Query 011267
Match_columns 489
No_of_seqs 333 out of 3500
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 1.5E-58 3.3E-63 466.6 48.5 391 50-470 2-394 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 1.3E-55 2.8E-60 425.0 37.3 402 51-479 74-477 (478)
3 TIGR02374 nitri_red_nirB nitri 100.0 1.1E-48 2.4E-53 422.8 46.0 377 54-462 1-383 (785)
4 PRK14989 nitrite reductase sub 100.0 1.7E-48 3.8E-53 420.3 46.8 381 51-462 3-394 (847)
5 PRK04965 NADH:flavorubredoxin 100.0 5.7E-48 1.2E-52 387.5 43.4 361 51-446 2-366 (377)
6 COG1251 NirB NAD(P)H-nitrite r 100.0 2.6E-49 5.7E-54 397.6 31.7 382 50-462 2-388 (793)
7 PRK13512 coenzyme A disulfide 100.0 4.1E-45 8.9E-50 373.0 40.8 399 52-481 2-435 (438)
8 PRK09564 coenzyme A disulfide 100.0 5.4E-45 1.2E-49 374.4 39.6 398 53-476 2-433 (444)
9 COG1249 Lpd Pyruvate/2-oxoglut 100.0 6.7E-43 1.5E-47 349.8 35.1 396 49-480 2-454 (454)
10 PRK06370 mercuric reductase; V 100.0 1.8E-41 4E-46 349.2 38.1 403 48-485 2-458 (463)
11 PRK05249 soluble pyridine nucl 100.0 2.2E-41 4.7E-46 349.1 37.8 403 48-485 2-458 (461)
12 COG1252 Ndh NADH dehydrogenase 100.0 5.8E-42 1.2E-46 334.3 28.6 297 50-377 2-329 (405)
13 PLN02507 glutathione reductase 100.0 4.4E-40 9.5E-45 339.7 41.6 396 49-480 23-483 (499)
14 PRK14694 putative mercuric red 100.0 6.2E-41 1.4E-45 345.3 35.2 402 48-485 3-458 (468)
15 PRK06416 dihydrolipoamide dehy 100.0 4.7E-41 1E-45 346.5 34.3 403 50-485 3-457 (462)
16 TIGR01421 gluta_reduc_1 glutat 100.0 1.3E-40 2.8E-45 340.6 36.0 392 51-479 2-449 (450)
17 PRK06467 dihydrolipoamide dehy 100.0 9.9E-41 2.1E-45 343.3 34.9 402 49-486 2-461 (471)
18 PRK06116 glutathione reductase 100.0 2.7E-40 5.8E-45 339.5 37.7 393 50-480 3-450 (450)
19 TIGR01424 gluta_reduc_2 glutat 100.0 2.7E-40 5.7E-45 338.6 36.7 391 51-479 2-445 (446)
20 PRK06115 dihydrolipoamide dehy 100.0 3.5E-40 7.5E-45 339.1 37.5 402 50-486 2-462 (466)
21 PRK08010 pyridine nucleotide-d 100.0 5.8E-40 1.3E-44 336.2 38.1 395 50-481 2-438 (441)
22 PRK05976 dihydrolipoamide dehy 100.0 8E-40 1.7E-44 337.7 37.0 403 50-484 3-466 (472)
23 TIGR02053 MerA mercuric reduct 100.0 9.4E-40 2E-44 336.7 35.7 398 52-485 1-453 (463)
24 KOG1346 Programmed cell death 100.0 1.9E-41 4.1E-46 317.8 20.4 405 50-462 177-646 (659)
25 PTZ00058 glutathione reductase 100.0 2.1E-39 4.5E-44 335.7 37.7 410 48-483 45-560 (561)
26 PRK07818 dihydrolipoamide dehy 100.0 7.9E-40 1.7E-44 337.2 34.2 400 50-486 3-462 (466)
27 PRK12831 putative oxidoreducta 100.0 2.5E-41 5.3E-46 345.9 22.4 334 2-377 79-458 (464)
28 PRK09853 putative selenate red 100.0 3.9E-41 8.4E-46 360.4 24.7 346 2-394 478-856 (1019)
29 PRK07845 flavoprotein disulfid 100.0 1.2E-39 2.6E-44 335.0 34.3 400 51-485 1-461 (466)
30 TIGR01316 gltA glutamate synth 100.0 2.7E-41 5.8E-46 345.2 21.2 332 2-376 67-446 (449)
31 PRK13748 putative mercuric red 100.0 3.6E-39 7.9E-44 340.4 38.1 397 50-485 97-551 (561)
32 PLN02546 glutathione reductase 100.0 5E-40 1.1E-44 340.6 30.9 394 49-480 77-532 (558)
33 PTZ00318 NADH dehydrogenase-li 100.0 1.1E-39 2.5E-44 331.6 30.6 308 49-390 8-358 (424)
34 PRK14727 putative mercuric red 100.0 4.3E-38 9.2E-43 324.7 40.3 399 49-484 14-468 (479)
35 PRK07846 mycothione reductase; 100.0 2.5E-38 5.5E-43 323.5 38.2 393 51-483 1-449 (451)
36 TIGR03385 CoA_CoA_reduc CoA-di 100.0 3.3E-38 7.3E-43 322.2 38.5 371 65-462 1-403 (427)
37 TIGR01423 trypano_reduc trypan 100.0 6.3E-39 1.4E-43 329.0 33.2 394 50-480 2-471 (486)
38 PRK07251 pyridine nucleotide-d 100.0 9.9E-39 2.1E-43 326.8 33.8 393 50-480 2-436 (438)
39 PTZ00153 lipoamide dehydrogena 100.0 8.7E-39 1.9E-43 335.0 33.8 320 135-485 249-655 (659)
40 TIGR01350 lipoamide_DH dihydro 100.0 3.7E-38 8.1E-43 325.2 35.2 401 51-485 1-456 (461)
41 TIGR01438 TGR thioredoxin and 100.0 1.3E-37 2.9E-42 320.1 38.8 396 51-482 2-470 (484)
42 TIGR03452 mycothione_red mycot 100.0 1.3E-37 2.8E-42 318.6 38.4 317 133-483 105-452 (452)
43 PRK06912 acoL dihydrolipoamide 100.0 4.1E-38 8.8E-43 323.5 33.8 397 53-485 2-453 (458)
44 PRK06292 dihydrolipoamide dehy 100.0 4.4E-38 9.5E-43 324.4 33.2 397 49-485 1-455 (460)
45 PRK06327 dihydrolipoamide dehy 100.0 2E-37 4.2E-42 319.7 34.7 401 50-485 3-470 (475)
46 PTZ00052 thioredoxin reductase 100.0 4.1E-37 8.8E-42 317.9 33.0 393 51-480 5-478 (499)
47 PRK12779 putative bifunctional 100.0 3.9E-38 8.5E-43 343.0 26.1 333 2-377 239-624 (944)
48 TIGR03169 Nterm_to_SelD pyridi 100.0 3.5E-37 7.6E-42 308.4 29.9 293 53-377 1-308 (364)
49 PRK11749 dihydropyrimidine deh 100.0 4.7E-38 1E-42 323.0 21.5 332 2-377 79-449 (457)
50 PRK12778 putative bifunctional 100.0 8.7E-38 1.9E-42 338.4 22.4 333 2-377 368-747 (752)
51 TIGR03315 Se_ygfK putative sel 100.0 1.5E-37 3.2E-42 334.7 23.4 327 2-378 476-838 (1012)
52 PRK12810 gltD glutamate syntha 100.0 1.2E-37 2.7E-42 320.4 20.2 337 3-377 84-462 (471)
53 PRK12775 putative trifunctiona 100.0 8.8E-37 1.9E-41 335.4 21.4 333 2-376 370-751 (1006)
54 TIGR01318 gltD_gamma_fam gluta 100.0 1.8E-36 4E-41 310.5 22.1 332 3-377 80-463 (467)
55 PRK12814 putative NADPH-depend 100.0 1.4E-36 3.1E-41 322.7 21.9 333 2-377 133-498 (652)
56 PRK12769 putative oxidoreducta 100.0 5.6E-36 1.2E-40 319.6 23.9 333 2-377 265-649 (654)
57 KOG1335 Dihydrolipoamide dehyd 100.0 5E-35 1.1E-39 272.6 23.9 403 50-485 38-500 (506)
58 TIGR01317 GOGAT_sm_gam glutama 100.0 1.8E-35 3.8E-40 304.4 22.2 336 3-376 84-475 (485)
59 PRK12809 putative oxidoreducta 100.0 1.7E-34 3.8E-39 306.7 22.7 333 2-377 248-632 (639)
60 TIGR01292 TRX_reduct thioredox 100.0 2E-33 4.3E-38 274.0 28.2 284 52-376 1-297 (300)
61 PRK13984 putative oxidoreducta 100.0 2.5E-34 5.5E-39 305.2 23.6 327 3-376 223-598 (604)
62 TIGR03140 AhpF alkyl hydropero 100.0 8.7E-34 1.9E-38 294.8 22.8 269 49-349 210-491 (515)
63 COG0446 HcaD Uncharacterized N 100.0 4.3E-32 9.3E-37 276.6 34.3 324 54-397 1-328 (415)
64 PRK10262 thioredoxin reductase 100.0 6.5E-33 1.4E-37 272.6 22.9 273 49-348 4-292 (321)
65 PRK15317 alkyl hydroperoxide r 100.0 5.3E-32 1.2E-36 281.8 27.0 269 49-349 209-490 (517)
66 PRK12771 putative glutamate sy 100.0 6.3E-33 1.4E-37 291.7 19.5 330 2-376 78-440 (564)
67 KOG0405 Pyridine nucleotide-di 100.0 8.2E-32 1.8E-36 248.2 23.6 392 49-476 18-468 (478)
68 COG0492 TrxB Thioredoxin reduc 100.0 1E-31 2.2E-36 257.0 23.9 268 49-349 1-279 (305)
69 TIGR03143 AhpF_homolog putativ 100.0 2.6E-31 5.7E-36 278.2 28.0 285 50-375 3-304 (555)
70 PRK12770 putative glutamate sy 100.0 2.4E-30 5.3E-35 257.1 23.1 288 49-377 16-347 (352)
71 KOG2495 NADH-dehydrogenase (ub 100.0 4.5E-30 9.6E-35 243.7 20.9 294 48-375 52-392 (491)
72 PRK06567 putative bifunctional 100.0 5E-28 1.1E-32 256.2 19.8 288 1-313 308-733 (1028)
73 PLN02852 ferredoxin-NADP+ redu 100.0 5.8E-27 1.2E-31 237.7 24.1 279 49-351 24-402 (491)
74 TIGR01372 soxA sarcosine oxida 99.9 7.6E-26 1.7E-30 250.7 29.0 280 51-376 163-468 (985)
75 KOG0399 Glutamate synthase [Am 99.9 7.2E-27 1.6E-31 240.9 15.3 334 5-373 1728-2117(2142)
76 KOG4716 Thioredoxin reductase 99.9 9E-26 1.9E-30 207.6 20.8 208 160-388 159-377 (503)
77 COG0493 GltD NADPH-dependent g 99.9 1.2E-26 2.6E-31 233.0 13.7 334 3-376 62-447 (457)
78 COG3634 AhpF Alkyl hydroperoxi 99.9 4.9E-25 1.1E-29 203.4 13.7 271 50-351 210-495 (520)
79 KOG0404 Thioredoxin reductase 99.9 1.1E-23 2.4E-28 183.3 16.4 273 51-346 8-294 (322)
80 PLN02172 flavin-containing mon 99.9 8.5E-23 1.8E-27 208.1 21.8 289 48-379 7-352 (461)
81 KOG2755 Oxidoreductase [Genera 99.9 6.5E-22 1.4E-26 176.3 12.8 268 53-347 1-322 (334)
82 PF07992 Pyr_redox_2: Pyridine 99.8 5.7E-22 1.2E-26 181.4 -0.9 188 53-348 1-200 (201)
83 KOG3851 Sulfide:quinone oxidor 99.8 3.2E-19 6.9E-24 163.5 15.0 296 49-377 37-358 (446)
84 PF00743 FMO-like: Flavin-bind 99.8 4.2E-19 9E-24 183.4 15.5 299 51-378 1-395 (531)
85 PF13738 Pyr_redox_3: Pyridine 99.7 8.9E-17 1.9E-21 147.3 10.4 177 55-241 1-201 (203)
86 COG1148 HdrA Heterodisulfide r 99.7 3E-15 6.5E-20 144.9 20.3 295 49-376 122-545 (622)
87 PF13434 K_oxygenase: L-lysine 99.7 5.4E-16 1.2E-20 152.1 15.5 249 51-307 2-340 (341)
88 COG3486 IucD Lysine/ornithine 99.7 1.8E-14 4E-19 137.7 22.3 292 48-346 2-387 (436)
89 PTZ00188 adrenodoxin reductase 99.7 4E-15 8.8E-20 148.9 18.3 290 48-375 36-439 (506)
90 PRK05329 anaerobic glycerol-3- 99.6 4.6E-15 9.9E-20 148.9 17.8 157 211-376 219-417 (422)
91 COG2072 TrkA Predicted flavopr 99.6 3.4E-15 7.5E-20 151.8 15.8 184 48-242 5-210 (443)
92 KOG1800 Ferredoxin/adrenodoxin 99.6 6.1E-15 1.3E-19 138.9 15.4 156 48-227 17-179 (468)
93 KOG1399 Flavin-containing mono 99.6 2.7E-14 5.8E-19 143.3 16.7 244 48-317 3-278 (448)
94 COG4529 Uncharacterized protei 99.5 1.6E-11 3.4E-16 121.0 25.0 291 51-348 1-437 (474)
95 PF00070 Pyr_redox: Pyridine n 99.5 6.2E-13 1.4E-17 102.0 11.3 80 209-292 1-80 (80)
96 PRK09897 hypothetical protein; 99.2 4.1E-09 8.8E-14 109.1 26.4 170 51-229 1-213 (534)
97 COG2081 Predicted flavoprotein 99.2 9.9E-11 2.1E-15 112.7 8.5 123 49-174 1-167 (408)
98 TIGR03378 glycerol3P_GlpB glyc 99.1 4.3E-09 9.4E-14 104.7 19.7 125 244-375 258-418 (419)
99 COG0029 NadB Aspartate oxidase 99.1 1.7E-10 3.7E-15 113.6 8.3 56 322-378 341-396 (518)
100 COG3075 GlpB Anaerobic glycero 99.1 1.9E-09 4.2E-14 100.3 12.7 106 244-351 253-393 (421)
101 COG0579 Predicted dehydrogenas 99.1 2.9E-09 6.3E-14 105.9 14.8 215 49-320 1-222 (429)
102 PRK08401 L-aspartate oxidase; 98.9 7E-09 1.5E-13 107.1 12.6 56 321-377 309-364 (466)
103 PRK12842 putative succinate de 98.9 1.9E-09 4.1E-14 114.2 7.9 103 205-309 155-276 (574)
104 PRK06175 L-aspartate oxidase; 98.9 2.3E-08 5E-13 102.1 13.6 56 321-377 330-385 (433)
105 PF03486 HI0933_like: HI0933-l 98.9 1.8E-09 4E-14 108.3 4.8 121 52-175 1-167 (409)
106 PRK07804 L-aspartate oxidase; 98.8 4.5E-08 9.8E-13 102.8 14.5 37 49-88 14-50 (541)
107 TIGR00551 nadB L-aspartate oxi 98.8 1.1E-07 2.3E-12 99.0 17.0 55 322-377 333-387 (488)
108 PF14759 Reductase_C: Reductas 98.8 3.3E-08 7.2E-13 76.3 9.6 77 388-472 1-80 (85)
109 PF01266 DAO: FAD dependent ox 98.8 2.8E-08 6.1E-13 98.9 11.5 67 248-318 146-212 (358)
110 COG2081 Predicted flavoprotein 98.8 1.1E-07 2.3E-12 92.1 13.7 111 207-320 3-188 (408)
111 TIGR01176 fum_red_Fp fumarate 98.8 7.2E-08 1.6E-12 101.8 13.5 37 51-88 3-39 (580)
112 PRK09231 fumarate reductase fl 98.8 8.5E-08 1.8E-12 101.5 14.0 38 50-88 3-40 (582)
113 PRK08275 putative oxidoreducta 98.8 1.3E-07 2.8E-12 99.9 14.8 38 50-88 8-45 (554)
114 PRK05945 sdhA succinate dehydr 98.8 5E-08 1.1E-12 103.3 11.7 38 50-88 2-39 (575)
115 PRK11728 hydroxyglutarate oxid 98.8 6.4E-08 1.4E-12 98.0 11.8 66 248-318 148-213 (393)
116 PRK07395 L-aspartate oxidase; 98.7 1.9E-07 4.1E-12 98.1 14.1 54 322-376 347-400 (553)
117 TIGR01292 TRX_reduct thioredox 98.7 2.2E-07 4.8E-12 90.3 13.4 99 209-311 2-115 (300)
118 PRK06452 sdhA succinate dehydr 98.7 2.1E-06 4.5E-11 90.8 21.2 35 50-87 4-38 (566)
119 PRK07843 3-ketosteroid-delta-1 98.7 1.6E-08 3.4E-13 106.6 5.2 108 206-316 159-278 (557)
120 PRK06134 putative FAD-binding 98.7 1.9E-07 4E-12 99.1 13.0 102 206-309 160-279 (581)
121 TIGR01812 sdhA_frdA_Gneg succi 98.7 1.6E-07 3.4E-12 99.7 12.4 33 53-88 1-33 (566)
122 PRK08071 L-aspartate oxidase; 98.7 4.8E-08 1E-12 101.8 7.9 55 322-377 332-386 (510)
123 PRK09077 L-aspartate oxidase; 98.7 4.7E-06 1E-10 87.6 22.9 56 321-377 352-407 (536)
124 PRK06847 hypothetical protein; 98.6 1.2E-07 2.7E-12 95.3 10.2 123 50-175 3-164 (375)
125 PRK06069 sdhA succinate dehydr 98.6 2.3E-07 4.9E-12 98.5 12.2 39 50-88 4-42 (577)
126 PRK13800 putative oxidoreducta 98.6 4.6E-07 1E-11 100.8 14.9 36 50-88 12-47 (897)
127 PRK13977 myosin-cross-reactive 98.6 1.1E-06 2.5E-11 90.4 16.2 88 216-308 191-293 (576)
128 PLN02463 lycopene beta cyclase 98.6 1.5E-07 3.2E-12 96.1 9.5 124 48-175 25-170 (447)
129 PRK12409 D-amino acid dehydrog 98.6 5E-07 1.1E-11 92.1 13.3 64 250-317 198-266 (410)
130 PRK10015 oxidoreductase; Provi 98.6 1.4E-07 3.1E-12 96.2 9.2 123 49-174 3-164 (429)
131 COG0644 FixC Dehydrogenases (f 98.6 2.3E-07 4.9E-12 94.0 10.6 123 49-174 1-152 (396)
132 TIGR01373 soxB sarcosine oxida 98.6 9.7E-07 2.1E-11 89.9 14.9 65 250-317 184-248 (407)
133 TIGR02032 GG-red-SF geranylger 98.6 2.3E-07 5E-12 89.8 9.9 120 52-174 1-148 (295)
134 PRK01747 mnmC bifunctional tRN 98.6 8.9E-07 1.9E-11 95.7 15.0 58 248-309 407-464 (662)
135 PRK06834 hypothetical protein; 98.6 3.3E-07 7.2E-12 95.0 11.2 123 49-175 1-157 (488)
136 PRK10157 putative oxidoreducta 98.6 3E-07 6.5E-12 94.0 10.3 122 49-174 3-164 (428)
137 PLN02815 L-aspartate oxidase 98.5 4.2E-06 9.1E-11 88.5 18.8 54 322-376 377-430 (594)
138 PRK07251 pyridine nucleotide-d 98.5 2.4E-07 5.2E-12 95.2 8.9 98 50-175 156-254 (438)
139 PRK07512 L-aspartate oxidase; 98.5 1.1E-06 2.3E-11 91.9 13.7 55 322-377 341-395 (513)
140 PTZ00383 malate:quinone oxidor 98.5 9.1E-07 2E-11 91.3 12.8 66 250-319 212-283 (497)
141 TIGR02061 aprA adenosine phosp 98.5 3.7E-07 8.1E-12 96.5 10.2 33 53-88 1-37 (614)
142 PRK04176 ribulose-1,5-biphosph 98.5 2.5E-07 5.4E-12 87.4 7.8 121 49-174 23-173 (257)
143 TIGR02734 crtI_fam phytoene de 98.5 1.1E-07 2.3E-12 99.6 5.7 56 249-306 219-274 (502)
144 PRK00711 D-amino acid dehydrog 98.5 1.8E-06 4E-11 88.1 14.6 64 250-317 202-265 (416)
145 TIGR01350 lipoamide_DH dihydro 98.5 3.1E-07 6.7E-12 95.1 8.9 98 51-176 170-271 (461)
146 COG1232 HemY Protoporphyrinoge 98.5 6.5E-07 1.4E-11 90.0 10.8 38 52-90 1-38 (444)
147 PF13454 NAD_binding_9: FAD-NA 98.5 1.4E-06 3E-11 75.9 11.3 34 55-88 1-36 (156)
148 TIGR01377 soxA_mon sarcosine o 98.5 3.1E-06 6.7E-11 85.3 15.3 65 249-318 145-209 (380)
149 PF03486 HI0933_like: HI0933-l 98.5 9.3E-07 2E-11 88.9 11.1 110 209-320 2-187 (409)
150 PRK07190 hypothetical protein; 98.5 6.7E-07 1.4E-11 92.7 10.3 124 48-174 2-165 (487)
151 TIGR00292 thiazole biosynthesi 98.5 4.2E-07 9E-12 85.7 7.9 120 50-174 20-170 (254)
152 PLN02612 phytoene desaturase 98.5 3.8E-06 8.3E-11 88.7 16.0 56 249-305 308-363 (567)
153 PRK07236 hypothetical protein; 98.5 1.1E-06 2.4E-11 88.7 11.4 125 48-175 3-155 (386)
154 PRK06184 hypothetical protein; 98.5 8.7E-07 1.9E-11 92.7 10.8 124 49-175 1-169 (502)
155 PRK07333 2-octaprenyl-6-methox 98.5 6.6E-07 1.4E-11 90.9 9.7 124 51-175 1-168 (403)
156 TIGR02731 phytoene_desat phyto 98.4 2E-06 4.4E-11 88.8 13.2 57 249-306 213-274 (453)
157 TIGR00292 thiazole biosynthesi 98.4 1E-05 2.2E-10 76.3 16.6 139 207-346 21-223 (254)
158 PRK08274 tricarballylate dehyd 98.4 8.4E-06 1.8E-10 84.5 17.3 57 249-307 131-191 (466)
159 PRK08773 2-octaprenyl-3-methyl 98.4 7.7E-07 1.7E-11 90.1 9.4 124 49-175 4-170 (392)
160 COG1233 Phytoene dehydrogenase 98.4 9.7E-07 2.1E-11 91.6 10.2 56 249-306 224-279 (487)
161 PRK04176 ribulose-1,5-biphosph 98.4 7.9E-06 1.7E-10 77.3 15.5 102 207-309 25-174 (257)
162 TIGR01790 carotene-cycl lycope 98.4 6.8E-07 1.5E-11 90.4 8.8 118 53-174 1-141 (388)
163 COG2509 Uncharacterized FAD-de 98.4 1.4E-05 2.9E-10 78.7 17.2 94 226-321 150-246 (486)
164 PF13738 Pyr_redox_3: Pyridine 98.4 1.6E-06 3.5E-11 79.1 10.4 98 211-311 1-143 (203)
165 PRK09754 phenylpropionate diox 98.4 2E-06 4.2E-11 87.2 11.5 99 207-310 3-114 (396)
166 PF00070 Pyr_redox: Pyridine n 98.4 6.7E-07 1.5E-11 68.4 6.0 78 53-158 1-80 (80)
167 TIGR03140 AhpF alkyl hydropero 98.4 3.9E-06 8.6E-11 87.9 13.6 101 206-309 211-324 (515)
168 PF05834 Lycopene_cycl: Lycope 98.4 1.2E-06 2.6E-11 88.0 9.0 120 53-174 1-142 (374)
169 PRK08020 ubiF 2-octaprenyl-3-m 98.4 1.4E-06 3E-11 88.2 9.6 124 49-175 3-170 (391)
170 PRK13339 malate:quinone oxidor 98.4 6.9E-06 1.5E-10 84.6 14.6 67 250-319 185-257 (497)
171 PLN02697 lycopene epsilon cycl 98.4 1E-06 2.2E-11 91.5 8.5 119 50-174 107-248 (529)
172 PRK09126 hypothetical protein; 98.4 2.7E-06 5.8E-11 86.2 11.4 124 49-175 1-168 (392)
173 PRK07494 2-octaprenyl-6-methox 98.4 2.7E-06 5.9E-11 86.0 11.2 39 48-89 4-42 (388)
174 PRK15317 alkyl hydroperoxide r 98.4 5.5E-06 1.2E-10 86.9 13.7 100 207-309 211-323 (517)
175 TIGR03385 CoA_CoA_reduc CoA-di 98.4 1.9E-06 4E-11 88.4 10.0 98 51-175 137-234 (427)
176 PRK07233 hypothetical protein; 98.4 1.6E-06 3.6E-11 88.9 9.7 55 249-306 198-252 (434)
177 PRK06847 hypothetical protein; 98.4 5.8E-06 1.3E-10 83.2 13.4 102 206-310 3-165 (375)
178 PF01134 GIDA: Glucose inhibit 98.3 4.6E-06 9.9E-11 82.4 11.9 95 209-306 1-150 (392)
179 TIGR03329 Phn_aa_oxid putative 98.3 1.9E-06 4.1E-11 89.1 9.7 56 248-308 182-237 (460)
180 PRK05257 malate:quinone oxidor 98.3 1.4E-05 2.9E-10 82.9 15.9 68 249-319 183-256 (494)
181 PRK06481 fumarate reductase fl 98.3 1.8E-05 3.9E-10 82.7 16.9 66 248-315 189-259 (506)
182 PRK09564 coenzyme A disulfide 98.3 3.1E-06 6.8E-11 87.2 11.0 102 208-312 1-119 (444)
183 PRK08849 2-octaprenyl-3-methyl 98.3 4E-06 8.8E-11 84.6 11.2 123 50-175 2-168 (384)
184 TIGR03364 HpnW_proposed FAD de 98.3 7.5E-06 1.6E-10 82.1 12.9 53 249-309 145-198 (365)
185 PLN02172 flavin-containing mon 98.3 3.7E-05 8E-10 79.0 18.1 103 206-311 9-178 (461)
186 PRK08244 hypothetical protein; 98.3 2.9E-06 6.2E-11 88.6 10.0 122 51-175 2-160 (493)
187 TIGR00275 flavoprotein, HI0933 98.3 1.8E-05 3.9E-10 80.1 15.4 94 222-320 78-181 (400)
188 COG3380 Predicted NAD/FAD-depe 98.3 2.1E-06 4.6E-11 78.5 7.5 35 52-89 2-36 (331)
189 PRK07608 ubiquinone biosynthes 98.3 3.7E-06 8E-11 85.0 10.3 37 50-89 4-40 (388)
190 PTZ00318 NADH dehydrogenase-li 98.3 6.5E-06 1.4E-10 84.1 12.2 99 206-310 9-127 (424)
191 PF07992 Pyr_redox_2: Pyridine 98.3 2.2E-06 4.8E-11 78.0 7.9 106 209-315 1-129 (201)
192 TIGR01320 mal_quin_oxido malat 98.3 9.6E-06 2.1E-10 83.9 13.2 69 248-319 177-250 (483)
193 PRK11259 solA N-methyltryptoph 98.3 1.9E-05 4.2E-10 79.4 15.1 61 249-314 149-209 (376)
194 PTZ00363 rab-GDP dissociation 98.3 3E-05 6.6E-10 78.9 16.3 60 249-309 232-291 (443)
195 PRK08013 oxidoreductase; Provi 98.3 4.8E-06 1E-10 84.5 10.3 123 50-175 2-169 (400)
196 PRK05714 2-octaprenyl-3-methyl 98.3 3E-06 6.4E-11 86.3 8.8 45 131-175 123-169 (405)
197 TIGR03169 Nterm_to_SelD pyridi 98.2 6E-06 1.3E-10 82.7 10.7 97 209-311 1-110 (364)
198 TIGR02374 nitri_red_nirB nitri 98.2 5.5E-06 1.2E-10 90.9 10.9 97 210-311 1-111 (785)
199 PRK05868 hypothetical protein; 98.2 5E-06 1.1E-10 83.4 9.8 122 51-175 1-161 (372)
200 PRK04965 NADH:flavorubredoxin 98.2 5.5E-06 1.2E-10 83.4 10.1 99 50-175 140-240 (377)
201 PF00890 FAD_binding_2: FAD bi 98.2 2.4E-06 5.1E-11 87.3 7.3 60 248-309 140-204 (417)
202 PRK07045 putative monooxygenas 98.2 8.7E-06 1.9E-10 82.3 11.3 122 49-174 3-165 (388)
203 PRK06912 acoL dihydrolipoamide 98.2 3.8E-06 8.2E-11 86.8 8.7 97 51-175 170-269 (458)
204 COG0665 DadA Glycine/D-amino a 98.2 2.5E-05 5.4E-10 78.9 14.5 58 248-309 155-213 (387)
205 PRK11883 protoporphyrinogen ox 98.2 6E-05 1.3E-09 77.8 17.3 38 52-90 1-38 (451)
206 PRK08163 salicylate hydroxylas 98.2 4E-06 8.7E-11 85.0 8.4 123 50-175 3-167 (396)
207 KOG2415 Electron transfer flav 98.2 1E-05 2.2E-10 78.1 10.4 59 250-309 184-257 (621)
208 TIGR01813 flavo_cyto_c flavocy 98.2 5E-05 1.1E-09 78.2 16.5 67 248-315 129-200 (439)
209 PRK08850 2-octaprenyl-6-methox 98.2 5.1E-06 1.1E-10 84.5 8.9 42 134-175 126-169 (405)
210 PRK06183 mhpA 3-(3-hydroxyphen 98.2 7.1E-06 1.5E-10 86.6 10.3 37 49-88 8-44 (538)
211 COG1252 Ndh NADH dehydrogenase 98.2 9.7E-06 2.1E-10 80.4 10.4 99 207-311 3-114 (405)
212 PRK11445 putative oxidoreducta 98.2 8.8E-06 1.9E-10 81.0 10.3 121 51-175 1-158 (351)
213 PRK07236 hypothetical protein; 98.2 1.1E-05 2.4E-10 81.5 11.1 101 207-310 6-156 (386)
214 TIGR01789 lycopene_cycl lycope 98.2 6.8E-06 1.5E-10 82.2 9.4 116 53-174 1-138 (370)
215 PRK14694 putative mercuric red 98.2 7.1E-06 1.5E-10 85.0 9.7 96 51-176 178-275 (468)
216 PRK06126 hypothetical protein; 98.2 7E-06 1.5E-10 86.9 9.8 38 48-88 4-41 (545)
217 PRK05732 2-octaprenyl-6-methox 98.2 1.2E-05 2.5E-10 81.6 11.1 43 133-175 126-170 (395)
218 PRK06416 dihydrolipoamide dehy 98.2 4.6E-06 1E-10 86.4 8.3 98 51-176 172-274 (462)
219 PRK11101 glpA sn-glycerol-3-ph 98.2 1.8E-05 3.8E-10 83.5 12.7 67 248-317 148-219 (546)
220 TIGR00562 proto_IX_ox protopor 98.2 2.7E-05 5.8E-10 80.7 13.9 37 51-90 2-42 (462)
221 PRK14989 nitrite reductase sub 98.2 1.1E-05 2.3E-10 88.8 11.2 101 208-313 4-118 (847)
222 PRK05192 tRNA uridine 5-carbox 98.2 3.5E-06 7.5E-11 87.8 6.9 36 49-87 2-37 (618)
223 PRK07588 hypothetical protein; 98.2 1.3E-05 2.8E-10 81.2 11.0 121 52-175 1-159 (391)
224 PRK06753 hypothetical protein; 98.2 1.1E-05 2.4E-10 81.1 10.4 116 53-174 2-152 (373)
225 PRK07364 2-octaprenyl-6-methox 98.2 8E-06 1.7E-10 83.4 9.5 37 50-89 17-53 (415)
226 COG0654 UbiH 2-polyprenyl-6-me 98.2 1.2E-05 2.6E-10 81.2 10.6 121 51-174 2-162 (387)
227 PRK05976 dihydrolipoamide dehy 98.1 7.5E-06 1.6E-10 85.0 9.1 98 51-176 180-283 (472)
228 PRK13512 coenzyme A disulfide 98.1 9.4E-06 2E-10 83.3 9.6 95 51-175 148-242 (438)
229 PRK09078 sdhA succinate dehydr 98.1 6E-05 1.3E-09 80.3 15.9 59 249-308 149-212 (598)
230 TIGR02032 GG-red-SF geranylger 98.1 2.8E-05 6E-10 75.2 12.4 97 209-308 2-148 (295)
231 TIGR01424 gluta_reduc_2 glutat 98.1 9E-06 1.9E-10 83.7 9.3 98 51-176 166-265 (446)
232 PRK12416 protoporphyrinogen ox 98.1 3.7E-05 7.9E-10 79.7 13.8 40 51-90 1-43 (463)
233 PF12831 FAD_oxidored: FAD dep 98.1 1.4E-06 2.9E-11 89.1 3.0 117 53-172 1-148 (428)
234 PRK06116 glutathione reductase 98.1 9.9E-06 2.1E-10 83.6 9.4 98 51-176 167-267 (450)
235 TIGR01988 Ubi-OHases Ubiquinon 98.1 7.8E-06 1.7E-10 82.5 8.5 120 53-175 1-164 (385)
236 PRK06185 hypothetical protein; 98.1 1.5E-05 3.3E-10 81.1 10.5 37 49-88 4-40 (407)
237 PRK07846 mycothione reductase; 98.1 1E-05 2.2E-10 83.3 9.1 96 51-175 166-263 (451)
238 TIGR01984 UbiH 2-polyprenyl-6- 98.1 1.4E-05 3E-10 80.6 9.7 119 53-174 1-162 (382)
239 PRK05249 soluble pyridine nucl 98.1 1.1E-05 2.3E-10 83.6 9.1 99 50-176 174-274 (461)
240 PRK09853 putative selenate red 98.1 2E-05 4.3E-10 86.7 11.2 91 206-309 538-636 (1019)
241 TIGR02732 zeta_caro_desat caro 98.1 2.4E-05 5.2E-10 81.0 11.4 59 248-307 218-283 (474)
242 PRK07121 hypothetical protein; 98.1 0.00011 2.3E-09 76.8 16.3 60 248-308 176-239 (492)
243 PTZ00139 Succinate dehydrogena 98.1 0.00013 2.8E-09 78.0 17.1 59 248-307 165-228 (617)
244 PRK12770 putative glutamate sy 98.1 1.1E-05 2.3E-10 80.5 8.4 103 205-309 16-132 (352)
245 PRK08132 FAD-dependent oxidore 98.1 1.5E-05 3.3E-10 84.3 10.0 37 49-88 21-57 (547)
246 PF01134 GIDA: Glucose inhibit 98.1 3.8E-06 8.3E-11 82.9 5.0 39 133-172 109-150 (392)
247 PLN02487 zeta-carotene desatur 98.1 3.5E-05 7.7E-10 80.8 12.3 60 247-307 293-359 (569)
248 PRK07045 putative monooxygenas 98.1 5.3E-05 1.2E-09 76.6 13.4 101 208-309 6-166 (388)
249 PRK08205 sdhA succinate dehydr 98.1 0.00015 3.2E-09 77.2 17.2 60 248-308 139-206 (583)
250 PLN02463 lycopene beta cyclase 98.1 4.4E-05 9.5E-10 78.1 12.8 98 208-309 29-170 (447)
251 COG1249 Lpd Pyruvate/2-oxoglut 98.1 2.2E-05 4.7E-10 79.9 10.2 99 49-175 171-273 (454)
252 PRK06370 mercuric reductase; V 98.1 1.5E-05 3.2E-10 82.6 9.3 98 51-176 171-273 (463)
253 PRK07818 dihydrolipoamide dehy 98.1 1.5E-05 3.2E-10 82.6 9.2 98 51-176 172-275 (466)
254 PRK06834 hypothetical protein; 98.0 5.4E-05 1.2E-09 78.7 13.1 108 208-320 4-166 (488)
255 TIGR01989 COQ6 Ubiquinone bios 98.0 1.3E-05 2.8E-10 82.4 8.3 42 134-175 134-184 (437)
256 PLN02661 Putative thiazole syn 98.0 1.4E-05 3.1E-10 77.7 8.0 38 50-89 91-128 (357)
257 PRK06996 hypothetical protein; 98.0 1.4E-05 3.1E-10 81.0 8.4 41 47-87 7-48 (398)
258 PRK11749 dihydropyrimidine deh 98.0 1.5E-05 3.2E-10 82.4 8.6 90 206-307 139-236 (457)
259 TIGR01421 gluta_reduc_1 glutat 98.0 2E-05 4.3E-10 81.2 9.5 98 51-176 166-267 (450)
260 TIGR02053 MerA mercuric reduct 98.0 1.5E-05 3.3E-10 82.6 8.6 98 51-176 166-268 (463)
261 PRK07845 flavoprotein disulfid 98.0 1.7E-05 3.7E-10 82.1 8.9 98 51-176 177-276 (466)
262 TIGR02023 BchP-ChlP geranylger 98.0 1.3E-05 2.8E-10 81.1 7.8 32 52-86 1-32 (388)
263 PRK06327 dihydrolipoamide dehy 98.0 1.7E-05 3.7E-10 82.3 8.8 98 51-176 183-286 (475)
264 PRK10262 thioredoxin reductase 98.0 8.6E-05 1.9E-09 73.0 13.4 100 206-310 5-119 (321)
265 COG0492 TrxB Thioredoxin reduc 98.0 0.00029 6.2E-09 68.1 16.5 97 208-309 4-116 (305)
266 PRK12779 putative bifunctional 98.0 1.9E-05 4.1E-10 87.8 9.4 93 206-309 305-406 (944)
267 PRK12839 hypothetical protein; 98.0 0.00013 2.8E-09 77.2 15.1 61 248-309 213-277 (572)
268 PLN02576 protoporphyrinogen ox 98.0 9.7E-05 2.1E-09 77.3 14.1 39 49-90 10-49 (496)
269 KOG2820 FAD-dependent oxidored 98.0 1.8E-05 4E-10 74.6 7.6 65 248-314 152-217 (399)
270 PRK08773 2-octaprenyl-3-methyl 98.0 6.9E-05 1.5E-09 75.9 12.5 109 206-319 5-178 (392)
271 PLN02464 glycerol-3-phosphate 98.0 0.00011 2.5E-09 78.4 14.5 67 248-316 231-303 (627)
272 PLN02507 glutathione reductase 98.0 2.2E-05 4.8E-10 81.8 8.9 98 51-176 203-302 (499)
273 COG0446 HcaD Uncharacterized N 98.0 2E-05 4.4E-10 80.1 8.5 98 51-175 136-238 (415)
274 COG0654 UbiH 2-polyprenyl-6-me 98.0 8.4E-05 1.8E-09 75.1 12.7 100 207-309 2-163 (387)
275 PRK08243 4-hydroxybenzoate 3-m 98.0 2.5E-05 5.4E-10 79.1 8.9 35 51-88 2-36 (392)
276 PRK07057 sdhA succinate dehydr 98.0 0.00047 1E-08 73.4 18.8 60 248-308 147-211 (591)
277 TIGR03219 salicylate_mono sali 98.0 5.8E-05 1.3E-09 77.0 11.6 42 134-175 117-160 (414)
278 COG0578 GlpA Glycerol-3-phosph 98.0 3.7E-05 8E-10 78.6 9.8 65 248-316 163-232 (532)
279 PTZ00052 thioredoxin reductase 98.0 2.9E-05 6.4E-10 80.9 9.4 97 51-176 182-280 (499)
280 TIGR02028 ChlP geranylgeranyl 98.0 3.4E-05 7.4E-10 78.1 9.5 34 52-88 1-34 (398)
281 PRK08244 hypothetical protein; 98.0 9E-05 1.9E-09 77.5 12.9 101 208-309 3-160 (493)
282 PRK10157 putative oxidoreducta 98.0 8.8E-05 1.9E-09 75.9 12.5 107 208-319 6-173 (428)
283 TIGR03452 mycothione_red mycot 97.9 3.2E-05 6.9E-10 79.7 9.3 97 51-176 169-267 (452)
284 PRK08958 sdhA succinate dehydr 97.9 0.00027 5.9E-09 75.1 16.5 60 248-308 142-206 (588)
285 TIGR03143 AhpF_homolog putativ 97.9 0.0001 2.2E-09 77.9 13.2 97 208-310 5-116 (555)
286 PRK07333 2-octaprenyl-6-methox 97.9 0.0001 2.2E-09 75.0 12.8 106 209-319 3-176 (403)
287 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 2.3E-05 5E-10 79.2 8.0 35 51-88 2-36 (390)
288 PRK08163 salicylate hydroxylas 97.9 0.0001 2.2E-09 74.8 12.7 101 206-309 3-167 (396)
289 PRK13748 putative mercuric red 97.9 3.1E-05 6.7E-10 82.3 9.3 96 51-176 270-367 (561)
290 KOG2665 Predicted FAD-dependen 97.9 5E-05 1.1E-09 71.0 9.2 68 252-321 199-269 (453)
291 PLN00128 Succinate dehydrogena 97.9 0.00028 6.1E-09 75.5 16.2 60 248-308 186-250 (635)
292 PF13450 NAD_binding_8: NAD(P) 97.9 1.4E-05 3E-10 58.8 4.4 32 56-90 1-32 (68)
293 PRK06115 dihydrolipoamide dehy 97.9 3.4E-05 7.3E-10 79.9 9.0 98 50-175 173-277 (466)
294 PRK06263 sdhA succinate dehydr 97.9 0.00032 6.9E-09 74.1 16.4 59 248-307 133-196 (543)
295 PRK01438 murD UDP-N-acetylmura 97.9 5.1E-05 1.1E-09 79.0 10.2 88 206-320 15-105 (480)
296 PRK07588 hypothetical protein; 97.9 0.0001 2.3E-09 74.5 12.3 98 209-310 2-160 (391)
297 PF04820 Trp_halogenase: Trypt 97.9 0.00012 2.5E-09 75.3 12.5 58 250-309 155-212 (454)
298 PRK06617 2-octaprenyl-6-methox 97.9 2.6E-05 5.7E-10 78.4 7.7 34 51-87 1-34 (374)
299 TIGR01316 gltA glutamate synth 97.9 3.4E-05 7.5E-10 79.4 8.4 92 206-309 132-232 (449)
300 PRK07190 hypothetical protein; 97.9 0.00021 4.5E-09 74.3 14.2 108 208-320 6-175 (487)
301 PRK08010 pyridine nucleotide-d 97.9 3.9E-05 8.4E-10 79.0 8.8 98 50-176 157-256 (441)
302 TIGR01438 TGR thioredoxin and 97.9 4.5E-05 9.7E-10 79.2 9.2 97 51-176 180-281 (484)
303 PRK14727 putative mercuric red 97.9 4.6E-05 1E-09 79.2 9.1 96 51-176 188-285 (479)
304 PRK05192 tRNA uridine 5-carbox 97.9 0.00015 3.3E-09 75.8 12.6 96 208-306 5-155 (618)
305 TIGR01423 trypano_reduc trypan 97.9 5E-05 1.1E-09 78.8 9.0 102 50-176 186-290 (486)
306 PRK05868 hypothetical protein; 97.9 0.00017 3.6E-09 72.5 12.4 100 208-310 2-162 (372)
307 TIGR01318 gltD_gamma_fam gluta 97.9 3.9E-05 8.5E-10 79.3 8.0 92 206-309 140-239 (467)
308 PLN02697 lycopene epsilon cycl 97.8 0.00017 3.7E-09 75.1 12.6 98 208-308 109-248 (529)
309 PRK05714 2-octaprenyl-3-methyl 97.8 0.00017 3.6E-09 73.4 12.4 99 208-309 3-169 (405)
310 PRK12831 putative oxidoreducta 97.8 4.4E-05 9.5E-10 78.8 8.0 93 206-309 139-242 (464)
311 PRK12843 putative FAD-binding 97.8 0.00021 4.5E-09 76.0 13.3 66 248-315 220-290 (578)
312 PRK06475 salicylate hydroxylas 97.8 6.8E-05 1.5E-09 76.2 9.2 34 52-88 3-36 (400)
313 PRK12845 3-ketosteroid-delta-1 97.8 0.00026 5.7E-09 74.7 13.8 60 248-309 216-279 (564)
314 COG1635 THI4 Ribulose 1,5-bisp 97.8 1.7E-05 3.7E-10 70.5 4.1 37 50-89 29-65 (262)
315 PF01946 Thi4: Thi4 family; PD 97.8 1.5E-05 3.2E-10 71.3 3.7 37 50-89 16-52 (230)
316 PRK06184 hypothetical protein; 97.8 0.00025 5.5E-09 74.2 13.5 98 208-308 4-168 (502)
317 PLN00093 geranylgeranyl diphos 97.8 3E-05 6.5E-10 79.6 6.4 39 47-88 35-73 (450)
318 PRK09126 hypothetical protein; 97.8 0.0002 4.4E-09 72.4 12.2 100 208-310 4-169 (392)
319 PRK06292 dihydrolipoamide dehy 97.8 6.6E-05 1.4E-09 77.7 8.7 98 50-176 168-270 (460)
320 TIGR01984 UbiH 2-polyprenyl-6- 97.8 0.00021 4.5E-09 72.1 12.0 105 209-318 1-170 (382)
321 TIGR00136 gidA glucose-inhibit 97.8 0.00033 7.2E-09 73.1 13.6 98 209-308 2-154 (617)
322 PLN02852 ferredoxin-NADP+ redu 97.8 6.9E-05 1.5E-09 77.1 8.4 92 206-309 25-127 (491)
323 PTZ00058 glutathione reductase 97.8 8.4E-05 1.8E-09 78.1 9.2 97 51-175 237-337 (561)
324 PF01494 FAD_binding_3: FAD bi 97.8 0.00019 4E-09 71.3 11.4 100 209-309 3-173 (356)
325 TIGR01988 Ubi-OHases Ubiquinon 97.8 0.00025 5.5E-09 71.5 12.3 98 209-309 1-164 (385)
326 PF12831 FAD_oxidored: FAD dep 97.8 2.5E-05 5.4E-10 79.9 4.8 107 209-320 1-159 (428)
327 PRK07573 sdhA succinate dehydr 97.8 0.00015 3.3E-09 77.7 11.0 35 50-87 34-68 (640)
328 TIGR01317 GOGAT_sm_gam glutama 97.8 6.4E-05 1.4E-09 78.1 7.8 90 206-307 142-239 (485)
329 PRK06753 hypothetical protein; 97.8 0.00021 4.5E-09 71.9 11.3 98 209-309 2-153 (373)
330 PRK07364 2-octaprenyl-6-methox 97.8 0.00027 5.8E-09 72.1 12.3 101 207-310 18-183 (415)
331 KOG1336 Monodehydroascorbate/f 97.8 7.1E-05 1.5E-09 74.2 7.4 99 51-176 213-315 (478)
332 PRK08013 oxidoreductase; Provi 97.7 0.00028 6.1E-09 71.6 12.0 99 208-309 4-169 (400)
333 TIGR00136 gidA glucose-inhibit 97.7 8.6E-05 1.9E-09 77.4 8.3 34 52-88 1-34 (617)
334 COG0644 FixC Dehydrogenases (f 97.7 0.00031 6.6E-09 71.2 12.2 108 208-319 4-161 (396)
335 TIGR01790 carotene-cycl lycope 97.7 0.00032 7E-09 70.9 12.3 97 209-308 1-141 (388)
336 PRK08020 ubiF 2-octaprenyl-3-m 97.7 0.00035 7.5E-09 70.7 12.6 100 207-309 5-170 (391)
337 TIGR03315 Se_ygfK putative sel 97.7 0.00013 2.8E-09 80.8 9.8 90 207-309 537-634 (1012)
338 PRK12778 putative bifunctional 97.7 8.7E-05 1.9E-09 81.5 8.5 93 206-309 430-531 (752)
339 PRK08849 2-octaprenyl-3-methyl 97.7 0.00032 6.9E-09 70.8 12.0 100 208-310 4-169 (384)
340 KOG0029 Amine oxidase [Seconda 97.7 4.4E-05 9.5E-10 78.7 5.4 41 47-90 11-51 (501)
341 PRK07538 hypothetical protein; 97.7 0.00011 2.5E-09 74.9 8.5 34 52-88 1-34 (413)
342 PRK06467 dihydrolipoamide dehy 97.7 0.0001 2.2E-09 76.5 8.2 97 51-176 174-276 (471)
343 PF00743 FMO-like: Flavin-bind 97.7 0.00042 9E-09 72.4 12.7 136 207-343 1-191 (531)
344 PTZ00188 adrenodoxin reductase 97.7 0.00021 4.5E-09 72.7 9.9 92 206-309 38-139 (506)
345 COG1635 THI4 Ribulose 1,5-bisp 97.7 0.00048 1.1E-08 61.5 10.9 138 207-346 30-229 (262)
346 PRK06185 hypothetical protein; 97.7 0.0006 1.3E-08 69.4 13.3 110 207-320 6-179 (407)
347 PRK08850 2-octaprenyl-6-methox 97.7 0.0004 8.6E-09 70.7 12.0 108 207-319 4-177 (405)
348 PRK08132 FAD-dependent oxidore 97.7 0.0005 1.1E-08 72.8 13.1 102 207-309 23-186 (547)
349 PLN02785 Protein HOTHEAD 97.7 0.00088 1.9E-08 71.0 14.7 61 257-318 228-300 (587)
350 PLN02661 Putative thiazole syn 97.7 0.0011 2.3E-08 64.8 13.8 100 207-308 92-244 (357)
351 PRK06183 mhpA 3-(3-hydroxyphen 97.7 0.00051 1.1E-08 72.6 12.8 100 207-309 10-175 (538)
352 PRK12809 putative oxidoreducta 97.6 0.00012 2.6E-09 78.7 7.9 92 206-309 309-408 (639)
353 PRK10015 oxidoreductase; Provi 97.6 0.0005 1.1E-08 70.4 12.0 106 208-318 6-172 (429)
354 PRK06617 2-octaprenyl-6-methox 97.6 0.00049 1.1E-08 69.2 11.6 98 209-310 3-162 (374)
355 PRK05732 2-octaprenyl-6-methox 97.6 0.00065 1.4E-08 68.8 12.6 107 208-319 4-178 (395)
356 PRK12810 gltD glutamate syntha 97.6 0.00017 3.6E-09 74.9 8.2 91 206-308 142-240 (471)
357 PRK08294 phenol 2-monooxygenas 97.6 0.0003 6.4E-09 75.5 10.2 37 49-88 30-67 (634)
358 COG2072 TrkA Predicted flavopr 97.6 0.0035 7.6E-08 64.3 17.6 100 206-306 7-142 (443)
359 KOG1399 Flavin-containing mono 97.6 0.0014 3.1E-08 66.5 14.5 135 206-342 5-193 (448)
360 PLN02546 glutathione reductase 97.6 0.00019 4.2E-09 75.4 8.5 99 50-176 251-352 (558)
361 PF06039 Mqo: Malate:quinone o 97.6 0.00025 5.3E-09 70.6 8.6 85 250-336 182-274 (488)
362 PRK07494 2-octaprenyl-6-methox 97.6 0.00067 1.5E-08 68.5 12.1 107 207-319 7-176 (388)
363 PF01494 FAD_binding_3: FAD bi 97.6 5.6E-05 1.2E-09 75.0 4.1 35 52-89 2-36 (356)
364 PRK12775 putative trifunctiona 97.6 0.0002 4.3E-09 80.5 8.8 92 207-309 430-531 (1006)
365 PRK06475 salicylate hydroxylas 97.6 0.001 2.2E-08 67.6 13.1 99 208-309 3-168 (400)
366 TIGR03219 salicylate_mono sali 97.6 0.00044 9.6E-09 70.5 10.5 98 209-309 2-160 (414)
367 PRK07608 ubiquinone biosynthes 97.6 0.00082 1.8E-08 67.9 12.3 106 208-319 6-176 (388)
368 PTZ00153 lipoamide dehydrogena 97.6 0.0002 4.3E-09 76.5 8.0 98 51-176 312-429 (659)
369 PRK12814 putative NADPH-depend 97.5 0.00019 4.1E-09 77.3 7.8 92 206-309 192-291 (652)
370 COG0493 GltD NADPH-dependent g 97.5 0.00033 7.1E-09 71.4 9.1 89 206-307 122-219 (457)
371 COG2907 Predicted NAD/FAD-bind 97.5 0.0019 4E-08 61.7 13.3 40 49-92 6-45 (447)
372 TIGR01789 lycopene_cycl lycope 97.5 0.00047 1E-08 69.1 10.0 94 209-309 1-139 (370)
373 PTZ00306 NADH-dependent fumara 97.5 0.0026 5.7E-08 73.0 17.2 37 50-89 408-444 (1167)
374 PRK07208 hypothetical protein; 97.5 0.00011 2.3E-09 76.6 5.6 57 249-306 218-278 (479)
375 TIGR01372 soxA sarcosine oxida 97.5 0.001 2.2E-08 75.1 13.4 101 207-310 163-288 (985)
376 PF13454 NAD_binding_9: FAD-NA 97.5 0.0013 2.8E-08 57.2 11.3 43 262-306 113-155 (156)
377 PRK09897 hypothetical protein; 97.5 0.0014 3E-08 68.4 13.3 99 208-309 2-167 (534)
378 PRK12769 putative oxidoreducta 97.5 0.00021 4.6E-09 77.1 7.6 91 206-308 326-424 (654)
379 PF01946 Thi4: Thi4 family; PD 97.5 0.0013 2.9E-08 59.0 10.7 103 207-310 17-167 (230)
380 KOG2853 Possible oxidoreductas 97.5 0.0011 2.5E-08 62.8 10.7 59 50-108 85-144 (509)
381 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0016 3.5E-08 65.9 13.0 101 208-310 3-165 (392)
382 PRK06126 hypothetical protein; 97.4 0.0016 3.4E-08 69.0 13.1 100 207-309 7-189 (545)
383 PRK01438 murD UDP-N-acetylmura 97.4 0.00064 1.4E-08 70.8 9.8 134 50-236 15-154 (480)
384 PF05834 Lycopene_cycl: Lycope 97.4 0.0014 3.1E-08 65.8 12.0 96 210-309 2-143 (374)
385 KOG4254 Phytoene desaturase [C 97.4 0.00043 9.4E-09 68.0 7.8 56 249-306 264-319 (561)
386 KOG0404 Thioredoxin reductase 97.4 0.0011 2.4E-08 59.2 9.2 99 206-309 7-125 (322)
387 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00021 4.5E-09 71.9 5.3 34 209-242 2-35 (433)
388 TIGR01989 COQ6 Ubiquinone bios 97.4 0.0017 3.7E-08 66.7 12.2 101 209-310 2-185 (437)
389 KOG2844 Dimethylglycine dehydr 97.4 0.00065 1.4E-08 69.8 8.3 72 232-309 173-244 (856)
390 PRK06996 hypothetical protein; 97.3 0.0019 4.1E-08 65.6 11.7 99 206-307 10-173 (398)
391 PLN02268 probable polyamine ox 97.3 0.00023 4.9E-09 73.2 5.1 37 52-91 1-37 (435)
392 COG0445 GidA Flavin-dependent 97.3 0.0002 4.3E-09 72.3 4.3 119 50-173 3-157 (621)
393 TIGR02360 pbenz_hydroxyl 4-hyd 97.3 0.0023 5E-08 64.7 12.2 100 208-309 3-164 (390)
394 KOG2404 Fumarate reductase, fl 97.3 0.0024 5.1E-08 60.3 10.9 83 230-316 122-216 (477)
395 PRK12771 putative glutamate sy 97.3 0.00058 1.3E-08 72.5 8.0 92 205-309 135-235 (564)
396 PRK07538 hypothetical protein; 97.3 0.0021 4.6E-08 65.6 11.8 98 209-309 2-166 (413)
397 PRK13984 putative oxidoreducta 97.3 0.00062 1.3E-08 73.0 7.8 91 206-308 282-380 (604)
398 PLN02568 polyamine oxidase 97.3 0.00033 7.2E-09 73.4 5.6 43 48-90 2-46 (539)
399 PLN02985 squalene monooxygenas 97.3 0.00036 7.8E-09 72.9 5.6 38 48-88 40-77 (514)
400 TIGR00031 UDP-GALP_mutase UDP- 97.3 0.00035 7.5E-09 69.6 5.2 37 51-90 1-37 (377)
401 PRK07804 L-aspartate oxidase; 97.3 0.0031 6.7E-08 66.5 12.6 99 207-306 16-208 (541)
402 COG0445 GidA Flavin-dependent 97.3 0.00078 1.7E-08 68.1 7.5 96 208-305 5-155 (621)
403 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00035 7.6E-09 69.9 5.0 35 51-88 2-36 (436)
404 KOG0685 Flavin-containing amin 97.2 0.00039 8.5E-09 69.0 5.2 39 50-90 20-58 (498)
405 COG3349 Uncharacterized conser 97.2 0.00037 8E-09 70.3 4.8 36 52-90 1-36 (485)
406 TIGR02023 BchP-ChlP geranylger 97.2 0.0044 9.5E-08 62.7 12.6 96 209-308 2-155 (388)
407 PRK08401 L-aspartate oxidase; 97.2 0.0045 9.7E-08 64.2 12.7 98 208-309 2-176 (466)
408 TIGR02028 ChlP geranylgeranyl 97.2 0.0049 1.1E-07 62.5 12.7 99 209-309 2-161 (398)
409 PLN02529 lysine-specific histo 97.2 0.00049 1.1E-08 74.1 5.5 40 48-90 157-196 (738)
410 KOG0399 Glutamate synthase [Am 97.2 0.00094 2E-08 72.2 7.4 91 206-308 1784-1882(2142)
411 PRK12266 glpD glycerol-3-phosp 97.2 0.00048 1E-08 72.0 5.3 62 249-314 155-221 (508)
412 PRK11445 putative oxidoreducta 97.1 0.0066 1.4E-07 60.5 12.9 96 209-309 3-158 (351)
413 PRK13369 glycerol-3-phosphate 97.1 0.00054 1.2E-08 71.6 5.4 63 248-314 154-220 (502)
414 TIGR02733 desat_CrtD C-3',4' d 97.1 0.00054 1.2E-08 71.6 5.2 56 249-306 232-292 (492)
415 PF14721 AIF_C: Apoptosis-indu 97.1 0.0017 3.8E-08 52.2 6.5 33 423-456 99-131 (133)
416 TIGR02485 CobZ_N-term precorri 97.1 0.0048 1E-07 63.3 11.8 64 251-315 125-191 (432)
417 PTZ00367 squalene epoxidase; P 97.1 0.00056 1.2E-08 72.0 5.0 36 49-87 31-66 (567)
418 TIGR01812 sdhA_frdA_Gneg succi 97.1 0.0066 1.4E-07 64.6 12.8 52 255-308 135-191 (566)
419 PRK08641 sdhA succinate dehydr 97.1 0.00064 1.4E-08 72.4 5.0 37 49-88 1-37 (589)
420 PLN02927 antheraxanthin epoxid 97.0 0.00069 1.5E-08 72.1 5.0 35 50-87 80-114 (668)
421 TIGR01811 sdhA_Bsu succinate d 97.0 0.0074 1.6E-07 64.4 12.5 45 262-307 146-195 (603)
422 TIGR02730 carot_isom carotene 97.0 0.00091 2E-08 69.9 5.2 57 249-307 229-285 (493)
423 COG1251 NirB NAD(P)H-nitrite r 97.0 0.004 8.6E-08 65.3 9.6 127 207-346 3-143 (793)
424 KOG1276 Protoporphyrinogen oxi 96.9 0.0014 3.1E-08 64.1 5.8 40 50-90 10-49 (491)
425 PLN00093 geranylgeranyl diphos 96.9 0.01 2.3E-07 61.0 12.5 108 207-318 39-207 (450)
426 PRK08275 putative oxidoreducta 96.9 0.011 2.4E-07 62.6 13.0 57 251-308 139-200 (554)
427 PLN02676 polyamine oxidase 96.9 0.0014 3E-08 68.2 5.8 41 48-90 23-63 (487)
428 PLN02985 squalene monooxygenas 96.9 0.011 2.4E-07 61.8 12.6 100 207-309 43-209 (514)
429 TIGR02485 CobZ_N-term precorri 96.9 0.0032 6.8E-08 64.7 8.3 30 56-88 1-30 (432)
430 PF00732 GMC_oxred_N: GMC oxid 96.9 0.00081 1.8E-08 65.2 3.8 67 251-318 195-268 (296)
431 KOG2495 NADH-dehydrogenase (ub 96.9 0.0069 1.5E-07 59.5 9.7 101 206-310 54-172 (491)
432 PRK06452 sdhA succinate dehydr 96.9 0.011 2.3E-07 62.9 12.1 53 252-306 139-196 (566)
433 PRK07573 sdhA succinate dehydr 96.9 0.011 2.4E-07 63.6 12.3 51 255-307 176-231 (640)
434 PRK06175 L-aspartate oxidase; 96.9 0.012 2.5E-07 60.4 12.0 56 251-308 130-189 (433)
435 COG1231 Monoamine oxidase [Ami 96.8 0.0014 3E-08 65.1 5.0 39 49-90 5-43 (450)
436 PRK13369 glycerol-3-phosphate 96.8 0.0098 2.1E-07 62.3 11.6 33 208-240 7-39 (502)
437 PRK06567 putative bifunctional 96.8 0.0019 4.1E-08 70.8 6.4 34 206-239 382-415 (1028)
438 TIGR00551 nadB L-aspartate oxi 96.8 0.01 2.2E-07 61.8 11.7 58 250-309 129-190 (488)
439 KOG2311 NAD/FAD-utilizing prot 96.8 0.0047 1E-07 61.3 8.2 33 207-239 28-60 (679)
440 PRK12837 3-ketosteroid-delta-1 96.8 0.0017 3.7E-08 68.1 5.3 37 50-90 6-42 (513)
441 PRK08626 fumarate reductase fl 96.8 0.0015 3.2E-08 70.4 4.8 37 49-88 3-39 (657)
442 COG3634 AhpF Alkyl hydroperoxi 96.8 0.0042 9.1E-08 59.2 7.1 101 206-307 210-324 (520)
443 PLN02927 antheraxanthin epoxid 96.8 0.012 2.7E-07 62.7 11.5 36 205-240 79-114 (668)
444 PRK07803 sdhA succinate dehydr 96.7 0.0015 3.3E-08 70.0 4.8 36 50-88 7-42 (626)
445 COG1148 HdrA Heterodisulfide r 96.7 0.0041 8.9E-08 61.9 7.1 70 207-277 124-205 (622)
446 PF04820 Trp_halogenase: Trypt 96.7 0.0016 3.5E-08 67.0 4.7 37 53-89 1-37 (454)
447 COG0562 Glf UDP-galactopyranos 96.7 0.0022 4.8E-08 60.6 5.1 38 51-91 1-38 (374)
448 PRK12266 glpD glycerol-3-phosp 96.7 0.015 3.2E-07 61.0 11.9 34 207-240 6-39 (508)
449 PRK06854 adenylylsulfate reduc 96.7 0.019 4.1E-07 61.5 12.9 98 208-307 12-194 (608)
450 COG3380 Predicted NAD/FAD-depe 96.7 0.0042 9.1E-08 57.4 6.6 31 209-239 3-33 (331)
451 PRK12834 putative FAD-binding 96.7 0.0019 4E-08 68.4 5.1 35 50-87 3-37 (549)
452 PLN02328 lysine-specific histo 96.7 0.0023 5E-08 69.5 5.7 39 49-90 236-274 (808)
453 TIGR00137 gid_trmFO tRNA:m(5)U 96.7 0.0019 4.1E-08 65.1 4.8 34 52-88 1-34 (433)
454 PRK08294 phenol 2-monooxygenas 96.7 0.022 4.7E-07 61.3 12.8 103 206-309 31-211 (634)
455 PRK05945 sdhA succinate dehydr 96.7 0.019 4.2E-07 61.1 12.3 56 251-308 137-197 (575)
456 PRK06854 adenylylsulfate reduc 96.6 0.0019 4.1E-08 69.0 4.4 35 51-88 11-47 (608)
457 PRK12835 3-ketosteroid-delta-1 96.6 0.0026 5.5E-08 67.7 5.1 67 248-315 212-283 (584)
458 KOG1335 Dihydrolipoamide dehyd 96.6 0.0037 8E-08 60.4 5.5 98 50-175 210-315 (506)
459 KOG2614 Kynurenine 3-monooxyge 96.6 0.0029 6.2E-08 62.1 4.8 35 51-88 2-36 (420)
460 PRK12835 3-ketosteroid-delta-1 96.6 0.027 5.9E-07 60.0 12.6 34 207-240 11-44 (584)
461 PRK12844 3-ketosteroid-delta-1 96.5 0.0032 6.9E-08 66.6 5.1 60 248-309 207-270 (557)
462 PRK07803 sdhA succinate dehydr 96.5 0.032 6.9E-07 60.0 12.7 32 208-239 9-40 (626)
463 PRK02106 choline dehydrogenase 96.4 0.0038 8.2E-08 66.3 5.3 65 254-320 206-274 (560)
464 PRK08255 salicylyl-CoA 5-hydro 96.4 0.003 6.6E-08 69.4 4.6 35 53-88 2-36 (765)
465 PRK06069 sdhA succinate dehydr 96.4 0.032 7E-07 59.5 12.3 51 255-307 143-199 (577)
466 PRK08641 sdhA succinate dehydr 96.4 0.031 6.7E-07 59.6 12.0 32 208-239 4-35 (589)
467 PF13450 NAD_binding_8: NAD(P) 96.4 0.0055 1.2E-07 44.9 4.4 33 212-244 1-33 (68)
468 COG4529 Uncharacterized protei 96.4 0.047 1E-06 55.0 12.1 101 208-310 2-166 (474)
469 PRK07395 L-aspartate oxidase; 96.4 0.02 4.4E-07 60.5 10.2 56 251-307 136-196 (553)
470 PF06100 Strep_67kDa_ant: Stre 96.4 0.042 9E-07 55.7 11.6 86 218-308 174-274 (500)
471 COG1053 SdhA Succinate dehydro 96.3 0.0048 1E-07 64.8 4.8 38 48-88 3-40 (562)
472 PRK08071 L-aspartate oxidase; 96.2 0.028 6.2E-07 58.9 10.5 52 254-308 135-190 (510)
473 PRK08255 salicylyl-CoA 5-hydro 96.2 0.011 2.5E-07 65.0 7.7 33 209-241 2-36 (765)
474 PLN02815 L-aspartate oxidase 96.2 0.037 8.1E-07 58.9 11.1 31 208-239 30-60 (594)
475 PRK08626 fumarate reductase fl 96.2 0.054 1.2E-06 58.5 12.5 50 255-306 164-218 (657)
476 PLN03000 amine oxidase 96.1 0.0076 1.6E-07 65.7 5.6 39 49-90 182-220 (881)
477 PRK07512 L-aspartate oxidase; 96.0 0.042 9.1E-07 57.7 10.3 56 251-308 138-197 (513)
478 TIGR01176 fum_red_Fp fumarate 96.0 0.072 1.6E-06 56.7 12.2 52 254-307 137-194 (580)
479 PRK14106 murD UDP-N-acetylmura 96.0 0.027 5.9E-07 58.1 8.8 82 206-313 4-85 (450)
480 COG3573 Predicted oxidoreducta 96.0 0.01 2.2E-07 56.4 4.9 38 49-89 3-40 (552)
481 TIGR02462 pyranose_ox pyranose 96.0 0.0077 1.7E-07 62.9 4.6 60 259-319 224-290 (544)
482 TIGR02061 aprA adenosine phosp 96.0 0.1 2.2E-06 55.7 13.1 48 260-308 137-191 (614)
483 PRK09231 fumarate reductase fl 96.0 0.075 1.6E-06 56.7 12.0 49 256-306 140-194 (582)
484 PF14691 Fer4_20: Dihydroprymi 95.9 0.00023 5.1E-09 57.4 -5.5 42 2-43 61-105 (111)
485 TIGR01811 sdhA_Bsu succinate d 95.8 0.0079 1.7E-07 64.2 4.0 31 54-87 1-31 (603)
486 KOG1298 Squalene monooxygenase 95.8 0.013 2.8E-07 56.9 4.7 38 48-88 42-79 (509)
487 KOG1346 Programmed cell death 95.7 0.015 3.2E-07 56.9 5.0 104 49-176 345-451 (659)
488 KOG2614 Kynurenine 3-monooxyge 95.7 0.05 1.1E-06 53.6 8.6 33 207-239 2-34 (420)
489 PRK09077 L-aspartate oxidase; 95.7 0.13 2.8E-06 54.3 12.5 54 254-308 143-207 (536)
490 KOG2755 Oxidoreductase [Genera 95.6 0.021 4.5E-07 52.6 5.2 91 209-309 1-105 (334)
491 KOG2852 Possible oxidoreductas 95.6 0.038 8.2E-07 51.6 6.9 34 206-239 9-48 (380)
492 PLN02976 amine oxidase 95.6 0.018 3.8E-07 65.5 5.4 39 49-90 691-729 (1713)
493 KOG2960 Protein involved in th 95.5 0.0034 7.4E-08 55.6 -0.2 37 51-88 76-112 (328)
494 PRK12834 putative FAD-binding 95.4 0.18 4E-06 53.4 12.6 33 208-240 5-37 (549)
495 PRK05335 tRNA (uracil-5-)-meth 95.4 0.019 4.2E-07 57.7 4.9 35 208-242 3-37 (436)
496 COG0029 NadB Aspartate oxidase 95.4 0.07 1.5E-06 53.8 8.6 30 209-239 9-38 (518)
497 PRK12837 3-ketosteroid-delta-1 95.4 0.16 3.5E-06 53.3 11.9 53 262-316 187-244 (513)
498 PRK12844 3-ketosteroid-delta-1 95.3 0.23 5E-06 52.7 12.6 33 207-239 6-38 (557)
499 TIGR01810 betA choline dehydro 95.2 0.016 3.6E-07 61.1 3.9 65 253-319 198-266 (532)
500 PF02852 Pyr_redox_dim: Pyridi 95.2 0.043 9.3E-07 44.5 5.5 56 425-480 50-110 (110)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.5e-58 Score=466.65 Aligned_cols=391 Identities=27% Similarity=0.428 Sum_probs=337.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|||||||+||++||.+|++.++ +.+|+||+++++.||.+|++++.++........ .....+|
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~ 67 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW 67 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence 45689999999999999999999987 789999999999999999998866543221111 1234678
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+.+.+++++.++.|..+|++.+.+.+.+|.++.||+||||||+.|..+| .++...++++++++..++.++.+.+..+++
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~ 146 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS 146 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence 8899999999989999999999999999999999999999999987544 344446778999999999999888888899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
++|||+|++|+|+|..|+++|.+|+++++.++++++.+++...+.+.+.+++.||++++ ++.++++.. ++. ..+.+
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~V~~i~~--~~~-~~v~l 222 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL-NNAIEHVVD--GEK-VELTL 222 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe-CCeeEEEEc--CCE-EEEEE
Confidence 99999999999999999999999999999999998778999999999999999999999 999999974 233 35778
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
.+|++++||.||+++|.+|++.+++.+|++.+ ++|.||+++||+.|||||+|||+..+.. .|...+.++|..|..||+
T Consensus 223 ~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~ 300 (396)
T PRK09754 223 QSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQ 300 (396)
T ss_pred CCCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHH
Confidence 89999999999999999999989888998875 6799999999999999999999987765 677777889999999999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCc-EEEEccCC-CcEEEEEEECCEEEEEEeccCCHHH
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-TIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEE 447 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (489)
.+|.||++. ..+|..+||||+++|+.. ++++|....+ .+..++.+ .++..+|+++|+|+|+++ +|++++
T Consensus 301 ~aa~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~ 371 (396)
T PRK09754 301 IAAAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGRE 371 (396)
T ss_pred HHHHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHH
Confidence 999999964 567889999999999876 8899975443 44566544 457778888999999996 899999
Q ss_pred hHHHHHHHhcCCCCChhhhcCCC
Q 011267 448 FQLLPTLARSQPFVDKAKLQQAS 470 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+..++++++.+.++++..+.++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~ 394 (396)
T PRK09754 372 IRPIRKWIQSGKTFDAKLLIDEN 394 (396)
T ss_pred HHHHHHHHHCCCCCCHHHhcCcc
Confidence 99999999999999988887763
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=1.3e-55 Score=425.02 Aligned_cols=402 Identities=45% Similarity=0.755 Sum_probs=363.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|++|..|+.++++.++ ..+++++.++.++||.|+.|++.++..... ...+..+||
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~---------------~a~r~~e~Y 137 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVGEG---------------LAKRTPEFY 137 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeecccc---------------ccccChhhH
Confidence 6789999999999999999999997 789999999999999999999855433222 135678899
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcE
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (489)
++.+|++++++.|+++|...+++.+.+|+.+.|++|+||||+.+.. ++.+|.+.+++.++++.++++.+...+....++
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v 216 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV 216 (478)
T ss_pred hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence 9999999999999999999999999999999999999999998875 556888899999999999999998888888999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+++|+|++|+|+|..|...+.+||+|++.+.++++.+.+.+.+.+.++++++||+++. ++.+.+++..++|++..|.+.
