 58 (95)
T ss_dssp HHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHC
Confidence 34445555666 999999999 9999999999999999886
No 460
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.40 E-value=32 Score=28.25 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=26.4
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-++|+.+|++.++++.+|+.+.++.+.+-
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 347999999999999999999999998643
No 461
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.40 E-value=20 Score=31.16 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
..+..+||+.++|+..||++.++.+..+
T Consensus 41 G~s~~~IA~~lgis~~TV~rwl~r~~~~ 68 (159)
T 2k27_A 41 GVRPCDISRQLRVSHGCVSKILGRYYET 68 (159)
T ss_dssp TCCHHHHHHHHTCCSHHHHHHHCCSSTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 3789999999999999999999887543
No 462
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=24.27 E-value=46 Score=26.39 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.8
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
..+|+.++|+.+||+..||.+.-+
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 468999999999999999987643
No 463
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=24.04 E-value=63 Score=28.63 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 146 ALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 146 ALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
.+|||. ..+.++|.++||+..+|+...|++-+..+...
T Consensus 18 l~~La~-~~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 18 ILYLDA-HRDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHT-TTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345554 34667999999999999999999999998643
No 464
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=24.00 E-value=1.6e+02 Score=25.96 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=30.0
Q ss_pred ccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHH
Q 011262 130 RDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 130 ~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
..+...||.|..-. --|| .+.....|..+||+.+||+.+||.+.++
T Consensus 135 ~~G~~~Gr~~~~~~-~~i~---~~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 135 AKGVVFGRKRKIDR-DAVL---NMWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHTCCCSSCCCSCH-HHHH---HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCcCCCCCCCCH-HHHH---HHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34556687653211 1222 2222346999999999999999998775
No 465
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=23.84 E-value=1e+02 Score=27.71 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 46 LYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 46 LYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
|.-..+.+|.|.|+.|||..++++..++.+..+.|.+.
T Consensus 14 I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 33345678999999999999999988877766666664
No 466
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.83 E-value=90 Score=26.76 Aligned_cols=40 Identities=10% Similarity=0.054 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 44 SCLYLACRQKSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 44 ACLYiACR~~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.+|++.....+-+.+..+|++.++++..++.+....|.+.
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 89 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR 89 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 3444444444578999999999999999999999999885
No 467
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.82 E-value=17 Score=35.34 Aligned_cols=46 Identities=24% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHHHhhh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 203 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~le~ 203 (490)
-+.|++|||+.+|||..|+++.|+.- ..-+.-|-+..+..+++|-.
T Consensus 5 ~~~ti~diA~~agVS~~TVSr~Ln~~--~~vs~~tr~rV~~~a~~lgY 50 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGK--GYVSPQTREKVQAAAKELNY 50 (333)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHCC
Confidence 35789999999999999999999852 22234444444444444433
No 468
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=23.82 E-value=77 Score=27.48 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 142 IaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
|.-||+-+-+ -+|+ ..|+.+||+.+|||..||-..++.
T Consensus 17 Il~aA~~lf~-~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 55 (197)
T 2hyt_A 17 LLATARKVFS-ERGYADTSMDDLTAQASLTRGALYHHFGD 55 (197)
T ss_dssp HHHHHHHHHH-HHCTTTCCHHHHHHHHTCCTTHHHHHHSS
T ss_pred HHHHHHHHHH-HhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4444443333 3586 499999999999999999877643
No 469
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=23.80 E-value=19 Score=31.46 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=23.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
...|.++||...|||+.||++++....
T Consensus 150 ~g~s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 150 GDLTHRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp SCCSSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457899999999999999999887653
No 470
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=23.78 E-value=93 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.013 Sum_probs=28.1
Q ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHHhcc
Q 011262 54 SKPFLLIDFSNYLNINVYELGAVYLQLCQVLYI 86 (490)
Q Consensus 54 ~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~L~i 86 (490)
.-..++.|+|..++|+..+|.+-...|.+.=.+
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 446899999999999999999999998886433
No 471
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=23.67 E-value=17 Score=35.51 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHHHhh
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELH 202 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~le 202 (490)
+.|++|||+.+|||.+|+++.|+.-.. -+.-|-+..+..+++|-
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~~~--vs~~tr~rV~~~a~~lg 46 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQASH--VSAKTREKVEAAMAELN 46 (349)
T ss_dssp ----------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHC
Confidence 368999999999999999999986531 23334444444443333
No 472
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=23.60 E-value=1.2e+02 Score=25.99 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=38.8
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHhCcCHH-HHHHHHHHHHHHhcccc
Q 011262 32 FTKGRRTEQVQASCLYLACRQKSKPFLLIDFSNYLNINVY-ELGAVYLQLCQVLYIAD 88 (490)
Q Consensus 32 ~~rGR~~~~VaAACLYiACR~~~~prtL~DIa~v~~vsv~-~Lgr~yk~L~~~L~i~~ 88 (490)
+++........+|||.++|+..|.+.++.++...++++.. .--..+..+.+.+|+..
