BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011268
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 117 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 176 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 234
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 235 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 354
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255
Query: 355 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 464
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 316 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 7/257 (2%)
Query: 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY 281
++AG + + L V + G GQLGHGD DRP+P ++ L+ +V + G +
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADH 79
Query: 282 MLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALD 340
+A + +G+ VYS+G G LGHG D P I+ GI + +++ GD H +A+
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVT 137
Query: 341 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 400
G V +WG+ G LG GD D +P+ + + + V A T + + G +YG+
Sbjct: 138 MEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 401 GWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 460
GW +G+LG DR +D+++ R+ S +S ++ G HT+ V+ G L+ +G ++
Sbjct: 198 GWGRYGNLGLGDR--TDRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKY 254
Query: 461 AQLGHDTLRGCLEPTEI 477
QLGH L L P ++
Sbjct: 255 GQLGHGDLEDHLIPHKL 271
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 116 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 174
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 183
Query: 175 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 233
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 184 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 241
Query: 234 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 293
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 242 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGWRHTMALTSDGKLYG 300
Query: 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 353
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 301 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 358
Query: 354 GALGHGDEIDKTLPEPLSSL 373
G LG G+ +D+ P+ + +L
Sbjct: 359 GQLGIGESVDRNFPKIIEAL 378
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 117 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 236
Query: 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 235
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 353
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 323
G G+N LG GE D P+ I+ G
Sbjct: 354 GRGTNGQLGIGESVDRNFPKIIEALSVDG 382
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 107 VETSAGNQMQ-ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 164
V ++ G +M + G HT+ +S S ++++ G S G LGHG + ++ S +
Sbjct: 219 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNS 277
Query: 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQ 221
+ Q+S H + G+++ G N G + D P+ + R + K V Q
Sbjct: 278 FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---Q 333
Query: 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 274
V+ G T +T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 334 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 386
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 117 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 176 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 234
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 235 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 354
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 355 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 464
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 7/241 (2%)
Query: 238 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 296
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 83
Query: 297 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 356
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 84 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 141
Query: 357 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 416
G GD D +P+ + + + V A T + + G +YG+GW +G+LG DR +
Sbjct: 142 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--T 199
Query: 417 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTE 476
D+++ P + S +S ++ G HT+ V+ G L+ +G ++ QLGH L L P +
Sbjct: 200 DRLV-PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 258
Query: 477 I 477
+
Sbjct: 259 L 259
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 116 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 174
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 175 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 233
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 234 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 293
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGWRHTMALTSDGKLYG 288
Query: 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 353
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 354 GALGHGDEIDKTLPEPLSSL 373
