Query 011265
Match_columns 490
No_of_seqs 182 out of 1593
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 23:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00206 amino acid transporte 100.0 1.4E-56 3E-61 454.5 33.4 403 73-485 58-465 (467)
2 KOG1304 Amino acid transporter 100.0 5.1E-55 1.1E-59 421.3 34.1 390 68-484 40-449 (449)
3 KOG1303 Amino acid transporter 100.0 1.9E-50 4.1E-55 397.3 31.4 395 71-487 34-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 1.1E-52 2.3E-57 425.0 -1.3 393 73-481 1-408 (409)
5 PLN03074 auxin influx permease 100.0 9.4E-48 2E-52 387.7 33.8 386 71-489 42-456 (473)
6 KOG1305 Amino acid transporter 100.0 2.2E-47 4.9E-52 373.9 26.6 407 72-489 3-410 (411)
7 KOG4303 Vesicular inhibitory a 100.0 3E-44 6.6E-49 325.6 9.2 387 71-488 113-518 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.6E-32 3.5E-37 273.3 33.5 395 71-480 5-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.3E-23 2.9E-28 208.0 36.7 373 74-474 2-392 (394)
10 PRK10483 tryptophan permease; 99.9 1.4E-22 2.9E-27 198.6 34.5 379 71-478 7-404 (414)
11 PRK15132 tyrosine transporter 99.9 5.5E-23 1.2E-27 202.5 31.7 372 76-477 4-392 (403)
12 TIGR00837 araaP aromatic amino 99.9 2.4E-23 5.2E-28 208.2 28.1 349 81-451 3-360 (381)
13 PRK09664 tryptophan permease T 99.9 1.5E-22 3.4E-27 197.9 31.9 380 72-477 6-404 (415)
14 PRK13629 threonine/serine tran 99.9 1.7E-19 3.8E-24 176.5 36.4 385 80-479 24-441 (443)
15 TIGR00814 stp serine transport 99.9 2.5E-19 5.5E-24 177.1 27.1 374 77-470 5-396 (397)
16 PRK10655 potE putrescine trans 99.7 3.6E-14 7.9E-19 144.6 37.1 242 71-328 4-246 (438)
17 PRK10249 phenylalanine transpo 99.7 6.1E-14 1.3E-18 143.4 34.1 356 71-449 19-394 (458)
18 PRK15049 L-asparagine permease 99.7 1.5E-13 3.3E-18 141.6 37.0 359 71-450 26-406 (499)
19 TIGR00905 2A0302 transporter, 99.7 3.9E-13 8.4E-18 138.2 36.2 246 71-328 5-255 (473)
20 PRK10644 arginine:agmatin anti 99.7 1.7E-12 3.7E-17 132.6 38.7 244 70-329 5-249 (445)
21 PRK10435 cadB lysine/cadaverin 99.7 1.6E-12 3.6E-17 132.1 37.7 243 71-330 3-246 (435)
22 TIGR03810 arg_ornith_anti argi 99.7 6.2E-13 1.3E-17 136.5 34.8 361 73-451 1-381 (468)
23 PRK11049 D-alanine/D-serine/gl 99.6 7.6E-13 1.6E-17 135.8 34.4 240 71-327 18-267 (469)
24 TIGR00909 2A0306 amino acid tr 99.6 2.7E-13 6E-18 137.9 30.7 362 72-451 2-377 (429)
25 TIGR00930 2a30 K-Cl cotranspor 99.6 2.8E-13 6.1E-18 147.4 32.4 246 71-325 74-334 (953)
26 KOG1287 Amino acid transporter 99.6 8.4E-14 1.8E-18 136.9 25.0 362 71-451 10-387 (479)
27 PRK11387 S-methylmethionine tr 99.6 1.5E-12 3.3E-17 133.7 35.1 245 71-331 12-266 (471)
28 PRK11021 putative transporter; 99.6 4.6E-12 9.9E-17 128.0 36.5 228 75-325 1-231 (410)
29 TIGR00911 2A0308 L-type amino 99.6 1.7E-12 3.7E-17 134.5 33.4 247 71-330 40-294 (501)
30 PRK10746 putative transport pr 99.6 6.5E-12 1.4E-16 128.4 36.3 359 71-451 8-389 (461)
31 TIGR01773 GABAperm gamma-amino 99.6 4E-12 8.6E-17 130.2 34.6 242 71-329 10-259 (452)
32 PRK10238 aromatic amino acid t 99.6 1.7E-11 3.7E-16 125.4 37.8 357 71-450 10-386 (456)
33 TIGR00913 2A0310 amino acid pe 99.6 1.5E-11 3.3E-16 126.9 37.8 237 73-325 2-251 (478)
34 TIGR00912 2A0309 spore germina 99.6 2E-12 4.4E-17 128.3 28.6 343 74-448 2-352 (359)
35 PRK10836 lysine transporter; P 99.6 7E-11 1.5E-15 122.0 40.2 247 71-331 13-265 (489)
36 PRK10580 proY putative proline 99.6 6.3E-11 1.4E-15 121.4 38.7 239 71-326 7-254 (457)
37 TIGR00908 2A0305 ethanolamine 99.5 2.3E-11 5E-16 124.2 33.8 233 71-324 5-244 (442)
38 TIGR00906 2A0303 cationic amin 99.5 1.4E-11 3E-16 128.4 32.4 367 71-450 26-411 (557)
39 PRK11357 frlA putative fructos 99.5 3.2E-11 7E-16 123.2 33.5 239 71-327 6-251 (445)
40 PRK10197 gamma-aminobutyrate t 99.5 8.6E-11 1.9E-15 119.8 35.0 339 84-449 3-367 (446)
41 PF13520 AA_permease_2: Amino 99.5 1.9E-11 4.1E-16 124.4 29.7 356 75-456 1-381 (426)
42 COG1113 AnsP Gamma-aminobutyra 99.5 1.2E-11 2.5E-16 120.0 26.2 354 71-450 11-389 (462)
43 COG0531 PotE Amino acid transp 99.4 7.4E-10 1.6E-14 114.1 35.3 250 71-332 10-262 (466)
44 TIGR03428 ureacarb_perm permea 99.3 1.4E-08 3.1E-13 104.5 37.5 255 71-331 11-273 (475)
45 PRK15238 inner membrane transp 99.3 2.4E-08 5.2E-13 103.4 38.4 242 71-327 5-267 (496)
46 COG0833 LysP Amino acid transp 99.3 4.1E-09 8.9E-14 104.7 29.6 359 71-449 42-427 (541)
47 PF03845 Spore_permease: Spore 99.3 2.7E-09 5.8E-14 104.1 26.6 287 74-386 1-293 (320)
48 KOG3832 Predicted amino acid t 99.3 9.1E-11 2E-15 100.4 12.3 220 74-300 11-303 (319)
49 TIGR00907 2A0304 amino acid pe 99.2 2.8E-08 6.1E-13 102.7 32.3 247 71-324 10-270 (482)
50 KOG1286 Amino acid transporter 99.2 6.8E-10 1.5E-14 113.8 19.6 371 71-449 28-422 (554)
51 TIGR00910 2A0307_GadC glutamat 99.2 8.1E-08 1.7E-12 99.4 34.4 231 72-324 3-247 (507)
52 TIGR03813 put_Glu_GABA_T putat 99.2 1.6E-07 3.5E-12 96.8 35.4 241 74-331 2-254 (474)
53 PF00324 AA_permease: Amino ac 98.8 3.5E-08 7.6E-13 101.9 13.2 239 84-332 6-261 (478)
54 PRK11375 allantoin permease; P 98.7 8E-05 1.7E-09 76.5 33.8 316 104-441 58-394 (484)
55 KOG1289 Amino acid transporter 98.7 2.4E-05 5.2E-10 78.2 27.4 113 220-333 196-314 (550)
56 TIGR00800 ncs1 NCS1 nucleoside 98.6 0.00022 4.8E-09 72.8 32.2 256 71-334 10-274 (442)
57 PRK12488 acetate permease; Pro 98.4 0.0032 7E-08 66.0 36.4 145 71-232 65-212 (549)
58 TIGR02119 panF sodium/pantothe 98.4 0.0036 7.8E-08 64.6 34.8 147 71-232 38-189 (471)
59 COG3949 Uncharacterized membra 98.4 0.00061 1.3E-08 64.0 25.4 100 79-179 7-109 (349)
60 PRK09442 panF sodium/panthothe 98.3 0.0058 1.3E-07 63.2 35.6 147 71-232 39-190 (483)
61 COG1457 CodB Purine-cytosine p 98.3 0.0045 9.8E-08 61.7 31.2 268 139-446 84-358 (442)
62 TIGR00796 livcs branched-chain 98.2 0.0073 1.6E-07 59.7 32.1 75 83-162 3-80 (378)
63 TIGR02711 symport_actP cation/ 98.2 0.012 2.6E-07 61.7 34.8 145 71-232 65-212 (549)
64 TIGR02358 thia_cytX probable h 98.2 0.0069 1.5E-07 60.6 31.5 269 77-385 7-276 (386)
65 COG0591 PutP Na+/proline sympo 98.2 0.011 2.4E-07 61.1 33.7 109 71-179 36-149 (493)
66 TIGR00813 sss transporter, SSS 98.1 0.0051 1.1E-07 62.2 29.4 145 72-232 2-148 (407)
67 PF00474 SSF: Sodium:solute sy 98.1 0.0046 9.9E-08 62.5 27.7 146 72-233 5-153 (406)
68 PRK09395 actP acetate permease 98.0 0.033 7.1E-07 58.6 36.2 146 71-232 67-214 (551)
69 COG1914 MntH Mn2+ and Fe2+ tra 97.9 0.036 7.8E-07 55.3 29.0 101 74-177 16-118 (416)
70 TIGR03648 Na_symport_lg probab 97.9 0.057 1.2E-06 56.9 34.8 146 71-232 30-177 (552)
71 PRK11017 codB cytosine permeas 97.9 0.042 9.2E-07 55.3 29.8 205 103-332 39-244 (404)
72 PRK10484 putative transporter; 97.8 0.07 1.5E-06 55.8 34.5 90 71-161 36-126 (523)
73 PRK00701 manganese transport p 97.7 0.079 1.7E-06 53.8 28.3 42 134-175 92-133 (439)
74 PRK15419 proline:sodium sympor 97.7 0.098 2.1E-06 54.4 33.5 145 71-232 38-192 (502)
75 COG1953 FUI1 Cytosine/uracil/t 97.7 0.082 1.8E-06 53.2 31.6 215 216-445 186-412 (497)
76 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.1 2.2E-06 54.1 34.7 146 71-232 34-188 (487)
77 KOG1288 Amino acid transporter 97.5 0.011 2.4E-07 60.6 19.0 58 271-329 295-352 (945)
78 PF02133 Transp_cyt_pur: Perme 97.5 0.001 2.2E-08 68.1 11.8 249 71-329 5-259 (440)
79 TIGR00835 agcS amino acid carr 97.4 0.17 3.7E-06 50.7 26.0 84 73-157 45-138 (425)
80 PF02554 CstA: Carbon starvati 97.3 0.013 2.8E-07 56.5 16.2 106 74-179 51-157 (376)
81 KOG2082 K+/Cl- cotransporter K 97.3 0.23 5E-06 51.9 24.9 103 73-176 113-219 (1075)
82 PF01566 Nramp: Natural resist 97.2 0.11 2.4E-06 51.5 21.9 44 134-177 40-83 (358)
83 COG0733 Na+-dependent transpor 97.0 0.47 1E-05 47.2 24.0 64 260-325 204-268 (439)
84 PRK15015 carbon starvation pro 96.7 0.026 5.7E-07 58.2 13.0 104 76-179 84-188 (701)
85 COG4147 DhlC Predicted symport 96.7 0.79 1.7E-05 45.8 26.4 186 125-329 93-294 (529)
86 COG1966 CstA Carbon starvation 96.3 0.09 2E-06 53.2 13.3 106 74-179 51-157 (575)
87 KOG2083 Na+/K+ symporter [Inor 95.8 0.039 8.4E-07 56.1 8.4 226 76-322 31-274 (643)
88 PF00209 SNF: Sodium:neurotran 94.9 5.9 0.00013 41.5 25.1 70 75-144 5-79 (523)
89 KOG2466 Uridine permease/thiam 94.4 6.4 0.00014 39.7 20.5 264 71-345 52-334 (572)
90 PF01235 Na_Ala_symp: Sodium:a 93.3 9.9 0.00021 38.2 20.7 41 71-113 15-56 (416)
91 KOG3659 Sodium-neurotransmitte 93.2 9.2 0.0002 39.6 17.9 89 74-163 81-174 (629)
92 TIGR00796 livcs branched-chain 91.7 3 6.6E-05 41.4 12.5 77 103-179 221-298 (378)
93 TIGR01197 nramp NRAMP (natural 89.4 25 0.00054 35.2 27.1 87 82-174 11-102 (390)
94 KOG2349 Na+:iodide/myo-inosito 87.9 6.8 0.00015 40.9 11.7 93 71-164 43-136 (585)
95 COG4145 PanF Na+/panthothenate 87.1 32 0.00069 33.7 28.8 106 72-179 38-150 (473)
96 PF05525 Branch_AA_trans: Bran 86.5 4.9 0.00011 40.5 9.6 46 136-181 261-306 (427)
97 KOG1291 Mn2+ and Fe2+ transpor 84.4 27 0.00059 35.2 13.2 44 394-437 354-399 (503)
98 PRK10263 DNA translocase FtsK; 83.1 45 0.00097 38.5 15.7 32 298-329 15-46 (1355)
99 PRK15433 branched-chain amino 79.9 18 0.00039 36.6 10.5 41 139-179 268-308 (439)
100 COG0814 SdaC Amino acid permea 69.2 36 0.00078 34.4 9.8 165 292-461 211-387 (415)
101 TIGR00906 2A0303 cationic amin 68.4 1.6E+02 0.0036 31.0 16.5 46 136-181 299-344 (557)
102 TIGR03750 conj_TIGR03750 conju 64.4 66 0.0014 25.7 8.2 67 72-138 15-81 (111)
103 PF05805 L6_membrane: L6 membr 63.7 22 0.00048 31.4 6.0 65 423-487 46-118 (195)
104 PRK15433 branched-chain amino 63.4 1.8E+02 0.0038 29.6 26.8 331 76-447 9-356 (439)
105 KOG1289 Amino acid transporter 62.9 1.2E+02 0.0025 31.6 11.7 50 133-182 322-371 (550)
106 PF05525 Branch_AA_trans: Bran 61.7 1.9E+02 0.0041 29.4 25.5 325 77-447 5-353 (427)
107 cd08762 Cyt_b561_CYBASC3 Verte 58.8 1.3E+02 0.0027 26.4 10.1 67 302-376 67-133 (179)
108 PF13520 AA_permease_2: Amino 57.2 1.2E+02 0.0026 30.5 11.3 46 138-183 260-305 (426)
109 PF11990 DUF3487: Protein of u 53.7 1E+02 0.0022 25.1 7.9 66 72-138 18-84 (121)
110 KOG2736 Presenilin [Signal tra 48.7 1.3E+02 0.0028 29.5 8.8 52 76-128 342-393 (406)
111 TIGR00909 2A0306 amino acid tr 43.7 3.5E+02 0.0077 27.2 12.7 47 136-182 264-310 (429)
112 PHA02764 hypothetical protein; 42.8 3.2E+02 0.007 26.5 22.8 87 72-163 11-104 (399)
113 KOG4812 Golgi-associated prote 42.4 50 0.0011 30.0 4.8 68 408-479 164-243 (262)
114 PLN02680 carbon-monoxide oxyge 41.7 2.8E+02 0.0061 25.4 9.7 67 302-376 76-142 (232)
115 PF05767 Pox_A14: Poxvirus vir 40.8 1.6E+02 0.0035 22.4 6.7 54 428-481 13-67 (92)
116 PHA03048 IMV membrane protein; 37.5 1.8E+02 0.0039 22.0 6.4 55 428-482 13-67 (93)
117 KOG1287 Amino acid transporter 35.4 2.1E+02 0.0045 29.4 8.6 40 139-179 276-315 (479)
118 KOG3660 Sodium-neurotransmitte 34.4 6.2E+02 0.013 27.3 24.8 72 76-147 39-115 (629)
119 PHA02898 virion envelope prote 34.3 2E+02 0.0044 21.7 6.1 52 429-480 14-66 (92)
120 TIGR00905 2A0302 transporter, 33.4 5.5E+02 0.012 26.3 12.6 46 138-183 270-315 (473)
121 PRK13183 psbN photosystem II r 33.2 47 0.001 21.6 2.3 30 304-333 4-33 (46)
122 PF10716 NdhL: NADH dehydrogen 33.1 75 0.0016 23.5 3.6 45 422-467 16-60 (81)
123 PRK10644 arginine:agmatin anti 31.8 5.3E+02 0.011 26.2 11.3 45 135-179 259-303 (445)
124 cd08765 Cyt_b561_CYBRD1 Verteb 31.8 2.6E+02 0.0056 23.8 7.3 69 301-377 43-111 (153)
125 PLN02810 carbon-monoxide oxyge 31.7 4.1E+02 0.0089 24.4 9.9 73 294-376 70-142 (231)
126 PF02468 PsbN: Photosystem II 31.4 49 0.0011 21.3 2.2 26 308-333 5-30 (43)
127 TIGR00907 2A0304 amino acid pe 30.8 6E+02 0.013 26.0 15.6 47 136-182 289-336 (482)
128 COG4709 Predicted membrane pro 30.7 88 0.0019 27.4 4.3 53 74-130 75-128 (195)
129 CHL00020 psbN photosystem II p 29.2 43 0.00092 21.5 1.6 27 307-333 4-30 (43)
130 PF08019 DUF1705: Domain of un 29.1 2.7E+02 0.0059 23.6 7.3 16 434-449 73-88 (156)
131 CHL00182 tatC Sec-independent 28.9 4.8E+02 0.01 24.3 11.5 31 352-382 76-106 (249)
132 KOG2592 Tumor differentially e 28.6 3.4E+02 0.0075 26.9 8.3 36 401-436 115-155 (426)
133 PHA02680 ORF090 IMV phosphoryl 28.2 2.1E+02 0.0046 21.5 5.3 58 276-335 17-74 (91)
134 PF04835 Pox_A9: A9 protein co 27.5 1.7E+02 0.0038 19.7 4.3 29 306-334 23-51 (54)
135 COG3817 Predicted membrane pro 26.6 3.6E+02 0.0077 25.1 7.5 30 457-486 166-195 (313)
136 PF12794 MscS_TM: Mechanosensi 26.5 6.2E+02 0.013 24.8 11.2 40 302-341 44-83 (340)
137 PRK05415 hypothetical protein; 25.6 5.2E+02 0.011 25.3 9.1 51 77-128 70-120 (341)
138 PRK11281 hypothetical protein; 25.5 7.2E+02 0.016 28.9 11.5 30 302-331 540-569 (1113)
139 PLN00151 potassium transporter 25.3 9.7E+02 0.021 26.7 21.5 67 274-344 348-415 (852)
140 KOG1277 Endosomal membrane pro 25.2 7.5E+02 0.016 25.3 14.0 21 308-328 557-577 (593)
141 COG1115 AlsT Na+/alanine sympo 25.1 7.5E+02 0.016 25.2 25.0 40 71-112 59-99 (452)
142 TIGR00927 2A1904 K+-dependent 24.9 5.4E+02 0.012 29.1 9.8 8 105-112 938-945 (1096)
143 PF07954 DUF1689: Protein of u 23.7 1.6E+02 0.0035 25.0 4.6 58 425-485 33-92 (152)
144 cd08766 Cyt_b561_ACYB-1_like P 23.7 3.7E+02 0.0081 22.6 6.9 68 302-377 37-104 (144)
145 PF03169 OPT: OPT oligopeptide 23.4 5E+02 0.011 27.9 9.6 59 88-147 366-426 (624)
146 PF05915 DUF872: Eukaryotic pr 22.5 4.1E+02 0.009 21.4 7.9 65 76-141 40-112 (115)
147 PF02028 BCCT: BCCT family tra 22.1 9E+02 0.019 25.1 27.7 22 74-95 74-95 (485)
148 PRK11021 putative transporter; 21.9 8E+02 0.017 24.4 11.4 46 136-181 246-291 (410)
149 PF03348 Serinc: Serine incorp 21.7 1.3E+02 0.0027 30.7 4.4 13 72-84 355-367 (429)
150 cd08764 Cyt_b561_CG1275_like N 21.5 3.4E+02 0.0073 24.6 6.6 75 295-376 48-122 (214)
151 PF10856 DUF2678: Protein of u 21.0 1.2E+02 0.0027 24.2 3.2 60 401-462 36-96 (118)
152 PF03547 Mem_trans: Membrane t 20.3 3.4E+02 0.0073 26.9 7.2 15 303-317 365-379 (385)
No 1
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.4e-56 Score=454.45 Aligned_cols=403 Identities=20% Similarity=0.311 Sum_probs=318.3
Q ss_pred CCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhH
Q 011265 73 EGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKI 152 (490)
Q Consensus 73 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~ 152 (490)
.++|..++.+|++|+++|+|+|++|+||+++||++|++++++++.++.|+.+++.+++++.+.++|+|++++++||++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHH
Confidence 47799999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Q 011265 153 LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVA 232 (490)
Q Consensus 153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 232 (490)
++++.+.+.++|+|++|+++++|.++..+...+. +++.+ ..+..|.+ +.++.+++++|++++|+++.++++|.+++.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-~~~~~-~~~~~r~~-~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~ 214 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNA-PDFLK-QKSGNRLL-TSLMWLCFMLPLVIPRHIDSLRYVSTIAVS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cchhh-hccCcEEe-eeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence 9999999999999999999999998875543221 11111 11122322 223444678999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCC----CCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHH
Q 011265 233 LAVVFVVVCFFIAFIKLVEGKLDPPRMS----PDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVG 308 (490)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 308 (490)
+.+..++.+++....+...+..++.... ++........+++.++++++|||.||.+.|++++|||||+++|+.++.
T Consensus 215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~ 294 (467)
T PTZ00206 215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAS 294 (467)
T ss_pred HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHH
Confidence 4443333332222221111111111100 011011112357789999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 011265 309 RLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEG 388 (490)
Q Consensus 309 ~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~~~ 388 (490)
..++.+++++|.++|++||+.||++++++++.|+++.+ +....+.++++.+.++++||++.+|+|+.+++.+..+
T Consensus 295 ~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~ 369 (467)
T PTZ00206 295 TIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence 99999999999999999999999999999999995321 4566788888999999999999999999999886433
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcC-CCCCChhhHHHHHHHHH
Q 011265 389 SAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKE-GPGLSLGEKFLSGLMLV 467 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 467 (490)
.++ ..++++...+..+++.++++|+++|+++.+++++||++++.++|++|+++|++.... .+...+++++.++++++
T Consensus 370 ~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli 447 (467)
T PTZ00206 370 ARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLI 447 (467)
T ss_pred ccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHH
Confidence 322 123344334555666788999999999999999999999999999999999984211 11134455688999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 011265 468 LAIVVSFVGVIGNIYSLE 485 (490)
Q Consensus 468 ~g~~~~v~g~~~~i~~ii 485 (490)
+|++..+.|||+++++.+
T Consensus 448 ~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 448 TGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhheEEecchhHhhHHh
Confidence 999999999999999876
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-55 Score=421.29 Aligned_cols=390 Identities=21% Similarity=0.317 Sum_probs=327.8
Q ss_pred ccCCCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCCCHHHH
Q 011265 68 SAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL------CKATSYGEV 141 (490)
Q Consensus 68 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~------~~~~~y~~l 141 (490)
.++.++..|..++..|+.|.++|+|+|++|+||+++||+.|.+..++++.++.||++.+++|+++ ....+|++.
T Consensus 40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~ 119 (449)
T KOG1304|consen 40 LRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAET 119 (449)
T ss_pred cccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHH
Confidence 33455678999999999999999999999999999999999999999999999999999999743 235667766
Q ss_pred HHHh----------cCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHH
Q 011265 142 VQYA----------LGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFL 211 (490)
Q Consensus 142 ~~~~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (490)
++.+ +||++|.++++.+++.++|.|++|+++++++++++.+. . ....++.+.+++ +..+..
T Consensus 120 ~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~------~-~~~~~s~~~~i~--~~~~~~ 190 (449)
T KOG1304|consen 120 AESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE------H-SPGVLSVRLYIL--IQLPPL 190 (449)
T ss_pred HHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc------c-CCCCccHHHHHH--HHHHHH
Confidence 6544 47899999999999999999999999999999885541 1 122344444443 334678
Q ss_pred hccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHH
Q 011265 212 APLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQP 291 (490)
Q Consensus 212 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 291 (490)
++++++|++|.++..|.++.++.++-+.++ .++..++.. +....|.+ .++.++...+|+.+|||.++.++.|
T Consensus 191 lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii----~~y~~~~~~-~~~~~~~~---~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 191 LLLNLIRNLKILSPFSLFANVFILVGLAII----MYYLVQDLP-PTSDLPAV---TGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHHHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhccC-Cccccccc---cchhhhHHHHHHHHHHhccceEEEe
Confidence 899999999999999999986544444333 334444332 22223323 3466778999999999999999999
Q ss_pred HHHhcccCCccchh---HHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHH
Q 011265 292 IYNELEGRTPQKMN---HVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLIL 368 (490)
Q Consensus 292 i~~~m~~p~~~~~~---~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 368 (490)
++++||+|+ +++ +++..++.++.++|+.+|++||++||+++++.++.|+|++ ++...+|+++++.++.
T Consensus 263 lEn~Mk~P~--~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~-------~l~~~Vkl~~ai~I~l 333 (449)
T KOG1304|consen 263 LENSMKKPQ--KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE-------ILSQTVKLLLAIAIFL 333 (449)
T ss_pred hhhcccChh--hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc-------HHHHHHHHHHHHHHHH
Confidence 999999999 999 9999999999999999999999999999999999999995 8999999999999999
Q ss_pred hhhhhhhHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhh
Q 011265 369 VFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLR 448 (490)
Q Consensus 369 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~ 448 (490)
++|+++++..+.+++.+.++-.+. ++++.....|..+++.++.+|.++|+++.+++++|+++++.+++++|++++++.+
T Consensus 334 s~pLQ~yv~~eIi~~~i~~k~~~~-~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~ 412 (449)
T KOG1304|consen 334 TYPLQFYVPIEIIEPGIRKKFSEN-RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITF 412 (449)
T ss_pred cCchhhhhhHHHHHHhHHHhcCcc-hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHh
Confidence 999999999999998765444321 2344446789999999999999999999999999999999999999999999998
Q ss_pred cCCC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011265 449 KEGP-GLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSL 484 (490)
Q Consensus 449 ~~~~-~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~i 484 (490)
+.+. ...+|+.+.+.+++++|++.++.|||.++.++
T Consensus 413 ~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 413 YPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred cccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 8664 35568899999999999999999999999875
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-50 Score=397.31 Aligned_cols=395 Identities=22% Similarity=0.349 Sum_probs=324.1
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCCCHHHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLC------KATSYGEVVQY 144 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~------~~~~y~~l~~~ 144 (490)
.+++.|++++.++.++.++|.|+|++|+|++++||+.|++++++.++++.||..+|.+|.+.. +.++|.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 455789999999999999999999999999999999999999999999999999999997543 25669999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCc-ccchhHHHHHHHHHHHHhccccccchhhh
Q 011265 145 ALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKG-MWDHRKLLILIVLVVFLAPLCALDRIESL 223 (490)
Q Consensus 145 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 223 (490)
+||+++++++.+++.+.+|++|+.|.+..+|+++.+.+.... +. ..+.+.++ ++..++.+|++++|+++.+
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~------~~~~l~~~~f~--iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSL------NDNSLDKQYFI--IIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ccccccceehh--hhHHHHHHHHHHCCCcchh
Confidence 999999999999999999999999999999999986554322 11 22233443 3444689999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccc
Q 011265 224 SMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQK 303 (490)
Q Consensus 224 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 303 (490)
+++|..+.+.++.+..+............. .+....+..... ... +++++++.|+|++|..+|+++++||+|+ +
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~-~~~~~~~~~~~~-~~~--f~a~g~iaFaf~gH~v~peIq~tMk~p~--~ 259 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFC-APSGGYLDLGTI-PTV--FTALGIIAFAYGGHAVLPEIQHTMKSPP--K 259 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccC-CcccCcccCCCC-cch--hhhhhheeeeecCCeeeeehHhhcCCch--h
Confidence 999999998777777666655544332221 111222211111 111 6999999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 011265 304 MNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDA 383 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~ 383 (490)
|+|++.+++.+++++|+.+++.||++|||+++++++.|+... .|+...+++++.++++.++.+...|+.+.+|+
T Consensus 260 f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p------~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~ 333 (437)
T KOG1303|consen 260 FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPP------TWLIALANILIVLHLIGSYQIYAQPLFDVVEK 333 (437)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCc------hhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 999999999999999999999999999999999999999722 48889999999999999999999999999999
Q ss_pred hhccCCCCcc-ccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhhHHHH
Q 011265 384 LFFEGSAPLL-ESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLS 462 (490)
Q Consensus 384 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
....++.... +....|.+.|..+++.++++|+.+|+|+++++++||+....+++++|+++|++.++.++.. .++..+
T Consensus 334 ~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s--~~~~~~ 411 (437)
T KOG1303|consen 334 LIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFS--PKWLLN 411 (437)
T ss_pred HhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHH
Confidence 8754443111 2333566779999999999999999999999999999999999999999999986554333 344455
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhccc
Q 011265 463 GLM-LVLAIVVSFVGVIGNIYSLESK 487 (490)
Q Consensus 463 ~~~-~~~g~~~~v~g~~~~i~~ii~~ 487 (490)
+.+ +++|+++.+....++++.++.+
T Consensus 412 ~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 412 WVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 555 7888888888888888887753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.1e-52 Score=425.00 Aligned_cols=393 Identities=27% Similarity=0.463 Sum_probs=323.8
Q ss_pred CCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHHhcCC
Q 011265 73 EGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL----CKATSYGEVVQYALGR 148 (490)
Q Consensus 73 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~~~y~~l~~~~~G~ 148 (490)
|+.|+++++++++|+++|+|+|++|++|+++||++|++++++.+.++.||.+++.|+.++ .+..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999864 5799999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
++++++++++.+.++|.+++|+++.+|.+.++.+.. .++... .+.. +.++..++++|++++|+++.+++.+.