T Consensus 217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~-~t~~s~l~~~~~Gev~~V~l~ 295 (478)
T KOG1336|consen 217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYL-GTVVSSLEGNSDGEVSEVKLK 295 (478)
T ss_pred EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEE-ecceeecccCCCCcEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999 999999998888999999999
Q ss_pred CCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
+|++++||+||+++|.+|++.+++. +..++ .|+|.||+++||++|||||+||++.++.+.++...+++|++.|+..|+
T Consensus 296 dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 296 DGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred cCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 9999999999999999999999998 66665 688999999999999999999999999999988888999999999999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCcEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHHh
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 448 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 448 (489)
.+...+.......+++.||||+..|+.. |+++|...++.+..|+.+ .+|..||++ ++.+++.+..+..+..
T Consensus 375 ~av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~ 446 (478)
T KOG1336|consen 375 QAVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEV 446 (478)
T ss_pred hhhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHH
Confidence 8776665433334789999999999875 899999888888888876 568999999 8889988878888889
Q ss_pred HHHHHHHhcCCCCChhhhcCCCcHHHHHHHH
Q 011267 449 QLLPTLARSQPFVDKAKLQQASSVEEALEIA 479 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 479 (489)
..+..++++++.+..-++.+..+.+.+++..
T Consensus 447 ~~~a~l~~~~~~v~~~~~~~~~~~~~~~~~~ 477 (478)
T KOG1336|consen 447 SQFAKLARQGPEVTSLKLLSKSGDSFWLTIL 477 (478)
T ss_pred HHHHHHHhcCCcchhhhhccccchhhHHhhc
Confidence 9999999999999988888888888887653
No 3
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.1e-48 Score=422.82 Aligned_cols=377 Identities=21% Similarity=0.357 Sum_probs=312.4
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHC
Q 011267 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (489)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (489)
|||||||+||++||.+|++.+..+.+||||+++++++|.++.++. ++... .....+ .....+|+++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~ 67 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH 67 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence 699999999999999999986446799999999999999998876 44321 111122 23467899999
Q ss_pred CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEE
Q 011267 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVi 213 (489)
+++++++++|+.||++++.|.+.+|.++.||+||||||+.|+ .|.++|.+.++++.++++++++.+++....+++++||
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV 146 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI 146 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999999999987 4667887788999999999999998888888999999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc
Q 011267 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS 293 (489)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~ 293 (489)
|+|++|+|+|..|+++|.+|+++++.++++++.+++.....+.+.+++.||++++ ++.++++.. ++.+..|.+++|+
T Consensus 147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~-~~~v~~i~~--~~~~~~v~~~dG~ 223 (785)
T TIGR02374 147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL-EKDTVEIVG--ATKADRIRFKDGS 223 (785)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEe-CCceEEEEc--CCceEEEEECCCC
Confidence 9999999999999999999999999999998889999999999999999999999 999999973 3456678899999
Q ss_pred EEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 011267 294 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 373 (489)
Q Consensus 294 ~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~ 373 (489)
++++|.||+++|.+|++++++.+|++.+ ++|.||++|||++|+|||+|||+..+...++ .+..|..||+.+|.
T Consensus 224 ~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~ 296 (785)
T TIGR02374 224 SLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLAD 296 (785)
T ss_pred EEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 7899999999999999999999987665433 56778999999999
Q ss_pred HHhcCCCCCCCcCCceee-ecccccCCCcceeeeeecCCcC-----cEEEEccCCCcEEEEEEECCEEEEEEeccCCHHH
Q 011267 374 ALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE 447 (489)
Q Consensus 374 ~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (489)
||++....+|...+.... +.+++. +.++|.... .+.........|.++++++++|+|+++ +++..+
T Consensus 297 ni~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~ 368 (785)
T TIGR02374 297 HICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSD 368 (785)
T ss_pred HhcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHH
Confidence 999754355655443221 233322 344554321 122222223558899999999999997 788899
Q ss_pred hHHHHHHHhcCCCCC
Q 011267 448 FQLLPTLARSQPFVD 462 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~ 462 (489)
...+.+++.++..+.
T Consensus 369 ~~~L~~li~~~~~l~ 383 (785)
T TIGR02374 369 YGRLLDMVLKQADIS 383 (785)
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998776554
No 4
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=1.7e-48 Score=420.31 Aligned_cols=381 Identities=19% Similarity=0.331 Sum_probs=308.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++|||||+|+||+.+|.+|++.+. ++.+||||+++++++|.++.++. ++... ....+ .....+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~-~~~~~--~~~~l-----------~~~~~~~ 68 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSS-YFSHH--TAEEL-----------SLVREGF 68 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchH-hHcCC--CHHHc-----------cCCCHHH
Confidence 4589999999999999999988642 35689999999999999998876 33221 11112 2345788
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+++.+++++.+++|+.+|++.+.|.+.+|.++.||+||||||++|+ .|+++|.+.++++.+++.+++.+++.....+++
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~ 147 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR 147 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence 9999999999989999999999999999999999999999999987 466778777889999999999999888888899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
++|||+|++|+|+|..|.++|.+|+++++.++++++.+++..++.+.+.++++||++++ ++.++++..++++....+.+
T Consensus 148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~-~~~v~~I~~~~~~~~~~v~~ 226 (847)
T PRK14989 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHT-SKNTLEIVQEGVEARKTMRF 226 (847)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEc-CCeEEEEEecCCCceEEEEE
Confidence 99999999999999999999999999999999998889999999999999999999999 99999997543345567888
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
++|+++++|.||+|+|++|++++++.+|++.+ +|+|.||++|||++|+|||+|||+......++ .+..|..+|
T Consensus 227 ~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a 300 (847)
T PRK14989 227 ADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMA 300 (847)
T ss_pred CCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHH
Confidence 99999999999999999999999999999876 57899999999999999999999987655433 566799999
Q ss_pred HHHHHHHhcCCCCCCCcCCce-eeecccccCCCcceeeeeecCCcCc------EEEEccCCCcEEEEEEE--CCEEEEEE
Q 011267 369 QHCIKALLSAQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVL 439 (489)
Q Consensus 369 ~~~a~~l~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~--~~~~~g~~ 439 (489)
+.+|.||++.. ..|...... -.+.+++. +..+|...+. ..........|.++.++ +++|+|++
T Consensus 301 ~vaa~~i~g~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~ 372 (847)
T PRK14989 301 QVAVDHLLGSE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAV 372 (847)
T ss_pred HHHHHHhcCCC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEE
Confidence 99999998643 444432221 11223221 3445533221 22233333557787775 46999999
Q ss_pred eccCCHHHhHHHHHHHhcCCCCC
Q 011267 440 VESGSPEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~ 462 (489)
+ +|+..+...+..++.++..++
T Consensus 373 l-vGd~~~~~~l~~~~~~~~~l~ 394 (847)
T PRK14989 373 L-VGDTSDYGNLLQLVLNAIELP 394 (847)
T ss_pred E-ECCHHHHHHHHHHHHcCCCCc
Confidence 7 788888888888887776654
No 5
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=5.7e-48 Score=387.54 Aligned_cols=361 Identities=23% Similarity=0.355 Sum_probs=288.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
+++|||||||+||+++|++|++.+. +.+|+||+++++.+|++|.+++.+. . ...+..+. .....+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~ 68 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA 68 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence 3589999999999999999999875 7899999999999999998876332 1 22221110 11245678
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcE
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (489)
++++++++.+++|+.+|++.+.+.+ ++.++.||+||+|||+.|. .|.++|... ++.++++.++..+...+..++++
T Consensus 69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence 8899999998899999999888886 5678999999999999986 455566432 77888888888888877788999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+|||+|++|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.++++..++ +. ..+.+.
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~-~~~v~~i~~~~-~~-~~v~~~ 221 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL-KSQLQGLEKTD-SG-IRATLD 221 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEE-CCeEEEEEccC-CE-EEEEEc
Confidence 9999999999999999999999999999999998878999999999999999999999 99999998532 22 357788
Q ss_pred CCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHH
Q 011267 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 370 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 370 (489)
+|++++||.||+|+|.+|++++++.+|++.++ ++.||+++||+.|||||+|||+..+... ...|..|..||+.
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~ 294 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMA 294 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHH
Confidence 99999999999999999999999999998874 6999999999999999999999865432 2356778999999
Q ss_pred HHHHHhcCCCCCCCcCCceee-ecccccCCCcceeeeeecCCcC---cEEEEccCCCcEEEEEEECCEEEEEEeccCCHH
Q 011267 371 CIKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPE 446 (489)
Q Consensus 371 ~a~~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 446 (489)
+|+||++. ...|...+..++ +.++++ +.++|...+ .+....+.++.+.++++++|+|+|++++.+...
T Consensus 295 ~a~n~~g~-~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~ 366 (377)
T PRK04965 295 LAKNLLGQ-NTPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMK 366 (377)
T ss_pred HHHHhcCC-CcccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHH
Confidence 99999964 355665444322 344433 667777543 222222223557888899999999998544343
No 6
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=2.6e-49 Score=397.57 Aligned_cols=382 Identities=23% Similarity=0.379 Sum_probs=326.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
.+.++||||.|+||..+..++++......+||++..+++.+|+|..|+. ++.+ .....++ .....+|
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~-~~~~edi-----------~l~~~dw 68 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAG-EKTAEDI-----------SLNRNDW 68 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCC-CccHHHH-----------hccchhh
Confidence 4578999999999999999999965556699999999999999999987 4433 2222222 2456799
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
|++++++++.+.+|+.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.+++.+|...+....+..++
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~ 147 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKK 147 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999998655 899999999999999999999888667778
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
.+|||||..|+|+|..|...|.++++++..+.++.+++|+.....+++.++++|+++++ +...+++.. .+++..+++
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l-~~~t~ei~g--~~~~~~vr~ 224 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLL-EKNTEEIVG--EDKVEGVRF 224 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeec-ccchhhhhc--CcceeeEee
Confidence 89999999999999999999999999999999999999999999999999999999999 999999873 677889999
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
+||..+++|.||+|+|++||+++...+|+.+++ ||+||++|||++|+|||+|+|+.+....+|.. .-+.+|++
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLV------aP~yeq~~ 297 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLV------APLYEQAK 297 (793)
T ss_pred cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccceeh------hHHHHHHH
Confidence 999999999999999999999999999999985 99999999999999999999999988887754 34788999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCc----C-cEEEEccCCCcEEEEEEECCEEEEEEeccCC
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGS 444 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 444 (489)
.+|.++.+.....|..... +..++.+|.. +-..|+.. . .+++.....+.|.++.+++|+|+|++| .|+
T Consensus 298 v~a~hl~~~~~~~y~gsv~--stkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GD 370 (793)
T COG1251 298 VLADHLCGGEAEAYEGSVT--STKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGD 370 (793)
T ss_pred HHHHHhccCcccccccccc--hhhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eee
Confidence 9999998765444433211 2344445532 33445432 1 344454445779999999999999997 899
Q ss_pred HHHhHHHHHHHhcCCCCC
Q 011267 445 PEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (489)
..+-..|..++.++..++
T Consensus 371 t~d~~~l~~li~~~~~~s 388 (793)
T COG1251 371 TSDGGWLLDLILKGADIS 388 (793)
T ss_pred cccchHHHHHHhcCCCcc
Confidence 999999999998887775
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=4.1e-45 Score=372.97 Aligned_cols=399 Identities=20% Similarity=0.281 Sum_probs=287.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
++|||||||+||++||.+|++.+. +.+|+|||++++++|.++.++. ++........... ......+++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~~----------~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYAL----------AYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHcc----------cCCHHHHHH
Confidence 489999999999999999999864 7899999999999888766543 2211000000000 012245567
Q ss_pred HCCcEEEeCCcEEEEeCCCCEEEeCCC---e--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc-
Q 011267 132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~~~~~v~~~~g---~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~- 205 (489)
+.+++++.+++|++||++++.|.+.++ . ++.||+||||||++|.. |.. +.+++++++++.+++.+.+.+.
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhh
Confidence 789999998999999999999888653 2 47899999999999864 332 2456788888888887776543
Q ss_pred -CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 -~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
.+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++ +++|++++. .
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~-~~~v~~i~~---~-- 218 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRL-NEEIDAING---N-- 218 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEE-CCeEEEEeC---C--
Confidence 468999999999999999999999999999999998887 48999999999999999999999 999999962 1
Q ss_pred EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHH
Q 011267 285 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 363 (489)
Q Consensus 285 ~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~ 363 (489)
.+++++|+++++|.|++++|++||+++++..|++.+ +|+|.||+++||++|||||+|||+.......+..........
T Consensus 219 -~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~ 297 (438)
T PRK13512 219 -EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG 297 (438)
T ss_pred -EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchH
Confidence 467788889999999999999999999999999875 467999999999999999999999754322222222234445
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CcCCceeeecccccCCCcceeeeeecCCcCc-------EEEE---------ccCCCcEE
Q 011267 364 ARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIA 426 (489)
Q Consensus 364 A~~~g~~~a~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~~~~---------~~~~~~~~ 426 (489)
|..+|+.+|+||++.....+ ...+..+...++.. +..+|....+ .... .+....+.
T Consensus 298 A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 370 (438)
T PRK13512 298 AHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHL 370 (438)
T ss_pred HHHHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEE
Confidence 88899999999986432233 22222223333322 3334433210 0000 01112355
Q ss_pred EEEEE--CCEEEEEEeccCC-HHHhHHH-HHHHhcCCCCC-hhh--hcCCCcHH---HHHHHHHc
Q 011267 427 TFWID--SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVD-KAK--LQQASSVE---EALEIARA 481 (489)
Q Consensus 427 ~~~~~--~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~---e~~~~~~~ 481 (489)
++.++ +++|+|+++++.+ +.++... ..++..+.+++ ... +..||+++ +.+..+++
T Consensus 371 klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~~~ 435 (438)
T PRK13512 371 RVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGY 435 (438)
T ss_pred EEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHHHH
Confidence 66553 5999999986654 5665544 55678888775 332 45566654 55555443
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=5.4e-45 Score=374.43 Aligned_cols=398 Identities=21% Similarity=0.287 Sum_probs=292.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|||||||+||++||..|++.+. +.+|+|||+++.+.|..+.++. ++......+..+ .....+++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~ 68 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK 68 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence 79999999999999999999874 6799999999988777554432 221111111111 1345677888
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCC---CeEEe--eCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc--
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~---g~~i~--yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~-- 205 (489)
.+++++.+++|+.+|++.+.+.+.+ +..+. ||+||+|||++|. .|..+|.+.++++++++..+..++.+.+.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 9999998899999999998888754 55666 9999999999986 45667766678888888888877776653
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|||+|++|+|+|..+++.|.+|+++++.+++++..+++++.+.+.+.+++.||++++ +++|+++.. ++.+.
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~-~~~v~~i~~--~~~~~ 224 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHL-NEFVKSLIG--EDKVE 224 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEc-CCEEEEEec--CCcEE
Confidence 468999999999999999999999999999999998887668999999999999999999999 999999963 34444
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHH
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 364 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A 364 (489)
.+.+++ .+++||.+|+|+|.+|++++++++|++.+ +|+|.||+++||+.|||||+|||+..+....+.......+..|
T Consensus 225 ~v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A 303 (444)
T PRK09564 225 GVVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTA 303 (444)
T ss_pred EEEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHH
Confidence 555554 47999999999999999999999999864 5779999999999999999999998765444443334577789
Q ss_pred HHHHHHHHHHHhcCCCCCCCc-CCceeeecccccCCCcceeeeeecCCcCc---------EEEEc---------cCCCcE
Q 011267 365 RQSAQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKI 425 (489)
Q Consensus 365 ~~~g~~~a~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~G~~~~~---------~~~~~---------~~~~~~ 425 (489)
.+||+.+|.||++.. ..++. .+......++.. +..+|....+ ..... +....|
T Consensus 304 ~~qg~~~a~ni~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (444)
T PRK09564 304 NKLGRMVGENLAGRH-VSFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLY 375 (444)
T ss_pred HHHHHHHHHHhcCCC-CCCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEE
Confidence 999999999999643 22321 111111122221 3445543210 01110 111235
Q ss_pred EEEEE--ECCEEEEEEeccCC-HHH-hHHHHHHHhcCCCCC-hhh-hcC-CCcHHHHH
Q 011267 426 ATFWI--DSGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD-KAK-LQQ-ASSVEEAL 476 (489)
Q Consensus 426 ~~~~~--~~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~-~~~-~~~~~e~~ 476 (489)
.++.+ ++++|+|+++++.+ +.+ +..+..+|.++.+++ ... ... +|++.|+.
T Consensus 376 ~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 376 VKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred EEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence 66655 36999999975553 545 445566788888776 222 222 37776543
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=6.7e-43 Score=349.77 Aligned_cols=396 Identities=24% Similarity=0.370 Sum_probs=280.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCCC-----CCC------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPL-----DKK------------ 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~~-----~~~------------ 107 (489)
+..||+||||+|+||..||.++++.|. + +.+||+.+.+.-. -+--+|.++... ...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~-k--valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL-K--VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC-C--EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 467999999999999999999999997 2 9999999532210 011122111100 000
Q ss_pred CCCCCCCccc---cCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC--CeEEeeCcEEecCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~--g~~i~yd~lvlATG~~~~~~p~~~g 182 (489)
..++...... ...........++++++++++.+ +..-++ .++|...+ .+++.++++|||||++|..+| .++
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~ 154 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPP-GPG 154 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCC
Confidence 0011000000 00000111233455679999986 554444 56676665 478999999999999997544 334
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
+++..++ +.+........+++++|||||++|+|+|..++++|.+||++++.+++|+. +|+++++.+.+.|++.
T Consensus 155 --~~~~~~~----~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~ 227 (454)
T COG1249 155 --IDGARIL----DSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKG 227 (454)
T ss_pred --CCCCeEE----echhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHhC
Confidence 3333233 22232222367999999999999999999999999999999999999995 8999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEccCCCCCCc--hhhhcCCeecC-CcEEeCCCCCCCCCC
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPG 337 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~aD~vi~a~G~~p~~~--~~~~~gl~~~~-g~i~vd~~~~t~~~~ 337 (489)
|+++++ ++.+++++..+++ ..+.+++|+ ++.+|.+++|+|++||++ -|++.|++.++ |+|.||.+++|++||
T Consensus 228 gv~i~~-~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~ 304 (454)
T COG1249 228 GVKILL-NTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPG 304 (454)
T ss_pred CeEEEc-cceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCC
Confidence 999999 9999999865444 467888876 799999999999999998 38999999974 789999888889999
Q ss_pred eEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecCCcCcE
Q 011267 338 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 415 (489)
Q Consensus 338 Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 415 (489)
|||+|||+..+. ....|..+|+.++.|+++... ..|..+|+ ..|..+- +..+|....+.
T Consensus 305 IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea 365 (454)
T COG1249 305 IYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEA 365 (454)
T ss_pred EEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHH
Confidence 999999988654 223489999999999996222 24666786 3454442 44555542210
Q ss_pred ------EEEc--cC-----------CCcEEEEEEE--CCEEEEEEeccCCHHHhHHHHHH-HhcCCCCC-hh-hhcCCCc
Q 011267 416 ------IEIG--NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KA-KLQQASS 471 (489)
Q Consensus 416 ------~~~~--~~-----------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~ 471 (489)
+..+ .+ ...+.++.++ +++|+|++++..+++++.....+ ++.+.+.+ .. .++.|||
T Consensus 366 ~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT 445 (454)
T COG1249 366 KEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPT 445 (454)
T ss_pred HhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCC
Confidence 1111 01 2346676665 48999999988889998877655 57777665 23 4689999
Q ss_pred HHHHHHHHH
Q 011267 472 VEEALEIAR 480 (489)
Q Consensus 472 ~~e~~~~~~ 480 (489)
++|+++.|+
T Consensus 446 ~sE~~~~a~ 454 (454)
T COG1249 446 LSEALKEAA 454 (454)
T ss_pred hHHHHHHhC
Confidence 999999874
No 10
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.8e-41 Score=349.25 Aligned_cols=403 Identities=18% Similarity=0.266 Sum_probs=273.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC-CCCccccCC--------------CCC---CC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER-PALTKGYLF--------------PLD---KK 107 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~~-~~l~~~~~~--------------~~~---~~ 107 (489)
++.++|||||||||||++||..+++.|. +|+|||++...+- ++ +--+|.++. ... ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 4567999999999999999999999987 7999998642110 10 000111100 000 00
Q ss_pred CCCCCCCccccC---CCCCCCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVG---SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
..++........ .........++++. +++++.++.+ . .+.+++.+ ++.++.||+||||||+.|. .|.++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~--~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~ 153 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-F--ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL 153 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-E--ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence 001000000000 00001223455666 9999987543 2 34567766 4667999999999999997 4555664
Q ss_pred CCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC
Q 011267 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G 263 (489)
+...++.. +.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus 154 ~~~~~~~~------~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~G 226 (463)
T PRK06370 154 DEVGYLTN------ETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREG 226 (463)
T ss_pred CcCceEcc------hHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCC
Confidence 44333332 222222245799999999999999999999999999999999999885 78999999999999999
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCCCCCeE
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIF 339 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iy 339 (489)
|++++ +++|++++..+++....+... +++++++|.||+|+|.+|+++ + ++..|++.+ +|+|.||+++||++|+||
T Consensus 227 V~i~~-~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~Iy 305 (463)
T PRK06370 227 IDVRL-NAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIY 305 (463)
T ss_pred CEEEe-CCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEE
Confidence 99999 999999985433322223333 345799999999999999998 4 678888876 566999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC----
Q 011267 340 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 413 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~---- 413 (489)
|+|||+..+. ....|..+|+.+|.||++.....+ ..+|+ .. |..+- +..+|....
T Consensus 306 AiGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~-~~~p~------ia~vG~te~~a~~ 366 (463)
T PRK06370 306 AAGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPY--AT-YTDPP------LARVGMTEAEARK 366 (463)
T ss_pred EeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EE-EcCCC------cEeeeCCHHHHHH
Confidence 9999986532 334588999999999986433333 33443 22 22211 344554321
Q ss_pred ---cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCCcHH
Q 011267 414 ---ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVE 473 (489)
Q Consensus 414 ---~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 473 (489)
+. ... .+....+.++.++ +++|+|+++++.++.++... ..++.++.+++ ...++.|||++
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (463)
T PRK06370 367 SGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVS 446 (463)
T ss_pred cCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChH
Confidence 00 100 0111336666664 59999999877777776655 45678888886 34458899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|+++.|++++.+
T Consensus 447 e~~~~a~~~~~~ 458 (463)
T PRK06370 447 ELIPTLAQALRR 458 (463)
T ss_pred HHHHHHHHhhhh
Confidence 999999998754
No 11
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.2e-41 Score=349.09 Aligned_cols=403 Identities=18% Similarity=0.275 Sum_probs=280.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCC--------CCCCCCCCCC---
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF--------PLDKKPARLP--- 112 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~--------~~~~~~~~~~--- 112 (489)
++.++||+|||||+||++||.+|++.|. +|+|||+.+...... +.-++.+.. ........+.
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 4667999999999999999999999986 799999865432111 111111000 0000000000
Q ss_pred --CCccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCCCC
Q 011267 113 --GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 113 --~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~g 182 (489)
.+..... .........++++.+++++.+ ++..++....++...+|. ++.||+||||||+.|.. |+.++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~ 156 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD 156 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence 0000000 000001223456779999986 666777766667666664 68999999999999874 43333
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
...+.++ +++.+......+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 157 ~~~~~v~------~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~ 229 (461)
T PRK05249 157 FDHPRIY------DSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRDS 229 (461)
T ss_pred CCCCeEE------cHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 3333333 23334443456899999999999999999999999999999999999984 8999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeE
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 339 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iy 339 (489)
||++++ ++.+++++..++ .+ .+++.+|+++++|.|++|+|++|++++ ++.++++.+ +|++.||+++||+.|+||
T Consensus 230 gI~v~~-~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iy 306 (461)
T PRK05249 230 GVTIRH-NEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIY 306 (461)
T ss_pred CCEEEE-CCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEE
Confidence 999999 999999985433 33 466778889999999999999999885 578888875 567999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC-----
Q 011267 340 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 413 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~----- 413 (489)
|+|||+..+. ....|..+|+.+|.+|++... ..+..+|.. .|..+- +.++|....
T Consensus 307 AiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~ 367 (461)
T PRK05249 307 AVGDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAA 367 (461)
T ss_pred EeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHc
Confidence 9999996432 345699999999999985432 223445543 333321 333443321
Q ss_pred ---------------cEEEEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011267 414 ---------------ETIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 473 (489)
Q Consensus 414 ---------------~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 473 (489)
.....+. ...+.++.++ +++|+|+++++.++.++... ..++..+.+++ . ..++.|||+.
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 446 (461)
T PRK05249 368 KVPYEVGRARFKELARAQIAGD-NVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMA 446 (461)
T ss_pred CCCeEEEEEccccccceeecCC-CCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence 0011111 2336666553 58999999877787776655 45578888876 3 4457899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|+++.|++++.+
T Consensus 447 e~~~~~~~~~~~ 458 (461)
T PRK05249 447 EAYRVAALDGLN 458 (461)
T ss_pred HHHHHHHHHHhc
Confidence 999999876554
No 12
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=5.8e-42 Score=334.33 Aligned_cols=297 Identities=24% Similarity=0.347 Sum_probs=239.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
++++|||||||++|+.+|..|.+.. ++.+|||||+.++++|. |.|..-.....+.... .....+.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i-------------~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVATGTLSESEI-------------AIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhcCCCChhhe-------------eccHHHH
Confidence 5688999999999999999999985 36789999999998776 5554311111111111 1234556
Q ss_pred HHHC-CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc---
Q 011267 130 YKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--- 205 (489)
Q Consensus 130 ~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~--- 205 (489)
+++. +++++.+ +|++||.++++|+++++..++||+||+|+|+.+.. +..+|. .+..+.+++++|+.+++..+.
T Consensus 67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f 143 (405)
T COG1252 67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF 143 (405)
T ss_pred hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence 6644 4999984 99999999999999998889999999999999874 444553 234567889999987776553
Q ss_pred -----CC-----CcEEEECCCHHHHHHHHHHHhCC-------------CcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 206 -----KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 206 -----~~-----~~vvViG~G~~g~e~A~~l~~~g-------------~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
.. .+++|+|||++|+|+|..|+++- .+|+++++.+++|+ .+++++++..++.|+++
T Consensus 144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKL 222 (405)
T ss_pred HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHC
Confidence 12 26999999999999999987542 38999999999999 59999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEccCCCCCCchhhh-cCCeec-CCcEEeCCCCCC-CCCCe
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGI 338 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~I 338 (489)
||++++ ++.|++++++ .|++++|+ +|+||.+||++|.+++ +++++ .+++.+ .|++.||+++|+ ++|+|
T Consensus 223 GV~v~l-~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~I 294 (405)
T COG1252 223 GVEVLL-GTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDI 294 (405)
T ss_pred CCEEEc-CCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCe
Confidence 999999 9999999854 58888887 4999999999999998 78888 588777 488999999998 89999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
||+|||+..... +. .+...+.|.+||..+|+||..
T Consensus 295 Fa~GD~A~~~~~---~p-~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 295 FAAGDCAAVIDP---RP-VPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred EEEeccccCCCC---CC-CCChhHHHHHHHHHHHHHHHH
Confidence 999999987664 11 134667899999999999975
No 13
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.4e-40 Score=339.68 Aligned_cols=396 Identities=18% Similarity=0.229 Sum_probs=273.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCCC----CCCCccccCCC------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYE----RPALTKGYLFP------------ 103 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~---------~~~~y~----~~~l~~~~~~~------------ 103 (489)
..++||+||||||||++||..+++.|. +|+|||+. ..+... .+--+|.++..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence 446899999999999999999999987 79999962 111110 01111111100
Q ss_pred --CC---CCCCCCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCC
Q 011267 104 --LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT 173 (489)
Q Consensus 104 --~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~ 173 (489)
.. ....++....... -..........+...+++++.+ ++..+++...+|.+.+|+ ++.||+||||||++
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 00 0000000000000 0000000112345579999986 888899888888888876 58899999999999
Q ss_pred CCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHH
Q 011267 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (489)
Q Consensus 174 ~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~ 253 (489)
|. .|.++|.+ ...+.++...+ ...+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+
T Consensus 179 p~-~p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~ 248 (499)
T PLN02507 179 AQ-RPNIPGKE-----LAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRA 248 (499)
T ss_pred CC-CCCCCCcc-----ceechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHH
Confidence 86 45444421 11233333332 234789999999999999999999999999999999988874 8999999
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQ 330 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~ 330 (489)
.+.+.|++.||++++ +++|++++..+ +.+ .+.+.+|+++++|.|++++|++|++++ ++.+|++.+ +|+|.||++
T Consensus 249 ~l~~~l~~~GI~i~~-~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~ 325 (499)
T PLN02507 249 VVARNLEGRGINLHP-RTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY 325 (499)
T ss_pred HHHHHHHhCCCEEEe-CCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCC
Confidence 999999999999999 99999998543 333 467778889999999999999999987 678898886 467999999
Q ss_pred CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeee
Q 011267 331 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFF 408 (489)
Q Consensus 331 ~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~ 408 (489)
+||++|||||+|||+..+. ....|..+|+.++.||+++... .+..+|+ ..|+.+- +..+
T Consensus 326 ~~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~v 386 (499)
T PLN02507 326 SRTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVV 386 (499)
T ss_pred CcCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEE
Confidence 9999999999999996432 3456999999999999864332 2334453 3444421 2334
Q ss_pred cCCcC--------cE-EE-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-
Q 011267 409 GDNVG--------ET-IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K- 463 (489)
Q Consensus 409 G~~~~--------~~-~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~- 463 (489)
|.... .. +. .+.....+.++.++ +++|+|++++..++.++... ..+|..+.+++ .
T Consensus 387 Glte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~ 466 (499)
T PLN02507 387 GLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFD 466 (499)
T ss_pred eCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 43211 00 00 01111235666554 58999999877777766655 45678888886 3
Q ss_pred hhhcCCCcHHHHHHHHH
Q 011267 464 AKLQQASSVEEALEIAR 480 (489)
Q Consensus 464 ~~~~~~~~~~e~~~~~~ 480 (489)
..++.|||++|.+..++
T Consensus 467 ~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 467 STVGIHPSAAEEFVTMR 483 (499)
T ss_pred hcCcCCCChHHHHHHHH
Confidence 44688999999999876
No 14
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.2e-41 Score=345.30 Aligned_cols=402 Identities=17% Similarity=0.256 Sum_probs=272.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccCC---------------CC--CCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF---------------PL--DKK 107 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~~---------------~~--~~~ 107 (489)
...++||+|||||+||++||..|++.|. +|+|||++..-+ .++ +--++.++. .. ...
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 4568999999999999999999999986 799999864211 000 000111000 00 000
Q ss_pred CCCCCCCccccC---CCCC-CCChhHHHH-CCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVG---SGGE-RQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK 180 (489)
Q Consensus 108 ~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~ 180 (489)
..++..+..... .... ......+++ .+++++.+ ++..+|.+..+|.+.+| .++.||+||||||++|. .|.+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i 157 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPV 157 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCC
Confidence 000000000000 0000 001122333 37899986 79999998888988887 37999999999999987 4555
Q ss_pred CCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHH
Q 011267 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (489)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~ 260 (489)
+|.+...+ +. ..+...+ ...+++++|||+|++|+|+|..|.++|.+|+++++ +++++. +++++.+.+.+.++
T Consensus 158 ~G~~~~~~--~~-~~~~~~l---~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~ 229 (468)
T PRK14694 158 PGLAETPY--LT-STSALEL---DHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFR 229 (468)
T ss_pred CCCCCCce--Ec-chhhhch---hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHH
Confidence 55332222 22 1222222 23478999999999999999999999999999986 467764 78999999999999
Q ss_pred hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh--hhcCCeecCCcEEeCCCCCCCCCCe
Q 011267 261 QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 261 ~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~I 338 (489)
+.||++++ ++.+++++.+ ++. ..+.+.++ ++++|.||+|+|.+|+++++ +.++++.++|.|.||+++||++|+|
T Consensus 230 ~~GI~v~~-~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~I 305 (468)
T PRK14694 230 REGIEVLK-QTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGI 305 (468)
T ss_pred hCCCEEEe-CCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCE
Confidence 99999999 9999999754 232 23555444 79999999999999999874 6678877667799999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC----
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 413 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~---- 413 (489)
||+|||+..+. ....|..+|+.+|.||++... ..+..+|.+ ..++.+ +..+|....
T Consensus 306 yA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~ 366 (468)
T PRK14694 306 YAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQA 366 (468)
T ss_pred EEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHH
Confidence 99999997543 334588899999999986432 223334543 222222 444554421
Q ss_pred ---c--EEEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011267 414 ---E--TIEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 473 (489)
Q Consensus 414 ---~--~~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 473 (489)
+ .... ......+.++.++ +++|+|++++..++.++... ..++..+.+++ . ...+.|||++
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (468)
T PRK14694 367 QGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMV 446 (468)
T ss_pred cCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchH
Confidence 0 0010 0011236666553 59999999877677776655 45678888886 3 4457899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|+++.|++.+..
T Consensus 447 e~~~~~~~~~~~ 458 (468)
T PRK14694 447 EGLKLCAQTFTK 458 (468)
T ss_pred HHHHHHHHhhhc
Confidence 999999887643
No 15
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.7e-41 Score=346.48 Aligned_cols=403 Identities=22% Similarity=0.290 Sum_probs=274.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCCC----------------CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPLD----------------KKPAR 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~~----------------~~~~~ 110 (489)
..+|||||||||||++||..|++.|. +|+|||++..-. +..+.-++.++.... .....
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 56899999999999999999999987 799999876211 111111221110000 00000
Q ss_pred CCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC-CeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~-g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
+..+..... ..........+++.+++++.+ ++..+++...++...+ +.++.||+||||||++|..+ +|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCC
Confidence 000000000 000001223455679999986 6777776655555333 46799999999999998643 243333
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
+... .+..+..++ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 156 ~~~v-~~~~~~~~~---~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 156 GRVI-WTSDEALNL---DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI 230 (462)
T ss_pred CCeE-EcchHhhCc---cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence 3222 222333222 235689999999999999999999999999999999999885 89999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEccCCCCCCchh--hhcCCeecCCcEEeCCCCCCCCCCeEEe
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAI 341 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~ 341 (489)
++ +++|++++.++ +.+ .+.+.++ +++++|.||+|+|.+|+++++ +..|++.++|.+.||+++||+.|+|||+
T Consensus 231 ~~-~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAi 307 (462)
T PRK06416 231 KT-GAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAI 307 (462)
T ss_pred Ee-CCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEe
Confidence 99 99999998543 333 4555555 679999999999999999874 6888887767799999999999999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCc-------
Q 011267 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------- 414 (489)
Q Consensus 342 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~------- 414 (489)
|||+..+. .+..|..+|+.+|.||++. ...++.....+...++.. +..+|....+
T Consensus 308 GD~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 308 GDIVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPAVTYTHPE-------VASVGLTEAKAKEEGFD 369 (462)
T ss_pred eecCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEECCCc-------eEEEeCCHHHHHhcCCC
Confidence 99996422 4567999999999999863 333333222223333332 4445544211
Q ss_pred EE-EE---c--------cCCCcEEEEEE--ECCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011267 415 TI-EI---G--------NFDPKIATFWI--DSGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 477 (489)
Q Consensus 415 ~~-~~---~--------~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~ 477 (489)
.. .. . +....+.++.+ ++++|+|+++++.++.++... ..++.++.+++ . ..+..|||+.|+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 449 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALG 449 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHH
Confidence 00 00 0 01123555555 369999999877777776655 45678888886 3 33578999999999
Q ss_pred HHHccCCc
Q 011267 478 IARAALPV 485 (489)
Q Consensus 478 ~~~~~~~~ 485 (489)
.|++.+..
T Consensus 450 ~~~~~~~~ 457 (462)
T PRK06416 450 EAALAAAG 457 (462)
T ss_pred HHHHHhcc
Confidence 99977654
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.3e-40 Score=340.56 Aligned_cols=392 Identities=20% Similarity=0.280 Sum_probs=265.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCC--------------CC-C--CCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFP--------------LD-K--KPAR 110 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~--------------~~-~--~~~~ 110 (489)
++||+||||||||++||..+++.|. +|+|||++..-. ...+--+|.++.. .. . ...+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---cEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 5899999999999999999999987 699999863211 0001111111000 00 0 0000
Q ss_pred CCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
++....... ..........+++.+++++.++.+ . .+.++|.+ ++..+.||+||||||++|..++.++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~--~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~--- 151 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-F--TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE--- 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc---
Confidence 000000000 000001123345679999987433 2 23456666 5667999999999999986431444422
Q ss_pred eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
... +.+.+......+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.|+++||+++
T Consensus 152 --~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 152 --LGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-SFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred --eeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCEEE
Confidence 211 2233333233578999999999999999999999999999999999987 4899999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEecc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD 343 (489)
+ ++.++++..++++. ..+.+++| +++++|.||+++|++||+++ ++.++++.+ +|++.||+++||++|+|||+||
T Consensus 226 ~-~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD 303 (450)
T TIGR01421 226 K-LSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGD 303 (450)
T ss_pred c-CCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEe
Confidence 9 99999998543332 35677777 57999999999999999985 578899886 5679999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcCc------
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 414 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~------ 414 (489)
|+..+. .+..|..+|+.+|.||+++.. ..+..+|+ ..|..+- +..+|....+
T Consensus 304 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g 364 (450)
T TIGR01421 304 VVGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYG 364 (450)
T ss_pred cCCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcC
Confidence 996432 345689999999999986432 23445554 2333321 2333432210
Q ss_pred ---E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011267 415 ---T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 474 (489)
Q Consensus 415 ---~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e 474 (489)
. +... +....+.++.++ +++|+|++++..++.++... ..++.++.+++ . ..++.|||++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T TIGR01421 365 KENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444 (450)
T ss_pred CCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 0 0000 111235555443 59999999877778776655 55678888886 3 34578999999
Q ss_pred HHHHH
Q 011267 475 ALEIA 479 (489)
Q Consensus 475 ~~~~~ 479 (489)
++..+
T Consensus 445 ~~~~~ 449 (450)
T TIGR01421 445 ELVTM 449 (450)
T ss_pred HHhhc
Confidence 98765
No 17
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.9e-41 Score=343.30 Aligned_cols=402 Identities=16% Similarity=0.226 Sum_probs=270.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCC---------C-------CCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF---------P-------LDKKP 108 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~---------~-------~~~~~ 108 (489)
+.++||+|||||+||++||..+++.|. +|+|||+.+.+.-. + +--+|.++. . .....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK 78 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 346999999999999999999999986 79999986533211 1 111111110 0 00000
Q ss_pred CCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
.++..+..... ..........+++.+++++.+ ++..++.....|...+| .++.||+||||||++|..+|.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~- 156 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH- 156 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-
Confidence 00000000000 000000123355679999986 56556654444555566 479999999999999875554333
Q ss_pred CCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC
Q 011267 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G 263 (489)
..+++.. ..+. ......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|++.
T Consensus 157 ~~~~v~~---~~~~---~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~- 228 (471)
T PRK06467 157 DDPRIWD---STDA---LELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ- 228 (471)
T ss_pred CCCcEEC---hHHh---hccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-
Confidence 2233322 1222 222245789999999999999999999999999999999999985 8999999999999988
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
|++++ ++.|++++..++ .+ .+.+.+ + +++++|.||+++|++|++++ ++.+|++.+ +|+|.||+++||++|
T Consensus 229 v~i~~-~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p 305 (471)
T PRK06467 229 FNIML-ETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVP 305 (471)
T ss_pred eEEEc-CCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCC
Confidence 99999 999999975433 22 355443 2 46999999999999999985 577888886 567999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
+|||+|||+..+. ....|..+|+.+|.+|++.. ..+ ...|+. ..++.+ +..+|....
T Consensus 306 ~VyAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~-~~~~~~~~p~~--~~~~p~-------ia~vGlte~e 365 (471)
T PRK06467 306 HIFAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKK-HYFDPKVIPSI--AYTEPE-------VAWVGLTEKE 365 (471)
T ss_pred CEEEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeE--EECCCc-------eeEEECCHHH
Confidence 9999999986432 34569999999999998632 333 345542 222221 344454321
Q ss_pred ------cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCC
Q 011267 414 ------ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQAS 470 (489)
Q Consensus 414 ------~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~ 470 (489)
+. ... .+....+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.||
T Consensus 366 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hP 445 (471)
T PRK06467 366 AKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHP 445 (471)
T ss_pred HHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 00 000 0111235666554 48999999877777776655 45578888876 3 3357899
Q ss_pred cHHHHHHHHHccCCcc
Q 011267 471 SVEEALEIARAALPVE 486 (489)
Q Consensus 471 ~~~e~~~~~~~~~~~~ 486 (489)
|+.|+++.|++++..+
T Consensus 446 t~~e~~~~a~~~~~~~ 461 (471)
T PRK06467 446 TLHESVGLAAEAFEGS 461 (471)
T ss_pred ChHHHHHHHHHhhcCC
Confidence 9999999999876543
No 18
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.7e-40 Score=339.55 Aligned_cols=393 Identities=20% Similarity=0.289 Sum_probs=270.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccCC-----------------CCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF-----------------PLDKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~~-----------------~~~~~~~ 109 (489)
..+||+||||||||++||..|++.|. +|+|||++..-. .++ +--+|.++. .......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 36899999999999999999999987 799999863211 000 100110000 0000000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
++........ ..........+.+.+++++.+ ++..++. ++|.+ +|.++.||+||||||++|. .|.++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~--- 151 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVDA--HTVEV-NGERYTADHILIATGGRPS-IPDIPGA--- 151 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC--CEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc---
Confidence 0000000000 000001123345679999986 6666664 67777 6788999999999999986 4544442
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
....+ .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||++
T Consensus 152 --~~~~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i 225 (450)
T PRK06116 152 --EYGIT---SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRL 225 (450)
T ss_pred --ceeEc---hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEE
Confidence 21211 222222223578999999999999999999999999999999998887 489999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEecc
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD 343 (489)
++ +++|++++.++++.+ .+.+.+|+++++|.||+|+|.+|+++. ++.++++.+ +|.|.||+++||++|||||+||
T Consensus 226 ~~-~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (450)
T PRK06116 226 HT-NAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGD 303 (450)
T ss_pred EC-CCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEee
Confidence 99 999999986544433 477788889999999999999999985 678888886 5669999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-C--CCCcCCceeeecccccCCCcceeeeeecCCcC-------
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 413 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------- 413 (489)
|+..+. .+..|..+|+.+|.||++... . .|..+|+ ..|+.+. +..+|....
T Consensus 304 ~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~ 364 (450)
T PRK06116 304 VTGRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYG 364 (450)
T ss_pred cCCCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCC
Confidence 986422 455699999999999986433 2 3445554 3444431 334443221
Q ss_pred c--EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011267 414 E--TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 474 (489)
Q Consensus 414 ~--~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e 474 (489)
+ .. ... +....+.+++++ +++|+|++++..++.++... ..+|.++.+++ . ..++.|||++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 365 EDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred CCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 1 11 000 111336666654 58999999877777776655 55678888886 3 44578999999
Q ss_pred HHHHHH
Q 011267 475 ALEIAR 480 (489)
Q Consensus 475 ~~~~~~ 480 (489)
++..++
T Consensus 445 ~~~~~~ 450 (450)
T PRK06116 445 EFVTMR 450 (450)
T ss_pred HHhhcC
Confidence 998763
No 19
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.7e-40 Score=338.59 Aligned_cols=391 Identities=18% Similarity=0.244 Sum_probs=268.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCC--------------C--CCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFP--------------L--DKKPAR 110 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~--------------~--~~~~~~ 110 (489)
+|||+||||||||++||..+++.|. +|+|||++. +... .+--+|.++.. . .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 5899999999999999999999987 699999853 2211 01111111000 0 000000
Q ss_pred CCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
+....... -..........+++.+++++.+ ++..++++...+. .+|.++.||+||||||++|. .|.++|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~--- 151 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE--- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence 00000000 0000011233456679999986 7888887644443 46778999999999999986 45444422
Q ss_pred eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
...+. +........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.+++.||+++
T Consensus 152 --~~~~~---~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 152 --LGITS---NEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred --ceech---HHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEE
Confidence 11122 222222235789999999999999999999999999999999998885 789999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 344 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~ 344 (489)
+ +++|+++...+++ ..+.+.+|+++++|.||+|+|.+|+++. ++..|++.+ +|++.||+++||++|||||+|||
T Consensus 226 ~-~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 302 (446)
T TIGR01424 226 P-QTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDV 302 (446)
T ss_pred e-CCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeecc
Confidence 9 9999999754333 2466778889999999999999999885 578888876 46799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC--------c
Q 011267 345 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------E 414 (489)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--------~ 414 (489)
+..+. ....|..+|+.++.||++....++ ..+|+ ..|+.+. +..+|.... .
T Consensus 303 ~~~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~------ia~vG~te~~a~~~~~~~ 363 (446)
T TIGR01424 303 TDRIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIAT---AVFSQPP------LGTVGLTEEEAREKFTGD 363 (446)
T ss_pred CCCcc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCe---EEeCCch------hEEEECCHHHHHhhcCCC
Confidence 96322 344689999999999986443333 34554 2343321 233443211 0
Q ss_pred EE-E-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011267 415 TI-E-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 477 (489)
Q Consensus 415 ~~-~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~ 477 (489)
.. . ..+....+.++.++ +++|+|++++..++.++... ..+|.++.+++ . ..++.|||++|++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 443 (446)
T TIGR01424 364 ILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFV 443 (446)
T ss_pred EEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHh
Confidence 00 0 01112235666553 59999999877777776655 45678888886 3 45688999999987
Q ss_pred HH
Q 011267 478 IA 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 444 ~~ 445 (446)
T TIGR01424 444 TM 445 (446)
T ss_pred hc
Confidence 65
No 20
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-40 Score=339.10 Aligned_cols=402 Identities=20% Similarity=0.268 Sum_probs=268.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCCCC-----C--CCCCCCCCcccc
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPLD-----K--KPARLPGFHTCV 118 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~~~-----~--~~~~~~~~~~~~ 118 (489)
+++||+||||||||++||..+++.|. +|+|||+...+... .+--+|.++.... . ....+ +.....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~ 77 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKP 77 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccC
Confidence 45899999999999999999999987 79999974332211 0111111110000 0 00000 000000
Q ss_pred CCCCC--------------CCChhHHHHCCcEEEeCCcEEEEeCCC-CEEEeCCCe--EEeeCcEEecCCCCCCCCCCCC
Q 011267 119 GSGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEK-QTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 119 ~~~~~--------------~~~~~~~~~~~i~~~~~~~V~~id~~~-~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~ 181 (489)
..++. .....++++.+++++.+ +. .++.+. ..+...+|. ++.||+||||||++|..+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~i---p 152 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKG-WG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPL---P 152 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCC---C
Confidence 00000 01123345568888876 33 344333 244455663 699999999999988532 3
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|...++...+. .+.+......+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.|++
T Consensus 153 g~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~ 227 (466)
T PRK06115 153 GVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTK 227 (466)
T ss_pred CCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 43344544442 2333332346799999999999999999999999999999999999985 899999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEe-CC--CcEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKL-ED--GSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMP 336 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~--g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~ 336 (489)
.||++++ +++|++++.++++....+.. .+ ++++++|.|++++|++||++. ++..+++.+++++.||+++||++|
T Consensus 228 ~gV~i~~-~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~ 306 (466)
T PRK06115 228 QGMKFKL-GSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVP 306 (466)
T ss_pred cCCEEEE-CcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCC
Confidence 9999999 99999998543332222222 12 357999999999999999985 567788876567899999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
+|||+|||+..+. ....|..+|+.+|.||++... ..+..+|+. +|..+- +..+|....
T Consensus 307 ~IyA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~---~~t~p~------ia~vGlte~~a 367 (466)
T PRK06115 307 GVWVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGV---IYTRPE------VATVGKTEEQL 367 (466)
T ss_pred CEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE---EECCcc------cEEeeCCHHHH
Confidence 9999999997532 345689999999999986432 234455643 232211 334444321
Q ss_pred -----cEE-E------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCC
Q 011267 414 -----ETI-E------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQAS 470 (489)
Q Consensus 414 -----~~~-~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~ 470 (489)
+.. . .++ ...+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.||
T Consensus 368 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hP 446 (466)
T PRK06115 368 KAEGRAYKVGKFPFTANSRAKINHE-TEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHP 446 (466)
T ss_pred HHCCCCEEEEEEecccChhhHhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCC
Confidence 010 0 111 1235666554 58999999877777776655 45678888876 3 4457899
Q ss_pred cHHHHHHHHHccCCcc
Q 011267 471 SVEEALEIARAALPVE 486 (489)
Q Consensus 471 ~~~e~~~~~~~~~~~~ 486 (489)
|++|.++.|++.+..+
T Consensus 447 t~~e~~~~a~~~~~~~ 462 (466)
T PRK06115 447 TRSEALRQAAMNVEGW 462 (466)
T ss_pred ChHHHHHHHHHHHhcc
Confidence 9999999999876654
No 21
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.8e-40 Score=336.24 Aligned_cols=395 Identities=18% Similarity=0.239 Sum_probs=269.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-ccccCCCCCCCCCCCCCCccc---cCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTC---VGSG 121 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~-~y~---~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (489)
+.+||||||||+||++||..|++.|. +|+|||+++.. ... +.-. ++.++... ....++...... .-..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~~-~~~~~~~~~~~~~~~~~~~ 77 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHDA-QQHTDFVRAIQRKNEVVNF 77 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHHh-ccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999986 69999987532 111 0000 11111110 000010000000 0000
Q ss_pred CCCCC-hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe-EEeeCcEEecCCCCCCCCCCCCCCC-CCceEeecCHHHHH
Q 011267 122 GERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADAD 198 (489)
Q Consensus 122 ~~~~~-~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~-~i~yd~lvlATG~~~~~~p~~~g~~-~~gv~~~~~~~~~~ 198 (489)
..... ....+..+++++.+ ++..++.....|.+.++. ++.||+||||||++|. .|.++|.+ .++++. +.
T Consensus 78 ~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~------~~ 149 (441)
T PRK08010 78 LRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYD------ST 149 (441)
T ss_pred HHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEEC------hh
Confidence 00000 11122348999876 788888876777777775 6999999999999986 45556642 344433 23
Q ss_pred HHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 199 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 199 ~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++++ ++.|++++.
T Consensus 150 ~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~-~~~v~~i~~ 227 (441)
T PRK08010 150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIIL-NAHVERISH 227 (441)
T ss_pred HhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEe-CCEEEEEEE
Confidence 33333345789999999999999999999999999999999999885 6899999999999999999999 999999985
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcc
Q 011267 279 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
+ ++.+ .+.++++ ++++|.|++|+|.+||+++ ++.+|++.+ +|+|.||+++||++|||||+|||+..+.
T Consensus 228 ~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~------ 298 (441)
T PRK08010 228 H-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ------ 298 (441)
T ss_pred c-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc------
Confidence 4 3333 3555555 5999999999999999886 567888876 5779999999999999999999997543
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCCC---CCCcCCceeeecccccCCCcceeeeeecCCcC-------c--EEE------
Q 011267 356 ARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIE------ 417 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~--~~~------ 417 (489)
..+ .|..+|+.++.||++.... .+..+|. ...++.+ +..+|.... + ...
T Consensus 299 --~~~--~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~ 365 (441)
T PRK08010 299 --FTY--ISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAI 365 (441)
T ss_pred --chh--HHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcC
Confidence 123 3778899999999863221 2234553 2222222 334444321 0 001
Q ss_pred -----EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHHH-HHHhcCCCCC-h-hhhcCCCcHHHHHHHHHc
Q 011267 418 -----IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVEEALEIARA 481 (489)
Q Consensus 418 -----~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~ 481 (489)
.++ ...+.++.++ +++|+|+++++.++.++.... .++.++.+++ . ..++.|||+.|.+..++.
T Consensus 366 ~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 366 PRARVMND-TRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred hhhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 111 1235666553 599999998777777766654 4568888876 2 445789999999998865
No 22
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8e-40 Score=337.66 Aligned_cols=403 Identities=20% Similarity=0.268 Sum_probs=270.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCC------------C----CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFP------------L----DKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~------------~----~~~~~ 109 (489)
..+|||||||||||++||..|++.|. +|+|||++. +... .+--+|.++.. . .....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 47899999999999999999999987 799999863 2111 01011111100 0 00000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCC-------CCEEEeCCC--eEEeeCcEEecCCCCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRF 177 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~-------~~~v~~~~g--~~i~yd~lvlATG~~~~~~ 177 (489)
++........ ........+.+++.+++++.+ ++..+|.. ..+|.+.+| .++.||+||||||++|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 0000000000 000001123456679999986 78888887 556777777 5799999999999998644
Q ss_pred CCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHH
Q 011267 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (489)
Q Consensus 178 p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~ 257 (489)
|. ...++.+.+ +..+.. .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+
T Consensus 158 p~---~~~~~~~~~-~~~~~~---~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~ 229 (472)
T PRK05976 158 PG---LPFDGEYVI-SSDEAL---SLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVAR 229 (472)
T ss_pred CC---CCCCCceEE-cchHhh---CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHH
Confidence 32 223332222 222222 22234689999999999999999999999999999999999885 78999999999
Q ss_pred HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCC
Q 011267 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRT 333 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t 333 (489)
.+++.||++++ +++|+++...+++.+..+.+.+| +++++|.+|+|+|.+|+++. ++..++..++|.+.||++++|
T Consensus 230 ~l~~~gI~i~~-~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t 308 (472)
T PRK05976 230 LLKKLGVRVVT-GAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQT 308 (472)
T ss_pred HHHhcCCEEEe-CcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCccc
Confidence 99999999999 99999997422334444555566 36999999999999999875 456677666678999999999
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 413 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~ 413 (489)
+.|+|||+|||+..+ ..+..|..+|+.++.+|.+.....+++....+...++.. +..+|....
T Consensus 309 s~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~-------~a~vG~te~ 371 (472)
T PRK05976 309 KERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPE-------VASVGLTEE 371 (472)
T ss_pred CCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCc-------eEEEeCCHH
Confidence 999999999998632 245569999999999998643233333222222222221 333343321
Q ss_pred -------cEE-------------EEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcC
Q 011267 414 -------ETI-------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ 468 (489)
Q Consensus 414 -------~~~-------------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~ 468 (489)
+.. ..+. ...+.++.++ +++|+|++++..++.++... ..++.++.+++ . ..++.
T Consensus 372 ~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 372 EAKEAGYDVKVGKFPFAANGKALTYGE-SDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHcCCCEEEEEEECCcchhhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 000 0111 1335555553 58999999877777776654 55678888886 3 34578
Q ss_pred CCcHHHHHHHHHccCC
Q 011267 469 ASSVEEALEIARAALP 484 (489)
Q Consensus 469 ~~~~~e~~~~~~~~~~ 484 (489)
|||+.|.++.|++++.
T Consensus 451 hPt~~e~~~~~~~~~~ 466 (472)
T PRK05976 451 HPTLSEAIQEAALAAD 466 (472)
T ss_pred CCChHHHHHHHHHHhh
Confidence 9999999999987653
No 23
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=9.4e-40 Score=336.74 Aligned_cols=398 Identities=21% Similarity=0.268 Sum_probs=270.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccC---------CCC------CCCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYL---------FPL------DKKPARLPG 113 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~---------~~~------~~~~~~~~~ 113 (489)
+|||||||||||++||..+++.|. +|+|||+++... .++ +--+|.++ ... .....++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 699999999999999999999986 799999875211 000 00011100 000 000000000
Q ss_pred Ccc----ccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe-EEeeCcEEecCCCCCCCCCCCCCCCCCce
Q 011267 114 FHT----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGV 188 (489)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~-~i~yd~lvlATG~~~~~~p~~~g~~~~gv 188 (489)
... ...........+.+++.+++++.+ ++..++ .++|.+.+|. .+.||+||||||+.|. .|.++|.+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~ 153 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFKD--PKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGY 153 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCce
Confidence 000 000000011235567789999886 454443 5778887754 6899999999999986 455566443333
Q ss_pred EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
.+. +.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++...+.+.+++.||++++
T Consensus 154 ~~~------~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~ 226 (463)
T TIGR02053 154 LTS------EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVT 226 (463)
T ss_pred ECc------hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEc
Confidence 322 222222234689999999999999999999999999999999999985 7999999999999999999999
Q ss_pred cCceEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCCCCCeEEec
Q 011267 269 VGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 342 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~---~g~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~G 342 (489)
+++|++++.++++ ..+.+. +++++++|.||+|+|++|+++ + ++..+++.+ +|+|.||+++||+.|+|||+|
T Consensus 227 -~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiG 303 (463)
T TIGR02053 227 -SAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAG 303 (463)
T ss_pred -CcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEee
Confidence 9999999854332 234432 235799999999999999998 4 678888875 567999999999999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC-------
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 413 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------- 413 (489)
||+..+. .+..|..+|+.+|.||++.....+ ..+|+ ....+.+ +..+|....
T Consensus 304 D~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~ 364 (463)
T TIGR02053 304 DVTGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGI 364 (463)
T ss_pred ecCCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCC
Confidence 9997532 445699999999999986423333 33443 2222221 444554321
Q ss_pred cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011267 414 ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 476 (489)
Q Consensus 414 ~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~ 476 (489)
+. ... . +....+.++.++ +++|+|+++++.++.++... ..++.++.+++ . .....|||+.|.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~ 444 (463)
T TIGR02053 365 ECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGL 444 (463)
T ss_pred CeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHH
Confidence 00 000 0 011235666554 59999999877788776666 45568888775 3 3346799999999
Q ss_pred HHHHccCCc
Q 011267 477 EIARAALPV 485 (489)
Q Consensus 477 ~~~~~~~~~ 485 (489)
..|++.+..
T Consensus 445 ~~a~~~~~~ 453 (463)
T TIGR02053 445 KLAAQTFYR 453 (463)
T ss_pred HHHHHHhhc
Confidence 999987653
No 24
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-41 Score=317.80 Aligned_cols=405 Identities=23% Similarity=0.379 Sum_probs=313.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCC--CCCCh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG--ERQTP 127 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 127 (489)
++.-.+|||+|.+..+++..++.... +..+.+|+.++..||.||+|++.+++..++....--.|-.+.|... ++...
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 35679999999999999998888765 7899999999999999999999888765544433223333333221 22222
Q ss_pred hHH---------HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCC---CCCCceEeecCHH
Q 011267 128 EWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVA 195 (489)
Q Consensus 128 ~~~---------~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g---~~~~gv~~~~~~~ 195 (489)
.|| ..-|+.+..+.+|..||.+.+.|+++||.+|.||+++||||.+|..++.+.. .-...+.+++...
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~ 335 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA 335 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence 222 2338899999999999999999999999999999999999999987764422 1234567899999
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
|.+++...+.+.++|.|||+|++|.|+|+.|.+. |.+|.-+......+...+++-++++-.+.+++.||.++. |+
T Consensus 336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~p-na 414 (659)
T KOG1346|consen 336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRP-NA 414 (659)
T ss_pred HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceecc-ch
Confidence 9999988888889999999999999999999764 567887777778888888999999999999999999999 99
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecC--CcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 272 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV--GGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~--g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
.|..+.... +.+ .+.++||.++..|.||+|+|..||+++++..|++.|. ||+.||..++.. .|||++||++.+.+
T Consensus 415 ~v~sv~~~~-~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCC-KNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhc-cce-EEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhc
Confidence 999987543 333 5889999999999999999999999999999999873 899999999875 89999999999999
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeeccc---ccCCC---ccee-eeeecCCc----------
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE---YEGSP---RKVW-WQFFGDNV---------- 412 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~---~~~~~---~~~~-~~~~G~~~---------- 412 (489)
...|++ |++||.+|+..|+.+..||.+ ...+|.....||++.-- |.+.- ..+. +..+-.+.
T Consensus 492 ~~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se 569 (659)
T KOG1346|consen 492 GVLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSE 569 (659)
T ss_pred ccccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhh
Confidence 888764 588999999999999999986 45678888899997432 11100 0000 00000000
Q ss_pred --C----cE------------------E----EEccCCCcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhcCCCCC
Q 011267 413 --G----ET------------------I----EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 413 --~----~~------------------~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (489)
+ +. + ..+...++-+.||++|++|||++| .|--..+...++.|..+...|
T Consensus 570 ~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 570 SSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred ccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence 0 00 0 000112366889999999999997 666668888899988776654
No 25
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=2.1e-39 Score=335.70 Aligned_cols=410 Identities=16% Similarity=0.242 Sum_probs=267.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCCC---------------CCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPLD---------------KKPA 109 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~~---------------~~~~ 109 (489)
.+.++||+|||||+||++||..+++.|. +|+|||++..-. ...+--+|.++.... ....
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~ 121 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSF 121 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCcc
Confidence 3467899999999999999999999986 799999863211 011111221111100 0000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCC--------------------CEE------EeCCCeE
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--------------------QTL------ITNSGKL 160 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--------------------~~v------~~~~g~~ 160 (489)
+++....... ........+.+++.+++++.+. ..-++... .+| ...+|.+
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~-a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK-GSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 0000000000 0000112234566799998864 22222111 112 2346778
Q ss_pred EeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 161 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 161 i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+.||+||||||+.|. .|.++|.+ .+ + + .+.+.+ +..+++++|||+|++|+|+|..+.++|.+|+++++.+
T Consensus 201 i~ad~lVIATGS~P~-~P~IpG~~--~v--~-t---s~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 201 IEGKNILIAVGNKPI-FPDVKGKE--FT--I-S---SDDFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred EECCEEEEecCCCCC-CCCCCCce--eE--E-E---HHHHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 999999999999986 45555421 11 2 1 233332 2348999999999999999999999999999999999
Q ss_pred cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEccCCCCCCchhh--hcC
Q 011267 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE--RVG 317 (489)
Q Consensus 241 ~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~aD~vi~a~G~~p~~~~~~--~~g 317 (489)
++++ .+++++.+.+.+.|++.||++++ ++.+.+++.++++.+. +.+.+ ++++++|.|++++|++|+++++. ..+
T Consensus 271 ~il~-~~d~~i~~~l~~~L~~~GV~i~~-~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~ 347 (561)
T PTZ00058 271 RLLR-KFDETIINELENDMKKNNINIIT-HANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALN 347 (561)
T ss_pred cccc-cCCHHHHHHHHHHHHHCCCEEEe-CCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccc
Confidence 9987 48999999999999999999999 9999999854333332 34434 45799999999999999998763 344
Q ss_pred CeecCCcEEeCCCCCCCCCCeEEeccccccCCc-----------------------cCCccc-ccccHHHHHHHHHHHHH
Q 011267 318 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIK 373 (489)
Q Consensus 318 l~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~~a~ 373 (489)
+..++|+|.||+++||++|+|||+|||+..+.. ..+... .......|..+|+.+|.
T Consensus 348 ~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ 427 (561)
T PTZ00058 348 IKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLAD 427 (561)
T ss_pred eecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHH
Confidence 555567899999999999999999999983221 111111 24456779999999999
Q ss_pred HHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecCCcC--------cEEEE-----------------ccCCCcEE
Q 011267 374 ALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETIEI-----------------GNFDPKIA 426 (489)
Q Consensus 374 ~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--------~~~~~-----------------~~~~~~~~ 426 (489)
||++... ..+..+|.. .|+.+- +..+|.+.. +.+.. +.....+.
T Consensus 428 ni~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 498 (561)
T PTZ00058 428 RLFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYL 498 (561)
T ss_pred HHhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEE
Confidence 9986422 234445543 333221 222332210 00000 01112355
Q ss_pred EEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCCcHHHHHHHHHccC
Q 011267 427 TFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEIARAAL 483 (489)
Q Consensus 427 ~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~ 483 (489)
++.++ +++|+|+++++.++.++... ..++.++.+++ ...++.|||+.|++..++.++
T Consensus 499 Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 499 KLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 55553 59999999877777776655 55678888886 344578999999999988764
No 26
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.9e-40 Score=337.17 Aligned_cols=400 Identities=23% Similarity=0.316 Sum_probs=262.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccCCCC--------CCCCCCCCCCccc-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLFPL--------DKKPARLPGFHTC- 117 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~~~~--------~~~~~~~~~~~~~- 117 (489)
.++||+||||||||++||.+|++.|. +|+|||++..-+ .++ +--+|.++... ......+......
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~ 79 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFD 79 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccC
Confidence 45899999999999999999999986 799999863211 000 00011111000 0000000000000
Q ss_pred ----cCC------CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCCCCC
Q 011267 118 ----VGS------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL 185 (489)
Q Consensus 118 ----~~~------~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g~~~ 185 (489)
... .........++..+++++.+ +...++...-.+...+| .++.||+||||||+.|..+ |+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~~~ 155 (466)
T PRK07818 80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGTSL 155 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCCCC
Confidence 000 00000011122346666654 33333333223443454 3689999999999998643 33322
Q ss_pred -CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCc
Q 011267 186 -PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (489)
Q Consensus 186 -~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv 264 (489)
..+... .+ .+ .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.|+++||
T Consensus 156 ~~~v~~~---~~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 156 SENVVTY---EE--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred CCcEEch---HH--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCC
Confidence 223322 21 11 11235789999999999999999999999999999999999985 799999999999999999
Q ss_pred EEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCC
Q 011267 265 KFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 337 (489)
Q Consensus 265 ~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 337 (489)
++++ +++|++++.+ ++.+ .+.+. +| +++++|.||+|+|++|++++ ++..|++.+ +|+|.||+++||++|+
T Consensus 229 ~i~~-~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~ 305 (466)
T PRK07818 229 KILT-GTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPH 305 (466)
T ss_pred EEEE-CCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCC
Confidence 9999 9999999753 2222 34443 56 37999999999999999886 678898875 5679999999999999
Q ss_pred eEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC---CCCcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 338 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 338 Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
|||+|||+..+ ..+..|..+|+.+|.||++.... .+..+|.. .|..+- +..+|....
T Consensus 306 IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte~~ 366 (466)
T PRK07818 306 IYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETLELGDYRMMPRA---TFCQPQ------VASFGLTEEQ 366 (466)
T ss_pred EEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE---EECCCC------eEEEeCCHHH
Confidence 99999998642 24556999999999999864322 34445542 221111 334454321
Q ss_pred ------cE--EE-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCC
Q 011267 414 ------ET--IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA 469 (489)
Q Consensus 414 ------~~--~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~ 469 (489)
+. .. .+. ...+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.|
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 445 (466)
T PRK07818 367 AREEGYDVKVAKFPFTANGKAHGLGD-PTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTH 445 (466)
T ss_pred HHhCCCcEEEEEEECCccchhhhcCC-CCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCC
Confidence 00 00 111 1235566554 59999999877777776655 45578888876 3 445789
Q ss_pred CcHHHHHHHHHccCCcc
Q 011267 470 SSVEEALEIARAALPVE 486 (489)
Q Consensus 470 ~~~~e~~~~~~~~~~~~ 486 (489)
||+.|+++.|++.+..+
T Consensus 446 Pt~~e~~~~~~~~~~~~ 462 (466)
T PRK07818 446 PTLSEALKEAFHGLAGH 462 (466)
T ss_pred CchHHHHHHHHHHhhcC
Confidence 99999999999877654
No 27
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-41 Score=345.91 Aligned_cols=334 Identities=20% Similarity=0.215 Sum_probs=243.1
Q ss_pred cccccceeeeeecceec--CCCCCceeee--ccccccccccccccc-------c-ccCCCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVA-------Y-SSFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~-------~-~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
...+||||..|||+|+. +|+++|++.. .++.+....|+..++ + .+...+.+||+||||||||++||..
