Query 011268
Match_columns 489
No_of_seqs 544 out of 2135
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.5E-53 9.7E-58 404.0 28.0 351 121-479 58-441 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.8E-47 3.8E-52 365.7 29.4 365 75-448 63-464 (476)
3 KOG1427 Uncharacterized conser 100.0 1.5E-44 3.2E-49 323.7 18.4 328 112-450 56-400 (443)
4 KOG1427 Uncharacterized conser 100.0 7E-43 1.5E-47 312.9 19.6 348 129-489 19-387 (443)
5 KOG1428 Inhibitor of type V ad 100.0 2.5E-29 5.5E-34 260.2 19.8 328 111-466 478-854 (3738)
6 KOG0783 Uncharacterized conser 99.9 1.1E-27 2.3E-32 240.2 14.0 273 177-459 136-417 (1267)
7 KOG0783 Uncharacterized conser 99.9 1.5E-27 3.3E-32 239.1 14.2 302 128-451 140-451 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 4.2E-23 9.2E-28 214.6 23.5 313 112-445 525-891 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 7.6E-12 1.7E-16 86.9 5.2 50 342-391 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 1.3E-11 2.7E-16 85.8 5.4 51 182-232 1-51 (51)
11 KOG0941 E3 ubiquitin protein l 99.2 1.6E-13 3.5E-18 140.5 -9.7 190 207-450 4-197 (850)
12 KOG0941 E3 ubiquitin protein l 99.1 8.1E-13 1.8E-17 135.5 -7.3 183 163-397 13-199 (850)
13 PF13540 RCC1_2: Regulator of 99.1 1E-10 2.2E-15 70.5 4.5 30 433-462 1-30 (30)
14 PF13540 RCC1_2: Regulator of 99.1 1.1E-10 2.4E-15 70.4 4.6 30 219-248 1-30 (30)
15 PF12937 F-box-like: F-box-lik 97.9 2.3E-06 5E-11 57.8 0.4 35 10-46 1-35 (47)
16 PF00646 F-box: F-box domain; 97.3 5E-05 1.1E-09 51.5 -0.7 34 9-44 2-35 (48)
17 smart00256 FBOX A Receptor for 96.9 0.00021 4.5E-09 46.4 -0.1 31 13-45 1-31 (41)
18 PF11725 AvrE: Pathogenicity f 95.4 0.42 9.1E-06 54.8 15.1 246 165-455 490-769 (1774)
19 KOG0274 Cdc4 and related F-box 95.3 4.7 0.0001 42.4 26.5 225 172-465 260-488 (537)
20 KOG3669 Uncharacterized conser 95.0 1.9 4.1E-05 44.1 17.1 107 224-347 190-298 (705)
21 KOG3669 Uncharacterized conser 93.8 4.2 9E-05 41.8 16.4 108 171-294 190-299 (705)
22 PF11725 AvrE: Pathogenicity f 92.0 1.4 3E-05 50.8 11.3 117 263-395 697-815 (1774)
23 KOG0315 G-protein beta subunit 90.8 14 0.00029 34.2 15.1 121 312-459 72-198 (311)
24 KOG2997 F-box protein FBX9 [Ge 90.1 0.063 1.4E-06 50.6 -0.9 39 8-46 105-146 (366)
25 KOG0943 Predicted ubiquitin-pr 89.1 0.043 9.4E-07 59.8 -3.1 130 216-352 373-506 (3015)
26 KOG0646 WD40 repeat protein [G 85.6 43 0.00092 33.7 17.3 153 219-401 84-245 (476)
27 KOG0315 G-protein beta subunit 84.6 34 0.00073 31.7 18.3 61 224-296 134-196 (311)
28 KOG0291 WD40-repeat-containing 84.2 65 0.0014 34.7 27.3 122 165-299 299-424 (893)
29 PHA03098 kelch-like protein; P 83.5 53 0.0012 34.6 16.5 35 8-42 144-179 (534)
30 PF13013 F-box-like_2: F-box-l 82.3 0.42 9.1E-06 38.3 0.0 33 9-43 21-53 (109)
31 PHA02713 hypothetical protein; 81.2 33 0.00072 36.4 13.8 22 171-192 340-361 (557)
32 TIGR01063 gyrA DNA gyrase, A s 77.3 1.3E+02 0.0028 33.7 22.5 221 222-464 542-775 (800)
33 KOG1900 Nuclear pore complex, 77.2 93 0.002 35.8 15.7 202 128-350 97-339 (1311)
34 KOG0943 Predicted ubiquitin-pr 76.6 3.1 6.7E-05 46.3 4.3 81 375-456 373-454 (3015)
35 PLN02153 epithiospecifier prot 76.2 82 0.0018 30.9 20.3 18 280-298 130-147 (341)
36 PF07569 Hira: TUP1-like enhan 76.1 16 0.00034 33.5 8.4 29 270-298 13-41 (219)
37 PF07569 Hira: TUP1-like enhan 74.7 16 0.00034 33.6 8.0 28 216-243 12-39 (219)
38 PF02239 Cytochrom_D1: Cytochr 74.3 98 0.0021 30.9 14.1 123 158-294 21-155 (369)
39 TIGR01063 gyrA DNA gyrase, A s 73.8 1.6E+02 0.0034 33.0 22.7 215 170-404 543-770 (800)
40 KOG4441 Proteins containing BT 73.5 49 0.0011 35.3 12.3 198 122-350 325-530 (571)
41 PRK05560 DNA gyrase subunit A; 72.7 1.7E+02 0.0036 32.8 22.5 217 170-406 545-775 (805)
42 KOG1408 WD40 repeat protein [F 72.0 1.5E+02 0.0032 32.0 14.8 109 110-242 131-247 (1080)
43 KOG0646 WD40 repeat protein [G 70.9 1.2E+02 0.0027 30.6 16.6 68 111-191 81-153 (476)
44 KOG0278 Serine/threonine kinas 69.8 89 0.0019 29.1 11.2 152 204-402 132-286 (334)
45 COG4257 Vgb Streptogramin lyas 69.7 59 0.0013 30.8 10.2 138 279-455 63-205 (353)
46 KOG1900 Nuclear pore complex, 69.7 1E+02 0.0022 35.6 13.7 210 176-402 92-339 (1311)
47 TIGR02658 TTQ_MADH_Hv methylam 68.9 1.3E+02 0.0027 29.9 22.7 79 158-241 32-122 (352)
48 PF04841 Vps16_N: Vps16, N-ter 68.7 1.4E+02 0.003 30.3 21.6 75 157-241 75-152 (410)
49 KOG2120 SCF ubiquitin ligase, 68.5 2.2 4.7E-05 40.6 0.8 42 9-52 97-139 (419)
50 smart00706 TECPR Beta propelle 66.8 15 0.00032 22.5 4.1 24 325-348 9-33 (35)
51 smart00706 TECPR Beta propelle 65.0 13 0.00028 22.7 3.7 25 270-294 8-33 (35)
52 KOG0293 WD40 repeat-containing 64.1 1.1E+02 0.0024 30.6 11.3 71 270-351 396-470 (519)
53 KOG0291 WD40-repeat-containing 64.0 2.2E+02 0.0048 30.9 22.8 108 125-246 313-424 (893)
54 PLN02153 epithiospecifier prot 63.5 1.5E+02 0.0033 29.0 19.2 17 122-138 78-94 (341)
55 KOG0649 WD40 repeat protein [G 62.6 1.3E+02 0.0029 27.9 12.2 80 270-350 63-143 (325)
56 PRK05560 DNA gyrase subunit A; 61.9 2.7E+02 0.0058 31.2 23.0 220 222-464 544-778 (805)
57 TIGR01062 parC_Gneg DNA topois 61.8 2.5E+02 0.0055 30.9 15.9 160 278-465 493-661 (735)
58 COG4257 Vgb Streptogramin lyas 58.9 1.3E+02 0.0029 28.5 10.4 140 121-294 63-205 (353)
59 KOG1240 Protein kinase contain 56.6 3.7E+02 0.0081 31.2 15.0 161 270-455 1049-1222(1431)
60 PF04841 Vps16_N: Vps16, N-ter 56.4 2.3E+02 0.005 28.7 22.1 153 112-294 81-243 (410)
61 cd00200 WD40 WD40 domain, foun 55.8 1.6E+02 0.0034 26.6 32.5 137 175-351 65-207 (289)
62 PHA03098 kelch-like protein; P 50.4 1.5E+02 0.0032 31.2 11.0 18 122-139 335-352 (534)
63 PRK14131 N-acetylneuraminic ac 46.9 2.4E+02 0.0051 28.2 11.3 17 122-138 131-148 (376)
64 cd00200 WD40 WD40 domain, foun 45.6 2.3E+02 0.0049 25.5 28.2 147 165-351 11-165 (289)
65 PHA02713 hypothetical protein; 44.3 2.1E+02 0.0046 30.4 10.9 11 128-138 350-360 (557)
66 KOG4441 Proteins containing BT 43.7 2.1E+02 0.0045 30.6 10.7 22 436-457 509-530 (571)
67 PF06881 Elongin_A: RNA polyme 43.0 20 0.00043 28.8 2.3 32 9-42 3-34 (109)
68 PRK14131 N-acetylneuraminic ac 43.0 3.5E+02 0.0076 26.9 20.4 18 280-297 131-148 (376)
69 PF06739 SBBP: Beta-propeller 42.0 31 0.00068 21.7 2.6 18 334-351 15-32 (38)
70 KOG2111 Uncharacterized conser 41.4 3.4E+02 0.0074 26.3 14.6 26 270-295 95-121 (346)
71 TIGR01062 parC_Gneg DNA topois 39.4 5.7E+02 0.012 28.3 17.4 160 172-357 493-660 (735)
72 PF10168 Nup88: Nuclear pore c 37.5 6E+02 0.013 28.0 19.3 117 124-241 35-176 (717)
73 PF02239 Cytochrom_D1: Cytochr 34.4 4.8E+02 0.01 26.0 16.6 121 107-241 21-155 (369)
74 PF12341 DUF3639: Protein of u 33.8 1E+02 0.0022 17.9 4.0 23 270-292 2-24 (27)
75 PF04762 IKI3: IKI3 family; I 32.7 8E+02 0.017 28.1 21.6 28 216-243 426-455 (928)
76 TIGR03548 mutarot_permut cycli 32.6 4.6E+02 0.01 25.3 15.2 18 227-245 116-133 (323)
77 KOG1034 Transcriptional repres 32.0 1E+02 0.0022 29.9 5.4 57 177-242 323-381 (385)
78 TIGR03548 mutarot_permut cycli 31.2 3.6E+02 0.0078 26.0 9.6 18 122-139 116-133 (323)
79 KOG0293 WD40 repeat-containing 30.7 2.9E+02 0.0063 27.8 8.3 25 219-243 443-469 (519)
80 PF04762 IKI3: IKI3 family; I 29.7 9E+02 0.019 27.7 20.9 28 163-190 426-455 (928)
81 PHA02790 Kelch-like protein; P 29.6 3.9E+02 0.0085 27.7 10.0 16 176-191 356-371 (480)
82 PLN03215 ascorbic acid mannose 29.3 2.5E+02 0.0054 28.1 7.8 35 11-47 5-40 (373)
83 KOG0281 Beta-TrCP (transducin 29.3 15 0.00033 35.5 -0.5 31 10-42 75-109 (499)
84 PF09372 PRANC: PRANC domain; 28.6 31 0.00067 26.9 1.2 25 9-35 71-95 (97)
85 PF06433 Me-amine-dh_H: Methyl 28.6 1.6E+02 0.0034 29.0 6.2 159 167-350 31-212 (342)
86 PF07646 Kelch_2: Kelch motif; 28.2 58 0.0013 21.4 2.4 17 122-138 4-20 (49)
87 PRK13979 DNA topoisomerase IV 28.2 9.6E+02 0.021 27.5 26.9 129 165-303 553-695 (957)
88 TIGR03300 assembly_YfgL outer 27.7 6E+02 0.013 25.0 25.1 57 385-455 320-376 (377)
89 PF13418 Kelch_4: Galactose ox 27.7 62 0.0013 21.1 2.5 17 385-401 3-19 (49)
90 PF03785 Peptidase_C25_C: Pept 27.3 1.2E+02 0.0025 22.9 3.9 42 206-249 7-49 (81)
91 KOG0316 Conserved WD40 repeat- 26.8 5.2E+02 0.011 24.1 13.6 63 114-189 104-171 (307)
92 KOG1034 Transcriptional repres 25.7 6.4E+02 0.014 24.7 9.6 57 338-402 324-382 (385)
93 PF03785 Peptidase_C25_C: Pept 25.0 1.3E+02 0.0028 22.6 3.8 35 162-196 14-49 (81)
94 PF01436 NHL: NHL repeat; Int 24.7 1.3E+02 0.0027 17.2 3.1 17 335-351 5-21 (28)
95 smart00442 FGF Acidic and basi 24.6 4E+02 0.0087 21.9 8.7 65 271-347 3-67 (126)
96 KOG1274 WD40 repeat protein [G 23.0 1.1E+03 0.024 26.5 21.1 239 119-400 13-259 (933)
97 PF00167 FGF: Fibroblast growt 22.8 4.1E+02 0.0089 21.5 7.7 65 165-240 1-65 (122)
98 PLN03215 ascorbic acid mannose 22.6 3.3E+02 0.0071 27.3 7.3 62 218-295 161-225 (373)
99 PF07250 Glyoxal_oxid_N: Glyox 22.3 2.4E+02 0.0052 26.3 6.0 74 117-192 114-190 (243)
100 PF08053 Tna_leader: Tryptopha 22.1 33 0.00072 18.3 0.2 14 31-44 2-15 (24)
101 KOG4341 F-box protein containi 21.8 32 0.00069 34.5 0.1 45 11-57 73-118 (483)
102 KOG1408 WD40 repeat protein [F 21.6 3.5E+02 0.0076 29.4 7.4 30 427-456 214-247 (1080)
103 TIGR02658 TTQ_MADH_Hv methylam 20.9 8.3E+02 0.018 24.2 25.7 259 116-403 42-318 (352)
104 TIGR01061 parC_Gpos DNA topois 20.8 1.2E+03 0.025 25.9 15.7 126 169-302 538-671 (738)
105 KOG0641 WD40 repeat protein [G 20.2 4.4E+02 0.0096 24.1 6.9 22 439-460 90-111 (350)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.5e-53 Score=404.01 Aligned_cols=351 Identities=26% Similarity=0.383 Sum_probs=290.9
Q ss_pred CceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCccc
Q 011268 121 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG 197 (489)
Q Consensus 121 ~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~--~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg 197 (489)
..|..+. .-..||+||+|..+|||.+........|+..++. ....|++++||..|+++|++||+||+||.|..|+||
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 3444455 7788999999999999999888876778887776 445899999999999999999999999999999999
Q ss_pred CCC---------------CCCceeccEEecc----CCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCC-
Q 011268 198 HRD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR- 257 (489)
Q Consensus 198 ~~~---------------~~~~~~~p~~v~~----~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~- 257 (489)
... ......+|..|+. ....+|++++||++++++|+++|+||+||.+..+.++.+...+.
T Consensus 138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~ 217 (476)
T COG5184 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQ 217 (476)
T ss_pred cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccc
Confidence 876 1123567777776 22347999999999999999999999999998888888744432
Q ss_pred -----CCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEec
Q 011268 258 -----PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG 332 (489)
Q Consensus 258 -----~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g 332 (489)
.+|..+. ...|+++++|.+|.++|+++|+||+||+|..||||.........+..+..+. .-..|..|+||
T Consensus 218 k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG 292 (476)
T COG5184 218 KTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACG 292 (476)
T ss_pred cceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccC
Confidence 3444444 2589999999999999999999999999999999998777766665554322 12247889999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCCCCCCCC----CCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCC
Q 011268 333 DEHVVALDSSGYVYTWGKGYCGALGHGDE----IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSL 408 (489)
Q Consensus 333 ~~h~~~lt~~G~vy~wG~n~~gqlg~~~~----~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqL 408 (489)
.+|++||+++|++|+||.|.+||||.+.. .....|.....+.+..|.++++|..|+++|..+|.||+||++..+||
T Consensus 293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql 372 (476)
T COG5184 293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372 (476)
T ss_pred cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence 99999999999999999999999999822 12234666666777789999999999999999999999999999999
Q ss_pred CCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCC-CCCCcccCeEEEc
Q 011268 409 GFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHD-TLRGCLEPTEIFI 479 (489)
Q Consensus 409 G~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~-~~~~~~~p~~v~~ 479 (489)
|..... ...+..|.++... .++.+++||..|+++.+++|+||.||+|++||||.+ ....+..|+.|+-
T Consensus 373 g~~~~~-~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~ 441 (476)
T COG5184 373 GIQEEI-TIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ 441 (476)
T ss_pred cCcccc-eeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence 998744 3445666666543 379999999999999999999999999999999998 4678888888874
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.8e-47 Score=365.66 Aligned_cols=365 Identities=23% Similarity=0.317 Sum_probs=284.4
Q ss_pred ChhhhhhhhhccCCCccccee-eeeecccccceeec---CCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCC--
Q 011268 75 SRNVQIELLNRCNGNWKRVLR-FLQSVEHSSDIVET---SAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGP-- 147 (489)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~-- 147 (489)
.+.....+|.||.+....++- ........|++... ..-.+++++||+.|+++| .||.||+||.|..|+||...