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~------~~~~~~-~~~~-~~~i~~~i~~pls~~~~l~~l~~~s~ 152 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSF------FGDLFI-SRYV-WIIIFALIVLPLSFLKNLKSLRYLSI 152 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeecccccc------cccccc-cccc-cccccccccccccccchhhHHHHHhh
Confidence 999999999999999999999999999998855432 111111 2222 33445578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCc-cchhHH
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTP-QKMNHV 307 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~~~~~ 307 (490)
++.++...++.+...... ....++..+.. .++.....++.+++.++++++|||.+|+++|++++|||+|++ +|++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 230 (409)
T PF01490_consen 153 LGLFSIFYFIVIVVIYII-SYGPGEPSGVP-SPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKV 230 (409)
T ss_pred hhhhccceeeeeecceee-eeecccccccc-cccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccccee
Confidence 999644432112211111 11111111111 111223456678999999999999999999999999999995 566699
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 011265 308 GRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFE 387 (490)
Q Consensus 308 ~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~~ 387 (490)
...++.+++++|+++|+.||++||++++++++.|++++ +++..++++++.++++.++|++.+|.|+.+++.+.+
T Consensus 231 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~------~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~ 304 (409)
T PF01490_consen 231 LSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND------DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFK 304 (409)
T ss_pred eeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc------ccccccccccchhhhhhccccccchhHhhhhhheec
Confidence 99999999999999999999999999999999999987 467889999999999999999999999999998865
Q ss_pred C-------CCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhh--
Q 011265 388 G-------SAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGE-- 458 (490)
Q Consensus 388 ~-------~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~-- 458 (490)
+ ......++.++...|..++..++++|..+|+++.+++++|++++..++|++|+++|+|.+++++...++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~ 384 (409)
T PF01490_consen 305 RAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWI 384 (409)
T ss_pred cccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeeh
Confidence 3 1111234556677899999999999999999999999999999999999999999999987764322222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Q 011265 459 -KFLSGLMLVLAIVVSFVGVIGNI 481 (490)
Q Consensus 459 -~~~~~~~~~~g~~~~v~g~~~~i 481 (490)
....++.+++|++.++.|+|+++
T Consensus 385 ~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 385 LSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhccceEEEEEeeehhHHhHHHHc
Confidence 35678899999999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=9.4e-48 Score=387.71 Aligned_cols=386 Identities=15% Similarity=0.122 Sum_probs=306.2
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cC--C-------CC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL----CK--A-------TS 137 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~--~-------~~ 137 (490)
..++.+..++.+++++..+|+|+|+||+||+++||++|++++++.++++.||++++.++..+ .+ . .+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999986421 11 1 25
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccc
Q 011265 138 YGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCAL 217 (490)
Q Consensus 138 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 217 (490)
|.|+++..+||+++.+..+...+++++.|+.|++..++.+..+. ..++.+.+.+ +..++++|++++
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~------------~~~~~~~~~~--i~~~v~~~~~~i 187 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN------------DNLDKRTWTY--IFGACCATTVFI 187 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC------------CCcCCCeEEe--ehHHHHHHHHHc
Confidence 78999999999999999999999999999999998887765421 1122333332 223467778899
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcc
Q 011265 218 DRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELE 297 (490)
Q Consensus 218 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 297 (490)
|++++++++|.+++.+++...+.+++.... ++..+. .+ .+...++..++.++++++|+|.+|..+|++++|||
T Consensus 188 ~sl~~l~~~S~ig~~~tl~~av~i~i~~i~---~~~~~~---~~-~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~ 260 (473)
T PLN03074 188 PSFHNYRIWSFLGLLMTTYTAWYMTIAALS---HGQVEG---VK-HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW 260 (473)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCC---CC-CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhcc
Confidence 999999999999986444332222222211 111111 11 11123566777888899999999999999999999
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCc--hhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhh
Q 011265 298 GRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTE--SDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHF 375 (490)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 375 (490)
||+ +++++...+...+..+|+.+|+.||++|||+++ ++.++|+|++ .+...++.++.++++.+||++.+
T Consensus 261 ~P~--~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~-------~~~~~~~~~~~i~~~~sy~l~~~ 331 (473)
T PLN03074 261 KPQ--KFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS-------GWRDAAVILMLIHQFITFGFACT 331 (473)
T ss_pred Chh--cccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc-------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999865 4667778864 34678899999999999999999
Q ss_pred HHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCC----
Q 011265 376 SLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEG---- 451 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~---- 451 (490)
|+.+.+|+....+.. .....+++.|..+++.++++|..+|+|+.+++|+||++++.++|++|+++|++.++++
T Consensus 332 p~~~~~e~~~~~~~~---k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~ 408 (473)
T PLN03074 332 PLYFVWEKAIGVHDT---KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQ 408 (473)
T ss_pred hHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 999988887533211 2344457789999999999999999999999999999999999999999999866543
Q ss_pred C-------CCCh--hhHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCC
Q 011265 452 P-------GLSL--GEKFLSGLMLVL-AIVVSFVGVIGNIYSLESKSD 489 (490)
Q Consensus 452 ~-------~~~~--~~~~~~~~~~~~-g~~~~v~g~~~~i~~ii~~~~ 489 (490)
+ ..++ +..+.+++++++ |++.++.|+|+++++|+++.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 409 NAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred hcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 0 1222 246899999875 555578999999999998765
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=373.92 Aligned_cols=407 Identities=33% Similarity=0.541 Sum_probs=341.3
Q ss_pred CCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchh
Q 011265 72 NEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAK 151 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~ 151 (490)
+++.|...++++++|+++|+|++++|+||++.|.++|++++.++++++.++.+++.++.++.+.++|+++++..+|+.++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~ 82 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK 82 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence 45679999999999999999999999999999999999999999999999999999999998888999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHH
Q 011265 152 ILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASV 231 (490)
Q Consensus 152 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 231 (490)
....+.......| +++|+++++|.+...... ....++.+.+ |..|.+.+.+..+.++.|+++.|+++++++.|.+++
T Consensus 83 ~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~-~~~~~~~~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~ 159 (411)
T KOG1305|consen 83 VDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRS-LFLDEEGGSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSL 159 (411)
T ss_pred eeehhhHHhhhcc-ceEEEEEEccccchhhhh-cccccccccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666666666666 699999999999853332 2223333333 666766556677789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHH
Q 011265 232 ALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLT 311 (490)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 311 (490)
++...++++++...+. .+...++..+.......+++.+.++++++|||.||+|..++++|||||+++|+.++...+
T Consensus 160 ~~~~~fv~~vv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~ 235 (411)
T KOG1305|consen 160 ASVVYFVVLVVYKYFQ----GPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIA 235 (411)
T ss_pred HHHHHHHHHHHHHHHh----cccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHH
Confidence 7665555554443322 111112222223333334678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCC
Q 011265 312 TILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAP 391 (490)
Q Consensus 312 ~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~~~~~~ 391 (490)
...+..+|..+|.+||+.|||.+.+|++.++++..+....++....+|..+.++++..+|+..+|+|.++++..++.+.+
T Consensus 236 ~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~ 315 (411)
T KOG1305|consen 236 IILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPG 315 (411)
T ss_pred HHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999875332222346899999999999999999999999999988776653
Q ss_pred -ccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhhHHHHHHHHHHHH
Q 011265 392 -LLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAI 470 (490)
Q Consensus 392 -~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 470 (490)
...++.|+..++..++....+.|+++|+++.+.+++||+++..++|++|+++|++.+++ +.+++...+...++++
T Consensus 316 ~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~----~~~~~~~~~~~~~~~~ 391 (411)
T KOG1305|consen 316 LTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK----KSREPLGALIFLILGV 391 (411)
T ss_pred CCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc----ccccchHHHHHHHHHH
Confidence 24578899999999999999999999999999999999999999999999999998765 4577888889999999
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 011265 471 VVSFVGVIGNIYSLESKSD 489 (490)
Q Consensus 471 ~~~v~g~~~~i~~ii~~~~ 489 (490)
...+.|+...+.++..+..
T Consensus 392 ~~~i~~~~~~i~~~~~~~~ 410 (411)
T KOG1305|consen 392 LLSIIGVAVMIYDLLAKNA 410 (411)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999887643
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3e-44 Score=325.63 Aligned_cols=387 Identities=17% Similarity=0.246 Sum_probs=317.8
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------CCCCHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLC--------KATSYGEVV 142 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~--------~~~~y~~l~ 142 (490)
...+.+.+++..|+.|++-|.=+++||+|...+||+ ++..++.++.+++||+.++++|..+. .+++|.+++
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA 191 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIA 191 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHH
Confidence 346899999999999999999999999999999985 99999999999999999999997543 278999999
Q ss_pred HHhcCCc-hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchh
Q 011265 143 QYALGRP-AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIE 221 (490)
Q Consensus 143 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 221 (490)
..+++|. |.+.+.+++.+.+..+|+.|.++.+|.+.+.++... .+.+.|++ +.. ..++|.+++|+++
T Consensus 192 ~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~s----------vd~~sWm~-i~~-a~LLpc~FLk~Lk 259 (524)
T KOG4303|consen 192 DFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLS----------VDKASWMM-ITS-ASLLPCSFLKDLK 259 (524)
T ss_pred HHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCC----------ccccchhh-hhh-HHHhhhHHHHHHH
Confidence 9999875 558899999999999999999999999987554322 22344443 333 4788999887776
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCC
Q 011265 222 SLSMSSAASVALAVVFVVVCFFIAFIKLVE-GKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300 (490)
Q Consensus 222 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 300 (490)
..+ -++++|++.-+++-++...|.... +++.+. .+.-..+..+++..++.++|+|..|.-+|++...|+||+
T Consensus 260 ~VS---~lSf~ct~sH~viN~i~v~YCLs~~~dW~ws----kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps 332 (524)
T KOG4303|consen 260 IVS---RLSFFCTISHLVINLIMVLYCLSFVSDWSWS----KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS 332 (524)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccce----eEEEEEEcccCceEEEEEEEeeeceeeccccccccCChh
Confidence 554 445444444444444444444331 222211 122223445677889999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 011265 301 PQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQT 380 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~ 380 (490)
++..++..+-+..+++-.++|.+||++||+.++..|++|+|+. .+..+++++..+..+.+||+-++...+.
T Consensus 333 --~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q-------sfk~~VN~fLV~KALLSYPLPfyAAvel 403 (524)
T KOG4303|consen 333 --QFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ-------SFKILVNLFLVVKALLSYPLPFYAAVEL 403 (524)
T ss_pred --HheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc-------chhhhhhHHHHHHHHHcCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999984 5678899999999999999999999999
Q ss_pred HHHhhccCCCCcc--------ccchhh-HHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCC
Q 011265 381 VDALFFEGSAPLL--------ESRKRS-LALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEG 451 (490)
Q Consensus 381 ~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~ 451 (490)
+++-++.+.++.. .+.+.| +..|+.+++.+.+.|+.+|.|..+++++|++.+..++|++|++|++++.++.
T Consensus 404 Le~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~ 483 (524)
T KOG4303|consen 404 LENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT 483 (524)
T ss_pred HHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh
Confidence 9998876543321 112223 4568899999999999999999999999999999999999999999987765
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 011265 452 PGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESKS 488 (490)
Q Consensus 452 ~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~ii~~~ 488 (490)
+...++.....++.+|..+++.|.|.+.+++++..
T Consensus 484 --L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~ 518 (524)
T KOG4303|consen 484 --LNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAI 518 (524)
T ss_pred --hhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHH
Confidence 66678899999999999999999999999998754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=273.27 Aligned_cols=395 Identities=21% Similarity=0.233 Sum_probs=293.7
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKAT--SYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~--~y~~l~~~~~G~ 148 (490)
..++.+..++++++.+++||+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.+.. ++.+++++.+||
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~ 84 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGK 84 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCc
Confidence 455779999999999999999999999999999999999999999999999999999999887655 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+++++.++++.+.+|+.+.+|.+..+|.+.+.+++ ..+.+. ..|.....+. +.++.++++.++...++..+.
T Consensus 85 ~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~------~~~~~~-~~r~~~~lif-~~~~~~l~~~~~~~~lk~ts~ 156 (415)
T COG0814 85 KGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGN------QFGLNP-LPRKLGSLIF-ALVLAFLSWLGTLAVLKITSL 156 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHh------hcccCC-cchHHHHHHH-HHHHHHHHHhchhHHHHHHHH
Confidence 99999999999999999999999999999874432 222111 2344444333 346677999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHH
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVG 308 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 308 (490)
+.......+++.+ .+.....+.+.....|..+ ...+.++..++|+++|||.+|+++|++.+|||++++++.+|+.
T Consensus 157 l~~~~v~~~~~l~----~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 157 LVFGKVIYLVLLV----VYLIPHWNPANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHH----HHHhcccCHHHHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 8875333332222 2333332222112222221 3466778899999999999999999999999999955699999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCc-------ccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 011265 309 RLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGI-------GYSTALNYIVRVGYIFHLILVFPVVHFSLRQTV 381 (490)
Q Consensus 309 ~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~ 381 (490)
.++..+..++|..++.++|..+|+.+.++++.+.++++.. ...+.+....+++..+.+.+++--.....++..
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 9999999999999999999999999999999999876311 111224444455555555554333334445555
Q ss_pred HHhhccCCCC---ccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhh
Q 011265 382 DALFFEGSAP---LLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGE 458 (490)
Q Consensus 382 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~ 458 (490)
++...+++.+ ...............+......+...+..+.+++.+|+.....+.++.|...+.|....+.. +.+
T Consensus 312 ~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~--~g~ 389 (415)
T COG0814 312 ADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY--GGN 389 (415)
T ss_pred hHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec--CCC
Confidence 5555431111 11122223445666677788888899999999999999999999999999988876544321 121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011265 459 KFLSGLMLVLAIVVSFVGVIGN 480 (490)
Q Consensus 459 ~~~~~~~~~~g~~~~v~g~~~~ 480 (490)
+....+++++|++.++.-.+..
T Consensus 390 ~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 390 FLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 2577788888888887766654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=1.3e-23 Score=208.02 Aligned_cols=373 Identities=19% Similarity=0.250 Sum_probs=256.1
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCchhH
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPAKI 152 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~ 152 (490)
+.+.+++.+.+..++||+|+|+||.+.+..|+.++++++++...+.++++.++.|...+ .+..+|.+++++.+||++++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 46789999999999999999999999999999999999999999999999999998754 56999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Q 011265 153 LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVA 232 (490)
Q Consensus 153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 232 (490)
+..++..+..|+.+++|..-.++.+++.+++.. + ..+. +.....+.. ++...+.... .+.....+.+-+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~------~-~~~~-~~~~~~~f~-~i~~~iv~~g-~~~v~~~n~~lv~ 151 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQL------G-TDLS-PWLSSLLFT-IIFGGIVYFG-TKAVDRINRVLVF 151 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc------C-CCCc-HHHHHHHHH-HHHHHHHHhh-HHHHHHHHHHHHH
Confidence 999999999999999999999999887443221 1 0111 111111111 1111111111 1222333322221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHH
Q 011265 233 LAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTT 312 (490)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 312 (490)
..+............+ .+........+...++...+.++++.++||..|+.+|++.+.+++.+ ||.+|++..+.
T Consensus 152 ---~~i~~~~~l~~~~~p~--~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~-~k~~~ai~~Gs 225 (394)
T PF03222_consen 152 ---GMIISFIILVVYLIPH--WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP-KKIRKAIIIGS 225 (394)
T ss_pred ---HHHHHHHHHHHHHhhh--cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH-HHHHHHHHHHH
Confidence 1111111111112222 11111111112234677788999999999999999999999998443 59999999999
Q ss_pred HHHHHHHHHHHhHHHhhc-----------CCCCch--hhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 011265 313 ILCIVVYSSTAISGYLLF-----------GKDTES--DVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQ 379 (490)
Q Consensus 313 ~~~~~~Y~~~g~~gy~~f-----------G~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~ 379 (490)
.+..++|++.-...-... +++..+ ..+.+...+ .++..+..++-.+.+.+||-=....++|
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~i~~~~~~fa~~Ai~TSFlGv~lgl~d 299 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGS------PWISILGSIFAFFAIATSFLGVYLGLFD 299 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988644333211 111111 122222222 3667778888889999999988999999
Q ss_pred HHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCc-hhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCC---
Q 011265 380 TVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPS-IWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLS--- 455 (490)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~--- 455 (490)
.+.+.+..++. .+.| .....+..++++++|...|+ |...+++.| .....+..++|+++.+|.|++++..+
T Consensus 300 ~l~d~~k~~~~----~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~ 373 (394)
T PF03222_consen 300 FLADLFKLKNN----SSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRV 373 (394)
T ss_pred HHHHHHcCCcc----ccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEE
Confidence 99998755222 1222 22345566788999999987 779999999 88899999999999999887664332
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 011265 456 LGEKFLSGLMLVLAIVVSF 474 (490)
Q Consensus 456 ~~~~~~~~~~~~~g~~~~v 474 (490)
...+....+++++|++..+
T Consensus 374 ~gg~~~l~~~~~~~i~iii 392 (394)
T PF03222_consen 374 PGGNFTLLLVIIFGILIII 392 (394)
T ss_pred eCcHHHHHHHHHHHHHHHH
Confidence 2245666666666665543
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=1.4e-22 Score=198.62 Aligned_cols=379 Identities=15% Similarity=0.191 Sum_probs=258.4
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 149 (490)
++++.+.+++.+.+..++||+|+|++|.+-++.|+.+++++++++.....||+.++.|...+ .+..++..++++.+||.
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~ 86 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKG 86 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH
Confidence 45678999999999999999999999999999999999999999999999999999998754 56888999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhcccc--ccchhhhhhhh
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCA--LDRIESLSMSS 227 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~--~~~l~~l~~~s 227 (490)
++.+..++..+.+|+.+++|..-.++.+.+..++.+. +.....-.+...++.-.+.+ .|..+.+...-
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~----------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l 156 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL----------NVPARAAGFGFALLVAFVVWLSTKAVSRMTAIV 156 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC----------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999998774432111 00111111121112222222 23333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhH
Q 011265 228 AASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSP-DFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNH 306 (490)
Q Consensus 228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 306 (490)
..+.+..+. ..+... .. +.+...... .......+...+.+++++++||+.|+++|++.+.+++.. ||.+|
T Consensus 157 ~~~~i~~f~----~~~~~l---~~-~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~-~kir~ 227 (414)
T PRK10483 157 LGAKVITFF----LTFGSL---LG-HVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP-KTIVK 227 (414)
T ss_pred HHHHHHHHH----HHHHHH---Hh-hcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH-HHHHH
Confidence 222221111 111111 11 111111110 011122344577899999999999999999999987433 49999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcC-----------CCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhh
Q 011265 307 VGRLTTILCIVVYSSTAISGYLLFG-----------KDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHF 375 (490)
Q Consensus 307 ~~~~~~~~~~~~Y~~~g~~gy~~fG-----------~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 375 (490)
++..+..+..++|++.=..+....+ ++. +..+..+.+..+ +.++..+..++-.+.+.+||-=...
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~---~~~i~~~~~~Fa~~Ai~TSFlGv~L 303 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLN---SRSLDLLLVVFSNFAVASSFLGVTL 303 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999996554444333 111 111122221111 1356677888888899999988889
Q ss_pred HHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCc-hhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCC--
Q 011265 376 SLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPS-IWTAFKFTGATTAVSLGFIFPPLVALRLRKEGP-- 452 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~-- 452 (490)
.++|.+.+.+..+++. ..| .....+..+++.+++...|+ |-..++..|.. +..+..++|+++.+|.||+.+
T Consensus 304 GL~d~l~D~~k~~~~~----~~r-~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~ 377 (414)
T PRK10483 304 GLFDYLADLFGFDDSA----MGR-FKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSP 377 (414)
T ss_pred HHHHHHHHHhCCCCcc----ccc-eeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999987654432 122 22234566899999999998 88899999966 667778999999999987522
Q ss_pred -CCChhhHHHHHHHHHHHHHHHHHHHH
Q 011265 453 -GLSLGEKFLSGLMLVLAIVVSFVGVI 478 (490)
Q Consensus 453 -~~~~~~~~~~~~~~~~g~~~~v~g~~ 478 (490)
+.-...+....+++++|++..+.-..
T Consensus 378 ~y~v~Gg~~~l~~~~~~g~~~i~~~i~ 404 (414)
T PRK10483 378 KFRVWGGKPMIVLILLFGVGNALVHIL 404 (414)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHH
Confidence 11223455556777777766655443
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=5.5e-23 Score=202.48 Aligned_cols=372 Identities=19% Similarity=0.272 Sum_probs=256.1
Q ss_pred chHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCchhHHH
Q 011265 76 GVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPAKILS 154 (490)
Q Consensus 76 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~ 154 (490)
+..++.+.+..+.||+|+|++|.+....|++++++++++++.+..|++.++.|...+ .+..++.+++++.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 778899999999999999999999999999999999999999999999999997644 4568899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHH
Q 011265 155 EICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALA 234 (490)
Q Consensus 155 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 234 (490)
.++..+..|..+.+|....++.+++..+ ++.+.+. +.+...+.+..+ ... ..+.. .+...+.+.+-+...
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~------~~~~~~i-~~~~~~l~F~~~-~~~-iv~~g-~~~v~~~n~~L~~~~ 153 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSIS------DWTGISM-SPTAGVLLFTLV-AGG-VVCVG-TSSVDLFNRFLFSAK 153 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHH------HhccCCC-ChHHHHHHHHHH-HHH-HHhcc-HHHHHHHHHHHHHHH
Confidence 9999999999999999998888876332 2222111 112222222111 111 22111 122222222222111
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHH
Q 011265 235 VVFVVVCFFIAFIKLVEGKLDPPRMS--PDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTT 312 (490)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 312 (490)
++..+.. ..+-.. +.+..... | .+. .-.+.+++++++||+.|+++|++.+.+++.. ||.+|++..+.
T Consensus 154 ii~~~~~---~~~l~p--~~~~~~L~~~~-~~~----~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs 222 (403)
T PRK15132 154 IIFLVVM---LALMMP--HIHKVNLLTLP-LQQ----GLALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGS 222 (403)
T ss_pred HHHHHHH---HHHHHH--hcCHHHHhcCC-ccc----cHHHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHH
Confidence 1111111 111111 12211111 1 111 1267899999999999999999999987443 69999999999
Q ss_pred HHHHHHHHHHHhHHHhhcCCCC----------chhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 011265 313 ILCIVVYSSTAISGYLLFGKDT----------ESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVD 382 (490)
Q Consensus 313 ~~~~~~Y~~~g~~gy~~fG~~~----------~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~ 382 (490)
.+..++|++.-..+....+.+. -++++..+.+.. ...++..++.++-.+.+.+||-=....++|.+.
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 299 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVV---ASPHVELAVHLFADLALATSFLGVALGLFDYLA 299 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998776666554221 112223222211 114677788888888999999888889999999
Q ss_pred HhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCc-hhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChh---h
Q 011265 383 ALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPS-IWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLG---E 458 (490)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~---~ 458 (490)
+.+..++++ .. +.....+..+++++++...|+ |....++.|. ....+.+++|+++.+|.|++++..+.+ .
T Consensus 300 d~~~~~~~~----~~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg 373 (403)
T PRK15132 300 DLFQRRNTV----GG-RLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGG 373 (403)
T ss_pred HHHccCccc----cC-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCC
Confidence 987543321 12 233455677899999999997 6778888885 577889999999999988755112222 6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011265 459 KFLSGLMLVLAIVVSFVGV 477 (490)
Q Consensus 459 ~~~~~~~~~~g~~~~v~g~ 477 (490)
+...++++++|++..+.-.
T Consensus 374 ~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 374 RPALALVFLCGIAVIGIQF 392 (403)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7788888888888776544
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=2.4e-23 Score=208.18 Aligned_cols=349 Identities=16% Similarity=0.210 Sum_probs=245.2
Q ss_pred HHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCHHHHHHHhcCCchhHHHHHHHH
Q 011265 81 VFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLC-KATSYGEVVQYALGRPAKILSEICII 159 (490)
Q Consensus 81 ~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~~~~~ 159 (490)
+..++++++|+|+|++|.++++.|+.++++.+++.+.++.++..++.|...+. +..++.+++++.+||++++++.+...
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999987554 57899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHH
Q 011265 160 LNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVV 239 (490)
Q Consensus 160 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 239 (490)
+.++..+.+|.+..++.+...++ .+.... +. +.. ..+... +++.....+..+....++.+.+...+..++
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~------~~~~~~-~~-~~~-~~~~~~-~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~ 152 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIG------EYFGFP-WS-ARA-IVLIFT-VLFGSFVWLSTSAVDRITRVLIFGKIIAFA 152 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHH------HhcCCC-cc-HHH-HHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876432 111111 11 122 222222 223333444566667777766653333322
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHHHHHHHHH
Q 011265 240 VCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVY 319 (490)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y 319 (490)
..++... .+ .+..+..|.......+.++..+++...++|++|.+++++.+|++|+ +||.+|+...+..++.++|
T Consensus 153 ~~ii~~~---~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY 226 (381)
T TIGR00837 153 LVFSGLL---PH--VKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLY 226 (381)
T ss_pred HHHHHHH---hh--ccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHH
Confidence 2222211 11 1111112211111245567789999999999999999999999866 4799999999999999999
Q ss_pred HHHHhHHHhhcCCCCchhhhcCCccccC-------cccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCCc
Q 011265 320 SSTAISGYLLFGKDTESDVLTNFDKDLG-------IGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPL 392 (490)
Q Consensus 320 ~~~g~~gy~~fG~~~~~~il~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~~~~~~~ 392 (490)
+++.......++.+.-.+.....++.+. .....+...++..+-.+.+.+++.-....+++.+.+.+..++++
T Consensus 227 ~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~- 305 (381)
T TIGR00837 227 ILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK- 305 (381)
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-
Confidence 9988776666553321111111111000 00012456777888888999999999999999988776543321
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhcCchh-HHHHHhhhhhhhhHHHhhhHHHHHHhhcCC
Q 011265 393 LESRKRSLALTVVLLVLIYFGSTMIPSIW-TAFKFTGATTAVSLGFIFPPLVALRLRKEG 451 (490)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~ia~~~p~~~-~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~ 451 (490)
..|. ....+..+++.++|.+.|+.. ..++..| +++..+.+++|+++++|.||++
T Consensus 306 ---~~~~-~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 306 ---KGRF-KTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred ---CCCc-hhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 2233 335566688889999999865 8899999 8888899999999999987654
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.92 E-value=1.5e-22 Score=197.95 Aligned_cols=380 Identities=17% Similarity=0.207 Sum_probs=253.5
Q ss_pred CCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCch
Q 011265 72 NEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPA 150 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~ 150 (490)
+++.+...+.+.+..++||+|+|++|.+-++.|+.++++++++......||+.++.|...+ ++..++..++|+.+||++
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g 85 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTW 85 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 3455888899999999999999999999999999999999999999999999999998755 468889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHH
Q 011265 151 KILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAAS 230 (490)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 230 (490)
+.+..++..+.+|+.+++|..-.++.+++..++ ..+ .+.......+...++.-.+.+.. .+...+.+.+-
T Consensus 86 ~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~------~~~---~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l 155 (415)
T PRK09664 86 NIISGITVAFVLYILTYAYISANGAIISETISM------NLG---YHANPRIVGICTAIFVASVLWIS-SLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhh------hcc---CCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 999999999999999999999999999774432 111 01011111112222222222222 12223333222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCch-hhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHH
Q 011265 231 VALAVVFVVVCFFIAFIKLVEGKLDPPRMS--PDFGSKK-AILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHV 307 (490)
Q Consensus 231 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--p~~~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 307 (490)
....++ ..+..+... . .+.+..... +...... .+...+.+++++++||+.|+++|++.+.+++.. ||.+|+
T Consensus 156 ~~~~ii-~f~~~~~~l--~--~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~-~~~~ka 229 (415)
T PRK09664 156 LGLKII-SFVIVFGSF--F--FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK-DKLIKS 229 (415)
T ss_pred HHHHHH-HHHHHHHHH--h--hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH-HHHHHH
Confidence 211111 111111111 1 111111111 1011011 123466899999999999999999999987443 599999
Q ss_pred HHHHHHHHHHHHHHHHh--HHHh---------hcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhH
Q 011265 308 GRLTTILCIVVYSSTAI--SGYL---------LFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFS 376 (490)
Q Consensus 308 ~~~~~~~~~~~Y~~~g~--~gy~---------~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 376 (490)
+..+..+..++|++.=. .|-. ..|++....+. .+... ..+.++..+..++-.+.+.+||-=....
T Consensus 230 Il~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~-s~~~~---~~~~~i~~~~~~Fa~~Ai~TSFlGv~LG 305 (415)
T PRK09664 230 VVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVK-SFLGT---KQHGIIEFCLLVFSNLAVASSFFGVTLG 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHH-HHHhh---ccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977532 2311 12222222111 11110 0113677788888888999999888889
Q ss_pred HHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCc-hhHHHHHhhhhhhhhHHHhhhHHHHHHhhcC-CC--
Q 011265 377 LRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPS-IWTAFKFTGATTAVSLGFIFPPLVALRLRKE-GP-- 452 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~-~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~-~~-- 452 (490)
++|.+.+.+..+++. ..| .....+..+++.+++.+.|+ |-..++..|.. +..+.-++|+++-+|.|++ ++
T Consensus 306 L~D~l~D~~~~~~~~----~~r-~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~ 379 (415)
T PRK09664 306 LFDYLADLFKIDNSH----GGR-FKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQM 379 (415)
T ss_pred HHHHHHHHhCCCCcc----ccc-eeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCC
Confidence 999999987554432 122 22234566899999999998 88999999985 5678889999999999876 21
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHH
Q 011265 453 GLSLGEKFLSGLMLVLAIVVSFVGV 477 (490)
Q Consensus 453 ~~~~~~~~~~~~~~~~g~~~~v~g~ 477 (490)
+.-...+....+.+++|++..+.-.
T Consensus 380 y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 380 FTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 2223466777777788877766544
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.89 E-value=1.7e-19 Score=176.53 Aligned_cols=385 Identities=15% Similarity=0.174 Sum_probs=252.0
Q ss_pred HHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHhcCCchhHHHHHH
Q 011265 80 AVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL--CKATSYGEVVQYALGRPAKILSEIC 157 (490)
Q Consensus 80 ~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~~G~~~~~~~~~~ 157 (490)
-...+.++.||+|+|+||-.....|++++++++++...+.+++...+.|...+ .+..++.+++++.+||+++.+..++
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999997644 4578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHH
Q 011265 158 IILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVF 237 (490)
Q Consensus 158 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 237 (490)
.++.+|..+.+|...+.+.+.+...| ..+.... .|. ...++.++++.......+ +.+-+++.+-+. ..