T Consensus 79 ~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred HHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 35789999999999997 9999999987 677788888887763 1 1223467899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++..... +..+ .+ ..+++.- .......+++++.++++++++.+
T Consensus 159 l~~~G~---~V~v~e~~~~~GG~---l~~g--ip----~~~l~~~------~~~~~~~~~~~~~gv~i~~~~~v------ 214 (464)
T PRK12831 159 LAKMGY---DVTIFEALHEPGGV---LVYG--IP----EFRLPKE------TVVKKEIENIKKLGVKIETNVVV------ 214 (464)
T ss_pred HHhCCC---eEEEEecCCCCCCe---eeec--CC----CccCCcc------HHHHHHHHHHHHcCCEEEcCCEE------
Confidence 999987 79999987643210 0000 00 0111100 00122346778899999998654
Q ss_pred CCEEEeCCC-eEEeeCcEEecCCC-CCCCCCCCCCCCCCceEeecCHHHHHHHHH--------hhcCCCcEEEECCCHHH
Q 011267 150 KQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG 219 (489)
Q Consensus 150 ~~~v~~~~g-~~i~yd~lvlATG~-~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvViG~G~~g 219 (489)
.+.+.+.+. ..+.||+|+||||+ .|+. +.++|.+.+++++..++.+...+.. ....+++|+|||+|++|
T Consensus 215 ~~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va 293 (464)
T PRK12831 215 GKTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA 293 (464)
T ss_pred CCcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence 123333332 23579999999998 5764 5567877888887665544332221 12467999999999999
Q ss_pred HHHHHHHHhCCCcEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--------
Q 011267 220 MEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-------- 290 (489)
Q Consensus 220 ~e~A~~l~~~g~~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-------- 290 (489)
+|+|..+.++|.+|+++++.+. .++ ... ..+ +.+++.||++++ ++.++++..++++++.+|++.
T Consensus 294 ~d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~-~~~~~~i~~~~~g~v~~v~~~~~~~~~~d 366 (464)
T PRK12831 294 MDAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDL-LTNPVEILGDENGWVKGMKCIKMELGEPD 366 (464)
T ss_pred HHHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEe-cccceEEEecCCCeEEEEEEEEEEecCcC
Confidence 9999999999999999998653 222 111 122 335678999999 999999976556777665542
Q ss_pred ----------CCc--EEEcCEEEEccCCCCCCchhhh-cCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCccCCcc
Q 011267 291 ----------DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 291 ----------~g~--~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
+|+ +++||.||+|+|..|++.++.. .|++.+ +|.+.||++ ++|+.|+|||+|||+..+.
T Consensus 367 ~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~------ 440 (464)
T PRK12831 367 ASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA------ 440 (464)
T ss_pred CCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch------
Confidence 222 6999999999999999888876 688775 467999997 9999999999999986432
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011267 356 ARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 441 ----~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 441 ----TVILAMGAGKKAAKAIDE 458 (464)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 455688999999888753
No 28
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=3.9e-41 Score=360.37 Aligned_cols=346 Identities=21% Similarity=0.256 Sum_probs=246.4
Q ss_pred cccccceeeeeecceecCCCCCceeee--ccccccccccccccc-------c--ccC-CCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-------Y--SSF-ANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~--~~~-~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
+..+||||..|||+|+.+|+.+|+|.. .++++....|+..+. . .+. ..+.++|+||||||||++||..
T Consensus 478 I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 478 IYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred HHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 457999999999999999999999987 788888888887653 1 121 2457899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++..... +. +..+.. +++ .+...+..+++.+.|+++++++.+ .+
T Consensus 558 Lar~G~---~VtV~Ek~~~~GG~---lr--~~IP~~----Rlp-------~evL~~die~l~~~GVe~~~gt~V-di--- 614 (1019)
T PRK09853 558 LARAGH---PVTVFEREENAGGV---VK--NIIPQF----RIP-------AELIQHDIEFVKAHGVKFEFGCSP-DL--- 614 (1019)
T ss_pred HHHcCC---eEEEEecccccCcc---ee--eecccc----ccc-------HHHHHHHHHHHHHcCCEEEeCcee-EE---
Confidence 999987 79999988764211 00 011111 111 000122346777889999998765 22
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEee-cCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHh
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~ 228 (489)
.+++.....||+||||||+.+...+.++|.+ +++... ..+.+..+.......+++|+|||||++|+|+|..+.+
T Consensus 615 ----~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R 689 (1019)
T PRK09853 615 ----TVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689 (1019)
T ss_pred ----EhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence 2233345679999999999854333444432 344322 1122222223334568999999999999999999888
Q ss_pred C-C-CcEEEEccCC-cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE----------------EEEEe
Q 011267 229 W-K-LDTTIIFPEN-HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV----------------AAVKL 289 (489)
Q Consensus 229 ~-g-~~V~lv~~~~-~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v----------------~~v~~ 289 (489)
. | .+|+++.+++ ..++. . .+.+.+.+ +.||+++. +..++++.. ++++ ..+..
T Consensus 690 lgGakeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~-~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~t 760 (1019)
T PRK09853 690 VPGVEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKE-LLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVET 760 (1019)
T ss_pred cCCCceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEe-CCceEEEEc--CCcEEEEEEEeecccCCCceEEeeC
Confidence 7 4 3899999876 33432 2 23344443 47999999 988888862 2322 11223
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
.++++++||.||+|+|.+|++++++..|++.+ +|.+.||++++|+.|+|||+|||+..+. .+..|+.+|
T Consensus 761 g~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qG 830 (1019)
T PRK09853 761 GETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADA 830 (1019)
T ss_pred CCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHH
Confidence 34468999999999999999999999998875 4679999999999999999999986543 455799999
Q ss_pred HHHHHHHhcCCCCCCCcCCceeeecc
Q 011267 369 QHCIKALLSAQTHTYDYLPYFYSRVF 394 (489)
Q Consensus 369 ~~~a~~l~~~~~~~~~~~p~~~~~~~ 394 (489)
+.||.+|++.....+...|++|+..+
T Consensus 831 r~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 831 RRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred HHHHHHHhhhcCCCcccccccccccc
Confidence 99999999765556777777777644
No 29
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.2e-39 Score=335.04 Aligned_cols=400 Identities=20% Similarity=0.283 Sum_probs=272.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCC------------C-------CCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL------------D-------KKP 108 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~------------~-------~~~ 108 (489)
++||+|||||++|+.||..+++.|. +|+|||++..-. ...+.-+|.++... . ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 77 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR 77 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence 4689999999999999999999986 799999875211 00111112111000 0 000
Q ss_pred CCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEe----CCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSID----IEKQTLITNSGK--LLKYGSLIVATGCTASRFPE 179 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id----~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~ 179 (489)
.++........ ........+.+++++++++.+ ++..++ ....+|.+.+|. ++.||+||+|||+.|..+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~ 156 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT 156 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC
Confidence 00000000000 000011234456779999986 666633 333455556665 79999999999999864432
Q ss_pred CCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHH
Q 011267 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259 (489)
Q Consensus 180 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l 259 (489)
++...+.+++..++.+. ...+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. ++++..+.+.+.|
T Consensus 157 -~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L 228 (466)
T PRK07845 157 -AEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVF 228 (466)
T ss_pred -CCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHH
Confidence 22223345444333221 134689999999999999999999999999999999999985 7999999999999
Q ss_pred HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
+++||++++ ++++++++..+ +.+ .+.+.+|+++++|.|++++|++|++++ ++++|++.+ +|+|.||+++||+.|
T Consensus 229 ~~~gV~i~~-~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~ 305 (466)
T PRK07845 229 ARRGMTVLK-RSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVP 305 (466)
T ss_pred HHCCcEEEc-CCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCC
Confidence 999999999 99999997543 333 467778889999999999999999986 688899876 467999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
||||+|||+..+. .+..|..+|..++.++++.... .+..+|. ..|..+- +..+|....
T Consensus 306 ~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~ 366 (466)
T PRK07845 306 GIYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAA 366 (466)
T ss_pred CEEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHH
Confidence 9999999997432 4566999999999999864322 2333443 3332211 233343211
Q ss_pred ------c--EE-----------EEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCC
Q 011267 414 ------E--TI-----------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA 469 (489)
Q Consensus 414 ------~--~~-----------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~ 469 (489)
+ .. ..+. ...+.++.++ +++|+|++++..++.++... ..++.++.+++ . ..++.|
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 445 (466)
T PRK07845 367 IDSGEVPARTVMLPLATNPRAKMSGL-RDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVY 445 (466)
T ss_pred HHhCCCceEEEEEecccCchhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCC
Confidence 0 00 0111 1235666553 59999999877777776655 45678888886 3 445789
Q ss_pred CcHHHHHHHHHccCCc
Q 011267 470 SSVEEALEIARAALPV 485 (489)
Q Consensus 470 ~~~~e~~~~~~~~~~~ 485 (489)
||+.|++..+++.+..
T Consensus 446 Pt~~e~~~~~~~~~~~ 461 (466)
T PRK07845 446 PSLSGSITEAARRLMA 461 (466)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999887654
No 30
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.7e-41 Score=345.19 Aligned_cols=332 Identities=21% Similarity=0.220 Sum_probs=243.1
Q ss_pred cccccceeeeeecceec--CCCCCceeee------ccccccccccccccc---------cccCCCCCCcEEEEcCchHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR------HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAG 64 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl 64 (489)
...+||||..|||+|+. +|+++|++.. .++.+....|+..++ +.+...+.++|+|||||+||+
T Consensus 67 ~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl 146 (449)
T TIGR01316 67 IKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGL 146 (449)
T ss_pred HHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHH
Confidence 35789999999999998 9999998753 577788888777653 112334578999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEE
Q 011267 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVT 144 (489)
Q Consensus 65 ~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 144 (489)
+||..|++.|+ +|+|+|+++..... +..+ .+. .+++. .......+++.+.+++++.+..+
T Consensus 147 ~aA~~l~~~G~---~V~vie~~~~~GG~---l~~g--ip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v- 206 (449)
T TIGR01316 147 ACASELAKAGH---SVTVFEALHKPGGV---VTYG--IPE----FRLPK-------EIVVTEIKTLKKLGVTFRMNFLV- 206 (449)
T ss_pred HHHHHHHHCCC---cEEEEecCCCCCcE---eeec--CCC----ccCCH-------HHHHHHHHHHHhCCcEEEeCCcc-
Confidence 99999999987 79999997643211 0000 000 01100 00112335677889999988643
Q ss_pred EEeCCCCEEEeCCCeEEeeCcEEecCCC-CCCCCCCCCCCCCCceEeecCHHHHHHHHHh---------hcCCCcEEEEC
Q 011267 145 SIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALISS---------LEKAKKVVVVG 214 (489)
Q Consensus 145 ~id~~~~~v~~~~g~~i~yd~lvlATG~-~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~---------~~~~~~vvViG 214 (489)
.+.+.+.+. ...||+||+|||+ .|. .+.++|.+.++++...++.+...+... ...+++++|||
T Consensus 207 -----~~~v~~~~~-~~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIG 279 (449)
T TIGR01316 207 -----GKTATLEEL-FSQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIG 279 (449)
T ss_pred -----CCcCCHHHH-HhhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEEC
Confidence 234444433 2479999999998 565 455678777888776554433322211 23568999999
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC----
Q 011267 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---- 290 (489)
Q Consensus 215 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---- 290 (489)
+|++|+|+|..+.++|.+|+++++.++... + ......+.+++.||++++ ++.++++..++++++..|.+.
T Consensus 280 gG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~--~~~~~~~~l~~~GV~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~ 353 (449)
T TIGR01316 280 GGNTAVDSARTALRLGAEVHCLYRRTREDM---T--ARVEEIAHAEEEGVKFHF-LCQPVEIIGDEEGNVRAVKFRKMDC 353 (449)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeecCcccC---C--CCHHHHHHHHhCCCEEEe-ccCcEEEEEcCCCeEEEEEEEEEEe
Confidence 999999999999999999999998764211 1 112233567889999999 999999976556667666553
Q ss_pred -----CC-----------cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCC
Q 011267 291 -----DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353 (489)
Q Consensus 291 -----~g-----------~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~ 353 (489)
+| +++++|.||+|+|..|++.+++.++++.+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 354 ~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~---- 429 (449)
T TIGR01316 354 QEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA---- 429 (449)
T ss_pred cCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH----
Confidence 23 26999999999999999988888898876 5779999999999999999999986432
Q ss_pred cccccccHHHHHHHHHHHHHHHh
Q 011267 354 RTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 354 ~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+.+|+.+|.+|.
T Consensus 430 ------~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 430 ------TVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 55679999999999885
No 31
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.6e-39 Score=340.43 Aligned_cols=397 Identities=19% Similarity=0.256 Sum_probs=268.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCCC------CCCCCCCCCCCccccC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP------LDKKPARLPGFHTCVG 119 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~~------~~~~~~~~~~~~~~~~ 119 (489)
..+|||||||||||++||..|++.|. +|+|||++. ++.. + +--+|.++.. ....... .+......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~-~g~~~~~~ 171 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD-GGIAATVP 171 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhccccc-CCccCCCC
Confidence 46899999999999999999999987 799999873 2111 0 0001111000 0000000 01000000
Q ss_pred CCCC----------------CCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCC
Q 011267 120 SGGE----------------RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK 180 (489)
Q Consensus 120 ~~~~----------------~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~ 180 (489)
.... ......+++. +++++.+ ++..++.....|.+.+|. ++.||+||||||++|. .|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i 249 (561)
T PRK13748 172 TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPI 249 (561)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCC
Confidence 0000 0011223444 7899886 777788776677766663 6999999999999986 4555
Q ss_pred CCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHH
Q 011267 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (489)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~ 260 (489)
+|.+. ..++.+. ........+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++++.+.+.++
T Consensus 250 ~g~~~--~~~~~~~----~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~ 321 (561)
T PRK13748 250 PGLKE--TPYWTST----EALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFR 321 (561)
T ss_pred CCCCc--cceEccH----HHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHH
Confidence 55322 1122211 12222235789999999999999999999999999999885 56664 79999999999999
Q ss_pred hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCC
Q 011267 261 QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 337 (489)
Q Consensus 261 ~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 337 (489)
+.||++++ ++.+++++.+ ++.+ .+.+.++ ++++|.||+|+|++||+++ ++.+|++.+ +|+|.||+++||++||
T Consensus 322 ~~gI~i~~-~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~ 397 (561)
T PRK13748 322 AEGIEVLE-HTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPH 397 (561)
T ss_pred HCCCEEEc-CCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCC
Confidence 99999999 9999999754 3332 3555555 6999999999999999986 578899886 4679999999999999
Q ss_pred eEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 338 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 338 Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
|||+|||+..+. ....|..+|+.+|.||++.. ..+ ...|. ...++.+ +..+|....
T Consensus 398 IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a 457 (561)
T PRK13748 398 IYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGD-AALDLTAMPA--VVFTDPQ-------VATVGYSEAEA 457 (561)
T ss_pred EEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCC-cccCCCCCCe--EEEccCC-------ceeeeCCHHHH
Confidence 999999997543 23358889999999998643 233 33453 2222222 334454321
Q ss_pred -----cE--EE--E--------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCc
Q 011267 414 -----ET--IE--I--------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASS 471 (489)
Q Consensus 414 -----~~--~~--~--------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~ 471 (489)
+. .. . ......+.++.++ +++|+|+++++..+.++... ..++..+.+++ . ..++.|||
T Consensus 458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt 537 (561)
T PRK13748 458 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLT 537 (561)
T ss_pred HHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCc
Confidence 00 00 0 0112346666664 69999999877677776655 45678888886 3 44578999
Q ss_pred HHHHHHHHHccCCc
Q 011267 472 VEEALEIARAALPV 485 (489)
Q Consensus 472 ~~e~~~~~~~~~~~ 485 (489)
+.|+++.|++.+..
T Consensus 538 ~~e~~~~~~~~~~~ 551 (561)
T PRK13748 538 MVEGLKLAAQTFNK 551 (561)
T ss_pred hHHHHHHHHHHhhc
Confidence 99999999976644
No 32
>PLN02546 glutathione reductase
Probab=100.00 E-value=5e-40 Score=340.55 Aligned_cols=394 Identities=20% Similarity=0.249 Sum_probs=270.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCC----CCCCCccccCC-------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPY----ERPALTKGYLF------------- 102 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~---------~~~~y----~~~~l~~~~~~------------- 102 (489)
..++||+|||+|+||+.||..+++.|. +|+|||+. ..+.. ..+--+|.++.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 346899999999999999999999987 79999951 11110 00000111110
Q ss_pred -CCC---CCCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 103 -PLD---KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 103 -~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
... ....++........ ..........+++.+++++.+ ++..+++ ++|.+ +|+++.||+||||||++|.
T Consensus 154 ~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 154 FGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF 229 (558)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC
Confidence 000 00001100000000 000011223345678999986 6777776 45655 6778999999999999986
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.|.++| +... .+++.+......+++++|||+|++|+|+|..|..+|.+|+++++.+++++ .+++++.+.+
T Consensus 230 -~P~IpG-----~~~v---~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l 299 (558)
T PLN02546 230 -IPDIPG-----IEHA---IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFV 299 (558)
T ss_pred -CCCCCC-----hhhc---cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHH
Confidence 455444 2222 23344444344679999999999999999999999999999999999887 4899999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR 332 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~ 332 (489)
.+.|+++||++++ ++.++++...+++.+ .+.+.+++...+|.|++++|++|++++ ++++|++.+ +|+|.||+++|
T Consensus 300 ~~~L~~~GV~i~~-~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~ 377 (558)
T PLN02546 300 AEQMSLRGIEFHT-EESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR 377 (558)
T ss_pred HHHHHHCCcEEEe-CCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce
Confidence 9999999999999 999999975444443 455666655568999999999999986 588899886 46799999999
Q ss_pred CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecC
Q 011267 333 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 410 (489)
Q Consensus 333 t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~ 410 (489)
|++|+|||+|||+..+. .+..|..+|+.+|.||++... ..|..+|+ ..|+.+. +..+|.
T Consensus 378 Ts~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGl 438 (558)
T PLN02546 378 TSVPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGL 438 (558)
T ss_pred eCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccC
Confidence 99999999999996432 345699999999999986432 23455664 3555421 222333
Q ss_pred CcC-------cEE------------EEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhh
Q 011267 411 NVG-------ETI------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL 466 (489)
Q Consensus 411 ~~~-------~~~------------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~ 466 (489)
... +.. ..+.....+.++.++ +++|+|++++..++.++... ..+|.++.+++ . ..+
T Consensus 439 te~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~ 518 (558)
T PLN02546 439 TEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV 518 (558)
T ss_pred CHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 211 000 011112336666553 59999999877788776655 45678888886 3 445
Q ss_pred cCCCcHHHHHHHHH
Q 011267 467 QQASSVEEALEIAR 480 (489)
Q Consensus 467 ~~~~~~~e~~~~~~ 480 (489)
+.|||+.|.+..++
T Consensus 519 ~~hPT~~E~~~~~~ 532 (558)
T PLN02546 519 GIHPTAAEEFVTMR 532 (558)
T ss_pred cCCCChHHHHHHHh
Confidence 78999999998886
No 33
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=331.55 Aligned_cols=308 Identities=20% Similarity=0.267 Sum_probs=237.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
+++++|||||||+||+.+|++|.+. +.+|||||+++++.|. |.++. +...... ...+ ......
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~ 70 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP 70 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence 4678999999999999999999654 4589999999988764 55442 2221111 1111 011234
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEe----------CCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 198 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~----------~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~ 198 (489)
.+...+++++. .+|++||++++.|.+ .+|.+++||+||||||+.+. .+.+||.. +..+.++++.++.
T Consensus 71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~-~~~ipG~~-e~~~~~~~~~~a~ 147 (424)
T PTZ00318 71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN-TFNIPGVE-ERAFFLKEVNHAR 147 (424)
T ss_pred HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC-CCCCCCHH-HcCCCCCCHHHHH
Confidence 45567888887 599999999999888 56778999999999999986 35555542 3455678888877
Q ss_pred HHHHhhc-----------------CCCcEEEECCCHHHHHHHHHHHh--------------CCCcEEEEccCCcchhhhh
Q 011267 199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLF 247 (489)
Q Consensus 199 ~~~~~~~-----------------~~~~vvViG~G~~g~e~A~~l~~--------------~g~~V~lv~~~~~~l~~~~ 247 (489)
++++.+. ..++++|||+|++|+|+|..|.. .+.+|+++++.+++++ .+
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~ 226 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SF 226 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cC
Confidence 7655431 12489999999999999999875 3688999999999998 58
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEE
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQ 326 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~ 326 (489)
++.+.+.+.+.|++.||++++ +++|+++..+ .|.+++|+++++|.+|+++|.+|+ ++++.++++.+ +|+|.
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~-~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~ 298 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRT-KTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRIS 298 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEe-CCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEE
Confidence 999999999999999999999 9999999732 477889999999999999999998 68888888875 57899
Q ss_pred eCCCCC-CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCcee
Q 011267 327 VDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 390 (489)
Q Consensus 327 vd~~~~-t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~ 390 (489)
||+++| +++|||||+|||+..+.... ..++..|..||..+|+||.+.........||.|
T Consensus 299 Vd~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 299 VDDHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred eCCCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 999999 59999999999998653211 235677999999999999753222113455544
No 34
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.3e-38 Score=324.72 Aligned_cols=399 Identities=18% Similarity=0.209 Sum_probs=265.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCCC-------CCCCCCCC----CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP-------LDKKPARL----PG 113 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~~-------~~~~~~~~----~~ 113 (489)
..++|++|||+|+||+++|..|++.|. +|++||+++..... + +--++.++.. .......+ +.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 346899999999999999999999986 79999987432211 0 1011111000 00000000 00
Q ss_pred C--ccccC------CCCC-CCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCCC
Q 011267 114 F--HTCVG------SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 114 ~--~~~~~------~~~~-~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~ 181 (489)
+ ..... .... ......++.. +++++.+ ++.-++.....|.+.+|. ++.||+||||||+.|. .|.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCC
Confidence 0 00000 0000 0112233333 7888876 455566555566666663 6999999999999986 45555
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|..... ++.+ .+.+. ....+++++|||+|++|+|+|..|.++|.+|+++++. ++++. +++++.+.+.+.+++
T Consensus 169 G~~~~~--~~~~---~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~ 240 (479)
T PRK14727 169 GLMDTP--YWTS---TEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEK 240 (479)
T ss_pred CcCccc--eecc---hHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHh
Confidence 532111 1211 11121 1234689999999999999999999999999999875 66664 799999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCe
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 338 (489)
.||++++ ++++++++..++ .+ .+.+.++ ++++|.||+|+|++||+++ ++.+|++.+ +|+|.||+++||++|+|
T Consensus 241 ~GV~i~~-~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~I 316 (479)
T PRK14727 241 EGIEVLN-NTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDI 316 (479)
T ss_pred CCCEEEc-CcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCE
Confidence 9999999 999999975432 22 3555555 6999999999999999986 577888876 56799999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcCc--
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-- 414 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-- 414 (489)
||+|||+..+. ....|..+|+.+|.||++.. ..+ ...|+ ...++.+ +..+|....+
T Consensus 317 yA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~ 376 (479)
T PRK14727 317 YAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGN-ATLDLSAMPA--VIFTDPQ-------VATVGLSEAKAH 376 (479)
T ss_pred EEeeecCCcch----------hhhHHHHHHHHHHHHHcCCC-cccccccCCc--EEEecCc-------eeeeeCCHHHHH
Confidence 99999997543 23358889999999998643 333 33453 2222221 3444543210
Q ss_pred -----E--EE----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcH
Q 011267 415 -----T--IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV 472 (489)
Q Consensus 415 -----~--~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~ 472 (489)
. .. .......+.+++++ +++|+|++++..++.++... ..++..+.+++ . ...+.|||+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 456 (479)
T PRK14727 377 LSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTM 456 (479)
T ss_pred HcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCCh
Confidence 0 00 01011235666654 59999999877777776655 45678888876 3 445789999
Q ss_pred HHHHHHHHccCC
Q 011267 473 EEALEIARAALP 484 (489)
Q Consensus 473 ~e~~~~~~~~~~ 484 (489)
+|++..|++.+.
T Consensus 457 ~E~~~~~~~~~~ 468 (479)
T PRK14727 457 VEGLKLCAQTFR 468 (479)
T ss_pred HHHHHHHHHhhh
Confidence 999999997553
No 35
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=2.5e-38 Score=323.46 Aligned_cols=393 Identities=20% Similarity=0.260 Sum_probs=266.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccC--------------CCC--CCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYL--------------FPL--DKKPARL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~--------------~~~--~~~~~~~ 111 (489)
++|+||||||++|.+||.. +.|. +|+|||++..-. +.-+--+|.++ +.. .....++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 3799999999999998865 4464 799999864211 11111112111 000 0000111
Q ss_pred CCCcccc---CCCCCC-CChhH-HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 112 PGFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 112 ~~~~~~~---~~~~~~-~~~~~-~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
....... -..... ....+ +++.|++++.+ ++..+ +.++|.+.+|+++.||+||||||++|. .|..++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~ 151 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGV 151 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCc
Confidence 0000000 000001 12233 56789999987 44444 568888888888999999999999996 4555553322
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
.+ .+.++...+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+ +.||++
T Consensus 152 ~~---~~~~~~~~l---~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-~~d~~~~~~l~~l~-~~~v~i 223 (451)
T PRK07846 152 RY---HTSDTIMRL---PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELA-SKRWDV 223 (451)
T ss_pred cE---EchHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHH-hcCeEE
Confidence 22 223333332 23578999999999999999999999999999999999987 47999988887655 568999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh--hhcCCeec-CCcEEeCCCCCCCCCCeEEecc
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD 343 (489)
++ ++++++++.++ +.+ .+.+.+|+++++|.|++|+|++|+++++ +.++++.+ +|+|.||+++||++|||||+||
T Consensus 224 ~~-~~~v~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD 300 (451)
T PRK07846 224 RL-GRNVVGVSQDG-SGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGD 300 (451)
T ss_pred Ee-CCEEEEEEEcC-CEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEee
Confidence 99 99999997543 333 4677788899999999999999999884 67888885 5679999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC-------
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 413 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------- 413 (489)
|+..+. ....|..+|+.++.||++... ..+..+|+. .|..+- +..+|....
T Consensus 301 ~~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p~------ia~vGlte~~a~~~g~ 361 (451)
T PRK07846 301 VSSPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAA---VFTHPQ------IASVGLTENEARAAGL 361 (451)
T ss_pred cCCCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE---EECCCC------cEeEeCCHHHHHhcCC
Confidence 997532 234588999999999986422 234455653 232211 334443321
Q ss_pred cEEE-------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-hhh--hcCCCcHHH
Q 011267 414 ETIE-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEE 474 (489)
Q Consensus 414 ~~~~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~e 474 (489)
+... .++ ...+.++.++ +++|+|++++..++.++... ..+|.++.+++ ... ...|||+.|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~-~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e 440 (451)
T PRK07846 362 DITVKVQNYGDVAYGWAMED-TTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPE 440 (451)
T ss_pred CEEEEEEecCcchhhhhCCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHH
Confidence 0000 111 1235566554 59999999877777776655 45678888886 443 368999999
Q ss_pred HHHHHHccC
Q 011267 475 ALEIARAAL 483 (489)
Q Consensus 475 ~~~~~~~~~ 483 (489)
+++.|++.+
T Consensus 441 ~~~~a~~~~ 449 (451)
T PRK07846 441 VVENALLGL 449 (451)
T ss_pred HHHHHHHhc
Confidence 999998754
No 36
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=3.3e-38 Score=322.20 Aligned_cols=371 Identities=20% Similarity=0.305 Sum_probs=274.1
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCC-ChhHHHHCCcEEEeCCcE
Q 011267 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ-TPEWYKEKGIEMIYQDPV 143 (489)
Q Consensus 65 ~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~V 143 (489)
+||++|++.+. +.+|||||+++.+.|....++. +..........+ ... ..+++.+.+++++++++|
T Consensus 1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V 67 (427)
T TIGR03385 1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV 67 (427)
T ss_pred CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence 47899998764 7799999999987665434432 211110100000 112 234568899999888999
Q ss_pred EEEeCCCCEEEeCC---CeEEe--eCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh--cCCCcEEEECCC
Q 011267 144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG 216 (489)
Q Consensus 144 ~~id~~~~~v~~~~---g~~i~--yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvViG~G 216 (489)
+.+|++.+++.+.+ +.++. ||+||||||++|. .|..+|.+.++++.+++..++..++..+ ..+++++|||+|
T Consensus 68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~-~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI-VPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 99999888887753 45677 9999999999987 4556776567788888888888877766 457899999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEE
Q 011267 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296 (489)
Q Consensus 217 ~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~ 296 (489)
++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++ ++.|+++.. ++.+ +.+.+|++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~--~~~~--v~~~~g~~i~ 221 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRL-NEEVDSIEG--EERV--KVFTSGGVYQ 221 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEe-CCEEEEEec--CCCE--EEEcCCCEEE
Confidence 9999999999999999999999988854467889999999999999999999 999999974 3333 4667888999
Q ss_pred cCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 297 ADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 297 aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
+|.+|+++|.+|++++++.++++.+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||+.+|+||
T Consensus 222 ~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni 301 (427)
T TIGR03385 222 ADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENI 301 (427)
T ss_pred eCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHh
Confidence 9999999999999999999999876 577999999999999999999999876554443333447778999999999999
Q ss_pred hcCCCCCCCcC-CceeeecccccCCCcceeeeeecCCcCc---------EEEEcc---------CCCcEEEEEEE--CCE
Q 011267 376 LSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIGN---------FDPKIATFWID--SGK 434 (489)
Q Consensus 376 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~G~~~~~---------~~~~~~---------~~~~~~~~~~~--~~~ 434 (489)
.+. ...|... +..+...++.+ +..+|....+ ...... ....+.++.++ +++
T Consensus 302 ~g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ 373 (427)
T TIGR03385 302 AGN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRR 373 (427)
T ss_pred cCC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCe
Confidence 864 3445432 23334444432 5566653220 111110 01125666664 599
Q ss_pred EEEEEeccCC-HHHhHHH-HHHHhcCCCCC
Q 011267 435 LKGVLVESGS-PEEFQLL-PTLARSQPFVD 462 (489)
Q Consensus 435 ~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~ 462 (489)
|+|+++++.+ +.++... ..++.++.+++
T Consensus 374 ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~ 403 (427)
T TIGR03385 374 ILGAQAVGKEGADKRIDVLAAAIMAGLTVK 403 (427)
T ss_pred EEEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence 9999986666 6665544 55677887765
No 37
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.3e-39 Score=329.02 Aligned_cols=394 Identities=19% Similarity=0.249 Sum_probs=263.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCCC----CCCCCccccCCCC-------CCCC-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAPY----ERPALTKGYLFPL-------DKKP- 108 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~--------~~~~y----~~~~l~~~~~~~~-------~~~~- 108 (489)
.++||+|||||++|..||..+++. |. +|+|||++ ..+.- .-+--+|.++... ....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999996 65 79999974 11111 1111112111000 0000
Q ss_pred ----------CCCCCCccccC---CCCCCCChhHHHH-CCcEEEeCCcEEEEeCCCCEEEeCC--------CeEEeeCcE
Q 011267 109 ----------ARLPGFHTCVG---SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL 166 (489)
Q Consensus 109 ----------~~~~~~~~~~~---~~~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~~v~~~~--------g~~i~yd~l 166 (489)
.++........ ........+++++ .+++++.+ +..-++ .++|...+ .+++.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G-~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLG-WGALED--KNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE-EEEEcc--CCEEEEeeccCCCCCcceEEECCEE
Confidence 00000000000 0000011123444 48999987 443333 45665531 247999999
Q ss_pred EecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcch
Q 011267 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL 243 (489)
Q Consensus 167 vlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l 243 (489)
|||||++|. .|.++|.+ .+ .+..+. ......+++++|||+|++|+|+|..+..+ |.+|+++++.++++
T Consensus 156 IIATGs~p~-~p~i~G~~--~~---~~~~~~---~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 156 LLATGSWPQ-MLGIPGIE--HC---ISSNEA---FYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred EEecCCCCC-CCCCCChh--he---echhhh---hccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 999999986 45444421 12 222222 22224578999999999999999877655 89999999999999
Q ss_pred hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec
Q 011267 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS 321 (489)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~ 321 (489)
+ .+++++.+.+.+.|++.||++++ ++.++++...+++. ..+.+.+|+++++|.|++++|++|++++ ++.++++.+
T Consensus 227 ~-~~d~~~~~~l~~~L~~~GI~i~~-~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~ 303 (486)
T TIGR01423 227 R-GFDSTLRKELTKQLRANGINIMT-NENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303 (486)
T ss_pred c-ccCHHHHHHHHHHHHHcCCEEEc-CCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceEC
Confidence 7 48999999999999999999999 99999998543332 3567778889999999999999999986 467888875
Q ss_pred -CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccC
Q 011267 322 -VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEG 398 (489)
Q Consensus 322 -~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~ 398 (489)
+|.|.||+++||++|||||+|||+..+. ....|..+|+.++.||++.... .+..+|. ..|..+-
T Consensus 304 ~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe 370 (486)
T TIGR01423 304 KKGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP 370 (486)
T ss_pred CCCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc
Confidence 5679999999999999999999986432 3344899999999999864322 2334554 3343321
Q ss_pred CCcceeeeeecCCcCc-------EE-E-----------EccC-CCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHH
Q 011267 399 SPRKVWWQFFGDNVGE-------TI-E-----------IGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLA 455 (489)
Q Consensus 399 ~~~~~~~~~~G~~~~~-------~~-~-----------~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~ 455 (489)
+..+|....+ .. . .+.. ...+.++.++ +++|+|++++..++.++... ..++
T Consensus 371 ------ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai 444 (486)
T TIGR01423 371 ------IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICL 444 (486)
T ss_pred ------eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 2334432210 00 0 0111 1235566553 58999999877777776655 4567
Q ss_pred hcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 456 RSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 456 ~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
..+.+++ . ..++.|||++|++..+.
T Consensus 445 ~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 445 KLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred HcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 8888886 3 44588999999999986
No 38
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=9.9e-39 Score=326.83 Aligned_cols=393 Identities=17% Similarity=0.205 Sum_probs=260.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-ccccCCCCCCCCCCCCCCcccc---CCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTCV---GSG 121 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~-~y~---~~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~ 121 (489)
+++|||||||||||++||..|++.|. +|+|||+++.. ... +.-. ++.++.... ...++....... ...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAAE-KNLSFEQVMATKNTVTSR 77 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999986 79999998632 111 0001 111111100 000110000000 000
Q ss_pred CCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC---CeEEeeCcEEecCCCCCCCCCCCCCC-CCCceEeecCHHHH
Q 011267 122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA 197 (489)
Q Consensus 122 ~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~---g~~i~yd~lvlATG~~~~~~p~~~g~-~~~gv~~~~~~~~~ 197 (489)
......+.+.+.+++++.+ ++..+ +.++|.+.+ ..++.||+||||||++|.. |.++|. +.+++++ +
T Consensus 78 ~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~ 147 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------S 147 (438)
T ss_pred HHHHHHHHHHhCCCEEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------h
Confidence 0011224456778998876 34333 456665543 2468999999999999874 555553 2333332 2
Q ss_pred HHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 198 ~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
..+......+++++|||+|++|+|+|..+++.|.+|+++++.++++++ +++++.+.+.+.+++.||++++ +++|++++
T Consensus 148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~-~~~V~~i~ 225 (438)
T PRK07251 148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLL-NAHTTEVK 225 (438)
T ss_pred HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEc-CCEEEEEE
Confidence 333333345789999999999999999999999999999999999885 6889999999999999999999 99999998
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
.+ ++.+ .+. .+|+++++|.+|+|+|.+|+++. ++..++..+ +|++.||+++||+.|||||+|||+..+.
T Consensus 226 ~~-~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~----- 297 (438)
T PRK07251 226 ND-GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ----- 297 (438)
T ss_pred ec-CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-----
Confidence 53 3333 233 45678999999999999999876 455677664 4679999999999999999999996433
Q ss_pred ccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC-------cE----EEEc-
Q 011267 355 TARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET----IEIG- 419 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~----~~~~- 419 (489)
....|..+++.++.++++... ..+..+|.. ..++.+ +..+|.... +. ....
T Consensus 298 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~ 363 (438)
T PRK07251 298 -----FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAA 363 (438)
T ss_pred -----cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCc
Confidence 122377788888888876432 122334542 222221 333443211 00 0000
Q ss_pred -------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 420 -------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 420 -------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
.....+.++.++ +++|+|+++++.++.++... ..++.++.+++ . ..++.|||+.|++..+-
T Consensus 364 ~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 364 MPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred chhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 001225566553 59999999877777776655 45578888876 2 44578999999998764
No 39
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=8.7e-39 Score=335.01 Aligned_cols=320 Identities=19% Similarity=0.269 Sum_probs=223.1
Q ss_pred cEEEeCCcEEEEeCCCCEEEe-CCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEE
Q 011267 135 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (489)
Q Consensus 135 i~~~~~~~V~~id~~~~~v~~-~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVi 213 (489)
++++.+ ...-++ .++|.. .+|+++.||+||||||+.|.. |...+.+.+.+++. .++..+. ..+++++||
T Consensus 249 v~vi~G-~a~f~~--~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l~---~lpk~VvIV 318 (659)
T PTZ00153 249 VQVIYE-RGHIVD--KNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKLE---GLQNYMGIV 318 (659)
T ss_pred eEEEEe-EEEEec--CCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhhh---hcCCceEEE
Confidence 566654 322222 344544 367789999999999999973 43333223344433 3333332 247899999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHH-HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-
Q 011267 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKVGASIKNLEAGSDGRVAAVKLED- 291 (489)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l-~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~- 291 (489)
|+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ ++.||++++ ++.|++++..+++....+.+.+
T Consensus 319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~-~~~V~~I~~~~~~~~v~v~~~~~ 396 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHL-NTLIEYVRAGKGNQPVIIGHSER 396 (659)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEc-CCEEEEEEecCCceEEEEEEecc
Confidence 99999999999999999999999999999984 8999999988875 679999999 9999999854433322343321
Q ss_pred ------C--------cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCC------CCCeEEeccccccCC
Q 011267 292 ------G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPL 349 (489)
Q Consensus 292 ------g--------~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~Iya~GD~a~~~~ 349 (489)
+ +++++|.|++|+|++||++. ++..+++.++|+|.||++|||+ +|+|||+|||+..+.
T Consensus 397 ~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~ 476 (659)
T PTZ00153 397 QTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM 476 (659)
T ss_pred ccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc
Confidence 1 37999999999999999987 4778888777779999999997 699999999985321
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhcCC------------CC--CCCcCCceeeecccccCCCcceeeeeecCCcCc-
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE- 414 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~------------~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~- 414 (489)
....|..||+.++++|.+.. .. .|..+|.. .|..+- +.++|....+
T Consensus 477 ----------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~---ift~Pe------iA~VGlTE~eA 537 (659)
T PTZ00153 477 ----------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV---CYTTPE------LAFIGLTEKEA 537 (659)
T ss_pred ----------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEE---EECcCc------eEEeeCCHHHH
Confidence 33468999999999998642 11 23345541 111110 2223322110
Q ss_pred ---------------------EEEEcc---------------------CCCcEEEEEEE--CCEEEEEEeccCCHHHhHH
Q 011267 415 ---------------------TIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQL 450 (489)
Q Consensus 415 ---------------------~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~ 450 (489)
....++ ....+.++.++ +++|+|++++..++.++..
T Consensus 538 ~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~ 617 (659)
T PTZ00153 538 KELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIH 617 (659)
T ss_pred HhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHH
Confidence 000000 02335666553 5999999987778888776
Q ss_pred HH-HHHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCc
Q 011267 451 LP-TLARSQPFVD-K-AKLQQASSVEEALEIARAALPV 485 (489)
Q Consensus 451 ~~-~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~~~ 485 (489)
.. .+|..+.+++ . ..++.|||+.|.+..|++++.+
T Consensus 618 ~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~ 655 (659)
T PTZ00153 618 EGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAG 655 (659)
T ss_pred HHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHh
Confidence 64 4568888886 3 4457899999999999988753
No 40
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=3.7e-38 Score=325.18 Aligned_cols=401 Identities=20% Similarity=0.275 Sum_probs=268.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-ccccCCCCC-------CCCCCC----CCC-
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPLD-------KKPARL----PGF- 114 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~~~l-~~~~~~~~~-------~~~~~~----~~~- 114 (489)
.+||+|||||+||++||.+|++.|. +|+|||+ +...-. +.-. ++.++.... .....+ ..+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 76 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD 76 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC---eEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence 3899999999999999999999886 7999998 332211 1000 111110000 000000 000
Q ss_pred -ccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC-eEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 115 -HTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 115 -~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g-~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
..... .........++++.+++++.+ ++..++.....+...+| .++.||+||+|||+.|..+| .+ ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~ 153 (461)
T TIGR01350 77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCC
Confidence 00000 000001123445678999886 56666655545555554 47999999999999987433 22 1122
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
+. .+.+..+. ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 154 ~~-~~~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 154 GE-VVITSTGA---LNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred Cc-eEEcchHH---hccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEE
Confidence 22 12222333 222235789999999999999999999999999999999999884 88999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCc--hhhhcCCeec-CCcEEeCCCCCCCCCCeEEe
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAI 341 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~ 341 (489)
++ +++|++++.+ ++.+ .+.+.+| +++++|.+|+|+|.+|+++ +++..++..+ +|.+.||+++||+.|+|||+
T Consensus 229 ~~-~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~Iyai 305 (461)
T TIGR01350 229 LT-NTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAI 305 (461)
T ss_pred Ee-CCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEe
Confidence 99 9999999754 3333 3566666 4799999999999999998 6788898886 46799999999999999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC------
Q 011267 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 413 (489)
Q Consensus 342 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------ 413 (489)
|||+..+. ....|..+|+.+|.+|.+.....+ ...|.. ..++.. +..+|....
T Consensus 306 GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g 366 (461)
T TIGR01350 306 GDVIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAG 366 (461)
T ss_pred eecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCC
Confidence 99996432 455699999999999986432233 334432 222211 223333211
Q ss_pred -cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCCcHHHH
Q 011267 414 -ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEA 475 (489)
Q Consensus 414 -~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~e~ 475 (489)
+. ... .+....+.++.++ +++|+|++++..++.++... ..++.++.+++ ...+..+|++.|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~ 446 (461)
T TIGR01350 367 YDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEA 446 (461)
T ss_pred CCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHH
Confidence 00 000 0111235565554 59999999877777776655 45678888886 2346789999999
Q ss_pred HHHHHccCCc
Q 011267 476 LEIARAALPV 485 (489)
Q Consensus 476 ~~~~~~~~~~ 485 (489)
++.+++++..
T Consensus 447 ~~~~~~~~~~ 456 (461)
T TIGR01350 447 IKEAALAALG 456 (461)
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 41
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.3e-37 Score=320.06 Aligned_cols=396 Identities=20% Similarity=0.230 Sum_probs=261.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC--------CCC---C-CCCCccccCCC-----CCCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY--------APY---E-RPALTKGYLFP-----LDKKPARLPG 113 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~--------~~y---~-~~~l~~~~~~~-----~~~~~~~~~~ 113 (489)
++|+||||+|+||+.||..+++.|. +|++||+... ... + -+--+|.++.. .......+ +
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence 4799999999999999999999986 7999996311 110 0 01011111100 00000000 0
Q ss_pred Ccccc--CCC--------------CCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCC
Q 011267 114 FHTCV--GSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 114 ~~~~~--~~~--------------~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~ 175 (489)
+.... ..+ .......+++..+++++.+ +..-+++..-.|...+| .++.||+||||||++|.
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPR 156 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCC
Confidence 00000 000 0011123456779999886 55556654323332333 36999999999999986
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.|.++|.. + ... +.+.+......+++++|||+|++|+|+|..|+++|.+|+++++ +++++ .+++++++.+
T Consensus 157 -~p~ipG~~-~---~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~~l 226 (484)
T TIGR01438 157 -YPGIPGAK-E---LCI---TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCANKV 226 (484)
T ss_pred -CCCCCCcc-c---eee---cHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHHHH
Confidence 45445431 1 111 2333333334568999999999999999999999999999987 46776 5899999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEccCCCCCCch--hhhcCCeec--CCcEEeC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVD 328 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~vd 328 (489)
.+.|++.||++++ ++.++++...+ +. ..+.+.++ +++++|.|++|+|++||+++ ++..|++.+ +|+|.||
T Consensus 227 ~~~L~~~gV~i~~-~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd 303 (484)
T TIGR01438 227 GEHMEEHGVKFKR-QFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD 303 (484)
T ss_pred HHHHHHcCCEEEe-CceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC
Confidence 9999999999999 99999987543 33 24566555 37999999999999999987 578888875 3679999
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeee
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQ 406 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~ 406 (489)
+++||+.|+|||+|||+.... .....|..+|+.+|+||++... ..|..+|+. .|..+- +.
T Consensus 304 ~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p~------ia 365 (484)
T TIGR01438 304 EEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPLE------YG 365 (484)
T ss_pred CCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCCc------ee
Confidence 999999999999999996321 1345589999999999986432 234555543 232221 23
Q ss_pred eecCCcC---------cE-EEEccC-------------CCcEEEEEE-E--CCEEEEEEeccCCHHHhHHH-HHHHhcCC
Q 011267 407 FFGDNVG---------ET-IEIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQLL-PTLARSQP 459 (489)
Q Consensus 407 ~~G~~~~---------~~-~~~~~~-------------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~ 459 (489)
.+|.... .. +....+ ...+.++.+ + +++|+|++++..++.++... ..+|.++.
T Consensus 366 ~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~ 445 (484)
T TIGR01438 366 ACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGL 445 (484)
T ss_pred eecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCC
Confidence 3443211 00 000000 123455543 2 58999999877777776655 45678888
Q ss_pred CCC-h-hhhcCCCcHHHHHHHHHcc
Q 011267 460 FVD-K-AKLQQASSVEEALEIARAA 482 (489)
Q Consensus 460 ~~~-~-~~~~~~~~~~e~~~~~~~~ 482 (489)
+++ . ..++.|||+.|++..++..
T Consensus 446 t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 446 TKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred CHHHHhhhhcCCCChHHHHHHhhhh
Confidence 876 3 3457899999999999865
No 42
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.3e-37 Score=318.58 Aligned_cols=317 Identities=23% Similarity=0.303 Sum_probs=231.1
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEE
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV 212 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV 212 (489)
.+++++.+..+. . +.++|.+.+|.++.||+||||||++|.. |...+ ..++. +.+..+...+. ..+++++|
T Consensus 105 ~gv~~~~g~~~~-~--~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l~---~~~k~vvV 174 (452)
T TIGR03452 105 PNIDVYDGHARF-V--GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRLP---ELPESLVI 174 (452)
T ss_pred CCeEEEEEEEEE-e--cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhhh---hcCCcEEE
Confidence 799999875433 2 5688888888889999999999999864 43222 22333 23444444432 34789999
Q ss_pred ECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC
Q 011267 213 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG 292 (489)
Q Consensus 213 iG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g 292 (489)
||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ +.||++++ +++|++++.++ +.+ .+.+.+|
T Consensus 175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~-~~~V~~i~~~~-~~v-~v~~~~g 249 (452)
T TIGR03452 175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRL-GRNVTAVEQDG-DGV-TLTLDDG 249 (452)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEe-CCEEEEEEEcC-CeE-EEEEcCC
Confidence 999999999999999999999999999998874 7999988887755 46899999 99999998543 333 4667788
Q ss_pred cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 293 STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
+++++|.|++++|++|++++ ++.+|++.+ +|+|.||+++||++|+|||+|||+..+. ....|..+|+
T Consensus 250 ~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~ 319 (452)
T TIGR03452 250 STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEAR 319 (452)
T ss_pred CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHH
Confidence 89999999999999999987 567888885 4679999999999999999999997432 2234889999
Q ss_pred HHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC-------cE-EEEc-----------cCCCcEEE
Q 011267 370 HCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET-IEIG-----------NFDPKIAT 427 (489)
Q Consensus 370 ~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~-~~~~-----------~~~~~~~~ 427 (489)
.+|.||++... ..+..+|.. .|..+- +..+|.... +. +..- .....+.+
T Consensus 320 ~~a~ni~~~~~~~~~~~~~~p~~---i~t~p~------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~K 390 (452)
T TIGR03452 320 VVKHNLLHPNDLRKMPHDFVPSA---VFTHPQ------IATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCK 390 (452)
T ss_pred HHHHHhcCCCCcccCCCCCCCeE---EECCCC------eeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEE
Confidence 99999986432 233445643 222110 333443321 00 0000 01123556
Q ss_pred EEEE--CCEEEEEEeccCCHHHhHHHH-HHHhcCCCCC-hhh--hcCCCcHHHHHHHHHccC
Q 011267 428 FWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-KAK--LQQASSVEEALEIARAAL 483 (489)
Q Consensus 428 ~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~e~~~~~~~~~ 483 (489)
+.++ +++|+|++++..++.++.... .++.++.+++ ... ++.|||+.|+++.|++++
T Consensus 391 lv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 452 (452)
T TIGR03452 391 LIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence 6553 699999998777777766554 4578888886 433 468999999999998764
No 43
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.1e-38 Score=323.54 Aligned_cols=397 Identities=18% Similarity=0.223 Sum_probs=264.6
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCC--------------CC----CCCCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLF--------------PL----DKKPARL 111 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~--------------~~----~~~~~~~ 111 (489)
+|||||||+||++||..+++.|. +|+|||+++... ...+--+|.++. .. .....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 79999999999999999999886 799999875321 011111121110 00 0000000
Q ss_pred CCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC-eEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g-~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
........ ..........+++.+++++.+ ++..++.....|...++ .++.||+||||||++|..+| .++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~ 156 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence 00000000 000001122345668999886 66667765555655555 46999999999999987444 33322222
Q ss_pred eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
+... .........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.+++.||+++
T Consensus 157 v~~~------~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 157 IINS------KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred EEcc------hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEE
Confidence 3222 222232335789999999999999999999999999999999999885 789999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCCCCCeEEecc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD 343 (489)
+ +++|++++.+ +..+ .+.. +| +++++|.||+|+|.+|+++. ++..|++.+++++.||+++||+.|||||+||
T Consensus 230 ~-~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD 305 (458)
T PRK06912 230 T-GAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGD 305 (458)
T ss_pred E-CCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEee
Confidence 9 9999999743 2222 2332 34 36999999999999999875 4677888776679999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC-------cE
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET 415 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~ 415 (489)
|+..+. ....|..+|+.+|.++.+... ..+..+|.. .|..+- +..+|.... +.
T Consensus 306 ~~~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p~------~a~vGlte~~a~~~g~~~ 366 (458)
T PRK06912 306 VIGGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRC---IYTSPE------IASVGLTEKQAREQYGDI 366 (458)
T ss_pred cCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeE---EecCch------hEEeeCCHHHHHHCCCCe
Confidence 996322 345699999999999986432 123445542 121110 223333211 00
Q ss_pred EE-------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011267 416 IE-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 477 (489)
Q Consensus 416 ~~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~ 477 (489)
.. .+. ...+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.|||+.|+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 445 (458)
T PRK06912 367 RIGEFPFTANGKALIIGE-QTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIH 445 (458)
T ss_pred EEEEEecCcchhHhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHH
Confidence 00 111 1235666554 58999999877777776654 45678888876 2 44678999999999
Q ss_pred HHHccCCc
Q 011267 478 IARAALPV 485 (489)
Q Consensus 478 ~~~~~~~~ 485 (489)
.|++.+..
T Consensus 446 ~~~~~~~~ 453 (458)
T PRK06912 446 EALLQAVG 453 (458)
T ss_pred HHHHHhhc
Confidence 99876543
No 44
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.4e-38 Score=324.41 Aligned_cols=397 Identities=20% Similarity=0.269 Sum_probs=261.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCC----------------CCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF----------------PLDKKP 108 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~----------------~~~~~~ 108 (489)
|+++||||||||+||++||..|++.|. +|+|||++. .... .+-.+|.++. ......
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~ 76 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPK 76 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 356999999999999999999999986 799999843 2211 1111111110 000000
Q ss_pred CCCCCCccccC---CCCCCCC-hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~-~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~ 184 (489)
.++........ ....... ...++..+++++.+ ++..++. +.+.+ ++.++.||+||+|||+. .|.++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~ 149 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVW 149 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCc
Confidence 00000000000 0000001 12234457777764 4444444 45555 67789999999999998 23333321
Q ss_pred ---CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 185 ---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 185 ---~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
...+++ .+........+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 150 ~~~~~~~~~------~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~ 222 (460)
T PRK06292 150 LILGDRLLT------SDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK 222 (460)
T ss_pred ccCCCcEEC------chHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh
Confidence 122222 2222222245789999999999999999999999999999999999884 899999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
. |++++ ++++++++.+++..+ .+++.++ +++++|.|++++|.+|+++. ++.++++.+ +|.|.||+++||+.|
T Consensus 223 ~-I~i~~-~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~ 299 (460)
T PRK06292 223 E-FKIKL-GAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVP 299 (460)
T ss_pred c-cEEEc-CCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCC
Confidence 9 99999 999999975432122 2333333 57999999999999999984 678888876 566999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
+|||+|||+..+. ....|..+|+.+|.||++.... .+..+|+ ..|..+. +..+|.+..
T Consensus 300 ~IyA~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~---~~~~~~~------~a~vG~te~~ 360 (460)
T PRK06292 300 GIYAAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPS---VVFTDPQ------IASVGLTEEE 360 (460)
T ss_pred CEEEEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCe---EEECCCc------cEEeECCHHH
Confidence 9999999997432 3456999999999999863222 2334553 2232111 334444321
Q ss_pred ------cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCC
Q 011267 414 ------ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQAS 470 (489)
Q Consensus 414 ------~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~ 470 (489)
+. ... . +....+.++.++ +++|+|++++..++.++... ..+|.++.+++ ....+.||
T Consensus 361 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP 440 (460)
T PRK06292 361 LKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHP 440 (460)
T ss_pred HHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCC
Confidence 00 000 0 012235666554 48999999877777776555 55678888886 34457899
Q ss_pred cHHHHHHHHHccCCc
Q 011267 471 SVEEALEIARAALPV 485 (489)
Q Consensus 471 ~~~e~~~~~~~~~~~ 485 (489)
|+.|++..+++++..
T Consensus 441 t~~e~~~~~~~~~~~ 455 (460)
T PRK06292 441 TLSEGLRTALRDLFS 455 (460)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887654
No 45
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2e-37 Score=319.70 Aligned_cols=401 Identities=18% Similarity=0.274 Sum_probs=266.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCC---CCCCC-ccccCCC-----CCC---CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPY---ERPAL-TKGYLFP-----LDK---KPARL 111 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~------~~~~y---~~~~l-~~~~~~~-----~~~---~~~~~ 111 (489)
..+|++|||||+||++||.++++.|. +|+|||+. ..... ++.-. ++.++.. ... ....+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 46899999999999999999999986 79999971 11110 00000 1111000 000 00000
Q ss_pred C--C----CccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeC--CCCEEEeC--CCeEEeeCcEEecCCCCCC
Q 011267 112 P--G----FHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 112 ~--~----~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~--~~~~v~~~--~g~~i~yd~lvlATG~~~~ 175 (489)
. . +..... .........+++..+++++.+ ++..++. +.++|.+. ++.++.||+||||||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR 158 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence 0 0 000000 000001123345578998875 5666663 34667664 3467999999999999986
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.+|..+ .++...+. .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+
T Consensus 159 ~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~ 230 (475)
T PRK06327 159 HLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEA 230 (475)
T ss_pred CCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHH
Confidence 444322 22222221 2222222235789999999999999999999999999999999998884 789999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD 328 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd 328 (489)
.+.+++.||++++ +++|++++.++ +.+ .+.+.+ | +++++|.+++++|.+|++++ ++.++++.+ +|++.||
T Consensus 231 ~~~l~~~gi~i~~-~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd 307 (475)
T PRK06327 231 AKAFTKQGLDIHL-GVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD 307 (475)
T ss_pred HHHHHHcCcEEEe-CcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC
Confidence 9999999999999 99999998543 333 355443 3 46999999999999999984 577888875 5679999
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeee
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQF 407 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~ 407 (489)
+++||+.|+|||+|||+..+. ....|..+|..+|.+|++... ..|..+|+.. |..+. +..
T Consensus 308 ~~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~---~~~pe------~a~ 368 (475)
T PRK06327 308 DHCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI---YTSPE------IAW 368 (475)
T ss_pred CCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---eCCcc------eEE
Confidence 999999999999999997432 345689999999999986332 2344455432 22111 333
Q ss_pred ecCCcCc-------E--EE-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h
Q 011267 408 FGDNVGE-------T--IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K 463 (489)
Q Consensus 408 ~G~~~~~-------~--~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 463 (489)
+|....+ . .. .+. ...+.++.++ +++|+|++++..++.++... ..+|.++.+++ .
T Consensus 369 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 447 (475)
T PRK06327 369 VGKTEQQLKAEGVEYKAGKFPFMANGRALAMGE-PDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDI 447 (475)
T ss_pred EeCCHHHHHHcCCCEEEEEEcccccchhhhcCC-CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 4433210 0 00 111 1235666553 59999999877777776655 45678888886 3
Q ss_pred -hhhcCCCcHHHHHHHHHccCCc
Q 011267 464 -AKLQQASSVEEALEIARAALPV 485 (489)
Q Consensus 464 -~~~~~~~~~~e~~~~~~~~~~~ 485 (489)
..++.|||+.|.++.|++.+..
T Consensus 448 ~~~~~~hPt~~e~~~~~~~~~~~ 470 (475)
T PRK06327 448 ARICHAHPTLSEVWHEAALAVDK 470 (475)
T ss_pred hcCCcCCCChHHHHHHHHHHhcc
Confidence 3357899999999999876543
No 46
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=4.1e-37 Score=317.92 Aligned_cols=393 Identities=18% Similarity=0.199 Sum_probs=254.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC----C----CCCC---C-CCCccccCC---------------C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----Y----APYE---R-PALTKGYLF---------------P 103 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~----~----~~y~---~-~~l~~~~~~---------------~ 103 (489)
++||+||||||||++||..++++|. +|+|||+++ . +... + +--+|-++. .
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 6899999999999999999999986 799999632 1 1110 0 000110000 0
Q ss_pred CC-CCCCCCCCCccccCC---CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC---CeEEeeCcEEecCCCCCCC
Q 011267 104 LD-KKPARLPGFHTCVGS---GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 104 ~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~---g~~i~yd~lvlATG~~~~~ 176 (489)
.. ....++..+...... .........++..+++++.+ ++... +.++|.+.+ +..+.||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~~--~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKLK--DEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEEc--cCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 00 000000000000000 00000111223357777765 44333 345665532 3579999999999999874
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~ 256 (489)
++.++|... ...+ .+.+......+++++|||+|++|+|+|..|+++|.+|+++++. .+++ .+++++++.+.
T Consensus 159 p~~i~G~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~ 229 (499)
T PTZ00052 159 PEDVPGAKE----YSIT---SDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVV 229 (499)
T ss_pred CCCCCCccc----eeec---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHH
Confidence 323444321 1112 2333333345789999999999999999999999999999874 6665 58999999999
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh--hhcCCeec-CCcEEeCCCCCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRT 333 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t 333 (489)
+.|++.||++++ ++.++++...+ +. ..+.+.+|+++++|.|++++|++||++++ +.++++.+ +|.+.+++. +|
T Consensus 230 ~~l~~~GV~i~~-~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T 305 (499)
T PTZ00052 230 EYMKEQGTLFLE-GVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT 305 (499)
T ss_pred HHHHHcCCEEEc-CCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC
Confidence 999999999999 99999997543 33 35777888899999999999999999875 67888886 456677766 99
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCC
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 411 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~ 411 (489)
+.|+|||+|||+.... ..+..|..+|+.+|.||++.... .+..+|+. .|..+- +..+|..
T Consensus 306 s~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlt 367 (499)
T PTZ00052 306 NIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYS 367 (499)
T ss_pred CCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCC
Confidence 9999999999996321 24567999999999999864322 33444543 232211 2223321
Q ss_pred cC---------cE-EE-----------------E----cc-----CCCcEEEEEE-E--CCEEEEEEeccCCHHHhHHHH
Q 011267 412 VG---------ET-IE-----------------I----GN-----FDPKIATFWI-D--SGKLKGVLVESGSPEEFQLLP 452 (489)
Q Consensus 412 ~~---------~~-~~-----------------~----~~-----~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~~ 452 (489)
.. .. +. . +. ....|.++.+ + +++|+|++++..++.++...-
T Consensus 368 e~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~ 447 (499)
T PTZ00052 368 SEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGF 447 (499)
T ss_pred HHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence 10 00 00 0 00 0133556544 3 599999998888888877665
Q ss_pred -HHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 453 -TLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 453 -~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
.++.++.+++ . ..++.|||+.|++..+.
T Consensus 448 ~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~ 478 (499)
T PTZ00052 448 SLALKLGAKKSDFDSMIGIHPTDAEVFMNLS 478 (499)
T ss_pred HHHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence 4568888875 3 44578999999886553
No 47
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3.9e-38 Score=343.04 Aligned_cols=333 Identities=18% Similarity=0.169 Sum_probs=240.1
Q ss_pred cccccceeeeeecceec--CCCCCceeeecccccccccccccccc---------------cc-CCCCCCcEEEEcCchHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVAY---------------SS-FANENREFVIVGGGNAA 63 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~vvIIGgG~AG 63 (489)
...+||||++|||+|+. +|+++|++...++++..+.|+..++. .+ ...+.++|+||||||||
T Consensus 239 i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAG 318 (944)
T PRK12779 239 IESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSG 318 (944)
T ss_pred HHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHH
Confidence 45789999999999999 79999999888888888888776641 11 12357899999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcE
Q 011267 64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV 143 (489)
Q Consensus 64 l~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 143 (489)
|+||..|++.|+ +|||+|+++...- ++.- .-...+++. ....+..+.+++.|++++.+..+
T Consensus 319 LsaA~~Lar~G~---~VtVfE~~~~~GG--------~l~y-GIP~~rlp~-------~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 319 LINAYLLAVEGF---PVTVFEAFHDLGG--------VLRY-GIPEFRLPN-------QLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred HHHHHHHHHCCC---eEEEEeeCCCCCc--------eEEc-cCCCCcChH-------HHHHHHHHHHHhhcCeEEEeEEe
Confidence 999999999988 6999998764321 1110 000111110 00122345677789999987543
Q ss_pred EEEeCCCCEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHHHHHh----------hcCCCcEEE
Q 011267 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVV 212 (489)
Q Consensus 144 ~~id~~~~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~----------~~~~~~vvV 212 (489)
++.+++++.....||+|+||||+. |+ .+.++|.+.+|+++..++.+....... ...+++|+|
T Consensus 380 ------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvV 452 (944)
T PRK12779 380 ------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFV 452 (944)
T ss_pred ------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEE
Confidence 355667666666899999999995 55 456788888998877655544332211 124789999
Q ss_pred ECCCHHHHHHHHHHHhCCCcEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcEEEEEe-
Q 011267 213 VGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRVAAVKL- 289 (489)
Q Consensus 213 iG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~- 289 (489)
||||.+|+++|..+.++|.+|+++.+++. .++ .....+.+ ..+.||++++ +..++++..+++ +++.++.+
T Consensus 453 IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~-a~eeGV~~~~-~~~p~~i~~d~~~~~V~~v~~~ 525 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHH-ALEEGINLAV-LRAPREFIGDDHTHFVTHALLD 525 (944)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHH-HHHCCCEEEe-CcceEEEEecCCCCEEEEEEEE
Confidence 99999999999999999999999988753 222 22233333 3467999999 999999975432 35544432
Q ss_pred --------C--------CC--cEEEcCEEEEccCCCCCCchhh-hcCCeec-CCcEEeCC-CCCCCCCCeEEeccccccC
Q 011267 290 --------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 290 --------~--------~g--~~i~aD~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~ 348 (489)
. +| .+++||.||+|+|..|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+
T Consensus 526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 1 12 3699999999999999865432 3467765 56799997 5899999999999999753
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
. .+..|+.+|+.||.+|..
T Consensus 606 ~----------~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 606 S----------TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred H----------HHHHHHHHHHHHHHHHHH
Confidence 2 345588899999988864
No 48
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.5e-37 Score=308.43 Aligned_cols=293 Identities=22% Similarity=0.323 Sum_probs=228.5
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++. ++.. ......+ .....+++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~-~~~g-~~~~~~~-----------~~~~~~~~~~ 66 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPG-MIAG-HYSLDEI-----------RIDLRRLARQ 66 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhH-HHhe-eCCHHHh-----------cccHHHHHHh
Confidence 59999999999999999976533467999999999988873 2321 2211 1111111 1234567778
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHH----HHHhh---c
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E 205 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~----~~~~~---~ 205 (489)
.+++++.+ +|+.+|+++++|.+.+|+++.||+||||||+.+. .|.++|. .++++.+++.+++.. +.+.. .
T Consensus 67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 89999885 8999999999999999999999999999999987 4555663 455666777766655 33322 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh----CC--CcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~----~g--~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
..++++|||+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++.+...+.+.+++.||++++ ++.++++..
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHE-GAPVTRGPD- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEe-CCeeEEEcC-
Confidence 45799999999999999999975 34 479999 66677764 7888999999999999999999 999999862
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCC-CCCCeEEeccccccCCccCCcccc
Q 011267 280 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTAR 357 (489)
Q Consensus 280 ~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~ 357 (489)
+ .+.+.+|+++++|.+|+|+|.+|+ .++...++..+ +|++.||+++|| ++|||||+|||+..+....
T Consensus 220 -~----~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~----- 288 (364)
T TIGR03169 220 -G----ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR----- 288 (364)
T ss_pred -C----eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----
Confidence 2 467788999999999999999998 56777788765 578999999998 9999999999998654221
Q ss_pred cccHHHHHHHHHHHHHHHhc
Q 011267 358 VEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 358 ~~~~~~A~~~g~~~a~~l~~ 377 (489)
......|..||+.+|+||..
T Consensus 289 ~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 289 PKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CCchHHHHHhHHHHHHHHHH
Confidence 22445689999999999864
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=4.7e-38 Score=322.98 Aligned_cols=332 Identities=23% Similarity=0.247 Sum_probs=230.7
Q ss_pred cccccceeeeeecceecC--CCCCceeee--cccccccccccccccc--------ccCCCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
...+||||..|||+|+.+ |+..|.+.. .++++....++..++. .+.....++|+|||||+||+++|..
T Consensus 79 ~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~ 158 (457)
T PRK11749 79 ILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHR 158 (457)
T ss_pred HHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHH
Confidence 357899999999999998 999999865 4556666665544431 2223456899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++...-. +. +-.+....+.. ......+++++.+++++.++.+.
T Consensus 159 l~~~g~---~V~lie~~~~~gG~---l~--~gip~~~~~~~-----------~~~~~~~~l~~~gv~~~~~~~v~----- 214 (457)
T PRK11749 159 LARKGY---DVTIFEARDKAGGL---LR--YGIPEFRLPKD-----------IVDREVERLLKLGVEIRTNTEVG----- 214 (457)
T ss_pred HHhCCC---eEEEEccCCCCCcE---ee--ccCCCccCCHH-----------HHHHHHHHHHHcCCEEEeCCEEC-----
Confidence 999986 79999988653210 00 00010000000 01223456778899999876541
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHH---HhhcCCCcEEEECCCHHHHHHHHHH
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAA 226 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvViG~G~~g~e~A~~l 226 (489)
+.+.+.+.. +.||+||+|||+.....+.++|.+.++++...++....... ..+..+++++|||+|.+|+|+|..+
T Consensus 215 -~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l 292 (457)
T PRK11749 215 -RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTA 292 (457)
T ss_pred -CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHH
Confidence 223333333 68999999999863223455666666766543222221110 1123579999999999999999999
Q ss_pred HhCCC-cEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--------------
Q 011267 227 VGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-------------- 290 (489)
Q Consensus 227 ~~~g~-~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-------------- 290 (489)
.+.|. +|+++++.+. .++. . ....+.+++.||++++ ++.++++..++ +.+.+|++.
T Consensus 293 ~~~G~~~Vtlv~~~~~~~~~~--~----~~~~~~~~~~GV~i~~-~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~ 364 (457)
T PRK11749 293 KRLGAESVTIVYRRGREEMPA--S----EEEVEHAKEEGVEFEW-LAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRR 364 (457)
T ss_pred HHcCCCeEEEeeecCcccCCC--C----HHHHHHHHHCCCEEEe-cCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcc
Confidence 99998 8999998754 2321 1 1234567889999999 99999997543 332334331
Q ss_pred -----CCcEEEcCEEEEccCCCCCCchhh-hcCCeec-CCcEEeCC-CCCCCCCCeEEeccccccCCccCCcccccccHH
Q 011267 291 -----DGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 362 (489)
Q Consensus 291 -----~g~~i~aD~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 362 (489)
+++++++|.||+++|.+|+..++. ..++..+ +|++.||+ +++|+.|+|||+|||+..+ ..+.
T Consensus 365 ~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~ 434 (457)
T PRK11749 365 VPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVV 434 (457)
T ss_pred cCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHH
Confidence 234799999999999999977764 4567665 57899998 8999999999999999532 1456
Q ss_pred HHHHHHHHHHHHHhc
Q 011267 363 HARQSAQHCIKALLS 377 (489)
Q Consensus 363 ~A~~~g~~~a~~l~~ 377 (489)
.|+.+|+.+|.+|..
T Consensus 435 ~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 435 WAVGDGKDAAEAIHE 449 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999988864
No 50
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=8.7e-38 Score=338.45 Aligned_cols=333 Identities=21% Similarity=0.250 Sum_probs=241.0
Q ss_pred cccccceeeeeecceec--CCCCCceeee---cccccccccccccccc---------ccCCCCCCcEEEEcCchHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAA 67 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~aA 67 (489)
...+||||.+|||+|+. +|.++|.+.. .++++....|+..+.. .+.....++|+||||||||++||
T Consensus 368 ~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA 447 (752)
T PRK12778 368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFA 447 (752)
T ss_pred HHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHH
Confidence 45789999999999997 8999999976 3577777877776531 11134578999999999999999
Q ss_pred HHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEe
Q 011267 68 RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSID 147 (489)
Q Consensus 68 ~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id 147 (489)
..|++.|+ +|+|+|+++...-. +..+ .+ ..+++. ....+..+++.+.+++++.++.+
T Consensus 448 ~~l~~~G~---~V~v~e~~~~~GG~---l~~g--ip----~~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v---- 504 (752)
T PRK12778 448 GDLAKRGY---DVTVFEALHEIGGV---LKYG--IP----EFRLPK-------KIVDVEIENLKKLGVKFETDVIV---- 504 (752)
T ss_pred HHHHHCCC---eEEEEecCCCCCCe---eeec--CC----CCCCCH-------HHHHHHHHHHHHCCCEEECCCEE----
Confidence 99999987 79999986543210 1000 01 011110 00122345677889999987543
Q ss_pred CCCCEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHHHHH--------hhcCCCcEEEECCCHH
Q 011267 148 IEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYI 218 (489)
Q Consensus 148 ~~~~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvViG~G~~ 218 (489)
.+.+++++.....||+||||||+. |+ .+.++|.+.+++++..++.....+.. ....+++|+|||||++
T Consensus 505 --~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 581 (752)
T PRK12778 505 --GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT 581 (752)
T ss_pred --CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH
Confidence 234445554456799999999984 65 45567877888877655444332221 1235689999999999
Q ss_pred HHHHHHHHHhCCCc-EEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------
Q 011267 219 GMEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------ 290 (489)
Q Consensus 219 g~e~A~~l~~~g~~-V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------ 290 (489)
|+|+|..+.++|.+ |+++++++. .++. ... .+ +.+++.||++++ ++.++++..++++++.+|++.