T Consensus 63 ~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~ 142 (476)
T COG5184 63 LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHK 142 (476)
T ss_pred hhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccc
Confidence 444566788888876666542 22222233433322 235689999999999999 99999999999999999765
Q ss_pred -------------CCCeeeeeeEeeCCC----CCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCC-----ce
Q 011268 148 -------------ETTQCVSFTRINFPS----AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR-----PI 205 (489)
Q Consensus 148 -------------~~~~~~~p~~~~~~~----~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~-----~~ 205 (489)
..+...+|..++... ..++++++||..++++++++|+||+||....+.++.+.... ..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~ 222 (476)
T COG5184 143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ 222 (476)
T ss_pred ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceee
Confidence 111234566665522 33899999999999999999999999998888877774331 12
Q ss_pred eccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEE
Q 011268 206 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAV 285 (489)
Q Consensus 206 ~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~l 285 (489)
.+|..+. ...|+++++|.+|.++|+++|+||.||+|..||||.........+..+..+-....|+.|+||.+|+++|
T Consensus 223 ~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al 299 (476)
T COG5184 223 FTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLAL 299 (476)
T ss_pred eeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEE
Confidence 3444443 4579999999999999999999999999999999999888777777776655556789999999999999
Q ss_pred EcCCcEEEecCCCCcccCCCCCCC----CcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCC
Q 011268 286 TGNGVVYSFGSGSNFCLGHGEQHD----ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 361 (489)
Q Consensus 286 t~~G~vy~wG~n~~gqlG~~~~~~----~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~ 361 (489)
+++|+||+||.|.+||||.++... ...|.....+ .+..|..|++|..|+++|..+|.||+||++..+|||...+
T Consensus 300 ~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~ 377 (476)
T COG5184 300 DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEE 377 (476)
T ss_pred cCCCeEEEeccchhcccccCcccccceeeccccccccC--CCceEEEEecCcceEEEEecCceEEEecCCccccccCccc
Confidence 999999999999999999982211 1233333322 3446899999999999999999999999999999999884
Q ss_pred --CCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCc--CCCCCEEEEE
Q 011268 362 --IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQIS 437 (489)
Q Consensus 362 --~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~i~ 437 (489)
.....|+++... .++.+|+||..|+++.+++|+||+||.+.+|+||.++. ...+..|+.+.. ++..+++..-
T Consensus 378 ~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~--~~~~~~pt~i~~~~~~~~~~i~~g 453 (476)
T COG5184 378 ITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK--EADVLVPTLIRQPLLSGHNIILAG 453 (476)
T ss_pred ceeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCch--hhhccccccccccccCCCceEEec
Confidence 444455555433 34999999999999999999999999999999999885 455677888874 6677888888
Q ss_pred ecCCeEEEEEc
Q 011268 438 TGLYHTVVVTD 448 (489)
Q Consensus 438 ~G~~ht~~l~~ 448 (489)
+|...+++...
T Consensus 454 ~~~~~~v~~~~ 464 (476)
T COG5184 454 YGNQFSVIEET 464 (476)
T ss_pred cCcceEEEecc
Confidence 88887777654
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.5e-44 Score=323.69 Aligned_cols=328 Identities=28% Similarity=0.409 Sum_probs=278.9
Q ss_pred CCeEEEEec--CceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEE
Q 011268 112 GNQMQITTG--RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTC 188 (489)
Q Consensus 112 ~~~~~i~~G--~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~w 188 (489)
.+|.-|+.| ..|++++ -+|+.|.||.|..||||+++... ...|+.++-....+|++.+||++|+++||++|++|.+
T Consensus 56 v~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~-~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~af 134 (443)
T KOG1427|consen 56 VNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ-RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAF 134 (443)
T ss_pred ceEEEEecccchhhEEEEecccceeecccCccCccCccchhh-ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEe
Confidence 356667766 5899999 99999999999999999995443 5577777766677999999999999999999999999
Q ss_pred eCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCC------------
Q 011268 189 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD------------ 256 (489)
Q Consensus 189 G~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~------------ 256 (489)
|.|.+||||.++....+..|.++... ...|+.|+||..|++.|+..+.|.++|...|||||+++...
T Consensus 135 GeNK~GQlGlgn~~~~v~s~~~~~~~-~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~ 213 (443)
T KOG1427|consen 135 GENKYGQLGLGNAKNEVESTPLPCVV-SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAY 213 (443)
T ss_pred cccccccccccccccccccCCCcccc-CccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeee
Confidence 99999999999987766666554433 34689999999999999999999999999999999987653
Q ss_pred --CCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC
Q 011268 257 --RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE 334 (489)
Q Consensus 257 --~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~ 334 (489)
.+.|..|..+.. ..|++++||.+|+++++++++||+||.+.+|.||+....+...|+.+..|...+.--.++.||+.
T Consensus 214 e~~pr~~~i~~~dg-vqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t 292 (443)
T KOG1427|consen 214 EAQPRPKAIASLDG-VQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYT 292 (443)
T ss_pred ecCCCccccccccc-eeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecc
Confidence 245556666654 68999999999999999999999999999999999999999999999999888888899999999
Q ss_pred eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCC
Q 011268 335 HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414 (489)
Q Consensus 335 h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~ 414 (489)
.++.+.+-|.+|.||.+.. +-+....|+++..+.+.++..+.|+..|.++ ..|....+||...+|.++-+...
T Consensus 293 ~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~ 365 (443)
T KOG1427|consen 293 GSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNG 365 (443)
T ss_pred cceeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCccc
Confidence 9999999999999998752 2244557888888999999999999999665 56778899998776665444322
Q ss_pred CCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCC
Q 011268 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 450 (489)
Q Consensus 415 ~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G 450 (489)
......|.+++.+.+..|.+|++|..|+++|.++-
T Consensus 366 -Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t 400 (443)
T KOG1427|consen 366 -QKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRT 400 (443)
T ss_pred -cccccCccccchhcceeccceeeccceEEEEEccc
Confidence 33456789999999999999999999999998653
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=7e-43 Score=312.94 Aligned_cols=348 Identities=22% Similarity=0.357 Sum_probs=278.7
Q ss_pred CCcEEEEeCCCCCCcCCCCCCC--eeeeeeEeeCCCCCCEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCc
Q 011268 129 NSSVFSCGSSLCGVLGHGPETT--QCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP 204 (489)
Q Consensus 129 ~g~vy~wG~n~~gqLG~g~~~~--~~~~p~~~~~~~~~~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~ 204 (489)
.|++..+|.-..-+.|..+... ....|.++.-....+|+-|++|. .|+++|+-+|+.|+||.|..||||+++. ..
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~-k~ 97 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM-KQ 97 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccch-hh
Confidence 4567777766666666543333 23355555544455788888774 7999999999999999999999999976 56
Q ss_pred eeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCC-CCceeecCCCCCCCEEEEEeCCCEEE
Q 011268 205 IFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-PTPKSIAPLEEVGSVVQIAAGPSYML 283 (489)
Q Consensus 205 ~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~-~~p~~i~~~~~~~~i~~i~~G~~~~~ 283 (489)
...|+.|+.+...+|++.+||++|+++||++|+||.||.|.+||||.+...+. ..|.++... . .+|+.|+||.+|++
T Consensus 98 ~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~-~-~~v~~v~cga~ftv 175 (443)
T KOG1427|consen 98 RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVV-S-DEVTNVACGADFTV 175 (443)
T ss_pred ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcccc-C-ccceeeccccceEE
Confidence 78999999999999999999999999999999999999999999999976542 222222211 1 58999999999999
Q ss_pred EEEcCCcEEEecCCCCcccCCCCCCCC------------cCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecC
Q 011268 284 AVTGNGVVYSFGSGSNFCLGHGEQHDE------------LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 284 ~lt~~G~vy~wG~n~~gqlG~~~~~~~------------~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n 351 (489)
.|+..+.+.++|.-.|||||++..... ..|++-...+..+.+|++++||.+|+++++++++||+||.+
T Consensus 176 ~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFG 255 (443)
T KOG1427|consen 176 WLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFG 255 (443)
T ss_pred EeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccc
Confidence 999999999999999999999865332 12332222233577999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccceeeccCC--CCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCC
Q 011268 352 YCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR 429 (489)
Q Consensus 352 ~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~ 429 (489)
-||.||+...++...|++++.++ +.--.++.||+..++++.+-|.+|.||.+... .+....|..+..+.
T Consensus 256 GyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~---------ge~~mypkP~~dls 326 (443)
T KOG1427|consen 256 GYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN---------GEDWMYPKPMMDLS 326 (443)
T ss_pred cccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC---------cccccCCCchhhcC
Confidence 99999999999999999988654 44577899999999999999999999976422 34456788888899
Q ss_pred CCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCC--CCCCcccCeEEEccccccccCCC
Q 011268 430 AHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHD--TLRGCLEPTEIFIQEMEEDTGLA 489 (489)
Q Consensus 430 ~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~--~~~~~~~p~~v~~~~~~~~~~ia 489 (489)
..++..+.++..|.++-. |....+||...+|.++-+ -..+...|.+++....+.+..+|
T Consensus 327 gwnl~~~~~~~~h~~v~a-d~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~Va 387 (443)
T KOG1427|consen 327 GWNLRWMDSGSMHHFVGA-DSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVA 387 (443)
T ss_pred CccCCCcCccceeeeecc-cccccccccccccccccCccccccccCccccchhcceecccee
Confidence 999999999999887655 558999999998877554 24566678888877777776654
No 5
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-29 Score=260.19 Aligned_cols=328 Identities=19% Similarity=0.223 Sum_probs=221.9
Q ss_pred CCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEe
Q 011268 111 AGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 189 (489)
Q Consensus 111 ~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG 189 (489)
..+-+.+..++...++- .+|+||..|... ++|+-..... .++++...+|++|+.|-..++++.-.|.=|..-
T Consensus 478 ~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~n-----WmEL~l~~~IVq~SVG~D~~~~~~~A~~G~I~~ 550 (3738)
T KOG1428|consen 478 HPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNN-----WMELCLPEPIVQISVGIDTIMFRSGAGHGWIAS 550 (3738)
T ss_pred CchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCc-----eEEecCCCceEEEEeccchhheeeccCcceEEe
Confidence 33456777788777777 999999999653 4555443332 344555578999999998888887666554443
Q ss_pred CCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCC
Q 011268 190 DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV 269 (489)
Q Consensus 190 ~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~ 269 (489)
..+. .....-++....+..+|++|.+...---.++++|++|..|....- .......+..+.+
T Consensus 551 v~D~---------k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~- 612 (3738)
T KOG1428|consen 551 VDDK---------KRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDN- 612 (3738)
T ss_pred ccCc---------ccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccc-
Confidence 2221 111122222223456788887766556678999999999863221 1112334445543
Q ss_pred CCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCc-CceEeecccc-----------CCccEEEEEecCCeEE
Q 011268 270 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL-QPRAIQTFRR-----------KGIHVVRVSAGDEHVV 337 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~-~p~~i~~~~~-----------~~~~i~~i~~g~~h~~ 337 (489)
.-|.+++.|..|.++++.+|+||+||-|+.+|+|.-...... .|..-..... ....-+-..||.-...
T Consensus 613 ~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~ 692 (3738)
T KOG1428|consen 613 VMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSAR 692 (3738)
T ss_pred ceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccc
Confidence 478999999999999999999999999999999986544332 2221110000 0001111223322111
Q ss_pred EE------cCCCcEEEEecCCCCCCCCCC--------C-------------------CCcccceeec---cCCCCcEEEE
Q 011268 338 AL------DSSGYVYTWGKGYCGALGHGD--------E-------------------IDKTLPEPLS---SLKSHLAVQV 381 (489)
Q Consensus 338 ~l------t~~G~vy~wG~n~~gqlg~~~--------~-------------------~~~~~p~~v~---~~~~~~i~~v 381 (489)
-+ .-.|.+..+|.++.+.+-.|- + ....-|..|. ...+.++.+|
T Consensus 693 GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sV 772 (3738)
T KOG1428|consen 693 GVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSV 772 (3738)
T ss_pred ccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEE
Confidence 11 235778888877766553220 0 0111233332 3346689999
Q ss_pred EeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCC
Q 011268 382 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERA 461 (489)
Q Consensus 382 ~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~G 461 (489)
+||..|+++|.+|++||+||+|.+||||.++ ......|+.+..+.+..+++|++|.+|++++..||.||+||.-.+|
T Consensus 773 SCG~~HtVlL~sd~~VfTFG~~~HGQLG~GD---t~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KG 849 (3738)
T KOG1428|consen 773 SCGNFHTVLLASDRRVFTFGSNCHGQLGVGD---TLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKG 849 (3738)
T ss_pred eccCceEEEEecCCcEEEecCCcccccCcCc---cccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCc
Confidence 9999999999999999999999999999998 4445679999988888999999999999999999999999999999
Q ss_pred CCCCC
Q 011268 462 QLGHD 466 (489)
Q Consensus 462 qLG~~ 466 (489)
|||..
T Consensus 850 QL~RP 854 (3738)
T KOG1428|consen 850 QLARP 854 (3738)
T ss_pred cccCc
Confidence 99974
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=1.1e-27 Score=240.22 Aligned_cols=273 Identities=28% Similarity=0.401 Sum_probs=216.8
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCC--CCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCC
Q 011268 177 AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDT 254 (489)
Q Consensus 177 ~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~--~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~ 254 (489)
.+++.-.+||+||.|....||+++. .....|..|..++ +.-+.+|+.+..|+++|++.|+||++|.+.-|+||.|+.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~-~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNG-KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCC-CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc
Confidence 3456668899999999999999987 4567888888775 455789999999999999999999999999999999999
Q ss_pred CCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCC-CcCceEeeccccCCc-cEEEEEec
Q 011268 255 LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD-ELQPRAIQTFRRKGI-HVVRVSAG 332 (489)
Q Consensus 255 ~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~-~~~p~~i~~~~~~~~-~i~~i~~g 332 (489)
.....|.+++.+.. .+|.+|++...|+++||++|.||+||.|..+|||..+... ...|++|.....++. .|+.|++|
T Consensus 215 q~~~iPkrV~gL~g-h~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIG-HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred cccccccccccccc-cceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 99999999999765 6999999999999999999999999999999999876543 447777776655555 79999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCCCCCCCCCC-cccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCC
Q 011268 333 DEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFP 411 (489)
Q Consensus 333 ~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~-~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~ 411 (489)
..|+++.|+. .||+||.| .||||..+... ...|+.+. .....|+.|+|...-|+++++++.+|++-.-..-.+-..
T Consensus 294 ~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n 370 (1267)
T KOG0783|consen 294 KSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFN 370 (1267)
T ss_pred cceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcEEEEecccceecCcc
Confidence 9999999976 79999997 59999876644 34676553 334579999999999999999999999874332222111
Q ss_pred CCCCCCceeccEEcC----cCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCC
Q 011268 412 DRGVSDKVLRPRILD----SLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 412 ~~~~~~~~~~P~~v~----~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~ 459 (489)
. ...+-.+|. .+...++....+.....+++++-|+||.|-.++
T Consensus 371 ~-----~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 371 V-----DFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred h-----hccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCC
Confidence 1 111112221 111234556666777888999999999998654
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=1.5e-27 Score=239.07 Aligned_cols=302 Identities=25% Similarity=0.284 Sum_probs=223.8
Q ss_pred eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCce
Q 011268 128 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 205 (489)
Q Consensus 128 ~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~--~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~ 205 (489)
.-..||+||.|.+..||+|+..+ ...|+.+.+.... -+.||+.+..|++++++.|+||++|....|.||+++. +..
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde-q~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE-QYN 217 (1267)
T ss_pred CccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc-ccc
Confidence 56889999999999999998776 4467777765433 5788999999999999999999999999999999955 677
Q ss_pred eccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCC-CCCceeecCCC--CCCCEEEEEeCCCEE
Q 011268 206 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPLE--EVGSVVQIAAGPSYM 282 (489)
Q Consensus 206 ~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~-~~~p~~i~~~~--~~~~i~~i~~G~~~~ 282 (489)
..|++|+.+.+.+|.+|++...|+++||++|-||+||.|..+|||..+... ...|.+|.... ....|+.++||..|+
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 899999999999999999999999999999999999999999999876543 34454444322 115799999999999
Q ss_pred EEEEcCCcEEEecCCCCcccCCCCCCCC-cCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCC
Q 011268 283 LAVTGNGVVYSFGSGSNFCLGHGEQHDE-LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 361 (489)
Q Consensus 283 ~~lt~~G~vy~wG~n~~gqlG~~~~~~~-~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~ 361 (489)
++.+.. .||+||.|. ||||..+.... ..|+.+.. ....|..++|...-+++++.++.+|++-+-..-.+-. .
T Consensus 298 Vawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~--n 370 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPF--N 370 (1267)
T ss_pred eeeecc-eEEEecccC-ceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEecccceecCc--c
Confidence 999966 799999976 89998766433 36655533 3457999999999999999999999987532211111 1
Q ss_pred CCcccceeec----cCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEE
Q 011268 362 IDKTLPEPLS----SLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS 437 (489)
Q Consensus 362 ~~~~~p~~v~----~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~ 437 (489)
.....-..|. .+.-..+.+..+....-++||+-|+||.|-++....- .-+...|+.+ .|.+|+
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~-------~c~ftp~r~~------~isdIa 437 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT-------SCKFTPLRIF------EISDIA 437 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee-------eeecccceee------ehhhhh
Confidence 0000011111 0011224455566677789999999999986542110 1112222322 466777
Q ss_pred ecCCeEEEEEcCCC
Q 011268 438 TGLYHTVVVTDRGR 451 (489)
Q Consensus 438 ~G~~ht~~l~~~G~ 451 (489)
--.+..+++++||.
T Consensus 438 ~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 438 WTANSLILCTRDGC 451 (1267)
T ss_pred hccceEEEEecCcc
Confidence 77789999999994
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.2e-23 Score=214.64 Aligned_cols=313 Identities=24% Similarity=0.350 Sum_probs=212.2
Q ss_pred CCeEEEEecCceeEEe---eCCcEEEEeCCC-CCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEE
Q 011268 112 GNQMQITTGRYHTLLI---SNSSVFSCGSSL-CGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT 187 (489)
Q Consensus 112 ~~~~~i~~G~~h~~~l---~~g~vy~wG~n~-~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~ 187 (489)
..|++|+.|-...+++ .+|.++.-|+.. .|+| .+..-....+|+.|.+...-.-+++++|++|.