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 326 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 385
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 386 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 444
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 66 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 445 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 477
VT G + +G N+ QLG L P +I
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 155
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 117 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 235
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGWRHTMALTSD 283
Query: 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 323
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 107 VETSAGNQMQ-ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 164
V ++ G +M + G HT+ +S S ++++ G S G LGHG + ++ S +
Sbjct: 207 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNS 265
Query: 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQ 221
+ Q+S H + G+++ G N G + D P+ + R + K V Q
Sbjct: 266 FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---Q 321
Query: 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 274
V+ G T +T R +V G T+GQLG G+++DR PK I L G+ Q
Sbjct: 322 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQ 374
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 117 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 67
Query: 176 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 234
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T+
Sbjct: 68 TVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTM 126
Query: 235 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 127 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 185
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 354
G G LG G++ D L P + + G + V+ G H +++ SG +YT+G G
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 243
Query: 355 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 244 QLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 464
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 304 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 7/241 (2%)
Query: 238 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 296
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G+ VYS+G
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGMEVYSWGW 83
Query: 297 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 356
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 84 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL 141
Query: 357 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 416
G GD D +P+ + + + V A T + + G +YG+GW +G+LG DR +
Sbjct: 142 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--T 199
Query: 417 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTE 476
D+++ R+ S +S ++ G HT+ V+ G L+ +G ++ QLGH L L P +
Sbjct: 200 DRLVPERVT-STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 258
Query: 477 I 477
+
Sbjct: 259 L 259
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 8/260 (3%)
Query: 116 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 174
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 113 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKMVAAGAE 171
Query: 175 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 233
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 172 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKMSMVACGWRHTISVS 229
Query: 234 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 293
G ++T G + +GQLGHGD D P + L + QI+ G + +A+T +G +Y
Sbjct: 230 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN-SFISQISGGFRHTMALTSDGKLYG 288
Query: 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 353
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 289 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 346
Query: 354 GALGHGDEIDKTLPEPLSSL 373
G LG G+ +D+ P+ + +L
Sbjct: 347 GQLGIGESVDRNFPKIIEAL 366
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 326 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 385
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 386 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 444
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 66 DHTVAYSQSGMEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 122
Query: 445 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 477
VT G + +G N+ QLG L P +I
Sbjct: 123 AVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 155
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 6/209 (2%)
Query: 117 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
+ G HT ++ + ++ G G LG G T + V R+ + V+ H
Sbjct: 166 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKMSMVACGWRH 224
Query: 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 235
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 225 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 341
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 323
G G+N LG GE D P+ I+ G
Sbjct: 342 GRGTNGQLGIGESVDRNFPKIIEALSVDG 370