T Consensus 582 a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~~-e~-~~~~~~GV~i~~-~~~~~~i~~~~~g~v~~v~~~~~~~~~ 654 (752)
T PRK12778 582 AMDSARTAKRLGAERVTIVYRRSEEEMPA----RLE-EV-KHAKEEGIEFLT-LHNPIEYLADEKGWVKQVVLQKMELGE 654 (752)
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcccCCC----CHH-HH-HHHHHcCCEEEe-cCcceEEEECCCCEEEEEEEEEEEecC
Confidence 99999999999997 999998754 2221 111 12 346788999999 999999976556777666552
Q ss_pred ---CC-----------cEEEcCEEEEccCCCCCCchhhhc-CCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 291 ---DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 291 ---~g-----------~~i~aD~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
+| ++++||.||+|+|..|+..++... +++.+ +|.|.||++++|+.|+|||+|||+..+.
T Consensus 655 ~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~----- 729 (752)
T PRK12778 655 PDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA----- 729 (752)
T ss_pred cCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-----
Confidence 22 259999999999999998776654 77775 4679999999999999999999997432
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 730 -----~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 730 -----TVILAMGDGKRAAAAIDE 747 (752)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 345688999999988853
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=1.5e-37 Score=334.67 Aligned_cols=327 Identities=20% Similarity=0.222 Sum_probs=228.1
Q ss_pred cccccceeeeeecceecCCCCCceeee--cccccccccccccccc------c---cC-CCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SF-ANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~-~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
+..+||||+.|||+|+.+|++.|+|.. .++++....|+..+.. . +. ..+.++|+||||||||++||+.
T Consensus 476 i~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 476 IYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred HHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 457899999999999999999999987 7888888888877631 1 11 2346899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++..... . . +..+.. +++. ....+..+++.+.|++++++...
T Consensus 556 LAr~G~---~VTV~Ek~~~lGG~-l--~--~~IP~~----rlp~-------e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 556 LARAGH---PVTVFEKKEKPGGV-V--K--NIIPEF----RISA-------ESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred HHHCCC---eEEEEecccccCce-e--e--eccccc----CCCH-------HHHHHHHHHHHhcCcEEEEeccc------
Confidence 999987 69999998654211 0 0 011111 1110 00122345667789999887321
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHH---hhcCCCcEEEECCCHHHHHHHHHH
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAA 226 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~---~~~~~~~vvViG~G~~g~e~A~~l 226 (489)
.+.+.+.....||+|+||||+.+...+.++|.. +++. ...+....+.. ....+++|+|||||.+|+|+|..+
T Consensus 611 --d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a 685 (1012)
T TIGR03315 611 --DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAA 685 (1012)
T ss_pred --ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHH
Confidence 122233344679999999999854333444432 2332 22222222221 134689999999999999999998
Q ss_pred HhC-CC-cEEEEccCC-cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE--------------Ee
Q 011267 227 VGW-KL-DTTIIFPEN-HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV--------------KL 289 (489)
Q Consensus 227 ~~~-g~-~V~lv~~~~-~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v--------------~~ 289 (489)
.+. |. +|++++++. ..++. .. +.+.+.+ +.||++++ +..+.++. + +++... ..
T Consensus 686 ~Rl~Ga~kVtLVyRr~~~~Mpa-~~----eEl~~al-eeGVe~~~-~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v 755 (1012)
T TIGR03315 686 LRVPGVEKVTVVYRRTKRYMPA-SR----EELEEAL-EDGVDFKE-LLSPESFE-D--GTLTCEVMKLGEPDASGRRRPV 755 (1012)
T ss_pred HHhCCCceEEEEEccCcccccc-CH----HHHHHHH-HcCCEEEe-CCceEEEE-C--CeEEEEEEEeecccCCCceeee
Confidence 876 75 799999876 33432 22 2334433 57999999 88888886 1 222111 11
Q ss_pred CCC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCccCCcccccccHHHHH
Q 011267 290 EDG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 365 (489)
Q Consensus 290 ~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~ 365 (489)
.+| .+++||.||+|+|..|++++++.+|++.+ +|.+.||++ ++|+.|+|||+|||+..+. .+..|+
T Consensus 756 ~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AI 825 (1012)
T TIGR03315 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAI 825 (1012)
T ss_pred cCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHH
Confidence 123 36999999999999999999999998875 467999986 8999999999999986543 456799
Q ss_pred HHHHHHHHHHhcC
Q 011267 366 QSAQHCIKALLSA 378 (489)
Q Consensus 366 ~~g~~~a~~l~~~ 378 (489)
.+|+.||.+|++.
T Consensus 826 aqGr~AA~nIl~~ 838 (1012)
T TIGR03315 826 ADGRKAANAILSR 838 (1012)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999864
No 52
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=1.2e-37 Score=320.37 Aligned_cols=337 Identities=20% Similarity=0.216 Sum_probs=234.3
Q ss_pred ccccceeeeeecceecCCCCCceeee--cccccccccccccccc------c---cCCCCCCcEEEEcCchHHHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
..+||||..|||+|+.+|+++|+|.. .++++....|+..+.. . +.....++|+|||||+||++||..|+
T Consensus 84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 46899999999999999999999987 7788888888777641 1 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC
Q 011267 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (489)
Q Consensus 72 ~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~ 151 (489)
+.|+ +|+|+|+++..... +..+ .+....+.. ......+++.+.|++++.++.+. .+...
T Consensus 164 ~~G~---~V~vie~~~~~GG~---l~~g--ip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~-~~~~~- 222 (471)
T PRK12810 164 RAGH---KVTVFERADRIGGL---LRYG--IPDFKLEKE-----------VIDRRIELMEAEGIEFRTNVEVG-KDITA- 222 (471)
T ss_pred hCCC---cEEEEecCCCCCce---eeec--CCcccCCHH-----------HHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence 9987 69999998754210 0000 000000000 01223456788899999986542 22111
Q ss_pred EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHH--HHHH------hhcCCCcEEEECCCHHHHHHH
Q 011267 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVA 223 (489)
Q Consensus 152 ~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~--~~~~------~~~~~~~vvViG~G~~g~e~A 223 (489)
+.....||+|++|||+.+...+.++|.+.+++++..++.... .+.. ....+++++|||+|++|+|+|
T Consensus 223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 111257999999999973334556777778877643222111 1111 123578999999999999999
Q ss_pred HHHHhCCC-cEEEEccCCcchhhhhCH----HH-HHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----CC
Q 011267 224 AAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-----DG 292 (489)
Q Consensus 224 ~~l~~~g~-~V~lv~~~~~~l~~~~~~----~~-~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-----~g 292 (489)
..+.+.|. +|++++..+......++. .. .....+.+++.||++++ ++.++++.. +++++..|++. +|
T Consensus 298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~-~~~~~~i~~-~~g~v~~V~~~~~~~~~g 375 (471)
T PRK12810 298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREF-NVQTKEFEG-ENGKVTGVKVVRTELGEG 375 (471)
T ss_pred HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEe-ccCceEEEc-cCCEEEEEEEEEEEecCC
Confidence 99888886 688766554322211010 00 11134567788999999 999999973 45677665532 22
Q ss_pred ---------cEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeC-CCCCCCCCCeEEeccccccCCccCCccccccc
Q 011267 293 ---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 360 (489)
Q Consensus 293 ---------~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~ 360 (489)
+++++|.||+|+|.+|+. .+++.++++.+ +|.+.+| ++++|+.|+|||+|||+..+. .
T Consensus 376 ~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~ 445 (471)
T PRK12810 376 DFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------L 445 (471)
T ss_pred CccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------h
Confidence 479999999999999985 58888888876 5779998 799999999999999997432 3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011267 361 VDHARQSAQHCIKALLS 377 (489)
Q Consensus 361 ~~~A~~~g~~~a~~l~~ 377 (489)
+..|..+|+.||.+|..
T Consensus 446 ~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 446 VVWAIAEGRQAARAIDA 462 (471)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45688889988888753
No 53
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=8.8e-37 Score=335.42 Aligned_cols=333 Identities=18% Similarity=0.210 Sum_probs=235.0
Q ss_pred cccccceeeeeecceec--CCCCCceeee--cccccccccccccccc-----c-c-CCCCCCcEEEEcCchHHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY-----S-S-FANENREFVIVGGGNAAGYAARTF 70 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~-~-~~~~~~~vvIIGgG~AGl~aA~~L 70 (489)
...+||||++|||+|+. +|+++|+++. .++.+..+.|+..++. . + ...+.++|+|||||||||+||..|
T Consensus 370 i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~L 449 (1006)
T PRK12775 370 IYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADL 449 (1006)
T ss_pred HHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 35689999999999998 8999999987 7788888888877652 1 1 123468999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC
Q 011267 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (489)
Q Consensus 71 ~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~ 150 (489)
++.|+ +|+|+|+.+...- .+..+ .+.. +++ .+...+..+++.+.|++++.+..+ .
T Consensus 450 a~~G~---~VtV~E~~~~~GG---~l~~g--ip~~----rl~-------~e~~~~~~~~l~~~Gv~~~~~~~v-g----- 504 (1006)
T PRK12775 450 VKYGV---DVTVYEALHVVGG---VLQYG--IPSF----RLP-------RDIIDREVQRLVDIGVKIETNKVI-G----- 504 (1006)
T ss_pred HHcCC---cEEEEecCCCCcc---eeecc--CCcc----CCC-------HHHHHHHHHHHHHCCCEEEeCCcc-C-----
Confidence 99987 7999998765321 01100 0101 111 001123456778899999988543 1
Q ss_pred CEEEeCCCe-EEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHHHHH---------hhcCCCcEEEECCCHHH
Q 011267 151 QTLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIG 219 (489)
Q Consensus 151 ~~v~~~~g~-~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvViG~G~~g 219 (489)
+.+++.+-. ...||+||||||+. |+ .+.++|.+.+++++..++.+..++.. ....+++|+|||||.+|
T Consensus 505 ~~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA 583 (1006)
T PRK12775 505 KTFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTA 583 (1006)
T ss_pred CccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHH
Confidence 222222111 24699999999995 55 45678877888877655444333211 12357999999999999
Q ss_pred HHHHHHHHhCCCc-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--------
Q 011267 220 MEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-------- 290 (489)
Q Consensus 220 ~e~A~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-------- 290 (489)
+++|..+.++|.+ |+++.++...- ++... .. .+.+++.||++++ ++.++++..++++++.++.+.
T Consensus 584 ~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~-~e-~~~a~eeGI~~~~-~~~p~~i~~~~~G~v~~v~~~~~~l~~~d 657 (1006)
T PRK12775 584 MDCLRVAKRLGAPTVRCVYRRSEAE---APARI-EE-IRHAKEEGIDFFF-LHSPVEIYVDAEGSVRGMKVEEMELGEPD 657 (1006)
T ss_pred HHHHHHHHHcCCCEEEEEeecCccc---CCCCH-HH-HHHHHhCCCEEEe-cCCcEEEEeCCCCeEEEEEEEEEEecccC
Confidence 9999999999985 78887654211 11111 11 2456788999999 999999976556777666542
Q ss_pred ---------CC--cEEEcCEEEEccCCCCCCchhhh-cCCeec-CCcEEeCC-----CCCCCCCCeEEeccccccCCccC
Q 011267 291 ---------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 291 ---------~g--~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~Iya~GD~a~~~~~~~ 352 (489)
+| .+++||.||+|+|..|++.++.. .++..+ +|.|.+|+ +++|++|+|||+||++..+.
T Consensus 658 ~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~--- 734 (1006)
T PRK12775 658 EKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA--- 734 (1006)
T ss_pred CCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc---
Confidence 12 26999999999999999877654 367665 46789996 78999999999999997532
Q ss_pred CcccccccHHHHHHHHHHHHHHHh
Q 011267 353 DRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+.+|+.||.+|.
T Consensus 735 -------~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 735 -------TVILAMGAGRRAARSIA 751 (1006)
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 34457778888877764
No 54
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=1.8e-36 Score=310.52 Aligned_cols=332 Identities=19% Similarity=0.197 Sum_probs=236.4
Q ss_pred ccccceeeeeeccee--cCCCCCceeee--ccccccccccccccccc---------cCCCCCCcEEEEcCchHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
..+||||..|||+|+ .+|+++|+|.. .++++....|+..++.. +...+.++|+|||||++|++||..
T Consensus 80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 568999999999999 49999999986 77888888888776511 112356799999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+++|+++.... ++.. .....+++ ........+++++.|+++++++++..
T Consensus 160 l~~~G~---~V~i~e~~~~~gG--------~l~~-gip~~~~~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 216 (467)
T TIGR01318 160 LARAGV---QVVVFDRHPEIGG--------LLTF-GIPSFKLD-------KAVLSRRREIFTAMGIEFHLNCEVGR---- 216 (467)
T ss_pred HHHcCC---eEEEEecCCCCCc--------eeee-cCccccCC-------HHHHHHHHHHHHHCCCEEECCCEeCC----
Confidence 999987 6999998865321 1100 00000110 00012234677889999999876521
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH--HHHHHh---------hcCCCcEEEECCCHH
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALISS---------LEKAKKVVVVGGGYI 218 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~--~~~~~~---------~~~~~~vvViG~G~~ 218 (489)
.+.+.+ ....||+||+|||+.+...+.++|.+.+++++..++... ..+... ...+++++|||+|++
T Consensus 217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 122211 124799999999998754455678788888764322211 111100 124689999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------
Q 011267 219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------ 290 (489)
Q Consensus 219 g~e~A~~l~~~g~-~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------ 290 (489)
|+++|..+.++|. +|+++++++.. ++. .+. ..+.+++.||++++ ++.++++..++++++.+|++.
T Consensus 294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~-----e~~~~~~~GV~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~~~ 366 (467)
T TIGR01318 294 AMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR-----EVANAREEGVEFLF-NVQPVYIECDEDGRVTGVGLVRTALGE 366 (467)
T ss_pred HHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH-----HHHHHHhcCCEEEe-cCCcEEEEECCCCeEEEEEEEEEEecc
Confidence 9999999999996 79999987653 332 222 22446788999999 999999975555666655441
Q ss_pred ---C-----------CcEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeC----CCCCCCCCCeEEeccccccCCc
Q 011267 291 ---D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLK 350 (489)
Q Consensus 291 ---~-----------g~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~Iya~GD~a~~~~~ 350 (489)
+ .++++||.||+++|.+|+. .+++..+++.+ +|++.|| .+++|+.|+|||+|||+..+.
T Consensus 367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~- 445 (467)
T TIGR01318 367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD- 445 (467)
T ss_pred cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc-
Confidence 1 1369999999999999984 56777888776 5679999 688999999999999987432
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 351 MYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 351 ~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.+|.+|..
T Consensus 446 ---------~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 446 ---------LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred ---------HHHHHHHHHHHHHHHHHH
Confidence 345689999999998863
No 55
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=322.66 Aligned_cols=333 Identities=22% Similarity=0.259 Sum_probs=229.8
Q ss_pred cccccceeeeeecceecCCCCCceeee--ccccccccccccccc---------cccCCCCCCcEEEEcCchHHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAARTF 70 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (489)
...+||||..|||+|+.+|+..|++.. .++.+....|+..++ +.+...+.++|+|||||+||++||..|
T Consensus 133 ~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 133 IKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred HHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 356899999999999999999999976 556677777776643 111233568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC
Q 011267 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (489)
Q Consensus 71 ~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~ 150 (489)
++.|+ +|+|+|+++..... +..+ .+ ..+++. .......+.+.+.|+++++++.+ .++
T Consensus 213 a~~G~---~Vtv~e~~~~~GG~---l~~g--ip----~~~~~~-------~~~~~~~~~l~~~Gv~i~~~~~v-~~d--- 269 (652)
T PRK12814 213 LRKGH---DVTIFDANEQAGGM---MRYG--IP----RFRLPE-------SVIDADIAPLRAMGAEFRFNTVF-GRD--- 269 (652)
T ss_pred HHCCC---cEEEEecCCCCCce---eeec--CC----CCCCCH-------HHHHHHHHHHHHcCCEEEeCCcc-cCc---
Confidence 99987 69999998764211 1000 01 001110 00112245567789999987543 222
Q ss_pred CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCC
Q 011267 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (489)
Q Consensus 151 ~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g 230 (489)
+.+.+. ...||+|++|||+.+...+.++|.+.++++...++............+++++|||+|++|+|+|..+.++|
T Consensus 270 --v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~G 346 (652)
T PRK12814 270 --ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLG 346 (652)
T ss_pred --cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 222221 13599999999998643455677667776543222111111112346899999999999999999999999
Q ss_pred C-cEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC-cEEEEEeC---------------CC
Q 011267 231 L-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLE---------------DG 292 (489)
Q Consensus 231 ~-~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~---------------~g 292 (489)
. +|++++++++ .++. .+. .+.+. .+.||++++ ++.++++...+++ .+..+.+. +|
T Consensus 347 a~~Vtlv~r~~~~~mpa-~~~----ei~~a-~~eGV~i~~-~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g 419 (652)
T PRK12814 347 AESVTILYRRTREEMPA-NRA----EIEEA-LAEGVSLRE-LAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEG 419 (652)
T ss_pred CCeEEEeeecCcccCCC-CHH----HHHHH-HHcCCcEEe-ccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCC
Confidence 7 5999998764 3442 222 23333 357999999 9999998753322 12222221 12
Q ss_pred --cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCC-CCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 293 --STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 293 --~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
.++++|.||+++|..|++++++..|+..+ +|.+.||+ +++|+.|+|||+||++..+. .+..|..+|
T Consensus 420 ~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G 489 (652)
T PRK12814 420 SEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQG 489 (652)
T ss_pred ceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHH
Confidence 25999999999999999999988888876 47799997 68999999999999986432 455688889
Q ss_pred HHHHHHHhc
Q 011267 369 QHCIKALLS 377 (489)
Q Consensus 369 ~~~a~~l~~ 377 (489)
+.||.+|..
T Consensus 490 ~~AA~~I~~ 498 (652)
T PRK12814 490 KRAAHAIDL 498 (652)
T ss_pred HHHHHHHHH
Confidence 888888753
No 56
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=5.6e-36 Score=319.55 Aligned_cols=333 Identities=20% Similarity=0.221 Sum_probs=235.0
Q ss_pred cccccceeeeeecceec--CCCCCceeee--cccccccccccccccc-----cc----CCCCCCcEEEEcCchHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY-----SS----FANENREFVIVGGGNAAGYAAR 68 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~----~~~~~~~vvIIGgG~AGl~aA~ 68 (489)
...+||||++|||+|+. +|+++|+++. .++.+..+.|+..+.. .+ ...+.++|+|||||||||+||.
T Consensus 265 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~ 344 (654)
T PRK12769 265 SHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACAD 344 (654)
T ss_pred HHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHH
Confidence 45789999999999995 8999999987 7888888888877652 11 1235689999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeC
Q 011267 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (489)
Q Consensus 69 ~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~ 148 (489)
.|++.|+ +|+|+|+++..... +..+ .+. .+++ .....+..+++++.|++++.++.|.
T Consensus 345 ~L~~~G~---~V~V~E~~~~~GG~---l~~g--ip~----~~l~-------~~~~~~~~~~~~~~Gv~~~~~~~v~---- 401 (654)
T PRK12769 345 VLARNGV---AVTVYDRHPEIGGL---LTFG--IPA----FKLD-------KSLLARRREIFSAMGIEFELNCEVG---- 401 (654)
T ss_pred HHHHCCC---eEEEEecCCCCCce---eeec--CCC----ccCC-------HHHHHHHHHHHHHCCeEEECCCEeC----
Confidence 9999987 69999987653211 1000 010 1110 0001223466778899999886552
Q ss_pred CCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHH--HHHHHHHh---------hcCCCcEEEECCCH
Q 011267 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALISS---------LEKAKKVVVVGGGY 217 (489)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~--~~~~~~~~---------~~~~~~vvViG~G~ 217 (489)
..+.+.+. ...||+|++|||+.....+.+++.+.+|++...++. ..+.+... ...+++++|||+|.
T Consensus 402 --~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 478 (654)
T PRK12769 402 --KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD 478 (654)
T ss_pred --CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence 11111111 137999999999875433455677778876432111 11111110 12468999999999
Q ss_pred HHHHHHHHHHhCCC-cEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----
Q 011267 218 IGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE----- 290 (489)
Q Consensus 218 ~g~e~A~~l~~~g~-~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~----- 290 (489)
+|+++|..+.++|. +|+++++++.. ++. .+ ...+.+++.||++++ ++.++++..++++++.+|++.
T Consensus 479 ~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~-----~e~~~~~~~Gv~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~~ 551 (654)
T PRK12769 479 TAMDCVRTALRHGASNVTCAYRRDEANMPG-SK-----KEVKNAREEGANFEF-NVQPVALELNEQGHVCGIRFLRTRLG 551 (654)
T ss_pred HHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CH-----HHHHHHHHcCCeEEe-ccCcEEEEECCCCeEEEEEEEEEEec
Confidence 99999999999987 69999887643 331 12 223457889999999 999999975556777666541
Q ss_pred ----CC-----------cEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeCC----CCCCCCCCeEEeccccccCC
Q 011267 291 ----DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 291 ----~g-----------~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~ 349 (489)
+| .++++|.||+|+|+.|++ .+++.++++.+ +|.|.||+ +++|+.|+|||+||++..+.
T Consensus 552 ~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~ 631 (654)
T PRK12769 552 EPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD 631 (654)
T ss_pred CcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc
Confidence 22 269999999999999985 57888888876 46789986 48999999999999987543
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 632 ----------~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 632 ----------LVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 445699999999998863
No 57
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=5e-35 Score=272.64 Aligned_cols=403 Identities=21% Similarity=0.357 Sum_probs=275.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCCCC------------------CCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLFPL------------------DKK 107 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~~~------------------~~~ 107 (489)
..+|++|||+||+|..||.+.++.|+ +...||++..+...- +--||.++... ...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 57999999999999999999999998 478888866543110 11112111100 000
Q ss_pred CCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~g 182 (489)
..+++.+..... .....-....+++++++++.+ .-.-+++..-++.-.||. .+.++++++|||+.-.++| |
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P---G 190 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP---G 190 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC---C
Confidence 111111100000 000011123456778888876 445566665566666663 6899999999999643233 4
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
-.+++-.... +...+..-+-+++++|||+|.+|+|++.-+.++|.+||+++..+.+.+. +|.+++..+++.|++.
T Consensus 191 I~IDekkIVS----StgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 191 ITIDEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ 265 (506)
T ss_pred eEecCceEEe----cCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence 3333322221 2222233356899999999999999999999999999999999999985 9999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCC
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR 334 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~ 334 (489)
|++|.+ +++|...+...+|.+ .|.+.+ + ++++||.+++++|++|-+.- +++.|++.| ++.|.||..++|.
T Consensus 266 gikF~l-~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~ 343 (506)
T KOG1335|consen 266 GIKFKL-GTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTK 343 (506)
T ss_pred CceeEe-ccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccccc
Confidence 999999 999999998877754 455543 3 47999999999999999864 678888877 5779999999999
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CCCCCcCCceeeecccccCCCcceeeeeecCCcC
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 413 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~ 413 (489)
+|+||++||+...|+- .| .|..+|-.+...|.++. ...|.-+|. ..|.++- +.++|....
T Consensus 344 vP~i~~IGDv~~gpML--------Ah--kAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEe 404 (506)
T KOG1335|consen 344 VPHIYAIGDVTLGPML--------AH--KAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEE 404 (506)
T ss_pred CCceEEecccCCcchh--------hh--hhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchh
Confidence 9999999999987662 23 37788888888777643 345555663 3444442 223443322
Q ss_pred cE------EEEccC-------------CCcEEEEEE--ECCEEEEEEeccCCHHHhHHHHHH-HhcCCCCCh-hh-hcCC
Q 011267 414 ET------IEIGNF-------------DPKIATFWI--DSGKLKGVLVESGSPEEFQLLPTL-ARSQPFVDK-AK-LQQA 469 (489)
Q Consensus 414 ~~------~~~~~~-------------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~ 469 (489)
+. ...|.+ ...|.++.. ++++++|++++.+++.++..-..| +..+...+. .. -+.|
T Consensus 405 qlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaH 484 (506)
T KOG1335|consen 405 QLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAH 484 (506)
T ss_pred hHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCC
Confidence 10 111111 123555444 469999999988888887766544 566666542 22 3889
Q ss_pred CcHHHHHHHHHccCCc
Q 011267 470 SSVEEALEIARAALPV 485 (489)
Q Consensus 470 ~~~~e~~~~~~~~~~~ 485 (489)
||++|++++|.+++..
T Consensus 485 PTlSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 485 PTLSEAFKEANMAAYD 500 (506)
T ss_pred CcHHHHHHHHHHHhhc
Confidence 9999999999998765
No 58
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=1.8e-35 Score=304.44 Aligned_cols=336 Identities=19% Similarity=0.240 Sum_probs=230.4
Q ss_pred ccccceeeeeecceecCCCCCceeee--cccccccccccccccc------c---cCCCCCCcEEEEcCchHHHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
..+||||..|||+|+.+|++.|+++. .++++....|+..+.. . +.....++|+|||||+||++||..|+
T Consensus 84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 46899999999999999999999987 6777878777765431 1 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC
Q 011267 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (489)
Q Consensus 72 ~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~ 151 (489)
+.|+ +|+|+|+++..... +..+ .+.......+ .....+++++.|++++.++.+. .+...
T Consensus 164 ~~g~---~V~v~e~~~~~gG~---l~~g--ip~~~~~~~~-----------~~~~~~~~~~~Gv~~~~~~~v~-~~~~~- 222 (485)
T TIGR01317 164 RAGH---TVTVFEREDRCGGL---LMYG--IPNMKLDKAI-----------VDRRIDLLSAEGIDFVTNTEIG-VDISA- 222 (485)
T ss_pred HcCC---eEEEEecCCCCCce---eecc--CCCccCCHHH-----------HHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence 9986 69999998753211 0000 0000000000 1223467788999999987653 22111
Q ss_pred EEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHH-HHHHHH---------HhhcCCCcEEEECCCHHHH
Q 011267 152 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA-DADALI---------SSLEKAKKVVVVGGGYIGM 220 (489)
Q Consensus 152 ~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~-~~~~~~---------~~~~~~~~vvViG~G~~g~ 220 (489)
+.....||+|++|||+. |. .+.++|.+.+++++..++. +..... .....+++|+|||+|++|+
T Consensus 223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~ 296 (485)
T TIGR01317 223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA 296 (485)
T ss_pred -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence 11235799999999998 55 4556787788888653322 111111 1113578999999999999
Q ss_pred HHHHHHHhCCC-cEEEEccCCcchhhhhC----H------HHHHHHHHHHHhcCcEE-EEcCceEEEEEeCCCCcEEEEE
Q 011267 221 EVAAAAVGWKL-DTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 221 e~A~~l~~~g~-~V~lv~~~~~~l~~~~~----~------~~~~~l~~~l~~~Gv~~-~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
|+|..+.++|. +|+++++.++.+..... + +......+..+..|+++ ++ ++.+++|..++++++.+++
T Consensus 297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~-~~~~~~i~~~~~g~v~~v~ 375 (485)
T TIGR01317 297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREY-SILTKEFIGDDEGKVTALR 375 (485)
T ss_pred HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEE-ecCcEEEEEcCCCeEEEEE
Confidence 99888887775 79999988765542111 0 11222334444457654 56 7888888754446666665
Q ss_pred e--------CCC-----------cEEEcCEEEEccCCC-CCCchhhhcCCeec-CCcEE-eCCCCCCCCCCeEEeccccc
Q 011267 289 L--------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 289 ~--------~~g-----------~~i~aD~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~Iya~GD~a~ 346 (489)
+ ++| ++++||.||+|+|.. |++.+++.+|++.+ +|.+. +|++++|+.|+|||+|||+.
T Consensus 376 ~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~ 455 (485)
T TIGR01317 376 TVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRR 455 (485)
T ss_pred EEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCC
Confidence 3 133 269999999999996 88889998998865 46674 46789999999999999986
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 347 FPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 347 ~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+. ....|..+|+.||.+|.
T Consensus 456 g~~----------~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 456 GQS----------LIVWAINEGRKAAAAVD 475 (485)
T ss_pred CcH----------HHHHHHHHHHHHHHHHH
Confidence 432 34458888888888875
No 59
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.7e-34 Score=306.70 Aligned_cols=333 Identities=17% Similarity=0.197 Sum_probs=234.2
Q ss_pred cccccceeeeeecceec--CCCCCceeee--ccccccccccccccccc---------cCCCCCCcEEEEcCchHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAAR 68 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~ 68 (489)
...+||||++|||+|+. +|+++|++.. .++++....|+..++.. +...+.++|+|||||+||+++|.
T Consensus 248 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~ 327 (639)
T PRK12809 248 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCAD 327 (639)
T ss_pred HHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHH
Confidence 35789999999999994 8999999986 68888888888776521 11235789999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeC
Q 011267 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (489)
Q Consensus 69 ~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~ 148 (489)
.|++.|+ +|+|+|+++...- ++.- ...+.+++. .......+++++.|+++++++++.
T Consensus 328 ~L~~~G~---~Vtv~e~~~~~GG--------~l~~-gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~---- 384 (639)
T PRK12809 328 ILARAGV---QVDVFDRHPEIGG--------MLTF-GIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIG---- 384 (639)
T ss_pred HHHHcCC---cEEEEeCCCCCCC--------eeec-cCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccC----
Confidence 9999987 6999998875321 1100 000111110 001123467788999999987652
Q ss_pred CCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH--HHHHH---------hhcCCCcEEEECCCH
Q 011267 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGY 217 (489)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvViG~G~ 217 (489)
..+.+.+ ....||++++|||+.+...+.+++.+.+|++...++... ..+.. ....+++++|+|+|.
T Consensus 385 --~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~ 461 (639)
T PRK12809 385 --RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD 461 (639)
T ss_pred --CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence 1122221 124799999999997644455677777787653211110 11110 012468999999999
Q ss_pred HHHHHHHHHHhCCC-cEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---C--
Q 011267 218 IGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---E-- 290 (489)
Q Consensus 218 ~g~e~A~~l~~~g~-~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~-- 290 (489)
+++++|..+.++|. +|+++++++.. ++. ... .+. .+++.||++++ ++.++++..++++++..+.+ .
T Consensus 462 ~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~~ 534 (639)
T PRK12809 462 TTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQF-NVQPQYIACDEDGRLTAVGLIRTAMG 534 (639)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEe-ccCCEEEEECCCCeEEEEEEEEEEec
Confidence 99999999999985 79999987644 332 222 222 35678999999 99999997555666665543 1
Q ss_pred ----CC-----------cEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeCC----CCCCCCCCeEEeccccccCC
Q 011267 291 ----DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 291 ----~g-----------~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~ 349 (489)
+| .++++|.||+|+|..|+. .+++.++++.+ +|.|.+|+ +++|+.|+|||+||++..+.
T Consensus 535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~ 614 (639)
T PRK12809 535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD 614 (639)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch
Confidence 12 369999999999999974 56777888876 46688886 48999999999999987532
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 615 ----------~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 615 ----------LVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 445688999999988863
No 60
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=2e-33 Score=273.95 Aligned_cols=284 Identities=24% Similarity=0.326 Sum_probs=204.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCChhHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (489)
+||+|||||+||++||..|++.|. +|+|||+++... . +... .....+|++.. ..+........+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG-Q-------LTTT--TEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc-c-------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence 589999999999999999999886 699999875211 0 0000 00001111110 00011112334566
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHHHHhhc
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE 205 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~~~~~~ 205 (489)
++++++++. .+|+.+++..+ .+.+.++.++.||+||+|||+.|. .|.++|... .++++..... ....
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~------~~~~ 139 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR-KLGIPGEDEFLGRGVSYCATCD------GPFF 139 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc-cCCCCChhhcCCccEEEeeecC------hhhc
Confidence 788999998 79999998764 566777888999999999999886 344455321 2333322111 1234
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
.+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++ ++.++++..+ +++
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~-~~~v~~i~~~--~~~ 209 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLW-NSTVKEIVGD--NKV 209 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEe-ccEEEEEEcc--CcE
Confidence 578999999999999999999999999999999875532 2 3455667777 999999 9999999843 344
Q ss_pred EEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCccccc
Q 011267 285 AAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358 (489)
Q Consensus 285 ~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~ 358 (489)
..+++. +| +++++|.+|+|+|++|+.++++.+ +..+ +|++.||++++|++|||||+|||+... .
T Consensus 210 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---------~ 279 (300)
T TIGR01292 210 EGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---------Y 279 (300)
T ss_pred EEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcc---------h
Confidence 455542 23 579999999999999999888887 6554 577999999999999999999999742 1
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 011267 359 EHVDHARQSAQHCIKALL 376 (489)
Q Consensus 359 ~~~~~A~~~g~~~a~~l~ 376 (489)
..+..|+.+|+.+|.++.
T Consensus 280 ~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 280 RQAVTAAGDGCIAALSAE 297 (300)
T ss_pred hhhhhhhhhHHHHHHHHH
Confidence 256679999999999886
No 61
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-34 Score=305.17 Aligned_cols=327 Identities=20% Similarity=0.218 Sum_probs=222.1
Q ss_pred ccccceeeeeecceecCCCCCceeee--cccccccccccccccc----------ccCCCCCCcEEEEcCchHHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTF 70 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (489)
..+||||+.|||+|+.+|+++|+++. .++.+....|+..+.. .+...+.++|+|||+|+||+++|..|
T Consensus 223 ~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 223 YKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred HhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHH
Confidence 35899999999999999999999986 4555555555444321 11234578999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC
Q 011267 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (489)
Q Consensus 71 ~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~ 150 (489)
++.|+ +|+|+|+++..... +. +-.+....+..+ ..+..+++++.+++++.++.|.. +
T Consensus 303 ~~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~--- 359 (604)
T PRK13984 303 ATMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D--- 359 (604)
T ss_pred HHCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c---
Confidence 99987 79999988754211 00 000100001000 12234677889999999866531 1
Q ss_pred CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh-------cCCCcEEEECCCHHHHHHH
Q 011267 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVA 223 (489)
Q Consensus 151 ~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~-------~~~~~vvViG~G~~g~e~A 223 (489)
+..++ ....||+||+|||+.+...+.++|.+.++++.. ......+...+ ..+++++|||||++|+|+|
T Consensus 360 --~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a--~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 360 --IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQA--LPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred --CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeH--HHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence 11111 135799999999987433455677666676543 22223232221 2368999999999999999
Q ss_pred HHHHhCCC------cEEEEccC--CcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----
Q 011267 224 AAAVGWKL------DTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE----- 290 (489)
Q Consensus 224 ~~l~~~g~------~V~lv~~~--~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~----- 290 (489)
..+.+++. +|+++... ...++ .... .+.+ +.+.||++++ +..++++.. +++++..|++.
T Consensus 435 ~~l~r~~~~~~g~~~V~v~~~~r~~~~~~----~~~~-e~~~-~~~~GV~i~~-~~~~~~i~~-~~g~v~~v~~~~~~~~ 506 (604)
T PRK13984 435 RSMARLQKMEYGEVNVKVTSLERTFEEMP----ADME-EIEE-GLEEGVVIYP-GWGPMEVVI-ENDKVKGVKFKKCVEV 506 (604)
T ss_pred HHHHhccccccCceEEEEeccccCcccCC----CCHH-HHHH-HHHcCCEEEe-CCCCEEEEc-cCCEEEEEEEEEEeec
Confidence 99998753 67776432 22222 1211 2333 3467999999 998988863 45666655542
Q ss_pred ---C-----------CcEEEcCEEEEccCCCCCCchhhh---cCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCC
Q 011267 291 ---D-----------GSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353 (489)
Q Consensus 291 ---~-----------g~~i~aD~vi~a~G~~p~~~~~~~---~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~ 353 (489)
+ ++++++|.||+|+|++|+++++.. .+++.++|+|.||+++||++|+|||+|||+..+.
T Consensus 507 ~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~---- 582 (604)
T PRK13984 507 FDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD---- 582 (604)
T ss_pred cCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH----
Confidence 1 236999999999999999888753 2355556789999999999999999999997542
Q ss_pred cccccccHHHHHHHHHHHHHHHh
Q 011267 354 RTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 354 ~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
...|..+|+.||.+|.
T Consensus 583 -------~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 583 -------IIHGVADGYWAAEGID 598 (604)
T ss_pred -------HHHHHHHHHHHHHHHH
Confidence 2347888888888875
No 62
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=8.7e-34 Score=294.80 Aligned_cols=269 Identities=25% Similarity=0.372 Sum_probs=195.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~-~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...+||+||||||||++||..|++.|. +++||++... ..+....+.. + .+.+...+........
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~~~-~-----------~~~~~~~~~~l~~~l~ 274 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGIEN-L-----------ISVPYTTGSQLAANLE 274 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCccc-c-----------cccCCCCHHHHHHHHH
Confidence 456899999999999999999999987 6999975311 1111111110 1 1110001111112334
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+++++++++++.+++|..++.+. ..+.+.+|..+.||++|+|||+.++. +.++|.. ..++++..... .
T Consensus 275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~------~ 347 (515)
T TIGR03140 275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCD------G 347 (515)
T ss_pred HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccC------h
Confidence 55677899999998999998765 46677788889999999999998864 4445531 23444332211 1
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSD 281 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~ 281 (489)
....+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++ .||++++ ++.++++.. ++
T Consensus 348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~-~~~v~~i~~-~~ 418 (515)
T TIGR03140 348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILT-SAQTTEIVG-DG 418 (515)
T ss_pred hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEE-CCeeEEEEc-CC
Confidence 234689999999999999999999999999999998876643 2345666766 6999999 999999974 33
Q ss_pred CcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 282 GRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 282 ~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+++..|.+.+ | ++++||.|++++|.+|++++++.. ++.+ +|+|.||+++||++|+|||+|||+..+.
T Consensus 419 ~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 419 DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY 491 (515)
T ss_pred CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCcc
Confidence 5666676653 2 469999999999999999998876 6664 5779999999999999999999998654
No 63
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=4.3e-32 Score=276.62 Aligned_cols=324 Identities=28% Similarity=0.350 Sum_probs=264.9
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHC
Q 011267 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (489)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (489)
++|||+|++|+++|..|++... +.+|+++..++..+|.+++++..+.... .....+. .... +..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~-~~~~~ 66 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGI-ASLEDLR-----------YPPR-FNRAT 66 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhccc-CCHHHhc-----------ccch-hHHhh
Confidence 5899999999999999999876 7899999999999999988876433321 1111111 1112 33577
Q ss_pred CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEE
Q 011267 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVi 213 (489)
++.+..+++|..+|+..+.+.+.+| ++.||+|++|||+++...+ +...+++++++...+.+.+.......++++|+
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv 142 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV 142 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence 9999999999999999999999999 8999999999999987544 55577899999999999888776667999999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEE-EEeCCC
Q 011267 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA-VKLEDG 292 (489)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~-v~~~~g 292 (489)
|+|++|+|+|..++++|++|++++..++++++.+.+.+.+.+.+.+++.||++++ +..+.+++...+..... +...++
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLL-GTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEe-CCceEEEEcccCcceeeEEEEeCC
Confidence 9999999999999999999999999999998643388999999999999999999 99999998543222111 577888
Q ss_pred cEEEcCEEEEccCCCCCCchhhhcC--CeecCCcEEeCCCCCCC-CCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 293 STIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
..+++|.+++++|.+|++.++...+ .....|.+.||++++|+ .++|||+|||+..+....+......+|+.|..+++
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~ 301 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301 (415)
T ss_pred cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence 8999999999999999977777775 44455679999999997 99999999999987655444455778999999999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeeccccc
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYE 397 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~ 397 (489)
.++.++.+. .......++.|.+++++.
T Consensus 302 i~~~~~~~~-~~~~~~~~~~~~~~~~~~ 328 (415)
T COG0446 302 IAAENIAGA-LRIPGLLGTVISDVGDLC 328 (415)
T ss_pred HHHHHhccc-cccccccCceEEEEcCeE
Confidence 999999865 323355778888887753
No 64
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=6.5e-33 Score=272.57 Aligned_cols=273 Identities=20% Similarity=0.283 Sum_probs=191.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (489)
.+.+||+||||||||++||..|++.|+ ++++||.....+.. .... ....+|+... ..+.....+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTTT--------EVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--ecCc--------eECCCCCCCCCCCHHHHHHHHH
Confidence 467899999999999999999999986 58898854321110 0000 0011111100 00000012223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeC-CCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHHh
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~-~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~~ 203 (489)
+....++.+++.+ +|..++.....+.+. +...+.||+||+|||+.|+ .|.++|.+ ..++++.... ...
T Consensus 71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~-~~~i~g~~~~~~~~v~~~~~~------~~~ 142 (321)
T PRK10262 71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACATC------DGF 142 (321)
T ss_pred HHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC-CCCCCCHHHcCCCcEEEeecC------CHH
Confidence 4445567777764 677888766654332 2336899999999999986 45555532 2233333211 122
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
...+++++|||+|.+|+|+|..|++++.+|+++++.+.+. .++.+.+.+.+.+++.||++++ ++.++++..+ ++.
T Consensus 143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~-~~~v~~v~~~-~~~ 217 (321)
T PRK10262 143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHT-NRTLEEVTGD-QMG 217 (321)
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEe-CCEEEEEEcC-Ccc
Confidence 3468999999999999999999999999999999987653 3566778888999999999999 9999999743 334
Q ss_pred EEEEEeCCC------cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCC-----CCCCCCCCeEEeccccccC
Q 011267 284 VAAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 284 v~~v~~~~g------~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Iya~GD~a~~~ 348 (489)
+..|++.++ +++++|.||+++|.+|+..+++. ++..++|+|.||+ +++|++|+|||+|||+..+
T Consensus 218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred EEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence 555665432 37999999999999999887664 5666667899997 7899999999999999643
No 65
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=5.3e-32 Score=281.80 Aligned_cols=269 Identities=23% Similarity=0.330 Sum_probs=195.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...+||+||||||||++||.+|++.|. +++||++....... .+.+ ..+++++...+........
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~ 273 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGGQVLDTMGI------------ENFISVPETEGPKLAAALE 273 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCeeeccCcc------------cccCCCCCCCHHHHHHHHH
Confidence 346899999999999999999999987 69999764111000 0000 0111111111111123345
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC--CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~--~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+.+++++++++.+++|..++.. ...+.+.+|.++.||++|+|||+.++. +.++|.. ..++++....+ .
T Consensus 274 ~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~~------~ 346 (517)
T PRK15317 274 EHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHCD------G 346 (517)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeeccC------c
Confidence 5677889999998899999886 446777888889999999999998864 4445431 23344332111 1
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSD 281 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~ 281 (489)
....+++++|||+|++|+|+|..|...+.+|+++++.+.+.. + ..+.+.+.+ .||++++ ++.++++.. ++
T Consensus 347 ~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~-~~~v~~i~~-~~ 417 (517)
T PRK15317 347 PLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIIT-NAQTTEVTG-DG 417 (517)
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEE-CcEEEEEEc-CC
Confidence 124688999999999999999999999999999998876533 1 344555655 6999999 999999984 34
Q ss_pred CcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 282 GRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 282 ~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+++..+.+.+ | ++++||.+++++|.+|++++++.. +..+ +|+|.||+++||++|+|||+|||+..+.
T Consensus 418 g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 418 DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPY 490 (517)
T ss_pred CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCC
Confidence 5666666643 3 369999999999999999998876 6665 4779999999999999999999998654
No 66
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=6.3e-33 Score=291.72 Aligned_cols=330 Identities=22% Similarity=0.249 Sum_probs=222.7
Q ss_pred cccccceeeeeecceecCCCCCceeee--cccccccccccccccc--------ccCCCCCCcEEEEcCchHHHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
...+||||..|||+|+.+|++.|+|.. .++.++...|+..++. .+.....++|+|||+||+||++|..|+
T Consensus 78 ~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~ 157 (564)
T PRK12771 78 LTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLR 157 (564)
T ss_pred HHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 357899999999999999999999987 5666777777653321 112345679999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcE-EEEeCCC
Q 011267 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEK 150 (489)
Q Consensus 72 ~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V-~~id~~~ 150 (489)
+.|+ +|+++|+++..... +.. -.+ ..+++. +......+++.+.|+++..+..+ ..+..+.
T Consensus 158 ~~G~---~V~v~e~~~~~GG~---l~~--gip----~~~~~~-------~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~ 218 (564)
T PRK12771 158 RMGH---AVTIFEAGPKLGGM---MRY--GIP----AYRLPR-------EVLDAEIQRILDLGVEVRLGVRVGEDITLEQ 218 (564)
T ss_pred HCCC---eEEEEecCCCCCCe---eee--cCC----CccCCH-------HHHHHHHHHHHHCCCEEEeCCEECCcCCHHH
Confidence 9987 69999988764311 000 001 011110 00112234567789998887554 2211110
Q ss_pred CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCC
Q 011267 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (489)
Q Consensus 151 ~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g 230 (489)
....||.+++|||+.......+++....++...-.+............+++++|+|+|.++++.+..+.+++
T Consensus 219 --------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lg 290 (564)
T PRK12771 219 --------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLG 290 (564)
T ss_pred --------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcC
Confidence 112589999999987543334455555555433211111000111234789999999999999999999998
Q ss_pred -CcEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE-----e----CCC-------
Q 011267 231 -LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK-----L----EDG------- 292 (489)
Q Consensus 231 -~~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~-----~----~~g------- 292 (489)
.+|+++.+.+.. ++. .. ..+. ...+.||++++ +..+.++..++++.+ +++ + .+|
T Consensus 291 a~~v~ii~r~~~~~~~~-~~----~~~~-~a~~~GVki~~-~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g 362 (564)
T PRK12771 291 AEEVTIVYRRTREDMPA-HD----EEIE-EALREGVEINW-LRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTG 362 (564)
T ss_pred CCEEEEEEecCcccCCC-CH----HHHH-HHHHcCCEEEe-cCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCC
Confidence 578998887542 221 11 2222 34567999999 999999975444432 322 1 122
Q ss_pred --cEEEcCEEEEccCCCCCCchhhh-cCCeecCCcEEeCC-CCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 293 --STIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 293 --~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
+++++|.||+|+|..|++.++++ .++..++|.+.||+ +++|+.|+|||+||++..+. ++..|..+|
T Consensus 363 ~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G 432 (564)
T PRK12771 363 EEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHG 432 (564)
T ss_pred ceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHH
Confidence 37999999999999999888885 57764467799998 78899999999999986432 456688888
Q ss_pred HHHHHHHh
Q 011267 369 QHCIKALL 376 (489)
Q Consensus 369 ~~~a~~l~ 376 (489)
+.+|.+|.
T Consensus 433 ~~aA~~i~ 440 (564)
T PRK12771 433 KKAARNID 440 (564)
T ss_pred HHHHHHHH
Confidence 88888774
No 67
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.2e-32 Score=248.15 Aligned_cols=392 Identities=22% Similarity=0.330 Sum_probs=261.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----------C----CCCCCCc------cccCCCCC-CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----------P----YERPALT------KGYLFPLD-KK 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----------~----y~~~~l~------~~~~~~~~-~~ 107 (489)
...+|++|||||..|+++|+..++.|. ++.|+|..-.. | |....++ +.|-++.+ ..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 357999999999999999999999976 68888876221 1 1111111 11111110 00
Q ss_pred CCCCCCCccccCCCCCCCChhHHH----HCCcEEEeCCcEEEEeCCCCEEEeCCCeE--EeeCcEEecCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVGSGGERQTPEWYK----EKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~V~~id~~~~~v~~~~g~~--i~yd~lvlATG~~~~~~p~~~ 181 (489)
..++.-+. ........++...|+ +.+++++.+ +..-+++..-+|...||.+ +.+.+++||||++|. .|++|
T Consensus 95 ~fdW~~ik-~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIp 171 (478)
T KOG0405|consen 95 SFDWKVIK-QKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIP 171 (478)
T ss_pred CCcHHHHH-hhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCC
Confidence 01110000 000011112222332 346777775 5566667666788888853 688999999999997 57755
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|.++ - .|++.+.+....+++++|+|+|++++|+|..++.+|.++.++.|.+.+|. .||+.+++.+.+.++.
T Consensus 172 G~E~-----g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~~~~ 242 (478)
T KOG0405|consen 172 GAEL-----G---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEHLEG 242 (478)
T ss_pred chhh-----c---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHHhhh
Confidence 5432 2 23455555556899999999999999999999999999999999999997 5999999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCe
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 338 (489)
+||++|. ++.++++.+..++... +....|..-.+|.++||+|+.|++.- |++.|++.+ +|-|.||++.+|++|+|
T Consensus 243 ~ginvh~-~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I 320 (478)
T KOG0405|consen 243 RGINVHK-NSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSI 320 (478)
T ss_pred cceeecc-cccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCce
Confidence 9999999 9999999987777553 44455655669999999999999863 788999987 46699999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
|++||++.- ++....|...|+..++.+.++. ...|..+|. .+|.++. +..+|....
T Consensus 321 ~avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~EA 381 (478)
T KOG0405|consen 321 WAVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEEEA 381 (478)
T ss_pred EEeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHHHH
Confidence 999999963 3344568889999999998743 234666664 4555542 223333321
Q ss_pred -------cE-EEEccC-----------CCcEEEEEE--ECCEEEEEEeccCCHHHhHH-HHHHHhcCCCC-Ch-hhhcCC
Q 011267 414 -------ET-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFV-DK-AKLQQA 469 (489)
Q Consensus 414 -------~~-~~~~~~-----------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~ 469 (489)
++ +....| +.-+.++.. +++|++|++++..++.++.+ +.-+++.+.+- +. .-+.-|
T Consensus 382 iekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIH 461 (478)
T KOG0405|consen 382 IEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIH 461 (478)
T ss_pred HHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeec
Confidence 11 111111 112233333 56999999987777665443 23344444322 22 223345
Q ss_pred CcHHHHH
Q 011267 470 SSVEEAL 476 (489)
Q Consensus 470 ~~~~e~~ 476 (489)
||-.|-|
T Consensus 462 PTSAEEl 468 (478)
T KOG0405|consen 462 PTSAEEL 468 (478)
T ss_pred CCCHHHh
Confidence 5554443
No 68
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-31 Score=257.00 Aligned_cols=268 Identities=26% Similarity=0.350 Sum_probs=201.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (489)
++.+||+|||||||||+||.++.+.+.+ .++|++....-.| +.... ....+|+++. ..+.+...+..
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~--~~li~~~~~~gg~---------~~~~~-~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLK--VVLILEGGEPGGQ---------LTKTT-DVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCC--cEEEEecCCcCCc---------cccce-eecCCCCCccCCchHHHHHHHH
Confidence 3578999999999999999999999762 2566665432211 11111 2334455443 33333334445
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+.....++++.. ..|..++... +.|.++++. +.+++||||||..++. +..++.. ..+++++.+ ++.
T Consensus 69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg--- 139 (305)
T COG0492 69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG--- 139 (305)
T ss_pred HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence 556667888887 6888888774 688888888 9999999999999874 4333311 246777643 222
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSD 281 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~ 281 (489)
+..+++++|||||.+++|.|..|.+.+.+|++++|++.+-+ .+.+.+.+++. +|+++. ++.++++..+
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~-~~~i~ei~G~-- 208 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLT-NTVVKEILGD-- 208 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEe-CCceeEEecC--
Confidence 35678999999999999999999999999999999986654 23445556655 899999 9999999833
Q ss_pred CcEEEEEeCCC----cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 282 GRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 282 ~~v~~v~~~~g----~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+ +..|++++. +.+.+|.+++++|..|++++++..+...++|.|.+|+.++||+|+|||+||++....
T Consensus 209 ~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 209 D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence 3 567777763 278999999999999999999998884456889999999999999999999998764
No 69
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.6e-31 Score=278.18 Aligned_cols=285 Identities=20% Similarity=0.305 Sum_probs=194.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+.+||+||||||||++||..|++.|+ +|+|||++.... . ..... ....+++.....+........+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG-~-~~~~~--------~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGG-Q-ITITS--------EVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCc-e-EEecc--------ccccCCCCcCCCHHHHHHHHHHH
Confidence 45899999999999999999999876 799999864321 1 00000 00011111100011111222344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHHhh
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~~~ 204 (489)
+++.+++++ .++|+.++.+.. .+.+.++ .+.|++||+|||+.|+. |.++|.. ..+++++..... ..
T Consensus 70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~ 140 (555)
T TIGR03143 70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EF 140 (555)
T ss_pred HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hh
Confidence 566789986 468999987653 5666555 58999999999999874 4455532 234544432211 23
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++++|||||++|+|+|..|.++|.+|+++++.+.+.. .... ..+.++..||++++ ++.|+++.. ++.+
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~-~~~V~~i~~--~~~v 211 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKF-NTELKEATG--DDGL 211 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEe-CCEEEEEEc--CCcE
Confidence 4689999999999999999999999999999999876532 2222 22334557999999 999999973 3444
Q ss_pred EEEEe---CCCcEE----EcCE----EEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccC
Q 011267 285 AAVKL---EDGSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 285 ~~v~~---~~g~~i----~aD~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~ 352 (489)
..+.+ .+|++. ++|. |++++|++|++.+++. +++.+ +|+|.||++++|++|+|||+|||+....
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--- 287 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL--- 287 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc---
Confidence 33332 456532 3676 9999999999988765 46665 5779999999999999999999975221
Q ss_pred CcccccccHHHHHHHHHHHHHHH
Q 011267 353 DRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
..+..|..+|+.||.+|
T Consensus 288 ------~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 288 ------RQVVTAVADGAIAATSA 304 (555)
T ss_pred ------chheeHHhhHHHHHHHH
Confidence 12344777787777776
No 70
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=2.4e-30 Score=257.15 Aligned_cols=288 Identities=24% Similarity=0.278 Sum_probs=196.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...++|+|||+|++|+++|..|++.|. +|+++|+.+..... +..+ .+....+... .....+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~~--~~~~~~~~~~-----------~~~~~~ 76 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLFG--IPEFRIPIER-----------VREGVK 76 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eeec--CcccccCHHH-----------HHHHHH
Confidence 356799999999999999999999876 79999987653211 0000 0000000000 011234
Q ss_pred HHHHCCcEEEeCCcEEEEeC----CC-----CEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD 198 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~----~~-----~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~ 198 (489)
.+.+.+++++.++.+..++. .. ..+..+ +..+.||+||||||+. +. .|.++|.+.++++... ....
T Consensus 77 ~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~~~~ 152 (352)
T PRK12770 77 ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--EYLF 152 (352)
T ss_pred HHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--HHHH
Confidence 45566999998877654432 01 111111 2247899999999994 54 4666676666665432 1222
Q ss_pred HHHHh-----------hcCCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 199 ALISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 199 ~~~~~-----------~~~~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
.+... ...+++++|||+|++|+|+|..|...|.+ |+++++.+.... + ......+.|+++||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~i 227 (352)
T PRK12770 153 RIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVEF 227 (352)
T ss_pred HhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCEE
Confidence 21110 01258999999999999999999999997 999987754211 1 1133445688999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEe--------------------CCCcEEEcCEEEEccCCCCCCchhhh-cCCeec-CCc
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGG 324 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~--------------------~~g~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~ 324 (489)
++ ++.+++++.. +++..+.+ .+++++++|.||+++|++|++.++.+ +|+..+ +++
T Consensus 228 ~~-~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~ 304 (352)
T PRK12770 228 LE-LVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGE 304 (352)
T ss_pred ee-ccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCc
Confidence 99 9999998732 34434432 12357999999999999999887776 788775 467
Q ss_pred EEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 325 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 325 i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+.||++++|+.|+|||+|||+..+. .+..|+.+|+.+|.+|..
T Consensus 305 i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 305 IVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred EeeCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987432 345688889998888753
No 71
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=4.5e-30 Score=243.67 Aligned_cols=294 Identities=21% Similarity=0.344 Sum_probs=214.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..++++|||+|+|.+|.+.+..|-...+ +|++|++.+++.|. |.|+..-...-+ . ..+ ..-..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve-~-rSI-----------vEPIr 114 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVE-L-RSI-----------VEPIR 114 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCcccccee-e-hhh-----------hhhHH
Confidence 3467899999999999999998877655 89999999997765 444321111100 0 000 01112
Q ss_pred hHHHHC--CcEEEeCCcEEEEeCCCCEEEeC----CC----eEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH
Q 011267 128 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 197 (489)
Q Consensus 128 ~~~~~~--~i~~~~~~~V~~id~~~~~v~~~----~g----~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~ 197 (489)
...++. ++.++. ++.+.||++++.|++. ++ -.+.||+||+|+|+.+..+ .++|- .++-+.++..+|+
T Consensus 115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF-gipGV-~e~~~FLKEv~dA 191 (491)
T KOG2495|consen 115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF-GIPGV-EENAHFLKEVEDA 191 (491)
T ss_pred HHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC-CCCch-hhchhhhhhhhHH
Confidence 222332 456665 6889999999987653 34 3689999999999998753 44443 3344577888899
Q ss_pred HHHHHhhc-----------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCcEEEEccCCcchhhh
Q 011267 198 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRL 246 (489)
Q Consensus 198 ~~~~~~~~-----------------~~~~vvViG~G~~g~e~A~~l~~~--------------g~~V~lv~~~~~~l~~~ 246 (489)
++++..+- .--+++|||||++|+|+|..|... -.+||+++..+.+|+ +
T Consensus 192 qeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-m 270 (491)
T KOG2495|consen 192 QEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-M 270 (491)
T ss_pred HHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-H
Confidence 88865431 012699999999999999998754 247999999999998 6
Q ss_pred hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCeec---
Q 011267 247 FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS--- 321 (489)
Q Consensus 247 ~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--- 321 (489)
|+..+.++.++.+.+.||++.+ ++.|+.+... .+ .+...+| ++|++-+++|++|..|. ++.+.+.-..+
T Consensus 271 Fdkrl~~yae~~f~~~~I~~~~-~t~Vk~V~~~---~I-~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~ 344 (491)
T KOG2495|consen 271 FDKRLVEYAENQFVRDGIDLDT-GTMVKKVTEK---TI-HAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQG 344 (491)
T ss_pred HHHHHHHHHHHHhhhccceeec-ccEEEeecCc---EE-EEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccC
Confidence 9999999999999999999999 9999998632 22 2334455 47999999999999987 55554433332
Q ss_pred CCcEEeCCCCCC-CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 322 VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 322 ~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
+.++.||++||. +.+||||+|||+..+.. .++.+.|.++|..+|+++
T Consensus 345 rr~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 345 RRGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred ceeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHH
Confidence 347999999998 89999999999943332 235677899999999987
No 72
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.96 E-value=5e-28 Score=256.23 Aligned_cols=288 Identities=12% Similarity=0.091 Sum_probs=180.0
Q ss_pred Ccccccceeeeee-cceecCCCCCceeee-cccccccccccccc-----------------c-------cccCCCCCCcE
Q 011267 1 MASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVV-----------------A-------YSSFANENREF 54 (489)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------~-------~~~~~~~~~~v 54 (489)
+++.+||||..|| |+|+ +|+++|+++. +++++....|+..+ + +.+...+.++|
T Consensus 308 ii~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKV 386 (1028)
T PRK06567 308 IIVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNI 386 (1028)
T ss_pred HHHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeE
Confidence 3578999999999 9999 7999999987 68888888886544 1 11223467899
Q ss_pred EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCC--C---------CCCccccCC-CCCCCCCCCCCCccccCC
Q 011267 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--PYE--R---------PALTKGYLF-PLDKKPARLPGFHTCVGS 120 (489)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~--~y~--~---------~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 120 (489)
+||||||||++||++|++.|+ +||++|+.+.. +|+ . +.+...... ........++
T Consensus 387 aVVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-------- 455 (1028)
T PRK06567 387 LVTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-------- 455 (1028)
T ss_pred EEECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc--------
Confidence 999999999999999999988 79999986532 111 0 111110000 0001111111
Q ss_pred CCCCCChhHH------HHC--CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCC-CCCCCCCCCCCCCCceEee
Q 011267 121 GGERQTPEWY------KEK--GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYI 191 (489)
Q Consensus 121 ~~~~~~~~~~------~~~--~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~-~~~~~p~~~g~~~~gv~~~ 191 (489)
.+...+.+ .+. ++.++.+..+ +..++.++-....||+++||||+ .|+ .+.++|.+.+++...
T Consensus 456 --~R~~k~~l~~i~~il~~g~~v~~~~gv~l------G~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA 526 (1028)
T PRK06567 456 --VRWDKNNLDILRLILERNNNFKYYDGVAL------DFNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTA 526 (1028)
T ss_pred --ccchHHHHHHHHHHHhcCCceEEECCeEE------CccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEH
Confidence 01111111 122 3555545331 12222222223579999999999 576 455677777777765
Q ss_pred cCHHHHHHHHHh--------hcCCCcEEEECCCHHHHHHHHHHHh-----------------------------------
Q 011267 192 RDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG----------------------------------- 228 (489)
Q Consensus 192 ~~~~~~~~~~~~--------~~~~~~vvViG~G~~g~e~A~~l~~----------------------------------- 228 (489)
.++....+.... +..+++|+|||||++|+|+|.....
T Consensus 527 ~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 527 SDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred HHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence 432222111111 1235799999999999999994432
Q ss_pred ----------------CCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--
Q 011267 229 ----------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-- 290 (489)
Q Consensus 229 ----------------~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-- 290 (489)
+|. |+++.|+..--.... ..-.+.+.+ ..+.||+|+. +....++..+++|++.++++.
T Consensus 607 ~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~-~~~~eEv~~-A~eEGV~f~~-~~~P~~i~~d~~g~v~~l~~~~~ 682 (1028)
T PRK06567 607 FKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAY-KLNHEELIY-ALALGVDFKE-NMQPLRINVDKYGHVESVEFENR 682 (1028)
T ss_pred hcchhccchhhhhhccCCc-eEEEecCChhhCCCC-CCCHHHHHH-HHHcCcEEEe-cCCcEEEEecCCCeEEEEEEEEE
Confidence 222 888887752211000 001233433 4567999999 999999986666777766553
Q ss_pred ------------C----------------CcEEEcCEEEEccCCCCCCchh
Q 011267 291 ------------D----------------GSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 291 ------------~----------------g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
+ ..+++||.||+|+|..||+.++
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~ 733 (1028)
T PRK06567 683 NRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD 733 (1028)
T ss_pred ecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence 1 1469999999999999998763
No 73
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=5.8e-27 Score=237.69 Aligned_cols=279 Identities=18% Similarity=0.254 Sum_probs=180.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
.+.++|+||||||||++||..|++... +.+|+|+|+.+.+ |-. +..+ ..+.......+ ...+..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~p-gGl--vr~g-vaP~~~~~k~v-----------~~~~~~ 87 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTP-FGL--VRSG-VAPDHPETKNV-----------TNQFSR 87 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCC-cce--Eeec-cCCCcchhHHH-----------HHHHHH
Confidence 356789999999999999999997332 4589999998753 321 1110 11111100000 112334
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHH-------HHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALI 201 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~-------~~~~~ 201 (489)
++.+.+++++.+..+ ++.+.+++-. ..||+||+|||+.+...+.++|.+.++++...++.. ...+.
T Consensus 88 ~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~ 160 (491)
T PLN02852 88 VATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLP 160 (491)
T ss_pred HHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhh
Confidence 566678888876433 2334443332 479999999999864445678888889887655421 11121
Q ss_pred HhhcCCCcEEEECCCHHHHHHHHHHHhC--------------------CC-cEEEEccCCcchhhhhCHHH---------
Q 011267 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL--------- 251 (489)
Q Consensus 202 ~~~~~~~~vvViG~G~~g~e~A~~l~~~--------------------g~-~V~lv~~~~~~l~~~~~~~~--------- 251 (489)
..+..+++++|||+|++|+|+|..|.+. +. +|+++.|+...-..+...++
T Consensus 161 ~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~ 240 (491)
T PLN02852 161 PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNV 240 (491)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCC
Confidence 1234579999999999999999998775 54 59999988632111111111
Q ss_pred ----------------------------HHHHHHHHHh---------cCcEEEEcCceEEEEEeC--CCCcEEEEEeC--
Q 011267 252 ----------------------------AQRYEQLYQQ---------NGVKFVKVGASIKNLEAG--SDGRVAAVKLE-- 290 (489)
Q Consensus 252 ----------------------------~~~l~~~l~~---------~Gv~~~~~~~~v~~i~~~--~~~~v~~v~~~-- 290 (489)
.+.+.+...+ ++|.|++ ....++|..+ +++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f-~~sP~ei~~~~~~~~~v~~l~~~~~ 319 (491)
T PLN02852 241 RVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVF-FRNPTRFLDSGDGNGHVAGVKLERT 319 (491)
T ss_pred ceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEc-cCCCeEEEccCCCCCcEEEEEEEEe
Confidence 1122222222 5799999 8999999742 23577777663
Q ss_pred ---------------CC--cEEEcCEEEEccCCC--CCCch-h-hhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccC
Q 011267 291 ---------------DG--STIDADTIVIGIGAK--PTVSP-F-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 291 ---------------~g--~~i~aD~vi~a~G~~--p~~~~-~-~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~ 348 (489)
+| ++++||.||.++|++ |...+ + ...++..+ +|.|.+|+.++|+.|+|||+|||...+
T Consensus 320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp 399 (491)
T PLN02852 320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP 399 (491)
T ss_pred ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC
Confidence 12 259999999999998 55443 3 33345444 577999988899999999999999876
Q ss_pred Ccc
Q 011267 349 LKM 351 (489)
Q Consensus 349 ~~~ 351 (489)
...
T Consensus 400 ~gv 402 (491)
T PLN02852 400 TGI 402 (491)
T ss_pred CCe
Confidence 543
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=7.6e-26 Score=250.73 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=191.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.+||+||||||||++||.++++.|. +|+|+|+++...-. +... .. .+++.. .........+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG~-------~~~~-~~---~~~g~~---~~~~~~~~~~~l 225 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGGS-------LLSE-AE---TIDGKP---AADWAAATVAEL 225 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCCe-------eecc-cc---ccCCcc---HHHHHHHHHHHH
Confidence 5799999999999999999999876 79999998664211 0000 00 000000 000001122233
Q ss_pred HHC-CcEEEeCCcEEEEeCCCCEEEe-----------C-----CCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecC
Q 011267 131 KEK-GIEMIYQDPVTSIDIEKQTLIT-----------N-----SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD 193 (489)
Q Consensus 131 ~~~-~i~~~~~~~V~~id~~~~~v~~-----------~-----~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~ 193 (489)
... +++++.+++|..++........ . .-.++.|++||||||+.++. +.++|.+.+++++...
T Consensus 226 ~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~-~pipG~~~pgV~~~~~ 304 (985)
T TIGR01372 226 TAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP-LVFANNDRPGVMLAGA 304 (985)
T ss_pred hcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC-CCCCCCCCCCcEEchH
Confidence 334 5999998888888654321111 0 01258999999999999874 5567888899887644
Q ss_pred HHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
.....+ ......+++++|||+|.+|+|+|..|.+.|. .|++++..+.+. ..+.+.+++.||++++ ++.
T Consensus 305 ~~~~l~-~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~~-~~~ 373 (985)
T TIGR01372 305 ARTYLN-RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVLT-GHV 373 (985)
T ss_pred HHHHHH-hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEEc-CCe
Confidence 332211 1112357999999999999999999999996 478887765432 2355678899999999 999
Q ss_pred EEEEEeCCCCcEEEEEeC----CCcEEEcCEEEEccCCCCCCchhhhcCCeec--C--CcEEeCCCCCCCCCCeEEeccc
Q 011267 273 IKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDV 344 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~----~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--~--g~i~vd~~~~t~~~~Iya~GD~ 344 (489)
++++.. ++.+..|++. ++++++||.|+++.|.+|+++++..++.+.. . +... -.|+.|+||++||+
T Consensus 374 v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~ 447 (985)
T TIGR01372 374 VAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAA 447 (985)
T ss_pred EEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeecc
Confidence 999973 3455556654 4568999999999999999999988876542 1 1111 13779999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 345 AAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
+... ....|..+|..||..++
T Consensus 448 ~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 448 NGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred CCcc-----------CHHHHHHHHHHHHHHHH
Confidence 8643 33457777877777664
No 75
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=7.2e-27 Score=240.87 Aligned_cols=334 Identities=18% Similarity=0.247 Sum_probs=210.7
Q ss_pred ccceeeeeecceecCCCCCceeee--ccccccccccccccc------cc---cCCCCCCcEEEEcCchHHHHHHHHHHHc
Q 011267 5 SNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA------YS---SFANENREFVIVGGGNAAGYAARTFVEH 73 (489)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~---~~~~~~~~vvIIGgG~AGl~aA~~L~~~ 73 (489)
+|+||++|||+|+.||+++|..+. +++.+..+++...+. .+ |...+.++|.|||+|||||+||.+|.+.
T Consensus 1728 tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~ 1807 (2142)
T KOG0399|consen 1728 TNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKA 1807 (2142)
T ss_pred hCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhc
Confidence 799999999999999999999988 777777777777662 22 2344678999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEE
Q 011267 74 GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL 153 (489)
Q Consensus 74 g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v 153 (489)
|+ .|++.|+..... +++.- .-....+..+ ...+..+.+.+.||+|+.++++- +.+
T Consensus 1808 gh---~v~vyer~dr~g--------gll~y-gipnmkldk~-------vv~rrv~ll~~egi~f~tn~eig------k~v 1862 (2142)
T KOG0399|consen 1808 GH---TVTVYERSDRVG--------GLLMY-GIPNMKLDKF-------VVQRRVDLLEQEGIRFVTNTEIG------KHV 1862 (2142)
T ss_pred Cc---EEEEEEecCCcC--------ceeee-cCCccchhHH-------HHHHHHHHHHhhCceEEeecccc------ccc
Confidence 98 699988776532 22210 0000000000 01334567788899999887652 333
Q ss_pred EeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHH--HHHHHh-------hcCCCcEEEECCCHHHHHHH
Q 011267 154 ITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA--DALISS-------LEKAKKVVVVGGGYIGMEVA 223 (489)
Q Consensus 154 ~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~--~~~~~~-------~~~~~~vvViG~G~~g~e~A 223 (489)
.+ |+-.-.+|.+|+|+|+. |+.+ +++|.++.|++..-.+.+. +.+... ...+|+|+|||||-+|.++.