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~------ql~~~~~-~r~-l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~---~~ 171 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWEN------QLGFAPL-NRG-FVALFLLLLMAFVIWFGK-DLMVKVMSYLVW---PF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hcCcCCc-cHH-HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH---HH
Confidence 99999999999998888877652211 1111111 122 222222223333322221 333333322221 11
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCC-----CCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhc----c---cCC--ccc
Q 011265 238 VVVCFFIAFIKLVEGKLDPPRMS-----PDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNEL----E---GRT--PQK 303 (490)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m----~---~p~--~~~ 303 (490)
+++.+...++-.++.+.+..... |+..+......++.+++++++||+.|+++|++...+ + +++ .||
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 11111222222222221111111 111111112346789999999999999999998884 3 223 579
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-------chhhhcC----CccccCc--ccchHHHHHHHHHHHHHHHHhh
Q 011265 304 MNHVGRLTTILCIVVYSSTAISGYLLFGKDT-------ESDVLTN----FDKDLGI--GYSTALNYIVRVGYIFHLILVF 370 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~-------~~~il~~----~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~ 370 (490)
.+|++..+..+..++|++.-+.+....+.+. +.+++.. +++..+. .+...+..+..++-.+.+.+||
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888777765321 1111111 2221000 0002356666677777888888
Q ss_pred hhhhhHHHHHHHHhhcc----CCCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHH
Q 011265 371 PVVHFSLRQTVDALFFE----GSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALR 446 (490)
Q Consensus 371 pl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~ 446 (490)
-=....++|.+..++.+ .+.+....+.........+.+.+++++..-|+.-.+++-+|+.....+.|++|.+..+|
T Consensus 332 lGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~k 411 (443)
T PRK13629 332 FGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRK 411 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 88888888888877631 11111112222334566778889999999999999999888888888999999999888
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 011265 447 LRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIG 479 (490)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~ 479 (490)
.-.-+ +.+.+..+++++++|++......|.
T Consensus 412 vp~l~---~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 412 APSLA---KYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred cHHHH---HhCCCchhHHHHHHHHHHHHHHHHh
Confidence 43221 1233446788888888877665553
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=2.5e-19 Score=177.12 Aligned_cols=374 Identities=16% Similarity=0.196 Sum_probs=247.8
Q ss_pred hHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcCCCCHHHHHHHhcCCchhHHH
Q 011265 77 VAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFS--VLCKATSYGEVVQYALGRPAKILS 154 (490)
Q Consensus 77 ~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~--~~~~~~~y~~l~~~~~G~~~~~~~ 154 (490)
.+.-.+.+.++++|+|+|++|....+.||+..++..++...+.+++..++.|.. .+.+..++.|++++.+||+++.+.
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHH
Confidence 345578899999999999999999999999999999999999999999999974 333479999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHH
Q 011265 155 EICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALA 234 (490)
Q Consensus 155 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 234 (490)
.++..+..+..+.+|....++.+.+...+ ....+. ..+....+.. ++++-.......+.+..++.+-+...
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~------~~~~~~--p~~~i~~lil-v~il~~iv~~G~~~i~r~~~il~~~~ 155 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVN------QLGTAP--PLRGLLSLAL-ILILVAIMSFGEKLLFKIMGPLVFPL 155 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCC--cHHHHHHHHH-HHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 99999999999999998888887663322 111111 1122222222 22222233334555555555554322
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHH----HhcccCC--ccchhHHH
Q 011265 235 VVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIY----NELEGRT--PQKMNHVG 308 (490)
Q Consensus 235 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~p~--~~~~~~~~ 308 (490)
++.++ ...+....+.+.+.....|.. ...+.++..+++..++||.+|+++|++. +|.+||+ .||.+|+.
T Consensus 156 ii~l~---~l~~~lip~~~~~~L~~~p~~--~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i 230 (397)
T TIGR00814 156 VLILV---LLSLYLIPHWNGANLTTFPSF--NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIM 230 (397)
T ss_pred HHHHH---HHHHHHHHHcCHHHHhcCCcc--cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHH
Confidence 22111 112222222221211112211 1245678899999999999999999998 3444344 57999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCCCch-----h--hhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 011265 309 RLTTILCIVVYSSTAISGYLLFGKDTES-----D--VLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTV 381 (490)
Q Consensus 309 ~~~~~~~~~~Y~~~g~~gy~~fG~~~~~-----~--il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~ 381 (490)
..+..+..++|+..-..+....+.+.-. + .+..+.+..+. ..+..+..++..+.+.+++--....++|.+
T Consensus 231 ~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~---~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l 307 (397)
T TIGR00814 231 KGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNA---AWISYAGPIVAIVAISKSFFGHYLGAREGL 307 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCC---cHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999988888877633211 1 12211111111 255666777777788888888888889988
Q ss_pred HHhhccC-CC--CccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhh
Q 011265 382 DALFFEG-SA--PLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGE 458 (490)
Q Consensus 382 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~ 458 (490)
.+.+.+. +. +..+++........++.+.++.++..-|+.-.+++-.|+-....+.|++|.+..+|.-.-++ .+.
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~---~~~ 384 (397)
T TIGR00814 308 NGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKK---YRG 384 (397)
T ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHH---hCC
Confidence 8876211 11 11111222234566777889999999999999999777777778999999999888432221 122
Q ss_pred HHHHHHHHHHHH
Q 011265 459 KFLSGLMLVLAI 470 (490)
Q Consensus 459 ~~~~~~~~~~g~ 470 (490)
+..+++++++|+
T Consensus 385 ~~~~~fv~~~g~ 396 (397)
T TIGR00814 385 RISNVFVTVIGL 396 (397)
T ss_pred CcchheeEeeec
Confidence 234555555553
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.73 E-value=3.6e-14 Score=144.64 Aligned_cols=242 Identities=13% Similarity=0.105 Sum_probs=152.3
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 149 (490)
++|+.|.++.+...+++++|+|++.+|..+++.|- .+++.+++.+++.......+.|...+ ++.......+++.+||+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~ 82 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKS 82 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcc
Confidence 45689999999999999999999999988888885 57788888888888888888887643 34444556678999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 229 (490)
..+++.+...+.......+......+++....+. ..+ ....++.....+.++-....+..+....++.+
T Consensus 83 ~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~--------~~~---~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i 151 (438)
T PRK10655 83 GNFMANYTYGVSLLIANVAIAISAVGYGTELFGA--------TLS---PVQICLATIGVLWLCTVANFGGARITGQISSV 151 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccc---hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999888876655544444444444444332210 000 01111111111122222333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHH
Q 011265 230 SVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGR 309 (490)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 309 (490)
.+...++.+++..+..... .+.+...+.+.|+ ....+.++..++....|+|.+......+.+|+|||+ |+.+|++.
T Consensus 152 ~~~~~l~~l~~~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iPrAi~ 227 (438)
T PRK10655 152 TVWGVIIPVVGLSIIGWFW-FSPSLYVAAWNPH--HLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE-RNVPIAVL 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCcccccCCcCcc--CCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc-ccccHHHH
Confidence 4332222222221111111 1111111111121 111234666778889999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q 011265 310 LTTILCIVVYSSTAISGYL 328 (490)
Q Consensus 310 ~~~~~~~~~Y~~~g~~gy~ 328 (490)
.+..++.++|++.......
T Consensus 228 ~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 228 GGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999987665443
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.70 E-value=6.1e-14 Score=143.37 Aligned_cols=356 Identities=13% Similarity=0.061 Sum_probs=197.1
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++.....++.+||+|++..| .+.+++|- ..++.+++.+++....+..+.|...+ +........+++.+|+
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 456889999999999999999999999 66777785 47777888888898889999997654 5566777789999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
...+++.....+.......+.....+.++....+ . . ..+.+. ...+.++-....+..+..+.++.
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-----------~-~--~~~~~~-~~~~~l~~~lN~~gv~~~~~i~~ 162 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-----------D-V--PTWIWA-AAFFIIINAVNLVNVRLYGETEF 162 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------c-C--cHHHHH-HHHHHHHHHHHHhcchhhhhHHH
Confidence 9999999987776655555555555544432111 0 0 111111 11112222233344444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-CC--C-CCCCCCC-CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccc
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGK-LD--P-PRMSPDF-GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQK 303 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~-~~--~-~~~~p~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 303 (490)
+..+.-+..+++.++..+.....++ .+ . ...+++. ..+..+.++..++....|+|.+........+|+|||+ |+
T Consensus 163 ~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~-k~ 241 (458)
T PRK10249 163 WFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE-KS 241 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh-hH
Confidence 3322111111111111111111111 00 0 0111110 0113466778899999999999999999999999999 88
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhcCCCC----chhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 011265 304 MNHVGRLTTILCIVVYSSTAISGYLLFGKDT----ESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQ 379 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~----~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~ 379 (490)
.+|++..+.....++|.+.........++.. +++...-+.+.. .++......++..+..+.+..-..+...+
T Consensus 242 iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~~sR 317 (458)
T PRK10249 242 IPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD----SNVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC----chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876554433333211 011111111100 01333333444444444443333334444
Q ss_pred HHHHhhccCCCCc------cccchh-hHHHHHHHHHHHHHHHhhcC--chhHHHHHhhhhhhhhHHHhhhHHHHHHhhc
Q 011265 380 TVDALFFEGSAPL------LESRKR-SLALTVVLLVLIYFGSTMIP--SIWTAFKFTGATTAVSLGFIFPPLVALRLRK 449 (490)
Q Consensus 380 ~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~ia~~~p--~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~ 449 (490)
.+...-..+.-|. +.+... -+....++.....++....| .++.++++.+ ....+.|++|++.+++.++
T Consensus 318 ~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 318 MLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVV--ATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4433321111110 011111 22233333222223322333 2445555533 3556889999999999874
No 18
>PRK15049 L-asparagine permease; Provisional
Probab=99.70 E-value=1.5e-13 Score=141.60 Aligned_cols=359 Identities=15% Similarity=0.140 Sum_probs=197.0
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSV-LCKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++.....++.+||+|++..| .+++.+|- .+++.+++.+++....+..+.|... .+........+++.+||
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 456899999999999999999999999 57888885 4577788888888888888888764 45567777888999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+..+++.....+.............+.++... +.+.+ ...+.+.... ++++-.......+....++.
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-------~~~~~-----~~~~~~~~~~-~~l~~~iN~~gvk~~~~i~~ 171 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-------GAFGG-----VPQWVFALAA-LTIVGTMNMIGVKWFAEMEF 171 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCC-----CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999988887664433333333333322110 00000 1112111111 12222233333444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC--C---CCCCC--CCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCc
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGKLDP--P---RMSPD--FGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTP 301 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~---~~~p~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 301 (490)
+..++-++.++..++..+.....+...+ . ....+ -..+..+..++.++....|+|.+...+....+|+|||+
T Consensus 172 ~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~- 250 (499)
T PRK15049 172 WFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ- 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh-
Confidence 3322111111111111111111111100 0 00000 00012344555667789999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcCCC----CchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHH
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFGKD----TESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSL 377 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~----~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 377 (490)
|+.+|++..+...+.++|+..........+.+ ..++...-+... +. .+...+..+...+..+.+..-..+..
T Consensus 251 r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g~---~~~~~ii~~~ilia~~ss~ns~~~~~ 326 (499)
T PRK15049 251 TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-GV---PYIGSIMNIVVLTAALSSLNSGLYCT 326 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-Cc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988766544443311 111111111111 11 13334445555555555554444555
Q ss_pred HHHHHHhhccCCCCc------cccchhh-HHHHHHHHHHHHHHHhhcCc--hhHHHHHhhhhhhhhHHHhhhHHHHHHhh
Q 011265 378 RQTVDALFFEGSAPL------LESRKRS-LALTVVLLVLIYFGSTMIPS--IWTAFKFTGATTAVSLGFIFPPLVALRLR 448 (490)
Q Consensus 378 ~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~ia~~~p~--~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~ 448 (490)
.+.+...-..+.-+. +.+...+ ++...++.....++....|. ++.++++.+ .+..+.|++|++.++++|
T Consensus 327 sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R 404 (499)
T PRK15049 327 GRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLR 404 (499)
T ss_pred HHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 555544322211110 0111222 22333333333233333332 566667654 666788999999999987
Q ss_pred cC
Q 011265 449 KE 450 (490)
Q Consensus 449 ~~ 450 (490)
|+
T Consensus 405 ~~ 406 (499)
T PRK15049 405 KA 406 (499)
T ss_pred Hh
Confidence 64
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.68 E-value=3.9e-13 Score=138.22 Aligned_cols=246 Identities=9% Similarity=0.061 Sum_probs=153.6
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLG-LAVGFVLIIFMGILSEVSVELLVRFSVLCKA--TSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~--~~y~~l~~~~~G 147 (490)
++|+.|.+++++..+++++|+|++.+|....+.| -...++.+++.++........+.|...+.+. ....+..++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 3568999999999999999999999998766544 3334566778888888888888887654433 445556799999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSS 227 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 227 (490)
|+..+++.+...+.......++.....+++....+..+ ... .....+.....+..+-....+..+....++
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~------~~~---~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~ 155 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG------SGN---PVPSILGASVLLWVFTFLVLRGVRQAAFIN 155 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc------CCC---cHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999887765555555555555554443222100 000 011111112212223334455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchh
Q 011265 228 AASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDF--GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMN 305 (490)
Q Consensus 228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 305 (490)
.+..+..+..+++.++..... .+++.......++. .....+..+..++....|+|.+......+.+|+|| + |+.+
T Consensus 156 ~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~-r~iP 232 (473)
T TIGR00905 156 TITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K-SDVG 232 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c-ccch
Confidence 655533222222222222111 11111111111110 11124556778888899999999999999999999 4 7999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHh
Q 011265 306 HVGRLTTILCIVVYSSTAISGYL 328 (490)
Q Consensus 306 ~~~~~~~~~~~~~Y~~~g~~gy~ 328 (490)
|++..+..++.++|++.......
T Consensus 233 rai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 233 KATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988766443
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.66 E-value=1.7e-12 Score=132.55 Aligned_cols=244 Identities=11% Similarity=0.066 Sum_probs=146.8
Q ss_pred CCCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 70 KSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 70 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
+.+|+.+.++.+...+++++|+|++.+|....+.|. ..+..+++.++........+.|.... ++.....+-+++.+||
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~ 83 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGP 83 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCc
Confidence 356789999999999999999999999988887763 35566677777777777777886543 3333444447889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
...+++.....+.......+......++.....+ ....+ + ...+....++.++-.......+....++.
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~---~~~~~~~~~~~~~~~ln~~gvk~~~~i~~ 152 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-------ILKDP-L---VLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCCc-H---HHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 9999888777665443333333333333322111 00001 1 01111111111222233334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHH
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVG 308 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 308 (490)
+..+..++.+++..+..+. ..+++...+. ++ ..+...+..+..++....|+|.+........+|+|||+ |+.+|++
T Consensus 153 i~~~~~~i~l~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-r~iPrai 228 (445)
T PRK10644 153 VATVLALIPIVGIAVFGWF-WFRGETYMAA-WN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCchhccCC-cc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc-cchhHHH
Confidence 4443222212211111111 1121111111 11 11122345666778889999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhh
Q 011265 309 RLTTILCIVVYSSTAISGYLL 329 (490)
Q Consensus 309 ~~~~~~~~~~Y~~~g~~gy~~ 329 (490)
..+..++.++|.+..+.....
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988764433
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.66 E-value=1.6e-12 Score=132.12 Aligned_cols=243 Identities=12% Similarity=0.033 Sum_probs=151.0
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 149 (490)
++|+.+.++.+...++++||+|++.+|...++.|-. .++.+++.++........+.|...+ ++.....+.+++ +||+
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 567899999999999999999999999999888853 6677777778777777888887544 444454555677 7998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 229 (490)
..+++.+......+....++.+...+++....+. . +++ + ... +....++.++-+...+..+....++.+
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~------~-~~~-~--~~~-~~~~~i~~~~~~ln~~gvk~~~~i~~i 149 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPV------L-NDP-I--PAG-IACIAIVWVFTFVNMLGGTWVSRLTTI 149 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------c-CCh-H--HHH-HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888887766544333444444444554332211 0 011 1 111 111111112223344445555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHH
Q 011265 230 SVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGR 309 (490)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~ 309 (490)
..++.++.++...+... ...+.+...+++.+ ....++.++..++....|+|.+.+......+|+|||+ |+.+|++.
T Consensus 150 ~~~~~li~~~~~~i~g~-~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~-r~iPrAi~ 225 (435)
T PRK10435 150 GLVLVLIPVVGTAIVGW-HWFDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK-RTVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc-ccccHHHH
Confidence 44322221111111111 11111000011111 1123466788999999999999999999999999998 79999999
Q ss_pred HHHHHHHHHHHHHHhHHHhhc
Q 011265 310 LTTILCIVVYSSTAISGYLLF 330 (490)
Q Consensus 310 ~~~~~~~~~Y~~~g~~gy~~f 330 (490)
.+..++.++|++.........
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999887655443
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.65 E-value=6.2e-13 Score=136.51 Aligned_cols=361 Identities=11% Similarity=0.114 Sum_probs=197.5
Q ss_pred CCCchHHHHHHHHHHhHhhhhchHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-C-CHHHHHHHhcCCc
Q 011265 73 EGSGVAGAVFNLTTTVIGAGIMALPAA-MKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKA-T-SYGEVVQYALGRP 149 (490)
Q Consensus 73 ~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~-~-~y~~l~~~~~G~~ 149 (490)
|+.+.++.+...++++||+|++.+|.. .+.+|....++.+++.++........+.|...+.+. . ...+.+++.+||.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 478999999999999999999999965 456664445666888888888888888887755443 2 4566689999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 229 (490)
..+++.....+.......++.....+.+....+..+ ... ....++....++..+-....+..+....++.+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~---~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i 151 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG------GGN---NPPSIIGASVLLWCVHFLVLRGVEGAAFINTI 151 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------CCC---cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999888766554455555544444433221110 000 01111111111122233334555655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchh
Q 011265 230 SVALAVVFVVVCFFIAFIKLVEGKLDPPRMSP----DFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMN 305 (490)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~ 305 (490)
..+.-++.+++.++..... .+++......++ .......+.++..++....|+|.+.+....+.+|.||++ +.+
T Consensus 152 ~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k--~ip 228 (468)
T TIGR03810 152 TTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRS--DVG 228 (468)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcc--cch
Confidence 5432222222222111111 111110000000 011122344566788899999999999999999999854 999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCCC----chh-hhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 011265 306 HVGRLTTILCIVVYSSTAISGYLLFGKDT----ESD-VLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQT 380 (490)
Q Consensus 306 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~----~~~-il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~ 380 (490)
|++..+..++.++|.++.+..+...+.+. +++ ...-+.+. .+++...+..++..+..+.+.--......+.
T Consensus 229 ~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~----~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~ 304 (468)
T TIGR03810 229 KATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM----VGTWGAVLINIGLIISILGAWLSWTLLPAEI 304 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877665443211 111 10000000 0123444555555555555544444444444
Q ss_pred HHHhhccCCCC------ccccchhh-HHHHHHHHHHHHHHHh-hcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCC
Q 011265 381 VDALFFEGSAP------LLESRKRS-LALTVVLLVLIYFGST-MIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEG 451 (490)
Q Consensus 381 ~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~ia~-~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~ 451 (490)
....-.++.-| .+.+...+ +.....+.....++.. .-+.++.+.++.+ ....+.|+++++.++|+++++
T Consensus 305 ~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 305 PLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 33321111100 00111222 2222222221111111 1234566666644 455688999999999987654
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.65 E-value=7.6e-13 Score=135.83 Aligned_cols=240 Identities=10% Similarity=0.042 Sum_probs=149.7
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++.....++++||+|++..| .+++++|. ..+..+++.+++.......+.|.... +...++.+.+++.+||
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~ 96 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP 96 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence 566899999999999999999999988 67888886 45667777777777777777776543 4455677899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
...+++.....+.......+.....+.++....+ . . ..+.....+ +.++-.......+....++.
T Consensus 97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p------~------~--~~~~~~~~~-~~~~~~iN~~g~~~~~~i~~ 161 (469)
T PRK11049 97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP------D------L--SDWVASLAV-VLLLLSLNLATVKMFGEMEF 161 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C------C--cHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 9999999988876654444444455544432111 0 1 111111111 12222233344455555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---CCCC---C-CCCCCC-CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCC
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEG---KLDP---P-RMSPDF-GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~---~~~~---~-~~~p~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 300 (490)
+....-+..+++.++..+.....+ +... . +.+++. ..+..+.++..++....|+|.|...+....+|+|||+
T Consensus 162 ~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 241 (469)
T PRK11049 162 WFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE 241 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh
Confidence 433322222222222211111110 0000 0 001100 0012455678899999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHH
Q 011265 301 PQKMNHVGRLTTILCIVVYSSTAISGY 327 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy 327 (490)
|+.+|++..+.....++|.+......
T Consensus 242 -r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 242 -KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 88999998777778888887666544
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.65 E-value=2.7e-13 Score=137.94 Aligned_cols=362 Identities=11% Similarity=0.071 Sum_probs=202.8
Q ss_pred CCCCchHHHHHHHHHHhHhhhhchHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCc
Q 011265 72 NEGSGVAGAVFNLTTTVIGAGIMALPAA-MKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRP 149 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~ 149 (490)
+|+.|.++.+...+++++|+|++.+|.. ....|. ..++.+++.+++.......+.|..++ ++.....+..++.+||+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 80 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGEL 80 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcH
Confidence 4678999999999999999999999955 445553 34566677777777778888887644 33345556678899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-hhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVF-DQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
..++......+.....+..+....++++....+..+.. +.......++...+.+..+.+++++-....+..+....++.
T Consensus 81 ~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~ 160 (429)
T TIGR00909 81 TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVND 160 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999998888777777777777777765533211100 11000000011111111121222333334445566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHH
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVG 308 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~ 308 (490)
+...+.+..+++.++........+ +..| .. +.++.++..++....|+|.+.+......+|+|||+ |+.+|++
T Consensus 161 v~~~~~i~~l~~~~~~~~~~~~~~-----~~~~-~~-~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~-r~ip~ai 232 (429)
T TIGR00909 161 ILVVLKVAALLLFAALGAIHFASN-----NYTP-FM-PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE-RDIPKAI 232 (429)
T ss_pred HHHHHHHHHHHHhhhHHHhhCcHH-----hcCC-CC-CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc-ccccHHH
Confidence 655433333322222222111111 1111 11 12455677889999999999999999999999998 7899999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCC----CchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 011265 309 RLTTILCIVVYSSTAISGYLLFGKD----TESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDAL 384 (490)
Q Consensus 309 ~~~~~~~~~~Y~~~g~~gy~~fG~~----~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~ 384 (490)
..+..++.++|++.........+.+ .+++...-..+. .+++...+..+...+..+.+..-......+.+...
T Consensus 233 ~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 233 ILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL----GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876655332211 000100000000 11234444555555555555544444444444433
Q ss_pred hccCCCCc-------cccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCC
Q 011265 385 FFEGSAPL-------LESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEG 451 (490)
Q Consensus 385 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~ 451 (490)
-.++.-|. +.+...+.... ....+.++ ....+++.++++.+ ....+.|++.++..+++++++
T Consensus 309 a~dg~lP~~~~~~~~~~~~P~~a~~~--~~~i~~~~-~~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 309 SRDGLLPGSLSKVHPKTGTPHMSIII--FSLTAALL-ASLVPLEGLAELTS--IGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HcCCCCcHHHHHcCCCCCCcHHHHHH--HHHHHHHH-HHHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 22111110 00111111111 11111222 22345777777654 344577888877777776554
No 25
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.64 E-value=2.8e-13 Score=147.45 Aligned_cols=246 Identities=12% Similarity=0.093 Sum_probs=155.1
Q ss_pred CCCCCchHHHHHHH-HHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNL-TTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLC--KATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l-~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~--~~~~y~~l~~~~~ 146 (490)
+.++.+++..++.- +.+++|+|++.-| +...++|...+++.+++.++++..++.-+.+..... +..--..+.++.+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 45688888888888 9999999996666 888899988889999999999999999999987652 2222223458899
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhh
Q 011265 147 GRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMS 226 (490)
Q Consensus 147 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 226 (490)
|+.....+.++..+.....+..|.+.+++++..+++..+. ..........+.+. ++++ +++-+......+....+
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~--~~~~~~~~~~~iia--~i~l-~ll~~In~~Gvk~~ak~ 228 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS--KIMVDPINDIRIYG--TVTV-VVLLGISFAGMEWENKA 228 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccccCccccchHHH--HHHH-HHHHHHHHhhHHHHHHH
Confidence 9999999998888888888888888888887664321110 00001111112111 1111 22222223334444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CC----CCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHh
Q 011265 227 SAASVALAVVFVVVCFFIAFIKLVEGKL-------DP----PRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNE 295 (490)
Q Consensus 227 s~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~----~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 295 (490)
+.+.+++.++.++..++..+... .+.. .. .+..|.+.. ...+++..++++.+||.|......+..|
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~-~~~~~~g~~~~~~~~f~~n~~p~~~~--~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPA-FDKPAKGFFGLGNEIFSENFIPGIPG--PEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecC-CCCCccceeeccchhhhhccCCCCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433221221111111111000 0000 00 011121111 1123667788888899999999999999
Q ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHhH
Q 011265 296 LEGRTPQKMNHVGRLTTILCIVVYSSTAIS 325 (490)
Q Consensus 296 m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 325 (490)
+|||+ |..+|.+..+..+++++|+++.++
T Consensus 306 lKnP~-r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 306 LKDPQ-KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred ccChh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 899999999999999999999754
No 26
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.64 E-value=8.4e-14 Score=136.88 Aligned_cols=362 Identities=14% Similarity=0.139 Sum_probs=216.0
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHH-HHhC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAM-KVLG-LAVGFVLIIFMGILSEVSVELLVRFSVL--CKATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~y~~l~~~~~ 146 (490)
.+|+.+.+..+..+++.++|+|++..|... +++| ..++++++++.++++...+....|.... ....+|.-+ .++|
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi-~~af 88 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI-SEAF 88 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-HHHh
Confidence 567899999999999999999999999664 5565 7788999999999999999999998643 123333333 6678
Q ss_pred CCchhHHHHHHHHHHHHHHH-HHHHHhhccc-ccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhh
Q 011265 147 GRPAKILSEICIILNNAGVL-VVYLIIVGDV-MSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLS 224 (490)
Q Consensus 147 G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 224 (490)
|+...+.....-.+...... ..+.+.++++ ++...+ . -+.+....+.....++ ..+-+...-+.+.-.
T Consensus 89 g~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp------~-c~~p~~~~~lla~~~l---~~lt~~n~~~V~~a~ 158 (479)
T KOG1287|consen 89 GPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP------L-CDVPRVASKLLAAALL---VLLTLINSFSVKWAT 158 (479)
T ss_pred ccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC------C-CCCchHHHHHHHHHHH---HHHHHHhhhhhhHHH
Confidence 88777776666665555555 7788999998 544322 0 0111122222222111 122222222233333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccch
Q 011265 225 MSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKM 304 (490)
Q Consensus 225 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 304 (490)
+++.+..++-++.+.++++..++....++.++.++.+.-....+..++..++-...|||.++..+-.+.+|+|||+ |++
T Consensus 159 ~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~-ktL 237 (479)
T KOG1287|consen 159 RVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR-RTL 237 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc-ccc
Confidence 3333333333344444444444444444444322221111123344577889999999999999999999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcC------CccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 011265 305 NHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTN------FDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLR 378 (490)
Q Consensus 305 ~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~ 378 (490)
|+++.+++.+++++|+++-+..+.... .+.++.. +.+.... ++. ..+.++.++..+.+.--..+...
T Consensus 238 P~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G---~~~-~~ip~~ValS~~G~~n~~ifs~S 310 (479)
T KOG1287|consen 238 PRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILG---VFA-WAIPFSVALSLIGSLNSVIFSSS 310 (479)
T ss_pred hHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhcc---chH-HHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999998876554432 2222111 2211111 122 44555556655555554455554
Q ss_pred HHHHHhhccCCCCcc---ccchh-hHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCC
Q 011265 379 QTVDALFFEGSAPLL---ESRKR-SLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEG 451 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~ 451 (490)
+.+.......+-|.. .+.++ .=...+++.....++..+..|+..+++..+=.......+.+=+++++|.++.+
T Consensus 311 R~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 311 RLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 444433222211100 00111 00122333344455556667899999998877776676777777777765443
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.63 E-value=1.5e-12 Score=133.72 Aligned_cols=245 Identities=13% Similarity=0.033 Sum_probs=147.7
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
-+|+.+.++.....++.+||+|++..| .+.+.+|-...++.+++.+++.......+.|...+ ++...+...+++.+||
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~ 91 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGP 91 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCh
Confidence 456899999999999999999999999 55678885445677788888888888888887644 4456677788999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
...+++.....+.....+.......+..+.... ++ . ..+...+.. .+++-+...+..+.....+.
T Consensus 92 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~------p~---~-----~~~~~~~~~-~~~~~~in~~gvk~~~~~~~ 156 (471)
T PRK11387 92 ATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWF------PQ---V-----PVWPWCLLF-CALIFGLNVVSTRFFAEGEF 156 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------Cc---C-----cHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 999888888776655544443333333322111 10 0 111111111 11222333333444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----cCCCCCCCCCCCCCC----chhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCC
Q 011265 229 ASVALAVVFVVVCFFIAFIKLV----EGKLDPPRMSPDFGS----KKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 300 (490)
...+.-++.++..++..+.... .++.......++... +....++..++....|+|.+........+|+|||+
T Consensus 157 ~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~ 236 (471)
T PRK11387 157 WFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA 236 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh
Confidence 2221111111111111111110 000000000110100 12234567788888999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011265 301 PQKMNHVGRLTTILCIVVYSSTAISGYLLFG 331 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG 331 (490)
|+.+|++..+..++.++|++.........+
T Consensus 237 -r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 237 -KVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 889999999999999999998765444333
No 28
>PRK11021 putative transporter; Provisional
Probab=99.62 E-value=4.6e-12 Score=128.01 Aligned_cols=228 Identities=17% Similarity=0.159 Sum_probs=144.1
Q ss_pred CchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCchhH
Q 011265 75 SGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPAKI 152 (490)
Q Consensus 75 ~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~ 152 (490)
.+.++++...++++||+|++.+| .+.+.+|- ..++.+++.+++.......+.|...+ ++.......+++.+||+..+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 36889999999999999999999 55666773 56778888888888888888887644 44556666788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Q 011265 153 LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVA 232 (490)
Q Consensus 153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 232 (490)
+......+.......+......+++.... +...+ ..+.+.+. ++.++-+...+..+....++.+..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~-~~~~~~~ln~~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALF----------GWSSW--QLLLAELL-TLALLWLLNLRGASSSANLQTVIAL 146 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHc----------CCCCc--hHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98887765433222233233333332211 11111 11111111 1122223344445555554444332
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHH
Q 011265 233 LAVVFVVVCFFIAFIKLVEGKLDPPR-MSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLT 311 (490)
Q Consensus 233 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 311 (490)
+.+.+. ..... .++.+..+ .+++. ...++.++..++....|+|.+.+......+|+|||+ |+.+|++..+
T Consensus 147 ---~~~~i~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-k~iPrAi~~~ 217 (410)
T PRK11021 147 ---LIVALV-VAIWW---AGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE-RDFPRALMIG 217 (410)
T ss_pred ---HHHHHH-HHHHH---HcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc-ccccHHHHHH
Confidence 111111 11111 11111111 11111 123567788899999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHhH
Q 011265 312 TILCIVVYSSTAIS 325 (490)
Q Consensus 312 ~~~~~~~Y~~~g~~ 325 (490)
..++.++|++....