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 107 VETSAGNQMQ-ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 164
V ++ G +M + G HT+ +S S ++++ G S G LGHG + ++ S +
Sbjct: 207 VTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNS 265
Query: 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQ 221
+ Q+S H + G+++ G N G + D P+ + R + K V Q
Sbjct: 266 FISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---Q 321
Query: 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 266
V+ G T +T R +V G T+GQLG G+++DR PK I L
Sbjct: 322 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 172/350 (49%), Gaps = 10/350 (2%)
Query: 117 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
I+ G H++ L+S V S G G LGHG + S T+++ +V V+ +H
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 69
Query: 176 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 234
QSG +V++ G GH +++ +F P ++AL G+ KQ+ G + +T
Sbjct: 70 TVAYSQSGXEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTX 128
Query: 235 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G V + G N +GQLG GDT D P+ I E + + +AAG + AVT +G +Y +
Sbjct: 129 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 354
G G LG G++ D L P + + G V+ G H +++ SG +YT+G G
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKXSXVACGWRHTISVSYSGALYTYGWSKYG 245
Query: 355 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414
LGHGD D +P L +L + Q+ R T L G +YG+GW FG +G +
Sbjct: 246 QLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL 305
Query: 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 464
++ R D + V Q+S G HT+ VT+R +F +G QLG
Sbjct: 306 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%)
Query: 238 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VYSFGS 296
V + G GQLGHGD DRP+P ++ L+ +V + G + +A + +G VYS+G
Sbjct: 27 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGH-QIVSVTCGADHTVAYSQSGXEVYSWGW 85
Query: 297 GSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGAL 356
G LGHG D P I+ GI + +++ GD H +A+ G V +WG+ G L
Sbjct: 86 GDFGRLGHGNSSDLFTPLPIKALH--GIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQL 143
Query: 357 GHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVS 416
G GD D +P+ + + + V A T + + G +YG+GW +G+LG DR +
Sbjct: 144 GLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--T 201
Query: 417 DKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTE 476
D+++ R+ S S ++ G HT+ V+ G L+ +G ++ QLGH L L P +
Sbjct: 202 DRLVPERVT-STGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 260
Query: 477 I 477
+
Sbjct: 261 L 261
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 6/194 (3%)
Query: 272 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 331
V+ I+AG S+ +A+ +V S+G G + LGHG+ D P + G +V V+
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSAL--DGHQIVSVTC 65
Query: 332 GDEHVVALDSSGY-VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFV 390
G +H VA SG VY+WG G G LGHG+ D P P+ +L Q+
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 125
Query: 391 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 450
+ G V +G G LG D ++ L P+ + + + ++ G HT VT+ G
Sbjct: 126 VTXEGEVQSWGRNQNGQLGLGD---TEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDG 182
Query: 451 RLFGFGDNERAQLG 464
L+G+G LG
Sbjct: 183 DLYGWGWGRYGNLG 196
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 8/260 (3%)
Query: 116 QITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 174
QI G H L ++ V S G + G LG G +T + +I + V+A
Sbjct: 115 QIACGDSHCLAVTXEGEVQSWGRNQNGQLGLG-DTEDSLVPQKIQAFEGIRIKXVAAGAE 173
Query: 175 HAAFVLQSGQVFTCGDNSSFCCGHRD-TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT 233
H A V + G ++ G G D T+R + P V + G V G T ++
Sbjct: 174 HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVTSTGGEKXSXVACGWRHTISVS 231
Query: 234 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 293
G ++T G + +GQLGHGD D P + L + QI+ G + A+T +G +Y
Sbjct: 232 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS-FISQISGGARHTXALTSDGKLYG 290
Query: 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYC 353
+G +G G D+ P +Q VV+VS G H +A+ V+ WG+G
Sbjct: 291 WGWNKFGQVGVGNNLDQCSP--VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN 348
Query: 354 GALGHGDEIDKTLPEPLSSL 373
G LG G+ +D+ P+ + +L
Sbjct: 349 GQLGIGESVDRNFPKIIEAL 368
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 326 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK 385
V+ +SAG H VAL S V +WG+G G LGHGD D+ P LS+L H V V
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 67
Query: 386 RKTFVLVDTG-SVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTV 444
T +G VY +GW FG LG G S + P + +L + QI+ G H +
Sbjct: 68 DHTVAYSQSGXEVYSWGWGDFGRLG---HGNSSDLFTPLPIKALHGIRIKQIACGDSHCL 124
Query: 445 VVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEI 477
VT G + +G N+ QLG L P +I
Sbjct: 125 AVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKI 157
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 6/209 (2%)
Query: 117 ITTGRYHTLLIS-NSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
+ G HT ++ + ++ G G LG G T + V R+ V+ H
Sbjct: 168 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP-ERVTSTGGEKXSXVACGWRH 226