T Consensus 8 ~~~Q~~~~dcglacLa~i~~~~g~~~s~~~L~~~~~~~~~g~s~~~l~~~a~~~Gl~a 65 (156)
T 3k8u_A 8 LVPQIDTRDCGPAVLASVAKHYGSNYSIAYLRELSKTNKQGTTALGIVEAAKKLGFET 65 (156)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHTTCCCCHHHHHHHTTCBTTBCCHHHHHHHHHHTTEEE
T ss_pred eEECCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHcCCCCCCcCHHHHHHHHHHCCCee
Confidence 4555566678899999999999999999999887754321 11122344566666653
No 473
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=23.58 E-value=45 Score=26.84 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.5
Q ss_pred CCCHhhHHhHhccCHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
.++|.++|+.+||++.||..-.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 78999999999999999987654
No 474
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=23.50 E-value=44 Score=28.53 Aligned_cols=30 Identities=7% Similarity=0.073 Sum_probs=26.2
Q ss_pred CCCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 155 GLKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 155 g~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
+-++|+.+|++.++++.+||.+.++.+..-
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~ 78 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRS 78 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 446899999999999999999999988543
No 475
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.44 E-value=61 Score=28.53 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|.-||+=+-+ -.|+. .|+.+||+.+|||.+||-+.++
T Consensus 12 ~Il~aA~~lf~-~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~ 50 (206)
T 1vi0_A 12 QIIDAAVEVIA-ENGYHQSQVSKIAKQAGVADGTIYLYFK 50 (206)
T ss_dssp HHHHHHHHHHH-HHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HhCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 34455554444 36874 9999999999999999976653
No 476
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.39 E-value=17 Score=35.07 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHHHhhh
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKKELHE 203 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~~le~ 203 (490)
..|++|||+.+|||.+|+.+.|+.-. .-+.=|-+..+..+++|-.
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~~~--~vs~~tr~rV~~~a~~lgY 47 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNG--YVSQETKDRVFQAVEESGY 47 (338)
T ss_dssp -----------------------------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHCC
Confidence 36899999999999999999998632 2233444445555444443
No 477
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=23.36 E-value=69 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=26.1
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
-..|+.+||+.++++.+|+.++++.+.+.
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~ 193 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKF 193 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46999999999999999999999999643
No 478
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=23.35 E-value=1.2e+02 Score=23.41 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=26.3
Q ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 55 KPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 55 ~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
-+.+..+|++.++++..++.+....|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998874
No 479
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=23.17 E-value=84 Score=27.37 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~ 178 (490)
-|.-||+=+-+ -+|+. .|+.+||+.+|||..||-..+
T Consensus 13 ~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvsk~tlY~~F 50 (203)
T 3cdl_A 13 SIVQAAIAEFG-DRGFEITSMDRIAARAEVSKRTVYNHF 50 (203)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHTTSCHHHHHTTS
T ss_pred HHHHHHHHHHH-HcCchhcCHHHHHHHhCCCHHHHHHHC
Confidence 45555554444 36874 999999999999999996654
No 480
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=23.07 E-value=49 Score=28.53 Aligned_cols=40 Identities=28% Similarity=0.353 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 140 SGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 140 sgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
.-|..||+=+.+ -.|+ ..|+.+||+.+|||..||-..+..
T Consensus 11 ~~Il~AA~~l~~-~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 51 (195)
T 3frq_A 11 DEVLEAATVVLK-RCGPIEFTLSGVAKEVGLSRAALIQRFTN 51 (195)
T ss_dssp HHHHHHHHHHHH-HHHHHHCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHH-hhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 345555554444 3576 599999999999999999877754
No 481
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=23.02 E-value=84 Score=27.62 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHH
Q 011262 139 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRL 178 (490)
Q Consensus 139 PsgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~ 178 (490)
-.-|..||+=+-+ -+|+. .|+.+||+.+|||..||-..+
T Consensus 13 r~~Il~aA~~lf~-~~G~~~~s~~~IA~~aGvskgtlY~~F 52 (219)
T 2w53_A 13 REGILDAAEACFH-EHGVARTTLEMIGARAGYTRGAVYWHF 52 (219)
T ss_dssp HHHHHHHHHHHHH-HHCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred HHHHHHHHHHHHH-HhCcccCCHHHHHHHhCCCchHHhhcC
Confidence 3455555555544 46865 999999999999999996655
No 482
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=22.90 E-value=18 Score=35.36 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
..|++|||+.+|||..|+++.|+.-
T Consensus 12 ~~ti~diA~~agVS~~TVSr~Ln~~ 36 (355)
T 3e3m_A 12 PVTMRDVAKAAGVSRMTVSRALKKD 36 (355)
T ss_dssp -------------------------
T ss_pred CCcHHHHHHHhCCCHHHHHHHHCCC
Confidence 4789999999999999999999754
No 483
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=22.88 E-value=82 Score=28.37 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
+-.-|..||+=+.....|+ ..|+++|++.+||+..||-..++.