T Consensus 218 ~~~~~~lYil~~~~ 231 (410)
T PRK11021 218 LLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 29
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.62 E-value=1.7e-12 Score=134.54 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=148.3
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHH-HHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPA-AMKVLGLA-VGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 147 (490)
.+|+.+.++.+...+++++|+|++..|. +.+++|-. ..++.+++.+++....+..+.|.... ++........++.+|
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g 119 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFG 119 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhC
Confidence 4568999999999999999999999995 46667732 23456677777788888888887644 333344455678999
Q ss_pred CchhHHHHHHHHHHH-HHHHHHHHHhhcccccc-cccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhh
Q 011265 148 RPAKILSEICIILNN-AGVLVVYLIIVGDVMSG-SLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSM 225 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~-~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 225 (490)
|...++......+.. .+.+..+....++++.+ .. +.. ..+.+... .+. ..++.++-....+..+....
T Consensus 120 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~------~~~-~~~~~~~~--~i~-~~~i~~~~~ln~~Gvk~~~~ 189 (501)
T TIGR00911 120 PLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVF------PDC-EVPEWAIR--LVA-VLCVLLLTLVNCLSVKWATR 189 (501)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCC-CCchHHHH--HHH-HHHHHHHHHHHHhhhHHHHH
Confidence 998888776554322 23344444555554321 11 100 01111111 111 11112222333444555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCcc
Q 011265 226 SSAASVALAVVFVVVCFFIAFIKLVEGKLDP---PRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQ 302 (490)
Q Consensus 226 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 302 (490)
++.+..+..++.+++.++..+.....++... ...+++. ..++.++..++....|+|.|......+.+|+|||+ |
T Consensus 190 ~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~-r 266 (501)
T TIGR00911 190 VQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT--ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY-R 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC--CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch-h
Confidence 5555543333322222222222222221111 1111111 12355677888999999999999999999999998 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 011265 303 KMNHVGRLTTILCIVVYSSTAISGYLLF 330 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~f 330 (490)
+.+|++..+..++.++|++..+......
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999866544333
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=99.61 E-value=6.5e-12 Score=128.41 Aligned_cols=359 Identities=12% Similarity=0.067 Sum_probs=201.0
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSV-LCKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++..+..++++||+|++..| .+++.+|- ..++.+++.+++.+..+..+.|... .+....+.+.+++.+||
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 456899999999999999999999998 77888886 3556777788888888888888754 45567788889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+..+++.....+.............+.+++...+. . ..+....+. +.++-....+..+....+..
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~------------~--~~~~~~~~~-~~~~~~lN~~gv~~~~~~e~ 151 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE------------M--AQWIPALIA-VALVALANLAAVRLYGEIEF 151 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------------C--chHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 99999999888776666666666666554331110 0 111111111 11122222333333333222
Q ss_pred HHHH---HHH-HHHHHHHHHHHHHhhcCCCCC---CCCCCCC-CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCC
Q 011265 229 ASVA---LAV-VFVVVCFFIAFIKLVEGKLDP---PRMSPDF-GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300 (490)
Q Consensus 229 ~~~~---~~~-~~~~i~~~~~~~~~~~~~~~~---~~~~p~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 300 (490)
.... ..+ .++++.+... ......+.+. .++.++. ..+.++.++..++....|+|.+...+....+|+|||+
T Consensus 152 ~~~~~ki~~i~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~ 230 (461)
T PRK10746 152 WFAMIKVTTIIVMIVIGLGVI-FFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh
Confidence 2111 111 1111111111 1111101000 1111110 0123466788999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCC----chhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhH
Q 011265 301 PQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDT----ESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFS 376 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~----~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 376 (490)
|+.||++..+...+.++|.+.........+.+. +++...-+.+. +. .....+..+...+..+.+..-..+.
T Consensus 231 -k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~-g~---~~~~~i~~~~il~a~~s~~n~~~~~ 305 (461)
T PRK10746 231 -VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI-GI---TAAAGIINFVVLTAALSGCNSGMYS 305 (461)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh-Cc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888899886544433333211 11111111110 11 1223344444555555555444555
Q ss_pred HHHHHHHhhccCCCCc------cccchhh-HHHHHHHHHHHHHHHhhcCchhHHHHHhhhh--hhhhHHHhhhHHHHHHh
Q 011265 377 LRQTVDALFFEGSAPL------LESRKRS-LALTVVLLVLIYFGSTMIPSIWTAFKFTGAT--TAVSLGFIFPPLVALRL 447 (490)
Q Consensus 377 ~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~--~~~~~~~ilP~~~~~~~ 447 (490)
..+.+...-..+.-|. +.+..++ +..+.+.......+....|+-+.+++.+-.+ ....+.|+++++.++++
T Consensus 306 ~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~ 385 (461)
T PRK10746 306 CGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRF 385 (461)
T ss_pred HHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554432222110 0111112 2223222233333444456544444433322 33468889999999998
Q ss_pred hcCC
Q 011265 448 RKEG 451 (490)
Q Consensus 448 ~~~~ 451 (490)
||++
T Consensus 386 r~~~ 389 (461)
T PRK10746 386 RRAH 389 (461)
T ss_pred HHhc
Confidence 7754
No 31
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.61 E-value=4e-12 Score=130.16 Aligned_cols=242 Identities=14% Similarity=0.101 Sum_probs=156.4
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++..+..++++||+|++..| .+++++|- .+++.+++.+++....+..+.|...+ ++.....+.+++.+||
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~ 88 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGR 88 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 577899999999999999999999999 77888885 46778888888888888888887644 5566778889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+..+++.....+.....+.......+.++....+. ...+.+ ...++.++-.......+....++.
T Consensus 89 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~-~~~~~~~~~~~n~~gv~~~~~~~~ 153 (452)
T TIGR01773 89 WAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--------------IPLWLF-SLILTIVLTLTNLYSVKSYGEFEF 153 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------CcHHHH-HHHHHHHHHHHHHHhcchhhHHHH
Confidence 99999998888777666666666666655432110 011111 111112222223333444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CCCC---CCCCCCC-CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCcc
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEG--KLDP---PRMSPDF-GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQ 302 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~--~~~~---~~~~p~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 302 (490)
...+.-++.++..++..+...... ..+. .+..++. ..+..+.++..++....|+|.+........+|+|||+ |
T Consensus 154 ~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~-r 232 (452)
T TIGR01773 154 WFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI-K 232 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh-h
Confidence 333221111111111111111111 1010 0111100 0122445688899999999999999999999999999 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhh
Q 011265 303 KMNHVGRLTTILCIVVYSSTAISGYLL 329 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 329 (490)
+.+|++..+.....++|++........
T Consensus 233 ~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 233 SITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 999999988888888998865544433
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.60 E-value=1.7e-11 Score=125.38 Aligned_cols=357 Identities=12% Similarity=0.073 Sum_probs=196.3
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFS-VLCKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++..+..++++||+|++..| .+.+++|- ..++.+++.+++.+..+..+.|.. +.+....+...+++.+||
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 567899999999999999999999999 66777774 456677788888888888888865 445566777778899999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
...+++.....+.....+.+.....++++....++ . ..+....+. +.++-.......+....++.
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---------~-----~~~~~~~i~-~~~~~~lN~~gv~~~~~~~~ 153 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE---------I-----PTWVSAAVF-FVVINAINLTNVKVFGEMEF 153 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------C-----cHHHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 99999999998888777777777777766432110 0 111111111 11222222333344444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCC---CCCCCCCC-CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccc
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEG-KLD---PPRMSPDF-GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQK 303 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~p~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 303 (490)
+...+-+..+++.++..+.....+ +.+ ..+.++.- ..+..+.++..++....|+|.+........+|+|||+ |+
T Consensus 154 ~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~-r~ 232 (456)
T PRK10238 154 WFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE-QS 232 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh-hH
Confidence 333222221111111111111111 100 11111110 0112345666778889999999999999999999999 88
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhh--cCCC--CchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 011265 304 MNHVGRLTTILCIVVYSSTAISGYLL--FGKD--TESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQ 379 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~~gy~~--fG~~--~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~ 379 (490)
.||++..+.....+.|...-...... ..+- ..++...-+.+. +. .+...+..++..+..+.+..-..+...+
T Consensus 233 iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~-g~---~~~~~i~~~~i~~~~~s~~~~~~~~~sR 308 (456)
T PRK10238 233 IPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL-GD---TFVANALNIVVLTAALSVYNSCVYCNSR 308 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc-CC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888876653332111 1111 011111111110 00 1233344444444444444334444444
Q ss_pred HHHHhhccCCCC------ccccchhh-HHHHHHHHHHHHHHHhhcC--chhHHHHHhhhhhhhhHHHhhhHHHHHHhhcC
Q 011265 380 TVDALFFEGSAP------LLESRKRS-LALTVVLLVLIYFGSTMIP--SIWTAFKFTGATTAVSLGFIFPPLVALRLRKE 450 (490)
Q Consensus 380 ~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~ia~~~p--~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~ 450 (490)
.+...-..+.-| .+.+...+ +....++..+..++....| .++.++++.+ .+..+.|++|.+.+++.+|+
T Consensus 309 ~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 309 MLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 444332111111 00111222 2223222222222212223 3556666643 45668999999999998764
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.60 E-value=1.5e-11 Score=126.87 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=152.0
Q ss_pred CCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCHHHHHHHhcCCc
Q 011265 73 EGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCK--ATSYGEVVQYALGRP 149 (490)
Q Consensus 73 ~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~--~~~y~~l~~~~~G~~ 149 (490)
|+.+.++.....++.++|+|++..| .+.+++|-...++.+++.+++.......+.|.....+ ...|.+.+++.+||.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 5789999999999999999999988 7788888443466678888888888888889875544 346888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 229 (490)
..+++.....+.....+.......+.++....+ . ... ..+..+. ++++-+...+..+....++.+
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~-~~~~~~~--~~~~~~in~~gv~~~~~~~~~ 146 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-----------K-VNP-AVWIAIF--YVFIVIINLFGVKGYGEAEFW 146 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------C-CCH-HHHHHHH--HHHHHHHHHhcchHHHHHHHH
Confidence 999999988877766666666666665532111 0 111 1111111 112222334444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-CCC---CCC---CCCCCCc---hhhhhHHhhhhhhhhhhhhhcchHHHHHhcccC
Q 011265 230 SVALAVVFVVVCFFIAFIKLVEGK-LDP---PRM---SPDFGSK---KAILDLLVVIPIMTNAYVCHFNVQPIYNELEGR 299 (490)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~~~---~p~~~~~---~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 299 (490)
....-++.++..++..+.....+. ... ... .+.+.+. ..+.++..++....|+|.+........+|+|||
T Consensus 147 ~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP 226 (478)
T TIGR00913 147 FSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANP 226 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcCh
Confidence 332111111111111111111111 000 000 0111111 135677888999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhH
Q 011265 300 TPQKMNHVGRLTTILCIVVYSSTAIS 325 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~Y~~~g~~ 325 (490)
+ |+.+|++..+..++.++|++....
T Consensus 227 ~-r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 227 R-KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 899999999999999999997544
No 34
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.58 E-value=2e-12 Score=128.32 Aligned_cols=343 Identities=16% Similarity=0.218 Sum_probs=202.7
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHH
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKIL 153 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 153 (490)
+.|.+|..+.++++++|+|++.+|....+.+-..+.+.+++.+++.......+.+..++.+..+..|..++.+||+...+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~ 81 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRL 81 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHH
Confidence 67899999999999999999999988776544456677788888888888889998877777799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHH
Q 011265 154 SEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVAL 233 (490)
Q Consensus 154 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 233 (490)
..+....+....+.......++.++... . + +...+.. ....++..-....+.++.....+.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l-~---~tp~~~~-~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 82 LSILFILYFFLIAAYLIRIFADFIKTYL---------L-P---RTPIIVI-IILIIIVSIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------c-C---CCCHHHH-HHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 9988887777766666666666553211 0 0 1122222 22222222333445566666666555432
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhh-hhhhhhhhhcchHHHHHhcccCCccchhHHHHHHH
Q 011265 234 AVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIP-IMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTT 312 (490)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 312 (490)
.+... ..+...... ...+..+..|-.+ .++.+...+.. ...++|.+.........++|||+ |.+|+...+.
T Consensus 148 ~i~~~--~~il~~~~~--~~~~~~~l~P~~~--~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~ 219 (359)
T TIGR00912 148 FLILF--ILVLILLAP--KLGNIKNLLPVLE--NGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAI 219 (359)
T ss_pred HHHHH--HHHHHHHhc--ccccHHHccCccc--cCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHHHH
Confidence 22211 011111111 1112223334222 23444444443 77899999998888899999987 9999999999
Q ss_pred HHHHHHHHHHHhHHHhhcCCCCchh----hhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 011265 313 ILCIVVYSSTAISGYLLFGKDTESD----VLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEG 388 (490)
Q Consensus 313 ~~~~~~Y~~~g~~gy~~fG~~~~~~----il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~~~ 388 (490)
.++.++|....+.....+|.+..++ ...-...-+....-+.+-.+.-.......+...-+..+.....+.+.+..+
T Consensus 220 ~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~ 299 (359)
T TIGR00912 220 IIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKR 299 (359)
T ss_pred HHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999888888888432211 111100000000111222223333445556666666677777777765433
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhh---hhhhhhHHHhhhHHHHHHhh
Q 011265 389 SAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTG---ATTAVSLGFIFPPLVALRLR 448 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G---a~~~~~~~~ilP~~~~~~~~ 448 (490)
+.+ .+..-.. ...+.++ ..|+-..-..... ...+..+.+++|.++.+...
T Consensus 300 ~~~-------~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 300 KYS-------ILILPVL--MVIFSIS-FFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred Ccc-------hhHHHHH--HHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1111111 1223333 3454221122221 13334566789998776654
No 35
>PRK10836 lysine transporter; Provisional
Probab=99.57 E-value=7e-11 Score=122.00 Aligned_cols=247 Identities=12% Similarity=0.069 Sum_probs=144.3
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++.+...++++||+|++..| .+.+++|-...++.+++.+++....+..+.|...+ ++.......+++.+|+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~ 92 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEE 92 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcCh
Confidence 456899999999999999999999999 57888886446888889999999999999997644 5566667777889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccc-ccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhh
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDV-MSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSS 227 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 227 (490)
...+++.....+.. ..+.+.....++. +.... +. .+.+ .+...++.++..+-+.-.|.........
T Consensus 93 ~~gf~~Gw~~~~~~-~~~~a~~~~a~~~~~~~~~------~~---~~~~---~~~~~~~~~~~~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 93 GFGFALGWNYWYNW-AVTIAVDLVAAQLVMSWWF------PD---TPGW---IWSALFLGVIFLLNYISVRGFGEAEYWF 159 (489)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcC------CC---CchH---HHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 88888887766543 3233222222222 21110 10 0101 1111111111111122222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCC--CCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccch
Q 011265 228 AASVALAVVFVVVCFFIAFIKLVEGKL-DPPRMSP--DFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKM 304 (490)
Q Consensus 228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p--~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 304 (490)
.+..+..++.+++...........++. .....+. .......+..+..+.....|+|.+...+....+|+|||+ |+.
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~i 238 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPA-KNI 238 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH-HHH
Confidence 222211111111111111111111110 0011111 000112344555556667799999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011265 305 NHVGRLTTILCIVVYSSTAISGYLLFG 331 (490)
Q Consensus 305 ~~~~~~~~~~~~~~Y~~~g~~gy~~fG 331 (490)
+|++..+...+.++|.+.........+
T Consensus 239 PrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 239 PRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765444433
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.56 E-value=6.3e-11 Score=121.39 Aligned_cols=239 Identities=14% Similarity=0.089 Sum_probs=147.6
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
.+|+.+.++.+...+++++|+|++.+| .+.+.+|- ..++.+++.+++.......+.|...+ +......+.+++.+||
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~ 85 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP 85 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence 456799999999999999999999999 55777785 35777888888888888888887744 4456666778999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
...+++.+...+.....+.......+.++....+ +. ..+...+.. ++++-....+..+....++.
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~----~~~~~~~~~-~~l~~~ln~~gv~~~~~~~~ 150 (457)
T PRK10580 86 LAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP----------TV----PHWIWVLSV-VLIICAVNLMSVKVFGELEF 150 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CC----ChHHHHHHH-HHHHHHHHHccchhHHHHHH
Confidence 9999999888766555455444444544432111 00 011111111 12222333334444444443
Q ss_pred HHHHHHHHHHHHH--HH--HHHHHhhcCCCC--CCCCCCC-CCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCc
Q 011265 229 ASVALAVVFVVVC--FF--IAFIKLVEGKLD--PPRMSPD-FGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTP 301 (490)
Q Consensus 229 ~~~~~~~~~~~i~--~~--~~~~~~~~~~~~--~~~~~p~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 301 (490)
+....-+..+++. .. .......+.+.+ ....+++ ...+..+.++..++....|+|.+........+|+|||+
T Consensus 151 ~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~- 229 (457)
T PRK10580 151 WFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE- 229 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-
Confidence 3222111111111 11 111111111100 0011110 00112355677888999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHH
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISG 326 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~g 326 (490)
|+.+|++..+.....++|.......
T Consensus 230 k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 230 KSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999988888888888775543
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.55 E-value=2.3e-11 Score=124.22 Aligned_cols=233 Identities=10% Similarity=-0.016 Sum_probs=147.9
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSV-LCKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~ 149 (490)
.+|+.|.++.+...++.++|......+.+++++|+..-++.+++.+++....+..+.|... .++.......+++.+||.
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 4568999999999999999854456678889999865555566666666676777888664 444556666789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 229 (490)
..+++.....+........+....++++....+.. . . +...... +.++-....+..+....++.+
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---------~----~-~~~~~~~-~~~~~~ln~~g~~~~~~i~~~ 149 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---------P----G-WLAALVF-YIVFIGINILGVGEAAKLEFV 149 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------c----h-hHHHHHH-HHHHHHHHHHHHHHHHhHHHH
Confidence 99999998888777777777888887765432210 0 1 1111111 122223334444555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC----CC--CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccc
Q 011265 230 SVALAVVFVVVCFFIAFIKLVEGKLDPPRMSP----DF--GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQK 303 (490)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p----~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 303 (490)
..+..++.+++.++ .... +.+..+..+ +. ..+..+.+++.++....|+|.+........+|+|||+ |+
T Consensus 150 ~~~~~~~~l~i~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-r~ 223 (442)
T TIGR00908 150 VTAVAIIALGVFIG---AMVP--HFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK-RD 223 (442)
T ss_pred HHHHHHHHHHHHHH---HHhc--cCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cc
Confidence 33222211111111 1111 111101000 00 0112345677888888999999999999999999998 78
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 011265 304 MNHVGRLTTILCIVVYSSTAI 324 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~ 324 (490)
.+|++..+..++.++|...-.
T Consensus 224 iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 224 IPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887644
No 38
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.55 E-value=1.4e-11 Score=128.39 Aligned_cols=367 Identities=14% Similarity=0.087 Sum_probs=200.9
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAM--KVLGLAVGFVLIIFMGILSEVSVELLVRFSVLC-KATSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~-~~~~y~~l~~~~~G 147 (490)
.+|+.+.++.+...++.++|+|++.+|... ..+|-. .++.+++.++.+...+..+.|...+. +..+....+++.+|
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 467899999999999999999999999543 346743 45566777778888888888876442 22233333567899
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cc-cchhh--ccCcccchhHHHHHHHHHHHHhccccccchhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHH-TG-VFDQW--LGKGMWDHRKLLILIVLVVFLAPLCALDRIESL 223 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 223 (490)
+...+++.....+.....+.+.....++++..+..+ .+ ..... ...+........+ .+..++++-....+..+..
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~-a~~ii~l~~~ln~~Gik~s 183 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFF-AVCLILLLAVLLSFGVKES 183 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHH-HHHHHHHHHHHHHhchhHH
Confidence 999999998888776655555555555554432211 00 00000 0000000001111 1111122223444556666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--CCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCc
Q 011265 224 SMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPR--MSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTP 301 (490)
Q Consensus 224 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 301 (490)
++++.+..+..+..+++.++........++..... ..++.. +.++.+++.+.....|+|.|...+....+|+|||+
T Consensus 184 ~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~- 261 (557)
T TIGR00906 184 AWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ- 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc-
Confidence 66666655433333322222222211111111000 000111 12355778889999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcCCC---CchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFGKD---TESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLR 378 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~---~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~ 378 (490)
|+.+|++..+..++.++|.++.+.-....+.+ .++++...+.. .+. ++...++.+...+.++.+.....+...
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~-~g~---~~~~~ii~~~~~~~~~~sl~~~~~~~s 337 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEY-VGW---GPAKYIVAVGALCGMSTSLLGGMFPLP 337 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHH-cCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999876543332211 11111111111 111 234444445555555555444445555
Q ss_pred HHHHHhhccCCCCc-------cccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcC
Q 011265 379 QTVDALFFEGSAPL-------LESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKE 450 (490)
Q Consensus 379 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~ 450 (490)
+.+...-..+.-+. +.+...+. .....+.+.+++. +.+++.+.++.. .+..+.|.++++..+.+|++
T Consensus 338 Ril~amarDGlLP~~fakv~~r~~tP~~A--il~~~iv~~il~~-~~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 338 RVIYAMARDGLLFKWLAQINSKTKTPINA--TVVSGAIAALMAF-LFDLKALVDLLS--IGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHHHHHHcCCCccHHHhccCCCCCCcHHH--HHHHHHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Confidence 55444322111110 01111111 1112222233333 335677777754 55578899998888887754
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.54 E-value=3.2e-11 Score=123.21 Aligned_cols=239 Identities=14% Similarity=0.144 Sum_probs=142.2
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHH-HHHhC-HHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAA-MKVLG-LAVGFVLIIFMGILSEVSVELLVRFSVL----CKATSYGEVVQY 144 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~~~y~~l~~~ 144 (490)
-+|+.|.++.+...++.++|+|++..|.. ....| ....++.+++.+++....+..+.|.... .+...| .++
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~ 82 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKN 82 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHH
Confidence 45689999999999999999999999965 44556 3335566777777778888888887543 234455 467
Q ss_pred hcCCchhHHHHHHHHH-HHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhh
Q 011265 145 ALGRPAKILSEICIIL-NNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESL 223 (490)
Q Consensus 145 ~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l 223 (490)
.+||...++....... ..-.....+....++++.... +.... ... ......+..+-....+..+..
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~----------~~~~~-~~~--~~~~~~~~~~~~ln~~gv~~~ 149 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT----------PIDPL-LGK--FIAAGLIIAFMLLHLRSVEGG 149 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCchH-HHH--HHHHHHHHHHHHHHHhhhhHH
Confidence 8999888888776443 222233344555555543211 00101 011 111111122223334444544
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccc
Q 011265 224 SMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQK 303 (490)
Q Consensus 224 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 303 (490)
..++.+..++.++.+++.++........++...+...+ ......+.++..++....|+|.+........+|+|||+ |+
T Consensus 150 ~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~ 227 (445)
T PRK11357 150 AAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG-KT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc-cc
Confidence 44444444322222211111111111111111111111 11112255677888999999999999999999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHH
Q 011265 304 MNHVGRLTTILCIVVYSSTAISGY 327 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~~gy 327 (490)
.+|++..+..++.++|.+......
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998766443
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.52 E-value=8.6e-11 Score=119.83 Aligned_cols=339 Identities=14% Similarity=0.112 Sum_probs=189.1
Q ss_pred HHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCchhHHHHHHHHHH
Q 011265 84 LTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPAKILSEICIILN 161 (490)
Q Consensus 84 l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~ 161 (490)
.++++||+|++..| .+++++|- ..++.+++.+++....+..+.|...+ ++.....+.+++.+||...+++.....+.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 35789999999999 58889996 47888889999999999999997644 55667788889999999999999888776
Q ss_pred HHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHH
Q 011265 162 NAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVC 241 (490)
Q Consensus 162 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~ 241 (490)
............+..+... .+ . .....+ ...++..+-+......+....++.+..+.-++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~----------~~-~---~~~~~~-~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ 146 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSW----------VP-G---IPIWLF-SLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAF 146 (446)
T ss_pred HHHHHHHHHHHHHHHHHhc----------cc-c---CcHHHH-HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Confidence 5554444444333332211 00 0 111111 1111122222233334444444433332222222121
Q ss_pred HHHHHHHhhcCCC---CCCC---CCC-CCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHHHH
Q 011265 242 FFIAFIKLVEGKL---DPPR---MSP-DFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTIL 314 (490)
Q Consensus 242 ~~~~~~~~~~~~~---~~~~---~~p-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~ 314 (490)
++..+.. ..+.. +... .++ +...+..+.++..++....|+|.+.+.+....+|+|||+ |+.+|++..+...
T Consensus 147 ii~~~~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~-r~iPrai~~~~~~ 224 (446)
T PRK10197 147 IFLGAVA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE-KHIVRATNSVIWR 224 (446)
T ss_pred HHHHHHH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hhHHHHHHHHHHH
Confidence 1111111 11111 0000 011 000123456788999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHHhHHHhhcCCCC-c----h---hhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 011265 315 CIVVYSSTAISGYLLFGKDT-E----S---DVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFF 386 (490)
Q Consensus 315 ~~~~Y~~~g~~gy~~fG~~~-~----~---~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~ 386 (490)
+.++|++..+........+. + + ...+.... .+...+......+..+.+..-..+...+.+...-.
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-------~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ar 297 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-------PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSR 297 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999987665333322111 1 0 11111111 12334444555555555555555555555554432
Q ss_pred cCCCCc------cccchhh-HHHHHHHHHHHHHHHhhcC--chhHHHHHhhhhhhhhHHHhhhHHHHHHhhc
Q 011265 387 EGSAPL------LESRKRS-LALTVVLLVLIYFGSTMIP--SIWTAFKFTGATTAVSLGFIFPPLVALRLRK 449 (490)
Q Consensus 387 ~~~~~~------~~~~~~~-~~~~~~~~~~~~~ia~~~p--~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~ 449 (490)
++.-+. +.+...+ +....++.....+.....| .++.++++.+. ...+.|+++++.++++||
T Consensus 298 dg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~--~~li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 298 RGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGA--IALLVYLVIAVSQLRMRK 367 (446)
T ss_pred CCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 211110 0111222 2222222222222222222 36677777663 334888999988888876
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.51 E-value=1.9e-11 Score=124.38 Aligned_cols=356 Identities=16% Similarity=0.175 Sum_probs=205.2
Q ss_pred CchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHhh-hcCCCCHHHHHHHhcCCchhH
Q 011265 75 SGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILS-EVSVELLVRFSV-LCKATSYGEVVQYALGRPAKI 152 (490)
Q Consensus 75 ~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~-~~~~~~y~~l~~~~~G~~~~~ 152 (490)
.|+++++...++.++|+|++..| ...+.|.. .++..++.+.+. ......+.|..+ .++.......+++.+||+..+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~ 78 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGF 78 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchh
Confidence 37889999999999999999999 77777754 555555555555 567777777654 566777778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Q 011265 153 LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVA 232 (490)
Q Consensus 153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~ 232 (490)
+......+........+.....+++...++. ...++.+ ....+.+. .+..+-....+..|..++++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~i~~~-~~~~~~~l~~~g~~~~~~~~~~~~~ 149 (426)
T PF13520_consen 79 IVGWLYWVAYILSLASVASSFASYLLSLFGP------DLNPSPW--PQFLIAII-LILLFTLLNLLGIKLSGKIQNILTV 149 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG------GGTCSHH--HHHHHHHH-HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccceeEEEeeccccccccchhhhhhhcccc------ccccccc--hheeeeec-ccccceEeeechhhhhhhhhhhhhh
Confidence 9999998888888888888888887653321 1111111 12222222 2223333444445666666655554
Q ss_pred HHH-HHHHHHHHHHHHHhhcCCCC-----CCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhH
Q 011265 233 LAV-VFVVVCFFIAFIKLVEGKLD-----PPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNH 306 (490)
Q Consensus 233 ~~~-~~~~i~~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 306 (490)
+.+ ..+++.++..+.....+... .....|+ .+...+.++....|+|.+......+.+|+|| |+.+|
T Consensus 150 ~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ 221 (426)
T PF13520_consen 150 IKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS-----GWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPR 221 (426)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS-----SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHH
T ss_pred hhhhhhhhhheeEEEeeecccccccccccccccCCc-----cccchhhHHHHHHhhcccccccccccccccc---hhhee
Confidence 444 22222222222222111111 0112221 2234678899999999999999999999876 59999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCCCc---hhh---hcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 011265 307 VGRLTTILCIVVYSSTAISGYLLFGKDTE---SDV---LTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQT 380 (490)
Q Consensus 307 ~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~---~~i---l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~ 380 (490)
++..+..++.++|.+.........+++.. ++. ...+.+..+ +.+...+..++..+..+.+.........+.