Query: 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 235
V SG ++T G + GH D + P +EAL Q++ G T LT
Sbjct: 227 TISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFISQISGGARHTXALTSD 285
Query: 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIA-PLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
G ++ G N GQ+G G+ LD+ +P + P ++ VVQ++ G + LAVT V+++
Sbjct: 286 GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ--KVVQVSCGWRHTLAVTERNNVFAW 343
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKG 323
G G+N LG GE D P+ I+ G
Sbjct: 344 GRGTNGQLGIGESVDRNFPKIIEALSVDG 372
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 106 IVETSAGNQMQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA 164
+ T + G HT+ +S S ++++ G S G LGHG + ++ S +
Sbjct: 209 VTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPH-KLEALSNS 267
Query: 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG---HRDTNRPIFRPRLVEALKGVPCKQ 221
+ Q+S H + G+++ G N G + D P+ + R + K V Q
Sbjct: 268 FISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPV-QVRFPDDQKVV---Q 323
Query: 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 266
V+ G T +T R +V G T+GQLG G+++DR PK I L
Sbjct: 324 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 164/359 (45%), Gaps = 8/359 (2%)
Query: 118 TTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAA 177
++GR + + +++ G + G LG G E + T + VQ+ E
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLG-GIEGAKVKVPTPCEALATLRPVQLIGGEQTLF 66
Query: 178 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIR 235
V G+++ G + G T + P L+E+++ V K+V +G L+
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFG 295
G V++ G G+LGHG+ P+ I L + VV +AAG ++ VT G +Y++G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLYTWG 184
Query: 296 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGA 355
G LGH + D+L+P+ ++ + + + +GD + L V++WG G G
Sbjct: 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 356 LGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGV 415
LG G +P + SL V+V + + L +G+VY +G + LG G
Sbjct: 245 LGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGH---GS 301
Query: 416 SDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEP 474
D V RPR + L+ V I+TG H V T+ G ++ +GDN+ QLG T P
Sbjct: 302 DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRP 360
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 139/281 (49%), Gaps = 9/281 (3%)
Query: 167 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL 226
V V++ H + G+V++ G+ GH + + P RPR++E+L+G+ V AG
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGG 168
Query: 227 NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLA 284
+ +T G ++T G +G+LGH D+ D+ PK + L+ VV IA +G + L
Sbjct: 169 AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH-RVVDIACGSGDAQTLC 227
Query: 285 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 344
+T + V+S+G G LG G P I + G+ VV+V G + VAL SG
Sbjct: 228 LTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGA 285
Query: 345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 404
VYTWGKG LGHG + P + L+ + + + G VY +G
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345
Query: 405 FGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVV 445
G LG G ++ + RPR++ +L+ V++++ G HT+
Sbjct: 346 EGQLG---DGTTNAIQRPRLVAALQGKKVNRVACGSAHTLA 383
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 128/257 (49%), Gaps = 16/257 (6%)
Query: 226 LNFTGFLTIRGHVHTCGSNTHGQLG--HGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYM 282
L F G TI G H N GQLG G + PTP +++A L V Q+ G +
Sbjct: 14 LYFQGSGTIYGWGH----NHRGQLGGIEGAKVKVPTPCEALATLRPV----QLIGGEQTL 65
Query: 283 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 342
AVT +G +Y+ G G+ LG G P +++ + I V V++G +H +AL S
Sbjct: 66 FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 343 GYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGW 402
G VY+WG+ G LGHG+ P + SL+ V V A + + G +Y +G
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 403 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTDRGRLFGFGDNER 460
+G LG D S+ L+P+++++L+ H V I+ +G T+ +TD ++ +GD +
Sbjct: 186 GRYGRLGHSD---SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY 242
Query: 461 AQLGHDTLRGCLEPTEI 477
+LG GC P +I
Sbjct: 243 GKLGRGGSDGCKVPMKI 259
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 114/285 (40%), Gaps = 60/285 (21%)
Query: 113 NQMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA 171
++ + +G H L L S V+S G + G LGHG + C I VV V+A
Sbjct: 108 KKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG-NRSPCDRPRVIESLRGIEVVDVAA 166
Query: 172 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG--------------- 216
H+A V +G ++T G GH D+ + +P+LVEAL+G
Sbjct: 167 GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL-KPKLVEALQGHRVVDIACGSGDAQT 225
Query: 217 -----------------------------VPCK----------QVTAGLNFTGFLTIRGH 237
VP K +V G F+ LT G
Sbjct: 226 LCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGA 285
Query: 238 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSG 297
V+T G + +LGHG P+ + L+ V+ IA G + + T +G VY++G
