Query 011264
Match_columns 490
No_of_seqs 259 out of 2109
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 04:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011264.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011264hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 47.3 82 0.006 26.9 42.0 26 438-463 406-431 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 43.1 95 0.0069 26.4 19.3 26 214-239 406-431 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 9.4 1.5E+02 0.011 15.8 4.4 34 334-367 7-40 (41)
4 d1pv7a_ f.38.1.2 (A:) Lactose 7.3 5.2E+02 0.038 20.4 36.5 48 40-87 7-57 (417)
5 d1ijdb_ f.3.1.1 (B:) Light-har 4.1 3.2E+02 0.023 14.3 4.2 32 334-365 8-39 (40)
6 d2iuba2 f.17.3.1 (A:286-349) M 3.1 3.7E+02 0.027 15.5 2.3 6 427-432 17-22 (64)
7 d2fyuk1 f.23.15.1 (K:1-53) Sub 2.8 4.5E+02 0.033 14.8 2.2 23 105-127 3-25 (53)
8 d2oara1 f.16.1.1 (A:10-118) Ga 2.7 3.2E+02 0.023 18.3 1.7 14 443-456 61-74 (109)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 2.6 7.2E+02 0.053 15.7 8.5 18 259-276 69-86 (100)
10 d1j1va_ a.4.12.2 (A:) Chromoso 2.3 5.8E+02 0.042 16.0 2.8 37 309-345 35-71 (94)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.25 E-value=82 Score=26.90 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=14.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHH
Q 011264 438 HFGGRGLWLGIICALIVQATSLGIIT 463 (490)
Q Consensus 438 ~~g~~G~~~a~~~~~~~~~~~~~~~~ 463 (490)
..|..+..+......++..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45766666666665555555544443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=43.05 E-value=95 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=13.2
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHH
Q 011264 214 GLGSRGAALANSISYWINVLLLAIYV 239 (490)
Q Consensus 214 ~~g~~g~a~a~~i~~~~~~~~~~~~~ 239 (490)
..|..+..+......++..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665555555544454444444443
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.44 E-value=1.5e+02 Score=15.76 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011264 334 HPEAARLAVCVVLVMAVTEGILVGSVLILIRNVW 367 (490)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 367 (490)
+.|+..+......+....+.+..=++.+.+.||+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3567788888888888888877777777766654
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.26 E-value=5.2e+02 Score=20.45 Aligned_cols=48 Identities=4% Similarity=-0.116 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHHHHHHHHHHHHH
Q 011264 40 KRQLWLSGPLISVSLLQFCLQMISVMFVGH---LGELPLSGASMATSFATV 87 (490)
Q Consensus 40 k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~---lg~~~~~~~~~~~~i~~~ 87 (490)
|+.+.++.-..+..+......-.-..++.+ +++.++|.......+...
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~ 57 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSL 57 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 566666666666666655554444444443 346666655444444433
No 5
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.09 E-value=3.2e+02 Score=14.30 Aligned_cols=32 Identities=6% Similarity=-0.068 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011264 334 HPEAARLAVCVVLVMAVTEGILVGSVLILIRN 365 (490)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (490)
+.++..+......+....+.+..=++.+.+.|
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 34677777778888777777666655555443
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.08 E-value=3.7e+02 Score=15.51 Aligned_cols=6 Identities=17% Similarity=0.689 Sum_probs=2.7
Q ss_pred HHHHHH
Q 011264 427 IPSAIL 432 (490)
Q Consensus 427 i~~~~~ 432 (490)
+|++++
T Consensus 17 lP~t~i 22 (64)
T d2iuba2 17 MPLTFI 22 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 7
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.84 E-value=4.5e+02 Score=14.83 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=12.1
Q ss_pred HhhhcCCccchHHHHHHHHHHHH
Q 011264 105 GQSYGAKQYHMLGIHMQRGMFVL 127 (490)
Q Consensus 105 s~~~g~~~~~~~~~~~~~~~~~~ 127 (490)
++..|++..+.++....+...++
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G 25 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWG 25 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhh
Confidence 45566555555555555544444
No 8
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.67 E-value=3.2e+02 Score=18.26 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 011264 443 GLWLGIICALIVQA 456 (490)
Q Consensus 443 G~~~a~~~~~~~~~ 456 (490)
|.++...+..++.+
T Consensus 61 G~fi~a~InFlIiA 74 (109)
T d2oara1 61 NVLLSAAINFFLIA 74 (109)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.57 E-value=7.2e+02 Score=15.66 Aligned_cols=18 Identities=11% Similarity=0.390 Sum_probs=11.3
Q ss_pred hHHHHHHHHhhhhHHHHH
Q 011264 259 NVFNFVRLAIPSAVMVCL 276 (490)
Q Consensus 259 ~~~~l~~~~~p~~~~~~~ 276 (490)
..-|+.-.-+|..+-..+
T Consensus 69 ~~LEiiWTviP~lILi~l 86 (100)
T d3dtub2 69 SPLEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 356777777777664443
No 10
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.33 E-value=5.8e+02 Score=15.99 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 011264 309 STVWMIPFGLSGAASTRVSNELGAGHPEAARLAVCVV 345 (490)
Q Consensus 309 ~~~~~~~~~i~~~~~p~~~~~~g~~~~~~~~~~~~~~ 345 (490)
.+.+.+..-......+.+++.+|.+|+.-+...+++.
T Consensus 35 ~va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 35 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Done!