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 49 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKN 49 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCC
Confidence 4455666776666643276 499999999999999999766543
No 484
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=22.87 E-value=1.4e+02 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.4
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
...|..+||+.+||+.+|+.+.++..
T Consensus 174 ~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 174 EGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 34799999999999999999887654
No 485
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.86 E-value=63 Score=28.26 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+-+ -+|+. .|+++||+.+|||..||-..+.
T Consensus 13 ~Il~AA~~lf~-~~G~~~~s~~~IA~~AGvs~gtlY~~F~ 51 (203)
T 2np5_A 13 RLAAALFDVAA-ESGLEGASVREVAKRAGVSIGAVQHHFS 51 (203)
T ss_dssp HHHHHHHHHHH-HHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HhChhhccHHHHHHHhCCCHHHHHHHcC
Confidence 35555554444 36865 9999999999999999976653
No 486
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=22.63 E-value=1.2e+02 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=28.2
Q ss_pred cCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 53 KSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 53 ~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.|.+.+..+||+.++++..++.+.+..|...
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5667899999999999999999999999885
No 487
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.58 E-value=49 Score=25.82 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=28.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARK 198 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~ 198 (490)
..+|+.++|+.+||+..||.+..+- ....+++.+..++
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g-----~~~p~~~~l~~ia 53 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG-----RSTPPTDVMMNIL 53 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT-----SSCCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC-----CCCCCHHHHHHHH
Confidence 4579999999999999999875432 2345677776664
No 488
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=22.57 E-value=73 Score=28.63 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHH
Q 011262 139 PSGLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 139 PsgIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
..-|..||+=+... .|+. .|+++||+.+||+..||-+.+..
T Consensus 4 r~~Il~aA~~l~~~-~G~~~~s~~~IA~~aGvs~~tlY~hf~~ 45 (209)
T 3bqy_A 4 RARTVQTALDLLNE-SGLDTLTMRRLAQAMDVQAGALYRYFAA 45 (209)
T ss_dssp HHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCcchHHhhcCC
Confidence 34566667666654 5764 99999999999999999776643
No 489
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.56 E-value=18 Score=35.30 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 157 KFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 157 ~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
..|++|||+.+|||..|+++.|+.-
T Consensus 8 ~~ti~dvA~~aGVS~~TVSrvLn~~ 32 (348)
T 3bil_A 8 RPTLKDVARQAGVSIATASRALADN 32 (348)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCC
Confidence 3689999999999999999999864
No 490
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=22.55 E-value=84 Score=27.85 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+-+-+ -.|+ ..|+.+||+.+|||..||-..+.
T Consensus 13 ~Il~aA~~lf~-~~Gy~~ts~~~IA~~AGvskgtlY~~F~ 51 (215)
T 1ui5_A 13 TIIGAAADLFD-RRGYESTTLSEIVAHAGVTKGALYFHFA 51 (215)
T ss_dssp HHHHHHHHHHH-HHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HhCcccCCHHHHHHHhCCCchhhHhhCC
Confidence 45555554444 3586 59999999999999999977664
No 491
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=22.53 E-value=2.4e+02 Score=22.99 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccccCCChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 117 VCDTARDILASMKRDWITTGRKPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 117 V~~~A~~Iv~~~~~~~l~~GR~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
+......+.+.+....-..|=.|.-...=.++... -.+|+.+|++.++++.+|+.+.++.+.+
T Consensus 15 l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~~----~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 15 VNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEAN----EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHHHH----SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHc----CCcCHHHHHHHHCCCHhhHHHHHHHHHH
No 492
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=22.52 E-value=53 Score=31.32 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.9
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhc
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFEN 183 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~ 183 (490)
...|.++||+..+||+.||+..++.+..
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~ 238 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIR 238 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4688999999999999999999988853
No 493
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=22.51 E-value=60 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLI 179 (490)
Q Consensus 141 gIaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~k 179 (490)
-|..||+=+-+ -.|+. .|+.+||+.+|||..||-+.+.