Sbjct: 286 VYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGK-KVIAIATGSLHCVCCTEDGEVYTWGDN 344
Query: 298 SNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 342
LG G + +PR + + K ++ RV+ G H +A +S
Sbjct: 345 DEGQLGDGTTNAIQRPRLVAALQGKKVN--RVACGSAHTLAWSTS 387
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 159/381 (41%), Gaps = 49/381 (12%)
Query: 132 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 191
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 29 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 86
Query: 192 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 243
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 87 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 244 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 298
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 138 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 192
Query: 299 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 344
LG G Q E L P+ + R VR G A+ G+
Sbjct: 193 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252
Query: 345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGW 402
VY +G LG +P+ L+S K+ V + T + G Y G
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 312
Query: 403 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 462
+G LG + G +K + P ++ L A VS ++ G VT GR+F +G Q
Sbjct: 313 AEYGRLGLGE-GAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368
Query: 463 LGHDTLRGCLEPTEIFIQEME 483
LG P E+ +++E
Sbjct: 369 LGTGQDEDAWSPVEMMGKQLE 389
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 26/263 (9%)
Query: 233 TIRGHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 291
T G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G V
Sbjct: 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQV 80
Query: 292 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 349
YSFG LG + E+ P ++ + VV+VSAGD H AL G V+ WG
Sbjct: 81 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFLWG 136
Query: 350 --KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 407
+ G +G + + K++ P+ V+V + +L G +Y G G
Sbjct: 137 SFRDNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 195
Query: 408 LG-----FPDRGVS---DKVLRPR--ILDSL--RAHHVSQIS-TGLYHTVVVTDRGRLFG 454
LG F +RG +++L P+ +L S R H Q + G Y T ++ G ++G
Sbjct: 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 255
Query: 455 FGDNERAQLGHDTLRGCLEPTEI 477
FG + QLG C P +
Sbjct: 256 FGLSNYHQLGTPGTESCFIPQNL 278
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 147/362 (40%), Gaps = 40/362 (11%)
Query: 115 MQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE 173
+Q G HT+ +S S V+S G + G LG + + VVQVSA +
Sbjct: 62 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQEKVVQVSAGD 120
Query: 174 NHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGVPCKQVTAGL 226
+H A + G+VF G SF RD N P+ + + V+ VP +V +G
Sbjct: 121 SHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN 173
Query: 227 NFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLEEVGSVVQIA 276
+ LT G ++T G GQLG L+R L+ GS +
Sbjct: 174 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 233
Query: 277 -----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 331
G + A++ G VY FG + LG P+ + +F+ V S
Sbjct: 234 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 293
Query: 332 GDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKSHLAVQVCARKRKTFV 390
G H V +DS G Y+ G+ G LG G+ +K++P +S L + +V A +
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYA 351
Query: 391 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRIL--DSLRAHHVSQISTGLYHTV-VVT 447
+ G V+ +G LG G + P + L V +S+G HTV +V
Sbjct: 352 VTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
Query: 448 DR 449
D+
Sbjct: 409 DK 410
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 369 PLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSL 428
P ++ V+V R T + G V G G LG + + K +P ++
Sbjct: 5 PADAIPKSKKVKVSHRSHST----EPGLVLTLGQGDVGQLGLGENVMERK--KPALVSI- 57
Query: 429 RAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDT-LRGC-LEPTEIFIQE 481
V Q G HTV ++ G+++ FG N+ LG DT + G + P ++ +QE
Sbjct: 58 -PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE 111
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 159/381 (41%), Gaps = 49/381 (12%)
Query: 132 VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 191
V + G G LG G + ++ P VVQ A H + +SGQV++ G N
Sbjct: 18 VLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 192 SSFCCGHRDTNRPIFRPRLVEALKGVPCK--------QVTAGLNFTGFLTIRGHVHTCGS 243
G RDT+ VE + VP K QV+AG + T LT G V GS
Sbjct: 76 DEGALG-RDTS--------VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Query: 244 --NTHGQLGHGDTLDRPTPKSIAPLE---EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 298
+ +G +G L P KS+ P++ +V VV++A+G +++ +T +G +Y+ G G
Sbjct: 127 FRDNNGVIG----LLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLTADGDLYTLGCGE 181
Query: 299 NFCLGH---------GEQHDE--LQPRAIQTFRRKGIHVVRVS---AGDEHVVALDSSGY 344
LG G Q E L P+ + R VR G A+ G+
Sbjct: 182 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 241
Query: 345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGW 402