T Consensus 1863 s~-d~l~~~~daiv~a~gst~prdl-pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dci 1940 (2142)
T KOG0399|consen 1863 SL-DELKKENDAIVLATGSTTPRDL-PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCI 1940 (2142)
T ss_pred cH-HHHhhccCeEEEEeCCCCCcCC-CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcccccc
Confidence 32 33334789999999986 4544 4678888888654322221 111111 13578999999999999999
Q ss_pred HHHHhCCCc-EEEEccCC---------cch---hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-
Q 011267 224 AAAVGWKLD-TTIIFPEN---------HLL---QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL- 289 (489)
Q Consensus 224 ~~l~~~g~~-V~lv~~~~---------~~l---~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~- 289 (489)
..-.++|.+ |.-++--+ .++ |+.|--++...-. -+..|-+.++|..--+++..++++.++++.+
T Consensus 1941 gtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~--~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~v 2018 (2142)
T KOG0399|consen 1941 GTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEA--KEHYGSDPRTYSVLTKRFIGDDNGNVTGLETV 2018 (2142)
T ss_pred ccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHH--HHHhCCCcceeeeeeeeeeccCCCceeeEEEE
Confidence 888888874 32222111 111 2222222222111 1222333333223334444444444433322
Q ss_pred -----------------C-CCcEEEcCEEEEccCCC-CCCchhhhcCCeecC-CcEEe-CCCCCCCCCCeEEeccccccC
Q 011267 290 -----------------E-DGSTIDADTIVIGIGAK-PTVSPFERVGLNSSV-GGIQV-DGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 290 -----------------~-~g~~i~aD~vi~a~G~~-p~~~~~~~~gl~~~~-g~i~v-d~~~~t~~~~Iya~GD~a~~~ 348 (489)
. +.+.++||+||+|.|+. |.....++++++.+. +.|.. +..+.|.++.|||+|||-+..
T Consensus 2019 rvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgq 2098 (2142)
T KOG0399|consen 2019 RVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQ 2098 (2142)
T ss_pred EEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCc
Confidence 1 23579999999999997 544567888998873 33543 456889999999999999865
Q ss_pred CccCCcccccccHHHHHHHHHHHHH
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIK 373 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~ 373 (489)
.-. ++.++.+++.|+.+-.
T Consensus 2099 slv------vwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2099 SLV------VWAIQEGRQAARQVDE 2117 (2142)
T ss_pred eEE------EEEehhhhHHHHHHHH
Confidence 432 4555555555555444
No 76
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9e-26 Score=207.57 Aligned_cols=208 Identities=27% Similarity=0.447 Sum_probs=162.4
Q ss_pred EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 160 ~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+.++.++||||.+|+ .|.+||. ..+.- .++.+......+.+.+|||+|++++|+|..|...|.+|++..|+
T Consensus 159 ~~ta~~fvIatG~RPr-Yp~IpG~----~Ey~I---TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 159 FLTAENFVIATGLRPR-YPDIPGA----KEYGI---TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred EeecceEEEEecCCCC-CCCCCCc----eeeee---cccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 5789999999999998 4665552 22321 34556665567788899999999999999999999999998876
Q ss_pred CcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCCCCCch--
Q 011267 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSP-- 312 (489)
Q Consensus 240 ~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~-- 312 (489)
-+| +.||.++++.+.+++++.||+|.. ...+++++..++++. .|... .++ +-.+|.|+||+|+.+.++-
T Consensus 231 -I~L-rGFDqdmae~v~~~m~~~Gikf~~-~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~ 306 (503)
T KOG4716|consen 231 -ILL-RGFDQDMAELVAEHMEERGIKFLR-KTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLN 306 (503)
T ss_pred -eec-ccccHHHHHHHHHHHHHhCCceee-cccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcC
Confidence 333 469999999999999999999998 878888887777763 23322 222 3468999999999998763
Q ss_pred hhhcCCeec--CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCc
Q 011267 313 FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPY 388 (489)
Q Consensus 313 ~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~ 388 (489)
|+..|++.+ .+.|++|+.-+|++|+|||+||+.... +|....|.+.|+.+|+.|.++... .|..+|.
T Consensus 307 L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T 377 (503)
T KOG4716|consen 307 LDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT 377 (503)
T ss_pred CCccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCce
Confidence 677888874 577999999999999999999998743 345556999999999999876533 4555553
No 77
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=233.04 Aligned_cols=334 Identities=23% Similarity=0.237 Sum_probs=227.6
Q ss_pred ccccceeeeeecceecC--CCCCceeee--ccccccccccccccc---------cccCCCCCCcEEEEcCchHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
..+|+||++|||+|+.+ |.++|.... .++++....++..+. ..+.+.+.++|.||||||||++||..
T Consensus 62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence 56899999999999998 999999974 778888877777764 22224456899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCC---CCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEE
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLF---PLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSI 146 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~i 146 (489)
|.+.|+ .||++|+.+... +++. +..+.+.+ ...+..+.+++.|++|++++++-
T Consensus 142 L~~~G~---~Vtv~e~~~~~G--------Gll~yGIP~~kl~k~-----------i~d~~i~~l~~~Gv~~~~~~~vG-- 197 (457)
T COG0493 142 LSRAGH---DVTVFERVALDG--------GLLLYGIPDFKLPKD-----------ILDRRLELLERSGVEFKLNVRVG-- 197 (457)
T ss_pred HHhCCC---eEEEeCCcCCCc--------eeEEecCchhhccch-----------HHHHHHHHHHHcCeEEEEcceEC--
Confidence 999988 699988766532 2221 11111111 12345677888999999986652
Q ss_pred eCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh---------cCCCcEEEECCCH
Q 011267 147 DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGY 217 (489)
Q Consensus 147 d~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~---------~~~~~vvViG~G~ 217 (489)
+.++++.= .-.||.++++||+.-...-.++|.+.++++..-++.......... ..+++++|||+|.
T Consensus 198 ----~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~ 272 (457)
T COG0493 198 ----RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGD 272 (457)
T ss_pred ----CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCC
Confidence 12222211 136799999999864334456777778876554333222211111 1238999999999
Q ss_pred HHHHHHHHHHhCCC-cEEEEccCCcchhh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----
Q 011267 218 IGMEVAAAAVGWKL-DTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE----- 290 (489)
Q Consensus 218 ~g~e~A~~l~~~g~-~V~lv~~~~~~l~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~----- 290 (489)
++++++....++|. .|+.+.+...--.. ..+........+...++|+++.+ .....++..+++|++..+.+.
T Consensus 273 Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~-~~~~~~~~~~e~GrV~~~~~~~~~~~ 351 (457)
T COG0493 273 TAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLP-FVQPKAFIGNEGGRVTGVKFGRVEPG 351 (457)
T ss_pred CHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccc-cCCceeEeecCCCcEeeeeccccccc
Confidence 99999999999998 57766422211000 01112234455667888999888 888888887777877765431
Q ss_pred ---C-----------C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCC-CCCCCCeEEeccccccCCc
Q 011267 291 ---D-----------G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLK 350 (489)
Q Consensus 291 ---~-----------g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~-~t~~~~Iya~GD~a~~~~~ 350 (489)
+ | .++++|.|+.++|..++... ....++..+ .|.+.+|+.+ +|+.|++||.||+..+..
T Consensus 352 ~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~- 430 (457)
T COG0493 352 EYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA- 430 (457)
T ss_pred CcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-
Confidence 1 2 35889999999999887433 223245554 5779999988 999999999999998533
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHh
Q 011267 351 MYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 351 ~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+..|+.+|+.+.
T Consensus 431 ---------~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 431 ---------LVVWAIAEGREAAKAID 447 (457)
T ss_pred ---------hhhhHHhhchHHHHhhh
Confidence 23346677777766553
No 78
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-25 Score=203.44 Aligned_cols=271 Identities=21% Similarity=0.316 Sum_probs=192.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..+||+||||||||.+||.+.++.|.+.+ .+-|+-.....+... ..++...+...|......++.-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfGGQvldT~~------------IENfIsv~~teGpkl~~ale~H 275 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFGGQVLDTMG------------IENFISVPETEGPKLAAALEAH 275 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhCCeeccccc------------hhheeccccccchHHHHHHHHH
Confidence 46899999999999999999999987311 111211111111110 1111111111122112233455
Q ss_pred HHHCCcEEEeCCcEEEEeCC-----CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHH
Q 011267 130 YKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI 201 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~-----~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~ 201 (489)
.+++.+++....+++++.+. ..+|++++|-.+..+.+|+|||++.+.+ ++||.+ -+|+.|+.. ..
T Consensus 276 v~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvPGE~e~rnKGVayCPH------CD 348 (520)
T COG3634 276 VKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVPGEDEYRNKGVAYCPH------CD 348 (520)
T ss_pred HhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCCchHHHhhCCeeeCCC------CC
Confidence 67788888777777777763 3589999999999999999999987653 445532 356666642 22
Q ss_pred HhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCC
Q 011267 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 202 ~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~ 280 (489)
..+.++|+|.|||||.+|+|.|-.|+..-..||+++-.+.+-. -+-+++.++. .+++++. |..-+++.. +
T Consensus 349 GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~-na~Ttei~G-d 419 (520)
T COG3634 349 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIIT-NAQTTEVKG-D 419 (520)
T ss_pred CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEe-cceeeEEec-C
Confidence 3467899999999999999999999998889999986654322 2344555554 4799999 999999983 3
Q ss_pred CCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCcc
Q 011267 281 DGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 351 (489)
Q Consensus 281 ~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~ 351 (489)
+.+|.++...+ | ..+.-+-|++-+|..||++||+.. ++.+ +|-|+||.+..|++|+|||+|||+..+.+.
T Consensus 420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccce
Confidence 45666666543 3 246778899999999999999998 6665 567999999999999999999999877653
No 79
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=183.29 Aligned_cols=273 Identities=21% Similarity=0.303 Sum_probs=189.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCc-cccCCCCCCCCCCCCCCccc-cCCCCCCCChh
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFHTC-VGSGGERQTPE 128 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (489)
+.+|+|||+|||+.+||.++++.-. +-+|+|.- ...... .+.+. ......++|+|+.. .+.+...+..+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~-----~~~~i~pGGQLt-TTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGM-----MANGIAPGGQLT-TTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhccc---CceEEeee-----eccCcCCCceee-eeeccccCCCCCcccccHHHHHHHHH
Confidence 4589999999999999999998754 35666532 111111 12222 23345677888753 45555566667
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHh--h
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--L 204 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~--~ 204 (489)
...++|.+++. .+|.++|...+ .+.+ +.+.+.+|.+|+|||+..+++. .||. .++.++-+-...+.-.... +
T Consensus 79 qs~r~Gt~i~t-EtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapi 154 (322)
T KOG0404|consen 79 QSERFGTEIIT-ETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPI 154 (322)
T ss_pred HHHhhcceeee-eehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchh
Confidence 77788999998 48999987664 4554 5556899999999999887543 3443 1221222222222222111 2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH-HHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~-~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
...+..+|||||-+++|-|..|.+++.+|++++|++.+-.+ ..++ +..+.-+|+++. |+.+.+...+ .+.
T Consensus 155 frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-------~~Mq~ra~~npnI~v~~-nt~~~ea~gd-~~~ 225 (322)
T KOG0404|consen 155 FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-------KIMQQRAEKNPNIEVLY-NTVAVEALGD-GKL 225 (322)
T ss_pred hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-------HHHHHHHhcCCCeEEEe-chhhhhhccC-ccc
Confidence 46788999999999999999999999999999999876442 2333 445556899999 8888777633 222
Q ss_pred E-----EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeC-CCCCCCCCCeEEeccccc
Q 011267 284 V-----AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 284 v-----~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~ 346 (489)
+ ..+.+.+.+.++.+-++.++|-.|++.+++. .++.+ +|.|++- ..-.||+|++||+||+..
T Consensus 226 l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 226 LNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred ccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccch
Confidence 2 2333334457999999999999999999987 67766 5777776 467799999999999985
No 80
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.91 E-value=8.5e-23 Score=208.10 Aligned_cols=289 Identities=17% Similarity=0.176 Sum_probs=179.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCC-----------------CccccCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPA-----------------LTKGYLFPLDK 106 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~----y~~~~-----------------l~~~~~~~~~~ 106 (489)
..+.++|+|||||+|||+||++|++.|. +++++|+++..+ |.... ....+.....+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 3456899999999999999999999987 799999987553 21000 00000000000
Q ss_pred CCCCCCCCccc--------------cCCCCCCCChhHHHHCCcE--EEeCCcEEEEeCCCC--EEEeCCC--e--EEeeC
Q 011267 107 KPARLPGFHTC--------------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYG 164 (489)
Q Consensus 107 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~--~v~~~~g--~--~i~yd 164 (489)
....++.++.. ...+....+.++.++.++. ++++++|+.+++... .|++.++ . +..||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 00011111110 0011112223445567877 888999999987654 4555432 2 45799
Q ss_pred cEEecCC--CCCCCCCCCCCC-CCCce-EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 165 SLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 165 ~lvlATG--~~~~~~p~~~g~-~~~gv-~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+||+||| +.|. .|.++|. ..+|. ....++.+.+ ...+++|+|||+|.+|+|+|..|...+.+|+++.+..
T Consensus 164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 9999999 4565 4655553 23442 1111122211 1368999999999999999999999999999999875
Q ss_pred cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCee
Q 011267 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 241 ~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
.+.. + ..+......+.. +..|..+. +++ .|++.||+++++|.||+|||++++.++|+..+
T Consensus 238 ~~~~----------~-~~~~~~~~~v~~-~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~--- 297 (461)
T PLN02172 238 ESDT----------Y-EKLPVPQNNLWM-HSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG--- 297 (461)
T ss_pred cccc----------c-ccCcCCCCceEE-CCccccee--cCC---eEEECCCCCccCCEEEECCcCCccccccCccc---
Confidence 3211 0 111122344566 77777665 233 47899999999999999999999999987543
Q ss_pred cCCcEEeCCCC------C---CC-CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 321 SVGGIQVDGQF------R---TR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 321 ~~g~i~vd~~~------~---t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
.+.+|++. + .. .|+++.+|=.... ..+.....||+.+|+.+.+..
T Consensus 298 ---~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 298 ---YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred ---ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 34444321 1 12 3888888843211 123446778888888777543
No 81
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.87 E-value=6.5e-22 Score=176.32 Aligned_cols=268 Identities=25% Similarity=0.366 Sum_probs=179.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
+.+|||||+||.+||.+|+..-. ..+|.||...+.. .|.. ..+ |+...+-...+- .+
T Consensus 1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~--i~~-ylekfdv~eq~~---------------~e 61 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQK--IGQ-YLEKFDVKEQNC---------------HE 61 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHH--HHH-HHHhcCccccch---------------hh
Confidence 47999999999999999999864 7899999987642 1111 111 221111000000 00
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (489)
...+.. ++ ++ .|..++...+.+.+.+|.++.|++|+++||+.|...- .+ .-+.+...|+.+.++.++..+.+.|
T Consensus 62 lg~~f~-~~-~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK 135 (334)
T KOG2755|consen 62 LGPDFR-RF-LN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAK 135 (334)
T ss_pred hcccHH-HH-HH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcc
Confidence 000000 11 22 3666778889999999999999999999999986322 22 2456777888888888888899999
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC------------c------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG------------V------------ 264 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G------------v------------ 264 (489)
.|+|+|.|-+++|++..+.. .+|++....+.+...+|+|.+.+.+.-.+...+ +
T Consensus 136 ~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg 213 (334)
T KOG2755|consen 136 IVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG 213 (334)
T ss_pred eEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence 99999999999999998875 579998888888888888888887776662211 0
Q ss_pred -----EEEE-----------------c-CceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 265 -----KFVK-----------------V-GASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 265 -----~~~~-----------------~-~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
+++. + ++-+....+.+...+.......| ..+.||.+++|+|+.||.+++-...++
T Consensus 214 ~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq 293 (334)
T KOG2755|consen 214 PALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQ 293 (334)
T ss_pred cccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhh
Confidence 0000 0 00000000000011111111111 368899999999999999876554455
Q ss_pred e-cCCcEEeCCCCCCCCCCeEEecccccc
Q 011267 320 S-SVGGIQVDGQFRTRMPGIFAIGDVAAF 347 (489)
Q Consensus 320 ~-~~g~i~vd~~~~t~~~~Iya~GD~a~~ 347 (489)
. +++|+.||+.|+|+.|++||+||++..
T Consensus 294 ~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 294 ITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred hccccCeeehhhccccccceeeecceecc
Confidence 4 468999999999999999999999973
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.82 E-value=5.7e-22 Score=181.41 Aligned_cols=188 Identities=30% Similarity=0.479 Sum_probs=130.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
||||||||+||++||.+|++.+. +++||++.+..+|....++...+............. . .....+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~ 70 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPA-R------LFKLVDQLKN 70 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHH-H------HGHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEecccccccccccccccccccccccccccccc-c------cccccccccc
Confidence 79999999999999999998765 799999887655544433322111100000000000 0 0011223367
Q ss_pred CCcEEEeCCcEEEEeCCCCEE----------EeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHH
Q 011267 133 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v----------~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~ 202 (489)
.+++++.++++.+++...+.+ ...++.++.||+||+|||+.|.. |.++|. +.....++..+++.+..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHT
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccc
Confidence 899998889999999887742 23456789999999999998763 444453 22233466778888888
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
.....++++|||
T Consensus 148 ~~~~~~~v~VvG-------------------------------------------------------------------- 159 (201)
T PF07992_consen 148 LLESPKRVAVVG-------------------------------------------------------------------- 159 (201)
T ss_dssp HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 777777999999
Q ss_pred cEEEEEeCCCcEEEcCEEEEccCCCCCCchh-hhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccC
Q 011267 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 283 ~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~-~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~ 348 (489)
+++| +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus 160 ---------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ---------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp ---------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ---------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4556 78888885 677999999999999999999999764
No 83
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.81 E-value=3.2e-19 Score=163.49 Aligned_cols=296 Identities=20% Similarity=0.292 Sum_probs=190.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCc--cccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--KGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
.++++|+|||||.+|++.|..+.+.-. .++|-|||+...+-|+ |.+. .+.+...+.... .
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~srr----------------~ 98 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSRR----------------K 98 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceEEeccchhhhhhccC----------------c
Confidence 467899999999999999999977643 7899999999988666 5442 111111111000 0
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCC----CCCCceEeecCHHHHHHHHH
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g----~~~~gv~~~~~~~~~~~~~~ 202 (489)
...+-..+.+.+. ..|.++++++++|.+.+|++|.||+||||+|..-. +..++| .+-|++.+..+....++..+
T Consensus 99 ~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~ 176 (446)
T KOG3851|consen 99 QASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYK 176 (446)
T ss_pred ccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHH
Confidence 0001111222222 47888999999999999999999999999998754 344433 34566665555555555544
Q ss_pred hh---cCCCcEEEE--------CCCHHHHHHHH-HHHhCCCc--EEEEccCCcchhhhh-CHHHHHHHHHHHHhcCcEEE
Q 011267 203 SL---EKAKKVVVV--------GGGYIGMEVAA-AAVGWKLD--TTIIFPENHLLQRLF-TPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 203 ~~---~~~~~vvVi--------G~G~~g~e~A~-~l~~~g~~--V~lv~~~~~~l~~~~-~~~~~~~l~~~l~~~Gv~~~ 267 (489)
.+ +.+.-+--. |+-.=.+-++. .+++.|.+ +.++.... |+..| -...++.+++..+++.|++.
T Consensus 177 ~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn 254 (446)
T KOG3851|consen 177 ELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVN 254 (446)
T ss_pred HHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEee
Confidence 43 333333333 33333333333 45666653 44444332 22233 35788899999999999998
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCC-CCCC-CCCCeEEec
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIG 342 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~Iya~G 342 (489)
. .....++...+...+.. -+++ | ++++++++-+..-..+. +.++.+.+....|++.||. .+|. .+||||++|
T Consensus 255 ~-krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiG 331 (446)
T KOG3851|consen 255 Y-KRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIG 331 (446)
T ss_pred e-ccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeec
Confidence 8 88888887432211111 1122 4 46889999998888776 7788887777678999997 6776 899999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
||+..|+.. +......|...+-+|++.
T Consensus 332 Dc~n~PnsK--------TaAAvaaq~~vv~~nl~~ 358 (446)
T KOG3851|consen 332 DCMNLPNSK--------TAAAVAAQSPVVDKNLTQ 358 (446)
T ss_pred cccCCCchh--------hHHHHHhcCchhhhhHHH
Confidence 999988753 222233445566667653
No 84
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.80 E-value=4.2e-19 Score=183.42 Aligned_cols=299 Identities=21% Similarity=0.288 Sum_probs=149.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CCC--------------CCccccC-CCCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----ERP--------------ALTKGYL-FPLDKKPARL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y----~~~--------------~l~~~~~-~~~~~~~~~~ 111 (489)
.++|+|||||++||++|++|++.|+ +++++|+++..+. ... ..++... ++..+.+.+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 3689999999999999999999987 7999999987641 110 0111111 1111222222
Q ss_pred CCCccccCCCCCCCChhHHHHCCc--EEEeCCcEEEEeCCC-------CEEEeCC-Ce--EEeeCcEEecCCCCCC-CCC
Q 011267 112 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTAS-RFP 178 (489)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~-------~~v~~~~-g~--~i~yd~lvlATG~~~~-~~p 178 (489)
|.+++. ......+..+.+++++ .++++++|+++++.. -+|++.+ |+ +-.||+||+|||.... ..|
T Consensus 78 p~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 78 PDFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp SSSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 322211 0111222344455666 478889999987532 2565543 43 3469999999997531 123
Q ss_pred C--CCCCC-CCce-EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-chhhhh------
Q 011267 179 E--KIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF------ 247 (489)
Q Consensus 179 ~--~~g~~-~~gv-~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~l~~~~------ 247 (489)
. .+|.+ .+|- .+.+++.+. ...++|+|+|||+|.+|+++|..+.....+|++..|+.. ++++..
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 2 23321 2221 222222221 124789999999999999999999999889988877642 222211
Q ss_pred ----------------CHHHHHHHH-HHHH------hcC--------------------------cEEEEcCceEEEEEe
Q 011267 248 ----------------TPSLAQRYE-QLYQ------QNG--------------------------VKFVKVGASIKNLEA 278 (489)
Q Consensus 248 ----------------~~~~~~~l~-~~l~------~~G--------------------------v~~~~~~~~v~~i~~ 278 (489)
+..+.+.+. +.+. ..| |.+. ..|+++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk---~~I~~~~~ 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK---PDIKRFTE 307 (531)
T ss_dssp --------------------------------------------------------------------E---E-EEEE-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccc
Confidence 111111111 0110 011 1111 22333331
Q ss_pred CCCCcEEEEEeCCCcEE-EcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCC---CCCCCCeEEeccccccCCccCCc
Q 011267 279 GSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~~i-~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~---~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
. .|.++||+++ ++|.||+|||++...++|++.-+...++.+..-.++ +...|++..+|=+... |
T Consensus 308 ---~---~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g- 375 (531)
T PF00743_consen 308 ---N---SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G- 375 (531)
T ss_dssp ---S---EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S-
T ss_pred ---c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c-
Confidence 1 5778999875 699999999999998888876554433222111111 1134778888844311 1
Q ss_pred ccccccHHHHHHHHHHHHHHHhcC
Q 011267 355 TARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
..+..+..||+.+|+.+.+.
T Consensus 376 ----~~fp~~ElQArw~a~v~sG~ 395 (531)
T PF00743_consen 376 ----SIFPIFELQARWAARVFSGR 395 (531)
T ss_dssp -----HHHHHHHHHHHHHHHHTTS
T ss_pred ----cccccccccccccccccccc
Confidence 12344778888888877653
No 85
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.69 E-value=8.9e-17 Score=147.26 Aligned_cols=177 Identities=23% Similarity=0.310 Sum_probs=99.3
Q ss_pred EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--C----CCCC-ccccCCCCCCCCCCCCCC--cc---------
Q 011267 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E----RPAL-TKGYLFPLDKKPARLPGF--HT--------- 116 (489)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~----~~~l-~~~~~~~~~~~~~~~~~~--~~--------- 116 (489)
+|||||+|||++|.+|++.|.+ +++|+|+++...- . .+.+ +..........+ .+..+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCC-cccccccccCCCCCCCcc
Confidence 7999999999999999999872 4999999865431 1 0111 000000000000 00000 00
Q ss_pred -ccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCC--CCCCCCCCCC-CCCCceEe
Q 011267 117 -CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY 190 (489)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~--~~~~~p~~~g-~~~~gv~~ 190 (489)
....+....+..+.++++++++.+++|+++.++. ..|++.++.++.+++||+|||. .|. .|..++ ... ....
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h 155 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH 155 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence 0000111122345567789999999999998754 4888989988999999999996 454 454555 222 2222
Q ss_pred ecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
..++.+. ....+++|+|||+|.+|+++|..|.+.|.+|+++.|++.
T Consensus 156 ~~~~~~~-----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 156 SADWRDP-----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGG-STT-----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhhcCCh-----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 2111111 123579999999999999999999999999999999874
No 86
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.69 E-value=3e-15 Score=144.94 Aligned_cols=295 Identities=22% Similarity=0.319 Sum_probs=170.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC-CCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-KPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 127 (489)
+...+++|||||+||++||+.|++.|+ ++.|+|+++........+.+- ++... ...-+ .-...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~---~v~LVEKepsiGGrmak~~k~--FP~~dcs~C~L-----------aP~m~ 185 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGF---KVYLVEKEPSIGGRMAKLNKT--FPTNDCSICIL-----------APKMV 185 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCC---eEEEEecCCcccccHHhhhcc--CCCcccchhhc-----------cchhh
Confidence 446789999999999999999999998 699999999876554444431 12110 00000 00112
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC--CC------------------------------------------------------
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIE--KQ------------------------------------------------------ 151 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~--~~------------------------------------------------------ 151 (489)
+...+.++++++.++|..++-. ++
T Consensus 186 ~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~ 265 (622)
T COG1148 186 EVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLN 265 (622)
T ss_pred hhccCCceeeeeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccc
Confidence 2233344444444444442210 00
Q ss_pred ---------------------EEEeCCC-e--EEeeCcEEecCCCCCCCCCCCCCC---CCCceEeecCHHHHHHHHHhh
Q 011267 152 ---------------------TLITNSG-K--LLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSL 204 (489)
Q Consensus 152 ---------------------~v~~~~g-~--~i~yd~lvlATG~~~~~~p~~~g~---~~~gv~~~~~~~~~~~~~~~~ 204 (489)
.+.++.. + ++....+|+|||-.+......... ..+++. |-.+.+++.+.-
T Consensus 266 ~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVI---T~lElErml~~~ 342 (622)
T COG1148 266 YNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVI---TNLELERMLNPN 342 (622)
T ss_pred cccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchh---hHHHHHHHhccC
Confidence 1111111 1 467789999999876532221111 122222 222344544311
Q ss_pred -------------cCCCcEEEE---CCCH--------------HHHHHHHHHHhCC--CcEEEEccCCcchhhhhCHHHH
Q 011267 205 -------------EKAKKVVVV---GGGY--------------IGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA 252 (489)
Q Consensus 205 -------------~~~~~vvVi---G~G~--------------~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~~~~~~ 252 (489)
..+++|++| |+-- .++.-|...+++. .+|+++...-| .++..+-
T Consensus 343 GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR----afG~~yE 418 (622)
T COG1148 343 GPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR----AFGKDYE 418 (622)
T ss_pred CCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----ccCccHH
Confidence 245677766 4421 2334444444443 36777665543 3555666
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCc---hhhhcCCeec-CC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VG 323 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~---~~~~~gl~~~-~g 323 (489)
+++.+.-++.||+|+. .++.+|...+++++ .|+.+| | .++++|+||+++|+.|... +.+.+|+..+ +|
T Consensus 419 efY~~~Q~~~gV~fIR--Grvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~g 495 (622)
T COG1148 419 EFYVRSQEDYGVRFIR--GRVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDG 495 (622)
T ss_pred HHHHhhhhhhchhhhc--CChHHheeCCCCee-EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCC
Confidence 6777766689999997 57778776666662 344443 3 4689999999999998642 4566788876 56
Q ss_pred cEEeC-CCCC---CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 324 GIQVD-GQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 324 ~i~vd-~~~~---t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
++... +.++ |+.++||.+|-+....+- ..+..+|..+|..|+..|.
T Consensus 496 F~k~~hPkl~pv~s~~~GIflAG~aqgPkdI-------~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 496 FLKEAHPKLRPVDSNRDGIFLAGAAQGPKDI-------ADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ccccCCCCcccccccCCcEEEeecccCCccH-------HHHHHHhHHHHHHHHHHhh
Confidence 66554 5555 588999999966653331 2345555555544444443
No 87
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.68 E-value=5.4e-16 Score=152.12 Aligned_cols=249 Identities=20% Similarity=0.312 Sum_probs=130.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccc------cCCCC-----CCCCCCCCCCccccC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPL-----DKKPARLPGFHTCVG 119 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~------~~~~~-----~~~~~~~~~~~~~~~ 119 (489)
.+|+++||.||++|+.|..|.+.+ ..++..+|+.+...|+.-++..+ ++.+. ...+..+..+-...+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999986 45899999998876664333221 11110 000111100000000
Q ss_pred C-----------CCCCC---ChhHHH-HCCcEEEeCCcEEEEeCCC------CEEEeC----CCeEEeeCcEEecCCCCC
Q 011267 120 S-----------GGERQ---TPEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 ~-----------~~~~~---~~~~~~-~~~i~~~~~~~V~~id~~~------~~v~~~----~g~~i~yd~lvlATG~~~ 174 (489)
. ..... ...|.. +.+-.+..+.+|++|++.. .+|.+. ++..+.+++||+|||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 00000 012222 2343477788999998754 366662 456899999999999888
Q ss_pred CCCCCCCCC-C-CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchh------
Q 011267 175 SRFPEKIGG-Y-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------ 244 (489)
Q Consensus 175 ~~~p~~~g~-~-~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~------ 244 (489)
. +|..-.. . .+.+....++.. ........++|+|||||.+|.|++..|.+.+. +|+++.|+..+.+
T Consensus 160 ~-iP~~~~~~~~~~~v~Hss~~~~---~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 160 R-IPEWFQDLPGSPRVFHSSEYLS---RIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp ----GGGGGGTT-TTEEEGGGHHH---HHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred C-CCcchhhcCCCCCEEEehHhhh---ccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 6 4533221 1 144554433322 11124578999999999999999999998875 7999998854322
Q ss_pred --hhhCHHH-------------------------------HHHHHHH-----H-HhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 245 --RLFTPSL-------------------------------AQRYEQL-----Y-QQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 245 --~~~~~~~-------------------------------~~~l~~~-----l-~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
..|+|+. .+.+.+. + .+..+.++. +++|+.++..+++.+
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~-~~~v~~~~~~~~~~~- 313 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLP-NTEVTSAEQDGDGGV- 313 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEET-TEEEEEEEEES-SSE-
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeC-CCEEEEEEECCCCEE-
Confidence 1233332 2222111 1 223478888 999999988765444
Q ss_pred EEEeCC---C--cEEEcCEEEEccCCC
Q 011267 286 AVKLED---G--STIDADTIVIGIGAK 307 (489)
Q Consensus 286 ~v~~~~---g--~~i~aD~vi~a~G~~ 307 (489)
.+.+.+ + .++++|.||+|||++
T Consensus 314 ~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 314 RLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 355543 2 468999999999974
No 88
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=1.8e-14 Score=137.69 Aligned_cols=292 Identities=18% Similarity=0.246 Sum_probs=176.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccc------C----CCCC-CCCC-------
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY------L----FPLD-KKPA------- 109 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~------~----~~~~-~~~~------- 109 (489)
++..+|++.||-||+-|+.|..|.+.+. .++..+|+.+.+-|+.-++-.+- + ..-+ ..+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 4567899999999999999999998863 47999999998777643332211 0 0000 0000
Q ss_pred ---CCCCCcccc----CCCCCCCChhHHHHCCcEEEeCCcEE---EEeCCCC---EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 110 ---RLPGFHTCV----GSGGERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 110 ---~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~V~---~id~~~~---~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++-.|-... .+..+...-.|....--.++.+++|+ .+|.+.. .+.+.++.++.+..||+++|.+|..
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 011110000 00001111234444446678888898 4444433 3566778899999999999999974
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCcchhh-------
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR------- 245 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~l~~------- 245 (489)
++......-+.++... + ....+..+...++|.|||+|.+|.|+-..|... ..++.++.|+..+++.
T Consensus 160 P~~f~~l~~~~vfHss--~-~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 160 PPCFRSLIGERVFHSS--E-YLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred ChHHhCcCccceeehH--H-HHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 4432222122344321 1 111122233445599999999999999988643 3357888888654331
Q ss_pred -hhCHHHHHH-------------------------------HHHHHH------hcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 246 -LFTPSLAQR-------------------------------YEQLYQ------QNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 246 -~~~~~~~~~-------------------------------l~~~l~------~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
.|.|+..++ +..+.+ +..+.++. +++|+.++..++|++ .+
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~-~~ev~~~~~~G~g~~-~l 314 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLS-LSEVQSVEPAGDGRY-RL 314 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeecc-ccceeeeecCCCceE-EE
Confidence 122222221 111111 24578888 999999998777753 44
Q ss_pred EeC-----CCcEEEcCEEEEccCCCCCCc-hhhhcC--Cee-cCCcEEeCCCCCCC-----CCCeEEeccccc
Q 011267 288 KLE-----DGSTIDADTIVIGIGAKPTVS-PFERVG--LNS-SVGGIQVDGQFRTR-----MPGIFAIGDVAA 346 (489)
Q Consensus 288 ~~~-----~g~~i~aD~vi~a~G~~p~~~-~~~~~g--l~~-~~g~i~vd~~~~t~-----~~~Iya~GD~a~ 346 (489)
.+. ..++++.|.||+|||++...+ |++.+. +.. ++|...|+.+++.. .-.||+.|=+..
T Consensus 315 ~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 315 TLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred EEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 442 225789999999999985554 666654 233 45778999876652 236999986654
No 89
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.66 E-value=4e-15 Score=148.95 Aligned_cols=290 Identities=15% Similarity=0.193 Sum_probs=158.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
.+..++|+||||||||++||.+|. +.|+ +|+|+|+.+.+.. +.. +-.+++... +..+ ...+
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pgG----LvR-~GVaPdh~~--~k~v--------~~~f 97 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPYG----LIR-YGVAPDHIH--VKNT--------YKTF 97 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCcc----EEE-EeCCCCCcc--HHHH--------HHHH
Confidence 345678999999999999999876 4555 7999999876421 110 111111100 0000 0111
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCC--------CC-CCC----CCceEeecC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRD 193 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~--------~~-g~~----~~gv~~~~~ 193 (489)
...+...++++..+.++- ..++.++=. -.||.+|+|||+.+..+|. +. |.+ ++|++..++
T Consensus 98 ~~~~~~~~v~f~gnv~VG------~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~d 170 (506)
T PTZ00188 98 DPVFLSPNYRFFGNVHVG------VDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARD 170 (506)
T ss_pred HHHHhhCCeEEEeeeEec------CccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehhe
Confidence 122344567766443221 122222112 3799999999998654331 00 332 457654433
Q ss_pred H-----HHHH-----HHHHh---hcCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEccC
Q 011267 194 V-----ADAD-----ALISS---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPE 239 (489)
Q Consensus 194 ~-----~~~~-----~~~~~---~~~~~~vvViG~G~~g~e~A~~l~--------------------~~g~-~V~lv~~~ 239 (489)
+ .+.+ ..... +...++++|||.|++++++|..|. +... +|+++-|+
T Consensus 171 fV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRR 250 (506)
T PTZ00188 171 LIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRR 250 (506)
T ss_pred EEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEec
Confidence 2 1111 11111 124578999999999999999753 2233 57787776
Q ss_pred Ccchh----------------------hhh------CH-----H--------HHHHHHHHHH----------hcCcEEEE
Q 011267 240 NHLLQ----------------------RLF------TP-----S--------LAQRYEQLYQ----------QNGVKFVK 268 (489)
Q Consensus 240 ~~~l~----------------------~~~------~~-----~--------~~~~l~~~l~----------~~Gv~~~~ 268 (489)
...-. .-+ +. . ..+.+.+..+ .+-+.|++
T Consensus 251 Gp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F 330 (506)
T PTZ00188 251 GFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIF 330 (506)
T ss_pred CHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEc
Confidence 21100 000 00 0 1112222221 13366777
Q ss_pred cCceEEEEEeCCCCcEEEEEeC-----------CC--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCC--
Q 011267 269 VGASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-- 333 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~-----------~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-- 333 (489)
..+.++|.. +++++.++++. .| ++++||+|+-++|++.. + +..+ ..++ .+. +...++
T Consensus 331 -~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~-p-~~g~--pFd~-~~~-n~~grv~~ 402 (506)
T PTZ00188 331 -YFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS-N-FAEN--LYNQ-SVQ-MFKEDIGQ 402 (506)
T ss_pred -cCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC-C-CCCC--Cccc-cCC-CCCCcccC
Confidence 788888874 34677777776 23 36999999999999864 2 2222 2221 121 112222
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
..|++|++|-+-++|....|. ....|...+..+...+
T Consensus 403 ~~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 403 HKFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 369999999999988766543 2233555555444443
No 90
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.65 E-value=4.6e-15 Score=148.87 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=113.6
Q ss_pred EEECCCHHHHHHH-HHHH----hCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 211 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 211 vViG~G~~g~e~A-~~l~----~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.|++.+.+|+|.+ ..+. +.|.+|+++...+..++. .++.+.+.+.+++.|+++++ ++.|.+++.. ++.+.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~-g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMP-GDEVLGAEFE-GGRVT 293 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEe-CCEEEEEEEe-CCEEE
Confidence 6788999999999 5554 579999999998888774 37888999999999999999 9999999854 45555
Q ss_pred EEEeCCCc--EEEcCEEEEccCCCCCCch-----------------------------------hhhcCCeecCCcEEeC
Q 011267 286 AVKLEDGS--TIDADTIVIGIGAKPTVSP-----------------------------------FERVGLNSSVGGIQVD 328 (489)
Q Consensus 286 ~v~~~~g~--~i~aD~vi~a~G~~p~~~~-----------------------------------~~~~gl~~~~g~i~vd 328 (489)
.+...+|+ .+.+|.||+|+|..+...+ +.+.|+.+|+....+|
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 55555553 5899999999998765432 1334555554445555
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
...++..+|+||+|++...+++....... -.|...|-.|++++.
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~~g~----Gva~~ta~~a~~~~~ 417 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREGCGS----GVALATALHAAEQIA 417 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhCCCc----hhHHHHHHHHHHHHH
Confidence 66666789999999999988764322111 124555566666655
No 91
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.64 E-value=3.4e-15 Score=151.83 Aligned_cols=184 Identities=18% Similarity=0.217 Sum_probs=113.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCC-CCCccccCCCCCCCCCCCCCCccc-----
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YER-PALTKGYLFPLDKKPARLPGFHTC----- 117 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~----y~~-~~l~~~~~~~~~~~~~~~~~~~~~----- 117 (489)
.++.+||+|||||++||++|++|++.|.+ +++++|++.... +++ +.+ ..........++.++..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l----~~~~p~~~~~~~~~p~~~~~~~ 78 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGL----RLDSPKWLLGFPFLPFRWDEAF 78 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCce----EECCchheeccCCCccCCcccC
Confidence 46789999999999999999999999974 299999997543 111 111 11111111111111110
Q ss_pred -cCCCCCCCChhHHHHCCcE--EEeCCcEEEEeCCC----CEEEeCCCeE--EeeCcEEecCCCC--CCCCCCCCCCCCC
Q 011267 118 -VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCT--ASRFPEKIGGYLP 186 (489)
Q Consensus 118 -~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~----~~v~~~~g~~--i~yd~lvlATG~~--~~~~p~~~g~~~~ 186 (489)
..........++++++++. +..+..|..++.+. .+|+++++.. +.+|+||+|||.. |. .|.++|.+..
T Consensus 79 ~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~f 157 (443)
T COG2072 79 APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDEF 157 (443)
T ss_pred CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccCC
Confidence 0011122334566666554 33444455555433 3778887765 4599999999963 33 4444443322
Q ss_pred ceEeecCHHHHHHHHHh-hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 187 GVHYIRDVADADALISS-LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~-~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
....++ +.+..+. ...+|+|+|||+|.+|++++..|.+.|.+|+++.|++..
T Consensus 158 ~g~~~H----S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 158 KGRILH----SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CceEEc----hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 212222 2222211 247899999999999999999999999999999988643
No 92
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.63 E-value=6.1e-15 Score=138.86 Aligned_cols=156 Identities=20% Similarity=0.271 Sum_probs=98.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..+.++|.|||+||||+++|.+|.++. +...|+|+|+.+.+ |- |..-.+.|..+..... ...+.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~-~~~~Vdi~Ek~PvP-FG---LvRyGVAPDHpEvKnv-----------intFt 80 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRH-PNAHVDIFEKLPVP-FG---LVRYGVAPDHPEVKNV-----------INTFT 80 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcC-CCCeeEeeecCCcc-cc---eeeeccCCCCcchhhH-----------HHHHH
Confidence 455679999999999999999999973 36799999999864 21 1110112222111111 12234
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH-------HHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-------DAL 200 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~-------~~~ 200 (489)
..+++.+..|..+.+| +..+.+.. -+-.||.+|||+|+.-.+...+||.+++++...+.+-.. +++
T Consensus 81 ~~aE~~rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l 153 (468)
T KOG1800|consen 81 KTAEHERFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL 153 (468)
T ss_pred HHhhccceEEEeccee------cccccHHH-HhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence 4455666667665443 11122211 123799999999997655567789888998876543211 111
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHH
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAV 227 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~ 227 (489)
--.+ .+.+++|||-|.+++++|..|.
T Consensus 154 e~dl-s~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 154 EPDL-SGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred Cccc-ccceEEEEccCchhhhhhhhhh
Confidence 1112 2679999999999999999875
No 93
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=2.7e-14 Score=143.32 Aligned_cols=244 Identities=18% Similarity=0.238 Sum_probs=143.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC--------CCccccCCCCCCCCCCCCCCccc
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGYLFPLDKKPARLPGFHTC 117 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~~--------~l~~~~~~~~~~~~~~~~~~~~~ 117 (489)
.++.++|+|||||+|||++|+.|++.|. +++++|+.+... |..+ .+.+.+.....+....++.++..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 3567899999999999999999999987 799999988754 1111 11111111112222222222221
Q ss_pred cCC--------CCCCCChhHHHHCCc--EEEeCCcEEEEeCCC---CEEEeCCC----eEEeeCcEEecCCCCC-CCCCC
Q 011267 118 VGS--------GGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPE 179 (489)
Q Consensus 118 ~~~--------~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~---~~v~~~~g----~~i~yd~lvlATG~~~-~~~p~ 179 (489)
... .....+.+++++.++ .+..+++|..++... -.|.+.+. .+.-||.|++|||... ..+|.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 110 111122344455565 477778888888765 25655443 4678999999999873 22555
Q ss_pred CCCC---CCCceEeecCHHHHHHH-HHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 180 KIGG---YLPGVHYIRDVADADAL-ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 180 ~~g~---~~~gv~~~~~~~~~~~~-~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
+++. ..+|- .++ +... ......+++|+|||.|.+|+|++..+.....+|.+..+ . + ......
T Consensus 160 ~~g~~~~~f~G~-~iH----S~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~-~-------~~~~~~ 225 (448)
T KOG1399|consen 160 IPGPGIESFKGK-IIH----SHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S-P-------KVHVEP 225 (448)
T ss_pred CCCCchhhcCCc-cee----hhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-c-c-------cccccc
Confidence 4442 22331 111 1111 11234679999999999999999999888878877654 1 0 000000
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
...+ ..++-.+. . |+.+. +++ .+.++++....+|.+|.|||+.-..++++..+
T Consensus 226 ~~~~-~~~~~~~~--~-i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 226 PEIL-GENLWQVP--S-IKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ccee-ecceEEcc--c-ccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 0000 11222222 2 44443 222 35567777889999999999987767766654
No 94
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.48 E-value=1.6e-11 Score=121.03 Aligned_cols=291 Identities=20% Similarity=0.289 Sum_probs=162.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCccccC-CCCCCCCCCCCC----Ccccc-C-
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYL-FPLDKKPARLPG----FHTCV-G- 119 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l~~~~~-~~~~~~~~~~~~----~~~~~-~- 119 (489)
+++|+|||+|++|++.|.+|.+.-.+...|.|+|+.+.. +|+.- .+...+ .+........|. |..+. +
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~-~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~ 79 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTE-EPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ 79 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCC-CchhhhccccccccccCCCCchHHHHHHHhc
Confidence 478999999999999999999986545569999998764 45421 110011 000000000011 00000 0
Q ss_pred -----------CCCCCC-------------ChhHHHHCC---cEEEeCCcEEEEeCC----CCEEEeCCCeEEeeCcEEe
Q 011267 120 -----------SGGERQ-------------TPEWYKEKG---IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIV 168 (489)
Q Consensus 120 -----------~~~~~~-------------~~~~~~~~~---i~~~~~~~V~~id~~----~~~v~~~~g~~i~yd~lvl 168 (489)
.+.... +..+.++.. +.++. ++++.+.+. ...+...+|....+|-+|+
T Consensus 80 ~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl 158 (474)
T COG4529 80 LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVL 158 (474)
T ss_pred ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEE
Confidence 000000 011112222 44443 455555554 2366778888889999999
Q ss_pred cCCCCCCCCCCCCCCCCCce-EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchhh
Q 011267 169 ATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR 245 (489)
Q Consensus 169 ATG~~~~~~p~~~g~~~~gv-~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~~ 245 (489)
|||..+...+. -..++++- .+..+...+.. +..+....+|+|+|+|++.++.-..|.++|. ++|++.|+. +.++
T Consensus 159 atgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~ 235 (474)
T COG4529 159 ATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR 235 (474)
T ss_pred eccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence 99987543222 11122221 13333333322 2234456679999999999999999999886 588888772 1000
Q ss_pred --------------------------------------------------------------------------------
Q 011267 246 -------------------------------------------------------------------------------- 245 (489)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (489)
T Consensus 236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr 315 (474)
T COG4529 236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR 315 (474)
T ss_pred CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence
Q ss_pred -hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEccCCCCCCc-----hhh--
Q 011267 246 -LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVS-----PFE-- 314 (489)
Q Consensus 246 -~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~aD~vi~a~G~~p~~~-----~~~-- 314 (489)
-+.+.+...+.+.+.+.-++++- .++..|.....+.....+... .+++++|.||.|+|..+... ++.
T Consensus 316 ~R~a~~v~~~~~~~~a~G~~~l~a--g~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl 393 (474)
T COG4529 316 FRLAPAVQAAVPQLLAEGLLELVA--GRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSL 393 (474)
T ss_pred hhhhHHHHhhhhHHhhcchhheec--CceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHH
Confidence 01122222222222222244554 566677655555332333222 24789999999999876542 333
Q ss_pred -hcCCee-c--CCcEEeCCCCCC------CCCCeEEeccccccC
Q 011267 315 -RVGLNS-S--VGGIQVDGQFRT------RMPGIFAIGDVAAFP 348 (489)
Q Consensus 315 -~~gl~~-~--~g~i~vd~~~~t------~~~~Iya~GD~a~~~ 348 (489)
+-|+.. + ..|+.|+++.+. ..++.||+|..+...
T Consensus 394 ~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~ 437 (474)
T COG4529 394 GENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGT 437 (474)
T ss_pred HhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCc
Confidence 334443 2 367889887764 468999999888754
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.47 E-value=6.2e-13 Score=102.03 Aligned_cols=80 Identities=39% Similarity=0.656 Sum_probs=74.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
+++|||||++|+|+|..|.++|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++ ++.+++++.++++ +. |+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~~~~~-~~-V~ 76 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHT-NTKVKEIEKDGDG-VE-VT 76 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEE-SEEEEEEEEETTS-EE-EE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEe-CCEEEEEEEeCCE-EE-EE
Confidence 589999999999999999999999999999999994 69999999999999999999999 9999999987766 66 88
Q ss_pred eCCC
Q 011267 289 LEDG 292 (489)
Q Consensus 289 ~~~g 292 (489)
++||
T Consensus 77 ~~~g 80 (80)
T PF00070_consen 77 LEDG 80 (80)
T ss_dssp EETS
T ss_pred EecC
Confidence 8886
No 96
>PRK09897 hypothetical protein; Provisional
Probab=99.24 E-value=4.1e-09 Score=109.10 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=95.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCccccCCCC--CCCCCCCCCCccc-------
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPL--DKKPARLPGFHTC------- 117 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l~~~~~~~~--~~~~~~~~~~~~~------- 117 (489)
+++|+|||||++|+++|.+|.+.+. ..+|+|+|+.... +|....-+..++... ...+...+.+..+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 4689999999999999999998764 5689999996543 244211111011000 0000000000000
Q ss_pred ------------cC-CCCCC-CC----hh-------HHHHCC--cEEEeCCcEEEEeCCCC--EEEeCC-CeEEeeCcEE
Q 011267 118 ------------VG-SGGER-QT----PE-------WYKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI 167 (489)
Q Consensus 118 ------------~~-~~~~~-~~----~~-------~~~~~~--i~~~~~~~V~~id~~~~--~v~~~~-g~~i~yd~lv 167 (489)
.. ...-+ .. .+ .+...| +.++.+++|++++.... .+++.+ +..+.+|+||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 00 00000 01 11 112334 67777789999987654 455544 4678999999
Q ss_pred ecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC
Q 011267 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (489)
Q Consensus 168 lATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~ 229 (489)
+|||..+...+ .+ .+ .++.+..+.. ..... .+.+|+|+|.|+++++++..|...
T Consensus 160 LAtGh~~p~~~--~~--~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDEE--EA--TR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCCC--hh--hc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 99997542211 11 11 2333333322 11222 368999999999999999988755
No 97
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.15 E-value=9.9e-11 Score=112.69 Aligned_cols=123 Identities=25% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcc-----ccCCCCC--CC-------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK-----GYLFPLD--KK------- 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-------y~~~~l~~-----~~~~~~~--~~------- 107 (489)
|+.+||+|||||+||++||..+.+.|. +|+|||+.+... --|+.+.+ .|+.... ..
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~ 77 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALA 77 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHH
Confidence 467899999999999999999999986 799999987532 11111111 0110000 00
Q ss_pred ---CCCCC------CCcccc---CCC---------CCCCChhHHHHCCcEEEeCCcEEEEeCC--CCEEEeCCCeEEeeC
Q 011267 108 ---PARLP------GFHTCV---GSG---------GERQTPEWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYG 164 (489)
Q Consensus 108 ---~~~~~------~~~~~~---~~~---------~~~~~~~~~~~~~i~~~~~~~V~~id~~--~~~v~~~~g~~i~yd 164 (489)
+.++. +..... |+. ..+-...-+++.|++++++++|.+++.+ .+.+.+.+|.++.+|
T Consensus 78 ~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 78 RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence 00000 000000 000 0011123346779999999999999987 478899999899999
Q ss_pred cEEecCCCCC
Q 011267 165 SLIVATGCTA 174 (489)
Q Consensus 165 ~lvlATG~~~ 174 (489)
.||+|||...
T Consensus 158 ~lilAtGG~S 167 (408)
T COG2081 158 SLILATGGKS 167 (408)
T ss_pred EEEEecCCcC
Confidence 9999999543
No 98
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.14 E-value=4.3e-09 Score=104.68 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=87.8
Q ss_pred hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCC-CCCchhhhc----
Q 011267 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAK-PTVSPFERV---- 316 (489)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~-p~~~~~~~~---- 316 (489)
|...+..+.+.+.+.+++.|++++. ++.|.++... ++++..|.+.++ ..+.+|.+|+|+|.. .+ .++++.
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~-g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~ 334 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLP-GDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSN-GLVAEFDKIY 334 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEE-CcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCH-HHHhhcCcee
Confidence 3445668888899999999999999 9999998754 566767776666 479999999999988 43 443332
Q ss_pred ----CCee--------------------cCCcEEeCCCCCC-----CCCCeEEeccccccCCccCCcccccccHHHHHHH
Q 011267 317 ----GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 367 (489)
Q Consensus 317 ----gl~~--------------------~~g~i~vd~~~~t-----~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~ 367 (489)
+++. ..=||.+|+++|. ..+|+||+|-+..++++..-.... -.|...
T Consensus 335 Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~----GVai~T 410 (419)
T TIGR03378 335 EPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGS----GVAVST 410 (419)
T ss_pred eeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCc----hhHHHH
Confidence 1211 1126899999984 389999999999987765322110 125555
Q ss_pred HHHHHHHH
Q 011267 368 AQHCIKAL 375 (489)
Q Consensus 368 g~~~a~~l 375 (489)
|-.||+.|
T Consensus 411 a~~aa~~i 418 (419)
T TIGR03378 411 ALHAAEQI 418 (419)
T ss_pred HHHHHHhh
Confidence 66666554
No 99
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.11 E-value=1.7e-10 Score=113.64 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=44.4
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
-|||.||.+.||++|++||+|.|+.......++++ ..+.-.+...|..+|+++.+.
T Consensus 341 mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 341 MGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred cccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 48999999999999999999999986544334433 345567888899999999864
No 100
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.06 E-value=1.9e-09 Score=100.34 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=77.1
Q ss_pred hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEccCCCCCCchhh-------
Q 011267 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE------- 314 (489)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~aD~vi~a~G~~p~~~~~~------- 314 (489)
|..++-.+.+.+.+.+++.|.-+.. +..|.+.+- .+++|+.|.+.+... +.+|..|+|+|.--...+..
T Consensus 253 PSllGiRl~~~L~~~f~~~Gg~~m~-Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~E 330 (421)
T COG3075 253 PSLLGIRLHNQLQRQFEQLGGLWMP-GDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYE 330 (421)
T ss_pred cchhhhhHHHHHHHHHHHcCceEec-CCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhc
Confidence 3445667888999999999999999 999999874 578888999888754 67999999999643322110
Q ss_pred ---hcCCe------------------ecCCcEEeCCCCCCC-----CCCeEEeccccccCCcc
Q 011267 315 ---RVGLN------------------SSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKM 351 (489)
Q Consensus 315 ---~~gl~------------------~~~g~i~vd~~~~t~-----~~~Iya~GD~a~~~~~~ 351 (489)
.+.+. ...=||.+|+++|.+ ..|+||+|.+...+++.
T Consensus 331 PIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi 393 (421)
T COG3075 331 PIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI 393 (421)
T ss_pred chhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence 01110 011268889998863 57999999999887765
No 101
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.06 E-value=2.9e-09 Score=105.90 Aligned_cols=215 Identities=20% Similarity=0.242 Sum_probs=120.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCC-CCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
++++||||||||+.|+++|+.|.+... +.+|+|+|++.....+...-..+.....- ..+..+..-....+ .....
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p-~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g---~~~~~ 76 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEP-DLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAG---NINEF 76 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCC-CceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHH---HHHHH
Confidence 467899999999999999999999974 67999999998876654443222221110 00100000000000 00113
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCC-CCCC----CCCCCCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEK----IGGYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~-~p~~----~g~~~~gv~~~~~~~~~~~~~~ 202 (489)
++.+++++.+. ...++++|+|-.... +... ....++.+.. .+.+++++
T Consensus 77 ~~~kq~~~~f~-----------------------~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~----ld~~~i~~ 129 (429)
T COG0579 77 AICKQLGIPFI-----------------------NCGKLSVATGEEEVERLEKLYERGKANGVFDLEI----LDKEEIKE 129 (429)
T ss_pred HHHHHhCCccc-----------------------ccCeEEEEEChHHHHHHHHHHHHHhhCCCcceee----cCHHHHHh
Confidence 33444442222 226888888854211 0000 0001221111 23444444
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
....-..- ++| -.++ ...... -...+...+.+.++++|+++.+ |++|+.|+..++|
T Consensus 130 ~eP~l~~~-~~a------------------al~~-p~~giV---~~~~~t~~l~e~a~~~g~~i~l-n~eV~~i~~~~dg 185 (429)
T COG0579 130 LEPLLNEG-AVA------------------ALLV-PSGGIV---DPGELTRALAEEAQANGVELRL-NTEVTGIEKQSDG 185 (429)
T ss_pred hCcccccc-cee------------------eEEc-CCCceE---cHHHHHHHHHHHHHHcCCEEEe-cCeeeEEEEeCCc
Confidence 32110000 000 1111 111111 1224566777888889999999 9999999987665
Q ss_pred cEEEEEeCCCcE-EEcCEEEEccCCCCCCchhhhcCCee
Q 011267 283 RVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 283 ~v~~v~~~~g~~-i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
+..+.+.+|++ ++|+.||.|.|.-.. .+++.+|+..
T Consensus 186 -~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 186 -VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred -eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence 55678888876 999999999998876 7777777765
No 102
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.94 E-value=7e-09 Score=107.07 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=39.1
Q ss_pred cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 321 ~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~-gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLA-SNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCCCCCCcch-hHHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999742111112222 23455677778888887753
No 103
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.92 E-value=1.9e-09 Score=114.15 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=79.4
Q ss_pred cCCCcEEEECCCH--HHHHHHHHHHhCCCcEEEEccCCcchhhhh-------------CHHHHHHHHHHHHhcCcEEEEc
Q 011267 205 EKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------------TPSLAQRYEQLYQQNGVKFVKV 269 (489)
Q Consensus 205 ~~~~~vvViG~G~--~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~-------------~~~~~~~l~~~l~~~Gv~~~~~ 269 (489)
...+++.|+|+++ ++.+++..+...+.+++++.+..+++.... ...+.+.+.+.+++.|+++++
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~- 233 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT- 233 (574)
T ss_pred CCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe-
Confidence 4567888999998 899999999999988887766655554211 235667788888899999999
Q ss_pred CceEEEEEeCCCCcEEEEEeCC--Cc-EEEcC-EEEEccCCCCC
Q 011267 270 GASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 309 (489)
Q Consensus 270 ~~~v~~i~~~~~~~v~~v~~~~--g~-~i~aD-~vi~a~G~~p~ 309 (489)
++.|+++..+ ++++.+|...+ ++ .+.++ .||+|+|..++
T Consensus 234 ~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 234 GTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999999854 57777777644 33 47786 79999998775
No 104
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.88 E-value=2.3e-08 Score=102.09 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=39.5
Q ss_pred cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 321 ~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..|||.||.+.||++|++||+|.++.......++.. -.+...+...|+.|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999742111111111 23556688888988888753
No 105
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.86 E-value=1.8e-09 Score=108.27 Aligned_cols=121 Identities=27% Similarity=0.359 Sum_probs=60.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcc------ccCCC--CCCCCCC--C---
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFP--LDKKPAR--L--- 111 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-------y~~~~l~~------~~~~~--~~~~~~~--~--- 111 (489)
|||+|||||+|||.||..+++.|. +|+|+|+++... --|+.++. .|... ....... +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 699999999999999999999876 799999987642 01111111 11110 0000000 0
Q ss_pred -----------CCCccccCCCC-----CCCC-------hhHHHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCc
Q 011267 112 -----------PGFHTCVGSGG-----ERQT-------PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGS 165 (489)
Q Consensus 112 -----------~~~~~~~~~~~-----~~~~-------~~~~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~ 165 (489)
.+.+....... ..+. ...+++.+++++.+++|.+|..+. ..|.++++.++.+|+
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 00000000000 0011 122356799999999999997643 457777888999999
Q ss_pred EEecCCCCCC
Q 011267 166 LIVATGCTAS 175 (489)
Q Consensus 166 lvlATG~~~~ 175 (489)
||||||+...
T Consensus 158 vILAtGG~S~ 167 (409)
T PF03486_consen 158 VILATGGKSY 167 (409)
T ss_dssp EEE----SSS
T ss_pred EEEecCCCCc
Confidence 9999998753
No 106
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.84 E-value=4.5e-08 Score=102.80 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+||||||+|.||++||.++++.|. +|+|||+...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence 456899999999999999999999875 7999999764
No 107
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.83 E-value=1.1e-07 Score=99.01 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=39.1
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.|||.||.+.||++|++||+|+|+.......++.. -.+...|...|+.+++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999742111111111 23556688888888888764
No 108
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.82 E-value=3.3e-08 Score=76.27 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=62.4
Q ss_pred ceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhcCCCCChh
Q 011267 388 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 464 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (489)
||||+||+.. +|++|.... +.+..++.+ .++..+|+++|+++|++. +|.+.++..++++++.+..++++
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 7999999975 999997643 677888876 789999999999999995 89999999999999999999998
Q ss_pred hhcCCCcH
Q 011267 465 KLQQASSV 472 (489)
Q Consensus 465 ~~~~~~~~ 472 (489)
.+.++..-
T Consensus 73 ~l~d~~~~ 80 (85)
T PF14759_consen 73 RLADPSVD 80 (85)
T ss_dssp HHHSTTSH
T ss_pred HhcCCCCC
Confidence 88776543
No 109
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.81 E-value=2.8e-08 Score=98.91 Aligned_cols=67 Identities=30% Similarity=0.489 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+..+...+.+.+++.|+++++ +++|+++..+ ++.+.+|.+.+|+ +.+|.||+|+|.... .++..++.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~-~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRT-GTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE-SEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccc-cccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 457788888889999999999 9999999864 5667679999997 999999999998764 45666654
No 110
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.78 E-value=1.1e-07 Score=92.08 Aligned_cols=111 Identities=19% Similarity=0.319 Sum_probs=88.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------------------------------------- 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-------------------------------------------- 242 (489)
...|+|||||+.|+.+|..+.+.|.+|.++++.+.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 356999999999999999999999999999977322
Q ss_pred -----------------hhhhhC-----HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 243 -----------------LQRLFT-----PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 243 -----------------l~~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
..+.|+ ..+.+.+...+++.||++++ +++|.+++.++ ....+.+.+|+++.||.+
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~-~~~v~~v~~~~--~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRT-RSRVSSVEKDD--SGFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEe-cceEEeEEecC--ceEEEEcCCCCEEEccEE
Confidence 001121 35667788899999999999 99999998654 334688899989999999
Q ss_pred EEccC--CCCCC-------chhhhcCCee
Q 011267 301 VIGIG--AKPTV-------SPFERVGLNS 320 (489)
Q Consensus 301 i~a~G--~~p~~-------~~~~~~gl~~ 320 (489)
|+|+| ..|.+ +++++.|++.
T Consensus 160 ilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 160 ILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 99999 45643 3678888765
No 111
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.77 E-value=7.2e-08 Score=101.84 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+||||||||.||++||.++++.+. ..+|+|||+...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 4799999999999999999998763 458999999754
No 112
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.77 E-value=8.5e-08 Score=101.51 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||+|.||++||.++++.+. ..+|+|||+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 35799999999999999999998863 458999999753
No 113
>PRK08275 putative oxidoreductase; Provisional
Probab=98.76 E-value=1.3e-07 Score=99.87 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||+|.||++||.++++.+. ..+|+|||+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 45799999999999999999998753 458999999864
No 114
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=5e-08 Score=103.32 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.++++.+. ..+|+|||+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 45799999999999999999998863 458999999754
No 115
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.75 E-value=6.4e-08 Score=98.02 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
...+.+.+.+.+++.|+++++ ++.|.++...+ +.+ .|.+.+| ++.||.||+|+|.... .+++.+|+
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~-~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRL-GAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEc-CCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 356777888888999999999 99999997543 333 5677776 7999999999998764 55555554
No 116
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.71 E-value=1.9e-07 Score=98.08 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=38.1
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
-|||.||.+.||++|++||+|+|+.......++.. -.+..++...|+.++..+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999753222222222 2345567777888877764
No 117
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.70 E-value=2.2e-07 Score=90.27 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=79.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc---ch--------hh----hhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~l--------~~----~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
+++|||+|+.|+++|..|.+.|.+|+++++.+. +. +. ..+.++...+.+.+++.|+++++ ++|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~--~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY--EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE--EEE
Confidence 589999999999999999999999999997641 11 11 12357788888999999999998 688
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++++..+ + ...+.+.+++++.+|.+|+|+|..|+..
T Consensus 80 ~~v~~~~-~-~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 80 IKVDLSD-R-PFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEEecC-C-eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 8887542 2 2356777888999999999999988643
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=2.1e-06 Score=90.77 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||+|.||++||.++++.|. +|+|||+.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence 46799999999999999999999875 799999875
No 119
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.68 E-value=1.6e-08 Score=106.64 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=77.0
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~-------l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
.++.++++|++.++++.+.. +.+++.+|+++...+..+. .++..+...+.+.+++.|+++++ ++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~-~t~v~~l~~ 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLL-NTPLTDLYV 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEe-CCEEEEEEE
Confidence 35678899999999998865 5566667776554443332 25667788888889999999999 999999985
Q ss_pred CCCCcEEEEEeC-CCc--EEEcC-EEEEccC-CCCCCchhhhc
Q 011267 279 GSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFERV 316 (489)
Q Consensus 279 ~~~~~v~~v~~~-~g~--~i~aD-~vi~a~G-~~p~~~~~~~~ 316 (489)
+ ++++.+|... +++ ++.++ .||+|+| +.+|.++++..
T Consensus 237 ~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~ 278 (557)
T PRK07843 237 E-DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAKY 278 (557)
T ss_pred e-CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHHh
Confidence 4 5677777664 443 47885 5888666 45555555443
No 120
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.67 E-value=1.9e-07 Score=99.09 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHH-HHHHHHHHhCCCcEEEEccCCcchhh-------------hhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 206 KAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQR-------------LFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 206 ~~~~vvViG~G~~g-~e~A~~l~~~g~~V~lv~~~~~~l~~-------------~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
...++.++|++.++ .+++..+...+..+.+..+..+++.. ..+..+...+.+.+++.|+++++ ++
T Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~-~t 238 (581)
T PRK06134 160 PLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWE-SA 238 (581)
T ss_pred ccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEc-CC
Confidence 34566678877665 67777776665554443322221111 12345667788889999999999 99
Q ss_pred eEEEEEeCCCCcEEEEEeC--CCc-EEEc-CEEEEccCCCCC
Q 011267 272 SIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT 309 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~--~g~-~i~a-D~vi~a~G~~p~ 309 (489)
.|+++..+ ++++.+|... ++. ++.+ +.||+|+|...+
T Consensus 239 ~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 239 PARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 99998754 5777776653 333 5788 999999998765
No 121
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.67 E-value=1.6e-07 Score=99.65 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=30.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 79999999999999999999876 7999998753
No 122
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.66 E-value=4.8e-08 Score=101.84 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=39.3
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
-|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999852111111111 23566788888888888753
No 123
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.66 E-value=4.7e-06 Score=87.64 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=39.7
Q ss_pred cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 321 ~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..|||.||.+.||++|++||+|+|+.......++.. -.+...|...|+.|++++..
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999742111111211 23556678888888888764
No 124
>PRK06847 hypothetical protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=95.32 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=73.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---------------Cccc------------cCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---------------LTKG------------YLF 102 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~---------------l~~~------------~~~ 102 (489)
+++||+|||||+||+++|..|++.|. +|+|+|+.+...-.... +... +..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 46799999999999999999999987 69999987642110000 0000 000
Q ss_pred CCCCCCCCCC--C-----Ccccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecC
Q 011267 103 PLDKKPARLP--G-----FHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (489)
Q Consensus 103 ~~~~~~~~~~--~-----~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlAT 170 (489)
........++ . ++... .......+.+.+.+.+++++.+++|+.++.... .+.+.+|.++.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 0000000000 0 00000 000000112223456899999999999876543 5667788889999999999
Q ss_pred CCCCC
Q 011267 171 GCTAS 175 (489)
Q Consensus 171 G~~~~ 175 (489)
|..+.
T Consensus 160 G~~s~ 164 (375)
T PRK06847 160 GLYSK 164 (375)
T ss_pred CCCcc
Confidence 98654
No 125
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=2.3e-07 Score=98.47 Aligned_cols=39 Identities=31% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.++++.|..+.+|+|||+...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 457999999999999999999998721247999998754
No 126
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=4.6e-07 Score=100.79 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.++++.|. +|+||++...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence 45799999999999999999999876 7999998763
No 127
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.61 E-value=1.1e-06 Score=90.41 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHhCCCcE------EEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC-CC--CcEEE
Q 011267 216 GYIGMEVAAAAVGWKLDT------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG-SD--GRVAA 286 (489)
Q Consensus 216 G~~g~e~A~~l~~~g~~V------~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~--~~v~~ 286 (489)
=.++.|+...+.+.-..+ .-+.+. +.- + .+.+...+.+.++++||+|++ +++|+++..+ ++ +++++
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft-~yn--q-yeSLV~PL~~~Le~~GV~f~~-~t~VtdL~~~~d~~~~~Vtg 265 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFT-KYN--Q-YESLVLPLIKYLEDHGVDFQY-GTKVTDIDFDITGGKKTATA 265 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCC-CCC--c-hhHHHHHHHHHHHhCCCEEEe-CCEEEEEEEcCCCCceEEEE
Confidence 357888888886652222 111111 111 1 367888899999999999999 9999999864 23 56888
Q ss_pred EEeC-CCc-----EEEcCEEEEccCCCC
Q 011267 287 VKLE-DGS-----TIDADTIVIGIGAKP 308 (489)
Q Consensus 287 v~~~-~g~-----~i~aD~vi~a~G~~p 308 (489)
|... +|+ ..+.|.||+++|.-.
T Consensus 266 I~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 266 IHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred EEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 8775 232 356899999999654
No 128
>PLN02463 lycopene beta cyclase
Probab=98.61 E-value=1.5e-07 Score=96.08 Aligned_cols=124 Identities=18% Similarity=0.263 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CccccC--CCC-CCCCCCCCCCc--------
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPGFH-------- 115 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~-l~~~~~--~~~-~~~~~~~~~~~-------- 115 (489)
....+||+|||||+||+++|..|++.|+ +|+|||+.+..++.+.. .+...+ ... +.....++...
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC
Confidence 3456899999999999999999999877 79999997654332110 000000 000 00000000000
Q ss_pred cccCCCC----CCCC----hhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 116 TCVGSGG----ERQT----PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 116 ~~~~~~~----~~~~----~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
....... ...+ .+.+.+.+++++. .+|.+++.... .|++++|.++.++.||.|+|....
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000000 0011 1122456888874 68888876543 677888988999999999998754
No 129
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.60 E-value=5e-07 Score=92.10 Aligned_cols=64 Identities=17% Similarity=0.351 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+...+.+.+++.|++++. ++.|++++.. ++.+ .+.+.+ +.++.+|.||+|+|.... .++..++
T Consensus 198 ~~~~~l~~~a~~~G~~i~~-~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~-~l~~~~~ 266 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRY-GQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR-ALAAMLG 266 (410)
T ss_pred HHHHHHHHHHHhCCCEEEc-CCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcChH-HHHHHhC
Confidence 5566777888999999999 9999999854 3333 233332 237999999999998754 4444433
No 130
>PRK10015 oxidoreductase; Provisional
Probab=98.60 E-value=1.4e-07 Score=96.22 Aligned_cols=123 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCcc---ccCCCCC--CCCC--CCC------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---GYLFPLD--KKPA--RLP------ 112 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~~---~~~~~~~--~~~~--~~~------ 112 (489)
+.++||+||||||||++||+.|++.|. +|+|||+.+....... .++. ..+.+.. ..+. ...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence 456899999999999999999999987 6999999875432110 0000 0000000 0000 000
Q ss_pred -------CCcccc-------C-CCC--CCCChhH----HHHCCcEEEeCCcEEEEeCCCCEE--EeCCCeEEeeCcEEec
Q 011267 113 -------GFHTCV-------G-SGG--ERQTPEW----YKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA 169 (489)
Q Consensus 113 -------~~~~~~-------~-~~~--~~~~~~~----~~~~~i~~~~~~~V~~id~~~~~v--~~~~g~~i~yd~lvlA 169 (489)
...... . ... +..+..| .++.|++++.+++|+.+..++..+ ...++.++.++.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 000000 0 000 0111222 345699999998999887654433 2334567999999999
Q ss_pred CCCCC
Q 011267 170 TGCTA 174 (489)
Q Consensus 170 TG~~~ 174 (489)
+|...
