Query 011266
Match_columns 489
No_of_seqs 229 out of 2797
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.4E-52 2.9E-56 420.9 38.9 434 47-488 8-481 (491)
2 3o7q_A L-fucose-proton symport 100.0 5.8E-33 2E-37 277.7 28.6 366 52-465 27-428 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 3.1E-34 1.1E-38 288.0 16.0 391 51-467 28-431 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.8E-29 6.2E-34 256.3 25.4 390 81-477 49-479 (491)
5 2gfp_A EMRD, multidrug resista 100.0 6.3E-30 2.2E-34 250.4 6.9 356 54-453 3-360 (375)
6 2cfq_A Lactose permease; trans 99.9 5.9E-27 2E-31 232.6 4.2 374 68-478 24-408 (417)
7 2xut_A Proton/peptide symporte 99.9 6.3E-25 2.2E-29 224.7 13.4 151 72-225 33-195 (524)
8 4gc0_A D-xylose-proton symport 99.2 1.2E-11 4.2E-16 124.8 8.4 158 70-231 296-466 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.2 9.1E-11 3.1E-15 116.8 14.5 155 68-225 269-430 (451)
10 3o7q_A L-fucose-proton symport 99.0 5.3E-10 1.8E-14 110.8 9.4 143 70-217 277-421 (438)
11 2cfq_A Lactose permease; trans 99.0 3.3E-10 1.1E-14 111.8 7.4 142 90-232 261-404 (417)
12 4aps_A DI-OR tripeptide H+ sym 98.9 8.5E-09 2.9E-13 103.8 13.3 139 319-466 49-193 (491)
13 2xut_A Proton/peptide symporte 98.9 2E-08 7E-13 102.0 15.2 136 323-466 56-195 (524)
14 2gfp_A EMRD, multidrug resista 98.9 2.7E-09 9.1E-14 103.5 7.9 156 312-476 23-181 (375)
15 2g9p_A Antimicrobial peptide l 51.5 5.9 0.0002 19.8 1.0 14 107-120 2-15 (26)
16 2dw3_A Intrinsic membrane prot 31.9 88 0.003 21.4 4.6 32 446-477 30-61 (77)
17 4dve_A Biotin transporter BIOY 28.7 73 0.0025 26.7 4.9 24 95-118 100-123 (198)
18 2nrg_A Intrinsic membrane prot 21.0 1.8E+02 0.0063 20.1 4.7 34 444-477 29-62 (82)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.4e-52 Score=420.88 Aligned_cols=434 Identities=30% Similarity=0.496 Sum_probs=337.0
Q ss_pred chHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCC------chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHH
Q 011266 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120 (489)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~ 120 (489)
+..+...++++++.+++|||.++++.++|.+.++++.+. ++.+.|++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 333445567788999999999999999999988875421 23446899999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHh------------------hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHH
Q 011266 121 FQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI 182 (489)
Q Consensus 121 ~~~~~~~~~i~~~l~~------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~ 182 (489)
+.++.+++.+++++++ +++|++.++++|+++|+|.|+..+..+.+++|++|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccc-------CCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCC
Q 011266 183 QIATCLGLMGSLLIGIPVKE-------IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGS 255 (489)
Q Consensus 183 ~~~~~~G~~~~~~~~~~~~~-------~~~~wr~~f~~~~~~~~~~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~ 255 (489)
+.+..+|.+.+...+..... ...|||+.+....++.++..+..++.||||+|+..+++.+++++.+++..+++
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999998888777654322 12358999998888888888889999999999999999999999888765433
Q ss_pred chhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHH
Q 011266 256 HVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGI 332 (489)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i 332 (489)
...+...+.++....+ .+....... ...+..........++++.+.+.+.+|.+..++..+.+.. ......++
T Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHG-RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhh-hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence 2222221111110000 000111111 2223344445555666777778888888888887776543 34566778
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC
Q 011266 333 ANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF 412 (489)
Q Consensus 333 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 412 (489)
..++++++++++.||+|||+.+..+...+.++...+....... . .....+...+++...+..+.+|+.+.+.+|++
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--c--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 8899999999999999999998888777776665544332221 1 12233344556667788888999999999999
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011266 413 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL 486 (489)
Q Consensus 413 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~e~~~~~~ 486 (489)
|++.|++++|++..++++++++++.+.+.+.+ ..+....|.+++++++++.++.++++||||||++||+|+.|+
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999887765532 345667888999999999999999999999999999999998
Q ss_pred CC
Q 011266 487 PQ 488 (489)
Q Consensus 487 ~~ 488 (489)
++
T Consensus 480 ~~ 481 (491)
T 4gc0_A 480 PE 481 (491)
T ss_dssp --
T ss_pred CC
Confidence 75
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.8e-33 Score=277.65 Aligned_cols=366 Identities=13% Similarity=0.097 Sum_probs=262.9
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011266 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
