Query 011264
Match_columns 490
No_of_seqs 259 out of 2109
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.3E-57 5E-62 445.9 55.0 438 35-476 12-453 (455)
2 PRK10189 MATE family multidrug 100.0 1.6E-52 3.5E-57 415.6 55.8 432 37-471 26-467 (478)
3 PRK00187 multidrug efflux prot 100.0 1.7E-51 3.7E-56 408.4 55.8 427 36-465 6-443 (464)
4 PRK01766 multidrug efflux prot 100.0 8.7E-50 1.9E-54 397.8 56.0 435 33-470 5-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 6.6E-50 1.4E-54 396.6 52.9 423 37-465 9-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 4.3E-49 9.2E-54 387.6 53.7 424 36-470 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 7.7E-37 1.7E-41 309.5 53.0 413 42-466 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 7.5E-37 1.6E-41 308.6 47.7 415 43-466 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 2.3E-36 4.9E-41 290.8 43.0 338 48-388 1-341 (342)
10 PRK15099 O-antigen translocase 100.0 4.7E-35 1E-39 288.4 47.4 405 42-465 3-411 (416)
11 KOG1347 Uncharacterized membra 100.0 6E-36 1.3E-40 291.4 34.0 445 36-482 24-468 (473)
12 PF03023 MVIN: MviN-like prote 100.0 4E-29 8.7E-34 246.3 50.7 386 70-466 5-403 (451)
13 PRK10459 colanic acid exporter 100.0 3.9E-28 8.5E-33 244.8 46.9 398 39-465 4-404 (492)
14 COG0728 MviN Uncharacterized m 100.0 3.6E-27 7.7E-32 227.9 50.5 420 40-467 7-438 (518)
15 COG2244 RfbX Membrane protein 100.0 6.1E-26 1.3E-30 228.4 41.9 391 38-450 4-396 (480)
16 COG0534 NorM Na+-driven multid 99.9 4.9E-21 1.1E-25 188.8 28.8 210 256-468 12-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 8E-21 1.7E-25 187.3 28.0 207 257-465 5-211 (441)
18 PRK00187 multidrug efflux prot 99.9 1.3E-20 2.8E-25 187.6 28.1 206 256-465 5-214 (464)
19 PRK10189 MATE family multidrug 99.9 1.5E-20 3.2E-25 187.2 27.8 205 257-464 25-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 2.2E-20 4.8E-25 185.6 26.5 209 256-466 7-215 (453)
21 PRK01766 multidrug efflux prot 99.9 7.7E-20 1.7E-24 182.6 29.1 209 256-467 7-219 (456)
22 TIGR01695 mviN integral membra 99.8 3.2E-17 7E-22 166.2 31.4 204 36-241 219-427 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.5E-16 3.2E-21 147.9 32.0 270 43-329 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 5.6E-17 1.2E-21 156.0 25.8 194 269-465 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.8 2E-15 4.4E-20 149.2 30.6 205 37-243 195-404 (451)
26 PF01554 MatE: MatE; InterPro 99.7 2.9E-18 6.3E-23 146.0 8.2 162 269-432 1-162 (162)
27 TIGR02900 spore_V_B stage V sp 99.7 4.7E-16 1E-20 157.2 24.4 202 35-241 220-433 (488)
28 PF01554 MatE: MatE; InterPro 99.7 7.2E-18 1.6E-22 143.5 6.6 160 48-208 1-162 (162)
29 COG0728 MviN Uncharacterized m 99.7 6.8E-14 1.5E-18 136.1 34.3 205 37-243 229-438 (518)
30 PRK10459 colanic acid exporter 99.7 1.4E-13 3E-18 139.2 34.4 200 36-241 203-404 (492)
31 PF13440 Polysacc_synt_3: Poly 99.7 4.6E-13 1E-17 122.8 30.7 247 58-328 2-250 (251)
32 PRK15099 O-antigen translocase 99.6 4.8E-14 1E-18 139.2 24.9 199 35-240 210-410 (416)
33 COG2244 RfbX Membrane protein 99.6 2.5E-13 5.5E-18 136.9 25.7 187 35-227 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.5 3.6E-10 7.8E-15 112.6 33.3 420 43-465 4-469 (549)
35 KOG2864 Nuclear division RFT1 99.3 3E-08 6.6E-13 92.4 34.7 419 38-466 6-449 (530)
36 KOG1347 Uncharacterized membra 99.3 3.5E-10 7.5E-15 111.3 20.4 205 257-465 24-229 (473)
37 PF07260 ANKH: Progressive ank 98.9 5.3E-06 1.2E-10 74.5 28.9 311 38-360 9-342 (345)
38 PF14667 Polysacc_synt_C: Poly 98.4 2.6E-05 5.7E-10 64.6 17.0 79 162-242 2-80 (146)
39 PF01943 Polysacc_synt: Polysa 98.3 0.00022 4.7E-09 65.9 22.1 187 265-465 3-190 (273)
40 PF04506 Rft-1: Rft protein; 98.3 0.00017 3.7E-09 72.5 21.5 203 39-242 252-470 (549)
41 PF14667 Polysacc_synt_C: Poly 98.1 2.7E-05 5.9E-10 64.5 9.5 79 385-466 2-80 (146)
42 PF13440 Polysacc_synt_3: Poly 97.9 0.0043 9.3E-08 56.5 22.2 165 283-464 6-171 (251)
43 KOG2864 Nuclear division RFT1 97.9 0.0077 1.7E-07 57.2 22.2 203 38-242 237-449 (530)
44 PF07260 ANKH: Progressive ank 97.9 0.008 1.7E-07 54.6 21.4 167 256-433 6-179 (345)
45 COG4267 Predicted membrane pro 97.3 0.14 3E-06 47.8 36.9 321 88-435 72-414 (467)
46 PF05975 EcsB: Bacterial ABC t 67.0 1.3E+02 0.0028 29.3 17.0 36 334-369 89-124 (386)
47 PF04505 Dispanin: Interferon- 63.1 49 0.0011 23.9 6.8 40 316-355 34-73 (82)
48 COG4267 Predicted membrane pro 51.2 2.4E+02 0.0051 27.3 20.3 135 313-464 75-209 (467)
49 KOG2468 Dolichol kinase [Lipid 37.1 4.3E+02 0.0092 26.2 12.2 74 267-349 379-452 (510)
50 PTZ00206 amino acid transporte 35.8 4.7E+02 0.01 26.3 11.4 49 70-118 79-128 (467)
51 PRK03612 spermidine synthase; 29.8 6.2E+02 0.014 25.9 22.4 26 48-73 22-48 (521)
52 PF04505 Dispanin: Interferon- 26.5 2.5E+02 0.0055 20.3 5.7 37 97-133 37-73 (82)
53 PF14898 DUF4491: Domain of un 25.8 1.9E+02 0.0041 21.5 4.6 18 470-487 73-90 (94)
54 PF03904 DUF334: Domain of unk 24.9 4.6E+02 0.01 23.2 7.6 39 112-150 142-180 (230)
55 PF14936 p53-inducible11: Tumo 24.6 4.2E+02 0.0092 22.2 10.6 99 138-243 72-174 (179)
56 PRK10739 putative antibiotic t 23.7 4.9E+02 0.011 22.6 8.8 59 324-386 22-80 (197)
57 TIGR00383 corA magnesium Mg(2+ 23.1 2.8E+02 0.0061 26.0 6.9 56 409-468 253-317 (318)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.3e-57 Score=445.86 Aligned_cols=438 Identities=28% Similarity=0.399 Sum_probs=414.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011264 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (490)
Q Consensus 35 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 114 (490)
.++..|+++++++|++++++.+.+++++|+.++||++++++++.+++.++..+. ..+..|++.|.++.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 456789999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHH
Q 011264 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (490)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (490)
++++..++++.++++++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++..+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777777 88999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CCCccchHHHHHHHHHHHHHHHHHHHhccc-cccccCCCCHHhHHhHHHHHHHHhhh
Q 011264 194 SSGITALLHILVCWILVFK-SG-LGSRGAALANSISYWINVLLLAIYVKFSSS-CAKTWTGFSKEALNNVFNFVRLAIPS 270 (490)
Q Consensus 194 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~p~ 270 (490)
.++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.++++ ......+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 46 999999999999999999999999987764 22222334344789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 011264 271 AVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAV 350 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 350 (490)
+++++.+...+...+.+++++| ++.+|+|+++.++.++.+++..+++++..|.+++++|+||+|++++..+.+..++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHH
Q 011264 351 TEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSA 430 (490)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 430 (490)
.+++..+++++++++++.++|++|+++.+.+..++++..+..++++++....+.+|+.||+|.+++.++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 011264 431 ILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEKEAKKAT 476 (490)
Q Consensus 431 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (490)
+++.++. +|..|+|+++..++.++.+...+++++.+|+++..+..