T Consensus 222 ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 222 AIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG---GSWLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc---ccccccccccccccccccccchhhcchhhc
Confidence 99999999999999998776666553211 110 001101000 023445555556666666666666666555
Q ss_pred HHHhhccCCCCc----c--ccchhhHHHHHHHHHHHHHHH---hhcC--chhHHHHHhhhhhhhhHHHhhhHHHHHHhhc
Q 011265 381 VDALFFEGSAPL----L--ESRKRSLALTVVLLVLIYFGS---TMIP--SIWTAFKFTGATTAVSLGFIFPPLVALRLRK 449 (490)
Q Consensus 381 ~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~ia---~~~p--~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~ 449 (490)
+.....++.-+. . .+...... ......+.++. ...| ++..+.++.. ....+.|+++.+.++++++
T Consensus 299 l~~~a~d~~lP~~~~~~~k~~~P~~a~--~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 374 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVNKFGTPYNAI--ILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLRR 374 (426)
T ss_dssp HHHHHHTTSSSGGGGTTSSSSSCHHHH--HHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTHH
T ss_pred ccccccccchhhhhhhccccCCceeee--hhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 555433222110 0 11111111 11222222222 2233 4555666533 4445778888888888776
Q ss_pred CCCCCCh
Q 011265 450 EGPGLSL 456 (490)
Q Consensus 450 ~~~~~~~ 456 (490)
+++..+|
T Consensus 375 ~~~~~~r 381 (426)
T PF13520_consen 375 KRPDLKR 381 (426)
T ss_dssp HSCSSGH
T ss_pred hcCCcCC
Confidence 6544433
No 42
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.51 E-value=1.2e-11 Score=119.96 Aligned_cols=354 Identities=16% Similarity=0.165 Sum_probs=222.2
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVL-IIFMGILSEVSVELLVRFS-VLCKATSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~-l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G 147 (490)
-+|+.+..+--+.-+...||+|. ++--.+.+.+| |++++ -.+.+++.+.-++.+.|.. +++...|+.+.+++.+|
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG 88 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLG 88 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhc
Confidence 45688899999999999999997 56668899999 45444 4566777777888888865 45678999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHH--HHHHHHhccccccchhhhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILI--VLVVFLAPLCALDRIESLSM 225 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~pl~~~~~l~~l~~ 225 (490)
+++.+++.....+.....+++-+..++.+++..++. ...|.... +..+..+-+...|.+.++.+
T Consensus 89 ~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~--------------vP~Wv~al~~~~l~~~~NL~sVk~FGE~Ef 154 (462)
T COG1113 89 PWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD--------------VPQWVFALAAVVLLLAVNLISVKVFGELEF 154 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888653221 12222222 22223333566676777664
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-----CchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccC
Q 011265 226 S-SAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFG-----SKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGR 299 (490)
Q Consensus 226 ~-s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 299 (490)
. +.+-+...+.++++.++..+ ..+.++.. ....+..+ -++.+.+++.++-..+|||.+.+.+=.-..|-|||
T Consensus 155 WfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~-~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP 232 (462)
T COG1113 155 WFALIKVAAIIAFIVVGIVLLF-GGFGGGGG-AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDP 232 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccCCCCC-CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcCh
Confidence 4 44443333333333322222 22222211 11111111 12467789999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHH-----HhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhh
Q 011265 300 TPQKMNHVGRLTTILCIVVYSST-----AISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVH 374 (490)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~Y~~~-----g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 374 (490)
+ |..+|+...-..-..++|..- .+..+-.++++.+ +...-|..- |.+ ....+.++......+.+.--..
T Consensus 233 ~-k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S-PFV~~f~~i-Gi~---~Aa~i~N~VVLtAa~S~~NSgl 306 (462)
T COG1113 233 E-KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS-PFVTVFSLI-GIP---FAAGIMNFVVLTAALSALNSGL 306 (462)
T ss_pred h-hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC-cHHHHHHHc-CCc---ccccceeEEEeechhhcccccc
Confidence 9 778888887777666666543 3333333444322 232222221 111 1222333334444555555556
Q ss_pred hHHHHHHHHhhccCCCCccc-------cchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhh--hhhHHHhhhHHHHH
Q 011265 375 FSLRQTVDALFFEGSAPLLE-------SRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATT--AVSLGFIFPPLVAL 445 (490)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~--~~~~~~ilP~~~~~ 445 (490)
+...+.+..+...++.|... -..+-+..+.+...++.++....| +.++.++-+.. +....+.+=.+.++
T Consensus 307 ystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l 384 (462)
T COG1113 307 YSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQL 384 (462)
T ss_pred cccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777664433332111 123346678888888999999999 44444433333 33344556667788
Q ss_pred HhhcC
Q 011265 446 RLRKE 450 (490)
Q Consensus 446 ~~~~~ 450 (490)
|+||.
T Consensus 385 ~~rk~ 389 (462)
T COG1113 385 KLRKA 389 (462)
T ss_pred HHHhc
Confidence 88773
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.44 E-value=7.4e-10 Score=114.13 Aligned_cols=250 Identities=15% Similarity=0.174 Sum_probs=161.1
Q ss_pred CCCCCchHH-HHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAG-AVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~-~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~ 148 (490)
.+++.+.++ .....++.++|.|++.+|......+ ....+.+++.+++....+..+.|..++ ++..-+.+.+++.+||
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 88 (466)
T COG0531 10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGP 88 (466)
T ss_pred cCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCc
Confidence 455777777 8888999999999999998887765 223333556666666666777776543 3344455567899999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+..+++.....+.............+..+....+..+ ......+ .........+.++-+...+..+.....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 89 RLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LLSIGPL---LIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hhcCCch---HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8889999888888887777777777776554333211 0000001 11111222223333444555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHH
Q 011265 229 ASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFG-SKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHV 307 (490)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 307 (490)
+..+..++..++..+.......... ....+... ....+..+..++....++|.|........+|+|||+ |+.+|+
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~-r~ip~a 237 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSN---GNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK-RTIPRA 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc---cccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc-ccccHH
Confidence 6655444444333333332222211 11111111 223344677889999999999999999999999997 689999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCC
Q 011265 308 GRLTTILCIVVYSSTAISGYLLFGK 332 (490)
Q Consensus 308 ~~~~~~~~~~~Y~~~g~~gy~~fG~ 332 (490)
+..+.+++.++|++.........++
T Consensus 238 ii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 238 IILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999999998887776664
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.35 E-value=1.4e-08 Score=104.53 Aligned_cols=255 Identities=10% Similarity=-0.050 Sum_probs=141.8
Q ss_pred CCCCCchHHHHHHHHHHh-HhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTV-IGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~-iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G 147 (490)
-+|+.|.++.+..-++.+ +|+|+.++| .+..++|- ..+..+++.++.....+..+.|...+ +.......-+++.+|
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g 89 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGG 89 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcC
Confidence 456789999999888875 899999988 66777775 34566677777777777788886544 444445556788999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc---hhhccCcccchhHHHHHHHHHHHHhccccccchhhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVF---DQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLS 224 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~ 224 (490)
|...+++.....+................+..+.+..... +++..+.. ..+.+.+.+. ++.+.-+...+..|...
T Consensus 90 ~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~in~~g~k~~~ 167 (475)
T TIGR03428 90 EVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSG-AANAVLLGSV-LLVLTTVINCIGVEWMS 167 (475)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCc-hHHHHHHHHH-HHHHHHHHHHhhhhHHH
Confidence 9999998888776654433333333333221110000000 00000000 0011212111 11222223334455555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCcc
Q 011265 225 MSSAASVALAVVFVVVCFFIAFIKLVEGKLDP--PRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQ 302 (490)
Q Consensus 225 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 302 (490)
.++.+..+..+..+++.++...... +.+... ....... .......+..+.....|+|.+......+.+|+|||+ |
T Consensus 168 ~i~~~~~~~~i~~l~~iii~~~~~~-~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~-r 244 (475)
T TIGR03428 168 RVNTIGVTCEIVGVLAVIGVLFTHA-QRGPGVVFDTSVTGA-SPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR-R 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceeeecCCCCC-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc-h
Confidence 5555544332222222222111111 111000 0011001 111123444566677899999999999999999999 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011265 303 KMNHVGRLTTILCIVVYSSTAISGYLLFG 331 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG 331 (490)
+.||++..+..++.++|.+.-+......+
T Consensus 245 ~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 245 VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999888777665554444333
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.33 E-value=2.4e-08 Score=103.40 Aligned_cols=242 Identities=14% Similarity=0.171 Sum_probs=131.4
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcC--CCCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILS-EVSVELLVRFSVLCK--ATSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~--~~~y~~l~~~~~G 147 (490)
.+|+.|.++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ......+.|.....+ ...-..-.++.+|
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G 81 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVG 81 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcC
Confidence 3568999999999999999976 679889988853 444444455443 335556777654432 2445556688999
Q ss_pred CchhHHHHHHHHHHHHHH---HHH-------HHHhhcccccccccccccchhhccCcccchh-HHHHHHHHHHHHhcccc
Q 011265 148 RPAKILSEICIILNNAGV---LVV-------YLIIVGDVMSGSLHHTGVFDQWLGKGMWDHR-KLLILIVLVVFLAPLCA 216 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~---~~~-------y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~ 216 (490)
++..++............ ..+ +.. .+.+..+..+. .+ .+.. ...+..+..+.++-...
T Consensus 82 ~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~---~~~~~~~~~~a~~~~~~~t~vn 150 (496)
T PRK15238 82 PKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTTQTWHF-------LG---LNSTQVVGILAVIWMILVTFVA 150 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchhhhhhh-------hc---ccchHHHHHHHHHHHHHHHHHH
Confidence 988877654432222111 111 111 12211110000 00 0111 11111221112233445
Q ss_pred ccchhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhcC-CCCCCC----CCCCCC-CchhhhhHHhhhhhhhhhhhhhcch
Q 011265 217 LDRIESLSMSSAASVALAVVFVV-VCFFIAFIKLVEG-KLDPPR----MSPDFG-SKKAILDLLVVIPIMTNAYVCHFNV 289 (490)
Q Consensus 217 ~~~l~~l~~~s~~~~~~~~~~~~-i~~~~~~~~~~~~-~~~~~~----~~p~~~-~~~~~~~~~~~~~~~~faf~~~~~~ 289 (490)
.+.++..+.++.++.+..+...+ ..++........+ +.+.+. ..+... ...+..++..++....|+|.+....
T Consensus 151 ~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 230 (496)
T PRK15238 151 SKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAV 230 (496)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHH
Confidence 66677777766654432221111 1111111111111 111110 000000 0011134667778889999999999
Q ss_pred HHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhHHH
Q 011265 290 QPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGY 327 (490)
Q Consensus 290 ~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 327 (490)
....+|+|||+ |+.+|++..+...+.++|.+..++..
T Consensus 231 ~~~a~E~~~p~-~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 231 GGLVDKTENPE-KNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHHHhccCCC-ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999998755443
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.32 E-value=4.1e-09 Score=104.69 Aligned_cols=359 Identities=14% Similarity=0.109 Sum_probs=234.1
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCK-ATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~-~~~y~~l~~~~~G~ 148 (490)
-+|+....+..+.-+...||+|. ++.-.+++++|-...++...+++.+.++.+.-+.|.....+ ..+|...+.+..++
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdp 121 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDP 121 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCc
Confidence 45678888899999999999998 56779999999888888889999999999999999876544 55599999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhh-hh
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSM-SS 227 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~-~s 227 (490)
-..+.+.....+....++..-++..+..++...+ +. .+.-.|..++..+++++-+.-.|...+.-+ .|
T Consensus 122 a~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p----------~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 122 AFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP----------DT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC----------CC-CChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 9999999999988888888888888876644211 11 112233333444444444666776666654 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCC--CCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccch
Q 011265 228 AASVALAVVFVVVCFFIAFIKLVEGKLD-PPRMS--PDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKM 304 (490)
Q Consensus 228 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~--p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 304 (490)
.+-++..+.++++.++... ....++.+ ..+.+ |..- ...+.++...+-+..|+|.+...+---..|-+||+ |..
T Consensus 191 ~iKV~~ii~Fii~gii~~~-Gg~~~~~~ig~~yw~~pg~F-~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~-K~i 267 (541)
T COG0833 191 SIKVLTIIGFIILGIIIIC-GGGPTHGYIGFNYWHDPGAF-AGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR-KSI 267 (541)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCCcceeeecCCCCC-CcchHHHHHHHhhheeeeeceeeeeeeecccCCch-hhh
Confidence 4444433333333332221 22111111 01111 2111 23477888999999999999999999999999999 889
Q ss_pred hHHHHHHHHHHHHHHHHHHhH-HHhh-cCC----------CCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhh
Q 011265 305 NHVGRLTTILCIVVYSSTAIS-GYLL-FGK----------DTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPV 372 (490)
Q Consensus 305 ~~~~~~~~~~~~~~Y~~~g~~-gy~~-fG~----------~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 372 (490)
||++.-.+.-..++|++.-++ |.+. +.| ...++....+.+. |. ..+..+.+..+.+.++.+---
T Consensus 268 PkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~-Gi---~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 268 PKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNA-GI---PVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhc-CC---ccchHHHHHHHHHHHHHHhhc
Confidence 999999988888888775433 2221 222 1222333333332 12 245667777788888888878
Q ss_pred hhhHHHHHHHHhhccCCCCcc-------ccchhhHHHHHHHHHHHHHHHhhcC--chhHHHHHhhhhhhhhHHHhhhHHH
Q 011265 373 VHFSLRQTVDALFFEGSAPLL-------ESRKRSLALTVVLLVLIYFGSTMIP--SIWTAFKFTGATTAVSLGFIFPPLV 443 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~i~~l~Ga~~~~~~~~ilP~~~ 443 (490)
..+...+.+..+...+..|.- .....-++++.++-.++++-+..-. -+.-++++.|. +..++.+-=++.
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~--s~~i~W~~I~~s 421 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGL--SGFIAWGSICLS 421 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 888888888887655554421 1122234556666666666555522 25667777663 334555556666
Q ss_pred HHHhhc
Q 011265 444 ALRLRK 449 (490)
Q Consensus 444 ~~~~~~ 449 (490)
|++.||
T Consensus 422 hirFR~ 427 (541)
T COG0833 422 HIRFRR 427 (541)
T ss_pred HHHHHH
Confidence 666553
No 47
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.29 E-value=2.7e-09 Score=104.06 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=189.4
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHH
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKIL 153 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 153 (490)
+.|..|.+..+...++|+|++.+|....+.+ -.|.+..++.+.......+++.+..++.+.++..|..++.+||+...+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 4688999999999999999999998876554 245556667777777777888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHH
Q 011265 154 SEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVAL 233 (490)
Q Consensus 154 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~ 233 (490)
+.+...++.+..........+|.++... . -+...+.+ ....+++.-....+.++.+...+.+-...
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~---------l----p~TP~~~i-~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYL---------L----PETPIWVI-ILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------c----CcCCHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999888888888887765411 0 01122333 22223344445556666666544444322
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHHH
Q 011265 234 AVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTI 313 (490)
Q Consensus 234 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~ 313 (490)
.+...+... ....++.+..+..|-.+ .++.+...+.....+.|.+.....-+...+|+|+ |.+|....+..
T Consensus 146 ~~i~~~~i~-----~~~~~~~~~~~l~P~~~--~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~k~~~~~~~ 216 (320)
T PF03845_consen 146 FLILLLLIL-----LLSIPNIDWDNLLPVLE--SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK--KLKKSLLIAIL 216 (320)
T ss_pred HHHHHHHHH-----HHhcccCCHHHeeCccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--HHHHHHHHHHH
Confidence 222111111 11122334444455322 3556777888888889999888888999999988 89999999999
Q ss_pred HHHHHHHHHHhHHHhhcCCCCchhhhcCCccc---cCcc---cchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 011265 314 LCIVVYSSTAISGYLLFGKDTESDVLTNFDKD---LGIG---YSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFF 386 (490)
Q Consensus 314 ~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~---~~~~---~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~ 386 (490)
++.++|...-+.....||.+..++ ..+|.. +..+ .-+.+-.+.-.......+...-+..+...+.+.+.+.
T Consensus 217 ~~~~~~~~~~~~~i~vfG~~~~~~--~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 217 ISGLFLLFIIFITIGVFGPELAKK--LTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhc--eecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999998888888888432111 111110 0000 0012222233334455566666777777777777654
No 48
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.25 E-value=9.1e-11 Score=100.39 Aligned_cols=220 Identities=14% Similarity=0.191 Sum_probs=145.4
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------h--c----
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSV--------------L--C---- 133 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~--------------~--~---- 133 (490)
..|..-....+.|-++|+|-|++|.||+.+||.+++.++.+.+.+++.+....+|... + .
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 4466667788999999999999999999999999999999999999999999888531 0 0
Q ss_pred -------------------------------------CCCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011265 134 -------------------------------------KATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDV 176 (490)
Q Consensus 134 -------------------------------------~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~ 176 (490)
+....+|++.+.|.|.+-.+..+++++++||-...|...+--.
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 0123478999999999999999999999999999998877766
Q ss_pred ccccccc------cccch--hhcc-Ccccc-------hhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHH
Q 011265 177 MSGSLHH------TGVFD--QWLG-KGMWD-------HRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVV 240 (490)
Q Consensus 177 l~~~~~~------~~~~~--~~~~-~~~~~-------~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i 240 (490)
..++... .++.. ..-+ ...|. ..++.+.+...++.+|+.+.. +...+.++++..+....-...
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~d-iqktk~iqiltslmrw~~~~~ 249 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFAD-IQKTKHIQILTSLMRWAAFIL 249 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEec-cccchhHHHHHHHHHHHhccc
Confidence 6652221 11100 0000 11121 123444455556677877654 666677777666544333322
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCC
Q 011265 241 CFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300 (490)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 300 (490)
.+...-.+...+. .+. +| +...+-++-+.++...|+|.+|++.|.....++-+.
T Consensus 250 g~~l~tmqaeeda--a~a-~p---~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 250 GISLATMQAEEDA--AAA-HP---PARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhhcccc--ccc-CC---ccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 2222211221111 111 22 222344555778999999999999999888776544
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.23 E-value=2.8e-08 Score=102.69 Aligned_cols=247 Identities=10% Similarity=-0.049 Sum_probs=128.8
Q ss_pred CCCCCchHHHHHHHHHHhHh--hhhchH-HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNLTTTVIG--AGIMAL-PAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG--~GiL~l-P~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~ 146 (490)
-+|+.+.++.+..-++. +| .|+... +.++.++|-...++.+++.+++....+..+.|...+ ++......-+++.+
T Consensus 10 l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 10 LKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 44578888887777774 44 566443 467777886545667788888888888888887644 44445555566676
Q ss_pred C----CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhh
Q 011265 147 G----RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIES 222 (490)
Q Consensus 147 G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~ 222 (490)
| +...+++.....+.....+.+.....++++........-.+.+. ++.|.. ......++.++-+......|.
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI-PTRWHI---FGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-ccCchh---hhhHHHHHHHHHHHHHhhHhH
Confidence 6 45566666666665555555444444444432110000000011 111111 111111112222333333444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCCCCCC-chhhhhHHhhhhhhhhhhhhhcchHHHHHhc
Q 011265 223 LSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPP-----RMSPDFGS-KKAILDLLVVIPIMTNAYVCHFNVQPIYNEL 296 (490)
Q Consensus 223 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~p~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 296 (490)
+..++.+..+..++..++.++...... .++.+.. +..++... ......+..++....|+|.+........+|+
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~ 243 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACK-SPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC-CCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc
Confidence 444444433222222221111111111 1111100 01111100 0111234455666789999999999999999
Q ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHh
Q 011265 297 EGRTPQKMNHVGRLTTILCIVVYSSTAI 324 (490)
Q Consensus 297 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 324 (490)
|||+ |+.+|++..+..++.+++.+..+
T Consensus 244 knP~-r~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 244 ENPE-VVGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred CChh-hhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999 89999999998877765544433
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.23 E-value=6.8e-10 Score=113.77 Aligned_cols=371 Identities=13% Similarity=0.073 Sum_probs=227.4
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCHHHHHHHhcC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALP-AAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKA--TSYGEVVQYALG 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~--~~y~~l~~~~~G 147 (490)
-+|..+.+...+.-+.++||+|++-.- .+.++.|-..-++..++.+...+.++.-+.|...+.+. .++...+++..|
T Consensus 28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVG 107 (554)
T ss_pred hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeC
Confidence 466788888888999999999996555 88888887666777778888888999999998766543 566677889999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSL--HHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSM 225 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 225 (490)
+...+.+..-..+.....+.+-+...+.+++... ...+. ..+..+...++..+..+++++.+...+-....++
T Consensus 108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~-----~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGI-----LVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccc-----cccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999988888888888888776532 00000 0000111112222333334444444454445554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCCC--CCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCC
Q 011265 226 SSAASVALAVVFVVVCFFIAFIKLVEGK---LDPPRMS--PDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300 (490)
Q Consensus 226 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~--p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 300 (490)
......+++++-+++..+........++ ....+.+ |..-.+..+.++++++.+..|+|.+...+-...+|-|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 4444443332222222221111122111 1111111 1111222377888999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHHhh--cCCC-Cchhh--hcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhh
Q 011265 301 PQKMNHVGRLTTILCIVVYSSTAISGYLL--FGKD-TESDV--LTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHF 375 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~--fG~~-~~~~i--l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 375 (490)
|..|+++..++..+.++|.+..+.-=+. |.+. ..++. ..-|.-..+.+....+..++++...+.++.+.--..+
T Consensus 263 -k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y 341 (554)
T KOG1286|consen 263 -KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLY 341 (554)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhH
Confidence 9999999999999999999987754332 2220 11111 0000000011111233347788888888888888888
Q ss_pred HHHHHHHHhhccCCCCc----cccchhhHHHHHHHHHHHHHHHhhcCc-----hhHHHHHhhhhhhhhHHHhhhHHHHHH
Q 011265 376 SLRQTVDALFFEGSAPL----LESRKRSLALTVVLLVLIYFGSTMIPS-----IWTAFKFTGATTAVSLGFIFPPLVALR 446 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ia~~~p~-----~~~i~~l~Ga~~~~~~~~ilP~~~~~~ 446 (490)
+.-+.+......+..+. ..++.+-+.-..+..+.+.++++.... |+.++++.| .+..+.+.+=++.|++
T Consensus 342 ~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w~~i~~~~i~ 419 (554)
T KOG1286|consen 342 AGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSS--IGTLFAWTLVALSHLR 419 (554)
T ss_pred HhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHh--HHHHHHHHHHHHHHee
Confidence 88888777644333221 112222233333344444555554443 688888877 4556677777777777
Q ss_pred hhc
Q 011265 447 LRK 449 (490)
Q Consensus 447 ~~~ 449 (490)
.|+
T Consensus 420 ~R~ 422 (554)
T KOG1286|consen 420 FRY 422 (554)
T ss_pred eee
Confidence 655
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.21 E-value=8.1e-08 Score=99.44 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred CCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHH--HHHHHHHHhhh-c-CCCCHHHHHHHhcC
Q 011265 72 NEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEV--SVELLVRFSVL-C-KATSYGEVVQYALG 147 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~--s~~~l~~~~~~-~-~~~~y~~l~~~~~G 147 (490)
+++.|.++.++..+..+. ++..+| ++++.| ++.+.+.+++.+.+. .+....|.... + +......-+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 456888888887777775 556888 577788 455555555555533 56666676542 2 22333444688999
Q ss_pred CchhHHHHHHHHHHHHH---HHHHHHHhhcccccccccccccchhhccCcccchhHHHHHH-HHHHHHhccccccchhhh
Q 011265 148 RPAKILSEICIILNNAG---VLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILI-VLVVFLAPLCALDRIESL 223 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g---~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~l~~l 223 (490)
++..++..+...+.... ...........++.. . +.. .. .......+ ..++..+-+...+..+..
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~---~----~~~-~~----~~~~~~i~~l~i~~~~t~~n~~G~k~~ 145 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK---F----PAL-NE----DPIIKFIAALIIFWALAFSQFGGTKRT 145 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C----chh-cc----CcHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 98888765555543332 111111111121110 0 000 00 11111111 111112223334444444
Q ss_pred hhhhHHHHHHHHHH-HHHHHHHHHHHhhcCCCCC-----CCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcc
Q 011265 224 SMSSAASVALAVVF-VVVCFFIAFIKLVEGKLDP-----PRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELE 297 (490)
Q Consensus 224 ~~~s~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~-----~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 297 (490)
..++.++.+...+. .++.++........++... ....|+... .+....+..++|+|.|........+|+|
T Consensus 146 ~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~faf~G~E~~a~~a~E~k 221 (507)
T TIGR00910 146 AKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSK----VGTLVVFVAFIGAYMGVEASASHINELE 221 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCccc----ccHHHHHHHHHHHHhcHHHHHHHHHHcc
Confidence 44444433211111 1111111111111221110 111222111 1223445556899999999999999999
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHh
Q 011265 298 GRTPQKMNHVGRLTTILCIVVYSSTAI 324 (490)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 324 (490)
||+ |+++|++..+.+++.++|.+..+
T Consensus 222 nP~-r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 222 NPG-RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred CCc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999876544
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.19 E-value=1.6e-07 Score=96.78 Aligned_cols=241 Identities=12% Similarity=0.116 Sum_probs=117.8
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHHhhh-cCCCCHHHHHHHhcCCchh
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSE-VSVELLVRFSVL-CKATSYGEVVQYALGRPAK 151 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~ 151 (490)
+.+.+.-++..+.++++.. .+|.+ ++.|. ..++.+++.+++.. -.+....|.... ++.......+++.+|++..
T Consensus 2 ~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~g 77 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVSLR--GLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWG 77 (474)
T ss_pred cccHHHHHHHHHHHHHHhh--cchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHH
Confidence 4566666666666665544 55755 66784 24444444444443 355566666533 3334445567999999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHH-HHHHHhccccccchhhhhhhh
Q 011265 152 ILSEICIILNNAG---VLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIV-LVVFLAPLCALDRIESLSMSS 227 (490)
Q Consensus 152 ~~~~~~~~~~~~g---~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pl~~~~~l~~l~~~s 227 (490)
++......+.... ....+....-.+..... ...+.. ...+.....+. .....+-+...+..+..+.++
T Consensus 78 f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 78 FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA---TVDESL-----AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccCccc-----ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 8887766554421 11111111111110000 000000 01111111111 111122233444555544444
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhcCCCC-CC----CCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCc
Q 011265 228 AASVALA-VVFVVVCFFIAFIKLVEGKLD-PP----RMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTP 301 (490)
Q Consensus 228 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~-~~----~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 301 (490)
.+..... ++..++.++........++.. .+ ...|+. .++..+..+ ..+.|+|.|.+......+|+|||+
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~- 224 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDF---TNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPD- 224 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCc---cccccHHHH-HHHHHHHhchhHhHHHHHhccCcc-
Confidence 3322111 111111111111111112111 11 111211 122222222 245789999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFG 331 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG 331 (490)
|+.+|++..+..++.++|.+..+......+
T Consensus 225 r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 225 KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999887665444433
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.83 E-value=3.5e-08 Score=101.90 Aligned_cols=239 Identities=13% Similarity=0.133 Sum_probs=143.8
Q ss_pred HHHHhHhhhhch-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCchhHHHHHHHHHH
Q 011265 84 LTTTVIGAGIMA-LPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPAKILSEICIILN 161 (490)
Q Consensus 84 l~~~~iG~GiL~-lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~ 161 (490)
.+..++|+|++. .+.+..++|....++..++.+++....+.-+.|..++ ++...+.+.+++.+||.....+.+...+.
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~ 85 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLS 85 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHH
Confidence 467889999854 4578889997667788888888888888888887755 45667778889999999988888887666
Q ss_pred HHHHHHHHHHhhcccccccccccccchhhccCcccchh-HHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHH
Q 011265 162 NAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHR-KLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVV 240 (490)
Q Consensus 162 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i 240 (490)
............+..++......+. +..|... .+..++...+..+-+.-.|...+..+. -....++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~---~~~i~~~~li~ 156 (478)
T PF00324_consen 86 YIAAIAAEATAAGSFLQFWGYFPGL------PSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFI---LTIIKLIALIA 156 (478)
T ss_pred HHHHHHhhhhhhhhhhccccccccc------cccccccchhhhhhhhhhhhhhhhhhhccchHHHH---HHHHhhhHhhh
Confidence 6666666666666555432000001 0011110 011111111122222223323222222 11111111111
Q ss_pred HHHHH-HHHhhcCCCCCC----------CCCCCC---CCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhH
Q 011265 241 CFFIA-FIKLVEGKLDPP----------RMSPDF---GSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNH 306 (490)
Q Consensus 241 ~~~~~-~~~~~~~~~~~~----------~~~p~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 306 (490)
.++.. +.....++..+. ...|.- ....++.+++.++....++|.+........+|.|||+ |+.+|
T Consensus 157 ~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~-k~IPr 235 (478)
T PF00324_consen 157 FIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR-KTIPR 235 (478)
T ss_pred hhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-hhhhh
Confidence 11111 111111111111 011100 1122467899999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCC
Q 011265 307 VGRLTTILCIVVYSSTAISGYLLFGK 332 (490)
Q Consensus 307 ~~~~~~~~~~~~Y~~~g~~gy~~fG~ 332 (490)
+...+.....++|.+.....-...+.
T Consensus 236 a~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 236 ATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred HhhhhhhhhhhhhhhhhhhcccccCc
Confidence 99999999999999887766555553
No 54
>PRK11375 allantoin permease; Provisional
Probab=98.73 E-value=8e-05 Score=76.48 Aligned_cols=316 Identities=9% Similarity=0.045 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHHHHHHHH-HHHHHHHHHHHHhhcccccccc-
Q 011265 104 GLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICII-LNNAGVLVVYLIIVGDVMSGSL- 181 (490)
Q Consensus 104 G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~- 181 (490)
++.-+++.+++..++...-+.+......+. ..++.-+.|..||.+|..+..+... +...+=........++.+..+.
T Consensus 58 s~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~ 136 (484)
T PRK11375 58 STFSIMLAIILSAFFIAAVMVLNGAAGSKY-GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIG 136 (484)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccc-CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444444444444 4678889999999999888777764 3444433344444444443211
Q ss_pred ---cccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 011265 182 ---HHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPR 258 (490)
Q Consensus 182 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 258 (490)
+.....++..+..-.....++..++..++..++.. ...+.+++...++.....+..+...+..+... +..+..
T Consensus 137 ~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~ 212 (484)
T PRK11375 137 KIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIF 212 (484)
T ss_pred HhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhh
Confidence 11110111110001112223322333344555544 33566666666555433333333333333222 111111
Q ss_pred -CCCC--CCCchhhhhHHhhhhhhhhhhh-hhcchHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhHH----Hhhc
Q 011265 259 -MSPD--FGSKKAILDLLVVIPIMTNAYV-CHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISG----YLLF 330 (490)
Q Consensus 259 -~~p~--~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g----y~~f 330 (490)
..|. .+.......+..++...+-++. ...+.|.+.+..|+++ +..+....++.+...+...+|+.. ...+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~--~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~ 290 (484)
T PRK11375 213 DYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFR--AQALGQTLGLVVAYILFAVASVCIIAGASIHY 290 (484)
T ss_pred ccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1111223445555544444554 4558899999998887 777777777777777665555543 3456
Q ss_pred CCCCch--hhhcCCccccCcccchHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHhhccCCCCccccchhhHHHHHHHH
Q 011265 331 GKDTES--DVLTNFDKDLGIGYSTALNYIVRVGYIFHLILV-FPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLL 407 (490)
Q Consensus 331 G~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (490)
|+...+ +++.++.+. ......-+.+.+..+.+ ..-+.++....+...+ ++.. +++|-..+. .