....+++..+..+++.+..++.+|.+.+++|.+.+ +.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNF--QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455666677787777888899999999998755 5689999999999999999999999999999999999999999
Q ss_pred HHHH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc-cCCch-
Q 011266 132 ASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGW- 206 (489)
Q Consensus 132 ~~l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~- 206 (489)
.+++ +.+++++.++++|+++|++.|...+....+++|++|+++|++..++++.+..+|..++++++..+. +..+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999 889999999999999999999999999999999999999999999999999999999999988776 55554
Q ss_pred -----------------------hHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 011266 207 -----------------------WRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261 (489)
Q Consensus 207 -----------------------wr~~f~~~~~~~~~~~~~~~~--~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 261 (489)
||+.|++.....++..+..++ .||+++. .+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~-------------------- 240 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHS-------------------- 240 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----CCC--------------------
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----ccc--------------------
Confidence 899997655444444333332 4555320 000
Q ss_pred HHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HHhc-CCCc---chHHHHHHHHHHH
Q 011266 262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSA-GLSS---GLANVFVGIANLL 336 (489)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~i~~~~ 336 (489)
++++.....++++.++++.++......++..... .....+.+.+ .++. +.+. +.......++..+
T Consensus 241 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 241 ------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 0011112234556677677666555444433222 1222333444 4443 5553 4556667788899
Q ss_pred HHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh
Q 011266 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI 416 (489)
Q Consensus 337 g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 416 (489)
+.++.++++||+|||+.+..+.+...++..+..... .. . . +....+...+.+ ...|....+..|.+|++
T Consensus 311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~-~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~- 379 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------GH-V-G-LIALTLCSAFMS-IQYPTIFSLGIKNLGQD- 379 (438)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC------HH-H-H-HHHHHHHHHHHT-THHHHHHHHHHSSCGGG-
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC------Cc-H-H-HHHHHHHHHHHH-HHHHHHHHHHHhhcccc-
Confidence 999999999999999988777666555544332211 11 1 1 111122222222 23456677778999977
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHH
Q 011266 417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 417 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 465 (489)
|+++.++.. .+++++.++|.+.+.+.+..| +...|.+.+++.++..++
T Consensus 380 ~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 889988877 778999999999999999988 888877665555544433
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=3.1e-34 Score=287.95 Aligned_cols=391 Identities=12% Similarity=0.067 Sum_probs=268.8
Q ss_pred HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011266 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (489)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i 130 (489)
......+++.+..+++....++.+|.+.+++ .+.+ +.+++.+.+.+++.++++++|+++||+|||+++..+.+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHh--HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 3455666777777888888888999999998 6654 568999999999999999999999999999999999999999
Q ss_pred HHHHHhh----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch
Q 011266 131 GASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW 206 (489)
Q Consensus 131 ~~~l~~~----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 206 (489)
+.+++++ ++|++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|..++++++..+.+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999 999999999999999999999999999999999999999999999999999999998888765444442
Q ss_pred hHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011266 207 WRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285 (489)
Q Consensus 207 wr~~f~~~~~~~~~~-~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||+.|++.++..++. ++..+++||+|+....+++.+. + +..++..++ +.+++...+....++.++++
T Consensus 185 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 252 (451)
T 1pw4_A 185 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-K---------NDYPDDYNE--KAEQELTAKQIFMQYVLPNK 252 (451)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-C---------CC---------------CCTHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-c---------ccccccchh--hhhcccccccchHHHHHcCH
Confidence 699998876555544 3445678998764211111000 0 000000000 00001111111134555555
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhhH
Q 011266 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFF 359 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~ 359 (489)
.++......++... .......+.+.++++ .+.+. +.......++.+++.++.+++.||+ |||+.+..+..