T Consensus 525 ~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~~~------------Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM 592 (3738)
T KOG1428|consen 525 EPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNGRL------------RRLVPSNRRKIVHVCASGHVYGYVSENGKIFM 592 (3738)
T ss_pred CceEEEEeccchhheeeccCcceEEeccCcccccch------------hhcCCCCcceeEEEeeeeEEEEEEccCCeEEe
Confidence 4599999997666555 788888877432 1111 11111223478888766555668899999999
Q ss_pred EeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCC-Ccee----
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP-TPKS---- 262 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~-~p~~---- 262 (489)
.|.... ........+..+++.-|.+++.|..|.++++++|+||+||-|+.+|+|.-...... .|..
T Consensus 593 ~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~ 663 (3738)
T KOG1428|consen 593 GGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQ 663 (3738)
T ss_pred ecceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccce
Confidence 986441 01123345667888889999999999999999999999999999999975433221 1111
Q ss_pred ---ecCC-----CCCCCEEEEEeCCCEEEEE------EcCCcEEEecCCCCcccCCC--------CC-------------
Q 011268 263 ---IAPL-----EEVGSVVQIAAGPSYMLAV------TGNGVVYSFGSGSNFCLGHG--------EQ------------- 307 (489)
Q Consensus 263 ---i~~~-----~~~~~i~~i~~G~~~~~~l------t~~G~vy~wG~n~~gqlG~~--------~~------------- 307 (489)
+-.+ .-..+-+-..||....--+ .-.|.+-.+|.++.+++--| ..
T Consensus 664 e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~ 743 (3738)
T KOG1428|consen 664 EYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFS 743 (3738)
T ss_pred eecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheec
Confidence 0000 0001222233333221111 12456666666554443211 10
Q ss_pred ------CCCcCceEeec-cccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEE
Q 011268 308 ------HDELQPRAIQT-FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQ 380 (489)
Q Consensus 308 ------~~~~~p~~i~~-~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~ 380 (489)
.....|..+.. -.+...++.+|+||..|+++|.++++||++|.|.+||||.|+......|++|..+.+..+++
T Consensus 744 staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQ 823 (3738)
T KOG1428|consen 744 STAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQ 823 (3738)
T ss_pred ccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEE
Confidence 00112222221 12245689999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCC---CCCEEEEEecCCeEEE
Q 011268 381 VCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR---AHHVSQISTGLYHTVV 445 (489)
Q Consensus 381 v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~---~~~v~~i~~G~~ht~~ 445 (489)
|++|.+||+++..||.||+||....|||+.+..+...--..|.+++.+. +.....|.+.+..+++
T Consensus 824 VaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 824 VAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred EecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 9999999999999999999999999999988654444445688887554 3355566665555443
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.26 E-value=7.6e-12 Score=86.85 Aligned_cols=50 Identities=34% Similarity=0.599 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCC-CCCCCCcccceeeccCCCCcEEEEEeeCCeEEEE
Q 011268 342 SGYVYTWGKGYCGALG-HGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVL 391 (489)
Q Consensus 342 ~G~vy~wG~n~~gqlg-~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~l 391 (489)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888888999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=1.3e-11 Score=85.75 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEE
Q 011268 182 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 232 (489)
Q Consensus 182 ~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~L 232 (489)
||+||+||.|.+||||..........|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999955555788999999999999999999999999987
No 11
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-13 Score=140.51 Aligned_cols=190 Identities=26% Similarity=0.375 Sum_probs=148.3
Q ss_pred ccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEE
Q 011268 207 RPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT 286 (489)
Q Consensus 207 ~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt 286 (489)
.|+.+..+...+|.+++||.+|+++++..|++|+||.|.+||+|.+.......|..++.+.. .+..+|+||.+|+++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g-~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG-VPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcC-CcHHHHhcCCCcchhhh
Confidence 45555555666789999999999999999999999999999999985544445888888866 58999999999999987
Q ss_pred cCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCccc
Q 011268 287 GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTL 366 (489)
Q Consensus 287 ~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~ 366 (489)
. |+++++.+|.++++|....+|+|+........
T Consensus 83 ~-----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 83 S-----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred h-----------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 5 89999999999999999999999977777888
Q ss_pred ceeeccCCCCcEEEEEeeCCeEEEEEc-CCcEEEEEcCCCCCCCCCCCCCCCceeccEEcC---cCCCCCEEEEEecCCe
Q 011268 367 PEPLSSLKSHLAVQVCARKRKTFVLVD-TGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD---SLRAHHVSQISTGLYH 442 (489)
Q Consensus 367 p~~v~~~~~~~i~~v~~G~~ht~~lt~-~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~---~~~~~~v~~i~~G~~h 442 (489)
|..+..+-+..+.+|+||..|+++... -|++|.+|.+..|. +. ......+.+.. ......+..+.+|+..
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~---i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq 189 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GV---IVSLSGEDLLRDHDSEKDHRCSLAFAGGDQ 189 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---ce---eeccchhhhcccccHHHHHHHHHHhcCCCc
Confidence 888888888899999999999998765 49999999877761 00 00001111111 0112245667888888
Q ss_pred EEEEEcCC
Q 011268 443 TVVVTDRG 450 (489)
Q Consensus 443 t~~l~~~G 450 (489)
++.+...+
T Consensus 190 ~~~l~~~~ 197 (850)
T KOG0941|consen 190 TFSLSSKG 197 (850)
T ss_pred eEEEEeec
Confidence 88887664
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.1e-13 Score=135.45 Aligned_cols=183 Identities=30% Similarity=0.404 Sum_probs=141.8
Q ss_pred CCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEe
Q 011268 163 AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCG 242 (489)
Q Consensus 163 ~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG 242 (489)
..+|.|++||.+|+++++..|+++.||.|.+||+|.+....... |.+++.+++.+..+|++|..|+++++.
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~-------- 83 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSS-------- 83 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhh--------
Confidence 34799999999999999999999999999999999995544444 999999999999999999999999985
Q ss_pred CCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccC
Q 011268 243 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 322 (489)
Q Consensus 243 ~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~ 322 (489)
|+++++++|+++++|....+|+|+....+...|..+... .
T Consensus 84 --------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~--i 123 (850)
T KOG0941|consen 84 --------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLEL--I 123 (850)
T ss_pred --------------------------------------chhhcchhccccccCCcccccccccccccccccHHHHHH--H
Confidence 999999999999999999999999777777777766544 3
Q ss_pred CccEEEEEecCCeEEEE-cCCCcEEEEecCCCCCCCCCCCCCcccceeecc---CCCCcEEEEEeeCCeEEEEEcCCcE
Q 011268 323 GIHVVRVSAGDEHVVAL-DSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS---LKSHLAVQVCARKRKTFVLVDTGSV 397 (489)
Q Consensus 323 ~~~i~~i~~g~~h~~~l-t~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~---~~~~~i~~v~~G~~ht~~lt~~G~v 397 (489)
+..+..|+||..|+.+. ..-|++|..|.+..|. +.-.....+.+... .....+..+.+|.+.++.+...++-
T Consensus 124 ~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 124 GSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred hhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---ceeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 45899999999999884 6678999999988761 00011111101110 0111345578888888888655543
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.12 E-value=1e-10 Score=70.55 Aligned_cols=30 Identities=43% Similarity=0.730 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEEcCCCEEEEeCCCCCC
Q 011268 433 VSQISTGLYHTVVVTDRGRLFGFGDNERAQ 462 (489)
Q Consensus 433 v~~i~~G~~ht~~l~~~G~v~~wG~n~~Gq 462 (489)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 14
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.12 E-value=1.1e-10 Score=70.37 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=26.1
Q ss_pred eEEEEccCCeeEEEEcCCcEEEEeCCCCCc
Q 011268 219 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQ 248 (489)
Q Consensus 219 i~~V~~G~~h~~~Lt~~G~vy~wG~n~~Gq 248 (489)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999997
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.93 E-value=2.3e-06 Score=57.84 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=30.1
Q ss_pred cccCChHHHHHHHhcCCCCcccccccccccccccccC
Q 011268 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (489)
Q Consensus 10 ~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~ 46 (489)
+.+||+||+.+||. +|+++|+.+++.|||.|++.+
T Consensus 1 i~~LP~Eil~~If~--~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFS--YLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHT--TS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999 999999999999999888754
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.25 E-value=5e-05 Score=51.51 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=28.4
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccc
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGG 44 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~ 44 (489)
++.+||+|++.+||- +|++.|+++|+.|||.|++
T Consensus 2 ~~~~LP~~il~~Il~--~l~~~~~~~l~~vsk~~~~ 35 (48)
T PF00646_consen 2 PLSDLPDEILQEILS--YLDPKDLLRLSLVSKRWRS 35 (48)
T ss_dssp HHHHS-HHHHHHHHH--TS-HHHHHHHCTT-HHHHH
T ss_pred CHHHCCHHHHHHHHH--HCcHHHHHHHHHHhhHHHH
Confidence 567999999999999 9999999999999997765
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.92 E-value=0.00021 Score=46.43 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=28.9
Q ss_pred CChHHHHHHHhcCCCCccccccccccccccccc
Q 011268 13 LPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (489)
Q Consensus 13 lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~ 45 (489)
||++++..||. +|++.|+.+++.|||.|+..
T Consensus 1 lP~~ll~~I~~--~l~~~d~~~~~~vc~~~~~~ 31 (41)
T smart00256 1 LPDEILEEILS--KLPPKDLLRLRKVSRRWRSL 31 (41)
T ss_pred CCHHHHHHHHH--cCCHHHHHHHHHHHHHHHHH
Confidence 79999999999 99999999999999987764
No 18
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.36 E-value=0.42 Score=54.76 Aligned_cols=246 Identities=15% Similarity=0.200 Sum_probs=125.0
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEe--------------ccC-C--CCC---eEEEEc
Q 011268 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLV--------------EAL-K--GVP---CKQVTA 224 (489)
Q Consensus 165 ~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v--------------~~~-~--~~~---i~~V~~ 224 (489)
..+.|.....+-++.+.+|+||+--..... .. ...-...|... +.+ . +-. .++=..
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~-~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~ 565 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DN-EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQ 565 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CC-CcceEeccccccccccccccccceeeccccCCCCeeeEEEeccC
Confidence 667777777889999999999976443321 11 11111112111 111 0 001 233356
Q ss_pred cCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCC
Q 011268 225 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH 304 (489)
Q Consensus 225 G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~ 304 (489)
|..|+++|+++|.=|.=|+|-.-.|=.....-...|. .+ ..-..+..|..-.++|. +|+|+.|-....+--..
T Consensus 566 GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~-~p-----~~~~~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~~ 638 (1774)
T PF11725_consen 566 GQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPP-AP-----APHEILDLGRAGLVGLQ-DGKIQYWDSTTQCWKDA 638 (1774)
T ss_pred CceeeccccccCCccCCCCcccceeEeeccCCCCCCC-CC-----ChHHhhccccccceeec-cceEeeecCcchhhhhc
Confidence 7888888888888887777755444222211111110 00 11112234566677777 59999996543321111
Q ss_pred CCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecC-CCCCCCCCCCCC------cc---cceeeccCC
Q 011268 305 GEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG-YCGALGHGDEID------KT---LPEPLSSLK 374 (489)
Q Consensus 305 ~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n-~~gqlg~~~~~~------~~---~p~~v~~~~ 374 (489)
.++ .|.++.-|.+....+..+|+|-.---+ .+..+-+++... +. .-..|+.+.
T Consensus 639 ----------~~k-------d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e~G~~l~Gl~ 701 (1774)
T PF11725_consen 639 ----------GVK-------DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVELGDALEGLE 701 (1774)
T ss_pred ----------cCc-------CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCCCCccccCCC
Confidence 110 111222233333333334433332211 111111111111 11 122455666
Q ss_pred CCcEEEEEe-eCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcC--cCCCCCEEEEEecCCe-EEEEEcCC
Q 011268 375 SHLAVQVCA-RKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD--SLRAHHVSQISTGLYH-TVVVTDRG 450 (489)
Q Consensus 375 ~~~i~~v~~-G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~--~~~~~~v~~i~~G~~h-t~~l~~~G 450 (489)
+..|..++. +.+++++|++.|++-+.= ..-.|+.++ .+ ...|+.++.=..| -+|++.+|
T Consensus 702 ~~~i~a~Avv~~~~fvald~qg~lt~h~----------------k~g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt~~G 764 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALDDQGDLTAHQ----------------KPGRPVPLSRPGL-SGEIKDLALDEKQNLYALTSTG 764 (1774)
T ss_pred cCcceeEEEEcCCceEEeccCCcccccc----------------CCCCCccCCCCCC-CcchhheeeccccceeEecCCC
Confidence 666666654 889999999999986521 112244444 33 3478999987765 56799999
Q ss_pred CEEEE
Q 011268 451 RLFGF 455 (489)
Q Consensus 451 ~v~~w 455 (489)
++|.-
T Consensus 765 ~Lf~~ 769 (1774)
T PF11725_consen 765 ELFRL 769 (1774)
T ss_pred ceeec
Confidence 99953
No 19
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.26 E-value=4.7 Score=42.36 Aligned_cols=225 Identities=11% Similarity=0.058 Sum_probs=124.4
Q ss_pred CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCC
Q 011268 172 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 251 (489)
Q Consensus 172 G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~ 251 (489)
|..--+--+.|.++..|-.+. |++-+.-. .....|..+.....+..--+.|..|.+|=-.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~s-g~C~~~l~------------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~------- 319 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCST-GECTHSLQ------------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT------- 319 (537)
T ss_pred CCCEEEEEecCCcEEeEecCC-CcEEEEec------------CCCceEEEEEccCceEeeccCCceEEEEecc-------
Confidence 445555556688888887544 33321110 0011234444444444444567778888322
Q ss_pred CCCCCCCCceeecCCC-CCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEE
Q 011268 252 GDTLDRPTPKSIAPLE-EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 330 (489)
Q Consensus 252 ~~~~~~~~p~~i~~~~-~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~ 330 (489)
.+..+..+. -...|..|.+.....+.-+.+|.|-.|-... -..+..+......|..+.
T Consensus 320 -------n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~--------------~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 320 -------NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT--------------GKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred -------CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh--------------ceeeeeecCCcceEEEEE
Confidence 233333332 2368999999999999999999999996531 122333333444677776
Q ss_pred ecC-CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCC--cEEEEEeeCCeEEEEEcCCcEEEEEcCCCCC
Q 011268 331 AGD-EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSH--LAVQVCARKRKTFVLVDTGSVYGFGWMGFGS 407 (489)
Q Consensus 331 ~g~-~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~--~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gq 407 (489)
.+. .+.+=-.-|+.+-+|-....- +.+..++.. -+..+.+-..|-+--..||.|..|-.+..++
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~-------------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKR-------------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchh-------------hhhhhhcCCcccccccccccceeEeccccccEEEeecccCce
Confidence 666 665555556777777653320 112222211 1234444455555556788999995544333
Q ss_pred CCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCC
Q 011268 408 LGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGH 465 (489)
Q Consensus 408 LG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~ 465 (489)
+=. ...| ....|..++.+....++-..+|.+.-| +=..|++..
T Consensus 446 ~~~--------~~~~------~~~~v~~l~~~~~~il~s~~~~~~~l~-dl~~~~~~~ 488 (537)
T KOG0274|consen 446 LRT--------LEGR------HVGGVSALALGKEEILCSSDDGSVKLW-DLRSGTLIR 488 (537)
T ss_pred eee--------eccC------CcccEEEeecCcceEEEEecCCeeEEE-ecccCchhh
Confidence 211 1111 123566666666777777888998888 333455443
No 20
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.02 E-value=1.9 Score=44.14 Aligned_cols=107 Identities=27% Similarity=0.358 Sum_probs=70.5
Q ss_pred ccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-CEEEEEEcCCcEE-EecCCCCcc
Q 011268 224 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVY-SFGSGSNFC 301 (489)
Q Consensus 224 ~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-~~~~~lt~~G~vy-~wG~n~~gq 301 (489)
.|..-..||..+|++|-= -|.. ...+.-...+......++.+|++|. .-..+++.+|.|| --|-..+.+
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs--~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVS--VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEEe-------cccc--CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 456667788888888852 2222 2222222222222224799999999 8889999999876 456666666
Q ss_pred cCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEE
Q 011268 302 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 347 (489)
Q Consensus 302 lG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~ 347 (489)
.|..=. +...|+... .++.|+.|.....+||++|++|.
