Query 011268
Match_columns 489
No_of_seqs 544 out of 2135
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.3E-74 4.3E-79 585.2 45.4 367 107-481 11-379 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 2.9E-72 1E-76 565.0 35.3 364 118-489 7-375 (389)
3 1a12_A RCC1, regulator of chro 100.0 1.4E-69 4.7E-74 550.3 39.3 354 116-480 12-386 (413)
4 3mvd_K Regulator of chromosome 100.0 9.9E-69 3.4E-73 546.0 41.5 354 111-479 23-394 (423)
5 3of7_A Regulator of chromosome 100.0 3.2E-68 1.1E-72 548.6 36.8 360 113-480 11-427 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 4.6E-68 1.6E-72 534.4 34.2 370 73-450 13-388 (389)
7 1a12_A RCC1, regulator of chro 100.0 7.6E-66 2.6E-70 522.7 39.1 370 73-452 20-412 (413)
8 4d9s_A UVB-resistance protein 100.0 2.1E-64 7.3E-69 510.3 39.2 320 163-489 15-335 (406)
9 3mvd_K Regulator of chromosome 100.0 1.5E-63 5.3E-68 507.7 42.0 363 73-451 36-420 (423)
10 3of7_A Regulator of chromosome 100.0 5.9E-63 2E-67 509.3 37.0 361 78-448 27-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 8.5E-53 2.9E-57 403.2 28.6 254 111-453 23-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 4.1E-52 1.4E-56 398.5 28.6 251 131-466 3-253 (282)
13 2ovr_B FBW7, F-BOX/WD repeat p 99.1 1E-06 3.5E-11 88.9 36.8 361 9-459 18-391 (445)
14 1p22_A F-BOX/WD-repeat protein 98.9 2.5E-06 8.7E-11 85.8 32.7 377 9-460 10-415 (435)
15 3v7d_B Cell division control p 98.8 2.2E-05 7.5E-10 79.3 33.9 370 9-459 14-421 (464)
16 1fs1_A SKP2 F-BOX, cyclin A/CD 97.4 3.8E-05 1.3E-09 52.3 1.1 37 8-46 7-43 (53)
17 3l2o_B F-box only protein 4; s 96.7 6.7E-05 2.3E-09 69.6 -3.8 36 9-46 4-39 (312)
18 1p22_A F-BOX/WD-repeat protein 96.5 0.74 2.5E-05 45.3 32.7 229 165-457 135-363 (435)
19 4gbf_A Phikz131; 7-bladed beta 96.3 0.0076 2.6E-07 53.8 6.6 70 165-248 310-379 (400)
20 4gbf_A Phikz131; 7-bladed beta 96.1 0.011 3.8E-07 52.8 6.6 71 217-301 309-379 (400)
21 2ovr_B FBW7, F-BOX/WD repeat p 95.3 2.4 8.1E-05 41.7 36.5 226 113-403 161-390 (445)
22 1gxr_A ESG1, transducin-like e 95.1 2 6.9E-05 39.7 31.4 277 118-460 8-297 (337)
23 2zwa_A Leucine carboxyl methyl 94.7 2.9 9.9E-05 44.2 21.3 104 226-350 441-558 (695)
24 1k3i_A Galactose oxidase precu 94.6 5.1 0.00017 41.9 25.7 72 334-407 458-534 (656)
25 2e31_A FBS1, F-box only protei 94.3 0.016 5.6E-07 54.2 2.1 50 8-68 49-99 (297)
26 1k3i_A Galactose oxidase precu 93.5 8.3 0.00028 40.3 21.6 73 385-462 457-534 (656)
27 3no0_A DNA gyrase subunit A; D 93.4 4.8 0.00016 37.1 21.6 236 175-464 3-251 (276)
28 4aez_A CDC20, WD repeat-contai 92.7 7.4 0.00025 37.4 26.7 148 166-351 96-247 (401)