T Consensus 253 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 328 (451)
T 1pw4_A 253 LLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM 328 (451)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 55544433333222 122333444444444 55553 3556677789999999999999999 99988766554
Q ss_pred HHH-HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHH
Q 011266 360 SMA-VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGL 437 (489)
Q Consensus 360 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~ 437 (489)
... ++..+.. ..+.. ..+......++.+.+. .+..+....+..|.+|++.|+++.|+.+.+.++ ++.+++.
T Consensus 329 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 329 TLVTIATIVYW-----MNPAG-NPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHHHHTT-----SCCTT-CHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----Hhccc-CHHHHHHHHHHHHHHH-hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 443 2222211 11111 1122222222222221 122344456889999999999999999999999 9999999
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011266 438 LFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 438 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
+.+.+.+..|+...|.+.+++++++.+...
T Consensus 402 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 402 IVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888888877776655443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.8e-29 Score=256.26 Aligned_cols=390 Identities=15% Similarity=0.118 Sum_probs=231.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccc
Q 011266 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (489)
Q Consensus 81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~ 159 (489)
+|.+ ..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++++++.+++++++|++.++++|+++|++.|...
T Consensus 49 ~~~s--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHIT--RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 7765 4466899999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh-ccCChH---
Q 011266 160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAESPH--- 233 (489)
Q Consensus 160 ~~~~~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~pEsp~--- 233 (489)
+....+++|++|+++ |+...++++.+..+|..+++.++..+.+..+ ||+.|++.++..++..+...+ .++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 999999999999999 6778888899999999999998887766666 799998865554444333322 122100
Q ss_pred -HHHhcCCHHHHHHHHHH----------------HhCCCchhHHHHH---------HHhhccCCCCcchhHHHhhhccc-
Q 011266 234 -WLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE---------LSKLDRGDDGDIVKFEELLYGRH- 286 (489)
Q Consensus 234 -~l~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~- 286 (489)
....+.+.++.++..++ ..+....++.... .....+....... ....+++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 283 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKV--TSTEHLRVV 283 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CT
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccc--cHHHHHHHH
Confidence 00001122222222222 0000000000000 0000000000000 00011111
Q ss_pred -hhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHH-----HhhHH
Q 011266 287 -FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFS 360 (489)
Q Consensus 287 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-----~~~~~ 360 (489)
.........++...........+.|..+.++......+.......++.+++.++.+++.||+|||+... .+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 111222222222222212222222322222222234566677778888889999999999999986543 44444
Q ss_pred HHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 011266 361 MAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF 439 (489)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 439 (489)
.+++............ ......+..+...++...+.. ...|....+..|.+|++.|++++|+.+...++++.+++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333322211100 011111222222223333222 23566677899999999999999999999999999998876
Q ss_pred HHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011266 440 LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 440 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 477 (489)
+.+. ..+....|.+++++++++.+..+...|+++++.
T Consensus 443 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 443 TLYN-AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp GGGG-GSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 445667777888887777776666777777653
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=6.3e-30 Score=250.37 Aligned_cols=356 Identities=13% Similarity=0.104 Sum_probs=241.9
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011266 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
..+++..++.+++.+...+.+|.+.+++|.+.+ +.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREG--AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTH--HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 345666677777888888899999999887654 568999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011266 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~ 213 (489)
+.++++|++.+++.|+++|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887766555 7999987
Q ss_pred HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011266 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~-~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
..+..++..+ ..++.||+++. ++++ +....++++.++++.++....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV---DAPR------------------------------TRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT---TCCC------------------------------CCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCC---Cccc------------------------------ccHHHHHHHHhcCcchHHHHH
Confidence 6665555444 44567887531 0000 001112344555555554443
Q ss_pred HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHH-HHHHHHHHHHH
Q 011266 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAA 371 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~ 371 (489)
...+............+.+..+.++......+.......++.+++.++.+++.||++++.. .+... ...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~ 284 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPD 284 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 3333222211111111222223223222233555666778888888888899998887322 22211 11111110100
Q ss_pred hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011266 372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL 451 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 451 (489)
... ....+......++..++... ..|....+..|.+| +.|+++.|+.+...+++..+++.+.+.+.+..++...