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99754
No 131
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.60 E-value=2.3e-07 Score=93.97 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CccccC---CCCCCC--CCCCCCCcc-cc-
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKGYL---FPLDKK--PARLPGFHT-CV- 118 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~---l~~~~~---~~~~~~--~~~~~~~~~-~~- 118 (489)
++++|||||||||||++||+.|++.|+ +|+|+|+.+...+.... ++...+ .+.... ...+.+... ..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~ 77 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPG 77 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecC
Confidence 367999999999999999999999986 79999998776543211 111000 000000 000000000 00
Q ss_pred ---------CCCC---CCCChhHH----HHCCcEEEeCCcEEEEeCCCC--EE-EeCCCeEEeeCcEEecCCCCC
Q 011267 119 ---------GSGG---ERQTPEWY----KEKGIEMIYQDPVTSIDIEKQ--TL-ITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 119 ---------~~~~---~~~~~~~~----~~~~i~~~~~~~V~~id~~~~--~v-~~~~g~~i~yd~lvlATG~~~ 174 (489)
+... ...+.+|+ ++.|.+++.++++..+..++. .+ ...++.++.++.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 78 EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred CceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0000 11222333 457999999999998876553 22 223336799999999999764
No 132
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.59 E-value=9.7e-07 Score=89.87 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+...+.+.+++.|++++. ++.|++++..+++.+..|++.+| ++.++.||+|+|.... .+.+..+
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~-~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~-~l~~~~g 248 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQ-NCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSS-VVAAMAG 248 (407)
T ss_pred HHHHHHHHHHHHCCCEEEe-CCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhH-HHHHHcC
Confidence 4555677888899999999 99999997544566667888777 6999999888776543 3444333
No 133
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.59 E-value=2.3e-07 Score=89.80 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=68.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCccc---cC----------------CCCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---YL----------------FPLDKKPAR 110 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--~l~~~---~~----------------~~~~~~~~~ 110 (489)
+||+|||||+||+++|..|++.|. +|+|+|+.+....... .+... .+ .........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 589999999999999999999886 7999999875422100 00000 00 000000000
Q ss_pred CCC---Cc-cccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeC-CCeEEeeCcEEecCCCCC
Q 011267 111 LPG---FH-TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 111 ~~~---~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~-~g~~i~yd~lvlATG~~~ 174 (489)
.+. .. ..........+.+...+.+++++.+++|+.+..+.. .+.+. ++.++.+|.+|+|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000 00 000000001112233456899999999988765444 34434 346799999999999764
No 134
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.58 E-value=8.9e-07 Score=95.66 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+..+...+.+.+++ |++++. ++.|+++...+ +.+ .|.+.+|+.+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~-~~~V~~i~~~~-~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHF-GHEVARLERED-DGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEe-CCEeeEEEEeC-CEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 34677778788888 999999 99999998543 444 377788877899999999998754
No 135
>PRK06834 hypothetical protein; Provisional
Probab=98.57 E-value=3.3e-07 Score=95.05 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCcc-------------ccCCCCCCC-----
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALTK-------------GYLFPLDKK----- 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~~~-~l~~-------------~~~~~~~~~----- 107 (489)
|..+||+||||||+|+++|..|++.|. +|+|||+.+...+ .|. .++. .+.......
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 77 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGF 77 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCcccccee
Confidence 356899999999999999999999987 7999998765321 111 1110 000000000
Q ss_pred ---CCCCCCCccccCCCCC--------CCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 108 ---PARLPGFHTCVGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 108 ---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
..+....... ..... ..+.+.+++.+++++.+++++++..+.. .+++.+|.++.+|+||.|.|..+
T Consensus 78 ~~~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 78 AATRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred eeEecccccCCCC-CCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 0000000000 00000 0011334566899999999999876554 45666777899999999999876
Q ss_pred C
Q 011267 175 S 175 (489)
Q Consensus 175 ~ 175 (489)
.
T Consensus 157 ~ 157 (488)
T PRK06834 157 L 157 (488)
T ss_pred C
Confidence 4
No 136
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.56 E-value=3e-07 Score=93.97 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCc----cccCCCC--CCCC-CCCC------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALT----KGYLFPL--DKKP-ARLP------ 112 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~----~~~~~~~--~~~~-~~~~------ 112 (489)
+.++||+||||||||++||..|++.|. +|+|||+.+....... .++ ..+ .+. ...+ .+..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~~gg~l~~~~~e~l-~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNVTGGRLYAHSLEHI-IPGFADSAPVERLITHEKLA 78 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcccccceechhhHHHH-hhhhhhcCcccceeeeeeEE
Confidence 456999999999999999999999987 6999999865432110 000 000 000 0000 0000
Q ss_pred -----C---Cccc-----c--CCCC---CCCChhH----HHHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEe
Q 011267 113 -----G---FHTC-----V--GSGG---ERQTPEW----YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIV 168 (489)
Q Consensus 113 -----~---~~~~-----~--~~~~---~~~~~~~----~~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvl 168 (489)
+ +... . .... ...+..| .++.|++++.+++|+++..+... ....++.++.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~ 158 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVIL 158 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEE
Confidence 0 0000 0 0000 0011222 24579999999999998654433 2345677899999999
Q ss_pred cCCCCC
Q 011267 169 ATGCTA 174 (489)
Q Consensus 169 ATG~~~ 174 (489)
|+|...
T Consensus 159 A~G~~s 164 (428)
T PRK10157 159 ADGVNS 164 (428)
T ss_pred EeCCCH
Confidence 999754
No 137
>PLN02815 L-aspartate oxidase
Probab=98.55 E-value=4.2e-06 Score=88.50 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
-|||.+|.+.||++|++||+|+|+.......++.. -.+...+...|+.++..+.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999842111111211 3355667778888887765
No 138
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=2.4e-07 Score=95.20 Aligned_cols=98 Identities=15% Similarity=0.305 Sum_probs=72.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||++|+.+|..|++.|. +|+|+++.+... + .... .+ .....+.
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l------~-----~~~~---~~-----------~~~~~~~ 207 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTIL------P-----REEP---SV-----------AALAKQY 207 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccC------C-----CCCH---HH-----------HHHHHHH
Confidence 35689999999999999999999875 799999876431 0 0000 00 0123466
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEE-EeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v-~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++++++|++++.+...+ ...++.++.||.+++|+|..|.
T Consensus 208 l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 788999999999999998765433 3345778999999999999886
No 139
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.1e-06 Score=91.87 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=37.6
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
-|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111112221 22445567778877777653
No 140
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.53 E-value=9.1e-07 Score=91.28 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHh----cC--cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 250 SLAQRYEQLYQQ----NG--VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 250 ~~~~~l~~~l~~----~G--v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.+...+.+.+++ .| +++++ ++.|++++..+ +....|.+.+| ++.||.||+|+|.... .+++.+|+.
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~-~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINL-NTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEe-CCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 567777788888 77 88999 99999998643 34456777777 6999999999998765 667777653
No 141
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.53 E-value=3.7e-07 Score=96.47 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=29.0
Q ss_pred cEEEEcCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~----~~g~~~~~V~li~~~~~ 88 (489)
||||||||.||++||.+++ +.|. +|+||++...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence 7999999999999999998 5554 7999999764
No 142
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.52 E-value=2.5e-07 Score=87.45 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC-------------CC-CC-CCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-------------KP-AR-LPG 113 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~-------------~~-~~-~~~ 113 (489)
...+||+|||||+||++||++|++.|+ +|+|+|+.+...... ...+.+++... .+ .. ..+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g 97 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG 97 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCc
Confidence 346899999999999999999999887 699999987543210 00011111000 00 00 000
Q ss_pred CccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC-EE---EeC-----------CCeEEeeCcEEecCCCCC
Q 011267 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~-~v---~~~-----------~g~~i~yd~lvlATG~~~ 174 (489)
............+.....+.|++++.+++|.++..+.. .+ .+. +...+.++.+|+|||...
T Consensus 98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 00000000001112233567999999988888764322 22 111 224689999999999754
No 143
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.51 E-value=1.1e-07 Score=99.63 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|..+ ++++..|++.+|+++.+|.||++++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~-~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRL-NAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEE-CCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence 46778888889999999999 9999999854 46667889999989999999999885
No 144
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.51 E-value=1.8e-06 Score=88.09 Aligned_cols=64 Identities=30% Similarity=0.493 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+...+.+.+++.|++++. ++.|++++.. ++.+..|++.++ ++.+|.||+|+|.... .++...+
T Consensus 202 ~~~~~l~~~~~~~G~~i~~-~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g 265 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRF-NTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHCCCEEEc-CCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhC
Confidence 5667777888899999999 9999999854 345555666655 7999999999998654 4444444
No 145
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.51 E-value=3.1e-07 Score=95.11 Aligned_cols=98 Identities=19% Similarity=0.326 Sum_probs=72.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||++|+.+|..|++.|. +|+|+++.+... |.+.. .+ .....+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~~~~~l 221 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGEDA-----------EV-----------SKVVAKAL 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCCH-----------HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999876421 10000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCC--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g--~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.+... +.+.+| .++.+|.+++|+|..|..
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 7889999999999998865543 444566 579999999999998863
No 146
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.51 E-value=6.5e-07 Score=89.99 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=34.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|||||+|||+||++|++.+. +.+|+|+|+++..+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p-~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGP-DVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCC-CCcEEEEecCCCCC
Confidence 369999999999999999999985 78999999987653
No 147
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.49 E-value=1.4e-06 Score=75.94 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=29.4
Q ss_pred EEEcCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011267 55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAY 88 (489)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g--~~~~~V~li~~~~~ 88 (489)
+|||+|++|++++.+|.++. .+..+|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 34679999999654
No 148
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.49 E-value=3.1e-06 Score=85.29 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
..+...+.+.+++.|++++. ++.|+++..+ ++.+ .|.+.++ ++.+|.||+|+|.... .+++.+++
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~-~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRD-GTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEEC-CCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhccc
Confidence 35667777888889999999 9999999854 3333 4666666 7999999999998653 45555544
No 149
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.48 E-value=9.3e-07 Score=88.92 Aligned_cols=110 Identities=19% Similarity=0.335 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc----------------------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------- 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~---------------------------------------------- 242 (489)
+|+|||||+.|+-+|..+++.|.+|.++++.+++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999988322
Q ss_pred --------------------hhhh-hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 243 --------------------LQRL-FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 243 --------------------l~~~-~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
.|.. -..++.+.+.+.+++.||++++ +++|.+++.. ++.+..|.+++++++.||.||
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~-~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHF-NTRVKSIEKK-EDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE--S--EEEEEEE-TTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEe-CCEeeeeeec-CCceeEeeccCcccccCCEEE
Confidence 1110 0134556788888999999999 9999999864 445567888777899999999
Q ss_pred EccCCCCC--C-------chhhhcCCee
Q 011267 302 IGIGAKPT--V-------SPFERVGLNS 320 (489)
Q Consensus 302 ~a~G~~p~--~-------~~~~~~gl~~ 320 (489)
+|+|.... + .+++++|...
T Consensus 160 LAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 160 LATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp E----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred EecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 99997643 1 3567777654
No 150
>PRK07190 hypothetical protein; Provisional
Probab=98.48 E-value=6.7e-07 Score=92.73 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCCC-Ccc---------ccC---CC----------
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERPA-LTK---------GYL---FP---------- 103 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-y~~~~-l~~---------~~~---~~---------- 103 (489)
.+..+||+||||||+|+++|..|++.|. +|+|||+.+... ..+.. +.. +++ ..
T Consensus 2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 2 STQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 3456899999999999999999999987 699999987531 11100 000 000 00
Q ss_pred --CCCCC-------CCCCCC--c--cccCCC-CCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEE
Q 011267 104 --LDKKP-------ARLPGF--H--TCVGSG-GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (489)
Q Consensus 104 --~~~~~-------~~~~~~--~--~~~~~~-~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lv 167 (489)
..... ..+.+. + ...+.. ....+.+.+.+.|++++.+++|+.+..+.. .+.+.+|+++.+++||
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vV 158 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVI 158 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEE
Confidence 00000 000000 0 000000 000012234567999999999999876543 4566778889999999
Q ss_pred ecCCCCC
Q 011267 168 VATGCTA 174 (489)
Q Consensus 168 lATG~~~ 174 (489)
.|+|...
T Consensus 159 gADG~~S 165 (487)
T PRK07190 159 GADGSRS 165 (487)
T ss_pred ECCCCCH
Confidence 9999865
No 151
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.47 E-value=4.2e-07 Score=85.66 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCC------CCCCCCCCCccc-cCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD------KKPARLPGFHTC-VGSGG 122 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~------~~~~~~~~~~~~-~~~~~ 122 (489)
..+||+|||||+||++||+.|++.|. +|+|+|++....... ...+.+++.. ....+..+.+.. .+...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 46899999999999999999999986 799999987643210 0000000000 000000000000 00000
Q ss_pred --------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--E---EEeC-----------CCeEEeeCcEEecCCCCC
Q 011267 123 --------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 123 --------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~---v~~~-----------~g~~i~yd~lvlATG~~~ 174 (489)
...+.+...+.+++++.+++|.++..++. . +.+. +...+.++.+|.|||...
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 01111223467999999999988775433 2 2222 234689999999999653
No 152
>PLN02612 phytoene desaturase
Probab=98.47 E-value=3.8e-06 Score=88.75 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
..+.+.+.+.+++.|.++++ ++.|++|..++++.+..+++.+|+++.+|.||+++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l-~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRL-NSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEe-CCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 45667888888889999999 999999987667777778888998999999999975
No 153
>PRK07236 hypothetical protein; Provisional
Probab=98.46 E-value=1.1e-06 Score=88.71 Aligned_cols=125 Identities=12% Similarity=0.015 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---cC-----CCCCCCCCCCCCC--
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL-----FPLDKKPARLPGF-- 114 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~--l~~~---~~-----~~~~~~~~~~~~~-- 114 (489)
+|+..+|+|||||++|+++|..|++.|+ +|+|+|+.+.....+. . +... .+ .............
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIY 79 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEE
Confidence 4677899999999999999999999987 6999999864311110 0 1100 00 0000000000000
Q ss_pred ccccCC-----CC------CCCChhHH-HH-CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 115 HTCVGS-----GG------ERQTPEWY-KE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 115 ~~~~~~-----~~------~~~~~~~~-~~-~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
....+. .. ...+...+ +. .+++++.+++|+++..+.. ++.+.+|+++.+|.||.|-|....
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 000000 00 00011111 11 2467889999999976544 567788999999999999997654
No 154
>PRK06184 hypothetical protein; Provisional
Probab=98.46 E-value=8.7e-07 Score=92.71 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCccccC-----------C
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGYL-----------F 102 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-~~--------------~~l~~~~~-----------~ 102 (489)
|+++||+||||||+|+++|..|+++|. +|+|||+.+...- .+ -.+...+. +
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~ 77 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIY 77 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEE
Confidence 356899999999999999999999987 6999999764310 00 00000000 0
Q ss_pred CCCCCCC--CCCC-CccccCCC----C-------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEe---CCCeEEee
Q 011267 103 PLDKKPA--RLPG-FHTCVGSG----G-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKY 163 (489)
Q Consensus 103 ~~~~~~~--~~~~-~~~~~~~~----~-------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~---~~g~~i~y 163 (489)
....... .+.. ........ . ...+.+.+.+.+++++.++++++++.+.. ++++ .++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a 157 (502)
T PRK06184 78 RDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRA 157 (502)
T ss_pred eCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEe
Confidence 0000000 0000 00000000 0 00112234456899999999999976544 3444 56678999
Q ss_pred CcEEecCCCCCC
Q 011267 164 GSLIVATGCTAS 175 (489)
Q Consensus 164 d~lvlATG~~~~ 175 (489)
|+||.|+|....
T Consensus 158 ~~vVgADG~~S~ 169 (502)
T PRK06184 158 RYLVGADGGRSF 169 (502)
T ss_pred CEEEECCCCchH
Confidence 999999998753
No 155
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.46 E-value=6.6e-07 Score=90.94 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCcc---------ccC---------------C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTK---------GYL---------------F 102 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~---------~~~---------------~ 102 (489)
++||+|||||++|+++|..|++.|. +.+|+|+|+.+..... + ..++. +++ .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 4799999999999999999999863 3489999997642110 0 00000 000 0
Q ss_pred C-CCCCCCCC--CCCccc--cCCCC---------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcE
Q 011267 103 P-LDKKPARL--PGFHTC--VGSGG---------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 166 (489)
Q Consensus 103 ~-~~~~~~~~--~~~~~~--~~~~~---------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~l 166 (489)
. ........ ..+... .+... ...+.+.+.+.+++++.+++|+.++.+.. .+.+.+|.++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0 00000000 000000 00000 00112233456899999999999976554 466678888999999
Q ss_pred EecCCCCCC
Q 011267 167 IVATGCTAS 175 (489)
Q Consensus 167 vlATG~~~~ 175 (489)
|.|+|....
T Consensus 160 I~AdG~~S~ 168 (403)
T PRK07333 160 VAADGARSK 168 (403)
T ss_pred EEcCCCChH
Confidence 999998654
No 156
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.45 E-value=2e-06 Score=88.81 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|...+++++++|++.+|+ ++.||.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l-~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRL-NSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeC-CCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 35667778888889999999 999999986666777788887665 7999999999864
No 157
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.45 E-value=1e-05 Score=76.32 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=93.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------h---------h------------------hCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------R---------L------------------FTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------~---------~------------------~~~ 249 (489)
.-.++|||+|+.|+-+|..|++.|.+|.++++...+.. . . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 45799999999999999999999999999998754310 0 0 112
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC-cEEEEEeCC-----------CcEEEcCEEEEccCCCCC-Cchh-hh
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPT-VSPF-ER 315 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~~-----------g~~i~aD~vi~a~G~~p~-~~~~-~~ 315 (489)
.+.+.+.+...+.|++++. ++.++++...+++ ++.+|.+.. ..++.|+.||.|+|.... ..++ +.
T Consensus 101 el~~~L~~~a~e~GV~I~~-~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFN-GTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEEC-CcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 3445666677788999999 9999998765443 577777642 247999999999997543 2332 33
Q ss_pred cCCeecC------CcEEeCC--C---CCC--CCCCeEEeccccc
Q 011267 316 VGLNSSV------GGIQVDG--Q---FRT--RMPGIFAIGDVAA 346 (489)
Q Consensus 316 ~gl~~~~------g~i~vd~--~---~~t--~~~~Iya~GD~a~ 346 (489)
.++.... +....+. . -.| -+|++|++|=.+.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~ 223 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVA 223 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhh
Confidence 3332210 0111110 0 013 4799999997775
No 158
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.43 E-value=8.4e-06 Score=84.55 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~ 307 (489)
..+...+.+.+++.|++++. +++++++.. +++++.+|... ++ ..+.++.||+|+|..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~-~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRY-DAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEc-CCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 45667778888899999999 999999985 35777777663 33 368999999999854
No 159
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.43 E-value=7.7e-07 Score=90.13 Aligned_cols=124 Identities=19% Similarity=0.334 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C-----CCcc---ccC-----CCCCC-C-CCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P-----ALTK---GYL-----FPLDK-K-PARL 111 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~--~-----~l~~---~~~-----~~~~~-~-~~~~ 111 (489)
..++||+|||||++|+++|..|+++|. +|+|||+.+...+.. + .++. .++ .+.-. . ...+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 456899999999999999999999987 699999976432210 0 0100 000 00000 0 0000
Q ss_pred CC-------------Cccc-cCCC---C-C--CC----ChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCc
Q 011267 112 PG-------------FHTC-VGSG---G-E--RQ----TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (489)
Q Consensus 112 ~~-------------~~~~-~~~~---~-~--~~----~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~ 165 (489)
.. +... .+.. . . .. +.+.+++.+++++.+++|+++..+.. ++++.+|.++.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~ 160 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAAL 160 (392)
T ss_pred cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCE
Confidence 00 0000 0000 0 0 00 11223456899999999999876543 56667888899999
Q ss_pred EEecCCCCCC
Q 011267 166 LIVATGCTAS 175 (489)
Q Consensus 166 lvlATG~~~~ 175 (489)
||.|+|..+.
T Consensus 161 vV~AdG~~S~ 170 (392)
T PRK08773 161 AIAADGAAST 170 (392)
T ss_pred EEEecCCCch
Confidence 9999998763
No 160
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.43 E-value=9.7e-07 Score=91.60 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|++|++ +++|++|..+ +++.+.++..+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~-~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRT-GAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEEC-CCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 46788899999999999999 9999999854 55556788888878999999998776
No 161
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.43 E-value=7.9e-06 Score=77.27 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------------------------------------hhCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-------------------------------------~~~~ 249 (489)
...|+|||+|+.|+-+|..|++.|.+|.++++...+... ....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999977543110 0112
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-----------CcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-----------GSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-----------g~~i~aD~vi~a~G~~p~ 309 (489)
.+...+.+..++.|++++. ++.|+++...+++++.++.... ..++.|+.||.|+|....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~-~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFN-GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHcCCEEEc-CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 4455566777889999999 9999999765554676666531 247999999999997543
No 162
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.43 E-value=6.8e-07 Score=90.41 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=68.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccccCC--C-CCCCCCCCCCC--------ccccC-
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--P-LDKKPARLPGF--------HTCVG- 119 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~~~~~--~-~~~~~~~~~~~--------~~~~~- 119 (489)
||+|||||+||+++|..|++.|. +|+|||+.+..+.... .+....+. . .......+.+. .....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 79999999999999999999876 7999999875443211 00000000 0 00000000100 00000
Q ss_pred CCC-------CCCChhHHHHCCcEEEeCCcEEEEeCC-C--CEEEeCCCeEEeeCcEEecCCCCC
Q 011267 120 SGG-------ERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 ~~~-------~~~~~~~~~~~~i~~~~~~~V~~id~~-~--~~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
... .....+.+.+.+++++. .+|..+..+ . ..+++.+|.++.++.+|.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 000 01111223455888864 578888755 2 356777888899999999999876
No 163
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.43 E-value=1.4e-05 Score=78.67 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=68.2
Q ss_pred HHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 226 l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
.+..++...++....+-+....-+.+.+.+.+.+++.|+++++ +++|.+++.. ++.+..|.+++|+++++|.||+|+|
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f-~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRF-NTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEe-eeEEEEEEec-CCceEEEEccCCcEEecCEEEEccC
Confidence 3445555555443333333234567888899999999999999 9999999854 5556789999999999999999999
Q ss_pred CCCCCch---hhhcCCeec
Q 011267 306 AKPTVSP---FERVGLNSS 321 (489)
Q Consensus 306 ~~p~~~~---~~~~gl~~~ 321 (489)
......+ .++.|+...
T Consensus 228 rsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 228 RSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred cchHHHHHHHHHhcCcccc
Confidence 9887332 344455543
No 164
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.42 E-value=1.6e-06 Score=79.10 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=67.6
Q ss_pred EEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchh--------------h----------------------------hh
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF 247 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~--------------~----------------------------~~ 247 (489)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. . ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998732200 0 01
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC--CCCCc
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTVS 311 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~--~p~~~ 311 (489)
.+++.+++++..++.++++.+ +++|+++..++++ ..|++.+++++.||.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~-~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRF-NTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEET-S--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCccccc-CCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 134557788888999999999 9999999987655 4688899988999999999997 55533
No 165
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.41 E-value=2e-06 Score=87.23 Aligned_cols=99 Identities=26% Similarity=0.377 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchh-h-hhCHHHH---------HHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-R-LFTPSLA---------QRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~-~-~~~~~~~---------~~l~~~l~~~Gv~~~~~~~~v 273 (489)
.++++|||||+.|+.+|..|++.+. +|+++++.+.+.- + .+...+. ..-.+.+++.||+++. ++.|
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-g~~V 81 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHS-GVTI 81 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEc-CCEE
Confidence 4689999999999999999999876 6899987653211 0 0111110 0112446778999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
+.+... .+ .|.+++|+++.+|.+|+|||.+|..
T Consensus 82 ~~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 82 KTLGRD--TR--ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEECC--CC--EEEECCCCEEEcCEEEEccCCCCCC
Confidence 999743 22 4677889899999999999999863
No 166
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.39 E-value=6.7e-07 Score=68.37 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=58.2
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|+|||||+.|+.+|..|++.|. +|+||++.+... +.+... + .....+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~~-----------~-----------~~~~~~~l~~ 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDPD-----------A-----------AKILEEYLRK 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSHH-----------H-----------HHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCHH-----------H-----------HHHHHHHHHH
Confidence 58999999999999999999875 899999987632 111100 0 1234567888
Q ss_pred CCcEEEeCCcEEEEeCCCCE--EEeCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQT--LITNSG 158 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~--v~~~~g 158 (489)
.|+++++++.+.+++.+... |+++||
T Consensus 53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 99999999999999876543 666665
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.39 E-value=3.9e-06 Score=87.86 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=80.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccch-----------hhhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~l-----------~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
...+++|||||+.|+.+|..+++.|.+|++++.. ..+. +....+++.+.+.+.+++.|++++. +++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~-~~~ 289 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLME-NQR 289 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEc-CCE
Confidence 3468999999999999999999999999998642 1111 1123467778888889999999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
|+++...++ ...+.+++|+.+.+|.+|+|+|..|.
T Consensus 290 V~~I~~~~~--~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 290 AKKIETEDG--LIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEEecCC--eEEEEECCCCEEEeCEEEECCCCCcC
Confidence 999975432 23567788889999999999999875
No 168
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.38 E-value=1.2e-06 Score=87.98 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCC-----CCCCCCCc--c-----c-cC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK-----PARLPGFH--T-----C-VG 119 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~-----~~~~~~~~--~-----~-~~ 119 (489)
||+|||||+||+++|.+|++... +.+|+|||+++..++....... ++...... ...++... . . ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~-~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWC-FWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccc-cccccccchHHHHheecCceEEEeCCCceEEcc
Confidence 89999999999999999955543 5689999998876433221111 11000000 00111100 0 0 00
Q ss_pred -CCCCCCChhH---HHH---CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 120 -SGGERQTPEW---YKE---KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 -~~~~~~~~~~---~~~---~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+......++ +.+ .+...+.+++|.+|+.... .+.+.+|.++.++.+|-|+|..+
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 0000111112 111 1234556689999987765 77889999999999999999554
No 169
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.37 E-value=1.4e-06 Score=88.19 Aligned_cols=124 Identities=18% Similarity=0.281 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCcc---------ccCCCCCC---CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTK---------GYLFPLDK---KP 108 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--------~l~~---------~~~~~~~~---~~ 108 (489)
.+.+||+|||||++|+++|..|++.|+ +|+|||+.+..++... .++. +++..... .+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP 79 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence 456899999999999999999999987 7999998764322110 0000 00000000 00
Q ss_pred -CC-----CCCC-cccc----C-CC--CC---CCChhH----HHHC-CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeC
Q 011267 109 -AR-----LPGF-HTCV----G-SG--GE---RQTPEW----YKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (489)
Q Consensus 109 -~~-----~~~~-~~~~----~-~~--~~---~~~~~~----~~~~-~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd 164 (489)
.. .... .... . .. .. ..+... +.+. +++++.+++++.+..+.. .+.+.+|.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 00 0000 0000 0 00 00 001111 2333 889998889999875443 4666788889999
Q ss_pred cEEecCCCCCC
Q 011267 165 SLIVATGCTAS 175 (489)
Q Consensus 165 ~lvlATG~~~~ 175 (489)
.||.|.|....
T Consensus 160 ~vI~AdG~~S~ 170 (391)
T PRK08020 160 LVIGADGANSQ 170 (391)
T ss_pred EEEEeCCCCch
Confidence 99999998653
No 170
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.37 E-value=6.9e-06 Score=84.56 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH-hcCcEEEEcCceEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 250 SLAQRYEQLYQ-QNGVKFVKVGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 250 ~~~~~l~~~l~-~~Gv~~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.+.+.+.+.+. ..|+++++ ++.|+.+...+++.. .+. +.+++ ++.||.||+|.|.... .+++.+|+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~-~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKY-NHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEe-CCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 55566766665 45999999 999999986534432 233 34452 6899999999999885 777777765
No 171
>PLN02697 lycopene epsilon cyclase
Probab=98.37 E-value=1e-06 Score=91.48 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=67.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CccccC--CCCCC-CCCCCCCCcc--------c
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPLDK-KPARLPGFHT--------C 117 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~-l~~~~~--~~~~~-~~~~~~~~~~--------~ 117 (489)
..+||+||||||||+++|..|++.|. +|+|||+.. ++.... .+...+ ..... ....+++... .
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 46899999999999999999999987 799999753 222110 100000 00000 0000000000 0
Q ss_pred cCCCCC-C---C----ChhHHHHCCcEEEeCCcEEEEeCCCC--E-EEeCCCeEEeeCcEEecCCCCC
Q 011267 118 VGSGGE-R---Q----TPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 118 ~~~~~~-~---~----~~~~~~~~~i~~~~~~~V~~id~~~~--~-v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+.... . . +.+.+.+.++++. +++|+.+..+.. . +.+.+|.++.++.+|.|+|...
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000 0 0 1112244588884 578988875433 2 4567788899999999999876
No 172
>PRK09126 hypothetical protein; Provisional
Probab=98.36 E-value=2.7e-06 Score=86.17 Aligned_cols=124 Identities=23% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-------CCcc---------ccC---CCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-------ALTK---------GYL---FPLDKKPA 109 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-------~l~~---------~~~---~~~~~~~~ 109 (489)
|+++||+|||||++|+++|..|++.|+ +|+|+|+.+......+ .++. +++ ......+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~ 77 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPL 77 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCcc
Confidence 346899999999999999999999987 6999999865211000 0000 000 00000000
Q ss_pred -C-------CC---CCccc-cCCCC--C----CCChh-HH----HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeC
Q 011267 110 -R-------LP---GFHTC-VGSGG--E----RQTPE-WY----KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (489)
Q Consensus 110 -~-------~~---~~~~~-~~~~~--~----~~~~~-~~----~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd 164 (489)
. .. .+... ..... . ....+ .+ +..+++++.+++|++++.... .|.+++|.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~ 157 (392)
T PRK09126 78 RDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTAR 157 (392)
T ss_pred ceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeC
Confidence 0 00 00000 00000 0 00011 11 235899999999999875443 5667788899999
Q ss_pred cEEecCCCCCC
Q 011267 165 SLIVATGCTAS 175 (489)
Q Consensus 165 ~lvlATG~~~~ 175 (489)
.+|.|.|....
T Consensus 158 ~vI~AdG~~S~ 168 (392)
T PRK09126 158 LLVAADSRFSA 168 (392)
T ss_pred EEEEeCCCCch
Confidence 99999998654
No 173
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.36 E-value=2.7e-06 Score=85.99 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=34.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.++.+||+|||||++|+++|..|++.|. +|+|||+.+..
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~~ 42 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPPY 42 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCCC
Confidence 4556899999999999999999999887 79999998653
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.35 E-value=5.5e-06 Score=86.89 Aligned_cols=100 Identities=26% Similarity=0.389 Sum_probs=80.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccc-----------hhhhhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~-----------l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
...++|||||+.|+.+|..++++|.+|++++.. .++ .+...++++.+.+.+.+++.|+++++ +++|
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~-~~~V 289 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMN-LQRA 289 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEc-CCEE
Confidence 458999999999999999999999999998753 111 01123467888899999999999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+++...+ + ...|.+.+|+++.+|.||+|+|..|.
T Consensus 290 ~~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 290 SKLEPAA-G-LIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred EEEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcC
Confidence 9998643 2 23577788889999999999999875
No 175
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.35 E-value=1.9e-06 Score=88.35 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=74.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+|+|||||++|+.+|..|++.|. +|+++++.+... . +.+.. .+ .....+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~-~-~~~~~-----------~~-----------~~~~~~~l 189 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERIL-N-KLFDE-----------EM-----------NQIVEEEL 189 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccC-c-cccCH-----------HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999876420 0 00000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.++++.+++.+...+.+.+|+++.+|.+++|+|..|.
T Consensus 190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 788999999999999988766556678889999999999998875
No 176
>PRK07233 hypothetical protein; Provisional
Probab=98.35 E-value=1.6e-06 Score=88.91 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ +++|++|+.++ +.+..+. .+++++.+|.||+|+..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~-~~~V~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRL-GTPVTSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEe-CCCeeEEEEcC-CceEEEE-eCCceEECCEEEECCCH
Confidence 35677888888889999999 99999998643 4443343 56678999999999875
No 177
>PRK06847 hypothetical protein; Provisional
Probab=98.35 E-value=5.8e-06 Score=83.18 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=79.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------------- 244 (489)
+..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 356899999999999999999999999999987642100
Q ss_pred ----h----------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEcc
Q 011267 245 ----R----------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 304 (489)
Q Consensus 245 ----~----------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~ 304 (489)
. ...+.+.+.+.+.+++.|+++++ ++++++++..+ +. ..+.+.+|+++.+|.||.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~-~~-~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRL-GTTVTAIEQDD-DG-VTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEe-CCEEEEEEEcC-CE-EEEEEcCCCEEEcCEEEECc
Confidence 0 00134456677777788999999 99999998543 33 35778899999999999999
Q ss_pred CCCCCC
Q 011267 305 GAKPTV 310 (489)
Q Consensus 305 G~~p~~ 310 (489)
|..+..
T Consensus 160 G~~s~~ 165 (375)
T PRK06847 160 GLYSKV 165 (375)
T ss_pred CCCcch
Confidence 987754
No 178
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.34 E-value=4.6e-06 Score=82.37 Aligned_cols=95 Identities=25% Similarity=0.452 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccc-----------------------------------------h---
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------------------------------------L--- 243 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~-----------------------------------------l--- 243 (489)
.|+|||||..|+|+|..+++.|.+|.++... +.+ +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999998322 111 0
Q ss_pred --h------hhhC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 244 --Q------RLFT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 244 --~------~~~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
+ .+.| ..+...+++.+++ .+++++. .+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~--~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ--GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE--S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE--cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0 0122 2455667777777 6789876 78999975 468999999999999999999999998
No 179
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.34 E-value=1.9e-06 Score=89.07 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+..+...+.+.+++.|++++. ++.|++++. ++. ..|.+.+| ++.||.||+|+|...
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~-~t~V~~i~~--~~~-~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHE-NTPMTGLEE--GQP-AVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEEC-CCeEEEEee--CCc-eEEEeCCc-EEECCEEEEcccccc
Confidence 446777888889999999999 999999974 222 35777777 699999999999654
No 180
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.34 E-value=1.4e-05 Score=82.91 Aligned_cols=68 Identities=21% Similarity=0.453 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 249 PSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 249 ~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
..+.+.+.+.+++.| +++++ ++.|++++..+++.+ .+.+ .+|+ ++.|+.||+|+|.... .+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~-~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQL-GHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEe-CCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 356777778888876 89999 999999986555533 2333 3453 6999999999998765 677777665
No 181
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.33 E-value=1.8e-05 Score=82.69 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe--CCC--cEEEcCEEEEccC-CCCCCchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g--~~i~aD~vi~a~G-~~p~~~~~~~ 315 (489)
+..+...+.+.+++.|+++++ ++.++++.. +++++.+|.. .++ .++.++.||+|+| +.+|.+++++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~-~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFV-NADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEe-CCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 345667788888999999999 999999985 4577766665 343 3689999999998 5666555544
No 182
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.33 E-value=3.1e-06 Score=87.18 Aligned_cols=102 Identities=24% Similarity=0.451 Sum_probs=72.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcc------hhhh----hC--HHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL------LQRL----FT--PSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~------l~~~----~~--~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++++|||+|+.|+.+|..|++++. +|+++++.+.+ ++.. .. .++.....+.+++.|++++. ++.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKT-EHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEe-cCEE
Confidence 379999999999999999998764 89999988753 1111 11 12233344667888999999 9999
Q ss_pred EEEEeCCCCcEEEEEe-CCCcEEE--cCEEEEccCCCCCCch
Q 011267 274 KNLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVSP 312 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~-~~g~~i~--aD~vi~a~G~~p~~~~ 312 (489)
+++..+ +..+ .+.. .+++++. +|.+|+|||.+|+.+.
T Consensus 80 ~~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 80 VKVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 999753 2222 2332 2356666 9999999999987543
No 183
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.31 E-value=4e-06 Score=84.61 Aligned_cols=123 Identities=15% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCccc---c-----CCCCC----CCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTKG---Y-----LFPLD----KKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--------~l~~~---~-----~~~~~----~~~~ 109 (489)
+.+||+|||||++|+++|..|++.|+ +|+|+|+.+...+... .++.. . +.+.- ..+.
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 35799999999999999999999987 7999998752222110 11100 0 00000 0000
Q ss_pred -C---------CCCCccc---cCC-CCC--CC-ChhH----HHH-CCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCc
Q 011267 110 -R---------LPGFHTC---VGS-GGE--RQ-TPEW----YKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGS 165 (489)
Q Consensus 110 -~---------~~~~~~~---~~~-~~~--~~-~~~~----~~~-~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~ 165 (489)
. ...+... ... ... .. +... +.+ .+++++.+++|++++.+. .++++.+|.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 0 0000000 000 000 00 0111 112 378999999999987544 367888999999999
Q ss_pred EEecCCCCCC
Q 011267 166 LIVATGCTAS 175 (489)
Q Consensus 166 lvlATG~~~~ 175 (489)
||.|+|....
T Consensus 159 vIgADG~~S~ 168 (384)
T PRK08849 159 VIGADGANSQ 168 (384)
T ss_pred EEEecCCCch
Confidence 9999998754
No 184
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.31 E-value=7.5e-06 Score=82.06 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+...+.+.+.+. |++++. ++.|++++.. .|.+.+|+ +.||.||+|+|...+
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~-~t~V~~i~~~------~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHW-NTAVTSVETG------TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEe-CCeEEEEecC------eEEeCCCc-EEeCEEEECCCCChh
Confidence 45666677776665 999999 9999999632 46777774 789999999998654
No 185
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.30 E-value=3.7e-05 Score=79.04 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------------------- 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~---------------------------------------- 245 (489)
..++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 4588999999999999999999999999999876421000
Q ss_pred ----h---------------hCHHHHHHHHHHHHhcCcE--EEEcCceEEEEEeCCCCcEEEEEeCCC--c--EEEcCEE
Q 011267 246 ----L---------------FTPSLAQRYEQLYQQNGVK--FVKVGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTI 300 (489)
Q Consensus 246 ----~---------------~~~~~~~~l~~~l~~~Gv~--~~~~~~~v~~i~~~~~~~v~~v~~~~g--~--~i~aD~v 300 (489)
. -..++.+++++..++.|++ +.+ +++|++++..++. ..|.+.++ . +..+|.|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~-~t~V~~V~~~~~~--w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRF-ETEVVRVEPVDGK--WRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEe-cCEEEEEeecCCe--EEEEEEcCCCceEEEEcCEE
Confidence 0 0135677788888888988 888 9999999864332 24555432 2 4679999
Q ss_pred EEccC--CCCCCc
Q 011267 301 VIGIG--AKPTVS 311 (489)
Q Consensus 301 i~a~G--~~p~~~ 311 (489)
|+|+| ..|+.+
T Consensus 166 IvAtG~~~~P~~P 178 (461)
T PLN02172 166 VVCNGHYTEPNVA 178 (461)
T ss_pred EEeccCCCCCcCC
Confidence 99999 466644
No 186
>PRK08244 hypothetical protein; Provisional
Probab=98.29 E-value=2.9e-06 Score=88.63 Aligned_cols=122 Identities=17% Similarity=0.305 Sum_probs=70.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCccccCCCC----------C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGYLFPL----------D 105 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-y~~--------------~~l~~~~~~~~----------~ 105 (489)
++||+||||||+|+++|..|++.|. +|+|||+.+... ..+ -.+...+.... .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 4799999999999999999999987 799999976531 111 00000000000 0
Q ss_pred CCCCCCCCCccc------cCC-CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCE--EEeC--CC-eEEeeCcEEecCCCC
Q 011267 106 KKPARLPGFHTC------VGS-GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITN--SG-KLLKYGSLIVATGCT 173 (489)
Q Consensus 106 ~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~--v~~~--~g-~~i~yd~lvlATG~~ 173 (489)
.....+...... ... .....+.+.+++.+++++.+++++++..+... +.+. +| .++.+|+||.|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 000000000000 000 00001112334568999999999998765543 3333 45 479999999999987
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 159 S~ 160 (493)
T PRK08244 159 SI 160 (493)
T ss_pred hH
Confidence 53
No 187
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.29 E-value=1.8e-05 Score=80.15 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=62.7
Q ss_pred HHHHHHhCCCcEEEEccCCcchhh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 222 VAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 222 ~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
+...+.++|.+++..... ++.+. .....+.+.+.+.+++.|+++++ ++.|+++...+ + ...+++ +++++.+|.|
T Consensus 78 ~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~-~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 78 LIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILT-NSKVKSIKKDD-N-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEe-CCEEEEEEecC-C-eEEEEE-CCcEEEcCEE
Confidence 334455667666654332 33321 12457788888999999999999 99999997543 3 334666 4568999999
Q ss_pred EEccCCCCC---------CchhhhcCCee
Q 011267 301 VIGIGAKPT---------VSPFERVGLNS 320 (489)
Q Consensus 301 i~a~G~~p~---------~~~~~~~gl~~ 320 (489)
|+|+|.... ..+++++|...
T Consensus 153 IlAtG~~s~p~~gs~G~g~~la~~lG~~i 181 (400)
T TIGR00275 153 ILATGGLSYPQLGSTGDGYEIAESLGHTI 181 (400)
T ss_pred EECCCCcccCCCCCCcHHHHHHHHCCCCE
Confidence 999997532 13566666653
No 188
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.29 E-value=2.1e-06 Score=78.45 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=31.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+|+|||+|+||++||..|++.|+ +|||+||....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCc
Confidence 579999999999999999999987 79999998643
No 189
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.29 E-value=3.7e-06 Score=85.03 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+.+||+|||||+||+++|..|++.|. +|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence 45799999999999999999999987 79999998663
No 190
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.29 E-value=6.5e-06 Score=84.13 Aligned_cols=99 Identities=23% Similarity=0.363 Sum_probs=72.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhh----------CHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~----------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
..++++|||||+.|+.+|..|...+.+|++|++.+.+.-... ...+...+...++..|++++. .+|+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~--~~V~~ 86 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR--AVVYD 86 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE--EEEEE
Confidence 457899999999999999999777789999998875422111 112333355667778899876 78999
Q ss_pred EEeCCCCcEEEEEe----------CCCcEEEcCEEEEccCCCCCC
Q 011267 276 LEAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 276 i~~~~~~~v~~v~~----------~~g~~i~aD~vi~a~G~~p~~ 310 (489)
|+.+ .+ .|.+ .+|+++++|.+|+|+|..|+.
T Consensus 87 Id~~--~~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 87 VDFE--EK--RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred EEcC--CC--EEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence 9743 22 2333 456789999999999999864
No 191
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.29 E-value=2.2e-06 Score=78.00 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--hhhCH-----------HHH--H--HHHHHHHhcCcEEEEcCc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--~~~~~-----------~~~--~--~l~~~l~~~Gv~~~~~~~ 271 (489)
+|+|||||+.|+.+|..|++.+.+++++++.+.... ..+.. ... . .+.+.+...+++++. ++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRL-NA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEH-HH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEee-cc
Confidence 589999999999999999999999999977653211 00000 011 1 334445778999988 89
Q ss_pred eEEEEEeCCCC------cEEEEEeCCCcEEEcCEEEEccCCCCCCchhhh
Q 011267 272 SIKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 315 (489)
Q Consensus 272 ~v~~i~~~~~~------~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~ 315 (489)
++.++...... .+......++.++.+|.+|+|+|..|+...++.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g 129 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG 129 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence 99999865331 111223455678999999999999887554443
No 192
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.28 E-value=9.6e-06 Score=83.90 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE---eCCC--cEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~---~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
+..+...+.+.+++.|+++++ +++|++++..+++.+ .+. +.+| .++.+|.||+|+|.... .+++.+|+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~-~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRF-GHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-CCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 346777888888889999999 999999986544433 233 2334 26899999999998764 667777765
No 193
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.27 E-value=1.9e-05 Score=79.39 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhh
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
..+...+.+.+.+.|++++. ++.|+++...+ +.+ .|.+++| ++.+|.||+|+|.... .++.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~-~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~~-~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLF-NEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWVK-DLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCEEEC-CCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcchh-hhcc
Confidence 45556666777889999999 99999998643 333 5777777 7999999999998654 4444
No 194
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.27 E-value=3e-05 Score=78.94 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.++.+.+.+.++..|.++++ ++.|++|..++++++..|++.+|+++.|+.||......|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L-~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYML-NTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEc-CCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 46778888888999999999 9999999876667778899999999999999999888876
No 195
>PRK08013 oxidoreductase; Provisional
Probab=98.25 E-value=4.8e-06 Score=84.52 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CC-CCcc---------ccCCCCCCC-CCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RP-ALTK---------GYLFPLDKK-PARL 111 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-------~~-~l~~---------~~~~~~~~~-~~~~ 111 (489)
+.+||+||||||+|+++|..|++.|+ +|+|+|+.+...-. |. .++. +++...... ...+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence 45899999999999999999999987 79999987652210 00 0000 000000000 0000
Q ss_pred CCC----------ccc----cCCCC---CC---CChhH----HHH-CCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeC
Q 011267 112 PGF----------HTC----VGSGG---ER---QTPEW----YKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG 164 (489)
Q Consensus 112 ~~~----------~~~----~~~~~---~~---~~~~~----~~~-~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd 164 (489)
.+. ... .+... .. .+... ..+ .+++++.+++|+.++.+. -++++.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 000 000 00000 00 00111 223 278999999999986544 35667789899999
Q ss_pred cEEecCCCCCC
Q 011267 165 SLIVATGCTAS 175 (489)
Q Consensus 165 ~lvlATG~~~~ 175 (489)
.||-|.|....
T Consensus 159 lvVgADG~~S~ 169 (400)
T PRK08013 159 LVVGADGANSW 169 (400)
T ss_pred EEEEeCCCCcH
Confidence 99999997653
No 196
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.25 E-value=3e-06 Score=86.27 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+.+++++.++++.+++.... +|++.+|.++.+|.||.|.|....
T Consensus 123 ~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 123 HDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred hcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 345899999999999876543 566788888999999999998654
No 197
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.25 E-value=6e-06 Score=82.72 Aligned_cols=97 Identities=20% Similarity=0.335 Sum_probs=72.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcch-----hhh----h-CHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL-----QRL----F-TPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l-----~~~----~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+|+|||||+.|+.+|..+.++ +.+|+++++.+... +.. . ..++...+.+.+++.|++++. + .|+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~-~-~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVI-A-EATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEE-E-EEEE
Confidence 589999999999999999643 57899999876431 111 0 122333456677788999988 4 8999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.+ ++ .|.+++|+++.+|.+|+|+|..|+..
T Consensus 79 id~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 79 IDPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred Eecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 9743 22 47788998999999999999998744
No 198
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.23 E-value=5.5e-06 Score=90.89 Aligned_cols=97 Identities=20% Similarity=0.443 Sum_probs=74.1
Q ss_pred EEEECCCHHHHHHHHHHHhCC---CcEEEEccCCcc------hhhhhC-----HHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 210 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g---~~V~lv~~~~~~------l~~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
++|||+|+.|+.+|..|++++ .+|+++++.+++ ++..+. +++.....+.+++.||++++ ++.|+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~-g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYT-GETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEc-CCeEEE
Confidence 589999999999999988764 589999988764 222221 12222335677889999999 999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.. .+ .|.+.+|+++.+|.+|+|||..|+..
T Consensus 80 Id~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 80 IDTD--QK--QVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred EECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence 9843 22 47788898999999999999998754
No 199
>PRK05868 hypothetical protein; Validated
Probab=98.23 E-value=5e-06 Score=83.44 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CC---------CCcccc-----------CC-C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------RP---------ALTKGY-----------LF-P 103 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~------~~---------~l~~~~-----------~~-~ 103 (489)
++||+|||||++|+++|..|++.|+ +|+|+|+.+...-. ++ .+...+ +. .
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence 4689999999999999999999987 69999987653110 00 000000 00 0
Q ss_pred CCCCCCCCCCC-c--cccCCCCC-C---CChhHHH---HCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCC
Q 011267 104 LDKKPARLPGF-H--TCVGSGGE-R---QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 104 ~~~~~~~~~~~-~--~~~~~~~~-~---~~~~~~~---~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG 171 (489)
........... . ...+.... . .+.+.+. ..+++++.+++|+.++.+.. ++++++|.++.+|.||-|.|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 00000000000 0 00000000 0 0111111 35789999999999875543 56778998999999999999
Q ss_pred CCCC
Q 011267 172 CTAS 175 (489)
Q Consensus 172 ~~~~ 175 (489)
....
T Consensus 158 ~~S~ 161 (372)
T PRK05868 158 LHSN 161 (372)
T ss_pred CCch
Confidence 7654
No 200
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.23 E-value=5.5e-06 Score=83.39 Aligned_cols=99 Identities=16% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||+.|+.+|..|++.|. +|+++++.+...- ..+ + ..+ .....+.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~-~-----~~~-----------~~~l~~~ 192 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM-P-----PEV-----------SSRLQHR 192 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC-C-----HHH-----------HHHHHHH
Confidence 35689999999999999999999875 7999998764210 000 0 000 0123556
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.+++++.++++.+++.+.. .+.+.+|.++.+|.+|+|+|..|.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 7788999999999999987543 567788999999999999998875
No 201
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.22 E-value=2.4e-06 Score=87.34 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~ 309 (489)
...+...+.+.+++.|+++++ ++.++++..+ +++|.++... +|+ ++.|+.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~-~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRF-NTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEE-SEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeec-cceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456778888999999999999 9999999864 6788888876 454 5889999999998665
No 202
>PRK07045 putative monooxygenase; Reviewed
Probab=98.22 E-value=8.7e-06 Score=82.33 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CC-CCcc---------ccC----------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RP-ALTK---------GYL---------------- 101 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~~-~l~~---------~~~---------------- 101 (489)
+.++||+||||||||+++|..|++.|+ +|+|+|+.+..... +. .++. +++
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 79 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL 79 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEE
Confidence 456899999999999999999999987 69999988753110 00 0000 000
Q ss_pred CCCCCCCCCCCCCccccCCCCC-----CCChhHH----H-HCCcEEEeCCcEEEEeCCC-C---EEEeCCCeEEeeCcEE
Q 011267 102 FPLDKKPARLPGFHTCVGSGGE-----RQTPEWY----K-EKGIEMIYQDPVTSIDIEK-Q---TLITNSGKLLKYGSLI 167 (489)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~-~~~i~~~~~~~V~~id~~~-~---~v~~~~g~~i~yd~lv 167 (489)
+........+ .+......... ..+.+.+ . ..+++++.+++++.+.... . .+++.+|+++.+|.||
T Consensus 80 ~~~g~~~~~~-~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vI 158 (388)
T PRK07045 80 YHDKELIASL-DYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLV 158 (388)
T ss_pred ecCCcEEEEe-cCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEE
Confidence 0000000000 00000000000 0011211 1 2478999999999987542 2 4777888899999999
Q ss_pred ecCCCCC
Q 011267 168 VATGCTA 174 (489)
Q Consensus 168 lATG~~~ 174 (489)
-|.|...
T Consensus 159 gADG~~S 165 (388)
T PRK07045 159 GADGARS 165 (388)
T ss_pred ECCCCCh
Confidence 9999865
No 203
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=3.8e-06 Score=86.81 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=71.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||++|+.+|..|++.|. +|+|+++.+... + ..+. .+ .....+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll---~--------~~d~---e~-----------~~~l~~~L 221 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLL---P--------GEDE---DI-----------AHILREKL 221 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---c--------cccH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999875421 0 0000 00 12234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeC-CC--eEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~-~g--~~i~yd~lvlATG~~~~ 175 (489)
++.|++++++++|.+++.+...+.+. +| .++.+|.+++|||..|.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 78899999999999998766554442 34 36899999999998876
No 204
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.21 E-value=2.5e-05 Score=78.89 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCc-EEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGV-KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv-~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.|+ .+.. ++.+..+... . ....|.+.+|+ +.+|.||+|+|...+
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~-~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEG-GTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEc-cceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 34777788888999995 5555 8888888753 3 55678888886 999999999997654
No 205
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.20 E-value=6e-05 Score=77.81 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=33.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|||||+|||+||+.|++.|. +.+|+|+|+++..+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence 479999999999999999999873 34899999998764
No 206
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.20 E-value=4e-06 Score=85.00 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCcc---ccC-----CC----------------
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTK---GYL-----FP---------------- 103 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--~l~~---~~~-----~~---------------- 103 (489)
++.||+|||||++|+++|..|++.|+ +|+|+|+.+...-... .++. ..+ .+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 45799999999999999999999987 6999999865321000 0000 000 00
Q ss_pred --CCCCCCCCC--C-CccccCCCCC-CC---C----hhHHHHC-CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEE
Q 011267 104 --LDKKPARLP--G-FHTCVGSGGE-RQ---T----PEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (489)
Q Consensus 104 --~~~~~~~~~--~-~~~~~~~~~~-~~---~----~~~~~~~-~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lv 167 (489)
.......++ . +....+.... .. + .+.+.+. +++++.++++++++.+.. .+.+.+|.++.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI 159 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence 000000000 0 0000000000 00 0 1112233 488999999999986543 5566788889999999
Q ss_pred ecCCCCCC
Q 011267 168 VATGCTAS 175 (489)
Q Consensus 168 lATG~~~~ 175 (489)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99998654
No 207
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.20 E-value=1e-05 Score=78.13 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~aD~vi~a~G~~p~ 309 (489)
.+..++-+..++.||+++. +....++.-++++.|.+|.++| |-++.+..-|.|-|.+..
T Consensus 184 ~~v~wLg~kAEe~GvEiyP-g~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYP-GFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred HHHHHHHHHHHhhCceecc-ccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 4556777788899999999 9999999888899998888754 236788888999887764
No 208
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.20 E-value=5e-05 Score=78.16 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCCC-CCCchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAK-PTVSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~~-p~~~~~~~ 315 (489)
...+.+.+.+.+++.|+++++ ++.++++..++++++.+|+.. +++ .+.++.||+|+|.. .|.++++.
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~-~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~ 200 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRL-NSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK 200 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEe-CCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence 356777888889999999999 999999987656777776653 343 47899999999954 44444433
No 209
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.19 E-value=5.1e-06 Score=84.54 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=34.8
Q ss_pred CcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 134 GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++++.+.+|++++.+. ..+.+.+|+++.+|.||.|.|....
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 68999999999986543 3677788989999999999998653
No 210
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.19 E-value=7.1e-06 Score=86.57 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++.+||+|||||++|+++|..|++.|. +|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 567899999999999999999999987 7999999864
No 211
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.19 E-value=9.7e-06 Score=80.44 Aligned_cols=99 Identities=22% Similarity=0.428 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchhhhh----------CHHHHHHHHHHHHhcC-cEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~----------~~~~~~~l~~~l~~~G-v~~~~~~~~v 273 (489)
.+++||+|||+.|+.+|..|.+.- .++++|++.+..+-..+ ..++...+.+.+++.+ |+++. .+|
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~--~~V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ--GEV 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE--EEE
Confidence 578999999999999999999874 88999999875432111 2344456778888666 99987 789
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++|+.+ .+ .|.++++..+++|.+|+++|..+++.
T Consensus 81 ~~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 81 TDIDRD--AK--KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEEccc--CC--EEEeCCCccccccEEEEecCCcCCcC
Confidence 999743 32 57888877899999999999998753
No 212
>PRK11445 putative oxidoreductase; Provisional
Probab=98.18 E-value=8.8e-06 Score=81.04 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=68.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC---Cccc---cC-----CCCCCCCC-----CC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA---LTKG---YL-----FPLDKKPA-----RL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~---~y~~~~---l~~~---~~-----~~~~~~~~-----~~ 111 (489)
++||+||||||||+++|..|++. + +|+|+|+.+.. ++..+- ++.. .+ ........ ..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~ 76 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV 76 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee
Confidence 47999999999999999999987 6 79999987643 222110 1100 00 00000000 00
Q ss_pred C--CCcc----ccCCCC----CCCChhHH---HHCCcEEEeCCcEEEEeCCCC--EEEe-CCCe--EEeeCcEEecCCCC
Q 011267 112 P--GFHT----CVGSGG----ERQTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLIT-NSGK--LLKYGSLIVATGCT 173 (489)
Q Consensus 112 ~--~~~~----~~~~~~----~~~~~~~~---~~~~i~~~~~~~V~~id~~~~--~v~~-~~g~--~i~yd~lvlATG~~ 173 (489)
. .+.. ..+... ...+..++ ...+++++.++.+..+..+.. .+.+ .+|. ++.+|.+|.|+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 77 KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0 0000 000000 00111222 235789999988988875443 3443 4564 68999999999986
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 157 S~ 158 (351)
T PRK11445 157 SM 158 (351)
T ss_pred cH
Confidence 53
No 213
>PRK07236 hypothetical protein; Provisional
Probab=98.18 E-value=1.1e-05 Score=81.55 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----hhCHHHHHHHHH------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYEQ------------------------ 257 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----~~~~~~~~~l~~------------------------ 257 (489)
..+|+|||||+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 578999999999999999999999999999988643221 012222222211
Q ss_pred -------------------HHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 258 -------------------LYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 258 -------------------~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.|.+ .+++++. +++|++++.++ +.+ .+.+++|+++.||+||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHL-GETLVGFEQDG-DRV-TARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEc-CCEEEEEEecC-CeE-EEEECCCCEEEeCEEEECCCCCchH
Confidence 1111 1356888 99999998543 333 5888999999999999999986643
No 214
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.18 E-value=6.8e-06 Score=82.23 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=65.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC----------CCCCCCCCccccC---
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCVG--- 119 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~--- 119 (489)
||+|||||+||+++|..|++. .++.+|+|+|+.+..+-+++. .++..... ....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~-~~g~~V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA-RPDFRIRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcchh
Confidence 799999999999999999987 123479999998743221110 01100000 0001111000000
Q ss_pred -----CCCCCCChhH----HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCC
Q 011267 120 -----SGGERQTPEW----YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 -----~~~~~~~~~~----~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+......++ .++.+..+..+++|..++.+ .+++.+|.++.++.||-|.|..+
T Consensus 77 ~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 77 RKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0000011122 12223346667889988654 36678899999999999999765
No 215
>PRK14694 putative mercuric reductase; Provisional
Probab=98.17 E-value=7.1e-06 Score=85.02 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=70.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||+|+.|+.+|..|++.|. +|++++++..++. . +. .+ .....+.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~~---~~-----------~~~l~~~l 228 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------DP---AV-----------GEAIEAAF 228 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 7999986432211 0 00 00 02245667
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++++..++.+... +.+.+ .++.+|.+++|+|..|..
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 7889999999999999876553 33334 469999999999998863
No 216
>PRK06126 hypothetical protein; Provisional
Probab=98.17 E-value=7e-06 Score=86.87 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+..+||+|||||++|+++|..|+++|+ +|+|+|+.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 3456899999999999999999999987 6999998864
No 217
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.17 E-value=1.2e-05 Score=81.55 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=34.5
Q ss_pred CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+++++.+++|+++..+.. .+++.+|.++.+|.||.|.|....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 4789998999999875443 566778888999999999998653
No 218
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.17 E-value=4.6e-06 Score=86.36 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=72.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+++++.+... |.+ +. .+ .....+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l 223 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------DK---EI-----------SKLAERAL 223 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999876421 100 00 00 02235567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCC---eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG---KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g---~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.+... +.+.++ +++++|.+|+|+|..|..
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 7889999999999999875443 444555 679999999999998763
No 219
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.17 E-value=1.8e-05 Score=83.46 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
+..+...+....+++|+++++ +++|+.+... ++++.+|++. ++ .++.||.||.|+|.... .+++..+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~-~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~-~l~~~~g 219 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILT-YHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ-HIAEYAD 219 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-ccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH-HHHHhcC
Confidence 345666666777889999999 9999999854 4566666653 23 37999999999998764 4444444
No 220
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.17 E-value=2.7e-05 Score=80.72 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~li~~~~~~~ 90 (489)
++||+|||||+|||+||+.|.++ |+ +|+|+|+++..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence 46899999999999999999998 65 799999998764
No 221
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.16 E-value=1.1e-05 Score=88.77 Aligned_cols=101 Identities=19% Similarity=0.437 Sum_probs=75.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCcch------hhhhC----HHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~l------~~~~~----~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +..+. .++.....+.+++.||+++. ++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~-g~~V 82 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLV-GERA 82 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEc-CCEE
Confidence 5899999999999999999765 46899998887642 11111 12222334567889999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
..+... .+ .|.+.+|+++.+|.+|+|||..|..+.+
T Consensus 83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCCC
Confidence 999743 22 4677888899999999999999875433
No 222
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.16 E-value=3.5e-06 Score=87.79 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.++||||||||+||+.||..+++.|. +|.|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 356999999999999999999999987 699999874
No 223
>PRK07588 hypothetical protein; Provisional
Probab=98.16 E-value=1.3e-05 Score=81.19 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=70.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-CCCc-c--------cc----C-----------C-CC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-PALT-K--------GY----L-----------F-PL 104 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~-~~l~-~--------~~----~-----------~-~~ 104 (489)
.||+|||||++|+++|..|++.|+ +|+|+|+.+...-. + ..+. . ++ . . ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 379999999999999999999987 69999987643100 0 0000 0 00 0 0 00
Q ss_pred CCCCCCCC--CCccccCCCCCCC----ChhHH---HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCC
Q 011267 105 DKKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 105 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~ 173 (489)
......++ .+....+...... +...+ ...+++++.+++|++++.+.. ++.+++|+++.+|.||-|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00000000 0000000000000 01111 124689999999999986554 4667889889999999999976
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 54
No 224
>PRK06753 hypothetical protein; Provisional
Probab=98.16 E-value=1.1e-05 Score=81.10 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=68.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--Ccc---------ccC----------------CCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--LTK---------GYL----------------FPLD 105 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~--l~~---------~~~----------------~~~~ 105 (489)
||+|||||+||+++|..|++.|+ +|+|+|+.+........ +.. +++ .+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 79999999999999999999987 69999998753211000 000 000 0000
Q ss_pred CCCCCCCCCccccCCCCC----CCChhHHHH--CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 106 KKPARLPGFHTCVGSGGE----RQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.....+ ....+.... ..+.+.+.+ .+.+++.+++|++++.+.. ++++.+|.++.+|.||-|.|...
T Consensus 79 ~~~~~~---~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 79 TLLNKV---KLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CEEeec---ccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 000000 000000000 001122222 2456888999999976544 56778898899999999999764
No 225
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.16 E-value=8e-06 Score=83.36 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||+|||||+||+++|..|++.|+ +|+|+|+.+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence 46899999999999999999999987 79999998753
No 226
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.15 E-value=1.2e-05 Score=81.24 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCcc---------cc----------------CC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---------GY----------------LF 102 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~~---------~~----------------~~ 102 (489)
.+||+|||||++|+++|..|++.|. +|+|||+.+....... .++. +. +.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 5799999999999999999999997 7999999821111100 0000 00 00
Q ss_pred CCCC--CCCCCCCCc-----cccC-CCCCCCChhHHHHC-CcEEEeCCcEEEEeCCCC--EEEeC-CCeEEeeCcEEecC
Q 011267 103 PLDK--KPARLPGFH-----TCVG-SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVAT 170 (489)
Q Consensus 103 ~~~~--~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-~i~~~~~~~V~~id~~~~--~v~~~-~g~~i~yd~lvlAT 170 (489)
.... ...+..... .... ......+.+...+. +++++.+++|+.++.+.. ++++. +|+++.+|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 0000 000000000 0000 00000001222233 489999999999987653 57777 99999999999999
Q ss_pred CCCC
Q 011267 171 GCTA 174 (489)
Q Consensus 171 G~~~ 174 (489)
|...
T Consensus 159 G~~S 162 (387)
T COG0654 159 GANS 162 (387)
T ss_pred CCch
Confidence 9754
No 227
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=7.5e-06 Score=84.97 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=71.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+|+|||||++|+.+|..|++.|. +|+||++.+... |.. + ..+ .....+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~--------~---~~~-----------~~~l~~~l 231 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE--------D---AEL-----------SKEVARLL 231 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999875 799999876420 000 0 000 01234567
Q ss_pred HHCCcEEEeCCcEEEEeC--CCCE--EEeCCC--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~--~~~~--v~~~~g--~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|..++. +... +.+.+| .+++||.+++|+|..|..
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 888999999999999974 3332 233456 368999999999998863
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.14 E-value=9.4e-06 Score=83.34 Aligned_cols=95 Identities=14% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ + . .+ .....+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~------d--~---~~-----------~~~l~~~l 199 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLM------D--A---DM-----------NQPILDEL 199 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhc------C--H---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999875421 100 0 0 00 02235567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.+++|.+++. ..+.+.+|+++.+|.+++|+|.+|.
T Consensus 200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence 888999999999999974 4677788888999999999998875
No 229
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.14 E-value=6e-05 Score=80.29 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
..+...+.+.+++.||+++. ++.++++..++++++.+|.. .+|+ .+.|+.||+|||--.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~-~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFI-EYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEE-eEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 34555666777778999999 99999988654578888764 3564 688999999999643
No 230
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.13 E-value=2.8e-05 Score=75.20 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=73.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh---------------------------------------h----
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R---- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------------------------------------~---- 245 (489)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998743210 0
Q ss_pred ------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEccCCCC
Q 011267 246 ------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~aD~vi~a~G~~p 308 (489)
.....+.+.+.+.+++.|++++. +++++++...++ .+ .+.+.+ +.++.+|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~-~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRL-GTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEe-CcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 01124556777888889999999 999999875443 33 344443 45799999999999865
No 231
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.13 E-value=9e-06 Score=83.74 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+.+|..|++.|. +|+++++.+.... .+ + ..+ .....+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------d---~~~-----------~~~l~~~l 217 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR---GF--------D---DDM-----------RALLARNM 217 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc---cc--------C---HHH-----------HHHHHHHH
Confidence 5689999999999999999999875 7999998654210 00 0 000 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCC--CCEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~--~~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.. ...+.+.+|+++.+|.+++|+|..|..
T Consensus 218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 7889999999999999753 335666788889999999999988753
No 232
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.12 E-value=3.7e-05 Score=79.73 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCC---CCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~li~~~~~~~ 90 (489)
+++|+|||||+|||+||+.|.+.+. .+.+|+|+|+++..+
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 3579999999999999999998742 134899999998764
No 233
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.12 E-value=1.4e-06 Score=89.14 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=29.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----CCcc---------c----cCCCCCC---CC-CC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-----ALTK---------G----YLFPLDK---KP-AR 110 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-----~l~~---------~----~~~~~~~---~~-~~ 110 (489)
||||||||+||++||..+++.|. +|+|||+.+....... .... + +...... .. ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 89999999999999999999987 7999999987542110 0000 0 0000000 00 00
Q ss_pred CCCC---ccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC---EEEeCC---CeEEeeCcEEecCCC
Q 011267 111 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---GKLLKYGSLIVATGC 172 (489)
Q Consensus 111 ~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~---~v~~~~---g~~i~yd~lvlATG~ 172 (489)
..+. ...........+.+++.+.|+++++++.|..+..++. .|.+.+ ..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 0011111123345666778999999999999887763 334433 457899999999994
No 234
>PRK06116 glutathione reductase; Validated
Probab=98.12 E-value=9.9e-06 Score=83.60 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+... +.. +. .+ .....+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~~---~~-----------~~~l~~~L 218 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------DP---DI-----------RETLVEEM 218 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------CH---HH-----------HHHHHHHH
Confidence 5789999999999999999999875 799999875421 000 00 00 12235667
Q ss_pred HHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++.+. ..+.+.+|+++.+|.+++|+|..|..
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 88999999999999997542 35677788889999999999988763
No 235
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.12 E-value=7.8e-06 Score=82.47 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=70.0
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCcc---cc-----CCCCC-C-CCCCCCCCc
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GY-----LFPLD-K-KPARLPGFH 115 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~------~-~~l~~---~~-----~~~~~-~-~~~~~~~~~ 115 (489)
||+|||||+||+++|..|++.|+ +|+|+|+.+..... + -.++. .. +.+.- . ......+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 79999999999999999999987 79999998753111 0 00100 00 00000 0 000000000
Q ss_pred cccC---------------CC--C---C----CCChhHHHHCC-cEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEe
Q 011267 116 TCVG---------------SG--G---E----RQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (489)
Q Consensus 116 ~~~~---------------~~--~---~----~~~~~~~~~~~-i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvl 168 (489)
.... .. . . ..+.+.+.+.+ ++++.+++|+.++.... .+.+.+|.++.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 0000 00 0 0 00011223445 89999999999976554 45667888899999999
Q ss_pred cCCCCCC
Q 011267 169 ATGCTAS 175 (489)
Q Consensus 169 ATG~~~~ 175 (489)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9997643
No 236
>PRK06185 hypothetical protein; Provisional
Probab=98.11 E-value=1.5e-05 Score=81.08 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+.+||+|||||++|+++|..|++.|. +|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 457899999999999999999999887 7999998764
No 237
>PRK07846 mycothione reductase; Reviewed
Probab=98.11 E-value=1e-05 Score=83.30 Aligned_cols=96 Identities=26% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+ +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d~---~~-----------~~~l~~-l 216 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------DD---DI-----------SERFTE-L 216 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------CH---HH-----------HHHHHH-H
Confidence 5789999999999999999999875 799999876421 000 00 00 001112 2
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+.++++++++++.+++.+.. .+.+.+|+++++|.+++|+|..|.
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 346799999999999986543 466678888999999999998876
No 238
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.10 E-value=1.4e-05 Score=80.65 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=69.4
Q ss_pred cEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCccc---c-----CCCCC-CCCCCCCCCcc
Q 011267 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTKG---Y-----LFPLD-KKPARLPGFHT 116 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~li~~~~~~~y~-----~-~~l~~~---~-----~~~~~-~~~~~~~~~~~ 116 (489)
||+|||||+||+++|..|+++| + +|+|+|+.+..... + ..++.. . +...- ...........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999998 7 79999998653221 0 000000 0 00000 00000000000
Q ss_pred ----------cc----CCC---C---CCCChh----HHHH-CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEec
Q 011267 117 ----------CV----GSG---G---ERQTPE----WYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (489)
Q Consensus 117 ----------~~----~~~---~---~~~~~~----~~~~-~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlA 169 (489)
.. +.. . ...+.+ .+.+ .+++++.+++|+++..+.. ++++.+|.++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 00 000 0 000111 1233 3899999999999865443 567778888999999999
Q ss_pred CCCCC
Q 011267 170 TGCTA 174 (489)
Q Consensus 170 TG~~~ 174 (489)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99764
No 239
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.09 E-value=1.1e-05 Score=83.62 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=73.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+.