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAAA 453 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 9998865 79999999999999999999999999999987765543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.6e-52 Score=415.63 Aligned_cols=432 Identities=17% Similarity=0.195 Sum_probs=399.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 011264 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (490)
Q Consensus 37 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 116 (490)
+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4589999999999999999999999999999999999999999999998887 888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHH
Q 011264 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH--QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (490)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (490)
++..+.++.++..++++.+++ +++.++++.++. .++|+.+.+..|+++..++.|+..+.....+++|+.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988877 668889999884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCCccchHHHHHHHHHHHHHHHHHHHhccc--cccccCC-CCHHhHHhHHHHHHH
Q 011264 194 SSGITALLHILVCWILVFKS----GLGSRGAALANSISYWINVLLLAIYVKFSSS--CAKTWTG-FSKEALNNVFNFVRL 266 (490)
Q Consensus 194 ~~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~l~~~ 266 (490)
.+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++++ .+.++++ +++.+++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999864 7899999999999999988877666654322 2222222 222367889999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011264 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (490)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (490)
|+|.+++.........+.+.+++++| ++++|+|+++.++.++..++..+++++..|.+++++|+||.|++++..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998888888899887 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhh
Q 011264 347 VMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVG 426 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 426 (490)
+++..+++.++++++++++++..+|++|+|+.+.+..++++.++..++++++....+.+++.||++.+++.++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhcChHHH
Q 011264 427 IPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEKE 471 (490)
Q Consensus 427 i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (490)
+|+.+++....++|..|+|++..+++.+..++.++++++.+|+|+
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999987778999999999999999999999999999999983
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.7e-51 Score=408.42 Aligned_cols=427 Identities=26% Similarity=0.347 Sum_probs=391.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011264 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (490)
Q Consensus 36 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 115 (490)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+. ..+..|++++.++.++|++|++|+|+
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 45689999999999999999999999999999999999999999999999987 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHH
Q 011264 116 LGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSS 195 (490)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (490)
+++..+.++.+...++++..++..+.++++.+++.++|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998877775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCCccchHHHHHHHHHHHHHHHHHHHhcccc-cccc-CCCCHHhHHhHHHHHHHHhh
Q 011264 196 GITALLHILVCWILVFKS----GLGSRGAALANSISYWINVLLLAIYVKFSSSC-AKTW-TGFSKEALNNVFNFVRLAIP 269 (490)
Q Consensus 196 ~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~p 269 (490)
+++.++|+++|++|+++. ++|+.|+++|+.+++.+..+...++++++++. +.+. ++..+.+++..|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999863 58999999999999988877766666554322 1221 12223367889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011264 270 SAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMA 349 (490)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (490)
.++++..+.....+++.++++++ +++++++++++++..+..++..+++++..+.+++++|+||+|++++..+.+..++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 011264 350 VTEGILVGSVLILIRNVWGYAYSN--EI---EVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYL 424 (490)
Q Consensus 350 ~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (490)
..++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++.+++....+++++.||+|.+++.++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999974 43 6788899999999999999999999999999999999999999999889
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 425 VGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 425 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
+++|+.+++.+.+++|+.|+|+++.+++.+..+.....++.
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988778999999999999999998877766644
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=8.7e-50 Score=397.83 Aligned_cols=435 Identities=24% Similarity=0.400 Sum_probs=399.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011264 33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ 112 (490)
Q Consensus 33 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~ 112 (490)
+..++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++.... ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~ 83 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGR 83 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567899999999999999999999999999999999999999999999987776 77888999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhH
Q 011264 113 YHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (490)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (490)
+|+.++..+.++.+.+.+++++.++ +.+.+++..+++.++++.+.+..|+++.+++.++..+...+++++++.|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 84 RERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999888777 667788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCCCccchHHHHHHHHHHHHHHHHHHHhccccc-c-ccCCCCHHhHHhHHHHHH
Q 011264 192 VLSSGITALLHILVCWILVFK----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCA-K-TWTGFSKEALNNVFNFVR 265 (490)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~ 265 (490)
++.++++.++|++++++++++ +++|+.|+++++.+++++..++..++.+++++.+ . .+.+..+.+++..|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 3689999999999999999998887776554321 1 112222236678999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011264 266 LAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVV 345 (490)
Q Consensus 266 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~ 345 (490)
.++|.+++...+...+.++..++++++ ++++++++++.++.++..++..+++.+..+.+++++|+||++++++..+.+
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~ 321 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIG 321 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHh
Q 011264 346 LVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLV 425 (490)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 425 (490)
.+++..++++.+++++.+++++.++|++|+++.+.+..++++..+..++.+++....+++++.||++.+++.++++.+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~ 401 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVL 401 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 011264 426 GIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEK 470 (490)
Q Consensus 426 ~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (490)
++|+.+++...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 402 ~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 402 GLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998777899999999999999999999988888876654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=6.6e-50 Score=396.58 Aligned_cols=423 Identities=17% Similarity=0.180 Sum_probs=388.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011264 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (490)
Q Consensus 37 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 115 (490)
+..|++++.++|.+++++...+++++|+.+++| +|++++++++++.++..+. ..+..+++.+.++.++|++|++|+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 567999999999999999999999999999999 5999999999999999987 77888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHH
Q 011264 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (490)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (490)
+++..+.++.++.+++++..++ +.+.++++.+++.+++..+.+.+|+++..++.++..+.....+.+|+.|+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988877 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcccc-ccccCCCCHHhHHhHHHHHHHHhhhhHH
Q 011264 195 SGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSC-AKTWTGFSKEALNNVFNFVRLAIPSAVM 273 (490)
Q Consensus 195 ~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 273 (490)
++++.++|+++++++++++++|+.|+++|+.+++.+..++.++++++++.. +.+.+.+ +.+++..|++++.|.|..++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHH
Confidence 999999999999999998899999999999999999998877777654332 2222222 23677899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 011264 274 VCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEG 353 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (490)
.....+...+.+.+++++++ ++++|+|+++.++..+..++..+++.+..|.+++++|+||+|++++..+.+.+++...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998873 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHH
Q 011264 354 ILVGSVLILIRNVWGYAYSN-EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAIL 432 (490)
Q Consensus 354 ~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~ 432 (490)
++.+++++++++++..+|+. |+|+.+.+..++++..++.+++++.....+.+++.||++.++..++.. +++++|+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 788999999999999999999999999999999999999999999887 6789999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 433 LAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 433 l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
+... +|+.|+|+++.+++.+..++..+.+++
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 8653 599999999999999998877766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=4.3e-49 Score=387.57 Aligned_cols=424 Identities=17% Similarity=0.146 Sum_probs=371.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011264 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHL-GELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (490)
Q Consensus 36 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 114 (490)
.+..|+++++++|.++++++..+++.+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.++|++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 35579999999999999999999999999999997 678999999999999988 8888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHH
Q 011264 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (490)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (490)
++++..++++.+++.++++..++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888776 66888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccc-cccCCCCHHhHHhHHHHHHHHhhhhH
Q 011264 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCA-KTWTGFSKEALNNVFNFVRLAIPSAV 272 (490)
Q Consensus 194 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~p~~~ 272 (490)
.++++.++|+++++++++++++|+.|+++|+.+++.+..++..++++++++.+ .+.+.++...++.+|+++++|.|..+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988999999999999999998888777775533222 11111221113478999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 011264 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTE 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 352 (490)
++..+...+.+.+.+++++| ++++|+|+++.++.++..++..+++++..|.+++++|+||+|++++..+++.+++...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC---cchhhHHHHHHHHHHhhHHH
Q 011264 353 GILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCG---WQMIGAFVNLGSYYLVGIPS 429 (490)
Q Consensus 353 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~~~i~~ 429 (490)
+...+++++++++++..+|++|+|+.+.+..++++..+..+...+......++++.+ |+|.+++.++++.|+..+
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~-- 399 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLL-- 399 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999998876443334444444455555 599999999988554222
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhcChHH
Q 011264 430 AILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTNWEK 470 (490)