T Consensus 285 ~~~----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 358 (375)
T 2gfp_A 285 WFG----VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLG 358 (375)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHH
T ss_pred hhc----cccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 000 00112222222333333332 34566678899998 8999999999999999999988887777665554444
Q ss_pred hH
Q 011266 452 YS 453 (489)
Q Consensus 452 ~~ 453 (489)
+.
T Consensus 359 ~~ 360 (375)
T 2gfp_A 359 LL 360 (375)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=5.9e-27 Score=232.62 Aligned_cols=374 Identities=16% Similarity=0.074 Sum_probs=213.0
Q ss_pred eeeccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH---HHhhcchHH-
Q 011266 68 GVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNLI- 142 (489)
Q Consensus 68 ~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~---l~~~~~~~~- 142 (489)
+...+.+|.. .+++|.+.. +.|++.+.+.+++.++++++|+++||+|||+++..+..+++++.. ..+.+....
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKS--DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTT--TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566664 456787654 458999999999999999999999999999999988877654321 112222211
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCc--ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011266 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~--~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 220 (489)
.+..+|.+.|++.|...+.....+.++.++ ++|+...+.......+|..+++.++..+.+. + ||+.|++..++.++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWLGSGCALI 179 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHHHHHHH
Confidence 234566777666555444444444445443 3455555565555566766666666555432 3 79999876555544
Q ss_pred HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011266 221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (489)
Q Consensus 221 ~~~~~~~~pEsp~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
..+..++.+|+|+. +.+.++ .. .++.++.....+++.++++.++............
T Consensus 180 ~~~~~~~~~~~~~~---~~~~~~----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS---SATVAN----------AV-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp HHHHSCSSCCCCSC---SSCSSS----------SS-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccc---cccccc----------cc-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 44444444443210 000000 00 0000111112344556655554433322221111
Q ss_pred hhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011266 301 QLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP 377 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
........+.|....++..+. ..+.......++..++.++.++++||+|||+++..+....++...... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-----~~- 309 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----FA- 309 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-----TC-
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-----Hh-
Confidence 111111112222211110000 113344455677888999999999999999988766655544332221 11
Q ss_pred CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHH
Q 011266 378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFG 456 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 456 (489)
..... + +....+....+. ...+..+.+.+|.+|++.|+++.++. +..+++++.++|.+.+.+.+..|+...|.+++
T Consensus 310 ~~~~~-~-~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 TSALE-V-VILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp CSHHH-H-HHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred ccHHH-H-HHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 11111 1 111111111111 11123356899999999999999995 77788999999998888888777777788888
Q ss_pred HHHHHHHHHHHhhcccCCCCCH
Q 011266 457 TFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 457 ~~~~~~~~~~~~~~pet~~~~~ 478 (489)
++++++.+......||+|..++
T Consensus 387 ~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHhhhcCCCchHH
Confidence 8888887776677888777654
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=6.3e-25 Score=224.67 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=128.2
Q ss_pred cchh-hhhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcc-hHH
Q 011266 72 EPLE-SISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLI 142 (489)
Q Consensus 72 ~~~~-~i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~ 142 (489)
+.++ .+.+++| .+.+ +.+++.+.+.+++.+++++.|+++||+ |||+++..+.++++++.++.++++ +++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGA--VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTT--THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHhccccccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 3444 3456777 6544 568999999999999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCcccchhhhhH---HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011266 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~ 219 (489)
.+++.|++.|++.|...+....++.|++|+++|++..+. +..+..+|..+++.++..+.+..+ ||+.|++..+..+
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~ 189 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMF 189 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887776 888889999999998887766556 7999988766555
Q ss_pred HHHHHh
Q 011266 220 ILCLAM 225 (489)
Q Consensus 220 ~~~~~~ 225 (489)
+..+..