T Consensus 291 g~~~~dp~~i~~~~~~~-------~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~-pk~i----~~~~~~~i~---~ 355 (484)
T PRK11375 291 GADTWNVLDIVQRWDSL-------FASFFAVLVILMTTISTNATGNIIPAGYQIAALA-PTKL----TYKNGVLIA---S 355 (484)
T ss_pred CCCcCCHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhC-cCcc----chhhHHHHH---H
Confidence 654322 233332211 22222333334443333 2345666666666654 2221 122221111 1
Q ss_pred HHHHHHHhh--c---CchhHHHHHhhhhhhhhHHHhhhH
Q 011265 408 VLIYFGSTM--I---PSIWTAFKFTGATTAVSLGFIFPP 441 (490)
Q Consensus 408 ~~~~~ia~~--~---p~~~~i~~l~Ga~~~~~~~~ilP~ 441 (490)
+++.+++.. . ..|..++++.|++.++....++==
T Consensus 356 iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi~D 394 (484)
T PRK11375 356 IISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAH 394 (484)
T ss_pred HHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122222221 1 227788888888777766554433
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.70 E-value=2.4e-05 Score=78.18 Aligned_cols=113 Identities=9% Similarity=-0.000 Sum_probs=71.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCC-CCCCCCCch----hhhhHHhhhhhhhhhhhhhcchHHHH
Q 011265 220 IESLSMSSAASVALAVVFVVVCFFIAFIKLVEG-KLDPPR-MSPDFGSKK----AILDLLVVIPIMTNAYVCHFNVQPIY 293 (490)
Q Consensus 220 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-~~p~~~~~~----~~~~~~~~~~~~~faf~~~~~~~~i~ 293 (490)
-+.+++++.+++...++.+++..+.......+. +....+ .+.+....+ ..+.+.-++-.-++.+.|....+.+.
T Consensus 196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~a 275 (550)
T KOG1289|consen 196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMA 275 (550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHH
Confidence 366777777777655554444444333222211 111111 111111111 33456677888889999999999999
Q ss_pred HhcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011265 294 NELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKD 333 (490)
Q Consensus 294 ~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~ 333 (490)
+|.||++ |+.+|.+..+..+.+++=..+-+.-.+.-+++
T Consensus 276 EE~~nAs-k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 276 EETKNAS-KAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred HHhcchh-hhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999 88999999998888887777666655566643
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.59 E-value=0.00022 Score=72.78 Aligned_cols=256 Identities=13% Similarity=0.065 Sum_probs=138.7
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKV--LGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~--~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~ 148 (490)
++|+.++++-+..-.+..+....+.+...... .++.-+++..++...+...-..+......+.+ .++..+.|..||+
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G-l~~~v~sR~~FG~ 88 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG-LPFPVLSRASFGI 88 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC-CCcchhhhhhhhh
Confidence 33445666666665655555555555444333 34555565555555555555555555555554 5566788999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhc--cCcccchhHHHHHHHHHHHHhccccccchhhhhhh
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWL--GKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMS 226 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 226 (490)
+|..+..++..+...|-........++.+..++... .+... .++ .+.......++..++.+++....-.+..+..
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i--~~~~~~~~~~-~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSI--FPGYLHLGNG-MTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--cccccccCCc-ccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999888888888887765532211 00000 000 0111222223333344443333334444445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhh-hhhhcchHHHHHhcccCCccchh
Q 011265 227 SAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNA-YVCHFNVQPIYNELEGRTPQKMN 305 (490)
Q Consensus 227 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~ 305 (490)
...+.....+.+...+ ...... .+..+.....+..+.......+..+++..+-. -....+.+.+.+.+|+|+ +-.
T Consensus 166 ~~~a~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~--~~~ 241 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLI-WALSKA-HGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK--TAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHc-CCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc--chH
Confidence 5555432222111111 111111 11111111111112223344555555554333 344668899999999988 666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhh----cCCCC
Q 011265 306 HVGRLTTILCIVVYSSTAISGYLL----FGKDT 334 (490)
Q Consensus 306 ~~~~~~~~~~~~~Y~~~g~~gy~~----fG~~~ 334 (490)
+....++.........+|+.+-.. +|+..
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 242 WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 778888888888888888887766 77553
No 57
>PRK12488 acetate permease; Provisional
Probab=98.43 E-value=0.0032 Score=66.00 Aligned_cols=145 Identities=12% Similarity=0.160 Sum_probs=91.2
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCHHHHHHHhcC-
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLIIFMGILSEV-SVELLVRFSVLCKATSYGEVVQYALG- 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~~~~~~~~~-s~~~l~~~~~~~~~~~y~~l~~~~~G- 147 (490)
..|+.+++...+.+..+.++++. ++.|....+.|+. +.... +...+.+. ...++.+-.++.+..|.+|.-++-||
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s 142 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQ 142 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCC
Confidence 46788999999999999887775 8899777778863 22111 11122221 22344555567778999999998888
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSS 227 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 227 (490)
|+.|.+..+...+........-+...+..++.+. + + .+..-+++..++++......-++...+..
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~----------g---i--~~~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF----------G---I--SYLYAVVIVGALMVLYVTFGGMLATTWVQ 207 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C---C--CHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 6688888887777776666666666665554321 1 1 11122223333455556666677777777
Q ss_pred HHHHH
Q 011265 228 AASVA 232 (490)
Q Consensus 228 ~~~~~ 232 (490)
.+-.+
T Consensus 208 ~iQ~~ 212 (549)
T PRK12488 208 IIKAV 212 (549)
T ss_pred HHHHH
Confidence 77654
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.37 E-value=0.0036 Score=64.58 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=89.4
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHH--HHHHH-HHHHHHHHHHHhhhcCCCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLII--FMGIL-SEVSVELLVRFSVLCKATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~--~~~~~-~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 146 (490)
..|+.+++...+.+..+.+|++. ++.|....+.|+........ ..+.+ ...-+..+.+..++.+..|..|.-++-|
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ry 117 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARY 117 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHc
Confidence 45688999999999999988765 77887666677532111110 01111 1111223444457788999999999999
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhh
Q 011265 147 GRP-AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSM 225 (490)
Q Consensus 147 G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 225 (490)
|++ .+.+..+...+.+++...+-+...+..+++.. + + +....+++..++++.......++...+
T Consensus 118 g~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~----------g---i--~~~~~iii~~~iv~iYt~~GG~~av~~ 182 (471)
T TIGR02119 118 NNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT----------G---L--SYLTALFIFSSSVLIYTTFGGFRAVAL 182 (471)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------C---C--CHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 965 46777777777777766666666665554321 1 1 111222233334555566666777777
Q ss_pred hhHHHHH
Q 011265 226 SSAASVA 232 (490)
Q Consensus 226 ~s~~~~~ 232 (490)
...+-.+
T Consensus 183 td~iQ~~ 189 (471)
T TIGR02119 183 TDAIQGI 189 (471)
T ss_pred HHHHHHH
Confidence 7776654
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.35 E-value=0.00061 Score=64.01 Aligned_cols=100 Identities=25% Similarity=0.324 Sum_probs=81.6
Q ss_pred HHHHHHHHHhHhhhhchHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHHHH
Q 011265 79 GAVFNLTTTVIGAGIMALPAA---MKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSE 155 (490)
Q Consensus 79 ~~~~~l~~~~iG~GiL~lP~a---f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~ 155 (490)
.-.+..+.+++|+|.=+==-. |.+=|+. |..-.++.+.+-..++..+.+..++-+.++|.|.-++.+||+...+.+
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHH
Confidence 345667779999995433222 3334553 677777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 011265 156 ICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 156 ~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
+.+.+++++.++.-+...+..+.+
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e 109 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEE 109 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHH
Confidence 999999999999988888866644
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.34 E-value=0.0058 Score=63.21 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=85.3
Q ss_pred CCCCCchHHHHHHHHHHhHhh-hhchHHHHHHHhCHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGA-GIMALPAAMKVLGLAVGFVL---IIFMGILSEVSVELLVRFSVLCKATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~af~~~G~~~g~i~---l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 146 (490)
..|+.+++...+.+..+.+|+ ..++.|....+.|+..-... .....+...+-+..+.+..++.+..|..|.-++-|
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ry 118 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARY 118 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHh
Confidence 456788888888888887766 55888866566675311111 11111111223334445567889999999999999
Q ss_pred CCch-hHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhh
Q 011265 147 GRPA-KILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSM 225 (490)
Q Consensus 147 G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 225 (490)
|++. +.+..+...+..+.....-+...+..++.+. + ++ .....++..++++.......++...+
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~----------g---i~--~~~~iii~~~iv~iYt~~GGl~av~~ 183 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT----------G---IS--YETGLLIFGITVALYTAFGGFRAVVL 183 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C---CC--HHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9654 5566665555555555555666665554321 1 11 11122233334455666666777777
Q ss_pred hhHHHHH
Q 011265 226 SSAASVA 232 (490)
Q Consensus 226 ~s~~~~~ 232 (490)
...+-.+
T Consensus 184 TD~iQ~~ 190 (483)
T PRK09442 184 TDALQGI 190 (483)
T ss_pred HHHHHHH
Confidence 7666654
No 61
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.28 E-value=0.0045 Score=61.70 Aligned_cols=268 Identities=11% Similarity=0.049 Sum_probs=140.9
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhcccccc
Q 011265 139 GEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALD 218 (490)
Q Consensus 139 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 218 (490)
..++|..||.+|.++..+++.+.+.|-.....++.++...+. ...+.++.+++..+++...+...
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---------------~~~~~~~~ili~g~l~~l~~ifG 148 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG---------------TGLPVWAGILIIGVLMTLVTIFG 148 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC---------------CCCcHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999863210 11122222233332333333222
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCCCchhhhhHHhhhhhhhhhhhh-hcchHHHHHhc
Q 011265 219 RIESLSMSSAASVALAVVFVVVCFFIAFIKLVEG-KLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVC-HFNVQPIYNEL 296 (490)
Q Consensus 219 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~m 296 (490)
.+.+...+..+.....+..... .+...+. +.....+.+ .++++.++..+++..+-.+.. -.....+.+-+
T Consensus 149 -~r~l~~l~~~a~~~~~~lf~~l----~~~~~~~~~~~~~~~~~---~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~ 220 (442)
T COG1457 149 -YRALHKLERIAVPLLLLLFLYL----LALLFRSKGGLDALWVK---GPTSPLSFLSALSLVIGSFASWGPYAADYSRYA 220 (442)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccccceeecc---CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 3444444444432111111111 1122221 111111111 123344444555544433333 44566777888
Q ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-chhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhh
Q 011265 297 EGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDT-ESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHF 375 (490)
Q Consensus 297 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 375 (490)
|+|+.+|.-.....+......+-+++|.+...+-|+.. ..+....+.. +.....+...+....+--...|
T Consensus 221 ~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---------~g~~~~lil~l~~~ttN~~nlY 291 (442)
T COG1457 221 PSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---------FGLPAILILVLGTVTTNANNLY 291 (442)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---------HHHHHHHHHHHHHHhcCcHHHH
Confidence 87775455566666777777888888888888888766 4444444332 2344445555666666666666
Q ss_pred HHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhh----cCchhHHHHHhhhhhhhhHHHhhhHHHHHH
Q 011265 376 SLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTM----IPSIWTAFKFTGATTAVSLGFIFPPLVALR 446 (490)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~----~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~ 446 (490)
...-.+.+...+- ++..|.+...+. ...+++.. ..++..++.++|..........+-=.+..|
T Consensus 292 sa~ls~~~i~~~l-----~k~~~~v~~~v~---igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~r 358 (442)
T COG1457 292 SAGLSFANIIPKL-----SKVTRVVIAGVG---IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIVR 358 (442)
T ss_pred HHHHHHHHhhhhh-----hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665555544221 122222222221 33344443 456677777777665554444333333333
No 62
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.23 E-value=0.0073 Score=59.69 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHHHHhHhhhhchHHHH-HHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHHHHHHHH
Q 011265 83 NLTTTVIGAGIMALPAA-MKVLG--LAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICII 159 (490)
Q Consensus 83 ~l~~~~iG~GiL~lP~a-f~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~ 159 (490)
.+..-.+|+|.|-.|-. -+++| |..+.+.+++.++..-..+.. ...+.+ .+|.++.+ .+||+...+..+++.
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g-G~~~~l~~-~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG-GGYDSLSA-RIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC-CCHHHHHH-HhChHHHHHHHHHHH
Confidence 46677799999999944 55666 777887777777666554444 222232 57888855 456777777666665
Q ss_pred HHH
Q 011265 160 LNN 162 (490)
Q Consensus 160 ~~~ 162 (490)
+..
T Consensus 78 l~i 80 (378)
T TIGR00796 78 LTI 80 (378)
T ss_pred HHH
Confidence 443
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.21 E-value=0.012 Score=61.72 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCCCCchHHHHHHHHHHhHh-hhhchHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHhcC-
Q 011265 71 SNEGSGVAGAVFNLTTTVIG-AGIMALPAAMKVLGLAVGFVLIIFMGILSE-VSVELLVRFSVLCKATSYGEVVQYALG- 147 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~y~~l~~~~~G- 147 (490)
..|+.+++...+.+..+.++ ...++.|....+.|+- +....+. ..+.+ ....++.+-.++.+..|..|.-++-||
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s 142 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLGRYTFADVASYRLKQ 142 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCC
Confidence 45677888877777777666 4568999777777863 2222221 22222 233445565677788999999998887
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhh
Q 011265 148 RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSS 227 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s 227 (490)
|..|.+..+...+.........+...+..++.+ .+- .+..-+++..++++......-++...+..
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~----------~gi-----~~~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELL----------FGL-----NYHVAVVLVGILMVMYVLFGGMLATTWVQ 207 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HCC-----CHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 556777776666666655556666666554332 111 11222233333455555566677777777
Q ss_pred HHHHH
Q 011265 228 AASVA 232 (490)
Q Consensus 228 ~~~~~ 232 (490)
.+-.+
T Consensus 208 ~iQ~~ 212 (549)
T TIGR02711 208 IIKAV 212 (549)
T ss_pred HHHHH
Confidence 66654
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.21 E-value=0.0069 Score=60.55 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHHHHH
Q 011265 77 VAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEI 156 (490)
Q Consensus 77 ~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 156 (490)
|....+++.+-..|..... .++.-+++..++..++...-..+......+. ..++.-+.|..||++|..+..+
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-Gl~~~v~sR~~FG~~Gs~~~~~ 78 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-GLSAMGSLKLSLGSKGSVLPSL 78 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcCHHHHHHHHHccchhhHHHH
Confidence 3344455555555443211 5555555555555555444444444444444 4667889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHH
Q 011265 157 CIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVV 236 (490)
Q Consensus 157 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 236 (490)
...+...|--.......++.+..+.+. ..+.. .....+. +..++..+.+.. ..+.++++..++..+..+
T Consensus 79 l~~i~~igW~~v~~~~gg~~l~~~~~~------~~~~~---~~~~~~~-i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i 147 (386)
T TIGR02358 79 LNLLQLVGWTAVMIIVGAKAASLLGGR------LFGEE---SPMLWIL-IVGILVTLWLLS-GPLAFVWLNNWSVWLLLI 147 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCC---chHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999888888888888888877664321 11111 1111222 222233333332 356666666666643333
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhh-hhhhcchHHHHHhcccCCccchhHHHHHHHHHH
Q 011265 237 FVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNA-YVCHFNVQPIYNELEGRTPQKMNHVGRLTTILC 315 (490)
Q Consensus 237 ~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~ 315 (490)
..+...+.... +.+.......| ...++. .+++...-. -......+.+.+..|+|+ +.-+....+..+.
T Consensus 148 ~~~~~~~~~~~---~~~~~~~~~~~---~~~s~~---~~~~~~~~~~~swa~~~~DysRy~k~~~--~~~~~~~~G~~i~ 216 (386)
T TIGR02358 148 ATLWLLVVVFS---KADLSELWNRA---GDMSFA---VAVELVIAMPLSWLPLIADYTRFARNPR--HVFLGTVLGYFIG 216 (386)
T ss_pred HHHHHHHHHHh---ccchhhhcCCC---CCccHH---HHHHHHHHHHHHHHHHccchhhhcCCCc--ceehHHHHHHHHH
Confidence 22222222211 11111111111 112222 233222211 122334788888888777 8888888899999
Q ss_pred HHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 011265 316 IVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALF 385 (490)
Q Consensus 316 ~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~ 385 (490)
..+..++|.....+.++....++..... .....-+...+....+-..+.++....+....
T Consensus 217 ~~~~~~~G~~~~~a~~~~d~~~~~~~~g----------~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 217 SCWMYFLGLAVTLATGQTDIISILAGAG----------LGIPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHhcc----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887776542222222111 11122233444445555666777777766665
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.20 E-value=0.011 Score=61.05 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=83.4
Q ss_pred CCCCCchHHHHHHHHHHhHh-hhhchHHHHHHHhCHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNLTTTVIG-AGIMALPAAMKVLGLAVGFVLII---FMGILSEVSVELLVRFSVLCKATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG-~GiL~lP~af~~~G~~~g~i~l~---~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~ 146 (490)
..|+.+.+-.......+.++ .-.+++|....+.|+....+... .......+-...+.+..++.+..|.+|.-+.-|
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf 115 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARF 115 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHc
Confidence 45566777777777777777 88899998888788544333332 444444555666666667778999999999999
Q ss_pred C-CchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 147 G-RPAKILSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 147 G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
| +..|.+..+...+.....+..-+...+..++.
T Consensus 116 ~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~ 149 (493)
T COG0591 116 GSKILRILSALIIIVFFIPYIALQLVAGGLLLSL 149 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9 89999999999999999999999999987643
No 66
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.14 E-value=0.0051 Score=62.18 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=92.8
Q ss_pred CCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCC-c
Q 011265 72 NEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGR-P 149 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~-~ 149 (490)
.|+.+++...+.+..+.+|++ .++.|....+-|+. +....+..........++..+..++.+..|..|.-+.-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 357788888888888777765 48888766667753 22222233333344555566666777899999999999998 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265 150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~ 229 (490)
.+.+..+...+..+......+...+..++... + + ......++.+++++......-++...+...+
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~----------g---i--~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~i 145 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELIT----------G---L--DLYLSLLLLGAITILYTVFGGLKAVVWTDTI 145 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C---c--hHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 77777777777777777777777776664421 1 1 1122223333344455566667777777776
Q ss_pred HHH
Q 011265 230 SVA 232 (490)
Q Consensus 230 ~~~ 232 (490)
-.+
T Consensus 146 Q~~ 148 (407)
T TIGR00813 146 QAV 148 (407)
T ss_pred HHH
Confidence 654
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.08 E-value=0.0046 Score=62.51 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=81.6
Q ss_pred CCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCch
Q 011265 72 NEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPA 150 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~ 150 (490)
.|+.+++...+.++.+.+|++ +++.|....+.|+. +....+............+.+-.++.+..|..|.-++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCch
Confidence 467888888888888888775 58889777778864 2222233333333444555666668889999999999999988
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 151 --KILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 151 --~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+.+..+...+.........+...+..++... + ++... ..++..++++......-++...+...
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~----------g---i~~~~--~~~i~~~i~~iYt~~GGl~av~~td~ 148 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF----------G---IPYNT--AILIVGVIVIIYTFFGGLRAVAWTDF 148 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----------T-----HHH--HHHHHHHHHHHTTCTT------SHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhcc----------c---hhhhH--HHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence 6666666666666666677777776654321 1 11122 22233334455666666777776666
Q ss_pred HHHHH
Q 011265 229 ASVAL 233 (490)
Q Consensus 229 ~~~~~ 233 (490)
+-.++
T Consensus 149 iQ~~i 153 (406)
T PF00474_consen 149 IQGVI 153 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 68
>PRK09395 actP acetate permease; Provisional
Probab=97.99 E-value=0.033 Score=58.57 Aligned_cols=146 Identities=12% Similarity=0.126 Sum_probs=86.8
Q ss_pred CCCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcC-C
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALG-R 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G-~ 148 (490)
..|+.+++...+.+..+.++++ .++.|....+.|+.. ....+...+.......++.+-.++.+..|+.|.-+.-|| |
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~ 145 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQG 145 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCc
Confidence 4567888888888888877765 489997777778642 222211111112223344555567788999999999999 5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
+.|.+..+...+........-+...+..++.+. + ++ .....++..++++......-++...+...
T Consensus 146 ~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~----------g---i~--~~~~ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 146 PIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF----------G---LN--YHVAVVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------C---CC--HHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 578887777666555555555555555443311 1 11 12222233334555566666777676666
Q ss_pred HHHH
Q 011265 229 ASVA 232 (490)
Q Consensus 229 ~~~~ 232 (490)
+-.+
T Consensus 211 iQ~i 214 (551)
T PRK09395 211 IKAV 214 (551)
T ss_pred HHHH
Confidence 6554
No 69
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.036 Score=55.29 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHH-HHHhCHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCCHHHHHHHhcCCchh
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAA-MKVLGLAVGFVLIIFMGILSEVSVE-LLVRFSVLCKATSYGEVVQYALGRPAK 151 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~g~i~l~~~~~~~~~s~~-~l~~~~~~~~~~~y~~l~~~~~G~~~~ 151 (490)
.....+.-+.+..+-+|+|-++.-.. =++-|+-+..+++ ...+..+-.. +..|...- ..++..|.+++.++|+..
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vil--ls~l~~~~~Q~~~arLgiv-TG~~laq~ir~~y~~~~~ 92 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVIL--LSNLMAYILQELSARLGIV-TGKGLAEAIRERYLPGLG 92 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHccchHH
Confidence 34555556667777777775555432 2344544333222 2222222111 11122222 267789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 011265 152 ILSEICIILNNAGVLVVYLIIVGDVM 177 (490)
Q Consensus 152 ~~~~~~~~~~~~g~~~~y~i~~~~~l 177 (490)
++..+...+....+.++..+..+--+
T Consensus 93 ~~~~~~~~i~~~at~iae~~G~aial 118 (416)
T COG1914 93 ILLWILAEIAGIATDIAEVAGIAIAL 118 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888777544
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.85 E-value=0.057 Score=56.86 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=87.3
Q ss_pred CCCCCchHHHHHHHHHHhHhh-hhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGA-GIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~-GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 149 (490)
..|+.+++...+.+..+.+++ ..++.|....+.|+..-.. .............++.+-.++.+..|..|.-++-||++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAY-LMGWTGGYVLLALLLAPYLRKFGKYTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHhCCC
Confidence 467889999999999888865 4588997766677532111 11111111223455666667888999999999999855
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhH
Q 011265 150 -AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSA 228 (490)
Q Consensus 150 -~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~ 228 (490)
.+.+..+...+........-+...+..++.+. + + +....+++..++++......-++...+...
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~----------g---i--~~~~~iii~~~i~~iYt~~GG~~aV~~TD~ 173 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFL----------E---V--DFETGVFIGMAIVFFYAVLGGMKGVTWTQV 173 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------C---C--CHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 57776666666555555555555554443311 1 1 111222233334555566666777777666
Q ss_pred HHHH
Q 011265 229 ASVA 232 (490)
Q Consensus 229 ~~~~ 232 (490)
+-.+
T Consensus 174 iQ~i 177 (552)
T TIGR03648 174 AQYI 177 (552)
T ss_pred HHHH
Confidence 6653
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=97.85 E-value=0.042 Score=55.33 Aligned_cols=205 Identities=12% Similarity=0.119 Sum_probs=103.7
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011265 103 LGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLH 182 (490)
Q Consensus 103 ~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 182 (490)
.++.-+++..++...+...-..+......+. ..++..++|..||.+|..+..+...+...|-........++.++...
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~- 116 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT- 116 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-
Confidence 4455555555555444444444444444444 56788899999999999998888777776655555555554433211
Q ss_pred ccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 011265 183 HTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPD 262 (490)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~ 262 (490)
+ ++.... + ++..++..+..... .+.+++...++.....+..+...+....+ .++..+....+.
T Consensus 117 ---------~---~~~~~~-~-~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~~~~~~~~~~~~~~--~~g~~~~~~~~~ 179 (404)
T PRK11017 117 ---------G---LDINLL-I-VLSGLLMTVTAYFG-ISALTILSRIAVPAIALLGGYSVWLAVND--VGGLDGLKAIVP 179 (404)
T ss_pred ---------C---CCHHHH-H-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhhhcCCC
Confidence 1 111111 1 12222333333332 34444444444432222222221111111 111111111111
Q ss_pred CCCchhhhhHHhhhhhhhhhh-hhhcchHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 011265 263 FGSKKAILDLLVVIPIMTNAY-VCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGK 332 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~ 332 (490)
. . ...+..++...+-.+ ....+.+.+.+..|+|+ +.......++.+...+..++|...-...|+
T Consensus 180 ~-~---~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~--~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 180 A-E---PLDFSAALTLVVGSFISGGTLTADFVRFGRSAK--IAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred C-C---cccHHHHHHHHHHHHHHhHhcCCChHhhccCcc--ceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 1 123334444433333 33567888999888776 655666777777777777778776666664
No 72
>PRK10484 putative transporter; Provisional
Probab=97.79 E-value=0.07 Score=55.81 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=57.7
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 149 (490)
..|+.+++-..+.+..+.++++. ++.|....+.|+...... ............++.+-.++.+..|..|.-++-||++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-VTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCch
Confidence 46688898888888888776655 788966666785421111 1111111223334444445678899999999999998
Q ss_pred hhHHHHHHHHHH
Q 011265 150 AKILSEICIILN 161 (490)
Q Consensus 150 ~~~~~~~~~~~~ 161 (490)
.+.+......+.
T Consensus 115 ~~~~~~~~~~i~ 126 (523)
T PRK10484 115 TRRIVSILFLIG 126 (523)
T ss_pred hHHHHHHHHHHH
Confidence 887766654443
No 73
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.68 E-value=0.079 Score=53.78 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011265 134 KATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGD 175 (490)
Q Consensus 134 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~ 175 (490)
..++..|++++-+||+..++..+...+...++..+...-.+-
T Consensus 92 TG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~ 133 (439)
T PRK00701 92 TGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAI 133 (439)
T ss_pred cCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366799999999999988887777777666666666655543
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.68 E-value=0.098 Score=54.38 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=79.6
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHH-----HHhhhcCCCCHHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLIIFMGILS-EVSVELLV-----RFSVLCKATSYGEVVQ 143 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~-----~~~~~~~~~~y~~l~~ 143 (490)
..|+.+++...+.+..+.+++.. ++.|....+.|+..- ...+...+. .....++. ...++.+..|..|.-+
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES--WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 46688999988888888887776 778977777886421 111111111 11112221 1223567889999999
Q ss_pred HhcCCchhH---HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccch
Q 011265 144 YALGRPAKI---LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRI 220 (490)
Q Consensus 144 ~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l 220 (490)
+-||++.+. +..+...+.....+..-+...+..++.. .+ + +.....++..++++......-+
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~----------~g---i--~~~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFEST----------FG---M--SYETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hC---C--CHHHHHHHHHHHHHHHHHhhhH
Confidence 999965433 3444444444443344344444443321 11 1 1222223333455666666777
Q ss_pred hhhhhhhHHHHH
Q 011265 221 ESLSMSSAASVA 232 (490)
Q Consensus 221 ~~l~~~s~~~~~ 232 (490)
+...+...+-.+
T Consensus 181 ~aV~~TD~iQ~~ 192 (502)
T PRK15419 181 LAVSWTDTVQAS 192 (502)
T ss_pred HHHHHHHHHHHH
Confidence 777777777664
No 75
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.66 E-value=0.082 Score=53.17 Aligned_cols=215 Identities=13% Similarity=0.129 Sum_probs=101.1
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-C-CCCchhhhhHHhhhhhhhhhhh-hhcchHHH
Q 011265 216 ALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSP-D-FGSKKAILDLLVVIPIMTNAYV-CHFNVQPI 292 (490)
Q Consensus 216 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p-~-~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i 292 (490)
..+.++++++.-.++-.+..+.+...++....+. ++.......| . .+....++.+...+...+--|+ ..-|+|..
T Consensus 186 ~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a--~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DF 263 (497)
T COG1953 186 LFKGMESIRKFETWAGPLVYIAMLGLAIWALVKA--GGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDF 263 (497)
T ss_pred HhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhc--CCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 3444677777666665433333333333332221 1111111122 1 1222233444344433332332 25688999
Q ss_pred HHhcccCCccchhHHHHHHHHHHHHHHHH----HHhHHHhhcCCCC--chhhhcCCccccCcccchHHHHHHHHHHHH-H
Q 011265 293 YNELEGRTPQKMNHVGRLTTILCIVVYSS----TAISGYLLFGKDT--ESDVLTNFDKDLGIGYSTALNYIVRVGYIF-H 365 (490)
Q Consensus 293 ~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~----~g~~gy~~fG~~~--~~~il~~~~~~~~~~~~~~~~~~~~~~~~i-~ 365 (490)
.+.-|+|+ .-.+--.++.-+.+.++-+ .+..++..||+.. ..++..++.+.. ....+.-+.+++ +
T Consensus 264 sRfa~s~~--~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~------~~~fl~~l~~~iat 335 (497)
T COG1953 264 TRFAKSQK--AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGF------YAAFLAGLTFAVAT 335 (497)
T ss_pred hcccCChh--hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccch------HHHHHHHHHHHHHH
Confidence 99988887 3333344444444444444 4555777899884 457788887651 111011111111 1
Q ss_pred HHHhhhhhhhHHHHHHHHhhccCCCCccccchh--hHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHH
Q 011265 366 LILVFPVVHFSLRQTVDALFFEGSAPLLESRKR--SLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLV 443 (490)
Q Consensus 366 ~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~ 443 (490)
+-+...=+..+...-+..++ ++. -+.+| .+.....+++.++-+-..-..+...++..|++.+++...++-=.+
T Consensus 336 i~~Ni~aN~vsp~~D~s~l~-Pk~----in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyf 410 (497)
T COG1953 336 ISTNIAANIVSPGYDLSALF-PKY----INIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYF 410 (497)
T ss_pred HhhhHHhccCChHHHHHHhc-ccc----cchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222233333332 222 12233 233334444444444444556778888888888887775554444
Q ss_pred HH
Q 011265 444 AL 445 (490)
Q Consensus 444 ~~ 445 (490)
..