T Consensus 261 ~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 261 EGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEE
Confidence 554322 333444332 38899999999999999999986
No 21
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.80 E-value=4.2 Score=41.80 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=68.3
Q ss_pred eCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC-CeeEEEEcCCcEEE-EeCCCCCc
Q 011268 171 ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLTIRGHVHT-CGSNTHGQ 248 (489)
Q Consensus 171 ~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-~h~~~Lt~~G~vy~-wG~n~~Gq 248 (489)
.|..-..+|..+|++|.= -|.......-..-+.+.. ...+.+|++|- .-..+++++|.||. -|-....+
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICP--YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCC--CCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 455666788888888842 122222111111112221 22579999999 77889999999864 55555555
Q ss_pred cCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEe
Q 011268 249 LGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294 (489)
Q Consensus 249 lG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~w 294 (489)
.|..-. +..+|... ..++.|+.|..-.-+|+.+|.+|.-
T Consensus 261 ~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 554332 34444433 3499999999999999999999863
No 22
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.95 E-value=1.4 Score=50.79 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=73.6
Q ss_pred ecCCCCCCCEEEEE-eCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeE-EEEc
Q 011268 263 IAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHV-VALD 340 (489)
Q Consensus 263 i~~~~~~~~i~~i~-~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~-~~lt 340 (489)
+..++ ...|..++ .+.++.++|+++|++-..= ....|+.++.-.. ...|++|++-..|. +|+|
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald~qg~lt~h~-------------k~g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALDDQGDLTAHQ-------------KPGRPVPLSRPGL-SGEIKDLALDEKQNLYALT 761 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEeccCCcccccc-------------CCCCCccCCCCCC-CcchhheeeccccceeEec
Confidence 44454 24566655 4678999999999876531 1112555443222 34799999988866 5699
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCC
Q 011268 341 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTG 395 (489)
Q Consensus 341 ~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G 395 (489)
.+|++|..-...+.+.-.+ .......++|....+.++..+....+|.+.+.-++
T Consensus 762 ~~G~Lf~~~k~~WQ~~~~~-~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 762 STGELFRLPKEAWQGNAEG-DQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCceeecCHHHhhCcccC-CccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 9999997543222211111 11223455666567778999999999988877554
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.76 E-value=14 Score=34.22 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=60.1
Q ss_pred CceEeeccccCCccEEEE--EecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEe--eCCe
Q 011268 312 QPRAIQTFRRKGIHVVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA--RKRK 387 (489)
Q Consensus 312 ~p~~i~~~~~~~~~i~~i--~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~h 387 (489)
.|.++..+.....+|..| .|-..-.+-=.+||.+-.|-.-. +. .++..... ..|..|.. ...+
T Consensus 72 np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~--------~qR~~~~~--spVn~vvlhpnQte 138 (311)
T KOG0315|consen 72 NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LS--------CQRNYQHN--SPVNTVVLHPNQTE 138 (311)
T ss_pred CCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---cc--------cchhccCC--CCcceEEecCCcce
Confidence 344444444333344433 34333333445778777776532 11 11111111 22333333 3455
Q ss_pred EEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCC--eEEEEEcCCCEEEEeCCC
Q 011268 388 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY--HTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 388 t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~--ht~~l~~~G~v~~wG~n~ 459 (489)
-+.-+++|.|+.|-....- -.....|... ..|.+++.... -.++..+.|+.|.|-.-.
T Consensus 139 Lis~dqsg~irvWDl~~~~---------c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENS---------CTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred EEeecCCCcEEEEEccCCc---------cccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 5666788999999843211 1111222221 35666666544 445677889999996533
No 24
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.11 E-value=0.063 Score=50.61 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=31.8
Q ss_pred cccccCChHHHHHHHhcC---CCCcccccccccccccccccC
Q 011268 8 FSIEELPSHLIFEILTSG---RLSAVDLAHLELTSKTFGGSH 46 (489)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~---~L~~~d~~~L~~t~~~f~~~~ 46 (489)
+.+..||++||..||-.+ .||-++|.+|++|||-|..++
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 456789999999988533 577888999999999888864
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=0.043 Score=59.79 Aligned_cols=130 Identities=14% Similarity=0.018 Sum_probs=84.9
Q ss_pred CCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCC--CCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEE
Q 011268 216 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG--DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYS 293 (489)
Q Consensus 216 ~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~--~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~ 293 (489)
..+++.|.+-.+..++|..+|++|.|-+....-+-.. -..+...|.....-...++|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 4568888888888899999999999998766544321 11122222221111123799999999999999999999999
Q ss_pred ecCCCCcccCCCCCC--CCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCC
Q 011268 294 FGSGSNFCLGHGEQH--DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 352 (489)
Q Consensus 294 wG~n~~gqlG~~~~~--~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~ 352 (489)
|=. .+|.+-.. ....-+.+ ...+..+++..|...|.++...+.-+|=||---
T Consensus 453 WlD----EcgagV~fkLa~ea~Tki---eed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFKLAHEAQTKI---EEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHh----hhhhhhhhhhhhhhhhhh---hhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 943 11111110 01111122 224456777788889999999999999999543
No 26
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=85.61 E-value=43 Score=33.75 Aligned_cols=153 Identities=13% Similarity=0.157 Sum_probs=78.1
Q ss_pred eEEEEccC--CeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCC-CCCEEEEEeCCCEEEEE--EcCCcEEE
Q 011268 219 CKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE-VGSVVQIAAGPSYMLAV--TGNGVVYS 293 (489)
Q Consensus 219 i~~V~~G~--~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~-~~~i~~i~~G~~~~~~l--t~~G~vy~ 293 (489)
|..+++.. ++.++=+..|++|.|--+. |.| +..+.. ...|..+-...+-++++ .+||.|+.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss-G~L-------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS-GIL-------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLV 149 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc-ccH-------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEE
Confidence 44554433 3334445899999995432 211 111100 03455555444444444 46889998
Q ss_pred ecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCe--EEEE--cCCCcEEEEecCCCCCCCCCCCCCccccee
Q 011268 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--VVAL--DSSGYVYTWGKGYCGALGHGDEIDKTLPEP 369 (489)
Q Consensus 294 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h--~~~l--t~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 369 (489)
|=--+- -+..+...|.++-.+..-...|+++.+|..- +.++ ..|..+-.|-... +. .-..
T Consensus 150 W~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~-----LLlt 213 (476)
T KOG0646|consen 150 WLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GV-----LLLT 213 (476)
T ss_pred EEEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ce-----eeEE
Confidence 853221 1222222555556666666788888887663 2222 2344444443211 10 1111
Q ss_pred eccCCCCcEEEEEeeCCeEEEEEcCCcEEEEE
Q 011268 370 LSSLKSHLAVQVCARKRKTFVLVDTGSVYGFG 401 (489)
Q Consensus 370 v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG 401 (489)
+......+.+-+.-++.+.++=+++|++|..-
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 11112223455666788888889999988754
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=84.65 E-value=34 Score=31.75 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=37.3
Q ss_pred ccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCE--EEEEEcCCcEEEecC
Q 011268 224 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSY--MLAVTGNGVVYSFGS 296 (489)
Q Consensus 224 ~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~--~~~lt~~G~vy~wG~ 296 (489)
--..+.+.=+.+|.|+.|--.+ ........|... ..|.+++..++- ..+.++.|..|+|-.
T Consensus 134 pnQteLis~dqsg~irvWDl~~------~~c~~~liPe~~------~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGE------NSCTHELIPEDD------TSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CCcceEEeecCCCcEEEEEccC------CccccccCCCCC------cceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 3445556668899999995321 111122223221 467777777654 456788999999964
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.19 E-value=65 Score=34.69 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=66.2
Q ss_pred CEEEEEeCCc--eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEE--EcCCcEEE
Q 011268 165 HVVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL--TIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G~~--~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~L--t~~G~vy~ 240 (489)
-|.+++.+.. .++.+...|.-.++|...-|||..-........-++--... .+..++-..+-.++. .+||+|-.
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEE
Confidence 4566666644 35666777888888888888887654422222221111111 233333333322222 36777777
Q ss_pred EeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCC
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 299 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~ 299 (489)
|-..+ | .-...+.........++...-.+..+...-||+|-+|--..+
T Consensus 377 Wn~~S-g----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 377 WNTQS-G----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EeccC-c----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 73221 0 011111111122356677777777788888999999976554
No 29
>PHA03098 kelch-like protein; Provisional
Probab=83.50 E-value=53 Score=34.58 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=21.5
Q ss_pred cccccCChHHHHHHHhcCCCCcc-cccccccccccc
Q 011268 8 FSIEELPSHLIFEILTSGRLSAV-DLAHLELTSKTF 42 (489)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~L~~~-d~~~L~~t~~~f 42 (489)
....+||++.+..+|.+-.|... +..-++++.++.
T Consensus 144 ~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~ 179 (534)
T PHA03098 144 PDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWL 179 (534)
T ss_pred chhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHH
Confidence 45678899999999886555443 222334555543
No 30
>PF13013 F-box-like_2: F-box-like domain
Probab=82.31 E-value=0.42 Score=38.31 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=29.4
Q ss_pred ccccCChHHHHHHHhcCCCCccccccccccccccc
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFG 43 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~ 43 (489)
.+.|||.||++.|+- +++..++..|+.+|+.+.
T Consensus 21 tl~DLP~ELl~~I~~--~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD--YCNDPILLALSRTCRAYR 53 (109)
T ss_pred chhhChHHHHHHHHh--hcCcHHHHHHHHHHHHHH
Confidence 478999999999999 899999999999998443
No 31
>PHA02713 hypothetical protein; Provisional
Probab=81.17 E-value=33 Score=36.43 Aligned_cols=22 Identities=5% Similarity=0.261 Sum_probs=14.9
Q ss_pred eCCceeEEEEcCCcEEEEeCCC
Q 011268 171 ASENHAAFVLQSGQVFTCGDNS 192 (489)
Q Consensus 171 ~G~~~~~~lt~~G~v~~wG~n~ 192 (489)
..+.+..+..-+|+||++|-..
T Consensus 340 ~~R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 340 KNRCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred chhhceeEEEECCEEEEECCcC
Confidence 3444455566689999998643
No 32
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=77.26 E-value=1.3e+02 Score=33.65 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=107.2
Q ss_pred EEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCce--eecCCCCCCCEEEEEeC-----CCEEEEEEcCCcEEEe
Q 011268 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK--SIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSF 294 (489)
Q Consensus 222 V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~--~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~vy~w 294 (489)
++...++.+++|+.|++|..-...--..+ ....-.|. .+ .+...++|+.+.+- ....+++|++|.+.-.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~---r~~~G~~i~~ll-~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEAS---RTAKGKPIVNLL-PLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCC---cCCCCcCHHHhc-cCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 34456667888999999998332211111 11111111 12 23344678777762 2357888999977655
Q ss_pred cCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeecc
Q 011268 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS 372 (489)
Q Consensus 295 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~ 372 (489)
-.+.+-... . .......+.. +..++.+.. ...+.+++|++|++|..-....-..+....... .+..
T Consensus 618 ~l~~~~~~~------r-~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~----~i~L 685 (800)
T TIGR01063 618 SLTEFSNIR------S-NGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVR----GIKL 685 (800)
T ss_pred EhHHhhhhc------c-CCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCee----cccC
Confidence 332221100 0 0001111111 123443333 334678899999999987655433333221111 1222
Q ss_pred CCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEE--ecCCeEEEEEc
Q 011268 373 LKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTD 448 (489)
Q Consensus 373 ~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~--~G~~ht~~l~~ 448 (489)
-.+.+|+.+..- ..+.+++|++|.+.-.=...+-....+... ... ..+..- +..++.+. ......+++++
T Consensus 686 ~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kG----v~~-ikl~~~-~d~lv~~~~v~~~~~v~liT~ 759 (800)
T TIGR01063 686 KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKG----VKS-IKITDR-NGQVVGAIAVDDDDELMLITS 759 (800)
T ss_pred CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcc----eEE-EEccCC-CCeEEEEEEecCCCeEEEEec
Confidence 345567666542 335677888887665532222111110000 000 011110 11233222 23456888999
Q ss_pred CCCEEEEeCCCCCCCC
Q 011268 449 RGRLFGFGDNERAQLG 464 (489)
Q Consensus 449 ~G~v~~wG~n~~GqLG 464 (489)
+|++..+-.++--..|
T Consensus 760 ~G~~lrf~~~eI~~~g 775 (800)
T TIGR01063 760 AGKLIRTSVQDVSEQG 775 (800)
T ss_pred CCeEEEeeHhhCCccc
Confidence 9998888766544444
No 33
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.23 E-value=93 Score=35.84 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=97.3
Q ss_pred eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCC-CEEEEEeCCceeEEEEcCCcEEEEeCCCCC-cccCCCCCCce
Q 011268 128 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA-HVVQVSASENHAAFVLQSGQVFTCGDNSSF-CCGHRDTNRPI 205 (489)
Q Consensus 128 ~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~-~i~~vs~G~~~~~~lt~~G~v~~wG~n~~g-qlg~~~~~~~~ 205 (489)
.|.++|.|-.++.+++-.-+..+.......+--|... -+-. -.|.++|...=+|+..|-...- +.+.......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~- 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSIFNTS- 171 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcccccccc-
Confidence 7899999999987777543333221111111111111 1111 2588899999999988854321 1111111010
Q ss_pred eccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCC-----CccCCCC-------------CCCCCCceeecCC-
Q 011268 206 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-----GQLGHGD-------------TLDRPTPKSIAPL- 266 (489)
Q Consensus 206 ~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~-----GqlG~~~-------------~~~~~~p~~i~~~- 266 (489)
..-...+..|..|++ +++|+||.-|.+.. -|...+- ......|..+..+
T Consensus 172 ----~~i~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 172 ----FKISVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ----eeeecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 000112333444332 55666665554321 0111110 0112245533333
Q ss_pred CCCCCEEEEEeCCCEEEE--EEcCCcEEEecCCCCcccCCCCC-----------CCCcCceEeeccccCCccEEEEEe--
Q 011268 267 EEVGSVVQIAAGPSYMLA--VTGNGVVYSFGSGSNFCLGHGEQ-----------HDELQPRAIQTFRRKGIHVVRVSA-- 331 (489)
Q Consensus 267 ~~~~~i~~i~~G~~~~~~--lt~~G~vy~wG~n~~gqlG~~~~-----------~~~~~p~~i~~~~~~~~~i~~i~~-- 331 (489)
...++|.+|+-.....+. +++.|.|=+|-....|+-+.-.- .+...|..-+ .-..|++|+.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s----~f~~IvsI~~l~ 315 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDS----VFFSIVSISPLS 315 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCc----ccceeEEecccC
Confidence 333689999999877654 56778776665444443322100 0001111111 1124555544
Q ss_pred ----cCCeEEEEcCCC-cEEEEec
Q 011268 332 ----GDEHVVALDSSG-YVYTWGK 350 (489)
Q Consensus 332 ----g~~h~~~lt~~G-~vy~wG~ 350 (489)
-.-|.+|+|..| ++|.-|.
T Consensus 316 ~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 316 ASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccccceeEEEEecCCeEEEEecc
Confidence 345999999999 7887664
No 34
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=3.1 Score=46.32 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=57.6
Q ss_pred CCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEE-cCcCCCCCEEEEEecCCeEEEEEcCCCEE
Q 011268 375 SHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI-LDSLRAHHVSQISTGLYHTVVVTDRGRLF 453 (489)
Q Consensus 375 ~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~-v~~~~~~~v~~i~~G~~ht~~l~~~G~v~ 453 (489)
..+++.|.+-++.-++|..+|++|.|-+...--|-.+-.. ..+..-|.. .-.+.+.+|+.+++..-..-++|++|+|-
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai-~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAI-NKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhc-ccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 4478888888888899999999999998765544322110 111112221 12456789999999999999999999999
Q ss_pred EEe
Q 011268 454 GFG 456 (489)
Q Consensus 454 ~wG 456 (489)
+|=
T Consensus 452 sWl 454 (3015)
T KOG0943|consen 452 SWL 454 (3015)
T ss_pred hHH
Confidence 993
No 35
>PLN02153 epithiospecifier protein
Probab=76.25 E-value=82 Score=30.92 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=12.4
Q ss_pred CEEEEEEcCCcEEEecCCC
Q 011268 280 SYMLAVTGNGVVYSFGSGS 298 (489)
Q Consensus 280 ~~~~~lt~~G~vy~wG~n~ 298 (489)
.|++++ .++++|.+|-..
T Consensus 130 ~~~~~~-~~~~iyv~GG~~ 147 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGVS 147 (341)
T ss_pred eeEEEE-ECCEEEEECCcc
Confidence 566554 467999998643
No 36
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.15 E-value=16 Score=33.55 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.7
Q ss_pred CCEEEEEeCCCEEEEEEcCCcEEEecCCC
Q 011268 270 GSVVQIAAGPSYMLAVTGNGVVYSFGSGS 298 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~~G~vy~wG~n~ 298 (489)
.+++.+.|-..+.+++|.+|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 57899999999999999999999996543
No 37
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.66 E-value=16 Score=33.57 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=24.4
Q ss_pred CCCeEEEEccCCeeEEEEcCCcEEEEeC
Q 011268 216 GVPCKQVTAGLNFTGFLTIRGHVHTCGS 243 (489)
Q Consensus 216 ~~~i~~V~~G~~h~~~Lt~~G~vy~wG~ 243 (489)
+.++..+.|-..+.++||++|.+|+|--
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 4467889999999999999999999953
No 38
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.29 E-value=98 Score=30.95 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=56.6
Q ss_pred eeCCCCCCEEEEEeCCc-ee-EEEEcCCc-EEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC-CeeEEEE
Q 011268 158 INFPSAAHVVQVSASEN-HA-AFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLT 233 (489)
Q Consensus 158 ~~~~~~~~i~~vs~G~~-~~-~~lt~~G~-v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-~h~~~Lt 233 (489)
+.......+..|..|.. |. .+.+.||+ +|+.+. .|.+ ..+.......+..|..|. .+.++++
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v------------sviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV------------SVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE------------EEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE------------EEEECCcccEEEEEecCCCcceEEEc
Confidence 33344445777877654 54 45677787 777753 2322 233333444566776655 4678889
Q ss_pred cCCcEEEEeCCCCCccCCCCCCCCCCceeecCC--C---CCCCEEEEEeCC---CEEEEEEcCCcEEEe
Q 011268 234 IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL--E---EVGSVVQIAAGP---SYMLAVTGNGVVYSF 294 (489)
Q Consensus 234 ~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~--~---~~~~i~~i~~G~---~~~~~lt~~G~vy~w 294 (489)
.||+...-++...+++-.-+......-..++.. . ...++..|.+.. .+.+.+.+.++||.-
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 999865555433444332111111111111110 0 113566665432 256667777888875
No 39
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=73.78 E-value=1.6e+02 Score=32.98 Aligned_cols=215 Identities=11% Similarity=0.095 Sum_probs=106.2
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc-----CCeeEEEEcCCcEEEEeCC
Q 011268 170 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSN 244 (489)
Q Consensus 170 s~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G-----~~h~~~Lt~~G~vy~wG~n 244 (489)
+....+.+++|+.|++|..-...-...+....+.+. ...+...++.+|+.+.+- ....+++|++|.+--.-.+
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i--~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~ 620 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPI--VNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT 620 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCH--HHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH
Confidence 344566889999999999843332222221111111 112233456667766652 2356778999977765433
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccC
Q 011268 245 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 322 (489)
Q Consensus 245 ~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~ 322 (489)
.+-... ........+.+...++.+.. ...+.+++|++|++|.+-...-...|... ....+..+. .