Q Consensus 430 ~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (490)
.. +.+|..|+|++..+++.++.++..+++++. |+|
T Consensus 400 ---~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 400 ---TL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred ---HH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 11 246999999999999999999888776654 754
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=7.7e-37 Score=309.51 Aligned_cols=413 Identities=14% Similarity=0.065 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHH
Q 011264 42 QLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPL-SGASMATSFATVTGFSFL-VGLSSALETLCGQSYGAKQYHMLGI 118 (490)
Q Consensus 42 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~ 118 (490)
+.|.+....++++++.+++++|..+++| +|++++ ++++++.++...+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678889999999999999999999999 999999 899999999877623333 468888777776664332 57777
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhhHHHHHHc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHH
Q 011264 119 HMQRGMFVLLLISVP-LALI-WANTESLLVAA--HQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (490)
Q Consensus 119 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (490)
.+.+++......+.. ..++ +++.+++..++ +.+++..+.+..|++++.++.++..+..+.++.+|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766666555443 3444 66777787777 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccch--HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhH
Q 011264 195 SGITALLHILVCWILVFKSGLGSRGAA--LANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAV 272 (490)
Q Consensus 195 ~~~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 272 (490)
+++..++++...+++. .++|..|++ +++++++.+..++.+++.++++. +.+ .+++ .+++..|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLK-PRFN-FRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccc-CcCC-CCChhHHHHHHHHHHHHH
Confidence 9999888777544443 488999988 99999999988887777655431 111 1122 145778999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011264 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWM-IPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (490)
++....+...+|+.+.+.++ ++++++|+.+.++.++... +..+++++..|.+++++|+||++++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998866655 6789999999999998765 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 011264 352 EGILVGSVLILIRNVWGYAYSN----EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGI 427 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (490)
+++|+++++.++++++..+|.+ |++.++.+..++++++++.++.+++......+++.||+|.+++.+... .++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHH
Confidence 9999999999999999999986 567788999999999999999999999999999999999999999998 68899
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011264 428 PSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (490)
Q Consensus 428 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (490)
++++++... +|..|+|+++.+++.+..++..++.+|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988653 6999999999999999998887777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=7.5e-37 Score=308.58 Aligned_cols=415 Identities=15% Similarity=0.125 Sum_probs=349.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHH
Q 011264 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (490)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~ 121 (490)
.+.+.|.+++++...+.+++|+.+++| +|+|++|+++.+.++..+.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999999887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 011264 122 RGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITAL 200 (490)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (490)
.++.+.+..+++..++ +.+.+++...++.+++. ..++++..+..++..+.....+.+|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888777 55667666666555543 346778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCCccchHHHHHHHHHHHHHHHHHHHhccccccc--cCCCCHHhHHhHHHHHHHHhhhhHH
Q 011264 201 LHILVCWILVFK-----SGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKT--WTGFSKEALNNVFNFVRLAIPSAVM 273 (490)
Q Consensus 201 ~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~p~~~~ 273 (490)
+++.++..++.. .++++.|+++++.+++.+..+...++.+++++.+.+ +.+.++.+++.+|++++++.|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998877666542 245677888999999999888876666544332221 1112233567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCc--h---h---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 011264 274 VCLEMWSFEMMVLLSGLLPN--P---A---LETSVL-SISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCV 344 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~a~~-~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~ 344 (490)
++...+....|+.++++... | . +..+.| +++.++..+...+..+++++..|.+++++|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988875421 0 1 233444 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 011264 345 VLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYL 424 (490)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 424 (490)
+.++...++.|+++++.++++++..++.++++ +..+++++++..++..++....+.+++.||+|..++.+.+. .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999999886543 57789999999999999999999999999999999999998 68
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011264 425 VGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (490)
Q Consensus 425 ~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (490)
+++++++.+...+.+|..|+++++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999888633567999999999999999999988877663
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.3e-36 Score=290.79 Aligned_cols=338 Identities=33% Similarity=0.518 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 011264 48 PLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVL 127 (490)
Q Consensus 48 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 127 (490)
|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|+|+.++..+.++.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH
Q 011264 128 LLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVC 206 (490)
Q Consensus 128 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 206 (490)
..++++.+++ +++.+++..+++.+++..+.+..+++++.++.++..+.....+.+++.||++.+++.++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998887 678889988888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHHHHHHHHHHH
Q 011264 207 WILVF-KSG-LGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMM 284 (490)
Q Consensus 207 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~ 284 (490)
++++. .++ +|+.|+++++.+++++..++..++.+++++.+.++++..+.+++..|++++++.|.++++...++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 98887 456 8899999999999999988887777654433333222223367889999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 285 VLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIR 364 (490)
Q Consensus 285 ~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (490)
+.+++.++ ++++++|+++.++.++...+..+++++..|.+++++++||.|+.++..+++.++...++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCcHHHHHHHHHHHHHH
Q 011264 365 NVWGYAYSNEIEVVKYVASMLPIL 388 (490)
Q Consensus 365 ~~i~~l~~~~~~~~~~~~~~l~i~ 388 (490)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999989888888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=4.7e-35 Score=288.40 Aligned_cols=405 Identities=13% Similarity=0.033 Sum_probs=343.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 011264 42 QLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHM 120 (490)
Q Consensus 42 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 120 (490)
++|.+.+...+.+...+.+++...+++| +|++++|.++..+++..++......|++++.++.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677888999999999999999999999 99999999999999999874555888999989999988 67888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Q 011264 121 QRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA 199 (490)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 199 (490)
++++.+.+..+++++++ +++.+++...+..+++. . .+..+..+..+...+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877 67888988877766642 2 4455666666667778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHHHHHH
Q 011264 200 LLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMW 279 (490)
Q Consensus 200 ~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~ 279 (490)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...++.+++++.+.+..+.+. +++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444442 34999999999999999887777777554432222122222 578899999999999999999999
Q ss_pred HHHHHHHHhh-cCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011264 280 SFEMMVLLSG-LLPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVG 357 (490)
Q Consensus 280 ~~~~~~~~~~-~~~~g~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (490)
....++.+++ .++ ++++|.|+++.|+.+. ...+..+++++..|.++++ +|+|+.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 555 7899999999999885 5889999999999999985 6788899999999999999999999
Q ss_pred HHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHHh
Q 011264 358 SVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLL 437 (490)
Q Consensus 358 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 437 (490)
+++++++|+++.++.+|+ ++++.+++++++++.++...+...+..+.+.++++.....++.. .++++++++++.+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-
Confidence 999999999999999876 77789999999999999988888888788888888888888776 78899999998664
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 438 HFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 438 ~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
+|..|++++..+++.+..++..+...+
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999887766553
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=6e-36 Score=291.42 Aligned_cols=445 Identities=47% Similarity=0.786 Sum_probs=422.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011264 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (490)
Q Consensus 36 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 115 (490)
..+.|++++++.|+.+....+.+.+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999987788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHH
Q 011264 116 LGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSS 195 (490)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (490)
......++.......+++...++.+.++++..+++++++...+..|.++.++..+.+........++|++++.....+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHH
Q 011264 196 GITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVC 275 (490)
Q Consensus 196 ~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ 275 (490)
....++++.+++++++..++|..|++++..+++.........|..... .+..|..+... ++.++++++.++|..++.-
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mic 261 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMIC 261 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeH
Confidence 999999999999999999999999999999999999999888886555 55566666665 8899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011264 276 LEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGIL 355 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (490)
+++..+.......+.+++...+++..++..++....+++..+++.+...++++.+|+++.+.+|.........++..+..
T Consensus 262 lE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~ 341 (473)
T KOG1347|consen 262 LEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGAS 341 (473)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998767899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHH
Q 011264 356 VGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAF 435 (490)
Q Consensus 356 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 435 (490)
.+..+....+.+.++|++|+++.+......++++...++++.+.+..+..++.|++++..++++....++.+|+...+.+
T Consensus 342 ~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~ 421 (473)
T KOG1347|consen 342 LGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGF 421 (473)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999987
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 011264 436 LLHFGGRGLWLGIICALIVQATSLGIITARTNWEKEAKKATDRVYNS 482 (490)
Q Consensus 436 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (490)
..++|..|.|.++..+..+..........+.+|++..++..++....