T Consensus 411 li 412 (497)
T COG1953 411 LV 412 (497)
T ss_pred hh
Confidence 33
No 76
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.66 E-value=0.1 Score=54.08 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=77.8
Q ss_pred CCCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH----Hhh-hcCCCCHHHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR----FSV-LCKATSYGEVVQY 144 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~----~~~-~~~~~~y~~l~~~ 144 (490)
..|+.+++...+.+..+.+++. .++.|....+.|+.... ......+........+.+ ..+ +.+..|..|.-++
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~-~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELW-IAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 4567888888888888877655 57789666667864321 111111112222333333 222 5678899999999
Q ss_pred hcCCchhH---HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchh
Q 011265 145 ALGRPAKI---LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIE 221 (490)
Q Consensus 145 ~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~ 221 (490)
-||++.+. +..+...+........-+...+..++.+ .+- ......++..++++......-++
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~----------~gi-----~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFEST----------FGL-----DYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCc-----cHHHHHHHHHHHHHHHHHhhhHH
Confidence 99965433 3344333333333333444444443321 111 11222233334455556666677
Q ss_pred hhhhhhHHHHH
Q 011265 222 SLSMSSAASVA 232 (490)
Q Consensus 222 ~l~~~s~~~~~ 232 (490)
...+...+-.+
T Consensus 178 av~~TD~iQ~~ 188 (487)
T TIGR02121 178 AVSWTDFVQGL 188 (487)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.51 E-value=0.011 Score=60.64 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=45.2
Q ss_pred hHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhh
Q 011265 271 DLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLL 329 (490)
Q Consensus 271 ~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 329 (490)
++...|+++.-+-.+...=-....|+|+|+ |..+|-...+...++++|.++.++.-.+
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PS-kSIP~GTl~ava~Tf~~Yvl~~flm~~t 352 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPS-KSIPKGTLSAVAFTFFVYVLVIFLMGCT 352 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCcc-ccCCccchHHHHHHHHHHHHHHHHhccC
Confidence 455666666666666666666778999999 8899999999999999999987765443
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.48 E-value=0.001 Score=68.09 Aligned_cols=249 Identities=12% Similarity=0.095 Sum_probs=118.4
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCC
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVL--GLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGR 148 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~ 148 (490)
++|+.++++.+..-.+..+....+.+-...... ++.-+++.+++..++...-..+......|. ..++..++|..||.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-Gl~~~v~sR~~FG~ 83 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-GLPTMVLSRASFGY 83 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-T
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCchhcchhccCc
Confidence 445666777776666666666655555444333 455566666665555555555555555555 45677788999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccccccc-ccchhhccCcc--cchhHHHHHHHHHHHHhccccccchhhhhh
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHT-GVFDQWLGKGM--WDHRKLLILIVLVVFLAPLCALDRIESLSM 225 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~ 225 (490)
+|..+..+...+...|-......+.++.+....+.. +. ....++.. .....+...+...++..+.. ...++.++.
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~l~~ 161 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-FLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKALRR 161 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----------HHHHHHHHHHHHHH-CTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-chhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHHHHh
Confidence 999999999998888888888888888877643321 10 00000000 00111111111111222222 222444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCchhhhhHHhhhhhhhhhh-hhhcchHHHHHhcccCCccch
Q 011265 226 SSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAY-VCHFNVQPIYNELEGRTPQKM 304 (490)
Q Consensus 226 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~faf-~~~~~~~~i~~~m~~p~~~~~ 304 (490)
...+.........+... .+...+.+..+....+....... .+..++...+-.+ ....+.+.+.+.+|+++ +-
T Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~--~~ 234 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGML---IWALSKAGGGPLLSAPASPSPSG--SFLAAIALVIGSWISWAPNASDYSRYAKSDT--SA 234 (440)
T ss_dssp HHHCCHHHHHHHHHHHH---HHHHHHCT-HHHCCS--S----S---HHHHHHHHHCCCHHHHCCCHHHHTTC--HH--HH
T ss_pred HHhhhhHHHHhhhhhee---EEEeecCCcchhhhCcccchhHH--HHHHHHHHHHhhhhhhhhccccHHhhCCCCC--Cc
Confidence 44444321122111111 11111111111011110000011 2223333333222 33456778999999877 77
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHhh
Q 011265 305 NHVGRLTTILCIVVYSSTAISGYLL 329 (490)
Q Consensus 305 ~~~~~~~~~~~~~~Y~~~g~~gy~~ 329 (490)
.+....++.........+|+++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 235 WWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhhhHHHHHHHHHHHHHHH
Confidence 7778888877777777777776554
No 79
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.42 E-value=0.17 Score=50.71 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCH-----HHHH
Q 011265 73 EGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGI----LSEVSVELLVRFSVLCKATSY-----GEVV 142 (490)
Q Consensus 73 ~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~----~~~~s~~~l~~~~~~~~~~~y-----~~l~ 142 (490)
++.|.+|+.+..+.+.+|+| ++++|.|...+| ..+++.|-+.++ ..+.-..+-.+.+++.+..+| ..+-
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 35899999999999999998 999999988777 233222222222 223333334444444444446 6776
Q ss_pred HHhcCCchhHHHHHH
Q 011265 143 QYALGRPAKILSEIC 157 (490)
Q Consensus 143 ~~~~G~~~~~~~~~~ 157 (490)
+...||+...++.++
T Consensus 124 ~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF 138 (425)
T ss_pred HHhCccHHHHHHHHH
Confidence 777778777776666
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.32 E-value=0.013 Score=56.49 Aligned_cols=106 Identities=23% Similarity=0.201 Sum_probs=86.9
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHhcCCchhH
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR-FSVLCKATSYGEVVQYALGRPAKI 152 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~y~~l~~~~~G~~~~~ 152 (490)
..+.+..+.+=..++-|+|...=|-.=.+-||.++.+.+++.+++.-.-.-+..- .+-|++.+|.+|++++..||+++.
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~ 130 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKK 130 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHH
Confidence 4567778889999999999999997668999999988776665554443333333 346778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 153 LSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
++.+...+.+.....++..+.++.+.+
T Consensus 131 lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 131 LFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998887754
No 81
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.23 Score=51.89 Aligned_cols=103 Identities=14% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCHHHHHHHhcCC
Q 011265 73 EGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVL---CKATSYGEVVQYALGR 148 (490)
Q Consensus 73 ~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~y~~l~~~~~G~ 148 (490)
+-++..+.+.-.+-.+.|.=. +=+-|....+|..-|.++.+++++.+..|..-+...+.. ....+|--+ .+.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmI-SRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMI-SRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEE-ecccCc
Confidence 345666677777778887765 445688888888888888888888777777777766544 234455433 334555
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccc
Q 011265 149 PAKILSEICIILNNAGVLVVYLIIVGDV 176 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~ 176 (490)
-..-.+.+++++-.-.....|++-.-+.
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi 219 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEI 219 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHH
Confidence 5444444444444444444444443333
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.18 E-value=0.11 Score=51.52 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011265 134 KATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVM 177 (490)
Q Consensus 134 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 177 (490)
..++..|..++-+||+..++..+...+.......+.....+.-+
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888899999999998888888888877777776666444
No 83
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.97 E-value=0.47 Score=47.22 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=42.5
Q ss_pred CCCCCCchhhhhHHhhhhhhhhhhhh-hcchHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhH
Q 011265 260 SPDFGSKKAILDLLVVIPIMTNAYVC-HFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAIS 325 (490)
Q Consensus 260 ~p~~~~~~~~~~~~~~~~~~~faf~~-~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 325 (490)
.||+++-.+..-...+++...|+.+- .....+..+-++|++ +..+........-+.+=.+.|+.
T Consensus 204 ~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~--~l~~sa~~v~~~n~~~s~lAGl~ 268 (439)
T COG0733 204 KPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKS--DLVSSALSIVLLNTLISLLAGLV 268 (439)
T ss_pred cCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chhhhHHHHHHHHHHHHHHHHHH
Confidence 35554444444566888999898875 455566667787777 88887777666666655555544
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=96.72 E-value=0.026 Score=58.22 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHhcCCchhHHH
Q 011265 76 GVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR-FSVLCKATSYGEVVQYALGRPAKILS 154 (490)
Q Consensus 76 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~y~~l~~~~~G~~~~~~~ 154 (490)
+.+-.+-+=..++-|+|.+-=|.--.+.||.|+.+.+++..++...-.-+..- .+.|++.+|.+|++++..|++++.++
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 44456778889999999999997777999999998776655544333322222 24567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q 011265 155 EICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 155 ~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
.+..++.+.....++..++.+.+..
T Consensus 164 li~i~~iliiviAvfalvvv~al~~ 188 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVKALTH 188 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988888888888877643
No 85
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.70 E-value=0.79 Score=45.82 Aligned_cols=186 Identities=14% Similarity=0.109 Sum_probs=100.6
Q ss_pred HHHHHhhhcCCCCHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHH
Q 011265 125 LLVRFSVLCKATSYGEVVQYALG-RPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLI 203 (490)
Q Consensus 125 ~l~~~~~~~~~~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (490)
++.+.-|+.+..++.|....-++ ++.|.+..+.-.+.-+...++-+.-.+..+.-+ ++.+ +.+-
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l----------~gv~-----~~vg 157 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLL----------LGVP-----YHVG 157 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------hCCC-----ceee
Confidence 44556688889999997766555 677888777776666666666666666554321 1111 1111
Q ss_pred HHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC--------CC------CCCCCCCCCchhh
Q 011265 204 LIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKL--------DP------PRMSPDFGSKKAI 269 (490)
Q Consensus 204 ~~~~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~------~~~~p~~~~~~~~ 269 (490)
+++..++++.......++...|.+.+--+..+...++..+....+...++. .+ ....|.... .++
T Consensus 158 v~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~-~~~ 236 (529)
T COG4147 158 VVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLY-KDP 236 (529)
T ss_pred hhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcc-cCH
Confidence 222233555556677788888888777653333333333333333211110 01 111222211 223
Q ss_pred hhHHhhhhhhhhhhhhhcchHHHHH-hcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhh
Q 011265 270 LDLLVVIPIMTNAYVCHFNVQPIYN-ELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLL 329 (490)
Q Consensus 270 ~~~~~~~~~~~faf~~~~~~~~i~~-~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 329 (490)
.++....-..++ +..-+|.+.- ----|+.|.-+|.+..+..+...+|+..-+.|+.+
T Consensus 237 i~~isl~~aLm~---GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 237 IDFISLGFALMV---GTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HHHHHHHHHHHH---ccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222233 3333333321 11245556899999999999999999988877764
No 86
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.26 E-value=0.09 Score=53.18 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=86.2
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHhcCCchhH
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR-FSVLCKATSYGEVVQYALGRPAKI 152 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~y~~l~~~~~G~~~~~ 152 (490)
..+.+..+-+=..++-|+|.+.=|---+|.||.+|.+.+++.+++..--.-+++- .+.|++.+|.+|++++.+|+..+.
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 3466677888899999999999999999999999988777666655444333333 245677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 153 LSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
++.+...+.+......+..+..+.+.+
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999988888888888877654
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.039 Score=56.12 Aligned_cols=226 Identities=12% Similarity=0.125 Sum_probs=119.7
Q ss_pred chHHH-HHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCHHHHHHHhcCCch
Q 011265 76 GVAGA-VFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKA---TSYGEVVQYALGRPA 150 (490)
Q Consensus 76 s~~~~-~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~---~~y~~l~~~~~G~~~ 150 (490)
+|+.. +.-+.-.+-|.=+ |=++|...|+|...|++++.....++..|..--.....+... ..|- +..+.+|+..
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yf-lis~slg~ef 109 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYF-LISRSLGPEF 109 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEE-EEEecccccc
Confidence 44433 3334444445433 678899999999999988877777766665544443333321 2222 2234556666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHH
Q 011265 151 KILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAAS 230 (490)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~ 230 (490)
.--+.+...+...-.+..|.+.+++.+..++...+ .+..+- +..++.++.+.++..+ .+|...+-
T Consensus 110 ggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s---------~~~i~g--i~~vt~~ill~i~~ag----~~w~~k~q 174 (643)
T KOG2083|consen 110 GGSIGIIYAFANAVATAMYVVGFAESVAHLFETES---------KEMIDG--IGSVTVLILLAINVAG----VEWEAKLQ 174 (643)
T ss_pred cchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc---------HHHhcc--hhHHHHHHHHHhhhcc----chhHHHHH
Confidence 55666666666666777788888877655332211 111111 2222222333333322 22222222
Q ss_pred HHHHHHHHHHHHHHHHHH-hh-c-----CCC------CCCCCCCCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcc
Q 011265 231 VALAVVFVVVCFFIAFIK-LV-E-----GKL------DPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELE 297 (490)
Q Consensus 231 ~~~~~~~~~i~~~~~~~~-~~-~-----~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 297 (490)
++..+ .+++.+.-.+.. .+ . +.. -..+..|++.+.. ++|+.|+++.=+..+.-.=..+...++
T Consensus 175 ~~ll~-il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~---tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 175 IVLLL-ILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGY---TFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HHHHH-HHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCC---ceEeeeeeecchhhhhhccccccCCCC
Confidence 21001 111111111111 11 1 100 0112334444332 455666777777777666677889999
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHH
Q 011265 298 GRTPQKMNHVGRLTTILCIVVYSST 322 (490)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~Y~~~ 322 (490)
+|+ +..++-...+..++..+|..+
T Consensus 251 ~Pq-~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 251 DPQ-KAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred Cch-hhcccchhhhhhhhhhhhhhh
Confidence 999 888999999999999999655
No 88
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.88 E-value=5.9 Score=41.48 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred CchHHHHHHHHHHhHhhh-hchHHHH-HHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q 011265 75 SGVAGAVFNLTTTVIGAG-IMALPAA-MKVLG---LAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQY 144 (490)
Q Consensus 75 ~s~~~~~~~l~~~~iG~G-iL~lP~a-f~~~G---~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~ 144 (490)
.|..+-+...++..+|.| +.-.|+- .+++| +++=.+++++.+.=-.+.-..+.+..++....-|.+++..
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~ 79 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPI 79 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467788899999999998 8999966 55555 2233333344444444444555565566555556666544
No 89
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.38 E-value=6.4 Score=39.66 Aligned_cols=264 Identities=11% Similarity=0.040 Sum_probs=128.2
Q ss_pred CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCHHHHHHHhc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLG--LAVGFVLIIFMGILSEVSVELLVRFSVLCK--ATSYGEVVQYAL 146 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~--~~~y~~l~~~~~ 146 (490)
++|+=|+++-+..=....++.+.--+..+--+.| |.-+++...+.-. +++..++-..+.+. ..+++-..|..|
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~---~~~~f~~lns~~G~~yhIsFpv~sR~sF 128 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYL---FTAIFLVLNSRPGSDYHISFPVLSRSSF 128 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHH---HHHHHHHHccCCCcccccceeeeeeeeh
Confidence 5678899999888888888888888887777788 5545444332222 12222222222111 344555556666
Q ss_pred CCch---hHHHHHHHHHHHHHHHHHHHHhhcc----cccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccc
Q 011265 147 GRPA---KILSEICIILNNAGVLVVYLIIVGD----VMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDR 219 (490)
Q Consensus 147 G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 219 (490)
|-++ ..+..+.+....||+.. -+.++ .+.+..++....++.++....+...++-.++.-++.+|..+.|
T Consensus 129 GiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~- 204 (572)
T KOG2466|consen 129 GIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFP- 204 (572)
T ss_pred hhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeecc-
Confidence 6443 44555666666665432 11111 1122333333344444433333334444444445666666655
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CCCCchhhhhHHhhhhhhhhhhh-hhcchHHHHHhcc
Q 011265 220 IESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSP-DFGSKKAILDLLVVIPIMTNAYV-CHFNVQPIYNELE 297 (490)
Q Consensus 220 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~ 297 (490)
..+++.+-....+.+....+..++....+. .| ..+..+.| ..+.....+.+..++...+=.|+ ..-|.|...+--|
T Consensus 205 p~~ir~lf~~ka~~t~fA~~g~LIw~l~kA-hG-~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~k 282 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAFGFLIWLLKKA-HG-LGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAK 282 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHHHHHhc-CC-ccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcC
Confidence 555565555554322222222222222211 11 11111111 11222222333333322222222 3567888888888
Q ss_pred cCCccchhHHHHHHHHHHHHHHH----HHHhHHHhhcCCCC--chhhhcCCccc
Q 011265 298 GRTPQKMNHVGRLTTILCIVVYS----STAISGYLLFGKDT--ESDVLTNFDKD 345 (490)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~Y~----~~g~~gy~~fG~~~--~~~il~~~~~~ 345 (490)
+|. +-...-.++.-+.+.+.. +.+..++..||..- +-++++++.++
T Consensus 283 sp~--a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~ 334 (572)
T KOG2466|consen 283 SPN--AIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDT 334 (572)
T ss_pred CCC--ccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhcc
Confidence 887 444444444444444444 44556788899763 33566666543
No 90
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=93.31 E-value=9.9 Score=38.18 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCCCCchHHHHHHHHHHhHhhhh-chHHHHHHHhCHHHHHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAGI-MALPAAMKVLGLAVGFVLII 113 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~g~i~l~ 113 (490)
++++.|.+|+++.-+.+.+|+|= -+..-|..-+| ||.+.+.
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG--PGAiFWM 56 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG--PGAIFWM 56 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc--hhHHHHH
Confidence 45579999999999999999994 67788888888 5555553
No 91
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=93.20 E-value=9.2 Score=39.65 Aligned_cols=89 Identities=11% Similarity=0.034 Sum_probs=57.3
Q ss_pred CCchHHHHHHHHHHhHhhhh-chHHHH-HHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCC
Q 011265 74 GSGVAGAVFNLTTTVIGAGI-MALPAA-MKVLG---LAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGR 148 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~Gi-L~lP~a-f~~~G---~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~ 148 (490)
-.+.++....+++..++.|= --.||- ++++| +++=.+++++.|+=-.|-=.-+.+.++.+...-+..+|-..-|
T Consensus 81 W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~G- 159 (629)
T KOG3659|consen 81 WGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKG- 159 (629)
T ss_pred chhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcC-
Confidence 34667777778887777763 456743 56666 3556677777777667766677777777777777777765544
Q ss_pred chhHHHHHHHHHHHH
Q 011265 149 PAKILSEICIILNNA 163 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~ 163 (490)
.|.-++.++.+..+|
T Consensus 160 igy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 160 IGYAICLIAFFVGLY 174 (629)
T ss_pred CchhhhHHHHHHHHH
Confidence 444444455444444
No 92
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.75 E-value=3 Score=41.40 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=52.7
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 103 LGLAVGFVLIIFMGILSEVSVELLVRFSVL-CKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 103 ~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
+|.+.++.+..+...+.+....--.+..+. ++..-..+++++.+|+.|+.+..+...+.|+.++++.....+|+++.
T Consensus 221 ~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~ 298 (378)
T TIGR00796 221 AGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHK 298 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333222221111 24455678999999999999999999999999999999999998866
No 93
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=89.36 E-value=25 Score=35.18 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=46.7
Q ss_pred HHHHHHhHhhhhchHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCHHHHHHHhcCCchhHHHHH
Q 011265 82 FNLTTTVIGAGIMALPAAMKVLG--LAVGFVLIIFMGILSEVSVELLVRFSVL---CKATSYGEVVQYALGRPAKILSEI 156 (490)
Q Consensus 82 ~~l~~~~iG~GiL~lP~af~~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~y~~l~~~~~G~~~~~~~~~ 156 (490)
+.+..+.+|+|-++ +..++| +...++..++.+.+.. ..+-+...| ...++..|++++.++|+.++...+
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~---~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~ 84 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMA---LLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLWI 84 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHH---HHHHHHHHHheeecCCCHHHHHHHHCCCchHHHHHH
Confidence 44455567777555 224444 2233333333333222 223332222 236789999999999987776666
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 011265 157 CIILNNAGVLVVYLIIVG 174 (490)
Q Consensus 157 ~~~~~~~g~~~~y~i~~~ 174 (490)
...+...++..+...-.+
T Consensus 85 ~~~l~ii~~~~~e~~G~a 102 (390)
T TIGR01197 85 LAELAIIATDMAEVIGTA 102 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544444
No 94
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=87.93 E-value=6.8 Score=40.87 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=52.8
Q ss_pred CCCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCc
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRP 149 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~ 149 (490)
..|+..++.....++.+.+|.+ ++++|.-..+.|.-...+.+..... ....+++....-.+.+..+-.|.-++-||++
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~-~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~~ 121 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLS-VLLLGWIFIPVFYRLGVTTMYEYLEKRFGGR 121 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHH-HHhhheEEEEEEEecCeeehhHHHHHHhccc
Confidence 3556777777777777777665 5899988777775433222211111 0011111111123455666677778888888
Q ss_pred hhHHHHHHHHHHHHH
Q 011265 150 AKILSEICIILNNAG 164 (490)
Q Consensus 150 ~~~~~~~~~~~~~~g 164 (490)
.+....+...+..+-
T Consensus 122 ~r~l~~l~f~l~~~~ 136 (585)
T KOG2349|consen 122 VRYLATLSFILMIFL 136 (585)
T ss_pred chhhHHHHHHHHHHh
Confidence 777766666655553
No 95
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=87.10 E-value=32 Score=33.73 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=69.4
Q ss_pred CCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHHHHHHHH-HHHHHHHHHH----HhhhcCCCCHHHHHHHh
Q 011265 72 NEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLIIFMGIL-SEVSVELLVR----FSVLCKATSYGEVVQYA 145 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~-~~~s~~~l~~----~~~~~~~~~y~~l~~~~ 145 (490)
.|+.+..-..+....+-+++. .++=|.+-.+-|+ |.+++..+-+- .+.+...+.+ .+++.+..+..|+-++-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~R 115 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFAR 115 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHH
Confidence 345555555566666666654 3566777777774 33333332222 3334444444 34677889999998877
Q ss_pred c-CCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 146 L-GRPAKILSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 146 ~-G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
+ ++...++.++...+...+..++-.+-.++.++.
T Consensus 116 Y~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~ 150 (473)
T COG4145 116 YQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLET 150 (473)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5 567788888999899898888888888887754
No 96
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=86.49 E-value=4.9 Score=40.48 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=40.9
Q ss_pred CCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011265 136 TSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSL 181 (490)
Q Consensus 136 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 181 (490)
.-..+++++.+|+.|..+..+...+.|+-++++-....+|++++..
T Consensus 261 ~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~ 306 (427)
T PF05525_consen 261 ELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF 306 (427)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356788999999999999999999999999999999999987633
No 97
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=84.39 E-value=27 Score=35.22 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=30.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhcC--chhHHHHHhhhhhhhhHHH
Q 011265 394 ESRKRSLALTVVLLVLIYFGSTMIP--SIWTAFKFTGATTAVSLGF 437 (490)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~ia~~~p--~~~~i~~l~Ga~~~~~~~~ 437 (490)
++|.|+++.|.+-++++++++.... +++.+.++.-.+-+..+-|
T Consensus 354 ~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPF 399 (503)
T KOG1291|consen 354 PPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPF 399 (503)
T ss_pred hHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhH
Confidence 4688889999999999999988764 4666666654444433333
No 98
>PRK10263 DNA translocase FtsK; Provisional
Probab=83.11 E-value=45 Score=38.46 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=20.7
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHhHHHhh
Q 011265 298 GRTPQKMNHVGRLTTILCIVVYSSTAISGYLL 329 (490)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 329 (490)
+++.++..+-+....++.+.+|+.++++.|..
T Consensus 15 ~~~~~rrL~E~~gIlLlllAlfL~lALiSYsP 46 (1355)
T PRK10263 15 KLSSGRRLLEALLILIVLFAVWLMAALLSFNP 46 (1355)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44433444445555677778888888888865
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=79.86 E-value=18 Score=36.57 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=37.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 139 GEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 139 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
...+.+.+|+.++.+..+.+.+.|+-++++....++|.+++
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999865
No 100
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=69.22 E-value=36 Score=34.45 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=89.6
Q ss_pred HHHhcccCCccchhHHHHHHHHHHHHHH-HHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhh
Q 011265 292 IYNELEGRTPQKMNHVGRLTTILCIVVY-SSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVF 370 (490)
Q Consensus 292 i~~~m~~p~~~~~~~~~~~~~~~~~~~Y-~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 370 (490)
...++.+-.+++-++....+..+..... .+....++..|+.--+ +...++-++. +..+.+ ...+.........++
T Consensus 211 ~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~-~~~~~il~~~--~~~~~~-l~~~~~~~~~~~~~~ 286 (415)
T COG0814 211 NIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGS-LVFGNILAAK--EQNISL-LSALAGVINSPILSI 286 (415)
T ss_pred cchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHcc--CchHHH-HHHHHHhhcchHHHH
Confidence 3345555554555664555555554444 4457777777774333 2223332222 111222 223333344445888
Q ss_pred hhhhhHHHHHHHHhhc------c---CCCCc-cccchhhHHHHHHHHHHHHHHHhhcC-chhHHHHHhhhhhhhhHHHhh
Q 011265 371 PVVHFSLRQTVDALFF------E---GSAPL-LESRKRSLALTVVLLVLIYFGSTMIP-SIWTAFKFTGATTAVSLGFIF 439 (490)
Q Consensus 371 pl~~~~~~~~~~~~~~------~---~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~~p-~~~~i~~l~Ga~~~~~~~~il 439 (490)
|.+.++......+.+. + +..+. ..+..|... ......++.+.++..| .+....+.+|++.....+-++
T Consensus 287 ~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~ 365 (415)
T COG0814 287 ALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKT-GLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPII 365 (415)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhh-hhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888766554321 1 00111 111223332 3334455556666665 467788888988888899999
Q ss_pred hHHHHHHhhcCCCCCChhhHHH
Q 011265 440 PPLVALRLRKEGPGLSLGEKFL 461 (490)
Q Consensus 440 P~~~~~~~~~~~~~~~~~~~~~ 461 (490)
|.+++++-++..++.+..++..
T Consensus 366 ~~ll~~~p~~~~~~~~~~~~~~ 387 (415)
T COG0814 366 PALLFIKPRKLIYKLPALKVYG 387 (415)
T ss_pred HHHHHHHHHHhcCCCCceeecC
Confidence 9999999776664455555444
No 101
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=68.39 E-value=1.6e+02 Score=31.04 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011265 136 TSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSL 181 (490)
Q Consensus 136 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 181 (490)
..+.+..+...+++++.++.+......++...+.....+..+....
T Consensus 299 ~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ama 344 (557)
T TIGR00906 299 APFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMA 344 (557)
T ss_pred cHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444446677777777777777777777777777766543
No 102
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.40 E-value=66 Score=25.65 Aligned_cols=67 Identities=13% Similarity=-0.059 Sum_probs=43.7
Q ss_pred CCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Q 011265 72 NEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSY 138 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y 138 (490)
-++.|.-+......-+....-++++|.+....+|......+++..++..+-+--+.+-.++.+..+|
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~y 81 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGY 81 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchH
Confidence 3466666666666655555567899988777788888777777766666555554444455544444
No 103
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=63.69 E-value=22 Score=31.44 Aligned_cols=65 Identities=20% Similarity=0.123 Sum_probs=50.0
Q ss_pred HHHHhhhhhhhhHHHhhhHHHHHHhhcCCC--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011265 423 AFKFTGATTAVSLGFIFPPLVALRLRKEGP--------GLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESK 487 (490)
Q Consensus 423 i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~ii~~ 487 (490)
.+=+.|++.+.-+..++|+...+.+.+++- ..+|..+....+...+|++..++...-|...+.+.
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 344567888888888999999999876632 14566778888888888888888888888877765
No 104
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=63.41 E-value=1.8e+02 Score=29.64 Aligned_cols=331 Identities=10% Similarity=0.084 Sum_probs=144.0
Q ss_pred chHHHHHHHHHHhHhhhhchHHHHHH-HhC--HHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCHHHHHHHhcCCchh
Q 011265 76 GVAGAVFNLTTTVIGAGIMALPAAMK-VLG--LAVGFVLIIFMGILSEVSVELLVRFS-VLCKATSYGEVVQYALGRPAK 151 (490)
Q Consensus 76 s~~~~~~~l~~~~iG~GiL~lP~af~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~-~~~~~~~y~~l~~~~~G~~~~ 151 (490)
.....-+.+..-..|+|=|-.|-... ++| |.++.+-.++.++.- -++.-.. .+.+ .++.|++++.- |+..
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vgl----PlLgiiava~~~-g~~~~l~~rv~-~~f~ 82 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGL----PVLTVVALAKVG-GGVDSLSTPIG-KVAG 82 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHhhcC-CCHHHHhhhcc-hHHH
Confidence 45667788889999999999995554 566 777766665544422 2222111 2222 47888877653 4333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHH
Q 011265 152 ILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASV 231 (490)
Q Consensus 152 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~ 231 (490)
.+...+..+.. +=+..+-+.-.. ....++ ....+. . +...+...++...+.+.++. +.-+.+..+|.
T Consensus 83 ~~f~~~i~l~I-----GP~~aiPRtaav-sfEm~i-~p~~~~-~-~~~~~ifs~iFF~i~~~l~l----~p~klvd~iGK 149 (439)
T PRK15433 83 VLLATVCYLAV-----GPLFATPRTATV-SFEVGI-APLTGD-S-ALPLFIYSLVYFAIVILVSL----YPGKLLDTVGN 149 (439)
T ss_pred HHHHHHHHHHH-----hhccccCCcccc-chhhee-eccCCc-c-cHHHHHHHHHHHHHHHHHHc----ChhhHHHHhHH
Confidence 33333222211 111111111110 000011 111111 0 12223333333334444443 33455566666
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCCCC-CCCCCCCCchhhh---hHHhhhhhhhhhhhhhcchHHHHHh-cccCCc--c
Q 011265 232 ALAVVFVVVCFFIAFIKLVE--GKLDPP-RMSPDFGSKKAIL---DLLVVIPIMTNAYVCHFNVQPIYNE-LEGRTP--Q 302 (490)
Q Consensus 232 ~~~~~~~~i~~~~~~~~~~~--~~~~~~-~~~p~~~~~~~~~---~~~~~~~~~~faf~~~~~~~~i~~~-m~~p~~--~ 302 (490)
+.+-+.++...+..+....+ +...++ ..+.+..-..++. +-+.+++..+|+-. .+-.+.+. .+|+++ |
T Consensus 150 ~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~i---ii~~i~~~G~~~~~~~~k 226 (439)
T PRK15433 150 FLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIV---IVNAARSRGVTEARLLTR 226 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHH
Confidence 54444443333333333332 111111 1110000011111 22344555555432 22233332 444441 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhcC---CC-CchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 011265 303 KMNHVGRLTTILCIVVYSSTAISGYLLFG---KD-TESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLR 378 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG---~~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~ 378 (490)
...++..++...-.++|...+..|...-+ +. ..+.++...-... .+++...+..+.+.+.++++--=..+.+.