VY +G LG +P+ L+S K+ V + T + G Y G
Sbjct: 242 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 301
Query: 403 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 462
+G LG + G +K + P ++ L A VS ++ G VT GR+F +G Q
Sbjct: 302 AEYGRLGLGE-GAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 357
Query: 463 LGHDTLRGCLEPTEIFIQEME 483
LG P E+ +++E
Sbjct: 358 LGTGQDEDAWSPVEMMGKQLE 378
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 119/263 (45%), Gaps = 26/263 (9%)
Query: 233 TIRGHVHTCGSNTHGQLGHGDT-LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 291
T G V T G GQLG G+ ++R P ++ E+V VQ AG + + ++ +G V
Sbjct: 13 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDV---VQAEAGGMHTVCLSKSGQV 69
Query: 292 YSFGSGSNFCLGHGE--QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 349
YSFG LG + E+ P ++ + VV+VSAGD H AL G V+ WG
Sbjct: 70 YSFGCNDEGALGRDTSVEGSEMVPGKVELQEK----VVQVSAGDSHTAALTDDGRVFLWG 125
Query: 350 --KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 407
+ G +G + + K++ P+ V+V + +L G +Y G G
Sbjct: 126 SFRDNNGVIGLLEPMKKSMV-PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 184
Query: 408 LG-----FPDRGVS---DKVLRPR--ILDSL--RAHHVSQIS-TGLYHTVVVTDRGRLFG 454
LG F +RG +++L P+ +L S R H Q + G Y T ++ G ++G
Sbjct: 185 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 244
Query: 455 FGDNERAQLGHDTLRGCLEPTEI 477
FG + QLG C P +
Sbjct: 245 FGLSNYHQLGTPGTESCFIPQNL 267
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 147/362 (40%), Gaps = 40/362 (11%)
Query: 115 MQITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE 173
+Q G HT+ +S S V+S G + G LG + + VVQVSA +
Sbjct: 51 VQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR-DTSVEGSEMVPGKVELQEKVVQVSAGD 109
Query: 174 NHAAFVLQSGQVFTCGDNSSFCCGHRDTN------RPIFRPRL-VEALKGVPCKQVTAGL 226
+H A + G+VF G SF RD N P+ + + V+ VP +V +G
Sbjct: 110 SHTAALTDDGRVFLWG---SF----RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN 162
Query: 227 NFTGFLTIRGHVHTCGSNTHGQLGH----------GDTLDRPTPKSIAPLEEVGSVVQIA 276
+ LT G ++T G GQLG L+R L+ GS +
Sbjct: 163 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVR 222
Query: 277 -----AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 331
G + A++ G VY FG + LG P+ + +F+ V S
Sbjct: 223 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSG 282
Query: 332 GDEHVVALDSSGYVYTWGKGYCGALGHGDEI-DKTLPEPLSSLKSHLAVQVCARKRKTFV 390
G H V +DS G Y+ G+ G LG G+ +K++P +S L + +V A +
Sbjct: 283 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYA 340
Query: 391 LVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRIL--DSLRAHHVSQISTGLYHTV-VVT 447
+ G V+ +G LG G + P + L V +S+G HTV +V
Sbjct: 341 VTKDGRVFAWGMGTNYQLG---TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 397
Query: 448 DR 449
D+
Sbjct: 398 DK 399
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 106/247 (42%), Gaps = 19/247 (7%)
Query: 233 TIRGHVHTCGSNTHGQLGHG-DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVV 291
T+ G+V CG+ GQLG G D L+R K ++P+ + V I+AG + L +T +G +
Sbjct: 40 TVLGNVLVCGNGDVGQLGLGEDILER---KRLSPVAGIPDAVDISAGGMHNLVLTKSGDI 96
Query: 292 YSFGSGSNFCLGHGEQHD--ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWG 349
YSFG LG D E +P I + + +SAGD H L G V+ WG
Sbjct: 97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGK----ALCISAGDSHSACLLEDGRVFAWG 152
Query: 350 KGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLG 409
G ID P+ ++ + + + +L G V+ G G LG
Sbjct: 153 SFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212
Query: 410 -FPDRGVSDK-------VLRPRILDSLRAHHVSQISTGLYHTVVVTDRGR-LFGFGDNER 460
+R +S + +LRP L RA I Y T + + + ++ G N
Sbjct: 213 RLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNF 272
Query: 461 AQLGHDT 467
QL H+T
Sbjct: 273 KQLAHET 279
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 19/237 (8%)
Query: 117 ITTGRYHTLLISNS-SVFSCGSSLCGVLGHGPETT----------QCVSFTRINFPSAAH 165
I +G H ++++ + VF+ G + G LG E + + T++ A
Sbjct: 184 IASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP 243
Query: 166 VVQVSASENHAAFVLQSGQ--VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT 223
+ A+ N+ F+ +S ++ G N+ H + + LK + + +
Sbjct: 244 FEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDI--RHIA 300
Query: 224 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYM 282
G + T LT G +G+LG GD D P + L E +V + G
Sbjct: 301 GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE--KIVSVGCGEVCS 358
Query: 283 LAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 339
AVT +G +YS+GSG N LG G+ DEL+P + + +G H++ S G +H + L
Sbjct: 359 YAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 142/362 (39%), Gaps = 34/362 (9%)
Query: 131 SVFSCGSSLCGVLGHGPETTQCVSFTRI-NFPSAAHVVQVSASENHAAFVLQSGQVFTCG 189
+V CG+ G LG G + + + + P A V +SA H + +SG +++ G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDA---VDISAGGMHNLVLTKSGDIYSFG 100
Query: 190 DNSSFCCGHRDTNR--PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NT 245
N G RDT+ +P L++ C ++AG + + L G V GS ++
Sbjct: 101 CNDEGALG-RDTSEDGSESKPDLIDLPGKALC--ISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 246 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH- 304