T Consensus 621 ~~~~~~-------r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~-~ 687 (800)
T TIGR01063 621 EFSNIR-------SNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLK-N 687 (800)
T ss_pred Hhhhhc-------cCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCC-C
Confidence 221100 00111111112234554433 34578999999999988655443333221 112222222 3
Q ss_pred CccEEEEEec--CCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCC--CCcEEEEE--eeCCeEEEEEcCCc
Q 011268 323 GIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVC--ARKRKTFVLVDTGS 396 (489)
Q Consensus 323 ~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~v~--~G~~ht~~lt~~G~ 396 (489)
+.+|+.+..- ..+.+++|++|.+...-...+-....+.. ......+. +..++.+. ..+...+++|++|.
T Consensus 688 ~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~k-----Gv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~ 762 (800)
T TIGR01063 688 EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGK-----GVKSIKITDRNGQVVGAIAVDDDDELMLITSAGK 762 (800)
T ss_pred CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCc-----ceEEEEccCCCCeEEEEEEecCCCeEEEEecCCe
Confidence 3456665542 33567789999777665433221111100 01111111 12333322 24455788888998
Q ss_pred EEEEEcCC
Q 011268 397 VYGFGWMG 404 (489)
Q Consensus 397 vy~wG~n~ 404 (489)
+..+-.++
T Consensus 763 ~lrf~~~e 770 (800)
T TIGR01063 763 LIRTSVQD 770 (800)
T ss_pred EEEeeHhh
Confidence 88776444
No 40
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.47 E-value=49 Score=35.27 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=87.8
Q ss_pred ceeEEeeCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCC
Q 011268 122 YHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHR 199 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~--~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~ 199 (489)
.+++++-+|.||+.|--+.|. ..... -.......+. ++-.+...+....+..-+|.||+-|--+ |+-...
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~---~~l~~----ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~ 396 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGS---DRLSS----VERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLN 396 (571)
T ss_pred cccEEEECCEEEEEccccCCC---cccce----EEEecCCCCceeccCCccCccccceeEEECCEEEEEeccc-cccccc
Confidence 344445888999999654321 11111 0011111111 2334555555566667789999998544 222221
Q ss_pred CCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEE---
Q 011268 200 DTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--- 276 (489)
Q Consensus 200 ~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~--- 276 (489)
. -....|..-+- ..+-...-......+..-+|+||..|-.....- ...-...-.+. .+.-..++
T Consensus 397 s--vE~YDp~~~~W---~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~-------~l~sve~YDP~-t~~W~~~~~M~ 463 (571)
T KOG4441|consen 397 S--VECYDPVTNKW---TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN-------CLNSVECYDPE-TNTWTLIAPMN 463 (571)
T ss_pred c--EEEecCCCCcc---cccCCCCcceeeeEEEEECCEEEEEcCcCCCcc-------ccceEEEEcCC-CCceeecCCcc
Confidence 1 11222221110 001111112333344455899999986432210 00000000000 01111111
Q ss_pred eCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEE---EecCCeEEEEcCCCcEEEEec
Q 011268 277 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV---SAGDEHVVALDSSGYVYTWGK 350 (489)
Q Consensus 277 ~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i---~~g~~h~~~lt~~G~vy~wG~ 350 (489)
.-..+.-+.+-++.||+.|-.+. + .....++.+.+...+.+.+ .....+.-+..-++++|+-|-
T Consensus 464 ~~R~~~g~a~~~~~iYvvGG~~~-~---------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 464 TRRSGFGVAVLNGKIYVVGGFDG-T---------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred cccccceEEEECCEEEEECCccC-C---------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 11222225566889999986442 1 1111133333333333333 345556666667889999885
No 41
>PRK05560 DNA gyrase subunit A; Validated
Probab=72.70 E-value=1.7e+02 Score=32.82 Aligned_cols=217 Identities=15% Similarity=0.170 Sum_probs=109.0
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC-----CeeEEEEcCCcEEEEeCC
Q 011268 170 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSN 244 (489)
Q Consensus 170 s~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~Lt~~G~vy~wG~n 244 (489)
+....+.+++|+.|++|..-...-...+....+.+. ...+...++.+|+.+.+-. ...+++|++|.+--.-..
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i--~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPI--VNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEH--HHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 344566889999999999865543222221121111 1123334566777776644 346888999977655332
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccC
Q 011268 245 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 322 (489)
Q Consensus 245 ~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~ 322 (489)
.+-.... .......+.+...++.+.. ...+.+++|++|++|.+-...-...|... ....+..+. .
T Consensus 623 ~~~~~~r-------~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~-~ 689 (805)
T PRK05560 623 EFSNIRS-------NGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLR-E 689 (805)
T ss_pred Hhhhccc-------CCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCC-C
Confidence 2211000 0111111222244554433 34578999999999988554432222211 122222222 3
Q ss_pred CccEEEEEecC---CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccC-C-CCcEEEE--EeeCCeEEEEEcCC
Q 011268 323 GIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-K-SHLAVQV--CARKRKTFVLVDTG 395 (489)
Q Consensus 323 ~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~-~-~~~i~~v--~~G~~ht~~lt~~G 395 (489)
+.+|+.+.+.. .+.+++|+.|.+...-.+.+-....+.. ......+ . +..++.+ ..++...+++|.+|
T Consensus 690 ~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k-----G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G 764 (805)
T PRK05560 690 GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK-----GVITIKITEKNGKLVGALPVDDDDEIMLITDSG 764 (805)
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC-----cEEeeeccCCCCeEEEEEEecCCCeEEEEecCC
Confidence 44566655533 2577788888777654333221111000 1111111 1 1233333 23455678889999
Q ss_pred cEEEEEcCCCC
Q 011268 396 SVYGFGWMGFG 406 (489)
Q Consensus 396 ~vy~wG~n~~g 406 (489)
++.-+-.++--
T Consensus 765 ~~lrf~~~eI~ 775 (805)
T PRK05560 765 KLIRTRVSEIS 775 (805)
T ss_pred eEEEEEHHHCC
Confidence 98877654433
No 42
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=72.01 E-value=1.5e+02 Score=31.99 Aligned_cols=109 Identities=22% Similarity=0.233 Sum_probs=56.9
Q ss_pred CCCCeEEEEecCceeEEeeCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCc-EEEE
Q 011268 110 SAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQ-VFTC 188 (489)
Q Consensus 110 ~~~~~~~i~~G~~h~~~l~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~-v~~w 188 (489)
+.++.--++.|..|-++++ ||.|-.|..+. .+ + -..+|..++....-++++|.-.+ |-.|
T Consensus 131 sp~~kyvvSVGsQHDMIVn---v~dWr~N~~~a------sn--------k--iss~Vsav~fsEdgSYfvT~gnrHvk~w 191 (1080)
T KOG1408|consen 131 SPGNKYVVSVGSQHDMIVN---VNDWRVNSSGA------SN--------K--ISSVVSAVAFSEDGSYFVTSGNRHVKLW 191 (1080)
T ss_pred cCCCcEEEeeccccceEEE---hhhhhhccccc------cc--------c--cceeEEEEEEccCCceeeeeeeeeEEEE
Confidence 3444445667777777762 56666664331 00 0 01245555555555555554433 2222
Q ss_pred eCCCCCcccCCCCCCceeccEEecc---CCCCCeEEEEccCC----eeEEEEcCCcEEEEe
Q 011268 189 GDNSSFCCGHRDTNRPIFRPRLVEA---LKGVPCKQVTAGLN----FTGFLTIRGHVHTCG 242 (489)
Q Consensus 189 G~n~~gqlg~~~~~~~~~~p~~v~~---~~~~~i~~V~~G~~----h~~~Lt~~G~vy~wG 242 (489)
.-. .+. ....++..|.+-.. +....+.+|+||.. .+++||..|.+.-|-
T Consensus 192 -yl~---~~~-KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 192 -YLQ---IQS-KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred -Eee---ccc-cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 111 011 11122333332222 23345789999998 899999999998874
No 43
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=70.85 E-value=1.2e+02 Score=30.60 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=35.9
Q ss_pred CCCeEEEEecCceeEEe---eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEE--EcCCcE
Q 011268 111 AGNQMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFV--LQSGQV 185 (489)
Q Consensus 111 ~~~~~~i~~G~~h~~~l---~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~l--t~~G~v 185 (489)
+|.+..+++-..-.+++ ..|++|.|=-+. |.|=.-- -.--+.|..+....+..+++ .+||.|
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVL------------SAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHH------------HhhccceeEEEEeCCCcEEEecCCCccE
Confidence 44455565554333333 689999997553 3221100 00112455555555555555 457889
Q ss_pred EEEeCC
Q 011268 186 FTCGDN 191 (489)
Q Consensus 186 ~~wG~n 191 (489)
.+|--.
T Consensus 148 ~vW~l~ 153 (476)
T KOG0646|consen 148 LVWLLT 153 (476)
T ss_pred EEEEEE
Confidence 999643
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=69.83 E-value=89 Score=29.11 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=73.8
Q ss_pred ceeccEEeccCCCCCeEE-EEccCCeeEEE-EcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CC
Q 011268 204 PIFRPRLVEALKGVPCKQ-VTAGLNFTGFL-TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PS 280 (489)
Q Consensus 204 ~~~~p~~v~~~~~~~i~~-V~~G~~h~~~L-t~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~ 280 (489)
+...|..+..-.+. |+. +-|-.+|++.- ++++.|-.|-.. +-+.+..+.-..+|.+.... ..
T Consensus 132 p~App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~tVRLWD~r--------------Tgt~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 132 PKAPPKEISGHTGG-IRTVLWCHEDKCILSSADDKTVRLWDHR--------------TGTEVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred CCCCchhhcCCCCc-ceeEEEeccCceEEeeccCCceEEEEec--------------cCcEEEEEecCCCCcceeeccCC
Confidence 34456555544332 444 45666776655 678888888432 11222222212344444333 34
Q ss_pred EEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCC
Q 011268 281 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD 360 (489)
Q Consensus 281 ~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~ 360 (489)
+.+.+...+.|-.|-.+.++.|- ....|..+........+ ....|| -+++.+|.+-.+.--.+|.
T Consensus 197 ~ilTia~gssV~Fwdaksf~~lK-----s~k~P~nV~SASL~P~k-~~fVaG-------ged~~~~kfDy~TgeEi~~-- 261 (334)
T KOG0278|consen 197 RILTIAYGSSVKFWDAKSFGLLK-----SYKMPCNVESASLHPKK-EFFVAG-------GEDFKVYKFDYNTGEEIGS-- 261 (334)
T ss_pred CEEEEecCceeEEecccccccee-----eccCccccccccccCCC-ceEEec-------CcceEEEEEeccCCceeee--
Confidence 45555556678888777766442 23345544433222222 112222 2355666666544222222
Q ss_pred CCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEc
Q 011268 361 EIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGW 402 (489)
Q Consensus 361 ~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~ 402 (489)
. .+=.-|.-|++-.+-+|++|+-|+
T Consensus 262 ------------~-----nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 262 ------------Y-----NKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ------------c-----ccCCCCceEEEEECCCCceeeccC
Confidence 0 001124445666666777777664
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=69.74 E-value=59 Score=30.79 Aligned_cols=138 Identities=18% Similarity=0.226 Sum_probs=75.5
Q ss_pred CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC---CeEEEEcCCCcEEEEecC-CCC
Q 011268 279 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKG-YCG 354 (489)
Q Consensus 279 ~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n-~~g 354 (489)
.-|.++-..||.||.-+... +.+|+- ....-+++.+..|. -|.+++..||..|.+-.+ ..+
T Consensus 63 ap~dvapapdG~VWft~qg~-gaiGhL--------------dP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-GAIGHL--------------DPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CccccccCCCCceEEecCcc-ccceec--------------CCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 45677888899998754432 333332 11222455554443 389999999999987653 222
Q ss_pred CCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCC-CCCCCCCCCCCCCceeccEEcCcCCCCCE
Q 011268 355 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG-FGSLGFPDRGVSDKVLRPRILDSLRAHHV 433 (489)
Q Consensus 355 qlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~-~gqLG~~~~~~~~~~~~P~~v~~~~~~~v 433 (489)
.++.........|.. .+.+-+.-.+.+++..|+||-.|++. +|.|--.. ..... .+..
T Consensus 128 R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~---~~i~v----fpaP----- 186 (353)
T COG4257 128 RLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR---NVISV----FPAP----- 186 (353)
T ss_pred EecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCccc---Cceee----eccC-----
Confidence 222211111112211 22333566678999999999999643 44432111 11000 0111
Q ss_pred EEEEecCCeEEEEEcCCCEEEE
Q 011268 434 SQISTGLYHTVVVTDRGRLFGF 455 (489)
Q Consensus 434 ~~i~~G~~ht~~l~~~G~v~~w 455 (489)
.-+.-.-++.|-||+||.-
T Consensus 187 ---qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 ---QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ---CCCCCcceEECCCCcEEEE
Confidence 1245567788999999965
No 46
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.72 E-value=1e+02 Score=35.61 Aligned_cols=210 Identities=16% Similarity=0.080 Sum_probs=102.2
Q ss_pred eEEEEcCCcEEEEeCCCCCcccCCCCCC-ceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCC-CccCCCC
Q 011268 176 AAFVLQSGQVFTCGDNSSFCCGHRDTNR-PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-GQLGHGD 253 (489)
Q Consensus 176 ~~~lt~~G~v~~wG~n~~gqlg~~~~~~-~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~-GqlG~~~ 253 (489)
-+.+|-|.++|.|-.++.+++..-+... .+..-..++.-.++.+-.| .|.++|..--+|+..|-... .+.+.+.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 4678999999999988866654333221 1111222222223333332 58899988888988875321 1111111
Q ss_pred CCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCC-------------CcccCC----C-CCCCCcCceE
Q 011268 254 TLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS-------------NFCLGH----G-EQHDELQPRA 315 (489)
Q Consensus 254 ~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~-------------~gqlG~----~-~~~~~~~p~~ 315 (489)
.... ..|.. +...|..|.+ +++|+||.-|.+. +++.-+ . .......|..
T Consensus 168 f~~~---~~i~~--dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 168 FNTS---FKISV--DGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred cccc---eeeec--CCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 1111 11111 1123444443 5555555554432 111000 0 0011223443
Q ss_pred eeccccCCccEEEEEecCCeEEE--EcCCCcEEEEecCCCCCCCCCCCCC---------cccceeeccCCCCcEEEEE--
Q 011268 316 IQTFRRKGIHVVRVSAGDEHVVA--LDSSGYVYTWGKGYCGALGHGDEID---------KTLPEPLSSLKSHLAVQVC-- 382 (489)
Q Consensus 316 i~~~~~~~~~i~~i~~g~~h~~~--lt~~G~vy~wG~n~~gqlg~~~~~~---------~~~p~~v~~~~~~~i~~v~-- 382 (489)
+..+......|.+|+......+. +++.|.|=+|-.+..|+-+.-.... ...-..+....-.+|++|+
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l 314 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPL 314 (1311)
T ss_pred hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEeccc
Confidence 33221334579999998877654 6888988777665555544311100 0000011111122355543
Q ss_pred ----eeCCeEEEEEcCCc-EEEEEc
Q 011268 383 ----ARKRKTFVLVDTGS-VYGFGW 402 (489)
Q Consensus 383 ----~G~~ht~~lt~~G~-vy~wG~ 402 (489)
.-+-|.+|+|..|- +|.=|+
T Consensus 315 ~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 315 SASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred CcccccceeEEEEecCCeEEEEecc
Confidence 34778899998884 666553
No 47
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=68.86 E-value=1.3e+02 Score=29.92 Aligned_cols=79 Identities=11% Similarity=0.085 Sum_probs=42.4
Q ss_pred eeCCCCCCEEEEEeCCceeEEEEcCCc-EEEEeC-CCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCC--------
Q 011268 158 INFPSAAHVVQVSASENHAAFVLQSGQ-VFTCGD-NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-------- 227 (489)
Q Consensus 158 ~~~~~~~~i~~vs~G~~~~~~lt~~G~-v~~wG~-n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~-------- 227 (489)
+......-+..|..|...-.+++.||+ +|..-. -+++-.|.... .-..+..-....+.+|..+..
T Consensus 32 iD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d-----~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 32 IDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTD-----YVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred EECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCC-----EEEEEECccCcEEeEEccCCCchhhccCc
Confidence 444444446678888765556888876 565532 22222222221 112222222334555655544
Q ss_pred -eeEEEEcCCc-EEEE
Q 011268 228 -FTGFLTIRGH-VHTC 241 (489)
Q Consensus 228 -h~~~Lt~~G~-vy~w 241 (489)
+.++|+.||+ +|..