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~---~G~~G~~ll~iiv~lACLTTaIGLi~a~a 303 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHT---FGGGGSFLLAALIFIACLVTAVGLTCACA 303 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466667777778888888888775422 21 2233333322211 11233334444455555555444445555
Q ss_pred HHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHh
Q 011265 379 QTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRL 447 (490)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~ 447 (490)
+.+++... . +.+.+. .++.+.+++++. -.++.++++ ....+.++.|...-+.+
T Consensus 304 ~~f~~~~~----i---sY~~~v---~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 304 EFFAQYVP----L---SYRTLV---FILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHHHhhcC----C---cHHHHH---HHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 55555431 1 111121 122222222222 234455554 56777788888766553
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=62.86 E-value=1.2e+02 Score=31.63 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=41.4
Q ss_pred cCCCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011265 133 CKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLH 182 (490)
Q Consensus 133 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 182 (490)
.......++-....||++..+...+.++..+..+++-++..++.+.....
T Consensus 322 ~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 322 SLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred CCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 33566778888899999999999999999999999999988888776444
No 106
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=61.73 E-value=1.9e+02 Score=29.38 Aligned_cols=325 Identities=13% Similarity=0.130 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHhHhhhhchHHHHHH-HhC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhHH
Q 011265 77 VAGAVFNLTTTVIGAGIMALPAAMK-VLG--LAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKIL 153 (490)
Q Consensus 77 ~~~~~~~l~~~~iG~GiL~lP~af~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~ 153 (490)
....-+.+.+...|+|=|-.|-... ++| |+++.+-.++.++.--.-+.+- ..+.+. ++.++++++- |+...+
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia---~~~~~~-~~~~l~~~v~-~~f~~i 79 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIA---VAKSGG-GIEDLASRVG-PKFALI 79 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---HhhcCC-CHHHHhcccC-cHHHHH
Confidence 4455667888889999999995544 456 7777776665555332222111 122222 8888877654 444333
Q ss_pred HHHHHHHHHH-H------HHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhh
Q 011265 154 SEICIILNNA-G------VLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMS 226 (490)
Q Consensus 154 ~~~~~~~~~~-g------~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~ 226 (490)
...+.++..- . ..++|=+.+...+. + +..+ ..+...++...+.+.+++ +.-+.+
T Consensus 80 f~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~----------~---~~~~--~~~ifs~iFF~i~~~l~~----~p~kiv 140 (427)
T PF05525_consen 80 FTILIYLSIGPLFAIPRTAAVSFEMGIAPFFP----------E---NSNI--SLLIFSIIFFAITYLLSL----NPSKIV 140 (427)
T ss_pred HHHHHHHHHHhcccCcchhhhhHHHhhhccCC----------c---cccc--chhhhhHHHHHHHHHHHh----chhhHH
Confidence 3333322110 0 11223322222211 0 1111 222223333334444443 334556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCC-CCCCCCCchhhh---hHHhhhhhhhhhhhhhcchHHHHHhcc--c
Q 011265 227 SAASVALAVVFVVVCFFIAFIKLVEG--KLDPPR-MSPDFGSKKAIL---DLLVVIPIMTNAYVCHFNVQPIYNELE--G 298 (490)
Q Consensus 227 s~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~-~~p~~~~~~~~~---~~~~~~~~~~faf~~~~~~~~i~~~m~--~ 298 (490)
..+|.+.+-+.++...+..+...... +..++. .+.+..-..++. +-+.+++.+.|+- .+..-.++.. |
T Consensus 141 d~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~----iIi~~i~~~g~~~ 216 (427)
T PF05525_consen 141 DRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI----IIINAIRQKGYKD 216 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHHHhCCCC
Confidence 66665544444444444333333322 211111 011000001111 1123333333332 2223233322 2
Q ss_pred CCc--cchhHHHHHHHHHHHHHHHHHHhHHHhhcC---CCC-chhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhh
Q 011265 299 RTP--QKMNHVGRLTTILCIVVYSSTAISGYLLFG---KDT-ESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPV 372 (490)
Q Consensus 299 p~~--~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG---~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl 372 (490)
+++ |...++..++...-.++|...+..|...-+ +.. .+.++....+.--. +.=..+..+.+.+..+++--=
T Consensus 217 ~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G---~~G~~ll~iiv~lACLTTaIG 293 (427)
T PF05525_consen 217 KKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFG---SAGQILLGIIVFLACLTTAIG 293 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcC---hhHHHHHHHHHHHHHHHHHHH
Confidence 221 333356666777777888888888777644 222 34455444332100 111233344444554444434
Q ss_pred hhhHHHHHHHHhhccCCCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHh
Q 011265 373 VHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRL 447 (490)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~ 447 (490)
....+.+.+++... + - +.+.++. +..+.++++|. -.++.++++ ....+.++.|..+-+.+
T Consensus 294 L~~a~a~yf~~~~~-k-i----sY~~~v~---i~~i~S~~ian--~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 294 LISACAEYFSELFP-K-I----SYKVWVI---IFTIFSFIIAN--LGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHHHHHHHhc-c-c----ChHHHHH---HHHHHHHHHHH--hCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 44556666776553 1 1 1222222 12223333332 235566655 55778888888876654
No 107
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=58.84 E-value=1.3e+02 Score=26.43 Aligned_cols=67 Identities=4% Similarity=0.038 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhH
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFS 376 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 376 (490)
|+.+|.+....-...++..++|+.....+-+.. .+.+.++-+ +|+-...-.++.++.+..+....+|
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlH------SWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLH------SWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHH------HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477788888888888888888887766665443 232333323 6887778788888888877665544
No 108
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=57.22 E-value=1.2e+02 Score=30.51 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 011265 138 YGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHH 183 (490)
Q Consensus 138 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 183 (490)
...+.+...|+++.+++.+...+..++...+.....++.+.....+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 5677788888999999999999999999999999998888775443
No 109
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=53.75 E-value=1e+02 Score=25.09 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=39.1
Q ss_pred CCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH
Q 011265 72 NEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLA-VGFVLIIFMGILSEVSVELLVRFSVLCKATSY 138 (490)
Q Consensus 72 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y 138 (490)
-++.|.-+.......+.+-.-++++|.++. .||+ .+..++++..++..+-+--+.+-.++.+..+|
T Consensus 18 ~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~y 84 (121)
T PF11990_consen 18 FRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVFVGGKLLARLKRGKPEGY 84 (121)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCchhH
Confidence 346676666666665555557799998888 6765 45555555555554444444443344444444
No 110
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=48.65 E-value=1.3e+02 Score=29.48 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011265 76 GVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR 128 (490)
Q Consensus 76 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~ 128 (490)
-+..++.-.+.-.+|.++--+=.+..+--+ +++-+-+.+|.+.+++..++++
T Consensus 342 d~~TviAC~vaIL~GL~~TL~llsv~~kAL-PALPisI~~G~iFYF~t~~l~e 393 (406)
T KOG2736|consen 342 DLNTVIACFVAILIGLCLTLLLLSVFKKAL-PALPISITFGLIFYFSTRLLVE 393 (406)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cCCchHHHHHHHHHHHHHHHHH
Confidence 366677777777888886322244443332 5666667788888888888877
No 111
>TIGR00909 2A0306 amino acid transporter.
Probab=43.69 E-value=3.5e+02 Score=27.16 Aligned_cols=47 Identities=9% Similarity=-0.054 Sum_probs=38.8
Q ss_pred CCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011265 136 TSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLH 182 (490)
Q Consensus 136 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 182 (490)
....++.++..|+++..+..+...+..++...+.....++.+.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567777888899999999999999999999999988888876443
No 112
>PHA02764 hypothetical protein; Provisional
Probab=42.82 E-value=3.2e+02 Score=26.47 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=51.0
Q ss_pred CCCCchHHHHH-HHHHHhHhhhhchHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCHHHHHHH
Q 011265 72 NEGSGVAGAVF-NLTTTVIGAGIMALPAAMKVL--GLAVGFVLIIFMGILSEVSVELLVRFSVL----CKATSYGEVVQY 144 (490)
Q Consensus 72 ~~~~s~~~~~~-~l~~~~iG~GiL~lP~af~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~----~~~~~y~~l~~~ 144 (490)
-|..|.+.+++ |+.....|.++ +.|+=+... |.. .+..+++.++++...+....|...+ ++...| .++
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY---ISR 85 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY---IRT 85 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE---hHH
Confidence 34677888887 55555555543 556533322 322 3445556666666666666665433 234444 478
Q ss_pred hcCCchhHHHHHHHHHHHH
Q 011265 145 ALGRPAKILSEICIILNNA 163 (490)
Q Consensus 145 ~~G~~~~~~~~~~~~~~~~ 163 (490)
++||+...++.+.......
T Consensus 86 AFGP~~GFLvG~a~WLtl~ 104 (399)
T PHA02764 86 AFSSKFYTIFGISLWLTYV 104 (399)
T ss_pred hhCccHHHHHHHHHHHHHH
Confidence 9999888887777665533
No 113
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=42.41 E-value=50 Score=30.05 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCchhHHHHH---------hhhhhhhhHHHhhhHHHHHHhhcCC-CCCChh--hHHHHHHHHHHHHHHHHH
Q 011265 408 VLIYFGSTMIPSIWTAFKF---------TGATTAVSLGFIFPPLVALRLRKEG-PGLSLG--EKFLSGLMLVLAIVVSFV 475 (490)
Q Consensus 408 ~~~~~ia~~~p~~~~i~~l---------~Ga~~~~~~~~ilP~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~g~~~~v~ 475 (490)
+.++++|..++.++.++.. =||.+|..++++= |+.+.+.. +.-... .+++-|+++++|++..+-
T Consensus 164 ~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr 239 (262)
T KOG4812|consen 164 MWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLR 239 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHHH
Confidence 4445555555555554433 4777777777654 32222222 211222 478889999999999998
Q ss_pred HHHH
Q 011265 476 GVIG 479 (490)
Q Consensus 476 g~~~ 479 (490)
|++.
T Consensus 240 ~~i~ 243 (262)
T KOG4812|consen 240 GFIN 243 (262)
T ss_pred HHHh
Confidence 8875
No 114
>PLN02680 carbon-monoxide oxygenase
Probab=41.75 E-value=2.8e+02 Score=25.45 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhH
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFS 376 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 376 (490)
|+.+|.+....-...++..++|+.....+-++. .+.+-++-+ +|+-...-.++.++.+.++....+|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlH------SWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLH------SWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHH------HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 488888999888888888888986655554432 232222222 6888888888888888887665555
No 115
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=40.82 E-value=1.6e+02 Score=22.37 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=32.1
Q ss_pred hhhhhhhHHHhhhHHHHHH-hhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011265 428 GATTAVSLGFIFPPLVALR-LRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNI 481 (490)
Q Consensus 428 Ga~~~~~~~~ilP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i 481 (490)
|++.+.++..+.-++|-.. ..|.++......|.+....+++|+++.+--...+-
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i~s~ 67 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVIFSM 67 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666555 33444345556777888888888876654444433
No 116
>PHA03048 IMV membrane protein; Provisional
Probab=37.48 E-value=1.8e+02 Score=22.00 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=30.2
Q ss_pred hhhhhhhHHHhhhHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011265 428 GATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIY 482 (490)
Q Consensus 428 Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~ 482 (490)
|++.+.++..+.-++|-..-..+.+......|.++...+++|++..+--...+-+
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgivl~lG~~ifsmy 67 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIVMTIGMLIYSMW 67 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666555322222233556777878888887766544444433
No 117
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=35.39 E-value=2.1e+02 Score=29.44 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 139 GEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 139 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
.+.+++.+|.+. +.+.++..+.++|..-+.+-..+..+..
T Consensus 276 v~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~ 315 (479)
T KOG1287|consen 276 VTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYA 315 (479)
T ss_pred HHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 457788999988 9999999999999777666666665554
No 118
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=34.45 E-value=6.2e+02 Score=27.27 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHhHhhhhch-HHHH-HHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcC
Q 011265 76 GVAGAVFNLTTTVIGAGIMA-LPAA-MKVLG---LAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALG 147 (490)
Q Consensus 76 s~~~~~~~l~~~~iG~GiL~-lP~a-f~~~G---~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G 147 (490)
+..+-.+..++.++|.|=.= .|+. .+++| +++=+++++++++=..+--..+.+...+.+...+..++-..=|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~G 115 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKG 115 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcC
Confidence 78889999999999999655 9954 66666 5555666666666666666667777677666666655555444
No 119
>PHA02898 virion envelope protein; Provisional
Probab=34.29 E-value=2e+02 Score=21.68 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=28.4
Q ss_pred hhhhhhHHHhhhHHHHHH-hhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011265 429 ATTAVSLGFIFPPLVALR-LRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGN 480 (490)
Q Consensus 429 a~~~~~~~~ilP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~ 480 (490)
.+.+.++..+.-++|-.. ..|.+....+..|.+++..+++|++..+--...+
T Consensus 14 vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~lG~~ifs 66 (92)
T PHA02898 14 VVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILILGIIFFK 66 (92)
T ss_pred HHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544 3344433345567777777788877655433333
No 120
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=33.44 E-value=5.5e+02 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 011265 138 YGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHH 183 (490)
Q Consensus 138 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 183 (490)
..++++..+|+++..++.+...+..+++..++....++.+.....+
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard 315 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD 315 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6778889999999999999999999999999999888888775443
No 121
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=33.21 E-value=47 Score=21.61 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011265 304 MNHVGRLTTILCIVVYSSTAISGYLLFGKD 333 (490)
Q Consensus 304 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~ 333 (490)
+..+...+..+.+++..+.|..-|.+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 445566666777777777777777888854
No 122
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=33.10 E-value=75 Score=23.49 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 011265 422 TAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLV 467 (490)
Q Consensus 422 ~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (490)
.+...-+++++. -..++|.++|..+++|=...++.++...+.+..
T Consensus 16 ~vl~~y~~l~~~-YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF 60 (81)
T PF10716_consen 16 LVLLAYAALAGL-YLLVVPLILYFWMNKRWYVMSSFERLFMYFLVF 60 (81)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445554 446789888766544322245567766555443
No 123
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=31.85 E-value=5.3e+02 Score=26.16 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 011265 135 ATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSG 179 (490)
Q Consensus 135 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 179 (490)
...+.++.+..+|+++..++.+...+..++...++....++.+..
T Consensus 259 ~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a 303 (445)
T PRK10644 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKA 303 (445)
T ss_pred CChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999998888888777777777766666666655544
No 124
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=31.84 E-value=2.6e+02 Score=23.85 Aligned_cols=69 Identities=9% Similarity=0.168 Sum_probs=48.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHH
Q 011265 301 PQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSL 377 (490)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 377 (490)
+|+.+|.+....-...++..++|+.....+-+.. +. .|+.+ .++|+-...-+++.++.+..+....+|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fyS-----lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYS-----LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3578888888888888888888887666664432 22 23322 2268888888888889888877776664
No 125
>PLN02810 carbon-monoxide oxygenase
Probab=31.68 E-value=4.1e+02 Score=24.35 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=48.1
Q ss_pred HhcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhh
Q 011265 294 NELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVV 373 (490)
Q Consensus 294 ~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 373 (490)
+..+.++ +.+|.+....=...++..++|+...+.+-+.. .+-+-++- ++|+-...-.++.++-+.++-..
T Consensus 70 r~~~~~k--~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i~nlySL------HSWlGl~tv~Lf~lQw~~Gf~~F 139 (231)
T PLN02810 70 KSLPLKK--EVKKLIHLVLHAIALILGIFGICAAFKNHNES--GIANLYSL------HSWLGIGIISLYGIQWIYGFIVF 139 (231)
T ss_pred hcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCceeeH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 77899998888888888888887666665433 23222222 26887777778888877776554
Q ss_pred hhH
Q 011265 374 HFS 376 (490)
Q Consensus 374 ~~~ 376 (490)
.+|
T Consensus 140 l~P 142 (231)
T PLN02810 140 FFP 142 (231)
T ss_pred hcC
Confidence 444
No 126
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=31.41 E-value=49 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011265 308 GRLTTILCIVVYSSTAISGYLLFGKD 333 (490)
Q Consensus 308 ~~~~~~~~~~~Y~~~g~~gy~~fG~~ 333 (490)
...+..+.+++-.+.|...|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 44556666666677777778888854
No 127
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=30.85 E-value=6e+02 Score=26.05 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=35.2
Q ss_pred CCHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011265 136 TSYGEVVQYALGR-PAKILSEICIILNNAGVLVVYLIIVGDVMSGSLH 182 (490)
Q Consensus 136 ~~y~~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 182 (490)
..+.++.+..+|. .+..++.+...+..++...++....++.+.....
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ar 336 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSR 336 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577787888887 6676777777888888888888888887766443
No 128
>COG4709 Predicted membrane protein [Function unknown]
Probab=30.69 E-value=88 Score=27.45 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHhHhhhhchHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMALPAAMKV-LGLAVGFVLIIFMGILSEVSVELLVRFS 130 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~-~G~~~g~i~l~~~~~~~~~s~~~l~~~~ 130 (490)
+.+..+++.+. +|.|.++.|...-- .|.+.-++.+++.++.-.++.+.+.-..
T Consensus 75 ~~n~~~aii~~----~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~ag 128 (195)
T COG4709 75 QKNVRRAIIAL----IGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVAAG 128 (195)
T ss_pred ccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555543 56777777765431 2333333333333444444555555443
No 129
>CHL00020 psbN photosystem II protein N
Probab=29.19 E-value=43 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011265 307 VGRLTTILCIVVYSSTAISGYLLFGKD 333 (490)
Q Consensus 307 ~~~~~~~~~~~~Y~~~g~~gy~~fG~~ 333 (490)
+...+..+.+++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 345556666666666677777788854
No 130
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=29.13 E-value=2.7e+02 Score=23.61 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=10.0
Q ss_pred hHHHhhhHHHHHHhhc
Q 011265 434 SLGFIFPPLVALRLRK 449 (490)
Q Consensus 434 ~~~~ilP~~~~~~~~~ 449 (490)
.+.-++|+++.++.+-
T Consensus 73 l~~~vlP~~~l~~~~i 88 (156)
T PF08019_consen 73 LLLGVLPALLLWRVRI 88 (156)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444578888777544
No 131
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=28.95 E-value=4.8e+02 Score=24.28 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 011265 352 TALNYIVRVGYIFHLILVFPVVHFSLRQTVD 382 (490)
Q Consensus 352 ~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~ 382 (490)
+.+..-.++...+.+..+.|...+-.-.-+.
T Consensus 76 E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~ 106 (249)
T CHL00182 76 EYFFSSIKISFYTGLLISSPFIIYQIILFIL 106 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999998875444333
No 132
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=28.61 E-value=3.4e+02 Score=26.93 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhcCc-----hhHHHHHhhhhhhhhHH
Q 011265 401 ALTVVLLVLIYFGSTMIPS-----IWTAFKFTGATTAVSLG 436 (490)
Q Consensus 401 ~~~~~~~~~~~~ia~~~p~-----~~~i~~l~Ga~~~~~~~ 436 (490)
....+++....+.+.++|+ +...++..||..-..+.
T Consensus 115 ~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~FILvq 155 (426)
T KOG2592|consen 115 FFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALFILVQ 155 (426)
T ss_pred HHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHHHHHH
Confidence 3466677777888999997 45566666655444333
No 133
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=28.24 E-value=2.1e+02 Score=21.54 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=31.2
Q ss_pred hhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCc
Q 011265 276 IPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTE 335 (490)
Q Consensus 276 ~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~ 335 (490)
.|++..+-.|...+.+..+.-.+|..+.++..-.++++ ..+-+++|++.|..||.-..
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FI--lG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFI--VGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHhcccCC
Confidence 34444445555555666665556663333333333333 33446678999999884343
No 134
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=27.50 E-value=1.7e+02 Score=19.72 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Q 011265 306 HVGRLTTILCIVVYSSTAISGYLLFGKDT 334 (490)
Q Consensus 306 ~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~ 334 (490)
+-+.+=.+++.++|++.|+.-+..+.+..
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 44445567889999999998877766544
No 135
>COG3817 Predicted membrane protein [Function unknown]
Probab=26.60 E-value=3.6e+02 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.208 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011265 457 GEKFLSGLMLVLAIVVSFVGVIGNIYSLES 486 (490)
Q Consensus 457 ~~~~~~~~~~~~g~~~~v~g~~~~i~~ii~ 486 (490)
|.-++-=.+..+|.++...|.-.++..+++
T Consensus 166 wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~ 195 (313)
T COG3817 166 WAAILPQMLAALGAVFASAGVGDVIAHLIS 195 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 344555677788999999998888887764
No 136
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=26.53 E-value=6.2e+02 Score=24.78 Aligned_cols=40 Identities=20% Similarity=0.053 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcC
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTN 341 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~ 341 (490)
+.-++++..+.+.+...-+.+...||.......++++...
T Consensus 44 ~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~ 83 (340)
T PF12794_consen 44 SHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVA 83 (340)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 4566888999999999999999999988754444443333
No 137
>PRK05415 hypothetical protein; Provisional
Probab=25.60 E-value=5.2e+02 Score=25.35 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011265 77 VAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR 128 (490)
Q Consensus 77 ~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~ 128 (490)
.+.+...++...+|.++..+=-+|++.-|+. .....+.+++.......+.+
T Consensus 70 ~~~~l~~l~~~~~~~~~~~i~~~~~~~~wlg-~~~~~~~~~~~~~~~~~~~r 120 (341)
T PRK05415 70 LWGGLGLLGSLVVGQAVQWLRDAFQRSDWLG-LGAAVVGALIVLAGLGIVVR 120 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3445666666677777777888899888764 44444444444444444443
No 138
>PRK11281 hypothetical protein; Provisional
Probab=25.55 E-value=7.2e+02 Score=28.88 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFG 331 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG 331 (490)
..-++++..+.+.+....+.+...||+.+.
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~ 569 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLT 569 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678888888888888888888987765
No 139
>PLN00151 potassium transporter; Provisional
Probab=25.30 E-value=9.7e+02 Score=26.66 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=31.6
Q ss_pred hhhhhhhhhhhhhcchHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcC-CCCchhhhcCCcc
Q 011265 274 VVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFG-KDTESDVLTNFDK 344 (490)
Q Consensus 274 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG-~~~~~~il~~~~~ 344 (490)
..+|-++.|..|...+ +++|-+=. ++--+..+..+...+++-.=+|-..|+.=. +....+.....|+
T Consensus 348 ~~LGgVvLciTGaEAL---fADLGHFg-~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~ 415 (852)
T PLN00151 348 SALGGCVLCATGSEAM---FADLGYFS-VRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPS 415 (852)
T ss_pred EEecceeeeeccchhh---hcccCCCC-ccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCc
Confidence 5567777777766653 55666555 222233344444444433334444454421 2233344444453
No 140
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=7.5e+02 Score=25.30 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHh
Q 011265 308 GRLTTILCIVVYSSTAISGYL 328 (490)
Q Consensus 308 ~~~~~~~~~~~Y~~~g~~gy~ 328 (490)
......++..+.+..|..||.
T Consensus 557 FGYm~~f~~~lgim~Gtigy~ 577 (593)
T KOG1277|consen 557 FGYMAVFCYALGLMCGTIGYV 577 (593)
T ss_pred hHHHHHHHHHHHHHHhhHhhh
Confidence 334456677777778887775
No 141
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=25.07 E-value=7.5e+02 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=31.7
Q ss_pred CCCCCchHHHHHHHHHHhHhhh-hchHHHHHHHhCHHHHHHHH
Q 011265 71 SNEGSGVAGAVFNLTTTVIGAG-IMALPAAMKVLGLAVGFVLI 112 (490)
Q Consensus 71 ~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~g~i~l 112 (490)
++++.|.+|+.+.-+.+.+|+| +-+..-|.+-+| ||.+.+
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG--PGAvFW 99 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG--PGAVFW 99 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC--CccHHH
Confidence 4567899999999999999999 456778888777 444444
No 142
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=24.92 E-value=5.4e+02 Score=29.10 Aligned_cols=8 Identities=13% Similarity=0.160 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 011265 105 LAVGFVLI 112 (490)
Q Consensus 105 ~~~g~i~l 112 (490)
++.+++.+
T Consensus 938 Fi~SIiwI 945 (1096)
T TIGR00927 938 FLGSIMWI 945 (1096)
T ss_pred HHHHHHHH
Confidence 33343333
No 143
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=23.70 E-value=1.6e+02 Score=25.04 Aligned_cols=58 Identities=12% Similarity=-0.071 Sum_probs=34.1
Q ss_pred HHhhhhhhhhHHHhhhHHHHHH-hhcCCC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011265 425 KFTGATTAVSLGFIFPPLVALR-LRKEGP-GLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLE 485 (490)
Q Consensus 425 ~l~Ga~~~~~~~~ilP~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~ii 485 (490)
+..|+..+....|+.|.+.+.- ....++ ..++ ---.+.+++|+..++.|+..+.....
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y 92 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQY 92 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677889999887653 111111 1122 23345568888888888876655443
No 144
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.66 E-value=3.7e+02 Score=22.58 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHH
Q 011265 302 QKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSL 377 (490)
Q Consensus 302 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 377 (490)
|+.+|.+...+-...++..++|+.....+-+... .. |+.+ .++|+-...-+++.++.+.++....+|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~--~~-~~~S-----lHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG--IP-NLYS-----LHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--cc-cccc-----HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4788888888888888888888865555543322 22 2222 2367877787888888887765555553
No 145
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=23.37 E-value=5e+02 Score=27.86 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=39.3
Q ss_pred hHhhhhchHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcC
Q 011265 88 VIGAGIMALPAAM--KVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALG 147 (490)
Q Consensus 88 ~iG~GiL~lP~af--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G 147 (490)
....++..+...+ .+..++..++.+++..+++.-+.+...++.. ++......+.+..+|
T Consensus 366 ~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~~~~~~~sqli~g 426 (624)
T PF03169_consen 366 SFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPVSGLNILSQLIFG 426 (624)
T ss_pred HHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-CcchhhhHHHHHHHH
Confidence 3445666777777 4556766777777777777777777777655 445556666666665
No 146
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.48 E-value=4.1e+02 Score=21.35 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHhHhhhhchHHHHHHHh---C-HHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCCHHHH
Q 011265 76 GVAGAVFNLTTTVIGAGIMALPAAMKVL---G-LAVGFVLIIFMGILS----EVSVELLVRFSVLCKATSYGEV 141 (490)
Q Consensus 76 s~~~~~~~l~~~~iG~GiL~lP~af~~~---G-~~~g~i~l~~~~~~~----~~s~~~l~~~~~~~~~~~y~~l 141 (490)
.|.+....+.-.++|+..+.+...+... | ---++. +++.++++ .|-..++.-+.+..+..+|.++
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~-llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWA-LLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccch-HHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 4666666666666777777666443321 1 111222 22333333 4555555556666667777664
No 147
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=22.08 E-value=9e+02 Score=25.09 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHHhHhhhhch
Q 011265 74 GSGVAGAVFNLTTTVIGAGIMA 95 (490)
Q Consensus 74 ~~s~~~~~~~l~~~~iG~GiL~ 95 (490)
.-|.++-+..+.++-+|+|++-
T Consensus 74 efS~~sW~aMlf~aGig~Givf 95 (485)
T PF02028_consen 74 EFSTFSWFAMLFCAGIGAGIVF 95 (485)
T ss_dssp SS-HHHHHHHHHHHCSSHHHHH
T ss_pred CCCchHHHHHHHHHHhcchhhc
Confidence 3577777778888889999864
No 148
>PRK11021 putative transporter; Provisional
Probab=21.86 E-value=8e+02 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=34.3
Q ss_pred CCHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011265 136 TSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSL 181 (490)
Q Consensus 136 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 181 (490)
....++.+..+|+++..++.+...+..++...++....++.+....
T Consensus 246 ~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~a 291 (410)
T PRK11021 246 ASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQA 291 (410)
T ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888899888888877777878877777777777776544
No 149
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=21.67 E-value=1.3e+02 Score=30.66 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=6.4
Q ss_pred CCCCchHHHHHHH
Q 011265 72 NEGSGVAGAVFNL 84 (490)
Q Consensus 72 ~~~~s~~~~~~~l 84 (490)
+++...-..+||+
T Consensus 355 ~~~~~y~y~~FH~ 367 (429)
T PF03348_consen 355 EDGVSYSYSFFHF 367 (429)
T ss_pred ccCCcccHHHHHH
Confidence 3344444455655
No 150
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.52 E-value=3.4e+02 Score=24.62 Aligned_cols=75 Identities=7% Similarity=0.030 Sum_probs=47.0
Q ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhh
Q 011265 295 ELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVH 374 (490)
Q Consensus 295 ~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 374 (490)
..+.++ |+..|.+....-...++..++|+.....+-+...+.+.+-++.+ +|+-...-+++.++.+.++....
T Consensus 48 ~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlH------SwlGl~t~~L~~lQ~~~Gf~~fl 120 (214)
T cd08764 48 VFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLH------SWLGLTAVILFSLQWVGGFVSFL 120 (214)
T ss_pred cCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433 45567788888777777888886555544444332332223333 68888888888888888876655
Q ss_pred hH
Q 011265 375 FS 376 (490)
Q Consensus 375 ~~ 376 (490)
+|
T Consensus 121 ~P 122 (214)
T cd08764 121 FP 122 (214)
T ss_pred hc
Confidence 55
No 151
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=21.02 E-value=1.2e+02 Score=24.19 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhcCchh-HHHHHhhhhhhhhHHHhhhHHHHHHhhcCCCCCChhhHHHH
Q 011265 401 ALTVVLLVLIYFGSTMIPSIW-TAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLS 462 (490)
Q Consensus 401 ~~~~~~~~~~~~ia~~~p~~~-~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~~~~~~~~~~~ 462 (490)
..+.+.++.+.+.+...|... .-..+. +..+++...+|.++..+.+|+++-.++.++...
T Consensus 36 ~vT~l~VLvtii~afvf~~~~p~p~~if--favcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~ 96 (118)
T PF10856_consen 36 AVTSLFVLVTIISAFVFPQDPPKPLHIF--FAVCILLICISAILLIFWYRQGDLDPKFRYLIY 96 (118)
T ss_pred HHHHHHHHHHHhheEEecCCCCCceEEe--hHHHHHHHHHHHHhheeehhcCCCChhHHHHHH
Confidence 456677777777777777431 111111 112233344667777776677765555555443
No 152
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.32 E-value=3.4e+02 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=6.7
Q ss_pred chhHHHHHHHHHHHH
Q 011265 303 KMNHVGRLTTILCIV 317 (490)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (490)
.....+..+++++..
T Consensus 365 ~~s~~~~~~~~~~~~ 379 (385)
T PF03547_consen 365 EASSIVFWSTLLSIP 379 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
Done!