T Consensus 190 ~~~~~~ 195 (524)
T 2xut_A 190 VATVFF 195 (524)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.23 E-value=1.2e-11 Score=124.79 Aligned_cols=158 Identities=18% Similarity=0.106 Sum_probs=98.3
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-----chHHHH
Q 011266 70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGM 144 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~~~~~l 144 (489)
+....+.+.++.+.+... .........+...++.++.+++.||+|||+.++.+.....++.+..+.. .+...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDI--ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHHHHSSCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhcchHHHHhcCCCccc--hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 344456677776654332 2344455566778899999999999999999998888877766655432 222222
Q ss_pred H-HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC------CchhHHHHHHHHHH
Q 011266 145 L-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------AGWWRICFWVSIVP 217 (489)
Q Consensus 145 ~-~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~------~~~wr~~f~~~~~~ 217 (489)
. ..-+..+++.+ ..++...+.+|.+|.+.|+...++......+|..+++.....+.+. .+ +.+.|++.+..
T Consensus 374 ~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~~~~~i~~~~ 451 (491)
T 4gc0_A 374 LSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 2 22222333332 3345668899999999999999998888888766665543222111 11 23445543333
Q ss_pred HHH-HHHHhhhccCC
Q 011266 218 AAI-LCLAMVFCAES 231 (489)
Q Consensus 218 ~~~-~~~~~~~~pEs 231 (489)
.++ .++.++++|||
T Consensus 452 ~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 452 GVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHheecCC
Confidence 333 34456789999
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.22 E-value=9.1e-11 Score=116.83 Aligned_cols=155 Identities=18% Similarity=0.178 Sum_probs=122.8
Q ss_pred eeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc--hhhHHHHHhHHHHH-HHHHHHhhc--chH
Q 011266 68 GVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI-IGASISATT--RNL 141 (489)
Q Consensus 68 ~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~--GRr~~~~~~~~~~~-i~~~l~~~~--~~~ 141 (489)
..+....|.+.++ +|.+ +.+.++..+...++..++.++.|+++||+ |||+.+..+..+.. ++.++..+. .+.
T Consensus 269 ~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFA--LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP 346 (451)
T ss_dssp HHHHHHHHHHBTTBSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCH
T ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCH
Confidence 3345566767666 6765 44567888889999999999999999999 99999988877766 666666665 367
Q ss_pred HHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHH-HHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011266 142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 142 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 220 (489)
+.+.+.-++.|++.+...+....++.|.+|+++||++.++++....+ |..+++.+.+.+.+..+ |+..|++..+..++
T Consensus 347 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~ 425 (451)
T 1pw4_A 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSIL 425 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 77788889999998888888888999999999999999999999999 99888888877766666 68888776555544
Q ss_pred HHHHh
Q 011266 221 LCLAM 225 (489)
Q Consensus 221 ~~~~~ 225 (489)
..+..
T Consensus 426 ~~~~~ 430 (451)
T 1pw4_A 426 AVILL 430 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.02 E-value=5.3e-10 Score=110.83 Aligned_cols=143 Identities=14% Similarity=0.020 Sum_probs=110.3
Q ss_pred eccchhhh-hhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011266 70 VNEPLESI-SLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG 147 (489)
Q Consensus 70 ~~~~~~~i-~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~ 147 (489)
+....|.+ .++. |.+ +.+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++...+...
T Consensus 277 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T 3o7q_A 277 CWSYLIRYAVEEIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL 354 (438)
T ss_dssp HHHHHHHHHHHHSTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHhhhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 34455655 5554 655 4456788888899999999999999999999999999999999998888888887765555
Q ss_pred HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011266 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP 217 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~ 217 (489)
++.|++.+...+....+..|.+|++ |+...++.. ...+|..+++.+.+.+.+..+.++..|++..+.