29 2zwa_A Leucine carboxyl methyl 91.7 2.6 9E-05 44.6 14.9 19 279-297 598-616 (695)
30 3k26_A Polycomb protein EED; W 91.6 8.6 0.00029 35.8 29.9 303 112-457 19-364 (366)
31 3odt_A Protein DOA1; ubiquitin 91.4 8.1 0.00028 35.1 33.5 267 112-459 19-296 (313)
32 3v7d_B Cell division control p 89.7 16 0.00054 35.6 34.1 240 112-403 163-420 (464)
33 2ast_B S-phase kinase-associat 89.1 0.1 3.5E-06 49.7 1.0 36 8-45 7-42 (336)
34 3sfz_A APAF-1, apoptotic pepti 88.8 35 0.0012 38.3 25.0 222 174-457 1016-1247(1249)
35 1pgu_A Actin interacting prote 88.7 22 0.00075 35.9 30.6 150 270-457 447-612 (615)
36 3mmy_A MRNA export factor; mRN 88.5 15 0.00053 33.9 24.7 191 163-403 39-246 (368)
37 4aez_A CDC20, WD repeat-contai 88.4 18 0.00062 34.6 33.2 266 117-459 99-380 (401)
38 3jrp_A Fusion protein of prote 88.3 16 0.00056 34.0 29.3 199 164-403 56-286 (379)
39 1gxr_A ESG1, transducin-like e 88.0 16 0.00053 33.4 32.6 265 114-455 54-333 (337)
40 4a11_B DNA excision repair pro 87.8 18 0.00063 34.0 29.4 207 164-404 44-276 (408)
41 3uc1_A DNA gyrase subunit A; D 87.8 18 0.00063 34.0 23.6 218 222-460 49-280 (327)
42 1sq9_A Antiviral protein SKI8; 86.2 23 0.00078 33.4 22.7 257 164-459 17-322 (397)
43 3no0_A DNA gyrase subunit A; D 84.8 23 0.0008 32.4 23.3 207 173-410 35-252 (276)
44 3zwl_B Eukaryotic translation 84.3 26 0.00087 32.4 32.0 198 113-350 34-247 (369)
45 4g56_B MGC81050 protein; prote 83.0 31 0.0011 32.4 27.8 187 165-403 141-342 (357)
46 4a11_B DNA excision repair pro 83.0 31 0.0011 32.4 32.8 301 112-463 44-369 (408)
47 1sq9_A Antiviral protein SKI8; 82.8 32 0.0011 32.3 29.3 250 112-402 17-320 (397)
48 3mmy_A MRNA export factor; mRN 82.6 30 0.001 31.9 31.5 193 111-352 39-247 (368)
49 3vl1_A 26S proteasome regulato 82.5 34 0.0012 32.5 32.3 227 172-459 108-365 (420)
50 3uc1_A DNA gyrase subunit A; D 81.8 35 0.0012 32.1 27.7 223 169-410 49-285 (327)
51 1r5m_A SIR4-interacting protei 81.0 37 0.0013 32.0 32.4 235 113-402 110-359 (425)
52 3ii7_A Kelch-like protein 7; p 80.9 24 0.00081 32.3 13.2 18 122-139 48-65 (306)
53 3jro_A Fusion protein of prote 79.1 68 0.0023 33.8 25.5 157 164-352 54-238 (753)
54 3gre_A Serine/threonine-protei 79.0 47 0.0016 31.8 23.9 201 112-351 64-291 (437)
55 3mkq_A Coatomer beta'-subunit; 78.0 72 0.0025 33.5 24.9 230 165-459 15-259 (814)
56 2xyi_A Probable histone-bindin 77.8 52 0.0018 31.7 25.8 198 175-402 196-408 (430)
57 2xyi_A Probable histone-bindin 77.3 53 0.0018 31.6 21.0 196 128-351 202-409 (430)
58 3i2n_A WD repeat-containing pr 77.0 45 0.0015 30.6 26.4 194 113-352 67-291 (357)