T Consensus 422 ~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~ 468 (473)
T KOG1347|consen 422 FTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIAS 468 (473)
T ss_pred EEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhh
Confidence 78899999999999998888888888889999999999998887543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=4e-29 Score=246.31 Aligned_cols=386 Identities=20% Similarity=0.124 Sum_probs=335.4
Q ss_pred cC-hhhHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 011264 70 LG-ELPLSGASMATSFATVTGFSFL-VGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLV 146 (490)
Q Consensus 70 lg-~~~~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 146 (490)
+| .++..+|..+..+..++...+. .+++++..|..++.. ++++|+.++..+..+.+.....+.++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 4566789999999998744444 468999999999999 7888999999999888888888887777 778899988
Q ss_pred Hc--CCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC---Cccch
Q 011264 147 AA--HQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLG---SRGAA 221 (490)
Q Consensus 147 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~a 221 (490)
.+ +.+++..+.+..++++..+..++..+..++.+.+|+++|+..+....++.++..+....++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 77 557888899999999999999999999999999999999999999888888776665444443 566 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 011264 222 LANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVL 301 (490)
Q Consensus 222 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 301 (490)
+|..++.+++.++.....+|.+.+ .+. .++. +.+..|++++...|..+.....++...+++.+.+.++ +..++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FRP-KFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-ccc-cCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 999999999998888888665433 111 1111 3356899999999999999999999999999999887 5589999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----cHH
Q 011264 302 SISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSN----EIE 376 (490)
Q Consensus 302 ~~~~~i~~~~~-~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~ 376 (490)
+.++++.+++. .+..+++++..|.++++..+||.++.++..++..+....+.+|+++++..++++++++++. |++
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999977 4677999999999999999999999999999999999999999999999999999999862 566
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 011264 377 VVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQA 456 (490)
Q Consensus 377 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~ 456 (490)
..+....++.+++++.++.++.......+++.+|+|.+++.+..+ .++++.+++.+.. .+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVP--FFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999999999999999999999998 7899999988855 4699999999999999999
Q ss_pred HHHHHHHhhc
Q 011264 457 TSLGIITART 466 (490)
Q Consensus 457 ~~~~~~~~~~ 466 (490)
++.++.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9888888776
No 13
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=3.9e-28 Score=244.84 Aligned_cols=398 Identities=11% Similarity=0.062 Sum_probs=320.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHH
Q 011264 39 VKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLG 117 (490)
Q Consensus 39 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~ 117 (490)
.|+..+.+.+..++++...+.+++...+++| +|||++|.++.+..+..+.......|++++.. |. +|. .+
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SH 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CH
Confidence 3678888999999999999999999999999 99999999999999999875677778888653 21 111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHH
Q 011264 118 IHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSG 196 (490)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 196 (490)
+..+..+.+....+++..++ +.+.+++..++ ++++. ...+.+..+..++..+.....+.+++.++.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455566666677666665 44454444444 34432 34567777888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHHH
Q 011264 197 ITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCL 276 (490)
Q Consensus 197 ~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~ 276 (490)
...+....+...+.. .++|..+.+++..++..+..+...+.. +++ .+++ .+ .+++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~-~~~~---~~-~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKI-YRPA---LH-FSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-ccc-CCcc---ce-ecHHHHHHHHhhhHHHHHHHHH
Confidence 888888777766654 478999999999999887766543332 222 1211 11 1456789999999999999999
Q ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011264 277 EMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWM-IPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGIL 355 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (490)
..+....|+.+++++. |++++|.|+.+.++.+++.. +...++++..|.+++. ++|.++.++..++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 48899999999999988654 5556788999999886 578889999999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHH
Q 011264 356 VGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAF 435 (490)
Q Consensus 356 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 435 (490)
+++++.+++++++.++.+++ ++++...+.++++..++..+.......+++.||+|..+..+++. .++.+|..+.+..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~ 376 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHh
Confidence 99999999999999998866 78899999999999999999999999999999999999999887 6777887776654
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 436 LLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 436 ~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
.+|..|+++++.+++.+...+..+...|
T Consensus 377 --~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 --LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999988888776634
No 14
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.98 E-value=3.6e-27 Score=227.90 Aligned_cols=420 Identities=15% Similarity=0.054 Sum_probs=350.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCh-hhHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHhhhcCCccchH
Q 011264 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGE-LPLSGASMATSFATVTGFSFLV-GLSSALETLCGQSYGAKQYHML 116 (490)
Q Consensus 40 k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~-~~~~~~~~~~~i~~~~~~~~~~-gl~~~~~~~is~~~g~~~~~~~ 116 (490)
.++++-++-.....+++.+.+++...+++. +|. ....++..+..+.+++--.+.. +++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 556677777778888899999999999999 997 5667899999999987344433 4789999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHH
Q 011264 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAA-HQ--DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (490)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (490)
++..+........+.+..+++ .++.+++.... +. +++....+....+++.+..++.++.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777777665666666666666 56777777444 33 233333577888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhH
Q 011264 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAV 272 (490)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 272 (490)
+..+..++..+.....+....+....+.+|++.++-+.+.++.+..++|.+...+....++ -+..|++.+.-.|..+
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p~~l 243 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLPALL 243 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHHHHH
Confidence 9999888887755555544322236788999999999999999999987663333222222 2678999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011264 273 MVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVW-MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVT 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (490)
.....++...+++.+.+.+. +-.++.+..++++++++. .+..+++++..|.++++..++|.++.++..+++.++...
T Consensus 244 ~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll 321 (518)
T COG0728 244 GVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999886 448999999999999988 688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 011264 352 EGILVGSVLILIRNVWGYAYSN----EIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGI 427 (490)
Q Consensus 352 ~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 427 (490)
+++|.++++..++++++.+++. +++........+..++++.++..+..+....++|.+|+|.++++++++ .++|+
T Consensus 322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~ 400 (518)
T COG0728 322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNI 400 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHH
Confidence 9999999999999999999853 455677889999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011264 428 PSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITARTN 467 (490)
Q Consensus 428 ~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 467 (490)
.+++.+.. .+|..|++.+..++..++..+.++..+|+.
T Consensus 401 ~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 401 LLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99977644 468889999999999888888888777754
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=6.1e-26 Score=228.43 Aligned_cols=391 Identities=17% Similarity=0.139 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 011264 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (490)
Q Consensus 38 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 116 (490)
..++..+.+.....+++.+.+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++.+++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~ 83 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLL 83 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHH
Confidence 34788999999999999999999999999999 99999999999999999986777799999999999998765554444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHH
Q 011264 117 GIH-MQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSS 195 (490)
Q Consensus 117 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (490)
... ...........+.+.........+. .+.....+.+..+..+.........+.+|+.++.+......
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (480)
T COG2244 84 ILLSVLLLLLLALILLLLLLLIAYLLAPI----------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSI 153 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 444 4444444433333333332222221 12233456788999999999999999999999999998884
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHH
Q 011264 196 GITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVC 275 (490)
Q Consensus 196 ~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~ 275 (490)
+.+ ..-....+.+. ........++...+..........+..++++...+ ...+ ..++..|++++++.|...++.
T Consensus 154 ~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 154 VSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-PILR-FSLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cccC-chhHHHHHHHHHhhHHHHHHH
Confidence 444 22222222222 23455666777777777666655555422221111 1111 146889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011264 276 LEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGIL 355 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (490)
...+....|+.+++++. |++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...+++|
T Consensus 228 ~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHH
Q 011264 356 VGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAF 435 (490)
Q Consensus 356 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 435 (490)
..+++..+++++..++.+++ +..+...+.+++++.++.++.......+++.|+++...+.+.++ .+.++.+++.+..
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~ 383 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIP 383 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHH
Confidence 99999999999999999876 55689999999999999999999999999999999999999998 6888999998865
Q ss_pred HhcCCchHHHHHHHH
Q 011264 436 LLHFGGRGLWLGIIC 450 (490)
Q Consensus 436 ~~~~g~~G~~~a~~~ 450 (490)
.+|..|+..+...
T Consensus 384 --~~g~~g~~~a~~~ 396 (480)
T COG2244 384 --RFGLIGAAIATAS 396 (480)
T ss_pred --hhhhhhHHHHHHH
Confidence 4588888888833
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=4.9e-21 Score=188.79 Aligned_cols=210 Identities=23% Similarity=0.225 Sum_probs=200.7
Q ss_pred hHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011264 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (490)
Q Consensus 256 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~ 335 (490)
.++..|+++++++|.+++++...+...+|+.++++++ ++++|+-++++++..+...+..+++.+..+.++|.+|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3568999999999999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 011264 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (490)
+++++..+++......++++..++...+++++..++.+++++.+.+..|+++..++.++..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH-hc-CCchHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 011264 416 FVNLGSYYLVGIPSAILLAFL-LH-FGGRGLWLGIICALIVQATSLGIITARTNW 468 (490)
Q Consensus 416 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (490)
+.++++ .++|+.+++++.+. ++ +|+.|+++|+.+++.+..++..+++.|++.
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999998 89999999999877 45 899999999999999999998888887664
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=8e-21 Score=187.30 Aligned_cols=207 Identities=16% Similarity=0.106 Sum_probs=193.5
Q ss_pred HHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 011264 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPE 336 (490)
Q Consensus 257 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~ 336 (490)
+++.|++++++.|.+++++...+...+|+.++++++ |++++|+.+++.++.++...+..+++.+..+.+++++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356889999999999999999999999999999986 3778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHH
Q 011264 337 AARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAF 416 (490)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 416 (490)
++++..+++..++...+++..++...+.+++..++..|+|+.+.+.+|+++..++.++..+.......+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 417 VNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 417 ~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
.++++ .++|+++++++.+..++|+.|+++|+.+++.+..++..+++++
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 7889999999988778999999999999999988876665554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=1.3e-20 Score=187.58 Aligned_cols=206 Identities=17% Similarity=0.045 Sum_probs=189.0
Q ss_pred hHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011264 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (490)
Q Consensus 256 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~ 335 (490)
+++..|++++.++|.+++++...+...+|+.++++++ ++++|+++++.++.++...+..+++++..|.+++++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4678999999999999999999999999999999987 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 011264 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (490)
|++++..+.+..+...++++..++.. +.+++..++..|+|+.+.+..|+++..++.++..+.....+.+++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877766 56899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 416 FVNLGSYYLVGIPSAILLAFL----LHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 416 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
+.++++ .++|+++++++.+- +++|+.|+++|+.+++.+..+...+++++
T Consensus 162 ~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 162 VISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 78899999988643 24799999999999988877766555554
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=1.5e-20 Score=187.22 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=191.2
Q ss_pred HHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 011264 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPE 336 (490)
Q Consensus 257 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~ 336 (490)
.+..|+++++++|.+++++...+...+|+.++++++ ++++|+++++.++..+...+..+++.+..+.+++++|+||+|
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 355999999999999999999999999999999987 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhh
Q 011264 337 AARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYS--NEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIG 414 (490)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 414 (490)
++++..+.+..++..++++.+++.+++++++..++. .|+|+.+.+..++++..++.++..+.....+.+++.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 999999999999999999999999999999999995 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011264 415 AFVNLGSYYLVGIPSAILLAFL----LHFGGRGLWLGIICALIVQATSLGIITA 464 (490)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 464 (490)
++.+++. .++|+++.+.+.+. +++|+.|+|+|+.+++.+..++..+++.