T Consensus 107 ~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFY 122 (352)
T ss_pred cceEEECCCCCEEEEe
Confidence 3899999996 7766
No 48
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=68.74 E-value=1.4e+02 Score=30.34 Aligned_cols=75 Identities=13% Similarity=-0.036 Sum_probs=43.9
Q ss_pred EeeCCCCCCEEEEEeC-CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEec--cCCCCCeEEEEccCCeeEEEE
Q 011268 157 RINFPSAAHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAGLNFTGFLT 233 (489)
Q Consensus 157 ~~~~~~~~~i~~vs~G-~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~--~~~~~~i~~V~~G~~h~~~Lt 233 (489)
.+.+.. .+|+.+.-- ..+.++|.++|.++... -.|.. ....+..++ ...+.++-.+..+.+=.++||
T Consensus 75 ~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt 144 (410)
T PF04841_consen 75 SIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT 144 (410)
T ss_pred EEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEEC
Confidence 355555 577777653 45788999999988763 22322 011121121 111223344455555678899
Q ss_pred cCCcEEEE
Q 011268 234 IRGHVHTC 241 (489)
Q Consensus 234 ~~G~vy~w 241 (489)
.++++|.-
T Consensus 145 ~~~~~~~v 152 (410)
T PF04841_consen 145 GNNRFYVV 152 (410)
T ss_pred CCCeEEEE
Confidence 99999988
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=68.51 E-value=2.2 Score=40.57 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.3
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccccC-CCCCcc
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH-GLYPQK 52 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~-~~~~~~ 52 (489)
+.+.||++|++.||. -|--+||+....+||-|...+ +-..|.
T Consensus 97 ~~~slpDEill~IFs--~L~kk~LL~~~~VC~Rfyr~~~de~lW~ 139 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS--CLCKKELLKVSGVCKRFYRLASDESLWQ 139 (419)
T ss_pred CcccCCHHHHHHHHH--hccHHHHHHHHHHHHHHhhcccccccee
Confidence 347899999999999 899999999999999777765 445564
No 50
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=66.81 E-value=15 Score=22.47 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.2
Q ss_pred cEEEEEecC-CeEEEEcCCCcEEEE
Q 011268 325 HVVRVSAGD-EHVVALDSSGYVYTW 348 (489)
Q Consensus 325 ~i~~i~~g~-~h~~~lt~~G~vy~w 348 (489)
.+++|++|. ....+++.+|++|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888899999999963
No 51
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=64.97 E-value=13 Score=22.68 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=22.1
Q ss_pred CCEEEEEeCC-CEEEEEEcCCcEEEe
Q 011268 270 GSVVQIAAGP-SYMLAVTGNGVVYSF 294 (489)
Q Consensus 270 ~~i~~i~~G~-~~~~~lt~~G~vy~w 294 (489)
.++++|++|. +...+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4799999999 899999999999863
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.14 E-value=1.1e+02 Score=30.57 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=40.8
Q ss_pred CCEEEEEeCCCEEEEEE--cCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEE--cCCCcE
Q 011268 270 GSVVQIAAGPSYMLAVT--GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYV 345 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~l--t~~G~v 345 (489)
.+|..++-..+.-++|. .+.++..|-.-+ ...+++...-.....-|.+-.+|.+..++. ++|++|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e-----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEE-----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecch-----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 57777776655444444 466788885321 111222222122223467777777756665 689999
Q ss_pred EEEecC
Q 011268 346 YTWGKG 351 (489)
Q Consensus 346 y~wG~n 351 (489)
|.|-.-
T Consensus 465 yIWhr~ 470 (519)
T KOG0293|consen 465 YIWHRI 470 (519)
T ss_pred EEEEcc
Confidence 999763
No 53
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=63.98 E-value=2.2e+02 Score=30.93 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=59.0
Q ss_pred EEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCC-CCCEEEEEeCCceeEEE--EcCCcEEEEeCCCCCcccCCC
Q 011268 125 LLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASENHAAFV--LQSGQVFTCGDNSSFCCGHRD 200 (489)
Q Consensus 125 ~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~-~~~i~~vs~G~~~~~~l--t~~G~v~~wG~n~~gqlg~~~ 200 (489)
+++ ..|.-.++|+..-|||..=.-... .-.++... ..+|..++-.....++. .+||+|-.|-..+..++-
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsE---sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v--- 386 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSE---SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV--- 386 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeecc---ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE---
Confidence 344 568888899888888874211110 00011110 11455555544433333 467788888655522110
Q ss_pred CCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCC
Q 011268 201 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH 246 (489)
Q Consensus 201 ~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~ 246 (489)
+.-+...+...++.+.-.+..+-.+-||.|=+|--..+
T Consensus 387 --------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 387 --------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred --------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 11122234556777777777777888999999965433
No 54
>PLN02153 epithiospecifier protein
Probab=63.50 E-value=1.5e+02 Score=28.96 Aligned_cols=17 Identities=6% Similarity=0.192 Sum_probs=12.4
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|+++.-++++|++|-.
T Consensus 78 ~~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGR 94 (341)
T ss_pred ceEEEEECCEEEEECCC
Confidence 35555578899999964
No 55
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=62.56 E-value=1.3e+02 Score=27.90 Aligned_cols=80 Identities=15% Similarity=0.303 Sum_probs=42.0
Q ss_pred CCEEEEEeCCCEEEEEEcCCcEEEecCCCCcc-cCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEE
Q 011268 270 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC-LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 348 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gq-lG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~w 348 (489)
.+|-.++.-..|.+.- -+|.||.|-.++.-. ++....-....|.+....+-..++-..+--..+..+.---|+.+|+|
T Consensus 63 gpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred CCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 4677777666655443 459999999887655 44333333344555433322222222222223333333456677777
Q ss_pred ec
Q 011268 349 GK 350 (489)
Q Consensus 349 G~ 350 (489)
-.
T Consensus 142 dl 143 (325)
T KOG0649|consen 142 DL 143 (325)
T ss_pred Ee
Confidence 54
No 56
>PRK05560 DNA gyrase subunit A; Validated
Probab=61.89 E-value=2.7e+02 Score=31.20 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=108.0
Q ss_pred EEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCce--eecCCCCCCCEEEEEeCC-----CEEEEEEcCCcEEEe
Q 011268 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK--SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSF 294 (489)
Q Consensus 222 V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~--~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~vy~w 294 (489)
.+....+.+++|+.|++|..-...--. ......-.|. .+. +...++|+.+.+-. ...+++|++|.+...
T Consensus 544 ~~~t~d~LllfTs~Grv~~l~v~~iP~---~~~~~~G~~i~~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 544 VASTHDTLLFFTNRGRVYRLKVYEIPE---ASRTARGRPIVNLLP-LEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred EecCCCeEEEEecCCeEEEEEhhhCcC---CCcCCCCeEHHHhcC-CCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 344566678899999999985442211 1111111111 122 33446788887754 457889999977654
Q ss_pred cCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceee-c
Q 011268 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPL-S 371 (489)
Q Consensus 295 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v-~ 371 (489)
-...+-.... .......+. .+..++.+.. ...+.+++|++|++|.+-....-..+.... +..+ .
T Consensus 620 ~l~~~~~~~r-------~G~~~ikLk-e~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~-----Gv~~i~ 686 (805)
T PRK05560 620 SLSEFSNIRS-------NGIIAINLD-EGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR-----GVRGIK 686 (805)
T ss_pred EhHHhhhccc-------CCceeeccC-CCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC-----Cccccc
Confidence 3322210000 011111111 1223444333 334678899999999986654333322111 1111 1
Q ss_pred cCCCCcEEEEEeeC---CeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEE--EecCCeEEEE
Q 011268 372 SLKSHLAVQVCARK---RKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQI--STGLYHTVVV 446 (489)
Q Consensus 372 ~~~~~~i~~v~~G~---~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i--~~G~~ht~~l 446 (489)
.-.+.+|+.+..-. .+.+++|++|.+--.=...+-....+... .. -..+.. .+..++.+ ..+....+++
T Consensus 687 L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG----~~-~lkl~~-~~d~lv~v~~v~~~~~v~i~ 760 (805)
T PRK05560 687 LREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG----VI-TIKITE-KNGKLVGALPVDDDDEIMLI 760 (805)
T ss_pred CCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc----EE-eeeccC-CCCeEEEEEEecCCCeEEEE
Confidence 12345676665543 25778888887665432221111110000 00 001110 01233332 2345568889
Q ss_pred EcCCCEEEEeCCCCCCCC
Q 011268 447 TDRGRLFGFGDNERAQLG 464 (489)
Q Consensus 447 ~~~G~v~~wG~n~~GqLG 464 (489)
+++|++..+-.++--..|
T Consensus 761 T~~G~~lrf~~~eI~~~g 778 (805)
T PRK05560 761 TDSGKLIRTRVSEISITG 778 (805)
T ss_pred ecCCeEEEEEHHHCCccc
Confidence 999999888776544443
No 57
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=61.79 E-value=2.5e+02 Score=30.90 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe--cCCeEEEEcCCCcEEEEecCCCCC
Q 011268 278 GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGA 355 (489)
Q Consensus 278 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gq 355 (489)
-...++++|++|-|-..-...+. +..+. +. .+..+..+.. ...+.+++|++|++|.+-...--
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~------------~saik-LK-egD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP- 557 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID------------LSTLK-YK-AGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP- 557 (735)
T ss_pred CcceEEEEecCCEEEeccccccc------------hhccC-cC-CCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-
Confidence 45678889999977654322221 11111 11 1123333333 44467889999999999765431
Q ss_pred CCCCCCCCcccce--eeccCCCCcEEEEEeeCC--eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCC
Q 011268 356 LGHGDEIDKTLPE--PLSSLKSHLAVQVCARKR--KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAH 431 (489)
Q Consensus 356 lg~~~~~~~~~p~--~v~~~~~~~i~~v~~G~~--ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~ 431 (489)
.|. ..-.|. .+....+.+|+.+.+... +.+++|+.|...-.=...+-....+.. . . ..++ .+.
T Consensus 558 ~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGK---g-v---i~Lk--~~d 624 (735)
T TIGR01062 558 SAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGK---A-L---INLP--ENA 624 (735)
T ss_pred cCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCe---E-E---EEeC--CCC
Confidence 121 111222 233345667888777643 467888888666554322221111100 0 0 0011 111
Q ss_pred CEEE--EEecC-CeEEEEEcCCCEEEEeCCCCCCCCC
Q 011268 432 HVSQ--ISTGL-YHTVVVTDRGRLFGFGDNERAQLGH 465 (489)
Q Consensus 432 ~v~~--i~~G~-~ht~~l~~~G~v~~wG~n~~GqLG~ 465 (489)
.+.. ...+. .+.++++++|++..+-.++--++|-
T Consensus 625 ~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 625 SVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred EEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 2221 12233 3577899999999998876655543
No 58
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=58.94 E-value=1.3e+02 Score=28.51 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=69.9
Q ss_pred CceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCC-CCCcccC
Q 011268 121 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN-SSFCCGH 198 (489)
Q Consensus 121 ~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n-~~gqlg~ 198 (489)
.-|-++. .||.||.-++. .|.+|+=+..+- +-..+++..... -|.+++..||..|.+-.. .-+.++.
T Consensus 63 ap~dvapapdG~VWft~qg-~gaiGhLdP~tG--ev~~ypLg~Ga~--------Phgiv~gpdg~~Witd~~~aI~R~dp 131 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQG-TGAIGHLDPATG--EVETYPLGSGAS--------PHGIVVGPDGSAWITDTGLAIGRLDP 131 (353)
T ss_pred CccccccCCCCceEEecCc-cccceecCCCCC--ceEEEecCCCCC--------CceEEECCCCCeeEecCcceeEEecC
Confidence 3455666 89999976654 445554322221 122233333222 356666677777766332 2122221
Q ss_pred CCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCC-CCCccCCCCCCCCCCceeecCCCCCCCEEEEEe
Q 011268 199 RDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN-THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA 277 (489)
Q Consensus 199 ~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n-~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~ 277 (489)
... .....|.. .+.+-+.-.+.+++..|+||.-|.+ .+|+|--.......-| .. --
T Consensus 132 kt~-evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfp----aP---------qG 188 (353)
T COG4257 132 KTL-EVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFP----AP---------QG 188 (353)
T ss_pred ccc-ceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeec----cC---------CC
Confidence 111 00111111 2233345567889999999999873 3454421111111001 00 12
Q ss_pred CCCEEEEEEcCCcEEEe
Q 011268 278 GPSYMLAVTGNGVVYSF 294 (489)
Q Consensus 278 G~~~~~~lt~~G~vy~w 294 (489)
+.-.-++.|-+|+||.-
T Consensus 189 ~gpyGi~atpdGsvwya 205 (353)
T COG4257 189 GGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCcceEECCCCcEEEE
Confidence 34567889999999975
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=56.56 E-value=3.7e+02 Score=31.16 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCE-EEEEE--cCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEE-EecCCeEEEE-cCCCc
Q 011268 270 GSVVQIAAGPSY-MLAVT--GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV-SAGDEHVVAL-DSSGY 344 (489)
Q Consensus 270 ~~i~~i~~G~~~-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i-~~g~~h~~~l-t~~G~ 344 (489)
..+.+++....| +++++ .||.|-.|-... -......-+-.......+.++..+ .|+..+.+|+ ++||.
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k-------~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK-------LEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehh-------hhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeE-----EEEEcCCcEEEEEcCCCCCCCCCCCCCCCce
Q 011268 345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKT-----FVLVDTGSVYGFGWMGFGSLGFPDRGVSDKV 419 (489)
Q Consensus 345 vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht-----~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~ 419 (489)
|-..+-+.+ .........-.....-....+++.-+-..+. ++.|+.+.+..|+ ....
T Consensus 1122 v~~~~id~~----~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D--------------~r~~ 1183 (1431)
T KOG1240|consen 1122 VRVLRIDHY----NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD--------------TRMR 1183 (1431)
T ss_pred EEEEEcccc----ccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec--------------chhh
Q ss_pred eccEEcC-cCCCCCEEEEEecCCeEEEEE--cCCCEEEE
Q 011268 420 LRPRILD-SLRAHHVSQISTGLYHTVVVT--DRGRLFGF 455 (489)
Q Consensus 420 ~~P~~v~-~~~~~~v~~i~~G~~ht~~l~--~~G~v~~w 455 (489)
..-..++ .++..-|.++++..+...++. ..|.+-.|
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE
No 60
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=56.45 E-value=2.3e+02 Score=28.74 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=73.2
Q ss_pred CCeEEEEecCc-eeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEE
Q 011268 112 GNQMQITTGRY-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFT 187 (489)
Q Consensus 112 ~~~~~i~~G~~-h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~--~~~~i~~vs~G~~~~~~lt~~G~v~~ 187 (489)
++++.+.--.. +-+++ ++|.++++- ..|.. +...+..+... .+.+|-.+..+.+-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 56777665444 44455 999988873 33332 00011111111 11234455667677999999999998
Q ss_pred EeCCCCCcccCCCCCCceeccEEeccC----CCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceee
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVEAL----KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 263 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~~~----~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i 263 (489)
--..... .-.. .....|...... ....+..+......-+.+..++.++..-.+..-+ +
T Consensus 152 v~n~~~~-~~~~---~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------------i 213 (410)
T PF04841_consen 152 VNNIDEP-VKLR---RLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------------I 213 (410)
T ss_pred EeCcccc-chhh---ccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------------c
Confidence 8433311 0000 000112211111 1111222222222233344445555432221111 2
Q ss_pred cCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEe
Q 011268 264 APLEEVGSVVQIAAG--PSYMLAVTGNGVVYSF 294 (489)
Q Consensus 264 ~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~w 294 (489)
. ...++.+|+.. ..|.++++++|.+|..
T Consensus 214 ~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 214 D---SDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred c---CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 1 12578887776 4677888899999875
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=55.82 E-value=1.6e+02 Score=26.59 Aligned_cols=137 Identities=11% Similarity=0.061 Sum_probs=63.6
Q ss_pred eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCC-eeEEEEc-CCcEEEEeCCCCCccCCC
Q 011268 175 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTI-RGHVHTCGSNTHGQLGHG 252 (489)
Q Consensus 175 ~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~-h~~~Lt~-~G~vy~wG~n~~GqlG~~ 252 (489)
..++...+|.++.|-..... ....+.. ....|..+..... ..++... +|.|+.|-......
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 127 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE------------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC---- 127 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc------------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE----
Confidence 45555668999999654410 1111111 1123455544332 3344444 88898885431111
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeCC-CEEEEEEc-CCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEE
Q 011268 253 DTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 330 (489)
Q Consensus 253 ~~~~~~~p~~i~~~~~~~~i~~i~~G~-~~~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~ 330 (489)
...+... ...|..++... ...++... +|.|+.|-.... ..+..+......|..+.
T Consensus 128 -------~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 128 -------LTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--------------KCVATLTGHTGEVNSVA 184 (289)
T ss_pred -------EEEeccC--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--------------ccceeEecCccccceEE
Confidence 1111111 13466665554 23333333 888888854311 00111111122344444
Q ss_pred ecCC--eEEEEcCCCcEEEEecC
Q 011268 331 AGDE--HVVALDSSGYVYTWGKG 351 (489)
Q Consensus 331 ~g~~--h~~~lt~~G~vy~wG~n 351 (489)
.-.. +.++...+|.++.|-..
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECC
Confidence 4333 45555668888888653
No 62
>PHA03098 kelch-like protein; Provisional
Probab=50.38 E-value=1.5e+02 Score=31.21 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=13.1
Q ss_pred ceeEEeeCCcEEEEeCCC
Q 011268 122 YHTLLISNSSVFSCGSSL 139 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n~ 139 (489)
.|+++.-++++|++|-..
T Consensus 335 ~~~~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGIY 352 (534)
T ss_pred cceEEEECCEEEEEeCCC
Confidence 455555889999999643
No 63
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=46.89 E-value=2.4e+02 Score=28.15 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.3
Q ss_pred ceeEEe-eCCcEEEEeCC
Q 011268 122 YHTLLI-SNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l-~~g~vy~wG~n 138 (489)
.|+++. .+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466666 89999999964
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=45.59 E-value=2.3e+02 Score=25.47 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=67.8
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC--CeeEEEEcCCcEEE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~--~h~~~Lt~~G~vy~ 240 (489)
+|..++... ...++...+|.++.|-..... ....... ....+..+..-. .+.++...+|.|+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC------------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 455554433 344445568999999654311 0111111 111232333322 34555566899999
Q ss_pred EeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC-EEEEEEc-CCcEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS-YMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~-~~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
|-.... .....+.... ..|..+..... ..++... +|.|+.|-..... .+..