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8889999988888888889999977 888888776 445777777777666665544346666654333
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.01 E-value=3.3e-10 Score=111.83 Aligned_cols=142 Identities=13% Similarity=-0.008 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011266 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 169 (489)
.++..+...++..++.++.|+++||+|||+++..+.++.+++..+.++.++.+.+++..++.+++.+...+....+++|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777778889999999999999999999988888888877778888888888888888887766666667899999
Q ss_pred CCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhhccCCh
Q 011266 170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAESP 232 (489)
Q Consensus 170 ~p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~pEsp 232 (489)
+|++.||...++ ++....+|..++|.+++.+.+..+ ++..|++..+..++..+. ....||.+
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999998888 477788888888888777665555 577777655544444333 34455543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.91 E-value=8.5e-09 Score=103.83 Aligned_cols=139 Identities=12% Similarity=0.180 Sum_probs=96.3
Q ss_pred cCCCc---chHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011266 319 AGLSS---GLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL 394 (489)
Q Consensus 319 ~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.+.+. ++......++..++.++.|+++|| +|||+++..+.+...++..+.... .+ ..... ...++.++
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~--~~~~l~g~ 120 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FG-ASALF--GSIILIII 120 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CS-TTHHH--HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hh-HHHHH--HHHHHHHH
Confidence 55553 456667778999999999999999 899999988877766665544321 11 11111 11222222
Q ss_pred HHhcCccccccccccccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011266 395 TFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 395 ~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
+.+ ...|....+.+|.+|++. |+++.++.+....++..++|.+...+.+..++.+.|.+.++..+++.+..
T Consensus 121 ~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 121 GTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 221 123456678999999988 77788888889999999999988888888898888888776665555443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.88 E-value=2e-08 Score=101.96 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=93.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcc
Q 011266 323 SGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG 401 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (489)
.++......++..++.+++|+++||+ |||+++..+.+...++..+..... ... +......++.+++.+ ...
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~l~g~~~~-~~~ 127 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-----HSV--QGFYTGLFLIALGSG-GIK 127 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----SCH--HHHHHHHHHHHHHHH-TTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----ccH--HHHHHHHHHHHHhcc-ccc
Confidence 34566777788899999999999999 999998887776666555443221 011 111112222222222 234
Q ss_pred ccccccccccCCchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011266 402 PVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 402 ~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
|....+.+|.+|++.|++..+. .....+++..+++.+...+.+..++.+.|.+.+++.++..+..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 5666789999999999876666 8888888888888887777777888888887777766655444
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.87 E-value=2.7e-09 Score=103.54 Aligned_cols=156 Identities=12% Similarity=0.059 Sum_probs=108.7
Q ss_pred HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011266 312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388 (489)
Q Consensus 312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.+.+.++.+.+. ++......++..++.++.|+++||+|||+.+..+.....++......... .+.....
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~ 94 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--------LTVLIAA 94 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------HHHHHHH
Confidence 344555566554 35566677888899999999999999999998887777776665543321 1111111
Q ss_pred HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011266 389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.++.+.+.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++...|.+.+++.++..+....
T Consensus 95 ~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 95 SAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1234556688999999999999999999999999999988777666667778888777777776665556
Q ss_pred hcccCCCC
Q 011266 469 NVVETKGK 476 (489)
Q Consensus 469 ~~pet~~~ 476 (489)
.+||++.+
T Consensus 174 ~~~~~~~~ 181 (375)
T 2gfp_A 174 WMPETRPV 181 (375)
T ss_dssp SSCCCSTT
T ss_pred HCcccCCC
Confidence 78887654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=51.48 E-value=5.9 Score=19.85 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.4
Q ss_pred hhHhhhhhchhhHH
Q 011266 107 LSGWIADGVGRRRA 120 (489)
Q Consensus 107 ~~g~l~Dr~GRr~~ 120 (489)
++|.|..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999865
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=31.88 E-value=88 Score=21.40 Aligned_cols=32 Identities=9% Similarity=-0.161 Sum_probs=16.8
Q ss_pred hCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011266 446 LGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 477 (489)
.|+...+.+...+.++++-++-..+||..+..
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 33333443333344444455567789977654
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=28.74 E-value=73 Score=26.72 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhHhhhhhchhh
Q 011266 95 SMCLGGAFIGSTLSGWIADGVGRR 118 (489)
Q Consensus 95 s~~~~g~~ig~~~~g~l~Dr~GRr 118 (489)
.-|.+|+.+++.+.|+++||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 358889999999999999997654
No 18
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=21.00 E-value=1.8e+02 Score=20.06 Aligned_cols=34 Identities=9% Similarity=-0.149 Sum_probs=18.4
Q ss_pred HHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011266 444 EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 477 (489)
...|+...+.+...+.++++.++-..+||..+..
T Consensus 29 KGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~a 62 (82)
T 2nrg_A 29 KGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 62 (82)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCC
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 3344444444444444445555567789976654
Done!