T Consensus 26 ~Il~AA~~lf~-e~G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 26 RMLEAAIELAT-EKELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp HHHHHHHHHHH-HSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-HcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 34455554444 36875 8999999999999999977654
No 494
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=22.51 E-value=52 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=26.5
Q ss_pred cCCCCCHhhHHhHhccCHHHHHHHHHHHh
Q 011262 154 HGLKFSKSDIVKIVHICEATLMKRLIEFE 182 (490)
Q Consensus 154 ~g~~~t~~dIa~v~~Vse~TIrkR~kE~~ 182 (490)
.|.+++..++|+.+|||..|||..++.+.
T Consensus 48 pG~~L~e~~La~~lgVSRtpVREAL~~L~ 76 (239)
T 2hs5_A 48 PGARLSEPDICAALDVSRNTVREAFQILI 76 (239)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCEeCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46788999999999999999999999985
No 495
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=22.45 E-value=82 Score=28.51 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCC-CCCHhhHHhHhccCHHHHHHHHHH
Q 011262 141 GLCGAALYVSALTHGL-KFSKSDIVKIVHICEATLMKRLIE 180 (490)
Q Consensus 141 gIaaAALylAar~~g~-~~t~~dIa~v~~Vse~TIrkR~kE 180 (490)
-|..||+-+-+. .|+ ..|+.+||+.+|||..||-..+..
T Consensus 27 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~s 66 (231)
T 2zcx_A 27 AILDAARELGTE-RGIREITLTDIAATVGMHKSALLRYFET 66 (231)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 455555555443 676 599999999999999999776543
No 496
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=22.44 E-value=71 Score=26.50 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=23.9
Q ss_pred CHhhHHhHhccCHHHHHHHHHHHhcC
Q 011262 159 SKSDIVKIVHICEATLMKRLIEFENT 184 (490)
Q Consensus 159 t~~dIa~v~~Vse~TIrkR~kE~~~t 184 (490)
|+.+|++.++++.+||.+.++.+.+-
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 99999999999999999999998643
No 497
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=22.39 E-value=59 Score=26.26 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=29.3
Q ss_pred CCCCHhhHHhHhccCHHHHHHHHHHHhcCCCCCCCHHHHHHhHH
Q 011262 156 LKFSKSDIVKIVHICEATLMKRLIEFENTDSGSLTIEDFMARKK 199 (490)
Q Consensus 156 ~~~t~~dIa~v~~Vse~TIrkR~kE~~~t~s~~Lt~~ef~~~~~ 199 (490)
...|+.++|..+||+..||.+..+-- ...+++.+..+++
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g~-----~~p~~~~l~~la~ 59 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSGE-----TKPDIEKLIRLAT 59 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHTS-----SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcCC-----CCCCHHHHHHHHH
Confidence 35799999999999999999876532 2356676666653
No 498
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=22.36 E-value=2.1e+02 Score=23.44 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=28.2
Q ss_pred cCCCcCHHHHHHHhCcCHHHHHHHHHHHHHH
Q 011262 53 KSKPFLLIDFSNYLNINVYELGAVYLQLCQV 83 (490)
Q Consensus 53 ~~~prtL~DIa~v~~vsv~~Lgr~yk~L~~~ 83 (490)
.+-+.++.|||..++++..++.+.++.|.+.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 4668899999999999999999999999875
No 499
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=22.19 E-value=83 Score=29.57 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHhcCCCCCHhhHHhHhccCHHHHHHHHHHH
Q 011262 138 KPSGLCGAALYVSALTHGLKFSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 138 ~PsgIaaAALylAar~~g~~~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
+|.-.|-+.--+. .+..|+.+||+.+|+|..||+++++-+
T Consensus 119 ~~~E~a~~~~~l~----~~g~t~~~iA~~lG~s~~~V~~~l~l~ 158 (230)
T 1vz0_A 119 SPVEEARGYQALL----EMGLTQEEVARRVGKARSTVANALRLL 158 (230)
T ss_dssp CHHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554433222 456899999999999999999988765
No 500
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=22.18 E-value=40 Score=29.03 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCC-CCHhhHHhHhccCHHHHHHHHHHH
Q 011262 142 LCGAALYVSALTHGLK-FSKSDIVKIVHICEATLMKRLIEF 181 (490)
Q Consensus 142 IaaAALylAar~~g~~-~t~~dIa~v~~Vse~TIrkR~kE~ 181 (490)
|..||+=+.+ -.|+. .|+++||+.+|||..||-+.+..-
T Consensus 25 Il~aA~~l~~-~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K 64 (203)
T 3mnl_A 25 ILDATMAIAS-KGGYEAVQMRAVADRADVAVGTLYRYFPSK 64 (203)
T ss_dssp HHHHHHHHHH-HHHHHHCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHH-HcCCccCCHHHHHHHcCCChhHHHHHcCCH
Confidence 4444443333 35764 999999999999999998776543
Done!