T Consensus 78 ~~~~~~-----------~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~ 130 (289)
T cd00200 78 WDLETG-----------ECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--------------CLTT 130 (289)
T ss_pred EEcCcc-----------cceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--------------EEEE
Confidence 854321 1111222111 35666665543 3344444 8888888653211 1111
Q ss_pred cccCCccEEEEEecC-CeEEEEc-CCCcEEEEecC
Q 011268 319 FRRKGIHVVRVSAGD-EHVVALD-SSGYVYTWGKG 351 (489)
Q Consensus 319 ~~~~~~~i~~i~~g~-~h~~~lt-~~G~vy~wG~n 351 (489)
+......|..+.... ...++.. .+|.|+.|-..
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 111122355554444 2333333 38888888653
No 65
>PHA02713 hypothetical protein; Provisional
Probab=44.32 E-value=2.1e+02 Score=30.38 Aligned_cols=11 Identities=9% Similarity=0.540 Sum_probs=9.5
Q ss_pred eCCcEEEEeCC
Q 011268 128 SNSSVFSCGSS 138 (489)
Q Consensus 128 ~~g~vy~wG~n 138 (489)
-+|+||++|..
T Consensus 350 ~~g~IYviGG~ 360 (557)
T PHA02713 350 IDDTIYAIGGQ 360 (557)
T ss_pred ECCEEEEECCc
Confidence 78999999964
No 66
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=43.74 E-value=2.1e+02 Score=30.61 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.5
Q ss_pred EEecCCeEEEEEcCCCEEEEeC
Q 011268 436 ISTGLYHTVVVTDRGRLFGFGD 457 (489)
Q Consensus 436 i~~G~~ht~~l~~~G~v~~wG~ 457 (489)
+.....+..+..-++++|+-|-
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4445667777777899999986
No 67
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=43.04 E-value=20 Score=28.76 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.0
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccc
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTF 42 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f 42 (489)
.+.++|.++|.-||. .++|..|..||..|-.+
T Consensus 3 dvG~~py~ll~piL~--~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 3 DVGDVPYHLLRPILE--KCSPEQLRRIEDNNPHL 34 (109)
T ss_pred ccCCCCHHHHHHHHc--cCCHHHHHHHHHhCCCc
Confidence 467899999999999 77999999999988633
No 68
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=43.01 E-value=3.5e+02 Score=26.92 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=13.4
Q ss_pred CEEEEEEcCCcEEEecCC
Q 011268 280 SYMLAVTGNGVVYSFGSG 297 (489)
Q Consensus 280 ~~~~~lt~~G~vy~wG~n 297 (489)
.|+++...+++||.+|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999864
No 69
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=42.00 E-value=31 Score=21.66 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.3
Q ss_pred CeEEEEcCCCcEEEEecC
Q 011268 334 EHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 334 ~h~~~lt~~G~vy~wG~n 351 (489)
-+.++++.+|.+|+-|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 367899999999999974
No 70
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=41.38 E-value=3.4e+02 Score=26.30 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCEEEEEeCCCEEEEEEcCC-cEEEec
Q 011268 270 GSVVQIAAGPSYMLAVTGNG-VVYSFG 295 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~~G-~vy~wG 295 (489)
.+|+.|..-..+.+++.++- .||.+.
T Consensus 95 ~~I~~V~l~r~riVvvl~~~I~VytF~ 121 (346)
T KOG2111|consen 95 SEIKAVKLRRDRIVVVLENKIYVYTFP 121 (346)
T ss_pred cceeeEEEcCCeEEEEecCeEEEEEcC
Confidence 68999999999999988763 444444
No 71
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.35 E-value=5.7e+02 Score=28.29 Aligned_cols=160 Identities=12% Similarity=0.103 Sum_probs=83.8
Q ss_pred CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEE--ccCCeeEEEEcCCcEEEEeCCCCCcc
Q 011268 172 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQL 249 (489)
Q Consensus 172 G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~--~G~~h~~~Lt~~G~vy~wG~n~~Gql 249 (489)
-...++++|++|-|-..-...+. +.-+..-++..++.+. ....+.+++|++|++|.+-.+.-- .
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~-------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID-------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred CcceEEEEecCCEEEeccccccc-------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 45667888999877654322211 1112222233344443 345568889999999999665432 1
Q ss_pred CCCCCCCCCCceee-cCCCCCCCEEEEEeCCC--EEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccE
Q 011268 250 GHGDTLDRPTPKSI-APLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 326 (489)
Q Consensus 250 G~~~~~~~~~p~~i-~~~~~~~~i~~i~~G~~--~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i 326 (489)
|. ....|... ..+.+.++|+.+.+... +.+++|+.|.++..-.+.+-.... .-..+..+.. +..+
T Consensus 559 GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~R-------aGKgvi~Lk~-~d~l 626 (735)
T TIGR01062 559 AR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNK-------AGKALINLPE-NASV 626 (735)
T ss_pred Cc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCc-------CCeEEEEeCC-CCEE
Confidence 21 22233333 23444578888877643 578888888666543322211100 0011111111 1122
Q ss_pred EEE--EecC-CeEEEEcCCCcEEEEecCCCCCCC
Q 011268 327 VRV--SAGD-EHVVALDSSGYVYTWGKGYCGALG 357 (489)
Q Consensus 327 ~~i--~~g~-~h~~~lt~~G~vy~wG~n~~gqlg 357 (489)
+.+ ..+. .+.+++|++|++..+-.++.-.++
T Consensus 627 v~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~g 660 (735)
T TIGR01062 627 IAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELS 660 (735)
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccC
Confidence 221 2233 357789999999998876544444
No 72
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.46 E-value=6e+02 Score=28.03 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=56.5
Q ss_pred eEEe-eCCcEEEEeCCCCCCcCC------CCC-CC-eeeeeeEeeCC-CCCCEEEEEeCCc-eeEEEEcCCcEEE-----
Q 011268 124 TLLI-SNSSVFSCGSSLCGVLGH------GPE-TT-QCVSFTRINFP-SAAHVVQVSASEN-HAAFVLQSGQVFT----- 187 (489)
Q Consensus 124 ~~~l-~~g~vy~wG~n~~gqLG~------g~~-~~-~~~~p~~~~~~-~~~~i~~vs~G~~-~~~~lt~~G~v~~----- 187 (489)
.++. .|+.+|+|=.+....+-. ... .. .....+.++.. ....|.+|..... +.++|...-.|..
T Consensus 35 NLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~ 114 (717)
T PF10168_consen 35 NLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPR 114 (717)
T ss_pred eeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEecc
Confidence 3444 889999998776544321 010 00 01111222211 2236778776543 3344444444432
Q ss_pred -EeCCCCCcccCCCCCCceeccEEe---ccCCCCCeEEEE-----ccCCeeEEEEcCCcEEEE
Q 011268 188 -CGDNSSFCCGHRDTNRPIFRPRLV---EALKGVPCKQVT-----AGLNFTGFLTIRGHVHTC 241 (489)
Q Consensus 188 -wG~n~~gqlg~~~~~~~~~~p~~v---~~~~~~~i~~V~-----~G~~h~~~Lt~~G~vy~w 241 (489)
||.+...+-|.... .....|.-- ..-....|++|. ....|.++||.|+.+-.+
T Consensus 115 r~g~~~~~~~g~~~i-~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 115 RWGKNGEFEDGKKEI-NCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred ccCccccccCCCcce-eEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 66554333332211 111222111 112244677774 357899999999975444
No 73
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.43 E-value=4.8e+02 Score=26.01 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=59.4
Q ss_pred eecCCCCeE-EEEecC-ceeEEe--eCCc-EEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCc-eeEEEE
Q 011268 107 VETSAGNQM-QITTGR-YHTLLI--SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVL 180 (489)
Q Consensus 107 ~~~~~~~~~-~i~~G~-~h~~~l--~~g~-vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~-~~~~lt 180 (489)
+.....+++ .|..|. .|..+. .||+ +|+.+. .| ....+.+.....+.+|..|.. +.++++
T Consensus 21 iD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg------------~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DG------------TVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TS------------EEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CC------------eEEEEECCcccEEEEEecCCCcceEEEc
Confidence 333334444 566654 366444 6665 888753 23 345677777778889998865 678889
Q ss_pred cCCcEEEEeCCCCCcccCCCCC--Cce-eccE--EeccCCCCCeEEEEccCC---eeEEEEcCCcEEEE
Q 011268 181 QSGQVFTCGDNSSFCCGHRDTN--RPI-FRPR--LVEALKGVPCKQVTAGLN---FTGFLTIRGHVHTC 241 (489)
Q Consensus 181 ~~G~v~~wG~n~~gqlg~~~~~--~~~-~~p~--~v~~~~~~~i~~V~~G~~---h~~~Lt~~G~vy~w 241 (489)
.||+...-+....+++-.-+.. +.+ ..|. ........++..|.+... +.+.+.+.|+||.-
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 9998665554444444432211 100 0010 101112345566654222 45566677888765
No 74
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=33.76 E-value=1e+02 Score=17.92 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.7
Q ss_pred CCEEEEEeCCCEEEEEEcCCcEE
Q 011268 270 GSVVQIAAGPSYMLAVTGNGVVY 292 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~~G~vy 292 (489)
+.|..|++|.....+.|+.+-|-
T Consensus 2 E~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEE
Confidence 57999999999999999887543
No 75
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=32.66 E-value=8e+02 Score=28.06 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=22.5
Q ss_pred CCCeEEEEccCCe--eEEEEcCCcEEEEeC
Q 011268 216 GVPCKQVTAGLNF--TGFLTIRGHVHTCGS 243 (489)
Q Consensus 216 ~~~i~~V~~G~~h--~~~Lt~~G~vy~wG~ 243 (489)
...|.+|+...++ .++++.+|.|+.|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 3468999998888 799999998877753
No 76
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=32.59 E-value=4.6e+02 Score=25.27 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.6
Q ss_pred CeeEEEEcCCcEEEEeCCC
Q 011268 227 NFTGFLTIRGHVHTCGSNT 245 (489)
Q Consensus 227 ~h~~~Lt~~G~vy~wG~n~ 245 (489)
.|++++ -+++||.+|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455554 478999998753
No 77
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=31.98 E-value=1e+02 Score=29.87 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=38.8
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCe--eEEEEcCCcEEEEe
Q 011268 177 AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF--TGFLTIRGHVHTCG 242 (489)
Q Consensus 177 ~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h--~~~Lt~~G~vy~wG 242 (489)
++..+.|+||.|-.... .+...++......+..|.|.+....- .++++++|.||.|-
T Consensus 323 a~gnq~g~v~vwdL~~~---------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN---------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCCC---------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 34467899999964331 22355666666677778888766554 45568899999984
No 78
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.21 E-value=3.6e+02 Score=26.03 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=13.5
Q ss_pred ceeEEeeCCcEEEEeCCC
Q 011268 122 YHTLLISNSSVFSCGSSL 139 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n~ 139 (489)
.|++++.+++||++|-..
T Consensus 116 ~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNR 133 (323)
T ss_pred CceEEEECCEEEEEeCcC
Confidence 455556889999999753
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.67 E-value=2.9e+02 Score=27.76 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=16.0
Q ss_pred eEEEEccCCeeEEE--EcCCcEEEEeC
Q 011268 219 CKQVTAGLNFTGFL--TIRGHVHTCGS 243 (489)
Q Consensus 219 i~~V~~G~~h~~~L--t~~G~vy~wG~ 243 (489)
|..-..|.+-.++. ++|++||.|-.
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEc
Confidence 34444455545555 68999999943
No 80
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=29.69 E-value=9e+02 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCce--eEEEEcCCcEEEEeC
Q 011268 163 AAHVVQVSASENH--AAFVLQSGQVFTCGD 190 (489)
Q Consensus 163 ~~~i~~vs~G~~~--~~~lt~~G~v~~wG~ 190 (489)
+..|.+|+....+ .++++.+|++..|-.
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 3479999998887 899999998877653
No 81
>PHA02790 Kelch-like protein; Provisional
Probab=29.63 E-value=3.9e+02 Score=27.70 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=11.6
Q ss_pred eEEEEcCCcEEEEeCC
Q 011268 176 AAFVLQSGQVFTCGDN 191 (489)
Q Consensus 176 ~~~lt~~G~v~~wG~n 191 (489)
..+..-+|+||+.|-.
T Consensus 356 ~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 356 PAVASINNVIYVIGGH 371 (480)
T ss_pred cEEEEECCEEEEecCc
Confidence 3444568999999864
No 82
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=29.33 E-value=2.5e+02 Score=28.11 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=30.5
Q ss_pred ccCChHHHHHHHhcCCC-CcccccccccccccccccCC
Q 011268 11 EELPSHLIFEILTSGRL-SAVDLAHLELTSKTFGGSHG 47 (489)
Q Consensus 11 ~~lp~~i~~~~l~~~~L-~~~d~~~L~~t~~~f~~~~~ 47 (489)
.+||+|+|..|.- .| ...|++...++||..+.+..
T Consensus 5 s~Lp~dll~~i~~--~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAG--RLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHh--hCCcHHHHHHHHhhhhhHHHhcc
Confidence 5899999999998 77 88899999999998877654
No 83
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=29.31 E-value=15 Score=35.45 Aligned_cols=31 Identities=39% Similarity=0.586 Sum_probs=27.8
Q ss_pred cccCC----hHHHHHHHhcCCCCcccccccccccccc
Q 011268 10 IEELP----SHLIFEILTSGRLSAVDLAHLELTSKTF 42 (489)
Q Consensus 10 ~~~lp----~~i~~~~l~~~~L~~~d~~~L~~t~~~f 42 (489)
+.-|| ++|.+.||. ||++.||.+-|++||-.
T Consensus 75 i~~lP~~gl~hi~e~ils--yld~~sLc~celv~k~W 109 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILS--YLDALSLCACELVCKEW 109 (499)
T ss_pred HHhcccccHHHHHHHHHH--hcchhhhhHHHHHHHHH
Confidence 46789 999999999 99999999999999933
No 84
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=28.62 E-value=31 Score=26.90 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=21.9
Q ss_pred ccccCChHHHHHHHhcCCCCccccccc
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHL 35 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L 35 (489)
....||.+|-..||. +|+-.||..|
T Consensus 71 ~w~~LP~EIk~~Il~--~L~~~dL~~l 95 (97)
T PF09372_consen 71 YWNILPIEIKYKILE--YLSNKDLKKL 95 (97)
T ss_pred chhhCCHHHHHHHHH--cCCHHHHHHH
Confidence 346799999999999 9999999765
No 85
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=28.60 E-value=1.6e+02 Score=29.00 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=70.2
Q ss_pred EEEEeCCceeEEEEcCCcE-EEEeCCCCCcccCCCCCC-------ceeccE-EeccCCCCCeEEEEccCCeeEEEEcCCc
Q 011268 167 VQVSASENHAAFVLQSGQV-FTCGDNSSFCCGHRDTNR-------PIFRPR-LVEALKGVPCKQVTAGLNFTGFLTIRGH 237 (489)
Q Consensus 167 ~~vs~G~~~~~~lt~~G~v-~~wG~n~~gqlg~~~~~~-------~~~~p~-~v~~~~~~~i~~V~~G~~h~~~Lt~~G~ 237 (489)
=+|.+|....++++.+|+- |+-. ..+-...+|.... ....|. .|+.+...+. .+.-..+.++|+.||+
T Consensus 31 Gmi~~g~~~~~~~spdgk~~y~a~-T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~--~~~~~~~~~~ls~dgk 107 (342)
T PF06433_consen 31 GMIDTGFLGNVALSPDGKTIYVAE-TFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA--QVVPYKNMFALSADGK 107 (342)
T ss_dssp EEEEEESSEEEEE-TTSSEEEEEE-EEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----BS--GGGEEE-TTSS
T ss_pred EEeecccCCceeECCCCCEEEEEE-EEEeccccccceeEEEEEecCcCcccceEecCCcchh--eecccccceEEccCCc
Confidence 3688888888889988874 4322 1111111111110 011111 2222222122 2334677788988876
Q ss_pred -EEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEE----------EEEeCCCEEEEEEcCCcEEEecCCCCcccCCCC
Q 011268 238 -VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV----------QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGE 306 (489)
Q Consensus 238 -vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~----------~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~ 306 (489)
+|.+-.. . ..-+-+-.+.. .+++ -.-.|..-...+..||++........|+.-
T Consensus 108 ~~~V~N~T-----------P-a~SVtVVDl~~-~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~--- 171 (342)
T PF06433_consen 108 FLYVQNFT-----------P-ATSVTVVDLAA-KKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA--- 171 (342)
T ss_dssp EEEEEEES-----------S-SEEEEEEETTT-TEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---
T ss_pred EEEEEccC-----------C-CCeEEEEECCC-CceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---
Confidence 5665211 0 01111222221 1221 122344445567777777776555444331
Q ss_pred CCCCcCceEeeccccCCccEE---EEEecCCeEEEEcCCCcEEEEec
Q 011268 307 QHDELQPRAIQTFRRKGIHVV---RVSAGDEHVVALDSSGYVYTWGK 350 (489)
Q Consensus 307 ~~~~~~p~~i~~~~~~~~~i~---~i~~g~~h~~~lt~~G~vy~wG~ 350 (489)
.+... .|......+. .......+.++++-+|+||.--.