HG +G ++ TP L E IA+G +++ +T G V++ G LG
Sbjct: 158 HGNMGLTIDGNKRTP---IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRL 214
Query: 305 ------GE----QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 354
GE + D L+P + R K + + + + S W G
Sbjct: 215 SERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT---NYCTFMRESQTQVIWATGLNN 271
Query: 355 ALGHGDEIDKTLPEPLSSLKSHLA--VQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 412
E K L+ +K+ L + + T +L G +G LG D
Sbjct: 272 FKQLAHET-KGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD 330
Query: 413 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCL 472
V D V +P I+ L VS + G + VT G+L+ +G QLG L
Sbjct: 331 --VKDVVEKPTIVKKLTEKIVS-VGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDEL 387
Query: 473 EP 474
EP
Sbjct: 388 EP 389
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 35/211 (16%)
Query: 285 VTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI-HVVRVSAGDEHVVALDSSG 343
V GNG V G G + + L P A GI V +SAG H + L SG
Sbjct: 47 VCGNGDVGQLGLGEDIL-----ERKRLSPVA-------GIPDAVDISAGGMHNLVLTKSG 94
Query: 344 YVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 403
+Y++G GALG D + +P A+ + A + L++ G V F W
Sbjct: 95 DIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRV--FAWG 152
Query: 404 GF----GSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 459
F G++G G + +D + I++G H V++T G++F G E
Sbjct: 153 SFRDSHGNMGLTIDGN-----KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207
Query: 460 RAQLGHDTLRGC-----------LEPTEIFI 479
+ QLG + R L PT++ I
Sbjct: 208 QGQLGRLSERSISGEGRRGKRDLLRPTQLII 238
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 24/282 (8%)
Query: 101 EHSSDIVETSAGNQMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN 159
E D+++ G + I+ G H+ L+ + VF+ GS G+ T T I+
Sbjct: 117 ESKPDLIDL-PGKALCISAGDSHSACLLEDGRVFAWGS-FRDSHGNMGLTIDGNKRTPID 174
Query: 160 FPSAAHVVQVSASENHAAFVLQSGQVFTCG----------DNSSFCCGHRDTNRPIFRPR 209
+++ +H + +G+VFT G S R R + RP
Sbjct: 175 LMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPT 234
Query: 210 LVEALKGVPCKQVTAGLNFTGFL--TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 267
+ + P + + A N+ F+ + + G N QL H + ++ P++
Sbjct: 235 QLIITRAKPFEAIWA-TNYCTFMRESQTQVIWATGLNNFKQLAH---ETKGKEFALTPIK 290
Query: 268 -EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIH 325
E+ + IA G + + +T + G LG G+ D ++ P ++ K
Sbjct: 291 TELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEK--- 347
Query: 326 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLP 367
+V V G+ A+ G +Y+WG G LG GD D+ P
Sbjct: 348 IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEP 389
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 140/345 (40%), Gaps = 52/345 (15%)
Query: 164 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFC---CGHRDTNRPIFRPRLVEALKGVPCK 220
+H++ H +Q +F C S C G N+ + RPRL L K
Sbjct: 10 SHIINAQEDYKHMYLSVQPLDIF-CWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAK 68
Query: 221 QVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD---------------------- 256
++ G T L +V + G N G LG DT +
Sbjct: 69 IISFAVGGMHTLALDEESNVWSWGCNDVGALGR-DTSNAKEQLKDMDADDSSDDEDGDLN 127
Query: 257 --RPTP-----KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS--GSNFCLGHGEQ 307
TP +S PL E VVQ+AA + A+ NG VY++G+ + LG +
Sbjct: 128 ELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQD 187
Query: 308 HDELQ--PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-- 363
++Q P + TF + ++V+++ G +H++ LD G V+ WG G LG
Sbjct: 188 KIKIQKTPWKVPTFSK--YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245
Query: 364 -KTL-PEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVL- 420
KTL P P H+ + + + F L + +G FG G + V D L
Sbjct: 246 LKTLDPRPFGL--RHVKY-IASGENHCFALTKDNKLVSWGLNQFGQCGVSE-DVEDGALV 301
Query: 421 -RPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 464
+P+ L + I+ G +H+++++ G L+ G + ++G
Sbjct: 302 TKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVG 346
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 126 LISNSSVFSCGSSLC--GVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQ 181
L SN V++ G+ C G+LG + + + T P S ++VQ++ ++H F+ +
Sbjct: 163 LFSNGEVYAWGTFRCNEGILGFYQDKIK-IQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 182 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTAGLNFTGFLTIRGH 237
G VF G+ G + R FR + ++ L+ V K + +G N LT
Sbjct: 222 EGMVFAWGNGQQNQLGRKVMER--FRLKTLDPRPFGLRHV--KYIASGENHCFALTKDNK 277
Query: 238 VHTCGSNTHGQLGHGDTLDR----PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 293
+ + G N GQ G + ++ PK +A + V + IAAG + L ++ +G +YS
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV-VIRSIAAGEHHSLILSQDGDLYS 336
Query: 294 FGSGSNFCLG----------HGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSG 343
G F +G + + H + + + T V+AG H VA+ +G
Sbjct: 337 CGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNG 396
Query: 344 YVYTWGKGYCGALGHGDEIDKT 365
Y+WG G A+G G D T
Sbjct: 397 IAYSWGFGETYAVGLGPFEDDT 418
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 125/302 (41%), Gaps = 33/302 (10%)
Query: 63 QLCALHSIYAGMSRNVQIELLN--RCNGNWKRVLRFLQ---SVEHSSDIVET-SAGNQMQ 116