T Consensus 183 ~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 183 LLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 78999999988753 3689999999999999998887665554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=2.2e-20 Score=185.59 Aligned_cols=209 Identities=15% Similarity=0.064 Sum_probs=195.3
Q ss_pred hHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011264 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (490)
Q Consensus 256 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~ 335 (490)
+++..|++++.++|.+++++...+...+|+.+++++. |+++++++++++++.++...+..+++.+..+.+++++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 3466899999999999999999999999999999973 278999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 011264 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (490)
|++++..+++..+...++++.+++..++++++..++..|+++.+.+..++++..++.++..+.......+++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011264 416 FVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (490)
Q Consensus 416 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (490)
..++.+ .++++++++++.+.+++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999998 78999999999887789999999999999999998877666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=7.7e-20 Score=182.59 Aligned_cols=209 Identities=19% Similarity=0.112 Sum_probs=193.6
Q ss_pred hHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 011264 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHP 335 (490)
Q Consensus 256 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~ 335 (490)
.++.+|+++++++|.++++....+...+|..++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 5678999999999999999999999999999999987 77899999999998888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 011264 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (490)
|+.++..+.+..+...++++.+++++++++++..++..|+++.+.+..++++.+++.++..+......++++.||+|.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 011264 416 FVNLGSYYLVGIPSAILLAFL----LHFGGRGLWLGIICALIVQATSLGIITARTN 467 (490)
Q Consensus 416 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 467 (490)
+.+.++ .++++++++++.+. +++|+.|+++++.+++.+..++..++.+|.+
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999998 68899999888642 3579999999999999999998877766543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=3.2e-17 Score=166.21 Aligned_cols=204 Identities=19% Similarity=0.167 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011264 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (490)
Q Consensus 36 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 115 (490)
++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++..+....+..+++++..|.+++.+|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 35679999999999999999999999999885559999999999999999876345678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----ChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhh
Q 011264 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQ----DSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (490)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (490)
.++..+++......++++.+++ ..+++++..++.+ ++|..+.+..++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998887 6789999887754 4577888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHh
Q 011264 191 MVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (490)
Q Consensus 191 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 241 (490)
+++.+....++|++++++++. .+|..|+++++.+++.+..++..++.+|
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875 6899999999999999998888777754
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.5e-16 Score=147.91 Aligned_cols=270 Identities=18% Similarity=0.184 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHH
Q 011264 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQ 121 (490)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~ 121 (490)
.|.+.....+++...+.+++...+++| +|+|++|.++...++..++......|++++..+.+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567788899999999999999999999 99999999999999999885666899999998888887533 344555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 011264 122 RGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALL 201 (490)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (490)
.......+.+++..+...... ..+.+ +... .+........++..........+++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333333322211 33322 2211 122222222257788888999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHHHHHHHH
Q 011264 202 HILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSF 281 (490)
Q Consensus 202 ~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 281 (490)
..++..+++.. +.+..+..++..++.++...+..++.+|+.+ .+ ....+++..|++++++.|..++++...+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PR---FSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc---ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666653 4458889999999999888887777765432 11 112246889999999999999999999999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011264 282 EMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNE 329 (490)
Q Consensus 282 ~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~ 329 (490)
..|..+++++. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 226 ~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 226 QIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 489999999999999999999999999999999975
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.79 E-value=5.6e-17 Score=156.02 Aligned_cols=194 Identities=20% Similarity=0.167 Sum_probs=179.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011264 269 PSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVM 348 (490)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (490)
|.+++++...+...+++.++++++ ++++++|+.+.++..+...+..+++++..|.++++.|++|+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999987 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHH
Q 011264 349 AVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIP 428 (490)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (490)
....+++.+++.+++++++..++..|++..+.+..+++++.++.++.+++......+++.||++...+.++++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987788889999999999999999999999999999999999999999988 678888
Q ss_pred HHHHHHH-Hhc-CCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 429 SAILLAF-LLH-FGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 429 ~~~~l~~-~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
+++.+.+ .++ +|..|+++++.+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888766 455 679999999999999998887766665
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=2e-15 Score=149.22 Aligned_cols=205 Identities=22% Similarity=0.211 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 011264 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (490)
Q Consensus 37 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 116 (490)
+..|++++...|..++.....+..++|+.+.+++++.++++++++..+.++....+..++++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45789999999999999999999999999999999999999999999999986788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhH
Q 011264 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH----QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (490)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (490)
++.+++++.....+.++.++. +.++++++.++. .+.|..+....++.+++++.++..+..++...+.+.+|+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999888 779999998764 466778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q 011264 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSS 243 (490)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 243 (490)
++.++++.++|++++.++.. .+|..|.++++.++..+..++..+.++|+.
T Consensus 355 ~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988886 899999999999999999998888886543
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=2.9e-18 Score=145.97 Aligned_cols=162 Identities=28% Similarity=0.424 Sum_probs=157.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 011264 269 PSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVM 348 (490)
Q Consensus 269 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 348 (490)
|.+++++.+.+...++..++++++ ++++++++++.++.++...+..+++++..+.+++++|++|+|++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHH
Q 011264 349 AVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIP 428 (490)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 428 (490)
...++++.+++..++++++..+|++|+++.+.+..++++..++.++.++.....+++++.||+|..++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997799999
Q ss_pred HHHH
Q 011264 429 SAIL 432 (490)
Q Consensus 429 ~~~~ 432 (490)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.74 E-value=4.7e-16 Score=157.17 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------hHHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 011264 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGEL---------PLSGA-SMATSFATVTGFSFLVGLSSALETL 103 (490)
Q Consensus 35 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~---------~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~~ 103 (490)
.++..|++++++.|.+++++...+...+|+.++++ +++. .+|.+ +.+.++..+. .....+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998 5322 22322 3455667776 67788999999999
Q ss_pred HHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 011264 104 CGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFL 182 (490)
Q Consensus 104 is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 182 (490)
+++..|++|+|+.++..+++..+....+++.+++ ..+.++++.++..++ .+..+++++++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887 668888888776443 35678999999999999999999999
Q ss_pred hhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHh
Q 011264 183 QTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (490)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 241 (490)
++.||+|.+++.+++..++|++++++++..+++|+.|+++++.+++++..+...++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875458999999999999999998888777754
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=7.2e-18 Score=143.53 Aligned_cols=160 Identities=28% Similarity=0.392 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHH
Q 011264 48 PLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVL 127 (490)
Q Consensus 48 p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 127 (490)
|.++++++..+...+|+.+++++|++++++++++.++..+. ..+..|+++|..+.++|.+|++|+|+.++..+.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH-HHHHHH
Q 011264 128 LLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITA-LLHILV 205 (490)
Q Consensus 128 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 205 (490)
..+++++.++ +.+.+++..+++.++|+.+.+.+|+++..++.++..+.....+++++.||++.+++.+++.. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999998 77888999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHH
Q 011264 206 CWI 208 (490)
Q Consensus 206 ~~~ 208 (490)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=6.8e-14 Score=136.14 Aligned_cols=205 Identities=20% Similarity=0.172 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchH
Q 011264 37 EEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHML 116 (490)
Q Consensus 37 ~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 116 (490)
+..|++.+...|+.++...+++...+|+.+.+.+.+.+.+.+.++..+.++....+..++++...|..||...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 56799999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhH
Q 011264 117 GIHMQRGMFVLLLISVPLALI-WANTESLLVAAH----QDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (490)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (490)
++..+.++.+.++..++.+++ ..+++|+...+. .+++....+...+....++.++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999998 679999998663 355666777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcc
Q 011264 192 VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSS 243 (490)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 243 (490)
+++.+++.++|+.+++.+.. .+|..|.++++.++.++++...++..+|+.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999977665 788889999999999998888877776543
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.69 E-value=1.4e-13 Score=139.19 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011264 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (490)
Q Consensus 36 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 114 (490)
++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.......+...++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4567999999999999999999999999999999 99999999999999998764555666788888999886 56788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHH
Q 011264 115 MLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVL 193 (490)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 193 (490)
+.++.+.+...+...+++++.++ ..++++++.++.+++ +..+...++++++...+..+.......+++.||+|.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999999998887 678899888776543 566788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHh
Q 011264 194 SSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (490)
Q Consensus 194 ~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 241 (490)
.+++..+++++..+++.. .+|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888887766664 7899999999999999988877776643
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.66 E-value=4.6e-13 Score=122.77 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=178.9
Q ss_pred HHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHH
Q 011264 58 CLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLAL 136 (490)
Q Consensus 58 ~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (490)
..+++...+++| +|+|++|.++....+..+.......|++..... ..++|+++.++..+.........+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999 999999999999999998845557777776544 22345556666666665554444433333
Q ss_pred HHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011264 137 IWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLG 216 (490)
Q Consensus 137 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 216 (490)
+.. .+..++ .+++. ..++....+..+.........+.+++.+|.+..........+....+..++.. .+.+
T Consensus 77 ~~~---~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 LAI---LIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HHH---HHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 211 111222 23322 23455666778888889999999999999999999999999888555544444 2447
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCHHhHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhh
Q 011264 217 SRGAALANSISYWINVLLLAIYVKFSSSCAKTWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPAL 296 (490)
Q Consensus 217 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 296 (490)
..+..++..++.++..++.....+++ .+..+ +.+..| .++.+.|..++++........|..+++.+. |++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~ 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK----LRLSF----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc----cCCCc----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHH
Confidence 88888888888887776655533211 11111 223334 799999999999999999999999999954 489
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011264 297 ETSVLSISLNTASTVW-MIPFGLSGAASTRVSN 328 (490)
Q Consensus 297 ~~a~~~~~~~i~~~~~-~~~~~i~~~~~p~~~~ 328 (490)
++|.|+++.++.+.+. .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999888 9999999999999886
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.65 E-value=4.8e-14 Score=139.15 Aligned_cols=199 Identities=8% Similarity=-0.092 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011264 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (490)
Q Consensus 35 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 113 (490)
.++..|++++++.|..+++....+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35678999999999999999999999999999986 99999999999999987443788999999999999995 567
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHH
Q 011264 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (490)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (490)
|+.++..+........++++.+++ .+++++++.++.+++ ++.+.+++++++++..+......+...+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999998888888887777 678999998887554 34466788888888888888777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHH
Q 011264 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVK 240 (490)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 240 (490)
...+...+++++++++++. .+|..|+++++.+++.+..+...+...