T Consensus 172 ----~~~t~--~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 172 ----QKSTK--VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp ----EEEEE--ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred ----Eeecc--ccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 11111 1211111121 12345668888999999998654
No 86
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=28.24 E-value=58 Score=21.42 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=13.5
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|++++.++++|+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 46666699999999965
No 87
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=28.24 E-value=9.6e+02 Score=27.55 Aligned_cols=129 Identities=6% Similarity=0.037 Sum_probs=69.3
Q ss_pred CEEEEE--eCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEec-c-CCCCCeEEEEccCC-----eeEEEEcC
Q 011268 165 HVVQVS--ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE-A-LKGVPCKQVTAGLN-----FTGFLTIR 235 (489)
Q Consensus 165 ~i~~vs--~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~-~-~~~~~i~~V~~G~~-----h~~~Lt~~ 235 (489)
.+.++. ....+.+++|+.|++|..=...-........+.+.. ..+. . .++.+|+.+.+-.. +.+++|++
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~--nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~ 630 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLD--EIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDS 630 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHH--HhhhccCCCCCeEEEEEEeccCCCCCEEEEEECC
Confidence 444443 345667889999999977543322221111111111 1111 1 13566777766432 46888999
Q ss_pred CcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-----CEEEEEEcCCcEEEecCCCCcccC
Q 011268 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLG 303 (489)
Q Consensus 236 G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~vy~wG~n~~gqlG 303 (489)
|.|.-.-...+-. ... ....-.+.+...++.+.... .+.+++|++|.+..+-.+.-...|
T Consensus 631 G~VKrt~L~ef~~-------~r~-~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 631 GGIKKTSLDKFVT-------NYT-KLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred CeEEEEehhhccc-------ccc-ceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 9888764332210 111 13333344445676655433 458999999988877655443333
No 88
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=27.68 E-value=6e+02 Score=25.02 Aligned_cols=57 Identities=19% Similarity=0.036 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEE
Q 011268 385 KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGF 455 (489)
Q Consensus 385 ~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~w 455 (489)
..+.++.+.+|.||++-... |++ ..-..+. .......-..-+.+.++.+.||+||+|
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~-----------~~~~~~~--~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSF-----------VARLKTD--GSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCE-----------EEEEEcC--CCccccCCEEECCEEEEEeCCceEEEe
Confidence 34667778899999985322 111 0000010 000111212234578888999999987
No 89
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=27.67 E-value=62 Score=21.13 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=12.1
Q ss_pred CCeEEEEEcCCcEEEEE
Q 011268 385 KRKTFVLVDTGSVYGFG 401 (489)
Q Consensus 385 ~~ht~~lt~~G~vy~wG 401 (489)
..|+++...+++||.+|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 46888888889999999
No 90
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.27 E-value=1.2e+02 Score=22.86 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=27.5
Q ss_pred eccEEeccCCCCCeEEEEcc-CCeeEEEEcCCcEEEEeCCCCCcc
Q 011268 206 FRPRLVEALKGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQL 249 (489)
Q Consensus 206 ~~p~~v~~~~~~~i~~V~~G-~~h~~~Lt~~G~vy~wG~n~~Gql 249 (489)
..|..+..- ..=..|+|. ..-.++|++||.+|.-+--+.|++
T Consensus 7 t~Pa~i~~~--~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASINLG--QTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEETT---SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccccc--ccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 345555432 233789999 888899999999999887556653
No 91
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.83 E-value=5.2e+02 Score=24.05 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=40.6
Q ss_pred eEEEEecCceeEEe---eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEE
Q 011268 114 QMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTC 188 (489)
Q Consensus 114 ~~~i~~G~~h~~~l---~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~--~i~~vs~G~~~~~~lt~~G~v~~w 188 (489)
+-.|..-...++++ -|.++-+|-+-. ..+.|+++.... .|.+|.......++=+.||++-.+
T Consensus 104 VNtV~fNeesSVv~SgsfD~s~r~wDCRS-------------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 104 VNTVRFNEESSVVASGSFDSSVRLWDCRS-------------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTY 170 (307)
T ss_pred eeEEEecCcceEEEeccccceeEEEEccc-------------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEE
Confidence 44455555555555 466677776532 245667665433 688888888888888889987666
Q ss_pred e
Q 011268 189 G 189 (489)
Q Consensus 189 G 189 (489)
-
T Consensus 171 d 171 (307)
T KOG0316|consen 171 D 171 (307)
T ss_pred E
Confidence 4
No 92
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.66 E-value=6.4e+02 Score=24.68 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=38.0
Q ss_pred EEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeE--EEEEcCCcEEEEEc
Q 011268 338 ALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKT--FVLVDTGSVYGFGW 402 (489)
Q Consensus 338 ~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht--~~lt~~G~vy~wG~ 402 (489)
+..+.|+||+|-... .++...++......+..|.+.+....-+ +++.+++.||.|-+
T Consensus 324 ~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 346789999998632 2222456666666666777777665444 45678899999864
No 93
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.00 E-value=1.3e+02 Score=22.61 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=25.6
Q ss_pred CCCCEEEEEeC-CceeEEEEcCCcEEEEeCCCCCcc
Q 011268 162 SAAHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCC 196 (489)
Q Consensus 162 ~~~~i~~vs~G-~~~~~~lt~~G~v~~wG~n~~gql 196 (489)
....=..|+|. ....++|+.||.+|.-+--+.|.+
T Consensus 14 ~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 14 LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 33456789999 899999999999999886555543
No 94
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=24.74 E-value=1.3e+02 Score=17.25 Aligned_cols=17 Identities=47% Similarity=0.726 Sum_probs=12.6
Q ss_pred eEEEEcCCCcEEEEecC
Q 011268 335 HVVALDSSGYVYTWGKG 351 (489)
Q Consensus 335 h~~~lt~~G~vy~wG~n 351 (489)
|.++++.+|++|+.-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56778888888886543
No 95
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=24.57 E-value=4e+02 Score=21.91 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=36.2
Q ss_pred CEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEE
Q 011268 271 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 347 (489)
Q Consensus 271 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~ 347 (489)
+.+++-|-..+-+.+..+|.|-.--. ..+...-.++...... .|.=-.+-....+++++.|+||+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~----------~~~~~~ile~~s~~~g--~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRD----------ESSSFTILEIIAVAVG--VVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccC----------CCCcceEEEEEeccCC--EEEEEEcccceEEEECCCCCEEE
Confidence 56777777656677778888764211 1111222222222211 22222334456788999999997
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=23.01 E-value=1.1e+03 Score=26.47 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred ecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCccc
Q 011268 119 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG 197 (489)
Q Consensus 119 ~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg 197 (489)
.++...+++ .+|+ |..=++..|-.-.=........|.-+.. ....|..+++-..|++.-++++.|-..--.+ +
T Consensus 13 t~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps----~ 86 (933)
T KOG1274|consen 13 TGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS----G 86 (933)
T ss_pred cCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC----C
Q ss_pred CCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe
Q 011268 198 HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA 277 (489)
Q Consensus 198 ~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~ 277 (489)
..+......+- ..++..|..++...++=.+|-.|-.- ...+...-..+........-++...
T Consensus 87 ~~~~iL~Rftl-------p~r~~~v~g~g~~iaagsdD~~vK~~-----------~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 87 EEDTILARFTL-------PIRDLAVSGSGKMIAAGSDDTAVKLL-----------NLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred Cccceeeeeec-------cceEEEEecCCcEEEeecCceeEEEE-----------eccccchheeecccCCceeeeeEcC
Q ss_pred CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccE-EEEEe------cCCeEEEEcCCCcEEEEec
Q 011268 278 GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV-VRVSA------GDEHVVALDSSGYVYTWGK 350 (489)
Q Consensus 278 G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i-~~i~~------g~~h~~~lt~~G~vy~wG~ 350 (489)
-..+..+.+.+|+|+.| +..+...-..+.........+ ..|.+ -..|.++.-.++.|-.+-.
T Consensus 149 ~~~fLAvss~dG~v~iw-----------~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIW-----------DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred CCCEEEEEecCceEEEE-----------EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Q ss_pred CCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEE
Q 011268 351 GYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGF 400 (489)
Q Consensus 351 n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~w 400 (489)
+. ........+..+..- ..+.+.+-...+..+-+.+|+|..|
T Consensus 218 ~~------we~~f~Lr~~~~ss~--~~~~~wsPnG~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 218 KG------WELQFKLRDKLSSSK--FSDLQWSPNGKYIAASTLDGQILVW 259 (933)
T ss_pred CC------ceeheeecccccccc--eEEEEEcCCCcEEeeeccCCcEEEE
No 97
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=22.84 E-value=4.1e+02 Score=21.45 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEE
Q 011268 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~ 240 (489)
+.+++-|-....+-+..+|.|-.-+... ....--.+.......|.--++-....+++++.|+||+
T Consensus 1 R~~~Ly~~~~~~L~i~~~g~V~gt~~~~-----------~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~ 65 (122)
T PF00167_consen 1 RHVQLYCRTGYFLQINPNGTVDGTGDDN-----------SPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGRLYG 65 (122)
T ss_dssp EEEEEEETTSEEEEEETTSBEEEESSTT-----------STTGEEEEEEEETTEEEEEETTTTEEEEEBTTSBEEE
T ss_pred CCEEEEECCCeEEEECCCCeEeCCCCcC-----------cceeEEEEEeccceEEEEEEecceEEEEECCCCeEcc
No 98
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.64 E-value=3.3e+02 Score=27.28 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=45.2
Q ss_pred CeEEEEccCCe---eEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEe
Q 011268 218 PCKQVTAGLNF---TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294 (489)
Q Consensus 218 ~i~~V~~G~~h---~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~w 294 (489)
.+..+.+|..+ .+++..+|++..|-.+.+- .++. ....+.+|.--.....|++..|.||.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt--------------~l~~--~~~~~~DIi~~kGkfYAvD~~G~l~~i 224 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK--------------ALKQ--MGYHFSDIIVHKGQTYALDSIGIVYWI 224 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeee--------------EccC--CCceeeEEEEECCEEEEEcCCCeEEEE
Confidence 34557777776 7777889999999533222 2221 225799999988889999999999987
Q ss_pred c
Q 011268 295 G 295 (489)
Q Consensus 295 G 295 (489)
.
T Consensus 225 ~ 225 (373)
T PLN03215 225 N 225 (373)
T ss_pred e
Confidence 6
No 99
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=22.31 E-value=2.4e+02 Score=26.34 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=38.9
Q ss_pred EEecC-ceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEE-EEEeCCceeEEEEcCCcEEEEeCCC
Q 011268 117 ITTGR-YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVV-QVSASENHAAFVLQSGQVFTCGDNS 192 (489)
Q Consensus 117 i~~G~-~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~-~vs~G~~~~~~lt~~G~v~~wG~n~ 192 (489)
++.++ +-+..+ .||+|++.|-....-...-.... ..+.+..++...... ......+-.+.|..+|+||.++.+.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~--~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG--PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCcccccCCcc--CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 56676 445555 99999999965411111100000 011112222111111 1223445688999999999998765
No 100
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=22.07 E-value=33 Score=18.30 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=10.7
Q ss_pred cccccccccccccc
Q 011268 31 DLAHLELTSKTFGG 44 (489)
Q Consensus 31 d~~~L~~t~~~f~~ 44 (489)
.++++|.|+|+|.-
T Consensus 2 nilhicvtskwfni 15 (24)
T PF08053_consen 2 NILHICVTSKWFNI 15 (24)
T ss_pred ceEEEEEeeeeEec
Confidence 36778889998864
No 101
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=21.77 E-value=32 Score=34.52 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=35.4
Q ss_pred ccCChHHHHHHHhcCCCCcccccccccccccccccC-CCCCccccchh
Q 011268 11 EELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH-GLYPQKFRSLV 57 (489)
Q Consensus 11 ~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~-~~~~~~~~~~~ 57 (489)
-.|||+++..+|. +||.+.+--=...|++|..++ +-..|....+.
T Consensus 73 ~~LPpEl~lkvFS--~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~ 118 (483)
T KOG4341|consen 73 RSLPPELLLKVFS--MLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLF 118 (483)
T ss_pred ccCCHHHHHHHHH--HHhHHHHHHHHHHHHHhhhhhhccccceeeehh
Confidence 4799999999999 999998888889999999887 33555433333
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=21.57 E-value=3.5e+02 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=22.2
Q ss_pred cCCCCCEEEEEecCC----eEEEEEcCCCEEEEe
Q 011268 427 SLRAHHVSQISTGLY----HTVVVTDRGRLFGFG 456 (489)
Q Consensus 427 ~~~~~~v~~i~~G~~----ht~~l~~~G~v~~wG 456 (489)
.+.+....+|+||-. .+++|+..|.+.-|-
T Consensus 214 ~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 214 NLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred ccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 445567888999976 899999977665554
No 103
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.91 E-value=8.3e+02 Score=24.24 Aligned_cols=259 Identities=10% Similarity=0.047 Sum_probs=114.2
Q ss_pred EEEecCceeEEe-eC-CcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCc-e--------eEEEEcCCc
Q 011268 116 QITTGRYHTLLI-SN-SSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-H--------AAFVLQSGQ 184 (489)
Q Consensus 116 ~i~~G~~h~~~l-~~-g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~-~--------~~~lt~~G~ 184 (489)
.|..|...-.++ .| ..+|+.-. .+-++-.|...+ ..+.+.......+..|..|.. + .++|+.||+
T Consensus 42 ~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~d---~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk 117 (352)
T TIGR02658 42 MTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRTD---YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK 117 (352)
T ss_pred EEEccCCCceeECCCCCEEEEEec-cccccccCCCCC---EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC
Confidence 466775443447 44 45666543 334444444444 334455555556666766554 3 889999997
Q ss_pred -EEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceee
Q 011268 185 -VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 263 (489)
Q Consensus 185 -v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i 263 (489)
+|..-.+....+..-+... ...-..|+.. +.+ .-+..+....+++..||+.........|..- ....++
T Consensus 118 ~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~-~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-------~~~~~v 187 (352)
T TIGR02658 118 TLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCY-HIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-------IKPTEV 187 (352)
T ss_pred EEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCc-EEEEecCCccEEEeecCceEEEEecCCCceE-------Eeeeee
Confidence 7766444322222211110 0011111111 111 1122333333444555655554444433311 111111
Q ss_pred -cC---CCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEE
Q 011268 264 -AP---LEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL 339 (489)
Q Consensus 264 -~~---~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~l 339 (489)
.. +....+ ..+.....-++++.+|.||..-.... ......+..+..+. .+-....-|...-+++
T Consensus 188 f~~~~~~v~~rP--~~~~~dg~~~~vs~eG~V~~id~~~~-------~~~~~~~~~~~~~~---~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 188 FHPEDEYLINHP--AYSNKSGRLVWPTYTGKIFQIDLSSG-------DAKFLPAIEAFTEA---EKADGWRPGGWQQVAY 255 (352)
T ss_pred ecCCccccccCC--ceEcCCCcEEEEecCCeEEEEecCCC-------cceecceeeecccc---ccccccCCCcceeEEE
Confidence 00 000122 22444567788888899998642211 01111222221111 0111234455555778
Q ss_pred cCC-CcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee-CCeEEEEEcCCcEEEEEcC
Q 011268 340 DSS-GYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVLVDTGSVYGFGWM 403 (489)
Q Consensus 340 t~~-G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~ht~~lt~~G~vy~wG~n 403 (489)
+.+ +++|+--.+. +. |. .......-..+..-....+..|..| .-+.++++.||+.+.+-.|
T Consensus 256 ~~dg~~lyV~~~~~-~~-~t-hk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 256 HRARDRIYLLADQR-AK-WT-HKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred cCCCCEEEEEecCC-cc-cc-ccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeC
Confidence 755 4777743210 00 00 0001111122332233345556655 4568899999985555443
No 104
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.76 E-value=1.2e+03 Score=25.94 Aligned_cols=126 Identities=7% Similarity=0.007 Sum_probs=66.4
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCC------eeEEEEcCCcEEEEe
Q 011268 169 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN------FTGFLTIRGHVHTCG 242 (489)
Q Consensus 169 vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~------h~~~Lt~~G~vy~wG 242 (489)
++.+..+.+++|+.|++|.+-...-...|....+.+ ....+..-++.+|+.+.+-.. +.+++|++|.+.-.-
T Consensus 538 ~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~Gv~--Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~ 615 (738)
T TIGR01061 538 IANTTDQILIFTSLGNIINIPVHKLADIRWKDLGEH--LSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRIE 615 (738)
T ss_pred EecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCCcC--hhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEeE
Confidence 344566789999999999987655443343332211 112233334566777665432 478889999766553
Q ss_pred CCCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCEEEEEEcCCcEEEecCCCCccc
Q 011268 243 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCL 302 (489)
Q Consensus 243 ~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~vy~wG~n~~gql 302 (489)
...+-.. .+ ..-..+-.+.+...++.+ ..+....+++|.+|.+..+-.++....
T Consensus 616 l~e~~~~-r~-----~kGv~~ikLk~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~dI~~~ 671 (738)
T TIGR01061 616 LTELNIK-RN-----SKATLCIKLKDKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVV 671 (738)
T ss_pred HHHhccc-cC-----CCceEEEeccCCCcEEEEEEeCCCCEEEEEECCCeEEEEEHHHCCcc
Confidence 3222111 00 011111112111233322 235567899999998887655443333
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=20.21 E-value=4.4e+02 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=16.4
Q ss_pred cCCeEEEEEcCCCEEEEeCCCC
Q 011268 439 GLYHTVVVTDRGRLFGFGDNER 460 (489)
Q Consensus 439 G~~ht~~l~~~G~v~~wG~n~~ 460 (489)
|.-.+.+...+|++.+-|.|++
T Consensus 90 gsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred ccEEEEEecCccCeEEecCCCc
Confidence 4455667778888888888875
Done!