QL A ++ + N ++ RCN + +L F Q ++ + V T S N +Q
Sbjct: 152 QLAATDNMSCALFSNGEVYAWGTFRCN---EGILGFYQDKIKIQKTPWKVPTFSKYNIVQ 208
Query: 117 ITTGRYHTLLISNSS-VFSCGSSLCGVLGHG-PETTQCVSFTRINFPSAAHVVQVSASEN 174
+ G+ H L + VF+ G+ LG E + + F HV +++ EN
Sbjct: 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIASGEN 267
Query: 175 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRP---IFRPRLVEALKGVPCKQVTAGLNFTGF 231
H + + ++ + G N CG + + +P+ + V + + AG + +
Sbjct: 268 HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLI 327
Query: 232 LTIRGHVHTCGSNTHGQLG--------------HGDTLDRPTPKSIAPLEEVGSVVQIAA 277
L+ G +++CG ++G HG P P L V +AA
Sbjct: 328 LSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK---LNNVPKFKSVAA 384
Query: 278 GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ-PRAIQTFRRKGIHVVRVSAGDEHV 336
G + +AV NG+ YS+G G + +G G D+ + P I+ + +++ V G +
Sbjct: 385 GSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFS 444
Query: 337 VA 338
V+
Sbjct: 445 VS 446
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 90/218 (41%), Gaps = 45/218 (20%)
Query: 291 VYSFGSGSNFCLGHG---EQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 347
++ +G+GS LG G + + +PR R ++ + G H +ALD V++
Sbjct: 31 IFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90
Query: 348 WGKGYCGALGHG------------------------DEIDKT---LPE----PLSSLKSH 376
WG GALG +E++ T +P PL+ + H
Sbjct: 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA--EGH 148
Query: 377 LAVQVCARKRKTFVLVDTGSVYGFGWM--GFGSLGFPDRGVSDKV---LRPRILDSLRAH 431
VQ+ A + L G VY +G G LGF DK+ P + + +
Sbjct: 149 KVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGF----YQDKIKIQKTPWKVPTFSKY 204
Query: 432 HVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLR 469
++ Q++ G H + + + G +F +G+ ++ QLG +
Sbjct: 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVME 242
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 16/206 (7%)
Query: 157 RINFPSAAH---VVQVSASENHAAFVLQSGQVFTCGD---NSSFCCGHRDTNRPIFRPRL 210
R +FP A VVQ++A++N + + +G+V+ G N ++D + P
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWK 197
Query: 211 VEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EV 269
V Q+ G + FL G V G+ QLG ++R K++ P +
Sbjct: 198 VPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRLKTLDPRPFGL 256
Query: 270 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK-----GI 324
V IA+G ++ A+T + + S+G G ++++ A+ T ++ +
Sbjct: 257 RHVKYIASGENHCFALTKDNKLVSWGLNQ---FGQCGVSEDVEDGALVTKPKRLALPDNV 313
Query: 325 HVVRVSAGDEHVVALDSSGYVYTWGK 350
+ ++AG+ H + L G +Y+ G+
Sbjct: 314 VIRSIAAGEHHSLILSQDGDLYSCGR 339
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 117 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQVSASENH 175
I G YH+L + + V + G + G + P+ A V A+
Sbjct: 68 IAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVDAIAAGAW 112
Query: 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ---VTAGLN 227
A++ L+ G+V GD+S T P V AL G + K + G N
Sbjct: 113 ASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN 167
Query: 228 FTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGSVVQIAAG 278
+ G T+ + + G + H L D ++ P E + V IA+G
Sbjct: 168 YFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASG 227
Query: 279 PSYMLAVTGNGVVYSFGS 296
Y LA+ NG V ++GS
Sbjct: 228 EWYSLALK-NGKVIAWGS 244
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 117 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHV-VQVSASENH 175
I G YH+L + + V + G + G + P+ A V A+
Sbjct: 70 IAAGNYHSLALKDGEVIAWGGNEDG---------------QTTVPAEARSGVDAIAAGAW 114
Query: 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG-----VPCKQ---VTAGLN 227
A++ L+ G+V GD+S T P V AL G + K + G N
Sbjct: 115 ASYALKDGKVIAWGDDS-----DGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN 169
Query: 228 FTGFLTIRGHVHTCGSNTHGQLGHGDTL---------DRPTPKSIAPLEEVGSVVQIAAG 278
+ G T+ + + G + H L D ++ P E + V IA+G
Sbjct: 170 YFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAIASG 229
Query: 279 PSYMLAVTGNGVVYSFGS 296
Y LA+ NG V ++GS
Sbjct: 230 EWYSLALK-NGKVIAWGS 246
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 112 GNQMQITTGRYHTLLISNSSVFSCGSSLC-GVLGHGPETTQCVSFTRINFPSAAHVVQVS 170
G MQ+ G + +S+ VF+ G S GV E S T + P+A ++
Sbjct: 285 GPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 344
Query: 171 A-------SENHAA-FVLQSGQVFTCGDNSSF------------CCGHRDTNR 203
A S+NHA F + G VF G +++ G R +NR
Sbjct: 345 ADKQGLYKSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 397
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 112 GNQMQITTGRYHTLLISNSSVFSCGSSLC-GVLGHGPETTQCVSFTRINFPSAAHVVQVS 170
G MQ+ G + +S+ VF+ G S GV E S T + P+A ++
Sbjct: 263 GPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT 322
Query: 171 A-------SENHAA-FVLQSGQVFTCGDNSSF------------CCGHRDTNR 203
A S+NHA F + G VF G +++ G R +NR
Sbjct: 323 ADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,955,242
Number of Sequences: 62578
Number of extensions: 631692
Number of successful extensions: 1831
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1616
Number of HSP's gapped (non-prelim): 62
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)