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~ 225 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SFL--------DD---EI-----------SDALSYH 225 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---CcC--------CH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999875421 000 00 00 1223456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.+++++.+++|+.++.... .+.+.+|.++.+|.+++|+|.+|..
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 7788999999999999875433 4556778889999999999988763
No 240
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.09 E-value=2e-05 Score=86.68 Aligned_cols=91 Identities=27% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||||+.|+.+|..|++.|++|+++++.+.+.. . .++.+......+.+++.||++++ ++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~-gt~V-di~ 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF-GCSP-DLT 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe-Ccee-EEE
Confidence 467999999999999999999999999999998764321 1 12344555556778889999999 8776 222
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+++.+...+|.||+|||..+.
T Consensus 616 -----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 -----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhhheeccCCEEEECcCCCCC
Confidence 223334568999999999854
No 241
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.08 E-value=2.4e-05 Score=81.01 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC--CC--cEEEEEeCCC---cEEEcCEEEEccCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~--~~--~v~~v~~~~g---~~i~aD~vi~a~G~~ 307 (489)
...+.+.+.+.+++.|.++++ ++.|++|..++ ++ +++.|.+.+| +++++|.||+|+...
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~-~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHL-RHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEEC-CCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 334556677888899999999 99999998643 23 3666777654 569999999999853
No 242
>PRK07121 hypothetical protein; Validated
Probab=98.08 E-value=0.00011 Score=76.79 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~a-D~vi~a~G~~p 308 (489)
...+...+.+.+++.|+++++ ++.++++..++++++.+|...+ ++ .+.+ +.||+|+|.-.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~-~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRY-DTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEe-CCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 345677788888999999999 9999999865567887777643 32 5788 99999999644
No 243
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.08 E-value=0.00013 Score=77.98 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+..+...+.+..++.||+++. ++.++++..++++++.+|.. .+|+ .+.|+.||+|||--
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFI-EYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-ceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 456677777878889999999 99999987545678887764 3564 57899999999854
No 244
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.08 E-value=1.1e-05 Score=80.46 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=69.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh--------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~--------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
..+++++|||+|+.|+++|..|++.|.+|+++++.+.+... .++.+......+.+.+.|++++. ++.+..+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~v~~~ 94 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHT-RTKVCCG 94 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEec-CcEEeec
Confidence 45789999999999999999999999999999988765321 12223333444556677999999 8887655
Q ss_pred Ee---CCCCcEE--EEEeCCCcEEEcCEEEEccCCC-CC
Q 011267 277 EA---GSDGRVA--AVKLEDGSTIDADTIVIGIGAK-PT 309 (489)
Q Consensus 277 ~~---~~~~~v~--~v~~~~g~~i~aD~vi~a~G~~-p~ 309 (489)
.. ..++... .+..+ +..+.+|.||+|+|.. |.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC
Confidence 32 1111110 01111 2247899999999984 54
No 245
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.08 E-value=1.5e-05 Score=84.32 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.++||+||||||+|+++|..|++.|. +|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 356899999999999999999999987 6999999874
No 246
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.08 E-value=3.8e-06 Score=82.89 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC 172 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~ 172 (489)
.+++++. .+|+++..++. -|.+.+|..+.+|.+|+|||.
T Consensus 109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 5899875 68999987665 467889999999999999997
No 247
>PLN02487 zeta-carotene desaturase
Probab=98.07 E-value=3.5e-05 Score=80.82 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=47.7
Q ss_pred hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC--CC--cEEEEEe---CCCcEEEcCEEEEccCCC
Q 011267 247 FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 247 ~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~--~~--~v~~v~~---~~g~~i~aD~vi~a~G~~ 307 (489)
+...+.+.+.+.++++|.++++ ++.|++|..+. ++ ++.++.+ .+++++.+|.||++++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l-~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHL-RWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEe-CCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 4445778888999999999999 99999998652 23 3677887 344579999999999864
No 248
>PRK07045 putative monooxygenase; Reviewed
Probab=98.07 E-value=5.3e-05 Score=76.59 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=76.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------h----------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------Q---------------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~---------------------------------- 244 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+. +
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 479999999999999999999999999998764210 0
Q ss_pred --h-------hhC-------HHHHHHHHHHHH-hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 245 --R-------LFT-------PSLAQRYEQLYQ-QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 245 --~-------~~~-------~~~~~~l~~~l~-~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
. ..+ ..+.+.+.+.+. ..|+++++ +++++.++..+++.+..|++++|+++.+|+||-|.|..
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~-~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRF-ETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEe-CCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 0 000 122333444443 35799999 99999998766665567888999999999999999987
Q ss_pred CC
Q 011267 308 PT 309 (489)
Q Consensus 308 p~ 309 (489)
..
T Consensus 165 S~ 166 (388)
T PRK07045 165 SM 166 (388)
T ss_pred hH
Confidence 64
No 249
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=0.00015 Score=77.22 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+.+++.||+++. ++.++++..+++ +++.++.. .+|+ .+.|+.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~-~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFN-EFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEe-CCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 356677788888889999999 999999875442 67777765 3554 578999999999754
No 250
>PLN02463 lycopene beta cyclase
Probab=98.07 E-value=4.4e-05 Score=78.06 Aligned_cols=98 Identities=26% Similarity=0.320 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-hhh----------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---------------------------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-~~~---------------------------------------- 246 (489)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... ++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999998764211 000
Q ss_pred ---hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 247 ---FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 247 ---~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
....+.+.+.+.+.+.|++++. .+|++++..++ . ..|.+++|+++.||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~--~~V~~I~~~~~-~-~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQ--AKVKKVVHEES-K-SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEe--eEEEEEEEcCC-e-EEEEECCCCEEEcCEEEECcCCCcC
Confidence 0112334555666778999865 68999985433 3 3688899989999999999998764
No 251
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.06 E-value=2.2e-05 Score=79.85 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
.-+.+++|||||+-|+..|..+++.|- +||||++.+.. +...++.. .....+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~ 222 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK 222 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence 446789999999999999999999976 79999988753 11111111 122455
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCe--EEeeCcEEecCCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS 175 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~--~i~yd~lvlATG~~~~ 175 (489)
.+++.++.++.++++..+..... .+.+++|. ++.+|++++|+|-.|+
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence 66777899999999999876554 56677776 6889999999998776
No 252
>PRK06370 mercuric reductase; Validated
Probab=98.06 E-value=1.5e-05 Score=82.56 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+...- .. +. .+ .....+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------~~---~~-----------~~~l~~~l 222 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLP---RE--------DE---DV-----------AAAVREIL 222 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCc---cc--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999875 7999998764210 00 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEe---CCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~---~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++++++|.+++.+.. .+.+ .++.++.+|.+|+|+|..|..
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 788999999999999986543 3333 234579999999999998863
No 253
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=1.5e-05 Score=82.61 Aligned_cols=98 Identities=22% Similarity=0.311 Sum_probs=71.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|++..+... |.. +. .+ .....+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 223 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------DA---EV-----------SKEIAKQY 223 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799998754320 000 00 00 12235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeC--CC--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~--~g--~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++++++|.+++.+... +.+. +| .++++|.+++|+|..|..
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 8899999999999999865543 3333 56 469999999999988763
No 254
>PRK06834 hypothetical protein; Provisional
Probab=98.04 E-value=5.4e-05 Score=78.65 Aligned_cols=108 Identities=24% Similarity=0.374 Sum_probs=79.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---hh--------------------h------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QR--------------------L------------------ 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---~~--------------------~------------------ 246 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ .
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999763210 00 0
Q ss_pred ---h-----------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch
Q 011267 247 ---F-----------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312 (489)
Q Consensus 247 ---~-----------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~ 312 (489)
+ -..+.+.+.+.+++.|+++++ ++++++++.++++ + .+++.+|+++.+|.||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~-~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v-- 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYR-GREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV-- 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc--
Confidence 0 012334455667778999999 9999999865443 3 4677788889999999999998753
Q ss_pred hhhcCCee
Q 011267 313 FERVGLNS 320 (489)
Q Consensus 313 ~~~~gl~~ 320 (489)
-+.+|+..
T Consensus 159 R~~lgi~~ 166 (488)
T PRK06834 159 RKAAGIDF 166 (488)
T ss_pred HhhcCCCC
Confidence 34445443
No 255
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.04 E-value=1.3e-05 Score=82.39 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.6
Q ss_pred CcEEEeCCcEEEEeC---------CCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 134 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 134 ~i~~~~~~~V~~id~---------~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++++.+++|++++. +.-++++.+|+++.+|.||-|-|....
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 489999999999863 223677889999999999999998754
No 256
>PLN02661 Putative thiazole synthesis
Probab=98.04 E-value=1.4e-05 Score=77.66 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||+|||||+||++||+.|++.. +.+|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~--g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNP--NVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcC--CCeEEEEecCccc
Confidence 3679999999999999999999752 3379999997654
No 257
>PRK06996 hypothetical protein; Provisional
Probab=98.03 E-value=1.4e-05 Score=81.01 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA 87 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~ 87 (489)
|..+.+||+||||||+|+++|..|++.|. ...+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45567899999999999999999999873 124799999974
No 258
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.03 E-value=1.5e-05 Score=82.39 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|+.|+++|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||++++ ++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~-~~~v~~-- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRT-NTEVGR-- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEe-CCEECC--
Confidence 46899999999999999999999999999999887642 11 13557777778889999999999 876521
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.+.+++. .+.+|.||+|+|..
T Consensus 216 --------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 --------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred --------ccCHHHH-HhhCCEEEEccCCC
Confidence 1223333 37899999999986
No 259
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.03 E-value=2e-05 Score=81.16 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+||++.+... +.+.. .+ .....+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d~-----------~~-----------~~~~~~~l 217 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFDS-----------MI-----------SETITEEY 217 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccCH-----------HH-----------HHHHHHHH
Confidence 5799999999999999999999875 799999875421 00000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC---CEEEeCCC-eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~---~~v~~~~g-~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++.+.+++.+. ..+.+.+| ..+.+|.+++|+|..|..
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 78899999999999997542 24666677 579999999999988763
No 260
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.02 E-value=1.5e-05 Score=82.56 Aligned_cols=98 Identities=19% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||+|+.|+.+|..|++.|. +|+|+++.+... +.. +. .+ .....+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 217 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------EP---EI-----------SAAVEEAL 217 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999875 799999875421 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeC---CCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~---~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++++++|..++.+.. .+.+. ++.++++|.+++|+|..|..
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 788999999998999876543 34432 23679999999999998764
No 261
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.02 E-value=1.7e-05 Score=82.11 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=73.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||+|..|+.+|..|++.|. +|+++++.+... ...+.. + .....+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l-----------~~~d~~---~-----------~~~l~~~L 228 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVL-----------PGEDAD---A-----------AEVLEEVF 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCC-----------CCCCHH---H-----------HHHHHHHH
Confidence 4689999999999999999999875 799999765421 000000 0 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++++.+++.... .+.+.+|+++++|.+++|+|..|..
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 889999999999999964333 4566788889999999999998864
No 262
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.02 E-value=1.3e-05 Score=81.06 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=30.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+||+||||||||++||+.|++.|+ +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 699999999999999999999987 69999997
No 263
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.02 E-value=1.7e-05 Score=82.33 Aligned_cols=98 Identities=14% Similarity=0.286 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|+|||+|+.|+.+|..|++.|. +|+|+++.+.+. +.. +. .+ .....+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~l 234 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------DE---QV-----------AKEAAKAF 234 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999875 799999876421 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCC--C--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~--g--~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++.+.. .+.+.+ | .++++|.+++|+|..|..
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 788999999999999986544 334333 3 469999999999998763
No 264
>PRK10262 thioredoxin reductase; Provisional
Probab=98.02 E-value=8.6e-05 Score=72.98 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC---cc--------hh----hhhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQ----RLFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~---~~--------l~----~~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
..++++|||+|+.|+.+|..+.++|.++++++... .+ ++ ....+.+.+.+.+.....++++.. +
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF-D 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe-e
Confidence 46789999999999999999999999998886321 10 01 112345567777888888888877 4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.++.++.. ++. ..+..++ ..+.+|.||+|+|..|+.
T Consensus 84 -~v~~v~~~-~~~-~~v~~~~-~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 -HINKVDLQ-NRP-FRLTGDS-GEYTCDALIIATGASARY 119 (321)
T ss_pred -EEEEEEec-CCe-EEEEecC-CEEEECEEEECCCCCCCC
Confidence 57777643 222 2344333 378999999999999863
No 265
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00029 Score=68.13 Aligned_cols=97 Identities=23% Similarity=0.386 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCC---------------cchhhhhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN---------------HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~---------------~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
..++|||+|+.|+-+|-.+.+.+.+ +.+++... .+-.....+++.+.+.+..+..|+++.. .
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~--~ 81 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE--D 81 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE--E
Confidence 4689999999999999999999988 44544421 0111134578888888888889999887 7
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 272 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.|.+++..++ ...|.+++|+ +.|+.||+|+|..+.
T Consensus 82 ~v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 82 EVEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred EEEEEeecCc--eEEEEECCCe-EEEeEEEECcCCccc
Confidence 7888874332 5678888887 999999999999876
No 266
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.01 E-value=1.9e-05 Score=87.78 Aligned_cols=93 Identities=24% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+++.. ..++.++.+...+.+++.||+|++ |+.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~-n~~vG~-- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK-NFVVGK-- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE-eEEecc--
Confidence 478999999999999999999999999999998764321 113556777777888999999999 765421
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC-CC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~-p~ 309 (489)
.+.+++.....+|.|++|+|.. |.
T Consensus 382 --------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 --------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred --------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 2555665556799999999984 54
No 267
>PRK12839 hypothetical protein; Provisional
Probab=98.00 E-value=0.00013 Score=77.19 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc-EE-EcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS-TI-DADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~-~i-~aD~vi~a~G~~p~ 309 (489)
+..+...+.+..++.|++++. ++.++++..++++++.+|... +|+ ++ .++.||+|+|--..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~-~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRV-STSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEc-CCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 445666777888889999999 999999976556788888653 343 23 45899999986544
No 268
>PLN02576 protoporphyrinogen oxidase
Probab=98.00 E-value=9.7e-05 Score=77.30 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~~~ 90 (489)
..++||+|||||++||+||+.|.+. |. +|+|+|+++..+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence 4557899999999999999999998 76 799999998764
No 269
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=74.64 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEe-CCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~-~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
.......++..+++.|+.|+. +..|+.++- ++++..+.|.+.+|..+.++.+|+++|..-+ .+|.
T Consensus 152 a~kslk~~~~~~~~~G~i~~d-g~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~ 217 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRD-GEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP 217 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEec-CcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence 346667899999999999999 999888763 2345566899999999999999999998765 4444
No 270
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.99 E-value=6.9e-05 Score=75.90 Aligned_cols=109 Identities=27% Similarity=0.353 Sum_probs=80.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------hh-----------------h---------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------LQ-----------------R--------- 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------l~-----------------~--------- 245 (489)
...+|+|||||+.|+-+|..|++.|.+|+++++.+.. .+ .
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 3457999999999999999999999999999975310 00 0
Q ss_pred ----------hh---------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 246 ----------LF---------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 246 ----------~~---------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
.+ ...+.+.+.+.+++.|++++. +++|++++.++ +.+ .+++++|+++.+|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~v 161 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHC-PARVVALEQDA-DRV-RLRLDDGRRLEAALA 161 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEc-CCeEEEEEecC-CeE-EEEECCCCEEEeCEE
Confidence 00 022344566667778999999 99999998543 333 477888889999999
Q ss_pred EEccCCCCCCchhhhcCCe
Q 011267 301 VIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~ 319 (489)
|.|.|..+. +.+.+++.
T Consensus 162 V~AdG~~S~--vr~~~g~~ 178 (392)
T PRK08773 162 IAADGAAST--LRELAGLP 178 (392)
T ss_pred EEecCCCch--HHHhhcCC
Confidence 999999874 34444443
No 271
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.98 E-value=0.00011 Score=78.44 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC-CCcEEEEEe---CCCc--EEEcCEEEEccCCCCCCchhhhc
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
+..+...+.+..++.|++++. ++.|+++..++ ++++..|.. .+++ ++.+|.||+|+|.... .+++.+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~-~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~-~l~~~~ 303 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLN-YAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD-EVRKMA 303 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEe-ccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH-HHHHhc
Confidence 456777888889999999999 99999997654 466666665 2343 5899999999998764 444444
No 272
>PLN02507 glutathione reductase
Probab=97.98 E-value=2.2e-05 Score=81.80 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+|+++.+.. . +.+ +. .+ .....+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~-l--~~~--------d~---~~-----------~~~l~~~l 254 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELP-L--RGF--------DD---EM-----------RAVVARNL 254 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCc-C--ccc--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 79999976531 0 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.+. ..+.+.+|.++++|.+++|+|..|..
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 88899999999999997533 34666778889999999999988763
No 273
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.98 E-value=2e-05 Score=80.08 Aligned_cols=98 Identities=17% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+.+|..+++.|. +|++++..+...-. ++. ..+ .....+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~-------~~~------~~~-----------~~~~~~~l 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ-------LLD------PEV-----------AEELAELL 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh-------hhh------HHH-----------HHHHHHHH
Confidence 5899999999999999999999986 79999988753211 000 000 12346778
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE-----EEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~-----v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++++++++++..+..++...+. +...++..+++|.+++++|.+|.
T Consensus 189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 8899999999999999987643 57778888999999999999884
No 274
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.98 E-value=8.4e-05 Score=75.09 Aligned_cols=100 Identities=30% Similarity=0.377 Sum_probs=77.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccchh----------------h------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQ----------------R------------------------ 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~l~----------------~------------------------ 245 (489)
...|+|||||+.|+-+|..|++.|.+|+++++. ..+.+ +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 357999999999999999999999999999986 11100 0
Q ss_pred -------------------hhCHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEcc
Q 011267 246 -------------------LFTPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGI 304 (489)
Q Consensus 246 -------------------~~~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~aD~vi~a~ 304 (489)
.--..+.+.+.+.+.+.+ |+++. +++|+.++.++ +.+. ++++ +|++++||+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~-~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRF-GAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGAD 158 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEc-CceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECC
Confidence 001245566777777766 99999 99999998654 4554 7777 99999999999999
Q ss_pred CCCCC
Q 011267 305 GAKPT 309 (489)
Q Consensus 305 G~~p~ 309 (489)
|....
T Consensus 159 G~~S~ 163 (387)
T COG0654 159 GANSA 163 (387)
T ss_pred CCchH
Confidence 97553
No 275
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.97 E-value=2.5e-05 Score=79.12 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence 5799999999999999999999987 6999999874
No 276
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=0.00047 Score=73.44 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+...+.|++++. ++.++++..++++++.+|.. .+|+ .+.++.||+|+|...
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFV-EWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEe-CcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 445666777777888999999 99999988655677877765 2454 578999999999754
No 277
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.97 E-value=5.8e-05 Score=77.05 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.3
Q ss_pred CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+..++.+++|++++.... ++.+.+|.++.+|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 456778899999976443 567788889999999999997653
No 278
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.96 E-value=3.7e-05 Score=78.60 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEccCCCCCCchhhhc
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
+..+.........++|-+++. .++|+.+..+ ++ +.+|+..|.+ ++.++.||.|+|.... ++++..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~-~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d-~i~~~~ 232 (532)
T COG0578 163 DARLVAANARDAAEHGAEILT-YTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD-EILEMA 232 (532)
T ss_pred hHHHHHHHHHHHHhcccchhh-cceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH-HHHHhh
Confidence 445666666778889999999 9999999864 34 7788877643 5899999999998876 555544
No 279
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.96 E-value=2.9e-05 Score=80.92 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=71.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++... . +.+.. . + .....+.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l--~~~d~--------~---~-----------~~~l~~~l 232 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--L--RGFDR--------Q---C-----------SEKVVEYM 232 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--c--ccCCH--------H---H-----------HHHHHHHH
Confidence 4589999999999999999999875 7999975321 1 11100 0 0 02345677
Q ss_pred HHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.++.+..+.... ..+.+.+|+++.+|.+++|+|..|..
T Consensus 233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 88899999998888876533 34666788889999999999988763
No 280
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.96 E-value=3.4e-05 Score=78.14 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 589999999999999999999987 6999998753
No 281
>PRK08244 hypothetical protein; Provisional
Probab=97.95 E-value=9e-05 Score=77.46 Aligned_cols=101 Identities=23% Similarity=0.349 Sum_probs=73.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------h--------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R-------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------~-------------------- 245 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 4699999999999999999999999999997632100 0
Q ss_pred -------------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEccCCCCC
Q 011267 246 -------------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 -------------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~~p~ 309 (489)
.+ -..+.+.+.+.+++.|++++. ++++++++.++++....+...+| +++.+|.||.|.|....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~-~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFR-GAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEe-CCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 00 013445566677788999999 99999998654432222222355 47999999999999764
No 282
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.95 E-value=8.8e-05 Score=75.89 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=77.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------------hhhh--------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------QRLF-------------------------- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------------~~~~-------------------------- 247 (489)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. ...+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 579999999999999999999999999998763210 0000
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 248 ---------------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 248 ---------------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
-..+.+++.+..++.|++++. ++.|+++... ++.+..+. .+|+++.||.||.|+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~-~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLIT-GIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGV 162 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEEC-CCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCC
Confidence 011223466667778999999 9999998754 45554444 56678999999999998
Q ss_pred CCCCchhhhcCCe
Q 011267 307 KPTVSPFERVGLN 319 (489)
Q Consensus 307 ~p~~~~~~~~gl~ 319 (489)
.. .+.+.+|+.
T Consensus 163 ~s--~l~~~lgl~ 173 (428)
T PRK10157 163 NS--ILAEKLGMA 173 (428)
T ss_pred CH--HHHHHcCCC
Confidence 54 455565554
No 283
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.95 E-value=3.2e-05 Score=79.73 Aligned_cols=97 Identities=27% Similarity=0.372 Sum_probs=70.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|++|++.+... +.+.. .+ .....+ +
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d~-----------~~-----------~~~l~~-~ 219 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLDE-----------DI-----------SDRFTE-I 219 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccCH-----------HH-----------HHHHHH-H
Confidence 4689999999999999999999875 799999875421 00000 00 011122 2
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
.+.+++++++++|.+++.+.. .+.+.+|+++++|.+++|+|.+|..
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 346899999999999986543 4556678889999999999988763
No 284
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=0.00027 Score=75.10 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+..++.||+++. ++.++++..++++++.++.. .+|+ .+.++.||+|||--.
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFS-EWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEe-CcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 456666777777788999999 99999998655688888765 3554 578999999999643
No 285
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=0.0001 Score=77.93 Aligned_cols=97 Identities=29% Similarity=0.430 Sum_probs=74.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------hh---hhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------QR---LFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------~~---~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..|+|||||+.|+.+|..+++.|.+|+++++.. +. +. .....+.+.+.+.+++.|++++ ++.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~--~~~ 81 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL--QAE 81 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe--ccE
Confidence 579999999999999999999999999999753 11 00 0124667778888888999985 478
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
|+.+... +....+.+.++ .+.+|.+|+|+|.+|..
T Consensus 82 V~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 82 VLDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 8888743 23335666665 68999999999999864
No 286
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.94 E-value=0.0001 Score=74.96 Aligned_cols=106 Identities=26% Similarity=0.394 Sum_probs=78.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcc------------------hhh-----------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL------------------LQR----------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~------------------l~~----------------------- 245 (489)
+|+|||||+.|+-+|..|++.| .+|+++++.+.. +.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999875320 000
Q ss_pred ----------h---------------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 246 ----------L---------------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 246 ----------~---------------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
. ....+.+.+.+.+++.|++++. +++|++++.++ +.+ .+.+++|+++.||.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~v 159 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLRE-ATSVTDFETRD-EGV-TVTLSDGSVLEARLL 159 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEcC-CEE-EEEECCCCEEEeCEE
Confidence 0 0123445566777778999999 99999997543 333 577888889999999
Q ss_pred EEccCCCCCCchhhhcCCe
Q 011267 301 VIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~ 319 (489)
|.|.|..+. +.+.+++.
T Consensus 160 I~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 160 VAADGARSK--LRELAGIK 176 (403)
T ss_pred EEcCCCChH--HHHHcCCC
Confidence 999998764 44555554
No 287
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.94 E-value=2.3e-05 Score=79.22 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 4799999999999999999999988 6999999874
No 288
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.94 E-value=0.0001 Score=74.75 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=74.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------h------------h-----
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------L----- 246 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------~------------~----- 246 (489)
...+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 356899999999999999999999999999987643200 0 0
Q ss_pred --------h----------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 247 --------F----------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 --------~----------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
+ -..+.+.+.+.+.+. +++++. ++.++++..++ +.+ .+.+.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRT-STHVVGIEQDG-DGV-TVFDQQGNRWTGDALI 159 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEe-CCEEEEEecCC-Cce-EEEEcCCCEEecCEEE
Confidence 0 011223344445455 499999 99999998543 333 4778889899999999
Q ss_pred EccCCCCC
Q 011267 302 IGIGAKPT 309 (489)
Q Consensus 302 ~a~G~~p~ 309 (489)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99998764
No 289
>PRK13748 putative mercuric reductase; Provisional
Probab=97.94 E-value=3.1e-05 Score=82.30 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+||++...++. . +. .+ .....+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~~----~--------d~---~~-----------~~~l~~~l 320 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLFFR----E--------DP---AI-----------GEAVTAAF 320 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCccccc----c--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 7999987432110 0 00 00 02235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++++..++.+... +.+.++ ++.+|.+++|+|..|..
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 8899999999999998765443 334444 69999999999998864
No 290
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.94 E-value=5e-05 Score=70.96 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCcEEEEcCceEEEEEeCCCC---cEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec
Q 011267 252 AQRYEQLYQQNGVKFVKVGASIKNLEAGSDG---RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 321 (489)
Q Consensus 252 ~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~---~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~ 321 (489)
...+.+.++..|-++++ |-+++.+..+.++ ....|.-..++++.+..+|-|+|...+ ...+.+|++.+
T Consensus 199 ~ls~~edF~~~gg~i~~-n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d 269 (453)
T KOG2665|consen 199 TLSFGEDFDFMGGRIYT-NFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD 269 (453)
T ss_pred HHHHHHHHHHhcccccc-cceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence 33455558888999999 9999998755443 222233334678999999999999875 55666676654
No 291
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.93 E-value=0.00028 Score=75.47 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+..++.||+++. ++.+.++..++++++.++.. .+|+ .+.++.||+|||--.
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFV-EYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEE-eeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 445666777777788999999 99999987554678887765 3454 578999999999643
No 292
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.92 E-value=1.4e-05 Score=58.78 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.2
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
|||||++||++|..|++.|+ +|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCcccC
Confidence 89999999999999999976 899999988753
No 293
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.92 E-value=3.4e-05 Score=79.91 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+||++.+... +.+ +. .+ .....+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d~---~~-----------~~~l~~~ 224 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------DT---ET-----------AKTLQKA 224 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------CH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999765421 000 00 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeC---C--CeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~---~--g~~i~yd~lvlATG~~~~ 175 (489)
+++.+++++.+++|.++..+.. .+.+. + +.++++|.+++|+|..|.
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 7788999999999999976432 23332 2 357999999999998875
No 294
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=0.00032 Score=74.11 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+..+...+.+.+++.||++++ ++.++++..++++++.++.. .+|+ .+.|+.||+|||.-
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~-~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILE-EVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEe-CeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 456777788888889999999 99999987654444777653 4554 58999999999964
No 295
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.92 E-value=5.1e-05 Score=78.98 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. .....+.+.+++.||++++ +..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~-~~~~~----------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRL-GPGPT----------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEE-CCCcc-----------
Confidence 467999999999999999999999999999987642 2233455668889999998 65332
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchh---hhcCCee
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPF---ERVGLNS 320 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~---~~~gl~~ 320 (489)
....+|+||+++|..|+.+++ ++.|++.
T Consensus 75 -------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 -------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred -------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 124689999999999998874 3445544
No 296
>PRK07588 hypothetical protein; Provisional
Probab=97.92 E-value=0.0001 Score=74.54 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=71.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh---------h----------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R---------------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------~---------------------------------- 245 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 689999999999999999999999999987642200 0
Q ss_pred -hhC-----------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 246 -LFT-----------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 246 -~~~-----------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.++ ..+.+.+.+.+ ..|+++++ +++|++++..+ +.+ .|.+++|+++.+|+||-|.|..
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIF-DDSIATIDEHR-DGV-RVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEe-CCEEeEEEECC-CeE-EEEECCCCEEEeCEEEECCCCC
Confidence 000 01222222323 34799999 99999998653 344 4788999999999999999987
Q ss_pred CCC
Q 011267 308 PTV 310 (489)
Q Consensus 308 p~~ 310 (489)
..+
T Consensus 158 S~v 160 (391)
T PRK07588 158 SHV 160 (391)
T ss_pred ccc
Confidence 654
No 297
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.91 E-value=0.00012 Score=75.33 Aligned_cols=58 Identities=31% Similarity=0.584 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+.|.+..++.||+++. + .|+++..++++.+..|++++|+++.||.+|=|+|++..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~-g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIE-G-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEE-T--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEe-C-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4556677888889999998 6 57777777788899999999999999999999998653
No 298
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.91 E-value=2.6e-05 Score=78.38 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence 4689999999999999999999987 799999763
No 299
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.90 E-value=3.4e-05 Score=79.37 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=69.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
..++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.||+++. +..+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~-~~~v~~-- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRM-NFLVGK-- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEe-CCccCC--
Confidence 35789999999999999999999999999999876441 1 124566667777788899999999 874411
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCC-CCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~-~p~ 309 (489)
.+.+++. ...+|.||+|+|. .|.
T Consensus 209 --------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 --------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred --------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1333333 3468999999997 565
No 300
>PRK07190 hypothetical protein; Provisional
Probab=97.90 E-value=0.00021 Score=74.32 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=77.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------h-------------------------------hh-
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------Q-------------------------------RL- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~-------------------------------~~- 246 (489)
..|+|||+|++|+-+|..|++.|.+|.++++.+.+. + +.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 479999999999999999999999999998763210 0 00
Q ss_pred ---------hC------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 247 ---------FT------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 247 ---------~~------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
+. ..+.+.+.+.+++.|++++. +++|++++.++++ + .+.+.+|+++.|+.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~-~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKR-NTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEe-CCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCC
Confidence 00 01223455566778999999 9999999865544 3 35567788999999999999
Q ss_pred CCCCCchhhhcCCee
Q 011267 306 AKPTVSPFERVGLNS 320 (489)
Q Consensus 306 ~~p~~~~~~~~gl~~ 320 (489)
.... .-+.+|+..
T Consensus 163 ~~S~--vR~~lgi~f 175 (487)
T PRK07190 163 SRSF--VRNHFNVPF 175 (487)
T ss_pred CCHH--HHHHcCCCc
Confidence 8652 334455543
No 301
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.89 E-value=3.9e-05 Score=78.97 Aligned_cols=98 Identities=18% Similarity=0.341 Sum_probs=71.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||+|+.|+.+|..|++.|. +|+|+++.+... |.. +. .+ .....+.
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~ 208 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------DR---DI-----------ADNIATI 208 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------CH---HH-----------HHHHHHH
Confidence 34689999999999999999999875 799999865321 000 00 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.++++.+++.+... +.+.++ ++.+|.+++|+|..|..
T Consensus 209 l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 209 LRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 78889999999999999865543 334444 58999999999988763
No 302
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.89 E-value=4.5e-05 Score=79.18 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.... +.+.. .+ .....+.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d~-----------~~-----------~~~l~~~L 230 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DC-----------ANKVGEHM 230 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccCH-----------HH-----------HHHHHHHH
Confidence 4579999999999999999999875 79999753211 10100 00 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCC---eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g---~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+..+..+..... .+.+.++ .++++|.+++|+|..|..
T Consensus 231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 888999999988888765332 4555555 379999999999988763
No 303
>PRK14727 putative mercuric reductase; Provisional
Probab=97.88 E-value=4.6e-05 Score=79.18 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+..|..|++.|. +|+|+++....+. . +. .+ .....+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~~----~--------d~---~~-----------~~~l~~~L 238 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLFR----E--------DP---LL-----------GETLTACF 238 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCCc----c--------hH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 7999976421110 0 00 00 01235567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|..++.+.. .+.+.++ ++.+|.+++|+|..|..
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 788999999999998875443 3444444 58999999999998763
No 304
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.87 E-value=0.00015 Score=75.76 Aligned_cols=96 Identities=23% Similarity=0.381 Sum_probs=70.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-cc-----------------hh--h----------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HL-----------------LQ--R---------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~-~~-----------------l~--~---------------------- 245 (489)
-.|+|||||+.|+++|..+++.|.+|.++++.. .+ .. .
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 469999999999999999999999999998762 11 00 0
Q ss_pred -----------hhCH-HHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 246 -----------LFTP-SLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 246 -----------~~~~-~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.++. .+...+.+.+++. |++++. ..|+++.. +++++.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q--~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ--GEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE--eEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 0010 1223444555544 888865 67888764 456788899999999999999999994
No 305
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.87 E-value=5e-05 Score=78.77 Aligned_cols=102 Identities=18% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||||+.|+.+|..+........+|+|+++.+... +.+ +. .+ .....+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~~~--------d~---~~-----------~~~l~~~ 240 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---RGF--------DS---TL-----------RKELTKQ 240 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc---ccc--------CH---HH-----------HHHHHHH
Confidence 35789999999999999987765411123899999775421 000 00 00 0223456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.+++++.++.+.+++... ..+.+.+|.++++|.+++|+|..|..
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 788999999999999987532 35666778889999999999988753
No 306
>PRK05868 hypothetical protein; Validated
Probab=97.86 E-value=0.00017 Score=72.49 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 244 (489)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999997632100
Q ss_pred --hhhC-HHH------------HHHHHHHHH---hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 245 --RLFT-PSL------------AQRYEQLYQ---QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 245 --~~~~-~~~------------~~~l~~~l~---~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.... ... ...+.+.+. ..|+++++ +++|++++.+ ++.+ .+.+++|+++.+|+||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~-~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLF-DDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEe-CCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCC
Confidence 0000 000 112222222 36899999 9999999754 3333 588899999999999999998
Q ss_pred CCCC
Q 011267 307 KPTV 310 (489)
Q Consensus 307 ~p~~ 310 (489)
...+
T Consensus 159 ~S~v 162 (372)
T PRK05868 159 HSNV 162 (372)
T ss_pred CchH
Confidence 7653
No 307
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.85 E-value=3.9e-05 Score=79.31 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.|++++. ++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~-~~~v~~~- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL-NCEVGRD- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC-CCEeCCc-
Confidence 46789999999999999999999999999999887541 1 113556666677888999999999 8866321
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+++ ....+|.||+|+|..+.
T Consensus 218 ---------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 ---------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred ---------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999999874
No 308
>PLN02697 lycopene epsilon cyclase
Probab=97.85 E-value=0.00017 Score=75.06 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------------ 245 (489)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 46999999999999999999999999999864211000
Q ss_pred hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 246 LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
.....+.+.+.+.+.+.|+++ . ++.|+++...++ .+..+.+.+|+++.|+.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~-~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-L-SSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-E-eeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000123345556667789998 5 689999975433 33335667888999999999999876
No 309
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.85 E-value=0.00017 Score=73.45 Aligned_cols=99 Identities=19% Similarity=0.345 Sum_probs=74.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc------------------------chh------h-----h------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------LLQ------R-----L------ 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~------------------------~l~------~-----~------ 246 (489)
..|+|||||+.|+-+|..|.+.|.+|+++++.+. ++. . .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997641 000 0 0
Q ss_pred ------------h---------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCE
Q 011267 247 ------------F---------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299 (489)
Q Consensus 247 ------------~---------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~ 299 (489)
+ ...+.+.+.+.+++.|++++. ++++++++.++++ + .|.+.+|+++.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~ 159 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLA-NARLEQMRRSGDD-W-LLTLADGRQLRAPL 159 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEc-CCEEEEEEEcCCe-E-EEEECCCCEEEeCE
Confidence 0 001223444556677999999 9999999865443 3 47788898999999
Q ss_pred EEEccCCCCC
Q 011267 300 IVIGIGAKPT 309 (489)
Q Consensus 300 vi~a~G~~p~ 309 (489)
||.|.|....
T Consensus 160 vVgAdG~~S~ 169 (405)
T PRK05714 160 VVAADGANSA 169 (405)
T ss_pred EEEecCCCch
Confidence 9999998664
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=97.84 E-value=4.4e-05 Score=78.84 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=67.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCH-HHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTP-SLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~-~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
.+++++|||+|+.|+.+|..|+++|++|+++++.+.+. +. .++. .+.....+.+++.||++++ ++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~-~~~v~~- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIET-NVVVGK- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEc-CCEECC-
Confidence 46789999999999999999999999999999765431 11 0122 2556666788899999999 875521
Q ss_pred EeCCCCcEEEEEeCCC-cEEEcCEEEEccCC-CCC
Q 011267 277 EAGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT 309 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~-~p~ 309 (489)
.+.+++. +.+.+|.||+|+|. .|.
T Consensus 217 ---------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 ---------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred ---------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1223332 34579999999998 464
No 311
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.84 E-value=0.00021 Score=75.95 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEccCCCCC-Cchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKPT-VSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~a-D~vi~a~G~~p~-~~~~~~ 315 (489)
+..+...+.+.+++.|++++. ++.++++..+ ++++.+|...+ |+ ++.+ +.||+|+|.-.. .+++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~-~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILT-QTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEe-CCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 556777888889999999999 9999998743 67888877654 33 4776 689999987644 344444
No 312
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.83 E-value=6.8e-05 Score=76.16 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999999987 7999998765
No 313
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.83 E-value=0.00026 Score=74.72 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~a-D~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.||++++ ++.++++.. ++++|.+|... +|+ .+.+ ..||+|+|--.+
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~-~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWT-ETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEe-cCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 567778888888999999999 999999885 46788887553 343 3556 579999986544
No 314
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.83 E-value=1.7e-05 Score=70.48 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..-||+||||||+||+||++|++.|. +|+|+|+...+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~ 65 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSF 65 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCc---eEEEEEeeccc
Confidence 35699999999999999999999977 69999998654
No 315
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.82 E-value=1.5e-05 Score=71.28 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||+||||||||++||+.|++.|+ +|+++|++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCC
Confidence 46899999999999999999999987 69999997653
No 316
>PRK06184 hypothetical protein; Provisional
Probab=97.82 E-value=0.00025 Score=74.25 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------------------------h--
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------------~-- 245 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 4699999999999999999999999999997622100 0
Q ss_pred ---------------------hhC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCcEEEcCEE
Q 011267 246 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGSTIDADTI 300 (489)
Q Consensus 246 ---------------------~~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~aD~v 300 (489)
.++ ..+.+.+.+.+++.|+++++ ++++++++.++++ + .+.+ .+++++.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~-~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEF-GCELVGFEQDADG-V-TARVAGPAGEETVRARYL 160 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEe-CcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEE
Confidence 000 12334566777778999999 9999999865444 3 3444 55678999999
Q ss_pred EEccCCCC
Q 011267 301 VIGIGAKP 308 (489)
Q Consensus 301 i~a~G~~p 308 (489)
|.|.|...
T Consensus 161 VgADG~~S 168 (502)
T PRK06184 161 VGADGGRS 168 (502)
T ss_pred EECCCCch
Confidence 99999765
No 317
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.82 E-value=3e-05 Score=79.58 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=34.4
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+..+++||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 34567999999999999999999999987 6999998753
No 318
>PRK09126 hypothetical protein; Provisional
Probab=97.80 E-value=0.0002 Score=72.43 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=72.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh--------------------h--------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR--------------------L-------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~--------------------~-------------- 246 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+- .+ .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999764210 00 0
Q ss_pred ---------hC---------------HHHHHHHHHHH-HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 247 ---------FT---------------PSLAQRYEQLY-QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 ---------~~---------------~~~~~~l~~~l-~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
++ ..+.+.+.+.+ +..|++++. ++++++++..++ .+ .|.+++|+++.||.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~-~~~v~~~~~~~~-~~-~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLT-GTRVTAVRTDDD-GA-QVTLANGRRLTARLLV 160 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEc-CCeEEEEEEcCC-eE-EEEEcCCCEEEeCEEE
Confidence 00 00112222333 346899999 999999975433 33 5778889999999999
Q ss_pred EccCCCCCC
Q 011267 302 IGIGAKPTV 310 (489)
Q Consensus 302 ~a~G~~p~~ 310 (489)
.|.|..+..
T Consensus 161 ~AdG~~S~v 169 (392)
T PRK09126 161 AADSRFSAT 169 (392)
T ss_pred EeCCCCchh
Confidence 999987653
No 319
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.80 E-value=6.6e-05 Score=77.73 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=69.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... +.+ +. .+ .....+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~ 219 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------DP---EV-----------SKQAQKI 219 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------hH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 699999875421 000 00 00 0123455
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC-EEE--eCC--CeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ-TLI--TNS--GKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~-~v~--~~~--g~~i~yd~lvlATG~~~~~ 176 (489)
+++. +++++++++.+++.... .+. ..+ +.++++|.+++|+|..|..
T Consensus 220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 6777 99999999999976543 343 223 3579999999999988763
No 320
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.80 E-value=0.00021 Score=72.08 Aligned_cols=105 Identities=21% Similarity=0.319 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcchhh--------h---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------L--------------------------------- 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~l~~--------~--------------------------------- 246 (489)
.|+|||+|+.|+-+|..|++.| .+|+++++.+.+-.. .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3899999999999999999999 999999876321000 0
Q ss_pred -------h---------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 247 -------F---------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 247 -------~---------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
+ -..+.+.+.+.+.+ .|++++. +++|+++..++++ + .+.+++|+++.||.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYC-PARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEc-CCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEe
Confidence 0 01233444455555 4999999 9999999865443 3 477788889999999999
Q ss_pred cCCCCCCchhhhcCC
Q 011267 304 IGAKPTVSPFERVGL 318 (489)
Q Consensus 304 ~G~~p~~~~~~~~gl 318 (489)
.|.... +.+.+++
T Consensus 158 dG~~S~--vr~~l~~ 170 (382)
T TIGR01984 158 DGANSK--VRELLSI 170 (382)
T ss_pred cCCChH--HHHHcCC
Confidence 997653 3344443
No 321
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.79 E-value=0.00033 Score=73.13 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=72.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hhh-------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQR------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~~------------------------- 245 (489)
.|+|||+|+.|+++|..+++.|.+|.++++.... ..+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999999999999999864210 000
Q ss_pred ----------hhCH-HHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 246 ----------LFTP-SLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ----------~~~~-~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
++|+ .+...+.+.+++. |+.++. ..++++...+++.+.+|.+.+|..+.||.||+|+|...
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile--~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQ--GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEE--eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0011 1223455566666 788876 46777754446778899999999999999999999874
No 322
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.79 E-value=6.9e-05 Score=77.08 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEccCCcchh---------hhhCHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~l~---------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.+++|+|||+|+.|+.+|..|++ .|++|+++++.+.+.. ......+...+.+.++..||+++. |..+-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~-nv~vg 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFG-NVTLG 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEc-CEEEC
Confidence 46789999999999999999986 7999999999875531 111223445666778888999988 76552
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
. .+.+++.+ ..+|.||+|+|..+.
T Consensus 104 ~----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 R----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred c----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 1 23444432 468999999999763
No 323
>PTZ00058 glutathione reductase; Provisional
Probab=97.79 E-value=8.4e-05 Score=78.11 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d~---~i-----------~~~l~~~L 288 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------DE---TI-----------INELENDM 288 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------CH---HH-----------HHHHHHHH
Confidence 5789999999999999999999875 799999865321 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC---EEEeCC-CeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~---~v~~~~-g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.+..+.+++.+.. .+...+ ++++++|.+++|+|..|.
T Consensus 289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 788999999999999976432 233333 457999999999998775
No 324
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.78 E-value=0.00019 Score=71.28 Aligned_cols=100 Identities=29% Similarity=0.372 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-----------------------------------------hh---
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-----------------------------------------LQ--- 244 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-----------------------------------------l~--- 244 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+ ..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999987211 00
Q ss_pred -----------hh------------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CC--cEEEc
Q 011267 245 -----------RL------------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DG--STIDA 297 (489)
Q Consensus 245 -----------~~------------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~a 297 (489)
.. + -..+.+.+.+.+++.|++++. +++++.++.+.++....+... +| +++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~-~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~a 161 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRF-GTRVVSIEQDDDGVTVVVRDGEDGEEETIEA 161 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEE-SEEEEEEEEETTEEEEEEEETCTCEEEEEEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhhee-eeecccccccccccccccccccCCceeEEEE
Confidence 00 0 135667788888889999999 999999986654432223333 34 36999
Q ss_pred CEEEEccCCCCC
Q 011267 298 DTIVIGIGAKPT 309 (489)
Q Consensus 298 D~vi~a~G~~p~ 309 (489)
|+||-|-|....
T Consensus 162 dlvVgADG~~S~ 173 (356)
T PF01494_consen 162 DLVVGADGAHSK 173 (356)
T ss_dssp SEEEE-SGTT-H
T ss_pred eeeecccCcccc
Confidence 999999998764
No 325
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.77 E-value=0.00025 Score=71.46 Aligned_cols=98 Identities=28% Similarity=0.359 Sum_probs=73.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h--h---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--L--------------------------------- 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~--~--------------------------------- 246 (489)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999998742100 0 0
Q ss_pred --------h---------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 247 --------F---------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 247 --------~---------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
+ -..+.+.+.+.+++.| ++++. +++|++++..+ +.+ .+.+++|+++.+|.||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLC-PARVVELPRHS-DHV-ELTLDDGQQLRARLLVG 157 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEec-CCeEEEEEecC-Cee-EEEECCCCEEEeeEEEE
Confidence 0 0112334555566667 99999 99999998543 344 57888998999999999
Q ss_pred ccCCCCC
Q 011267 303 GIGAKPT 309 (489)
Q Consensus 303 a~G~~p~ 309 (489)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9998653
No 326
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.77 E-value=2.5e-05 Score=79.86 Aligned_cols=107 Identities=25% Similarity=0.342 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----------------------------h--------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------R-------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----------------------------~-------------- 245 (489)
.|+|||||..|+-+|..+++.|.+|.|+++.+.+.. +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 389999999999999999999999999998843200 0
Q ss_pred -----hhCH-HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEccCCCCCCchhhhc
Q 011267 246 -----LFTP-SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 246 -----~~~~-~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
.+++ .+...+.+++++.|+++++ ++.|.++.. +++++.+|.+.+ ..++.|+.+|-|||- -+++..+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~-~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~a 155 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLL-GTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALA 155 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccc---ccccccc
Confidence 1111 1223466677788999999 999999985 456788888875 467999999999993 2556666
Q ss_pred CCee
Q 011267 317 GLNS 320 (489)
Q Consensus 317 gl~~ 320 (489)
|++.
T Consensus 156 G~~~ 159 (428)
T PF12831_consen 156 GAPY 159 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 6654
No 327
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=0.00015 Score=77.66 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||+|.||++||.++++.|. +|+||++..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence 46799999999999999999999876 799999754
No 328
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.76 E-value=6.4e-05 Score=78.08 Aligned_cols=90 Identities=24% Similarity=0.288 Sum_probs=68.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|+.|+++|..|++.|.+|+++++.+++. + ..++..+.....+.+++.||++++ ++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~-~~~v~~~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT-NTEIGVD- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC-CCEeCCc-
Confidence 35799999999999999999999999999999887542 1 113556666666788899999999 8876311
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+. .++....+|.|++|+|..
T Consensus 220 ---------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 ---------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred ---------cC-HHHHHhhCCEEEEccCCC
Confidence 10 011235789999999997
No 329
>PRK06753 hypothetical protein; Provisional
Probab=97.76 E-value=0.00021 Score=71.86 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=69.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----hhCHHH---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPSL--------------------------------- 251 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----~~~~~~--------------------------------- 251 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987532100 000000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 252 ---------------AQRYEQLYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 252 ---------------~~~l~~~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
...+.+.|.+ .+.++++ ++++++++.+ ++.+ .|++++|+++.+|+||-|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~-~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFT-GKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEE-CCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence 0112222222 2457888 9999999854 3443 578889999999999999997654
No 330
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.76 E-value=0.00027 Score=72.14 Aligned_cols=101 Identities=25% Similarity=0.383 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----hh-------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----~~------------------------------------- 245 (489)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+- .+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4579999999999999999999999999998763210 00
Q ss_pred -----hh---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEE
Q 011267 246 -----LF---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLED-G--STIDADTIV 301 (489)
Q Consensus 246 -----~~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~aD~vi 301 (489)
.+ ...+.+.+.+.+.+. |+++++ ++++++++.++++ + .|.+.+ + .++.||+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~-~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLC-PAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEc-CCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEE
Confidence 00 012223344444443 799999 9999999754433 3 356653 2 369999999
Q ss_pred EccCCCCCC
Q 011267 302 IGIGAKPTV 310 (489)
Q Consensus 302 ~a~G~~p~~ 310 (489)
.|.|.....
T Consensus 175 gADG~~S~v 183 (415)
T PRK07364 175 AADGARSPI 183 (415)
T ss_pred EeCCCCchh
Confidence 999987643
No 331
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.75 E-value=7.1e-05 Score=74.18 Aligned_cols=99 Identities=21% Similarity=0.353 Sum_probs=78.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
...||++|+|..|+.+|..|+.... +||+|.+++.. ..+ ++.+ .+ .....++|
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~~------lf~~------~i-----------~~~~~~y~ 265 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LPR------LFGP------SI-----------GQFYEDYY 265 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hhh------hhhH------HH-----------HHHHHHHH
Confidence 6789999999999999999999854 89999998753 111 1111 00 13456788
Q ss_pred HHCCcEEEeCCcEEEEeCCC----CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~----~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.++++++++.+.+++... ..|.+.+|+++++|-|++.+|+.|..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 99999999999988887544 36788999999999999999999864
No 332
>PRK08013 oxidoreductase; Provisional
Probab=97.74 E-value=0.00028 Score=71.65 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------hh------h-------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------QR------L------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~~------~------------- 246 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+- .+ .
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 479999999999999999999999999999764210 00 0
Q ss_pred ----------h---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 247 ----------F---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 247 ----------~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
+ -..+.+.+.+.+.+. |+++++ ++++++++.++++ + .+.+.+|+++.+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~-~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lv 160 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLA-PAELQQVAWGENE-A-FLTLKDGSMLTARLV 160 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEc-CCeeEEEEecCCe-E-EEEEcCCCEEEeeEE
Confidence 0 001223334444443 799999 9999999755433 3 577889999999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|-|-|....
T Consensus 161 VgADG~~S~ 169 (400)
T PRK08013 161 VGADGANSW 169 (400)
T ss_pred EEeCCCCcH
Confidence 999998764
No 333
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.74 E-value=8.6e-05 Score=77.43 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+||+|||||+||+.+|..+++.|. +|+||++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---CEEEEecccc
Confidence 589999999999999999999876 6999998643
No 334
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.74 E-value=0.00031 Score=71.21 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=80.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------------hh------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------------~~------------------------ 245 (489)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+- +.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 468999999999999999999999999999863210 00
Q ss_pred -------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 246 -------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 246 -------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+ -..+-+++.+..++.|++++. ++++..+..++++.+. .+..++.++.++.||.|.|... .+.+.++
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~-~~~~~~~~~~~~~~~~-~~~~~~~e~~a~~vI~AdG~~s--~l~~~lg 159 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYP-GTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVNS--ALARKLG 159 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEe-ceEEEEEEEeCCcEEE-EEEcCCEEEEcCEEEECCCcch--HHHHHhC
Confidence 00 123445677888899999999 9999999876656554 3444447899999999999765 4455555
Q ss_pred Ce
Q 011267 318 LN 319 (489)
Q Consensus 318 l~ 319 (489)
+.
T Consensus 160 ~~ 161 (396)
T COG0644 160 LK 161 (396)
T ss_pred CC
Confidence 54
No 335
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.74 E-value=0.00032 Score=70.87 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------------h------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R------------------ 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------------------------~------------------ 245 (489)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 389999999999999999999999999997642110 0
Q ss_pred -hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 246 -LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 -~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
.-...+.+.+.+.+.+.|++++. ..++.+...+ +....|.+++|+++.|+.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~--~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLE--RKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEc--cEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00022335555666777998865 6788887542 333457788888999999999999876
No 336
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.73 E-value=0.00035 Score=70.72 Aligned_cols=100 Identities=22% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------h------hh------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------Q------RL------------ 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~------~~------------ 246 (489)
...|+|||||+.|+-+|..|++.|.+|+++++.+... . ..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3579999999999999999999999999998763100 0 00
Q ss_pred ----------h---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 247 ----------F---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 247 ----------~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
+ ...+.+.+.+.+++. |++++. +++++++...+++ ..|.+++|+++.+|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRC-PASLQALQRDDDG--WELTLADGEEIQAKLV 161 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEc-CCeeEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0 011223344445555 999999 9999999754333 3577788889999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (391)
T PRK08020 162 IGADGANSQ 170 (391)
T ss_pred EEeCCCCch
Confidence 999999774
No 337
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.73 E-value=0.00013 Score=80.77 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
+++|+|||||+.|+.+|..|++.|++|+++++.+.+.. . .++.+......+.+++.||++++ +... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~-g~~~-d--- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKY-GCSP-D--- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEE-eccc-c---
Confidence 46899999999999999999999999999998764311 1 12344555555677888999998 7421 0
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 279 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+++.+...+|.||+|+|..+.
T Consensus 612 --------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 --------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred --------eEhhhhhcccccEEEECCCCCCC
Confidence 12233334568999999999754
No 338
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.73 E-value=8.7e-05 Score=81.46 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=69.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. +. .++.++.+...+.+++.||+|++ ++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~-~~~v~~-- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFET-DVIVGK-- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEEC-CCEECC--
Confidence 35789999999999999999999999999999864321 10 13455666666778899999999 865411
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCC-CCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~-~p~ 309 (489)
.+.+++.....+|.||+|+|. .|.
T Consensus 507 --------~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 507 --------TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred --------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 233444445679999999998 465
No 339
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.72 E-value=0.00032 Score=70.83 Aligned_cols=100 Identities=24% Similarity=0.339 Sum_probs=71.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--c-------------chh-------------hh-------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--H-------------LLQ-------------RL------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~--~-------------~l~-------------~~------------- 246 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+ . +.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 469999999999999999999999999999653 0 000 00
Q ss_pred ---------hC---------------HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 247 ---------FT---------------PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 ---------~~---------------~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
++ ..+...+.+.+++ .|++++. ++++++++.++++ + .+++++|+++.||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~-~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMC-PEKLADLEFSAEG-N-RVTLESGAEIEAKWVI 160 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEEC-CCceeEEEEcCCe-E-EEEECCCCEEEeeEEE
Confidence 00 0001112222333 3799999 9999999865443 3 5888999999999999
Q ss_pred EccCCCCCC
Q 011267 302 IGIGAKPTV 310 (489)
Q Consensus 302 ~a~G~~p~~ 310 (489)
.|.|.....
T Consensus 161 gADG~~S~v 169 (384)
T PRK08849 161 GADGANSQV 169 (384)
T ss_pred EecCCCchh
Confidence 999997754
No 340
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.70 E-value=4.4e-05 Score=78.70 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=36.5
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++++|+|||||+|||+||++|.+.|+ +|+|+|.....+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG 51 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG 51 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence 35677899999999999999999999998 699999987764
No 341
>PRK07538 hypothetical protein; Provisional
Probab=97.70 E-value=0.00011 Score=74.85 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.||+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 479999999999999999999987 6999999764
No 342
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=0.0001 Score=76.49 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=68.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+||++.+... |.+ +. .+ .....+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~~~~~l 225 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------DK---DI-----------VKVFTKRI 225 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999876 799999876421 000 00 00 01223445
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCC--C--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~--g--~~i~yd~lvlATG~~~~~ 176 (489)
++. ++++.+++|..++.... .+.+.+ + .++++|.+++|+|..|..
T Consensus 226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 566 99999999998875433 344433 2 469999999999998763
No 343
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.70 E-value=0.00042 Score=72.45 Aligned_cols=136 Identities=21% Similarity=0.272 Sum_probs=81.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh------------------------------------hh----
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------RL---- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------~~---- 246 (489)
.|+|+|||+|.+|+-.|..|.+.|.+++++++.+.+.. ..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37899999999999999999999999999998743210 00
Q ss_pred -hCHHHHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCC---cEEEEEeCC-Cc--EEEcCEEEEccCCC--CCCchhhh
Q 011267 247 -FTPSLAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDG---RVAAVKLED-GS--TIDADTIVIGIGAK--PTVSPFER 315 (489)
Q Consensus 247 -~~~~~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~---~v~~v~~~~-g~--~i~aD~vi~a~G~~--p~~~~~~~ 315 (489)
-..++.++++...+..++ .+.+ |++|++++..++. ....|++.+ |+ +-.+|.||+|+|.- |+.+.-.-
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~f-nt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRF-NTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEET-SEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEE-ccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 014678888888888887 4677 9999999875442 223455544 42 34689999999974 54332001
Q ss_pred cCCeecCCcEEeCCCCCC----CCCCeEEecc
Q 011267 316 VGLNSSVGGIQVDGQFRT----RMPGIFAIGD 343 (489)
Q Consensus 316 ~gl~~~~g~i~vd~~~~t----~~~~Iya~GD 343 (489)
-|++.=.|.+.=-..++. ..++|-++|-
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~ 191 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGG 191 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESS
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeC
Confidence 233221233332223332 3466777774
No 344
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.69 E-value=0.00021 Score=72.67 Aligned_cols=92 Identities=12% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HhCCCcEEEEccCCcchh---------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAA-VGWKLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l-~~~g~~V~lv~~~~~~l~---------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
.+++|+|||+|+.|+.+|..| ++.|++|+++++.+.+.. +..-..+.+.+...+...+++++. |..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g-nv~VG~ 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFG-NVHVGV 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEe-eeEecC
Confidence 468999999999999999965 567999999999876522 101124455565666677888876 554421
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+..++=+ -.+|.||+|+|..+.
T Consensus 117 ----------Dvt~eeL~-~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ----------DLKMEELR-NHYNCVIFCCGASEV 139 (506)
T ss_pred ----------ccCHHHHH-hcCCEEEEEcCCCCC
Confidence 11122212 268999999998854
No 345
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00048 Score=61.46 Aligned_cols=138 Identities=23% Similarity=0.320 Sum_probs=89.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----------------------h--------------hhCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------R--------------LFTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----------------------~--------------~~~~ 249 (489)
...|+|+|+|++|+.+|+.|++.|.+|.+++++-.+-. . .-..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 45799999999999999999999999999998732210 0 0012
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEccCCCCCC-chhh-h-
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV-SPFE-R- 315 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~aD~vi~a~G~~p~~-~~~~-~- 315 (489)
.+...+....-+.|.+++. +..|+++.-.++.++.+|..+ |--.++++.||-+||-.... .++. +
T Consensus 110 e~~skl~~~a~~aGaki~n-~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 110 EFASKLAARALDAGAKIFN-GVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHHHhcCceeee-cceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 2333344445567899998 999999875544478787764 22478999999999976532 1222 1
Q ss_pred --cCCeec-CCcE--------EeCCCCCCCCCCeEEeccccc
Q 011267 316 --VGLNSS-VGGI--------QVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 316 --~gl~~~-~g~i--------~vd~~~~t~~~~Iya~GD~a~ 346 (489)
++++.. .+.. .|+.+ +--+||+|++|=.+.
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T-~eV~pgL~vaGMa~~ 229 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENT-GEVYPGLYVAGMAVN 229 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhcc-ccccCCeEeehhhHH
Confidence 122221 1111 12211 124799999996664
No 346
>PRK06185 hypothetical protein; Provisional
Probab=97.68 E-value=0.0006 Score=69.41 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=75.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc----------------hh------h-------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------LQ------R------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~----------------l~------~------------------- 245 (489)
...|+|||||++|+-+|..|++.|.+|+++++.+.+ +. .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 457999999999999999999999999999976311 00 0
Q ss_pred ---h--h--------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEE--eCCCc-EEEcCEEEE
Q 011267 246 ---L--F--------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTIVI 302 (489)
Q Consensus 246 ---~--~--------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~--~~~g~-~i~aD~vi~ 302 (489)
. + ...+.+.+.+.+++ .|++++. +++++++..+ ++.+..|. ..+|+ ++.||.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~-~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRM-GAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEe-CCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEE
Confidence 0 0 01223344444444 4899999 9999999854 44554444 34664 799999999
Q ss_pred ccCCCCCCchhhhcCCee
Q 011267 303 GIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 303 a~G~~p~~~~~~~~gl~~ 320 (489)
|.|.... +-+.+++..
T Consensus 164 AdG~~S~--vr~~~gi~~ 179 (407)
T PRK06185 164 ADGRHSR--VRALAGLEV 179 (407)
T ss_pred CCCCchH--HHHHcCCCc
Confidence 9998753 344455543
No 347
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.67 E-value=0.0004 Score=70.67 Aligned_cols=108 Identities=22% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Cc-------------c-------hh------hh-------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NH-------------L-------LQ------RL------------- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~-------------~-------l~------~~------------- 246 (489)
..+|+|||+|+.|+-+|..|.+.|.+|+++++. +. + +. ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999974 10 0 00 00
Q ss_pred ----------hC---------------HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 247 ----------FT---------------PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 247 ----------~~---------------~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
++ ..+.+.+.+.+.+ .|++++. ++++++++.+++ . ..|.+++|+++.||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~-~~~v~~i~~~~~-~-~~v~~~~g~~~~a~lv 160 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLM-PARCQSIAVGES-E-AWLTLDNGQALTAKLV 160 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEc-CCeeEEEEeeCC-e-EEEEECCCCEEEeCEE
Confidence 00 0112233333444 4799999 999999975433 3 3578889999999999
Q ss_pred EEccCCCCCCchhhhcCCe
Q 011267 301 VIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~ 319 (489)
|.|.|.... +-+.+++.
T Consensus 161 IgADG~~S~--vR~~~~~~ 177 (405)
T PRK08850 161 VGADGANSW--LRRQMDIP 177 (405)
T ss_pred EEeCCCCCh--hHHHcCCC
Confidence 999997653 33344443
No 348
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.67 E-value=0.0005 Score=72.81 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------------------------h--------h------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------R--------L------ 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------------------------~--------~------ 246 (489)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. . .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 45799999999999999999999999999987742100 0 0
Q ss_pred -------------------h-CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEcc
Q 011267 247 -------------------F-TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGI 304 (489)
Q Consensus 247 -------------------~-~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~aD~vi~a~ 304 (489)
+ ...+.+.+.+.+++. |+++++ ++++++++.++++....+...+|+ ++.+|.||.|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~-~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRW-KNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEe-CCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 0 011223445555554 799999 999999986544432233334554 69999999999
Q ss_pred CCCCC
Q 011267 305 GAKPT 309 (489)
Q Consensus 305 G~~p~ 309 (489)
|....
T Consensus 182 G~~S~ 186 (547)
T PRK08132 182 GARSP 186 (547)
T ss_pred CCCcH
Confidence 98765
No 349
>PLN02785 Protein HOTHEAD
Probab=97.67 E-value=0.00088 Score=70.99 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEEeC--CCcEE-------EcCEEEEccCCCCCCchhhhcCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVKLE--DGSTI-------DADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~~~--~g~~i-------~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
......++++.+ ++.|++|.-+++ +++.+|++. +|++. ....||+|.|.-....+|..+|+
T Consensus 228 ~~~~~~nl~Vl~-~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGI 300 (587)
T PLN02785 228 AAGNPNKLRVLL-HATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGI 300 (587)
T ss_pred hhcCCCCeEEEe-CCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCC
Confidence 345567899999 999999986543 368888874 45432 24789999997655455655554
No 350
>PLN02661 Putative thiazole synthesis
Probab=97.65 E-value=0.0011 Score=64.85 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcch-----------------------hhh---hC-----------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLL-----------------------QRL---FT----------- 248 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~l-----------------------~~~---~~----------- 248 (489)
...|+|||+|..|+-+|..|++. |.+|+++++...+- .+. ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35899999999999999999975 88999999864321 000 00
Q ss_pred HHHHHHHH-HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------C--C------cEEEcCEEEEccCCCC
Q 011267 249 PSLAQRYE-QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKP 308 (489)
Q Consensus 249 ~~~~~~l~-~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------~--g------~~i~aD~vi~a~G~~p 308 (489)
..+...+. +.+++.||+++. ++.+.++..+ ++++.++.+. + + ..+.|+.||+|||..+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~-~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFN-AVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEe-CeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 11111233 344457899999 9999998854 5677777741 1 1 2689999999999654
No 351
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.65 E-value=0.00051 Score=72.59 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------------------------h-
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------------~- 245 (489)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. .
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 46799999999999999999999999999997732100 0
Q ss_pred ---hhC-----------------HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEE
Q 011267 246 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTI 300 (489)
Q Consensus 246 ---~~~-----------------~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~v 300 (489)
.++ +.+.+.+.+.+.+ .|+++++ ++++++++.++++ + .++++ +| +++.||.|
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~-g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRF-GHEVTALTQDDDG-V-TVTLTDADGQRETVRARYV 166 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEc-CCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEE
Confidence 000 1222344455555 3899999 9999999866544 3 35554 56 47999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|-|.|....
T Consensus 167 VgADG~~S~ 175 (538)
T PRK06183 167 VGCDGANSF 175 (538)
T ss_pred EecCCCchh
Confidence 999997654
No 352
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.64 E-value=0.00012 Score=78.74 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=69.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. +..++..+.+...+.+++.||++++ ++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~-~~~v~~-- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHL-NCEIGR-- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEc-CCccCC--
Confidence 46899999999999999999999999999999887532 1124666666677888999999999 876521
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+++ ....+|.|++|+|..+.
T Consensus 386 --------~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --------DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 012222 13468999999998653
No 353
>PRK10015 oxidoreductase; Provisional
Probab=97.64 E-value=0.0005 Score=70.36 Aligned_cols=106 Identities=19% Similarity=0.313 Sum_probs=75.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hhhh-----------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQRL----------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~~~----------------------- 246 (489)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+ ++..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 47999999999999999999999999999876321 0000
Q ss_pred --------------------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 247 --------------------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 247 --------------------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.-..+-.++.+..++.|++++. +++|+++... ++++..+.. ++.++.||.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~-~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIP-GVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGV 162 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEEC-CcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCc
Confidence 0011223466677788999999 9999998753 455555554 4457999999999998
Q ss_pred CCCCchhhhcCC
Q 011267 307 KPTVSPFERVGL 318 (489)
Q Consensus 307 ~p~~~~~~~~gl 318 (489)
.. .+.+.+++
T Consensus 163 ~s--~v~~~lg~ 172 (429)
T PRK10015 163 NS--MLGRSLGM 172 (429)
T ss_pred ch--hhhcccCC
Confidence 54 33344444
No 354
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.62 E-value=0.00049 Score=69.19 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC----cc----------------hhh-----------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQR----------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~----~~----------------l~~----------------------- 245 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+ +.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 10 000
Q ss_pred ------------------hhCHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 246 ------------------LFTPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 246 ------------------~~~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..-..+.+.+.+.+.+.+ ++++. +++++++..+++ .+ .+.+.++ ++.+|+||-|-|.
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~-~~~v~~i~~~~~-~v-~v~~~~~-~~~adlvIgADG~ 158 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLID-NNQYQEVISHND-YS-IIKFDDK-QIKCNLLIICDGA 158 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEEC-CCeEEEEEEcCC-eE-EEEEcCC-EEeeCEEEEeCCC
Confidence 001223444555555554 88998 999999976543 33 4777776 8999999999998
Q ss_pred CCCC
Q 011267 307 KPTV 310 (489)
Q Consensus 307 ~p~~ 310 (489)
....
T Consensus 159 ~S~v 162 (374)
T PRK06617 159 NSKV 162 (374)
T ss_pred Cchh
Confidence 7653
No 355
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.62 E-value=0.00065 Score=68.80 Aligned_cols=107 Identities=30% Similarity=0.422 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCC-c-------------c-------h------hh------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------L-------L------QR------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~-~-------------~-------l------~~------------ 245 (489)
.+|+|||+|+.|+-+|..|++. |.+|+++++.. . + + +.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999999998 99999999831 0 0 0 00
Q ss_pred ----------hh---------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCE
Q 011267 246 ----------LF---------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299 (489)
Q Consensus 246 ----------~~---------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~ 299 (489)
.+ -..+.+.+.+.+.+ .|++++. +++++++...+ +.+ .+++++|+++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~ 160 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHC-PARVANVERTQ-GSV-RVTLDDGETLTGRL 160 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEc-CCEEEEEEEcC-CeE-EEEECCCCEEEeCE
Confidence 00 00122334444444 4799999 99999997543 333 47788888899999
Q ss_pred EEEccCCCCCCchhhhcCCe
Q 011267 300 IVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 300 vi~a~G~~p~~~~~~~~gl~ 319 (489)
||.|.|.... +.+.+++.
T Consensus 161 vI~AdG~~S~--vr~~~~~~ 178 (395)
T PRK05732 161 LVAADGSHSA--LREALGID 178 (395)
T ss_pred EEEecCCChh--hHHhhCCC
Confidence 9999998764 44444443
No 356
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.61 E-value=0.00017 Score=74.87 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.....+.+++.||++++ ++.+.. .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~-~ 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT-NVEVGK-D 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe-CCEECC-c
Confidence 457899999999999999999999999999998765421 113455666666778899999999 876532 1
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+.. +.....+|.||+|+|..+
T Consensus 220 ---------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 ---------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred ---------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111357899999999973
No 357
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.60 E-value=0.0003 Score=75.47 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~ 88 (489)
++++||+||||||+||++|..|++. |. +|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence 3478999999999999999999995 77 6999998764
No 358
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.0035 Score=64.26 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=75.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcch-------------------------h----hhhC--HHHHH
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLL-------------------------Q----RLFT--PSLAQ 253 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l-------------------------~----~~~~--~~~~~ 253 (489)
...+++|||+|++|+-+|..|++.|.. +.++++++.+- + ..+. ..+.+
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 456899999999999999999999998 99998874220 0 0111 12677
Q ss_pred HHHHHHHhcCcE--EEEcCceEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEccCC
Q 011267 254 RYEQLYQQNGVK--FVKVGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGA 306 (489)
Q Consensus 254 ~l~~~l~~~Gv~--~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~aD~vi~a~G~ 306 (489)
++...+++.++. +.+ ++.|+.+..++++....|++++|.+ +.||.||+|||.