T Consensus 365 ~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999885 799999999999999999887766554
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.61 E-value=2.5e-13 Score=136.89 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc
Q 011264 35 IIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY 113 (490)
Q Consensus 35 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 113 (490)
.++..|++++.++|..++++...+.+.+|+.++++ +|++++|.|+.+..+.... ..+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 46788999999999999999999999999999999 9999999999888888887 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHH
Q 011264 114 HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (490)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (490)
++.++..++++.+....+++..++ ..++++++..+.+++. ..+...+.++++..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999888 6788899887765542 2367788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHH
Q 011264 193 LSSGITALLHILVCWILVFKSGLGSRGAALANSIS 227 (490)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~ 227 (490)
+.+.++.++|++++++++. .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999986 88999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.46 E-value=3.6e-10 Score=112.63 Aligned_cols=420 Identities=12% Similarity=-0.011 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhhcCCccchHHHHH
Q 011264 43 LWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATV-TGFSFLVGLSSALETLCGQSYGAKQYHMLGIHM 120 (490)
Q Consensus 43 ~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~-~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 120 (490)
.+.+.-+++.+++..+.+++-+.++-| ++|+.+|..+.=..+..- ..+..=.++..++.+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345667788888898888888888888 999999988555444432 213444577777665433331122223333333
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHH--H--HHHcCCC-hH---HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHhhcC
Q 011264 121 QRGMFVLLLISVPLALIWA--NTES--L--LVAAHQD-SE---ISKEAGLYARYMIPSIFAYAILQCL----VRFLQTQN 186 (490)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~--~~~~--i--~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~~~~~~----~~~l~~~~ 186 (490)
+.+..+..+++++.+.+++ ...+ + ..+...+ ++ ..+.....+.+...+.....+...+ +..+.-.-
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 3333333333332222211 1111 1 1111111 11 1122222333444444444443333 33444444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCC--CC-----cc-chHHHHHHHHHHHHHHHHHHHh--ccc---cccccCCCC
Q 011264 187 IVFPMVLSSGITALLHILVCWILVFKSGL--GS-----RG-AALANSISYWINVLLLAIYVKF--SSS---CAKTWTGFS 253 (490)
Q Consensus 187 ~~~~~~~~~~~~~~~~i~l~~~li~~~~~--g~-----~g-~a~a~~i~~~~~~~~~~~~~~~--~~~---~~~~~~~~~ 253 (490)
|.+.-........+.+..+.+..... ++ +. .+ +.++..++++...+........ ... .+...++..
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~-~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~ 242 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERS-GYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKIS 242 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhc-ccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccc
Confidence 55555555555555554444333211 11 11 11 2344555555544332222211 111 111111111
Q ss_pred H---HhHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhc--CCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011264 254 K---EALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGL--LPNPALETSVLSISLNTASTV-WMIPFGLSGAASTRVS 327 (490)
Q Consensus 254 ~---~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~~i~~~~-~~~~~~i~~~~~p~~~ 327 (490)
. .....-+++++.....+.+++.-.+...-|.+++.. +.+ .++-|.|++++++.+++ ..+..++....-...+
T Consensus 243 ~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fs 321 (549)
T PF04506_consen 243 SGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFS 321 (549)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHH
Confidence 1 011134788999999999999999999999999998 664 88999999999998885 4677888888888888
Q ss_pred HhhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHH
Q 011264 328 NELGAGHP---------EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQ 398 (490)
Q Consensus 328 ~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 398 (490)
+...+++. +++.+.....++....+++.+..+...+++.+.+++.++.-....+...+++++...++.+++
T Consensus 322 k~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~N 401 (549)
T PF04506_consen 322 KLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAIN 401 (549)
T ss_pred HHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHc
Confidence 88765432 346667777788888888887777778888888888765433344688999999999999999
Q ss_pred HHHHHHHHhcCcchhhHHHHHHH--HHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 399 CVLSGIARGCGWQMIGAFVNLGS--YYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 399 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
.+...+.++..+++.....+-.- ..++.+..++++... ++|..|..+|..+.+.++.+.+..+.+|
T Consensus 402 Gi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 402 GITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877655543321 134556677888765 6899999999999999999998887765
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=3e-08 Score=92.39 Aligned_cols=419 Identities=12% Similarity=-0.020 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHhhhcCCccch
Q 011264 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH-LGELPLSGASMATSFATVTG-FSFLVGLSSALETLCGQSYGAKQYHM 115 (490)
Q Consensus 38 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-lg~~~~~~~~~~~~i~~~~~-~~~~~gl~~~~~~~is~~~g~~~~~~ 115 (490)
......+.+.-.+..+++..+..+.-+.++-| ++++.+|..+.-..+.+-.. +..-.++.-|..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 44556666666777777777777766666666 99999999877666655320 222234444432222111 112335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHH
Q 011264 116 LGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSE-ISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (490)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (490)
..+..+.+.-+..++.++..-+|+....-. ++. ..+.-.....+...+.....+...+.-..|..-+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~-----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLGFLSSS-----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHhhcc-----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444432111100 110 11111222333444444444444444445555555555555
Q ss_pred HHHHHHHH-HHHHHHHHHhc-CCCCccchHHHHHHHHHHHHHHHHHHHhccc-ccc---------ccCCCCHH--hHHhH
Q 011264 195 SGITALLH-ILVCWILVFKS-GLGSRGAALANSISYWINVLLLAIYVKFSSS-CAK---------TWTGFSKE--ALNNV 260 (490)
Q Consensus 195 ~~~~~~~~-i~l~~~li~~~-~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~--~~~~~ 260 (490)
.....++. +..-..++.+. .+++...|+|.........+...+++.+.++ .+. ..++.... ....-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 65665555 22222333322 4555556666665555444422333333222 100 01111110 11133
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCChHHH
Q 011264 261 FNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPN-PALETSVLSISLNTASTV-WMIPFGLSGAASTRVSNELGAGHPEAA 338 (490)
Q Consensus 261 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~i~~~~-~~~~~~i~~~~~p~~~~~~g~~~~~~~ 338 (490)
++..+.-.....+.+.-++...-+..+++.... +-.+-|.|.++++..++. .++..++....-..+++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 566666666667777777777777777763321 134788999999987774 467788888888888888777666655
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 011264 339 RL---AVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (490)
Q Consensus 339 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (490)
++ .....++....+++.+......+++.+..++.++.-.-..+...+++++...++.+++.+..+..++.++.+...
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 54 455666667777777777777778888888877543333456889999999999999999999999988776554
Q ss_pred HH---HHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011264 416 FV---NLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITART 466 (490)
Q Consensus 416 ~~---~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 466 (490)
.. ..+. .++.+.+++++..+. |..|..+|..+.+.++.+.+..+.++.
T Consensus 399 ~~n~~mlaf-SviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAF-SVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHH-HHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 2232 355678889998764 889999999999999998887666553
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.29 E-value=3.5e-10 Score=111.26 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=187.3
Q ss_pred HHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 011264 257 LNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTAST-VWMIPFGLSGAASTRVSNELGAGHP 335 (490)
Q Consensus 257 ~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~p~~~~~~g~~~~ 335 (490)
+.+.|++.+++.|..+....+.....++..+.+++| +.++++.++++...+. .+.+..++..+..|..++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578999999999999999999999999999999998 5599999999988877 4568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhH
Q 011264 336 EAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGA 415 (490)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 415 (490)
+......+++........++.+... .+.+++...+.+|+++...+..+.++.....+.+.........+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 9999999999888888888877554 555899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 416 FVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 416 ~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
++.... ..+++++++++.+..++|..|+..+..+++.+.......+...
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 999998 8999999999999999999999999999999998877666554
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.95 E-value=5.3e-06 Score=74.45 Aligned_cols=311 Identities=12% Similarity=0.021 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011264 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLG---ELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (490)
Q Consensus 38 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg---~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 114 (490)
.+.++.++-.|+.+++.+..+...+-+.-++|-. .+.++.|+++.++.-++ ..+...+...... +++++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~-----~V~s~rs 82 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLV-----FVNSKRS 82 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHH-----Hhcchhh
Confidence 4688999999999999999999999999898732 25589999999998887 6666666655443 3333322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhH
Q 011264 115 MLGIHMQRGMFVLLLISVPLALI-WA-NTESLL-VAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPM 191 (490)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 191 (490)
-++........+.+...+..++ +- ....++ ..++.++++.+.++..+.++.+.-++.++....++++.-.+++...
