Query 011264
Match_columns 490
No_of_seqs 259 out of 2109
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 04:33:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 9.5E-50 3.3E-54 398.6 36.2 433 33-468 5-448 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.3E-19 4.4E-24 180.4 19.3 205 36-241 234-445 (460)
3 4aps_A DI-OR tripeptide H+ sym 93.3 6.4 0.00022 38.1 28.2 22 438-459 447-468 (491)
4 1pw4_A Glycerol-3-phosphate tr 80.0 40 0.0014 31.7 41.0 23 438-460 409-431 (451)
5 3o7q_A L-fucose-proton symport 78.4 44 0.0015 31.3 34.1 44 40-83 26-71 (438)
6 4ev6_A Magnesium transport pro 28.1 96 0.0033 28.2 6.1 53 412-468 277-338 (339)
7 4hkr_A Calcium release-activat 26.9 2.7E+02 0.0092 23.0 12.2 141 249-394 16-164 (214)
8 2k1k_A Ephrin type-A receptor 21.1 61 0.0021 18.6 2.0 11 219-229 15-25 (38)
9 2jwa_A Receptor tyrosine-prote 20.1 94 0.0032 18.6 2.7 8 235-242 31-38 (44)
10 2knc_B Integrin beta-3; transm 11.7 3.8E+02 0.013 18.2 5.5 46 440-485 9-61 (79)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=9.5e-50 Score=398.63 Aligned_cols=433 Identities=25% Similarity=0.410 Sum_probs=398.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011264 33 KKIIEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQ 112 (490)
Q Consensus 33 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~ 112 (490)
+..++..|++++.++|.+++++...+++.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999999999999999999999999998877 77889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHH
Q 011264 113 YHMLGIHMQRGMFVLLLISVPLALIWANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMV 192 (490)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 192 (490)
+|+.++.++.++.+....+++..+++++.++++.+++.+++..+.+..|+++.+++.++..+.....+.+++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999877777788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-c---CCCCccchHHHHHHHHHHHHHHHHHHHhcccccc-c-cCCCCHHhHHhHHHHHHH
Q 011264 193 LSSGITALLHILVCWILVFK-S---GLGSRGAALANSISYWINVLLLAIYVKFSSSCAK-T-WTGFSKEALNNVFNFVRL 266 (490)
Q Consensus 193 ~~~~~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~ 266 (490)
+.++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++.+++++.+. + ++++.+.+++..|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 2 7999999999999999999888888876544322 1 122223467889999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 011264 267 AIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVVL 346 (490)
Q Consensus 267 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 346 (490)
|.|.++++..+.+....++.++++++ ++++|+|++++++.++..++..+++++..|.+++++|+||.|++++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999985 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhh
Q 011264 347 VMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFLDGLQCVLSGIARGCGWQMIGAFVNLGSYYLVG 426 (490)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 426 (490)
++...+++++++++.++++++..+|++|+++++.+..++++++++.++.+++....+++++.||+|.+++.++++.++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999877999
Q ss_pred HHHHHHHHHH----hc-CCchHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 011264 427 IPSAILLAFL----LH-FGGRGLWLGIICALIVQATSLGIITARTNW 468 (490)
Q Consensus 427 i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (490)
+|+++++.+. ++ +|..|+|+++.+++.+..++..+.++|..+
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK 448 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 45 899999999999999999888777666544
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.83 E-value=1.3e-19 Score=180.39 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccch
Q 011264 36 IEEVKRQLWLSGPLISVSLLQFCLQMISVMFVGHLGELPLSGASMATSFATVTGFSFLVGLSSALETLCGQSYGAKQYHM 115 (490)
Q Consensus 36 ~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 115 (490)
++..|++++.+.|.+++++...+...+|+.+++++|++++|+|+++.++..+. ..+..+++++..|.+++.+|++|+|+
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34568999999999999999999999999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhHHHH
Q 011264 116 LGIHMQRGMFVLLLISVPLALI-WANTESLLVAAHQDSEISKEAGLYARYMIPSIFAYAILQCLVRFLQTQNIVFPMVLS 194 (490)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (490)
.++..+.+..+...++++.+++ +++.+++..++..+++..+.+..++++.+++.++.++.....+.+++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999998888 678899999888888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CCCccchHHHHHHHHHHHHHHHHHHHh
Q 011264 195 SGITA-LLHILVCWILVFK----SG-LGSRGAALANSISYWINVLLLAIYVKF 241 (490)
Q Consensus 195 ~~~~~-~~~i~l~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~ 241 (490)
++++. ++++++++++... ++ +|+.|+++++.+++.+..++..+..+|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 8999999999975 45 999999999999999988776655543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=93.26 E-value=6.4 Score=38.13 Aligned_cols=22 Identities=9% Similarity=-0.108 Sum_probs=9.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHH
Q 011264 438 HFGGRGLWLGIICALIVQATSL 459 (490)
Q Consensus 438 ~~g~~G~~~a~~~~~~~~~~~~ 459 (490)
+.+....++.......+..++.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 447 AKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp GSSTTHHHHHTHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 3344444544444444444333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=80.02 E-value=40 Score=31.70 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=12.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHH
Q 011264 438 HFGGRGLWLGIICALIVQATSLG 460 (490)
Q Consensus 438 ~~g~~G~~~a~~~~~~~~~~~~~ 460 (490)
..|....++...+..++..++..
T Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 409 FFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHH
Confidence 34666666655555555554443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=78.41 E-value=44 Score=31.27 Aligned_cols=44 Identities=7% Similarity=-0.092 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--hhhHHHHHHHHH
Q 011264 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGHLG--ELPLSGASMATS 83 (490)
Q Consensus 40 k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg--~~~~~~~~~~~~ 83 (490)
+.+.....-..+..+...........+...+| +.+.|.......
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 71 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFY 71 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33444444444444544555555555555554 555554443333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.11 E-value=96 Score=28.22 Aligned_cols=53 Identities=15% Similarity=0.345 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHhcCC---------chHHHHHHHHHHHHHHHHHHHHHhhcCh
Q 011264 412 MIGAFVNLGSYYLVGIPSAILLAFLLHFG---------GRGLWLGIICALIVQATSLGIITARTNW 468 (490)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---------~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 468 (490)
+..-..++++ ++.+|+.++-+.+ +++ ..|.++ .....++.++..+++++|++|
T Consensus 277 ~~mk~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~-~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 277 QIMKILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWL-VMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHH-HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHH-HHHHHHHHHHHHHHHHHHcCC
Confidence 3344455554 4456777766543 222 234444 344455566667778888888
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=26.90 E-value=2.7e+02 Score=23.02 Aligned_cols=141 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred cCCCCHHhHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011264 249 WTGFSKEALNNVFNFVRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPALETSVLSISLNTASTVWMIPFGLSGAASTRVSN 328 (490)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~i~~~~~p~~~~ 328 (490)
|++... ++.++|..-+.+ ..++++.......+..---.... +.-+..|++...+.-.+.++..-+++-..|.+-.
T Consensus 16 ~R~l~l-s~aqLKA~S~lS--ALLaGFAMVAmVE~ql~~~~~~p--~~LLi~fav~Ttllv~vml~AlMIsTcILPnIea 90 (214)
T 4hkr_A 16 WRKLQL-SRAKLKASSKTS--ALLSGFAMVAMVEVQLDHDTNVP--PGMLIAFAICTTLLVAVHMLALMISTCILPNIET 90 (214)
T ss_dssp HHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHH-HHHHHHHHHHHH--HHHhccceeeEEEEeccCCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred hhcCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHH
Q 011264 329 ELGAGH--------PEAARLAVCVVLVMAVTEGILVGSVLILIRNVWGYAYSNEIEVVKYVASMLPILAASNFL 394 (490)
Q Consensus 329 ~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~ 394 (490)
.-+..+ +++.+.++...=..+..++++..+.-....-|+--.=...+..+..+...++...+...|
T Consensus 91 v~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~F 164 (214)
T 4hkr_A 91 VSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAF 164 (214)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHH
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.09 E-value=61 Score=18.62 Aligned_cols=11 Identities=0% Similarity=-0.161 Sum_probs=4.4
Q ss_pred cchHHHHHHHH
Q 011264 219 GAALANSISYW 229 (490)
Q Consensus 219 g~a~a~~i~~~ 229 (490)
|+.++.+++-.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 33444444333
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.15 E-value=94 Score=18.56 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 011264 235 LAIYVKFS 242 (490)
Q Consensus 235 ~~~~~~~~ 242 (490)
...|++|+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34445443
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.68 E-value=3.8e+02 Score=18.24 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHh-------hcChHHHHHHHHHHhhcCCCC
Q 011264 440 GGRGLWLGIICALIVQATSLGIITA-------RTNWEKEAKKATDRVYNSAPP 485 (490)
Q Consensus 440 g~~G~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 485 (490)
.+.++..+...+-++..++.+...+ |+.++|.-+...+..+++.-+
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~N 61 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANN 61 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Done!