T Consensus 87 y~~~~~~~y~~~~~i~~-~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 87 YIKDYLEKYGLRFQIRF-NTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHcCceeEEEc-ccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 888888888765 344 6777777766777777888888865 459999999997
No 359
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.60 E-value=0.0014 Score=66.48 Aligned_cols=135 Identities=16% Similarity=0.256 Sum_probs=89.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc----------------------------------------hhh
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------------------------------LQR 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~----------------------------------------l~~ 245 (489)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+ +++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3688999999999999999999999999999887422 111
Q ss_pred hh-C-HHHHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEccCCC--CCCchhhh
Q 011267 246 LF-T-PSLAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFER 315 (489)
Q Consensus 246 ~~-~-~~~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~vi~a~G~~--p~~~~~~~ 315 (489)
.+ + .++.++|+...++.++ .+.+ ++.+.++....+| ...|...++ ++.-+|.|++|+|-- |+.+....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~g-kW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKG-KWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCC-ceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 11 1 2567788888888886 5677 8888888765422 224555443 367799999999987 66554444
Q ss_pred cCCeecCCcEEeCCCCCC----CCCCeEEec
Q 011267 316 VGLNSSVGGIQVDGQFRT----RMPGIFAIG 342 (489)
Q Consensus 316 ~gl~~~~g~i~vd~~~~t----~~~~Iya~G 342 (489)
.+++.=.|.++=-..++. ..+.|.++|
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG 193 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVG 193 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEEC
Confidence 333222233322222222 346677887
No 360
>PLN02546 glutathione reductase
Probab=97.59 E-value=0.00019 Score=75.43 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=69.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+|+|||||+.|+..|..|++.+. +|+|+++.+... +.+ +. .+ .....+.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~l~~~ 302 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------DE---EV-----------RDFVAEQ 302 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------CH---HH-----------HHHHHHH
Confidence 45799999999999999999998865 799998765421 000 00 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCC-CC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~-~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.||+++.++.+.++... .. .+.+.++....+|.+++|+|..|..
T Consensus 303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 77899999999999888642 22 3444555545689999999988764
No 361
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.59 E-value=0.00025 Score=70.62 Aligned_cols=85 Identities=21% Similarity=0.451 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCC-cEEEEE-eCC--CcEEEcCEEEEccCCCCCCchhhhcCCeec--C
Q 011267 250 SLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDG-RVAAVK-LED--GSTIDADTIVIGIGAKPTVSPFERVGLNSS--V 322 (489)
Q Consensus 250 ~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~-~v~~v~-~~~--g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--~ 322 (489)
.+.+.+.+.+++. |+++++ +++|++|++.+++ ....+. +.+ .+++.++.|+++.|.-.- .+|.++|++-. -
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~-~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLqksgi~e~~gy 259 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHL-NHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEe-cCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHHHHcCChhhccc
Confidence 4455555666666 999999 9999999988777 322222 122 357999999999998764 78999998542 2
Q ss_pred CcEEeCC-CCCCCCC
Q 011267 323 GGIQVDG-QFRTRMP 336 (489)
Q Consensus 323 g~i~vd~-~~~t~~~ 336 (489)
|+.+|.. .+++..|
T Consensus 260 ggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNP 274 (488)
T ss_pred CCCcccceEEecCCH
Confidence 4455543 4555433
No 362
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.59 E-value=0.00067 Score=68.54 Aligned_cols=107 Identities=24% Similarity=0.329 Sum_probs=74.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------------------hh-----------------h--
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------QR-----------------L-- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------------------~~-----------------~-- 246 (489)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+... +. .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 3479999999999999999999999999999763210 00 0
Q ss_pred -------h---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 247 -------F---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 247 -------~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
+ ...+.+.+.+.+.+. ++. +. +++|++++.+++ .+ .|++++|+++.+|.||.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RF-GDEAESVRPRED-EV-TVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EE-CCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEe
Confidence 0 012233445555555 455 77 899999975443 33 477888989999999999
Q ss_pred cCCCCCCchhhhcCCe
Q 011267 304 IGAKPTVSPFERVGLN 319 (489)
Q Consensus 304 ~G~~p~~~~~~~~gl~ 319 (489)
.|.... +-+.+++.
T Consensus 163 dG~~S~--vr~~~g~~ 176 (388)
T PRK07494 163 DGRNSP--VREAAGIG 176 (388)
T ss_pred cCCCch--hHHhcCCC
Confidence 999763 33444443
No 363
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.58 E-value=5.6e-05 Score=75.02 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+||+|||||+||+++|..|+++|+ +|+|+|+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence 689999999999999999999988 69999998764
No 364
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.58 E-value=0.0002 Score=80.45 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
+++|+|||+|+.|+.+|..|+++|++|+++++.+.+.. . .++.++.....+.+++.||++++ ++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~-~~~vg~--- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIET-NKVIGK--- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEe-CCccCC---
Confidence 57899999999999999999999999999998764421 1 13567777778889999999999 764411
Q ss_pred CCCCcEEEEEeCCCc-EEEcCEEEEccCCC-CC
Q 011267 279 GSDGRVAAVKLEDGS-TIDADTIVIGIGAK-PT 309 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~-~i~aD~vi~a~G~~-p~ 309 (489)
.+.+++-. ...+|.||+|||.. |.
T Consensus 506 -------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 11221111 24589999999984 54
No 365
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.57 E-value=0.001 Score=67.59 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------h--------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R-------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------~-------------------- 245 (489)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999997632100 0
Q ss_pred -hh--------------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCcEEEcCEE
Q 011267 246 -LF--------------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGSTIDADTI 300 (489)
Q Consensus 246 -~~--------------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~aD~v 300 (489)
.+ -..+.+.+.+.+.+ .|+++++ +++|++++..+ +.+ .+++ .+++++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~-~~~v~~~~~~~-~~v-~v~~~~~~~~~~~~adlv 159 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKL-GAEMTSQRQTG-NSI-TATIIRTNSVETVSAAYL 159 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEE-CCEEEEEecCC-Cce-EEEEEeCCCCcEEecCEE
Confidence 00 01223334444444 4799999 99999998543 333 3444 34467999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|-|-|....
T Consensus 160 IgADG~~S~ 168 (400)
T PRK06475 160 IACDGVWSM 168 (400)
T ss_pred EECCCccHh
Confidence 999998754
No 366
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.56 E-value=0.00044 Score=70.54 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=67.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcchhh---------------hh-------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR---------------LF------------------------- 247 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~l~~---------------~~------------------------- 247 (489)
+|+|||||+.|+-+|..|++.| .+|+++++.+.+... .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 599999987432100 00
Q ss_pred CHH-----------------H-HHHHHHHHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 248 TPS-----------------L-AQRYEQLYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~-----------------~-~~~l~~~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+.. + ...+.+.|.+ .+..+++ +++|+++...+++ + .+.+++|+++.+|.||.|.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASF-GKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEc-CCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCcc
Confidence 000 0 0011122221 1456778 9999999865443 3 5788899999999999999976
Q ss_pred CC
Q 011267 308 PT 309 (489)
Q Consensus 308 p~ 309 (489)
..
T Consensus 159 S~ 160 (414)
T TIGR03219 159 SA 160 (414)
T ss_pred HH
Confidence 53
No 367
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.56 E-value=0.00082 Score=67.91 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=75.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh---------------------hh-----h--------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------RL-----F-------------- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------------------~~-----~-------------- 247 (489)
.+|+|||||+.|+-+|..|.+.|.+|+++++.+.+.. .. +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4699999999999999999999999999997744211 00 0
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 248 ------------------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 248 ------------------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
...+.+.+.+.+++.| ++++ +.+++++...++ .+ .|++.+|+++.||.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~--~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF--PARAQGLEVDPD-AA-TLTLADGQVLRADLVVG 161 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE--cceeEEEEecCC-eE-EEEECCCCEEEeeEEEE
Confidence 1123344556666777 8776 577888875433 33 57888888899999999
Q ss_pred ccCCCCCCchhhhcCCe
Q 011267 303 GIGAKPTVSPFERVGLN 319 (489)
Q Consensus 303 a~G~~p~~~~~~~~gl~ 319 (489)
|.|.... +.+.+++.
T Consensus 162 adG~~S~--vr~~~~~~ 176 (388)
T PRK07608 162 ADGAHSW--VRSQAGIK 176 (388)
T ss_pred eCCCCch--HHHhcCCC
Confidence 9998763 33444443
No 368
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.55 E-value=0.0002 Score=76.52 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=67.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH-
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW- 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (489)
..+|+|||||+.|+..|..|++.|. +|+||+..+... +. + +.... ......
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~-----~---d~eis--------------~~l~~~l 363 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PL-----L---DADVA--------------KYFERVF 363 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---cc-----C---CHHHH--------------HHHHHHH
Confidence 4689999999999999999999875 799999876421 00 0 00000 112222
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--C--EEEeC-------CC--------eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITN-------SG--------KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~--~--~v~~~-------~g--------~~i~yd~lvlATG~~~~~ 176 (489)
+++.+++++.++.|.+++... . .+.+. ++ +++.+|.+++|||..|..
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 356799999999999997643 2 23222 11 369999999999988763
No 369
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.55 E-value=0.00019 Score=77.32 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=68.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ++ .++.++.+...+.+++.|+++++ ++.+. ..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~-~~~v~-~d 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF-NTVFG-RD 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe-CCccc-Cc
Confidence 46799999999999999999999999999999886541 11 13556666667778899999999 77541 11
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+++. ...+|.||+|+|..+.
T Consensus 270 ---------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 ---------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred ---------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 122222 2358999999998753
No 370
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.55 E-value=0.00033 Score=71.39 Aligned_cols=89 Identities=22% Similarity=0.280 Sum_probs=68.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEE-EE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIK-NL 276 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~-~i 276 (489)
.+++|.|||+|+-|+.+|..|.+.|+.|+++++.+..-. ..++.++.+...+.|++.|++|+. ++++- .+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~-~~~vG~~i 200 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKL-NVRVGRDI 200 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEE-cceECCcC
Confidence 468999999999999999999999999999998865421 124567888888999999999999 87663 22
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 277 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.++.= .-+.|.|++++|..
T Consensus 201 -----------t~~~L-~~e~Dav~l~~G~~ 219 (457)
T COG0493 201 -----------TLEEL-LKEYDAVFLATGAG 219 (457)
T ss_pred -----------CHHHH-HHhhCEEEEecccc
Confidence 11111 12349999999974
No 371
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.55 E-value=0.0019 Score=61.67 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE 92 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~ 92 (489)
..+.+|+|||+|++||+||+.|.++. +|||+|.+...+.+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~rh----dVTLfEA~~rlGGh 45 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRRH----DVTLFEADRRLGGH 45 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhccc----ceEEEeccccccCc
Confidence 35678999999999999999998863 69999999877654
No 372
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.54 E-value=0.00047 Score=69.08 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=64.5
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchh--------hhhCHHHHH-------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--------RLFTPSLAQ------------------------- 253 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~--------~~~~~~~~~------------------------- 253 (489)
.++|||+|+.|+.+|..|.+. |.+|.++++.+.+.+ ...++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 378999999999999999987 999999998753211 001111100
Q ss_pred ---------HHHHH-HHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 254 ---------RYEQL-YQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 254 ---------~l~~~-l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+. +++.+..+++ +++|+++.. + .|++.+|+++.||.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~-~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVIL-GRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEe-cCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 11121 2333444777 889998852 2 255688999999999999998864
No 373
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.54 E-value=0.0026 Score=73.00 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=33.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
...||||||+|.||++||.++++.|. +|+|+|+.+..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence 36899999999999999999999876 79999998754
No 374
>PRK07208 hypothetical protein; Provisional
Probab=97.54 E-value=0.00011 Score=76.63 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|..++++.+..+... +|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~-~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVL-NAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEe-CCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 35677888888899999999 999999987655544444432 353 6899999999764
No 375
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.51 E-value=0.001 Score=75.08 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh----------hCHHHHHHHHHHHHhc-CcEEEEcCceEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQN-GVKFVKVGASIKN 275 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~----------~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~ 275 (489)
..+|+|||+|+.|+..|..+++.|.+|+++++.+.+.... -..++...+.+.+++. +++++. ++.|..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~-~t~V~~ 241 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLP-RTTAFG 241 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEc-CCEEEE
Confidence 4679999999999999999999999999999875442211 1123334455556555 599999 999988
Q ss_pred EEeCCCCcEEEEE-eC-------C----C--cEEEcCEEEEccCCCCCC
Q 011267 276 LEAGSDGRVAAVK-LE-------D----G--STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 276 i~~~~~~~v~~v~-~~-------~----g--~~i~aD~vi~a~G~~p~~ 310 (489)
+.. ++.+..+. .. + + .++.+|.||+|||..|..
T Consensus 242 i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 242 YYD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred Eec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 752 22222221 00 1 1 268999999999998753
No 376
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.51 E-value=0.0013 Score=57.20 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=34.0
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.|+++.....+|+++...+++. .+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 4666543367999998766553 678899999999999999995
No 377
>PRK09897 hypothetical protein; Provisional
Probab=97.51 E-value=0.0014 Score=68.36 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcch------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL------------------------------------------ 243 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l------------------------------------------ 243 (489)
++|+|||+|+.|+-+|..|.+.+. +|+++++...+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 479999999999999999987654 789998752211
Q ss_pred ----------------hhh-hCHHHHH---HHHHHHHhcC--cEEEEcCceEEEEEeCCCCcEEEEEeCC-CcEEEcCEE
Q 011267 244 ----------------QRL-FTPSLAQ---RYEQLYQQNG--VKFVKVGASIKNLEAGSDGRVAAVKLED-GSTIDADTI 300 (489)
Q Consensus 244 ----------------~~~-~~~~~~~---~l~~~l~~~G--v~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~aD~v 300 (489)
++. ++.-+.. .+.+.+.+.| +.++. +++|+++...+++ + .+.+.+ |..+.+|.|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~-~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~V 158 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYE-SCQVTDLQITNAG-V-MLATNQDLPSETFDLA 158 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEE-CCEEEEEEEeCCE-E-EEEECCCCeEEEcCEE
Confidence 000 0000111 1223334455 78888 8999999865433 3 466655 468999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|+|+|..+.
T Consensus 159 VLAtGh~~p 167 (534)
T PRK09897 159 VIATGHVWP 167 (534)
T ss_pred EECCCCCCC
Confidence 999997543
No 378
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.51 E-value=0.00021 Score=77.13 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=66.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. + ..++.++.....+.+++.|+++++ ++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~-~~~v~~-- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL-NCEVGK-- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC-CCEeCC--
Confidence 46799999999999999999999999999999876531 1 113455666666778899999999 876521
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+ +.+.+. ...+|.|++|+|..+
T Consensus 403 ---~-----i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 ---D-----ISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred ---c-----CCHHHH-HhcCCEEEEeCCCCC
Confidence 0 111111 236899999999864
No 379
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.47 E-value=0.0013 Score=59.02 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------------------hh------------------CH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------LF------------------TP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-------------------~~------------------~~ 249 (489)
...++|||+|+.|+-+|..|++.|.+|.++++...+-.. .+ ..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 467999999999999999999999999999987322100 00 11
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------CC-----cEEEcCEEEEccCCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------DG-----STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------~g-----~~i~aD~vi~a~G~~p~~ 310 (489)
.....+....-+.|++++. ...|+++.-.+++++.+|... .| -.+.+..||-|||-....
T Consensus 97 ~~~s~L~s~a~~aGakifn-~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFN-LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEE-TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEe-eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 2223333344458999999 999999876555788888774 22 379999999999987543
No 380
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.47 E-value=0.0011 Score=62.76 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=42.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCccccCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~ 108 (489)
.+.||||||||-.|.+.|.-|.++-.. +.+|+++|++....-....+|-+.+......+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp 144 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP 144 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence 367999999999999999999765321 24899999988754455666665554433333
No 381
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.46 E-value=0.0016 Score=65.91 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hh------h------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQ------R------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~------~------------------ 245 (489)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.. +. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 56999999999999999999999999999977431 00 0
Q ss_pred --h--h-------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccC
Q 011267 246 --L--F-------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIG 305 (489)
Q Consensus 246 --~--~-------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G 305 (489)
. + -+.+.+.+.+...+.|+++++ ++++++++..++..+ .|++ .+|+ ++.||+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~-~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRF-EASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEE-eeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCC
Confidence 0 0 112233444555678999999 999999975222222 4555 4664 689999999999
Q ss_pred CCCCC
Q 011267 306 AKPTV 310 (489)
Q Consensus 306 ~~p~~ 310 (489)
....+
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 87653
No 382
>PRK06126 hypothetical protein; Provisional
Probab=97.44 E-value=0.0016 Score=69.03 Aligned_cols=100 Identities=25% Similarity=0.378 Sum_probs=69.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------h--------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------Q-------------------- 244 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~-------------------- 244 (489)
..+|+|||||+.|+-+|..|++.|.+|+++++.+... .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 4679999999999999999999999999998762110 0
Q ss_pred -------h-----h----------------------hC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEE
Q 011267 245 -------R-----L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 245 -------~-----~----------------------~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
+ . .+ ..+.+.+.+.+++ .|+++++ ++++++++.++++ +. +.
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~-~~~v~~i~~~~~~-v~-v~ 163 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRY-GHRLTDFEQDADG-VT-AT 163 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEe-ccEEEEEEECCCe-EE-EE
Confidence 0 0 00 0122334444444 4899999 9999999865443 32 33
Q ss_pred e---CCCc--EEEcCEEEEccCCCCC
Q 011267 289 L---EDGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 289 ~---~~g~--~i~aD~vi~a~G~~p~ 309 (489)
+ .+|+ ++.+|.||.|.|....
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchH
Confidence 3 3454 6899999999997653
No 383
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.43 E-value=0.00064 Score=70.79 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=79.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||+|.+|+++|..|++.|+ +|+++|..+... .....+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~ 59 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI 59 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence 45689999999999999999999987 699998653200 0112345
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc---C
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---K 206 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~---~ 206 (489)
+++.|++++.+..+. ....+|.+|+++|..|.. |........++......+- +..... .
T Consensus 60 l~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~-~~~~~a~~~gi~v~~~~e~---~~~~~~~~~~ 121 (480)
T PRK01438 60 LEALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDA-PLLAAAADAGIPVWGEVEL---AWRLRDPDRP 121 (480)
T ss_pred HHHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCCC-HHHHHHHHCCCeecchHHH---HHHhhhccCC
Confidence 677899998875442 014589999999988753 4221211234444432222 222222 1
Q ss_pred CCcEEEECC-C--HHHHHHHHHHHhCCCcEEEE
Q 011267 207 AKKVVVVGG-G--YIGMEVAAAAVGWKLDTTII 236 (489)
Q Consensus 207 ~~~vvViG~-G--~~g~e~A~~l~~~g~~V~lv 236 (489)
.+.|.|-|+ | -+..-++..|...|.++...
T Consensus 122 ~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 122 APWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 223445453 1 24455666677777665543
No 384
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.43 E-value=0.0014 Score=65.78 Aligned_cols=96 Identities=24% Similarity=0.280 Sum_probs=69.7
Q ss_pred EEEECCCHHHHHHHHHH--HhCCCcEEEEccCCcc--hh-----------------------------------------
Q 011267 210 VVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQ----------------------------------------- 244 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l--~~~g~~V~lv~~~~~~--l~----------------------------------------- 244 (489)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876332 00
Q ss_pred -hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 245 -RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 245 -~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..-...+.+.+.+.++..|+ ++. +++|++++..++ ...|.+++|+++.|+.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~-~~~-~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGV-IRL-NARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCe-EEE-ccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 00012334455566664454 556 799999986544 34578899999999999999996554
No 385
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.00043 Score=68.00 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..++..+.+-+++.|-++.+ ++.|++|.-+ +|++.+|+++||+++.+..|+.-++.
T Consensus 264 Gavs~aia~~~~~~GaeI~t-ka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFT-KATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeee-hhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCch
Confidence 36778888999999999999 9999999854 58999999999999999888776653
No 386
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0011 Score=59.17 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEc--------------------cCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF--------------------PENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~--------------------~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
...+++|||+|+.+...|..+++...+..+++ .-+.+.....++++.+.+++..++.|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 34689999999999999999888765544443 2244455567789999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
++. ..|+++.. .++...+.+ +.+.+.||.||+|||....
T Consensus 87 i~t--EtVskv~~--sskpF~l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 87 IIT--ETVSKVDL--SSKPFKLWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred eee--eehhhccc--cCCCeEEEe-cCCceeeeeEEEeccccee
Confidence 998 67777763 334444444 5557999999999998765
No 387
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.40 E-value=0.00021 Score=71.93 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+|+|||||+.|+|+|..|++.|.+|+++++++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999977654
No 388
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.39 E-value=0.0017 Score=66.75 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=72.7
Q ss_pred cEEEECCCHHHHHHHHHHHh----CCCcEEEEccCC--cch-------------------h-------------h-----
Q 011267 209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL-------------------Q-------------R----- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~----~g~~V~lv~~~~--~~l-------------------~-------------~----- 245 (489)
.|+|||||+.|+-+|..|++ .|.+|+++++.+ ... + .
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 100 0 0
Q ss_pred ------------------hh--------------CHHHHHHHHHHHHhcC---cEEEEcCceEEEEEeC-----CCCcEE
Q 011267 246 ------------------LF--------------TPSLAQRYEQLYQQNG---VKFVKVGASIKNLEAG-----SDGRVA 285 (489)
Q Consensus 246 ------------------~~--------------~~~~~~~l~~~l~~~G---v~~~~~~~~v~~i~~~-----~~~~v~ 285 (489)
.+ ...+.+.+.+.+++.+ +++++ ++++++++.. +++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~-~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILN-PARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEec-CCeeEEEEeccccccCCCCce
Confidence 00 0123334455556654 99999 9999999742 122234
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.|++.+|+++.||+||-|-|....+
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChh
Confidence 6888999999999999999997653
No 389
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00065 Score=69.84 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=55.2
Q ss_pred cEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 232 ~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.-.++.+.+..+. +..+...+....++.|..++. ++.|+++....+ +..+|.+.-| .|+|..||-|+|++..
T Consensus 173 ~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE-~cpV~~i~~~~~-~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 173 YGGLYSPGDGVMD---PAGLCQALARAASALGALVIE-NCPVTGLHVETD-KFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred eeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEe-cCCcceEEeecC-CccceeccCc-ceecceEEechhHHHH
Confidence 3456667765443 335567788888999999999 999999986544 4448888888 5999999999998774
No 390
>PRK06996 hypothetical protein; Provisional
Probab=97.34 E-value=0.0019 Score=65.56 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC----CcEEEEccCCcc------------------hh-------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------LQ------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g----~~V~lv~~~~~~------------------l~------------------- 244 (489)
....|+|||||+.|+-+|..|++.| .+|+++++.+.. +.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4468999999999999999999987 469999875210 00
Q ss_pred --h------------------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEE
Q 011267 245 --R------------------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTI 300 (489)
Q Consensus 245 --~------------------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~v 300 (489)
. .. -..+.+.+.+.+++.|++++. ++++++++..+++ + .+.+.++ +++.||+|
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~-~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLT-STTAHAPAQDADG-V-TLALGTPQGARTLRARIA 166 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEc-CCeeeeeeecCCe-E-EEEECCCCcceEEeeeEE
Confidence 0 00 134566777888888999999 9999999754443 2 4666654 58999999
Q ss_pred EEccCCC
Q 011267 301 VIGIGAK 307 (489)
Q Consensus 301 i~a~G~~ 307 (489)
|-|-|..
T Consensus 167 IgADG~~ 173 (398)
T PRK06996 167 VQAEGGL 173 (398)
T ss_pred EECCCCC
Confidence 9999964
No 391
>PLN02268 probable polyamine oxidase
Probab=97.34 E-value=0.00023 Score=73.18 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=33.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
++|+|||||+|||+||+.|.+.|+ +|+|+|+.+..+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCc
Confidence 479999999999999999999886 6999999987653
No 392
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.0002 Score=72.25 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=65.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCC---ccccCCC------------CCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPAL---TKGYLFP------------LDKKPAR 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l---~~~~~~~------------~~~~~~~ 110 (489)
..+||+|||||.||..||...++.|. ++.|+.-+... +.+ |.. .|+.+.. .+.....
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~dtig~msCN-PaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ 78 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNLDTIGEMSCN-PAIGGPGKGHLVREIDALGGLMGKAADKAGIQ 78 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCCCceeecccc-cccCCcccceeEEeehhccchHHHhhhhcCCc
Confidence 45999999999999999999999986 46666654321 111 111 1111100 0000000
Q ss_pred CCCCccccCCCC--------CCCChhHHH-----HCCcEEEeCCcEEEEeCCC----CEEEeCCCeEEeeCcEEecCCCC
Q 011267 111 LPGFHTCVGSGG--------ERQTPEWYK-----EKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 111 ~~~~~~~~~~~~--------~~~~~~~~~-----~~~i~~~~~~~V~~id~~~----~~v~~~~g~~i~yd~lvlATG~~ 173 (489)
+.-.....|... ...+..+++ ..|+.++.+ .|.++..++ .-|.+.+|..+.++.+||+||..
T Consensus 79 ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 79 FRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred hhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 000000111100 000111221 247887764 677766533 35788999999999999999964
No 393
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.33 E-value=0.0023 Score=64.70 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=70.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------------h-------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------Q------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------------~------------------------- 244 (489)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999775210 0
Q ss_pred -------h--------hhC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEcCEEEEccC
Q 011267 245 -------R--------LFT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIG 305 (489)
Q Consensus 245 -------~--------~~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~aD~vi~a~G 305 (489)
. .++ ..+...+.+.+.+.|+++++ +.+++.+...++..+ .|.+. +|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVY-DADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEE-eeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCC
Confidence 0 000 12234455556667888888 888777753222222 46664 775 689999999999
Q ss_pred CCCC
Q 011267 306 AKPT 309 (489)
Q Consensus 306 ~~p~ 309 (489)
....
T Consensus 161 ~~S~ 164 (390)
T TIGR02360 161 FHGV 164 (390)
T ss_pred Cchh
Confidence 8764
No 394
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.32 E-value=0.0024 Score=60.26 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=54.3
Q ss_pred CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc------CcEEEEcCceEEEEEeCCCCcEEEEEeCC--C--cEEEcCE
Q 011267 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN------GVKFVKVGASIKNLEAGSDGRVAAVKLED--G--STIDADT 299 (489)
Q Consensus 230 g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~------Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~aD~ 299 (489)
|+.|---+|+.++++.. -++...+...+++. -+++.. +++|++|. ..+|+|.+|+..| | ..+.+|.
T Consensus 122 GHSvpRTHr~s~plppg--fei~~~L~~~l~k~as~~pe~~ki~~-nskvv~il-~n~gkVsgVeymd~sgek~~~~~~~ 197 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPPG--FEIVKALSTRLKKKASENPELVKILL-NSKVVDIL-RNNGKVSGVEYMDASGEKSKIIGDA 197 (477)
T ss_pred CCCCCcccccCCCCCCc--hHHHHHHHHHHHHhhhcChHHHhhhh-cceeeeee-cCCCeEEEEEEEcCCCCccceecCc
Confidence 45554455777766643 23444444444432 377888 99999998 4678888888754 3 3588999
Q ss_pred EEEccCCCCC--Cchhhhc
Q 011267 300 IVIGIGAKPT--VSPFERV 316 (489)
Q Consensus 300 vi~a~G~~p~--~~~~~~~ 316 (489)
||+|+|.-.. .++|+..
T Consensus 198 VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 198 VVLATGGFGYSDKELLKEY 216 (477)
T ss_pred eEEecCCcCcChHHHHHHh
Confidence 9999986544 3455554
No 395
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.32 E-value=0.00058 Score=72.50 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=65.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceE-EE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASI-KN 275 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v-~~ 275 (489)
..+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. ..++.+..+.-.+.+++.|++++. ++.+ .+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~-~~~~~~~ 213 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL-GVRVGED 213 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe-CCEECCc
Confidence 4578999999999999999999999999999997754311 113344445555667789999999 8765 33
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+... .+ ...+|.||+|+|..+.
T Consensus 214 ~~~~--------~~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 214 ITLE--------QL----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCHH--------HH----HhhCCEEEEeeCCCCC
Confidence 2210 00 1247999999998753
No 396
>PRK07538 hypothetical protein; Provisional
Probab=97.31 E-value=0.0021 Score=65.55 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=67.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------h------------------hh-------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------R------------------LF------- 247 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------~------------------~~------- 247 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+ + .+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 689999999999999999999999999997742100 0 00
Q ss_pred -------------------CHHHHHHHHHHHHh-cC-cEEEEcCceEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEE
Q 011267 248 -------------------TPSLAQRYEQLYQQ-NG-VKFVKVGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIV 301 (489)
Q Consensus 248 -------------------~~~~~~~l~~~l~~-~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~aD~vi 301 (489)
-..+.+.+.+.+.+ .| +.+++ ++++++++.++++.+ +.+.++ +++.||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~-~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRT-GHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEc-CCEEEEEEecCCceE--EEEeccCCCccceEEeeEEE
Confidence 01122233333333 36 46899 999999986655533 333332 489999999
Q ss_pred EccCCCCC
Q 011267 302 IGIGAKPT 309 (489)
Q Consensus 302 ~a~G~~p~ 309 (489)
-|-|....
T Consensus 159 gADG~~S~ 166 (413)
T PRK07538 159 GADGIHSA 166 (413)
T ss_pred ECCCCCHH
Confidence 99998654
No 397
>PRK13984 putative oxidoreductase; Provisional
Probab=97.29 E-value=0.00062 Score=73.02 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|..|+.+|..|.+.|.+|+++++.+.+.. ..+..++.....+.+++.|++++. ++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~~- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL-NTRVGKD- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC-CCEeCCc-
Confidence 567899999999999999999999999999988764311 113445555556778899999999 8776320
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+..++ ....+|.||+|+|..+
T Consensus 360 ---------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ---------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred ---------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999863
No 398
>PLN02568 polyamine oxidase
Probab=97.29 E-value=0.00033 Score=73.42 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCC--CCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~--~~~~V~li~~~~~~~ 90 (489)
+++.+||+|||||+|||+||..|++.|. +..+|+|+|+.....
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 4556899999999999999999999871 124799999988754
No 399
>PLN02985 squalene monooxygenase
Probab=97.27 E-value=0.00036 Score=72.91 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+..+||+|||||++|+++|..|++.|. +|+|+|+.+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence 4457899999999999999999999987 7999999754
No 400
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.26 E-value=0.00035 Score=69.58 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++||+|||||+||+++|..|++.|. +|+|+|+.++.+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG 37 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG 37 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence 3699999999999999999998875 799999987654
No 401
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.26 E-value=0.0031 Score=66.53 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------------------------------------- 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-------------------------------------------- 242 (489)
...|+|||+|..|+-+|..+++.|.+|.++++....
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 357999999999999999999999999998765210
Q ss_pred -----------------hh------------------h-------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 243 -----------------LQ------------------R-------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 243 -----------------l~------------------~-------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
+. + ..+..+...+.+.+++.||+++. ++.++++..++
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~-~~~v~~Li~~~ 174 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIRE-HALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEE-CeEeeeeEEcC
Confidence 00 0 01123445566677778899999 99999997655
Q ss_pred CCcEEEEEeC-------CC-cEEEcCEEEEccCC
Q 011267 281 DGRVAAVKLE-------DG-STIDADTIVIGIGA 306 (489)
Q Consensus 281 ~~~v~~v~~~-------~g-~~i~aD~vi~a~G~ 306 (489)
++++.++... ++ ..+.|+.||+|+|.
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 5677777653 22 36899999999995
No 402
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.00078 Score=68.08 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=67.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC------------------------------------------cchhh
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~------------------------------------------~~l~~ 245 (489)
-.|+|||||..|+|+|.+.++.|.++.++.... ++|..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 469999999999999999999998887764330 11111
Q ss_pred h-----------hCH-HHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 246 L-----------FTP-SLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 246 ~-----------~~~-~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
. .|. .+...+++.++. .++.++. ..|+++...++.++.+|.+.+|..+.|+.||++||
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q--~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTG 155 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ--GEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTG 155 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH--hhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeec
Confidence 1 111 223444454443 4667665 66777764434468899999999999999999999
No 403
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.25 E-value=0.00035 Score=69.94 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.||+|||||++|+.||..|++.|+ +|+|+|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 4699999999999999999999987 6999997654
No 404
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.24 E-value=0.00039 Score=68.97 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=34.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+|||||||+|||+||.+|.++|+. +++|+|.+...+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence 456899999999999999999999874 899999988764
No 405
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00037 Score=70.33 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=32.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|+|||+|||+||+.|+++|+ +|||+|..+..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccC
Confidence 479999999999999999999998 799999987754
No 406
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.20 E-value=0.0044 Score=62.66 Aligned_cols=96 Identities=21% Similarity=0.382 Sum_probs=67.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccc-----------hh---------------------h----------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------LQ---------------------R---------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~-----------l~---------------------~---------- 245 (489)
.|+|||+|+.|+-+|..|++.|.+|.++++. ++. +. .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 210 00 0
Q ss_pred ---h---hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC------C--cEEEcCEEEEccCCCC
Q 011267 246 ---L---FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ---~---~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~------g--~~i~aD~vi~a~G~~p 308 (489)
. ++ ..+-+.+.+...+.|++++. + .++++..+++ .+ .+.+.+ | .++.||.||.|.|...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~-~v~~v~~~~~-~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIH-G-LFLKLERDRD-GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEe-e-EEEEEEEcCC-eE-EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 0 01 12223455666778999977 5 6888875443 32 355442 2 3799999999999765
No 407
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.19 E-value=0.0045 Score=64.15 Aligned_cols=98 Identities=29% Similarity=0.399 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc---------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------------------------------------- 242 (489)
..|+|||+|..|+-+|..+++.|.+|.++++....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 46899999999999999999999999998764110
Q ss_pred ---------------hh-----------h------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 243 ---------------LQ-----------R------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 243 ---------------l~-----------~------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+. + .....+.+.+.+.+++.|++++. + .++.+.. +++++.++..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~-~-~v~~l~~-~~g~v~Gv~~- 157 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIR-G-FAEELAI-KNGKAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEE-e-EeEEEEe-eCCEEEEEEE-
Confidence 00 0 00123445556666778888887 5 6777764 3567766766
Q ss_pred CCcEEEcCEEEEccCCCCC
Q 011267 291 DGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~ 309 (489)
+++.+.++.||+|||....
T Consensus 158 ~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 DGELLKFDATVIATGGFSG 176 (466)
T ss_pred CCEEEEeCeEEECCCcCcC
Confidence 4568999999999997654
No 408
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.19 E-value=0.0049 Score=62.51 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=65.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------hh------h------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------QR------L------------------------ 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------~~------~------------------------ 246 (489)
+|+|||+|+.|+-+|..|++.|.+|.++++..... .. .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 68999999999999999999999999998763210 00 0
Q ss_pred --------hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeC-CCCcEEEEEe--CC-----C--cEEEcCEEEEccCCC
Q 011267 247 --------FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAK 307 (489)
Q Consensus 247 --------~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~~~v~~v~~--~~-----g--~~i~aD~vi~a~G~~ 307 (489)
++ ..+-+.+.+...+.|++++. + .+..+... ..+....|++ .+ | .++.|+.||.|.|..
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~-~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLIN-G-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEc-c-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 00 11223355566778999987 6 46666421 1122223432 21 3 479999999999987
Q ss_pred CC
Q 011267 308 PT 309 (489)
Q Consensus 308 p~ 309 (489)
+.
T Consensus 160 S~ 161 (398)
T TIGR02028 160 SR 161 (398)
T ss_pred hH
Confidence 63
No 409
>PLN02529 lysine-specific histone demethylase 1
Probab=97.18 E-value=0.00049 Score=74.11 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
....++|+|||||+||++||..|++.|+ +|+|+|+.+...
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 196 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG 196 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence 3467899999999999999999999987 699999987654
No 410
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00094 Score=72.17 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|.|||+|+.|+.+|..|.+.|+.|++++|.+++.. -.+|..+.++-.+++.+.||+|++ |++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~t-n~eigk~- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVT-NTEIGKH- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEe-ecccccc-
Confidence 468999999999999999999999999999999987522 114666777777899999999999 8755221
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+. -|+-.-+.|.||+|+|..-
T Consensus 1862 ---------vs-~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 ---------VS-LDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred ---------cc-HHHHhhccCeEEEEeCCCC
Confidence 11 2332345688999999863
No 411
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.17 E-value=0.00048 Score=72.05 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEccCCCCCCchhh
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~aD~vi~a~G~~p~~~~~~ 314 (489)
..+...+.+..++.|++++. +++|+++..+ ++. ..+.+.+ |+ ++.|+.||.|+|...+ .++.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~-~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~-~l~~ 221 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILT-RTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK-QFLD 221 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEc-CcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH-HHHh
Confidence 45555666678889999999 9999999754 333 3455443 43 6899999999998764 4433
No 412
>PRK11445 putative oxidoreductase; Provisional
Probab=97.14 E-value=0.0066 Score=60.46 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=66.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------hhhhCH-------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP------------------------------- 249 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------~~~~~~------------------------------- 249 (489)
.|+|||+|+.|+-+|..|++. .+|+++++.+.+. ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999999 9999999765210 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccCCCC
Q 011267 250 ------------------SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 250 ------------------~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.+.+ ..+.|++++. ++.++.++..+++ + .|.+ ++|+ ++.||.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~-~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYH-NSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEc-CCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCc
Confidence 01111222 2346899999 9999999865444 2 3444 5664 689999999999865
Q ss_pred C
Q 011267 309 T 309 (489)
Q Consensus 309 ~ 309 (489)
.
T Consensus 158 ~ 158 (351)
T PRK11445 158 M 158 (351)
T ss_pred H
Confidence 4
No 413
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.14 E-value=0.00054 Score=71.65 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEccCCCCCCchhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
+..+...+....++.|++++. ++.|+++..+ ++ ...|.+.++ .++.|+.||.|+|.... .++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~-~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~-~l~~ 220 (502)
T PRK13369 154 DARLVVLNALDAAERGATILT-RTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT-DVIH 220 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEec-CcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH-HHHh
Confidence 445666667778889999999 9999999854 23 234665554 35999999999998764 4433
No 414
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.13 E-value=0.00054 Score=71.61 Aligned_cols=56 Identities=20% Similarity=0.402 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|.++++ ++.|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~-~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLT-GQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeC-CceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 46778888999999999999 9999999864 345556666554 57999999999874
No 415
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=97.10 E-value=0.0017 Score=52.18 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=25.2
Q ss_pred CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHh
Q 011267 423 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 456 (489)
Q Consensus 423 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 456 (489)
.+-++||+++++|+|+++ .|--..+...|++|+
T Consensus 99 ~kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 99 GKGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp SEEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred CceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 356789999999999997 677778888888875
No 416
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.10 E-value=0.0048 Score=63.31 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCC-CCcEEEEEeCC-CcEEEcCEEEEccCCC-CCCchhhh
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIGAK-PTVSPFER 315 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~~~-g~~i~aD~vi~a~G~~-p~~~~~~~ 315 (489)
+.+.+.+.+++.|+++++ ++.++++..++ ++++.++...+ +.++.++.||+|+|-- .|.+++.+
T Consensus 125 l~~~L~~~a~~~Gv~i~~-~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRY-GIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHcCCEEEe-CCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 445556667788999999 99999998653 56777776543 3579999999999954 44445544
No 417
>PTZ00367 squalene epoxidase; Provisional
Probab=97.10 E-value=0.00056 Score=72.00 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+..+||+|||||++|+++|..|++.|. +|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence 356899999999999999999999987 799999875
No 418
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.06 E-value=0.0066 Score=64.62 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=39.0
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+++.||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|...
T Consensus 135 L~~~~~~~gv~i~~-~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 135 LYEQCLKLGVSFFN-EYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHcCCEEEe-ccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 44455667999999 9999999754 577776654 3564 589999999999643
No 419
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.05 E-value=0.00064 Score=72.37 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
|.+.||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~ 37 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV 37 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence 346799999999999999999999876 7999998653
No 420
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.04 E-value=0.00069 Score=72.08 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++.+|+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 46799999999999999999999987 799999875
No 421
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.00 E-value=0.0074 Score=64.44 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=35.7
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~ 307 (489)
.||+++. ++.++++..++++++.+|... +|+ .+.|+.||+|||--
T Consensus 146 ~gV~i~~-~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 146 GLVEKYE-GWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CCcEEEe-CcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3799999 999999876556688888764 453 58899999999973
No 422
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.97 E-value=0.00091 Score=69.87 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
..+.+.+.+.+++.|+++++ ++.|++|..+ ++++..|++.+|+++.+|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~-~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRY-RARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEe-CCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 46778888999999999999 9999999854 567788999999999999999998854
No 423
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.97 E-value=0.004 Score=65.27 Aligned_cols=127 Identities=22% Similarity=0.436 Sum_probs=86.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcc------hhhhhC-----HHHHHHHHHHHHhcCcEEEEcCce
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~------l~~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..+++|||.|..|.-....+.+. -.++|++...+++ +.+.+. +++.-.-.++.+++||+++. +..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~-~~~ 81 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYT-GEK 81 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEc-CCe
Confidence 46799999999998888888773 3468887655432 222222 23444455788999999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccc
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~ 346 (489)
++.|... .+ .|+.+.|.++.+|.+|+|||..|.........+. ++.+ +| +..+++|++|++.
T Consensus 82 v~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~----~v~~---~R-~i~D~~am~~~ar 143 (793)
T COG1251 82 VIQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLP----GVFV---YR-TIDDVEAMLDCAR 143 (793)
T ss_pred eEEeccC--cc--eEEccCCcEeecceeEEecCccccccCCCCCCCC----CeeE---Ee-cHHHHHHHHHHHh
Confidence 9999743 33 5788899999999999999999976543332211 1211 11 2356666666654
No 424
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.0014 Score=64.12 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+|+|+|||.+||++|++|++.+. +..|+|+|..+...
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 45789999999999999999999986 78899999988765
No 425
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.94 E-value=0.01 Score=60.97 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------h------hh----------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------Q------RL---------------------- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------~------~~---------------------- 246 (489)
.-.|+|||||+.|+-+|..|++.|.+|.++++..... . ..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 4579999999999999999999999999998763210 0 00
Q ss_pred ----------hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcEEEEEeCC-------C--cEEEcCEEEEccC
Q 011267 247 ----------FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRVAAVKLED-------G--STIDADTIVIGIG 305 (489)
Q Consensus 247 ----------~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~~~-------g--~~i~aD~vi~a~G 305 (489)
++ ..+.+.+.+..++.|++++. + .++++....+ +....|.+.+ | .++.||.||-|.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~-~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLIN-G-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEe-c-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 00 11223455666778999977 5 5777753211 1112344321 3 4799999999999
Q ss_pred CCCCCchhhhcCC
Q 011267 306 AKPTVSPFERVGL 318 (489)
Q Consensus 306 ~~p~~~~~~~~gl 318 (489)
... .+.+.+++
T Consensus 197 ~~S--~vrr~lg~ 207 (450)
T PLN00093 197 ANS--RVAKDIDA 207 (450)
T ss_pred cch--HHHHHhCC
Confidence 855 33344443
No 426
>PRK08275 putative oxidoreductase; Provisional
Probab=96.92 E-value=0.011 Score=62.60 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+.+.+++.||+++. ++.++++..++++++.++.. .+|+ .+.++.||+|+|...
T Consensus 139 i~~~L~~~~~~~gv~i~~-~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITN-RIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEc-ceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 344555666778999999 99999998654677777653 3564 588999999999854
No 427
>PLN02676 polyamine oxidase
Probab=96.90 E-value=0.0014 Score=68.18 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=35.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
....+||+|||||++||+||++|++.|.. +|+|+|+.....
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G 63 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG 63 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence 34578999999999999999999999752 699999987654
No 428
>PLN02985 squalene monooxygenase
Probab=96.90 E-value=0.011 Score=61.79 Aligned_cols=100 Identities=24% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------------------------------- 245 (489)
..+|+|||+|..|+-+|..|++.|.+|+++++......+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 347999999999999999999999999999976210000
Q ss_pred ---------------------hhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEe--CCCc--EEEcCE
Q 011267 246 ---------------------LFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKL--EDGS--TIDADT 299 (489)
Q Consensus 246 ---------------------~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g~--~i~aD~ 299 (489)
.....+.+.+.+.+++. ||+++. + +++++..+ ++.+.+|++ .+|+ ++.||+
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdL 199 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-G-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPL 199 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-e-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCE
Confidence 00112334445555444 688877 5 56666533 455545554 4565 367999
Q ss_pred EEEccCCCCC
Q 011267 300 IVIGIGAKPT 309 (489)
Q Consensus 300 vi~a~G~~p~ 309 (489)
||.|.|....
T Consensus 200 VVgADG~~S~ 209 (514)
T PLN02985 200 TVVCDGCYSN 209 (514)
T ss_pred EEECCCCchH
Confidence 9999998764
No 429
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.89 E-value=0.0032 Score=64.66 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=27.5
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
|||+|.||++||.++++.|. +|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 79999999999999999976 7999999864
No 430
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.89 E-value=0.00081 Score=65.20 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeC-CCCcEEEEEeCC--Cc----EEEcCEEEEccCCCCCCchhhhcCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAG-SDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~~~v~~v~~~~--g~----~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
...++...+++.++++++ ++.|++|..+ +++++++|++.+ +. .+.++.||+|.|..-...+|..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~-~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLT-NARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEE-SEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEc-CcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 345666767666999999 9999999542 466777777643 33 5778999999997655477878777
No 431
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.86 E-value=0.0069 Score=59.50 Aligned_cols=101 Identities=25% Similarity=0.414 Sum_probs=71.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhh----------CHHHHHHHHHHHHhc--CcEEEEcCceE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN--GVKFVKVGASI 273 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~----------~~~~~~~l~~~l~~~--Gv~~~~~~~~v 273 (489)
+.++|+|+|+|..|+-+...|-..-.+|++|.+++.++-.-+ -..+.+.+....++. +++++. +.-
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e--Aec 131 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE--AEC 131 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe--ccc
Confidence 568999999999999999998888899999999876532111 235666666666655 566655 566
Q ss_pred EEEEeCCCCcEEEEE--eCCC----cEEEcCEEEEccCCCCCC
Q 011267 274 KNLEAGSDGRVAAVK--LEDG----STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~--~~~g----~~i~aD~vi~a~G~~p~~ 310 (489)
..+++ +.+.+.++ ++++ ..+.+|.+|+|+|..|++
T Consensus 132 ~~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 132 TKIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred Eeecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 66653 23322222 3344 368999999999999886
No 432
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.86 E-value=0.011 Score=62.87 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCC
Q 011267 252 AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 306 (489)
Q Consensus 252 ~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~ 306 (489)
...+.+.+++.||+++. ++.++++..+ ++++.+|... +|+ .+.|+.||+|||-
T Consensus 139 ~~~L~~~~~~~gv~i~~-~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 139 LHTLFERTSGLNVDFYN-EWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHhCCCEEEe-CcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 33455556667999999 9999999854 6888887764 332 5789999999994
No 433
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.86 E-value=0.011 Score=63.63 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=39.2
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~ 307 (489)
+.+.+++.||+++. ++.++++..+ ++++.+|... +|+ .+.|+.||+|||--
T Consensus 176 L~~~~~~~gV~i~~-~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 176 LSRQIAAGTVKMYT-RTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHhcCCEEEe-ceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 33455678999999 9999998753 5788887764 453 58999999999963
No 434
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.85 E-value=0.012 Score=60.40 Aligned_cols=56 Identities=9% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~-~~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+.+.+++ .||++++ ++.++++..+ ++++.++. ..+++ ++.|+.||+|+|.-.
T Consensus 130 l~~~L~~~~~~~~gV~i~~-~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIE-NCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHhcCCCEEEE-CcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 34445555554 5999999 9999998743 56666654 33454 589999999999743
No 435
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0014 Score=65.07 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+...||+|||+|++||++|+.|.+.|+ +|+|+|..+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence 567899999999999999999999998 699999988764
No 436
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.85 E-value=0.0098 Score=62.28 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 469999999999999999999999999999874
No 437
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.85 E-value=0.0019 Score=70.77 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
No 438
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.83 E-value=0.01 Score=61.84 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~aD~vi~a~G~~p~ 309 (489)
.+...+.+.+++ .||+++. ++.++++..+ ++++.++...+ + ..+.++.||+|+|....
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~-~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIE-GENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEE-CeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 344556666666 6899999 9999999753 56676666544 3 36899999999998654
No 439
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0047 Score=61.29 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.-.|+|||||..|+|.|.+.++.|.+.+++...
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 457999999999999999999999887776543
No 440
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.77 E-value=0.0017 Score=68.11 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
..+||||||+| ||++||.++++.|. +|+|||+.+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence 47899999999 99999999999986 799999987643
No 441
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.76 E-value=0.0015 Score=70.36 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+||||||||.||++||.++++.|. +|+||++.+.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~~ 39 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVPA 39 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCCC
Confidence 346899999999999999999999876 7999998653
No 442
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0042 Score=59.22 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=78.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccc-----------hhhhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~-----------l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..-.|+|||||+.|...|-..++.|.+.-++..+ .+. .+...++++...++++.++..|+++. -.+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn-~qr 288 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMN-LQR 288 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhh-hhh
Confidence 3457999999999999999999998765443221 111 11235788999999999999999988 888
Q ss_pred EEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 273 IKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 273 v~~i~~~~-~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.+++++.. .+....|++++|-.+++..+|++||.+
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 88887632 244568999999999999999999975
No 443
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.75 E-value=0.012 Score=62.69 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=33.0
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
....+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456789999999999999999999999999999864
No 444
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.75 E-value=0.0015 Score=69.98 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence 45799999999999999999999876 7999999753
No 445
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.73 E-value=0.0041 Score=61.92 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=54.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------hhCHH------HHHHHHHHHHhcCcEEEEcCceEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPS------LAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------~~~~~------~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.++++|||||..|++.|..|++.|.+|+++++.+.+..+ .|+.. +...+.+.-..-.|++++ .++|+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~T-yaeV~ 202 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELIT-YAEVE 202 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeee-eeeee
Confidence 468999999999999999999999999999999866432 12221 223344555567899999 99999
Q ss_pred EEE
Q 011267 275 NLE 277 (489)
Q Consensus 275 ~i~ 277 (489)
++.
T Consensus 203 ev~ 205 (622)
T COG1148 203 EVS 205 (622)
T ss_pred eec
Confidence 986
No 446
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.73 E-value=0.0016 Score=66.97 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=29.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
||||||||+||..+|..|++.+.+..+|+|||++...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 7999999999999999999998534799999998653
No 447
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.73 E-value=0.0022 Score=60.58 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
++|++|||+|.+|+.+|..|.++|. +|.|||+.++.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCCC
Confidence 4799999999999999998888886 7999999998753
No 448
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.73 E-value=0.015 Score=60.95 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999863
No 449
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.73 E-value=0.019 Score=61.48 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=67.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchhhh---------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL--------------------------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~~~--------------------------------------- 246 (489)
..|+|||+|..|+-+|..+++. |.+|.++++.+......
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 4699999999999999999998 99999988653100000
Q ss_pred -------------------h-------------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEE
Q 011267 247 -------------------F-------------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 247 -------------------~-------------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
| +..+...+.+.+++.| |+++. ++.+.++..+ ++++.+|
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~-~~~v~~Li~~-~g~v~Gv 169 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLN-RVFITDLLVD-DNRIAGA 169 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEe-CCEEEEEEEe-CCEEEEE
Confidence 0 0112223334455555 99999 9999998743 4666666
Q ss_pred Ee---CCCc--EEEcCEEEEccCCC
Q 011267 288 KL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 288 ~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
.. .+++ .+.|+.||+|+|..
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCch
Confidence 42 3554 68999999999953
No 450
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.71 E-value=0.0042 Score=57.36 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
+|+|||+|+.|+.+|..|+..|.+|++++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence 5899999999999999999999999999987
No 451
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.71 E-value=0.0019 Score=68.44 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||+|.||++||.++++.|. +|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 46899999999999999999999986 699999987
No 452
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.71 E-value=0.0023 Score=69.47 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++|++||+.|.+.|+ +|+|+|+....+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence 456899999999999999999999887 699999987654
No 453
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.70 E-value=0.0019 Score=65.10 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|+|||||+||+.||..|++.|. +|+|+|..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence 379999999999999999999987 7999997654
No 454
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.66 E-value=0.022 Score=61.33 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcchh----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ---------------------------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~l~---------------------------------------- 244 (489)
....|+|||+|+.|+.+|..|+++ |.+|.++++.+....
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 356899999999999999999995 999999987621100
Q ss_pred -----h------h--------------hC-HHHHHHHHHHHHhcC--cEEEEcCceEEEEEeCCCC-cEEEEEeC-----
Q 011267 245 -----R------L--------------FT-PSLAQRYEQLYQQNG--VKFVKVGASIKNLEAGSDG-RVAAVKLE----- 290 (489)
Q Consensus 245 -----~------~--------------~~-~~~~~~l~~~l~~~G--v~~~~~~~~v~~i~~~~~~-~v~~v~~~----- 290 (489)
. . +. ..+.+.+.+.+++.| +++.. ++++++++.++++ ..+.+++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~-g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDY-GREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEe-CcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0 0 00 123344556666665 57788 9999999865332 22245553
Q ss_pred -CC--cEEEcCEEEEccCCCCC
Q 011267 291 -DG--STIDADTIVIGIGAKPT 309 (489)
Q Consensus 291 -~g--~~i~aD~vi~a~G~~p~ 309 (489)
+| +++.||.||-|-|.+..
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CCCceEEEEeCEEEECCCCchH
Confidence 35 57999999999997543
No 455
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.019 Score=61.10 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+...+.+.+++.||+++. ++.++++.. +++++.++.. .+|+ .+.|+.||+|+|...
T Consensus 137 i~~~L~~~~~~~gi~i~~-~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYD-EWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHhhCCCEEEe-CcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 344566667778999999 999999874 3567666653 4554 589999999999754
No 456
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.62 E-value=0.0019 Score=69.03 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~li~~~~~ 88 (489)
.+||||||||.||++||.++++. |. +|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence 57999999999999999999997 54 7999999764
No 457
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.58 E-value=0.0026 Score=67.71 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEcC-EEEEccCCC-CCCchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDAD-TIVIGIGAK-PTVSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~aD-~vi~a~G~~-p~~~~~~~ 315 (489)
...+...+.+..++.|+++++ ++.++++..+++++|++|.... ++ ++.++ .||+|+|-- -|.+++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~-~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWL-DSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEe-CCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 445666677788889999999 9999999876678888876643 33 47787 588888754 44445444
No 458
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.57 E-value=0.0037 Score=60.43 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
-+++++|||||.-||..+--..+.|- +||+||--++..-. .+. .+ ....+..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~~---------mD~-----Ei-----------sk~~qr~ 261 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGGV---------MDG-----EI-----------SKAFQRV 261 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhccc---------cCH-----HH-----------HHHHHHH
Confidence 36789999999999999998889875 89999965543110 000 00 1224566
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC---EEEeCC---C--eEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~---~v~~~~---g--~~i~yd~lvlATG~~~~ 175 (489)
+.+.++.|+++++|...++... .+.+.+ + +++++|.|++++|-+|.
T Consensus 262 L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 262 LQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 7889999999999999987654 333332 2 46899999999998775
No 459
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.57 E-value=0.0029 Score=62.05 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.+|||||||.+|+++|..|.+.|+ +|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence 5689999999999999999999998 7999998654
No 460
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.55 E-value=0.027 Score=59.99 Aligned_cols=34 Identities=35% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~ 44 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSA 44 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3469999999999999999999999999998764
No 461
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.50 E-value=0.0032 Score=66.65 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~aD-~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.|+++++ ++.++++..+ +++|.+|... +|+ ++.++ .||+|+|.-.+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~-~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWT-NTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEe-CCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 456777778888899999999 9999999854 6788887663 343 47784 68888886543
No 462
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.48 E-value=0.032 Score=59.97 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 46999999999999999999999999998764
No 463
>PRK02106 choline dehydrogenase; Validated
Probab=96.45 E-value=0.0038 Score=66.31 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=47.3
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEccCCCCCCchhhhcCCee
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
++....++.++++++ ++.|++|..+ ++++++|+..+. ..+.++.||+|.|..-...+|..+|+-.
T Consensus 206 ~l~~a~~~~nl~i~~-~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 206 YLDPALKRPNLTIVT-HALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred hhccccCCCCcEEEc-CCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 344444567799999 9999999865 567778877442 1468999999999766556777777643
No 464
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.43 E-value=0.003 Score=69.42 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=30.5
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+|+|||||+||++||..|++.+. ..+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~-G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDP-AHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCC-CCeEEEEecCCC
Confidence 79999999999999999999832 348999999875
No 465
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.43 E-value=0.032 Score=59.47 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=36.5
Q ss_pred HHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 255 YEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+.+.+++ .||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|..
T Consensus 143 L~~~~~~~~gv~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 143 LYSRALRFDNIHFYD-EHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHhcCCCEEEE-CCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3444444 5899998 9999998743 566666553 3564 58999999999975
No 466
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.42 E-value=0.031 Score=59.64 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999998743
No 467
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.41 E-value=0.0055 Score=44.91 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred EECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 212 ViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
|||+|..|+-+|..|++.|.+|+++++.+++-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999986643
No 468
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.047 Score=54.96 Aligned_cols=101 Identities=25% Similarity=0.375 Sum_probs=63.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEccCCcc------------------------------------hhh---
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL---DTTIIFPENHL------------------------------------LQR--- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~---~V~lv~~~~~~------------------------------------l~~--- 245 (489)
.+|+|||+|++|+.+|..|.+.-. .++++++.+++ |..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 479999999999999999976532 27888766322 100
Q ss_pred -------------------hhCHHHHHHHHHHHHhcC---cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 246 -------------------LFTPSLAQRYEQLYQQNG---VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 246 -------------------~~~~~~~~~l~~~l~~~G---v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
.|+.-+.+.+...+++.- +.++. +..+.+...+++....+...+|....||.+|++
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~--~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR--EEATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe--eeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 011112222222222222 44443 555566554445556678889999999999999
Q ss_pred cCCCCCC
Q 011267 304 IGAKPTV 310 (489)
Q Consensus 304 ~G~~p~~ 310 (489)
||..+..
T Consensus 160 tgh~~~~ 166 (474)
T COG4529 160 TGHSAPP 166 (474)
T ss_pred ccCCCCC
Confidence 9987653
No 469
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.37 E-value=0.02 Score=60.46 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=38.6
Q ss_pred HHHHHHHHHHh-cCcEEEEcCceEEEEEeCC-CCcEEEEEeC-CCc--EEEcCEEEEccCCC
Q 011267 251 LAQRYEQLYQQ-NGVKFVKVGASIKNLEAGS-DGRVAAVKLE-DGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 251 ~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~~-~g~--~i~aD~vi~a~G~~ 307 (489)
+...+.+.+++ .||+++. ++.++++..++ ++++.++... +|+ .+.++.||+|||--
T Consensus 136 i~~~L~~~~~~~~gi~i~~-~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 136 IVTTLTEQVLQRPNIEIIS-QALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHhhcCCcEEEE-CcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 33444454544 4899998 99999987543 3677777553 454 37899999999973
No 470
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.35 E-value=0.042 Score=55.72 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCcE------EEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEE
Q 011267 218 IGMEVAAAAVGWKLDT------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVK 288 (489)
Q Consensus 218 ~g~e~A~~l~~~g~~V------~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~ 288 (489)
+++|+-..|.+.-..+ .-+.+.. + .--+.+..-+.+.|+++||+|.+ |++|+++.-+.+ ..+..+.
T Consensus 174 Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~-Y---NQyeSii~Pl~~~L~~~GV~F~~-~t~V~di~~~~~~~~~~~~~i~ 248 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHEIPGLNDLSGLDRTK-Y---NQYESIILPLIRYLKSQGVDFRF-NTKVTDIDFDITGDKKTATRIH 248 (500)
T ss_pred hHHHHHHHHHHHHHhcCCCCCccccccCc-c---ccHHHHHHHHHHHHHHCCCEEEC-CCEEEEEEEEccCCCeeEEEEE
Confidence 5677777777653322 1222221 1 12346777899999999999999 999999975322 2233444
Q ss_pred e-CCCc--EE---EcCEEEEccCCCC
Q 011267 289 L-EDGS--TI---DADTIVIGIGAKP 308 (489)
Q Consensus 289 ~-~~g~--~i---~aD~vi~a~G~~p 308 (489)
+ .+|+ +| +-|+|++..|..-
T Consensus 249 ~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 249 IEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred EEcCCCeeEEEeCCCCEEEEECCccc
Confidence 4 3442 23 3588999888643
No 471
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.27 E-value=0.0048 Score=64.76 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...++||||||||.||+.||.++++.|. +|.|+|+-+.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~~ 40 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAPP 40 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEcccc
Confidence 3467899999999999999999999986 7999998653
No 472
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.25 E-value=0.028 Score=58.85 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEEEccCCCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~--g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.++ .||+++. ++.++++.. +++++.++...+ |+ .+.++.||+|+|...
T Consensus 135 ~L~~~~~-~gV~i~~-~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 135 HLLQELV-PHVTVVE-QEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHh-cCCEEEE-CeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 3334333 5888888 888888864 356777766543 33 688999999999754
No 473
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.23 E-value=0.011 Score=64.95 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 241 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~ 241 (489)
+|+|||||+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998753
No 474
>PLN02815 L-aspartate oxidase
Probab=96.20 E-value=0.037 Score=58.88 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..|+|||+|..|+-+|..+++.| +|.++++.
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 47999999999999999999999 88888765
No 475
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.19 E-value=0.054 Score=58.46 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 306 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~ 306 (489)
+.+.+++.||+++. ++.++++.. +++++.++.. .+|+ .+.|+.||+|||-
T Consensus 164 L~~~~~~~gv~i~~-~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 164 VDNEAIKLGVPVHD-RKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHhCCCEEEe-eEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 33455678999999 999999985 3577777665 3564 4689999999994
No 476
>PLN03000 amine oxidase
Probab=96.14 E-value=0.0076 Score=65.69 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++|+.||+.|++.|+ +|+|+|+.+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence 356899999999999999999999987 699999987754
No 477
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.02 E-value=0.042 Score=57.65 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+.+.+++. ||+++. ++.++++..+ ++++.++...+ ++ .+.++.||+|+|--.
T Consensus 138 l~~~L~~~~~~~~gV~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 138 IMRALIAAVRATPSITVLE-GAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHhCCCCEEEE-CcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 344455555554 899999 9889998643 56777776543 32 589999999999743
No 478
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.01 E-value=0.072 Score=56.70 Aligned_cols=52 Identities=25% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 254 RYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 254 ~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
.+.+.+.+ .||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|..
T Consensus 137 ~L~~~~~~~~~i~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 137 TLFQTSLTYPQIMRYD-EWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHhcCCCEEEe-CeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 33444434 4789888 8999998754 577776653 4563 68899999999953
No 479
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.027 Score=58.13 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=59.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|+|+|.+|+.+|..|.+.|.+|+++++... +.+. ...+.+.+.|++++. +....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~-~~~~~l~~~~~~~~~-~~~~~~---------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLK-EALEELGELGIELVL-GEYPEE---------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHH-HHHHHHHhcCCEEEe-CCcchh----------
Confidence 468999999999999999999999999999987641 1222 222346677888776 432210
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
..-.+|.||.++|..|+.+.+
T Consensus 65 -------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 -------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred -------HhhcCCEEEECCCCCCCCHHH
Confidence 012479999999998887654
No 480
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.99 E-value=0.01 Score=56.42 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+...||+|||+|.|||.||.+|++.|. +|+|+|.|+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccccc
Confidence 456899999999999999999999987 79999998764
No 481
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=95.98 E-value=0.0077 Score=62.89 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=44.5
Q ss_pred HHhcCcEEEEcCceEEEEEeCCC--CcEEEEEeC---CCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 259 YQQNGVKFVKVGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 259 l~~~Gv~~~~~~~~v~~i~~~~~--~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
++..+++++. ++.|.+|..+++ +++++|... +|+ ++.|+.||+|.|..-+..+|..++..
T Consensus 224 ~~~~n~~l~~-~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 224 APSERFTLLT-NHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred ccCCCEEEEc-CCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 3455699999 999999986644 357666443 343 58999999999988776777666554
No 482
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.97 E-value=0.1 Score=55.68 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=34.1
Q ss_pred HhcCcEEEEcCceEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 260 QQNGVKFVKVGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
++.+++++. ++.++++..+++ +++.+|.. .+|+ .+.++.||+|||...
T Consensus 137 ~~~~~~i~~-~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFE-RIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEc-ccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 334567777 888888875432 67878764 3554 578999999999753
No 483
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.95 E-value=0.075 Score=56.68 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 011267 256 EQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 306 (489)
Q Consensus 256 ~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~ 306 (489)
.+.+.+ .||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|.
T Consensus 140 ~~~~~~~~~i~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 140 FQTSLKYPQIQRFD-EHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHhhcCCCcEEEe-CeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 333334 3789988 9999998753 567766543 4663 6899999999994
No 484
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=95.88 E-value=0.00023 Score=57.43 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=28.8
Q ss_pred cccccceeeeeecceecC--CCCCceeee-ccccccccccccccc
Q 011267 2 ASVSNSLSFKHGLSLWCP--QSPSLHRIR-HSSAKNFQRRGFVVA 43 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 43 (489)
.+.+||||+.+||+|+.+ |+..|.+.. .++.+..+.|+..+.
T Consensus 61 i~~~np~p~vcGrvCp~p~~Ce~~C~r~~~~pV~I~~l~r~~~d~ 105 (111)
T PF14691_consen 61 IREDNPFPAVCGRVCPHPKQCESACRRGKGEPVAIRALERFIADY 105 (111)
T ss_dssp HHHH-TTHHHHHHH--GGGSGGGG-GGGST-S--HHHHHHHHHHH
T ss_pred HHHhCCCcccccCCCCCcchHHHHccCCCCCCCcHHHHHHHHHHH
Confidence 457899999999999998 999999976 666677777776554
No 485
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.82 E-value=0.0079 Score=64.22 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.7
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
|||||+|.||++||.++++.|. +|+|||+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence 6999999999999999999876 799999976
No 486
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=95.78 E-value=0.013 Score=56.86 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.....||+|||||.+|-+.|+.|.+.|. +|.+||++-.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~ 79 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLS 79 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEecccc
Confidence 3456899999999999999999999986 7999999743
No 487
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.74 E-value=0.015 Score=56.86 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..+..|-|||+|+-|-..|..|.+.-. ...+|.-+=.+. |+.......|+. ....
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek---~nm~kiLPeyls---------------------~wt~ 400 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK---YNMEKILPEYLS---------------------QWTI 400 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc---CChhhhhHHHHH---------------------HHHH
Confidence 456889999999999999999976521 122332221221 111100000110 1122
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+-.++.|+.++.+..|.++.... -.+.+.||.++..|.+|+|+|..|+.
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 33567799999998888876544 46778999999999999999998863
No 488
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.72 E-value=0.05 Score=53.58 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..+|+|||||..|+-.|..|.++|.+|.+++.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeec
Confidence 357999999999999999999999999999876
No 489
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.69 E-value=0.13 Score=54.31 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHHHHhc-CcEEEEcCceEEEEEeCC-----CCcEEEEEeC---CCc--EEEcCEEEEccCCCC
Q 011267 254 RYEQLYQQN-GVKFVKVGASIKNLEAGS-----DGRVAAVKLE---DGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 254 ~l~~~l~~~-Gv~~~~~~~~v~~i~~~~-----~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.+++. ||+++. ++.++++..++ ++++.+|... +|+ .+.++.||+|+|.-.
T Consensus 143 ~L~~~~~~~~~I~v~~-~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 143 TLVERARNHPNITVLE-RHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHhCCCcEEEe-eEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 344444443 899999 99988887433 3678777753 354 589999999999754
No 490
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.61 E-value=0.021 Score=52.58 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=57.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE----------E--EEcCceEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK----------F--VKVGASIK 274 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~----------~--~~~~~~v~ 274 (489)
+.+|||||..|+.+|..|+.+- .++.++..++-+-+ . .--..+.+++++..|+ + .. +. |.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks-v---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~-~~-v~ 74 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS-V---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFL-ND-VV 74 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH-H---hhHHHHHHHHHhcCccccchhhhcccHHHHH-Hh-hh
Confidence 3689999999999999998763 46777766542211 1 1112333444444433 1 00 11 33
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.. +-..+++++|.++.++.+++|+|.+|.
T Consensus 75 ~~~s----~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 75 TWDS----SEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred hhcc----ccceEEecCCceeeEEEEEEecCCCcc
Confidence 3321 123688999999999999999999996
No 491
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.60 E-value=0.038 Score=51.63 Aligned_cols=34 Identities=41% Similarity=0.564 Sum_probs=28.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC------CcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g------~~V~lv~~~ 239 (489)
..++++|+|||.+|+-.|+.|.+.. ..+++++..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3488999999999999999999886 578888755
No 492
>PLN02976 amine oxidase
Probab=95.55 E-value=0.018 Score=65.54 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++|+++|+.|.+.|+ +|+|+|+.+...
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~vG 729 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRIG 729 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCCC
Confidence 346899999999999999999999987 699999986653
No 493
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.49 E-value=0.0034 Score=55.59 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..||||||+|.|||+||+.+.++.. +.+|.+||..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rP-dlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRP-DLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCC-CceEEEEEeeec
Confidence 4599999999999999999997764 889999998644
No 494
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.45 E-value=0.18 Score=53.38 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999988654
No 495
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.44 E-value=0.019 Score=57.65 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
++|+|||||+.|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976544
No 496
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.43 E-value=0.07 Score=53.84 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=27.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.|+|||+|..|+-+|..|.+. .+|+++.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~ 38 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG 38 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC
Confidence 699999999999999999987 788888776
No 497
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.41 E-value=0.16 Score=53.32 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEccCCCC-CCchhhhc
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIGAKP-TVSPFERV 316 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~aD-~vi~a~G~~p-~~~~~~~~ 316 (489)
.|+++++ ++.++++..+ +++|.+|... +|+ ++.++ .||+|+|--. |.+++++.
T Consensus 187 ~gv~i~~-~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 187 PNARLRL-NTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred CCCEEEe-CCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence 4899999 9999998754 6778777653 343 57886 6888887654 43444443
No 498
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.26 E-value=0.23 Score=52.71 Aligned_cols=33 Identities=39% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
...|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 346999999999999999999999999999876
No 499
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.23 E-value=0.016 Score=61.09 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-c---EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-S---TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~---~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.++....++.|++++. ++.|++|..+ ++++++|++.++ + .+.++.||+|.|..-...+|..+|+-
T Consensus 198 ~~l~~a~~r~nl~i~~-~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQT-RAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHhhhhccCCCeEEEe-CCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 3444545567899999 9999999864 567888877543 2 35899999999975544667666663
No 500
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=95.22 E-value=0.043 Score=44.47 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=42.8
Q ss_pred EEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCCh--hhhcCCCcHHHHHHHHH
Q 011267 425 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR 480 (489)
Q Consensus 425 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~ 480 (489)
+.++.++ +++|+|+++++.++.++... ..++.++.+++. ..+..+||+.|+++.|+
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 5565554 59999999888788876655 456788888872 33588999999999886
Done!