T Consensus 83 -rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 -RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 2233333233333333332333 33 333333 3568899999999999999999999999999999988866666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-ccc---hHHHHHHHHHHHHH-HHHHHHhccccccccCCCCHHhHHhHHHHHHH
Q 011264 192 VLSSGITALLHILVCWILVFKSGLGS-RGA---ALANSISYWINVLL-LAIYVKFSSSCAKTWTGFSKEALNNVFNFVRL 266 (490)
Q Consensus 192 ~~~~~~~~~~~i~l~~~li~~~~~g~-~g~---a~a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (490)
...++...+..+++..+++.. ++.. ... ..+...+..+...+ .+-|+..-....+........+...+++++++
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 666655555555555555532 2222 111 12333333222211 12222111111111111122234568999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhcCCch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHH----
Q 011264 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNP----ALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAA---- 338 (490)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~---- 338 (490)
..|.+.....+.....+.+.++++..+| ++++++..+.+...-+.+...+-+ .+..|..-++ ++.++.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~---~~~~~~~~~~ 316 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKN---NPQNKLRNCG 316 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhcc---Cccccccccc
Confidence 9999999999999999999999994333 366777666666554444333322 1233433222 222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Q 011264 339 ----RLAVCVVLVMAVTEGILVGSVL 360 (490)
Q Consensus 339 ----~~~~~~~~~~~~~~~~~~~~~~ 360 (490)
+..+++.......+++..+..+
T Consensus 317 ~~v~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 317 NPVTQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2255666666666665555444
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.43 E-value=2.6e-05 Score=64.63 Aligned_cols=79 Identities=25% Similarity=0.280 Sum_probs=72.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHh
Q 011264 162 ARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKF 241 (490)
Q Consensus 162 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 241 (490)
+++++++.++..+....++.+++.||++..++.+.++.++|++++++++. ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999975 8999999999999999998888887764
Q ss_pred c
Q 011264 242 S 242 (490)
Q Consensus 242 ~ 242 (490)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 3
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.31 E-value=0.00022 Score=65.90 Aligned_cols=187 Identities=17% Similarity=0.122 Sum_probs=114.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 011264 265 RLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMI-PFGLSGAASTRVSNELGAGHPEAARLAVC 343 (490)
Q Consensus 265 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~-~~~i~~~~~p~~~~~~g~~~~~~~~~~~~ 343 (490)
|-+......+....+.......++++.. |+++.|.|+....+.++...+ ..|+.++..-..++..++ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 4444555666666666666666666665 389999999999999988876 668888887777765332 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHH
Q 011264 344 VVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYY 423 (490)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 423 (490)
....... +...+.... ..+...+. +++. + ..+........++..........+++.++.+.....++.. .
T Consensus 80 ~~~~~~~-~~~~i~~~~----~~~~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 149 (273)
T PF01943_consen 80 SVLFLLL-IFSLIFLLI----LLIASFFG-NPSL-S--LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS-S 149 (273)
T ss_pred HHHHHHH-HHHHHHHHH----HHHHHHcC-CchH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3332222 222222222 22222333 3321 1 1122222222257788888899999999999998888887 4
Q ss_pred HhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 011264 424 LVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITAR 465 (490)
Q Consensus 424 ~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 465 (490)
+..+.+...+... ..+..+..++..++..+..++..+..+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444333 3357888899999998888877776664
No 40
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.28 E-value=0.00017 Score=72.50 Aligned_cols=203 Identities=12% Similarity=0.057 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCcc--
Q 011264 39 VKRQLWLSGPLISVSLLQFCLQMISVMFVGH---LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQY-- 113 (490)
Q Consensus 39 ~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~-- 113 (490)
-+++++.+.....+++...+.+--|+.++.. .+.++-|.|+++..+-+++.=.+...+..+.....++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4788999999999999999999999999998 45889999999999999886777778888888888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Q 011264 114 -------HMLGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQ 185 (490)
Q Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 185 (490)
++..+.+...+.+...+++++..+ -...+.++.+++++.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 234556666677777777666665 556666777665433223345677889999999999999999999988
Q ss_pred CchhhHH---HHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q 011264 186 NIVFPMV---LSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFS 242 (490)
Q Consensus 186 ~~~~~~~---~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 242 (490)
...+... ....+..++-+..+++++.. ++|..|..+|+++...+..++++.+.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665443 34444455666777888865 78999999999999999999988888543
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.07 E-value=2.7e-05 Score=64.53 Aligned_cols=79 Identities=23% Similarity=0.153 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011264 385 LPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITA 464 (490)
Q Consensus 385 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 464 (490)
+.+++++.++.++....+..+++.||+|..++.+.++ .++++++++.+.+ ++|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999998 8999999999954 579999999999999999999888887
Q ss_pred hc
Q 011264 465 RT 466 (490)
Q Consensus 465 ~~ 466 (490)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.93 E-value=0.0043 Score=56.47 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=104.6
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011264 283 MMVLLSGLLPNPALETSVLSISLNTASTVWMIP-FGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLI 361 (490)
Q Consensus 283 ~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (490)
....++++.. ++++.|.|+....+..+...+. .++.+...- ..++|+++.++..+..........+...+
T Consensus 6 ~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (251)
T PF13440_consen 6 LFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI--- 76 (251)
T ss_pred HHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445566655 3899999999999988888763 344433322 23355666666666555444444333333
Q ss_pred HhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCc
Q 011264 362 LIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGG 441 (490)
Q Consensus 362 ~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~ 441 (490)
+...+...+ ++++ ...++.+..+..++..+.......+++.+|.+......... .+....+...+. ..+.+.
T Consensus 77 -~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 148 (251)
T PF13440_consen 77 -LAILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVR-SLLRLLLLVLLL-YLGLNL 148 (251)
T ss_pred -HHHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHHH-HHHhhH
Confidence 223333333 3332 23455666677778888999999999999999999988887 344433333332 223378
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 011264 442 RGLWLGIICALIVQATSLGIITA 464 (490)
Q Consensus 442 ~G~~~a~~~~~~~~~~~~~~~~~ 464 (490)
.+..++..++..+..+......+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888887776655443
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.0077 Score=57.24 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011264 38 EVKRQLWLSGPLISVSLLQFCLQMISVMFVGH---LGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYH 114 (490)
Q Consensus 38 ~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 114 (490)
..++..+......-+.+...+.+=-|.+++.- ++-++=|.|.+....-++..-.+...+.-....+.+|...++++|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34566666667777778888888888888884 555677888888888777766667778778778888888776666
Q ss_pred hHHH---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhh
Q 011264 115 MLGI---HMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFP 190 (490)
Q Consensus 115 ~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 190 (490)
+.++ ++.+.+.+...++++.+.. --..++.+.+.+++.=....+...+++.+..+++..++.+..++..+....+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 5554 4455555555555444444 44666667777655433344557789999999999999999999998776554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhc
Q 011264 191 M---VLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFS 242 (490)
Q Consensus 191 ~---~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 242 (490)
. -+...+..+.-++++++++- .+|..|..+|+++...+.-+..+.+.++.
T Consensus 397 i~~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33445556677788888886 56678999999988888877777666543
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.86 E-value=0.008 Score=54.60 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=114.3
Q ss_pred hHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011264 256 ALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGL-LPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGH 334 (490)
Q Consensus 256 ~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~ 334 (490)
+....++++++-+|..+++....+.-.+.+.-+++ .-+..+.+|.|+++..+.-++..+...+-++....+. ++
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~-----s~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVN-----SK 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhc-----ch
Confidence 44678999999999999999999999998888876 3333466999999999999988888887776665543 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhh-hhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Q 011264 335 PEAARLAVCVVLVMAVTEGILVGSVLI-----LIRNV-WGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGC 408 (490)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 408 (490)
.+ -++.... + ...++..+++.. .++.. +.+++.-|+++.+.+...+.++.+..+++++.....+++.-.
T Consensus 81 rs-rr~~vl~-~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~ 155 (345)
T PF07260_consen 81 RS-RRKAVLC-M---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH 155 (345)
T ss_pred hh-hHHHHHH-H---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 22 1222222 2 222222222211 22222 445566688999999999999999999999999999888856
Q ss_pred CcchhhHHHHHHHHHHhhHHHHHHH
Q 011264 409 GWQMIGAFVNLGSYYLVGIPSAILL 433 (490)
Q Consensus 409 g~~~~~~~~~~~~~~~~~i~~~~~l 433 (490)
.++......++.. ....+.....+
T Consensus 156 r~s~iV~~aSI~~-v~~qvV~v~~l 179 (345)
T PF07260_consen 156 RHSWIVGSASIAD-VIAQVVLVAIL 179 (345)
T ss_pred cceeEeehHHHHH-HHHHHHHHHHH
Confidence 6666666666654 33334333333
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.33 E-value=0.14 Score=47.79 Aligned_cols=321 Identities=11% Similarity=0.040 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhh
Q 011264 88 TGFSFLVGLSSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIP 167 (490)
Q Consensus 88 ~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~ 167 (490)
++..+..|++...++.+|...=++|.++...-+.....+....+..+..+.+ ....+.... |=.....
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si~-----yk~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSIV-----YKILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhHH-----HHHHHHH
Confidence 3356678899999999999887777777665554444444444433332211 111122111 1123344
Q ss_pred hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHhcccccc
Q 011264 168 SIFAYAILQCLVRFLQTQNIVFPMVLSSGITALLHILVCWILVFKSGLGSRGAALANSISYWINVLLLAIYVKFSSSCAK 247 (490)
Q Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~ 247 (490)
.....+...+...++.+.++.+...+.-.++.++...+..++- +.+..|..++..++..+.......+..|.-+.+.
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 4555566667777889999999999999999999988887776 5689999999999999888777777654422221
Q ss_pred ccCCCCHHhHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHH------HHHHHHHHHHHHHHHH-----
Q 011264 248 TWTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSV------LSISLNTASTVWMIPF----- 316 (490)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~------~~~~~~i~~~~~~~~~----- 316 (490)
+ ..+.. -+..+--....+.....+++..+|+.+--+-++|.+..+. |.+.--...+...+..
T Consensus 217 ~-i~FdF------L~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 217 R-IGFDF------LLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred c-cceeh------hhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 1 11111 1111122234455566666667777665554433222222 2222222222121111
Q ss_pred HHHHHHHHHHHHhhc----CC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHH
Q 011264 317 GLSGAASTRVSNELG----AG-------HPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASML 385 (490)
Q Consensus 317 ~i~~~~~p~~~~~~g----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 385 (490)
.+.+...+.--+.+. .+ +.++.....++...-..-+-...++.++++++.+...+.-++. ..+.+
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHH
Confidence 222333333222111 11 2233333444444445556667788888899988887765542 34555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHH
Q 011264 386 PILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAF 435 (490)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 435 (490)
.+-.++.-.+......-.+..-..+-+.....+..- ...|-.+.++...
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~ 414 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH
Confidence 555555555555555545555555556555555543 4555555555543
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=66.98 E-value=1.3e+02 Score=29.35 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011264 334 HPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGY 369 (490)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 369 (490)
++++.+++.+++.+.+........++.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998888888777766655
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=63.10 E-value=49 Score=23.93 Aligned_cols=40 Identities=23% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011264 316 FGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGIL 355 (490)
Q Consensus 316 ~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 355 (490)
.-++-.....+-+.+.+||++++++.-+++.+++..-.+.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444556777888999999999999988877644333
No 48
>COG4267 Predicted membrane protein [Function unknown]
Probab=51.19 E-value=2.4e+02 Score=27.29 Aligned_cols=135 Identities=15% Similarity=0.072 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHH
Q 011264 313 MIPFGLSGAASTRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASN 392 (490)
Q Consensus 313 ~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 392 (490)
.++.++.-...-.++..+=+||.+++...+.-...+....+..++.+++ +.++| +...... ......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf---------~~~~~--~si~yk~--l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF---------FVNNQ--YSIVYKI--LACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh---------hhcCc--hhHHHHH--HHHHHH
Confidence 3555666666666676666677777777666666555555555443221 12222 1112222 223334
Q ss_pred HHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHh
Q 011264 393 FLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGGRGLWLGIICALIVQATSLGIITA 464 (490)
Q Consensus 393 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 464 (490)
+..+..-+....+.+.+|.|.....-.++ ..+.+.++.++-. .+..|.-++.-++..+.......+..
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Il 209 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYIL 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44455556677888888888888877777 5666666666644 48889999988888777665544443
No 49
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=37.12 E-value=4.3e+02 Score=26.20 Aligned_cols=74 Identities=7% Similarity=0.065 Sum_probs=50.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011264 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (490)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (490)
+-|..++.+.--++-..-..+.+..-+|+.+++- +...+..|+++.....+++.+|+.+..+-+|...-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~---------laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALAL---------LAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhhh---------hhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 6688887776655555555566555433333333 3345678999999999999999998888877766555
Q ss_pred HHH
Q 011264 347 VMA 349 (490)
Q Consensus 347 ~~~ 349 (490)
...
T Consensus 450 Afi 452 (510)
T KOG2468|consen 450 AFI 452 (510)
T ss_pred HHH
Confidence 433
No 50
>PTZ00206 amino acid transporter; Provisional
Probab=35.76 E-value=4.7e+02 Score=26.30 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=19.7
Q ss_pred cC-hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccchHHH
Q 011264 70 LG-ELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHMLGI 118 (490)
Q Consensus 70 lg-~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~ 118 (490)
++ |.++..-+....+..++......-.+.-.....++..+.+++++..+
T Consensus 79 LsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~ 128 (467)
T PTZ00206 79 VGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVAR 128 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 44 55554444444443332122222222223333444444455555533
No 51
>PRK03612 spermidine synthase; Provisional
Probab=29.84 E-value=6.2e+02 Score=25.91 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cChh
Q 011264 48 PLISVSLLQFCLQMISVMFVGH-LGEL 73 (490)
Q Consensus 48 p~~~~~~~~~~~~~~~~~~i~~-lg~~ 73 (490)
-.+++.+....+..+-.-+++. +|..
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s 48 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDS 48 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3345566666666666666666 5543
No 52
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.51 E-value=2.5e+02 Score=20.26 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=26.5
Q ss_pred HHhHHHHHHhhhcCCccchHHHHHHHHHHHHHHHHHH
Q 011264 97 SSALETLCGQSYGAKQYHMLGIHMQRGMFVLLLISVP 133 (490)
Q Consensus 97 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 133 (490)
+...+..+-+.+.+||++++++.-+++-.++.+..++
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3444456677777899999999888888877554443
No 53
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=25.75 E-value=1.9e+02 Score=21.48 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhcCCCCCc
Q 011264 470 KEAKKATDRVYNSAPPVE 487 (490)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~ 487 (490)
+...++++|++...+|++
T Consensus 73 ~ElfeQ~kRV~kGWFP~N 90 (94)
T PF14898_consen 73 GELFEQEKRVEKGWFPKN 90 (94)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 345567788888888876
No 54
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.88 E-value=4.6e+02 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 011264 112 QYHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQ 150 (490)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (490)
+++...+.+..++...+.+-.+.++++.+..+++.+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 344455555555544444444444445566677766653
No 55
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=24.56 E-value=4.2e+02 Score=22.20 Aligned_cols=99 Identities=17% Similarity=0.026 Sum_probs=48.1
Q ss_pred HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCch--hhHHHHHHHHHHHHHHHH-HHHHHhcC
Q 011264 138 WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIV--FPMVLSSGITALLHILVC-WILVFKSG 214 (490)
Q Consensus 138 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~i~l~-~~li~~~~ 214 (490)
+.|.+.+......++.. ...+.+-..+....++..++.+.++..+|. ++.+.....-..+..... .-+. +
T Consensus 72 L~FP~~~~~~vf~~~~~----~s~~~vRlyGgAL~s~aLi~w~~l~t~ek~iIrwtLL~ea~y~~vq~~vtt~t~~---e 144 (179)
T PF14936_consen 72 LVFPDQLYDHVFEEEPV----TSKLPVRLYGGALLSIALIFWNALYTAEKAIIRWTLLSEACYFGVQFLVTTATLA---E 144 (179)
T ss_pred HHccHHHHHhhcccccc----cceeeehhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 55777666654432221 112334455555566666777767666643 333333333222222221 1111 2
Q ss_pred CCC-ccchHHHHHHHHHHHHHHHHHHHhcc
Q 011264 215 LGS-RGAALANSISYWINVLLLAIYVKFSS 243 (490)
Q Consensus 215 ~g~-~g~a~a~~i~~~~~~~~~~~~~~~~~ 243 (490)
.|. ...+.-..++..+..++..+|++.-+
T Consensus 145 ~~~~s~~~~llLisr~lf~liS~yyYy~~g 174 (179)
T PF14936_consen 145 MGWLSNAALLLLISRLLFALISMYYYYQLG 174 (179)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 23345566777777777777765543
No 56
>PRK10739 putative antibiotic transporter; Provisional
Probab=23.68 E-value=4.9e+02 Score=22.60 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHH
Q 011264 324 TRVSNELGAGHPEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLP 386 (490)
Q Consensus 324 p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 386 (490)
|.+-......+.++-++..++.. .....+.+++.++++.+.++|.-+-+..+.+...+-
T Consensus 22 piflslt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL 80 (197)
T PRK10739 22 PIFMSVLKHLEPKRRRAIMIREL----LIALLVMLVFLFAGEKILAFLNLRTETVSISGGIIL 80 (197)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44444544455566666666544 444455567788899999999876555555554443
No 57
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.09 E-value=2.8e+02 Score=26.01 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=29.0
Q ss_pred CcchhhHHHHHHHHHHhhHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 011264 409 GWQMIGAFVNLGSYYLVGIPSAILLAFLLHFGG---------RGLWLGIICALIVQATSLGIITARTNW 468 (490)
Q Consensus 409 g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (490)
...+..-..++++ ++..|..++-+.+ +++. .| ++......++.++..+++++|++|
T Consensus 253 ~~N~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~g-y~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYG-YPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444555554 3446666665543 2221 23 333334444455567778888887
Done!