59 4ery_A WD repeat-containing pr 77.0 43 0.0015 30.3 29.1 187 113-351 25-222 (312)
60 3mkq_A Coatomer beta'-subunit; 76.7 78 0.0027 33.2 29.9 229 114-403 16-258 (814)
61 2p1m_B Transport inhibitor res 75.7 0.59 2E-05 48.2 0.2 35 9-45 5-40 (594)
62 3no2_A Uncharacterized protein 75.7 46 0.0016 30.1 19.6 164 164-358 88-267 (276)
63 3sjl_D Methylamine dehydrogena 75.0 62 0.0021 31.2 17.3 269 157-454 63-348 (386)
64 1wp5_A Topoisomerase IV; broke 74.7 56 0.0019 30.6 26.4 227 168-410 45-283 (323)
65 3p6j_A De novo designed beta-t 73.2 36 0.0012 27.6 10.4 107 216-347 29-138 (142)
66 1suu_A DNA gyrase subunit A; t 72.3 62 0.0021 30.0 26.4 221 169-406 54-285 (312)
67 1wp5_A Topoisomerase IV; broke 72.1 65 0.0022 30.1 25.7 224 221-465 45-283 (323)
68 3k26_A Polycomb protein EED; W 71.5 61 0.0021 29.6 30.2 209 163-404 18-260 (366)
69 3sfz_A APAF-1, apoptotic pepti 71.5 1.3E+02 0.0045 33.5 22.9 189 226-460 1015-1208(1249)
70 2pm9_A Protein WEB1, protein t 71.3 69 0.0023 30.1 23.3 161 218-403 69-248 (416)
71 1yfq_A Cell cycle arrest prote 71.1 61 0.0021 29.4 29.0 204 165-404 13-225 (342)
72 3l6v_A GYRA, DNA gyrase subuni 69.9 79 0.0027 30.2 27.8 235 158-410 40-322 (370)
73 1xip_A Nucleoporin NUP159; bet 69.5 62 0.0021 31.2 13.0 64 219-296 90-153 (388)
74 3ogk_B Coronatine-insensitive 67.7 1.3 4.3E-05 45.7 0.5 33 10-44 13-46 (592)
75 2vpj_A Kelch-like protein 12; 67.3 72 0.0025 28.8 14.9 18 122-139 55-72 (301)
76 3odt_A Protein DOA1; ubiquitin 67.3 68 0.0023 28.5 31.3 228 165-459 20-255 (313)
77 1zi0_A DNA gyrase subunit A; b 65.1 87 0.003 28.9 24.8 219 222-462 49-280 (307)
78 1zgk_A Kelch-like ECH-associat 63.9 50 0.0017 30.2 10.9 17 122-138 63-79 (308)
79 3vl1_A 26S proteasome regulato 63.7 99 0.0034 29.1 31.8 194 164-404 140-365 (420)
80 1q7f_A NHL, brain tumor CG1071 62.5 84 0.0029 27.8 21.0 15 388-402 211-225 (286)
81 4g56_B MGC81050 protein; prote 62.0 1E+02 0.0035 28.7 31.9 235 165-462 96-346 (357)
82 2xn4_A Kelch-like protein 2; s 61.9 91 0.0031 28.1 12.8 17 122-138 54-70 (302)
83 2pm9_A Protein WEB1, protein t 61.6 1.1E+02 0.0036 28.7 25.0 244 164-461 68-339 (416)
84 3jro_A Fusion protein of prote 61.1 1.6E+02 0.0056 30.8 25.6 198 165-404 11-238 (753)
85 1pgu_A Actin interacting prote 61.0 1.4E+02 0.0046 29.8 31.9 230 172-460 308-573 (615)
86 1q7f_A NHL, brain tumor CG1071 59.4 95 0.0032 27.5 22.3 16 335-350 210-225 (286)
87 3i2n_A WD repeat-containing pr 58.4 1.1E+02 0.0037 27.8 33.1 197 163-403 65-290 (357)
88 2aq5_A Coronin-1A; WD40 repeat 56.7 1.3E+02 0.0044 28.2 23.6 154 222-402 40-205 (402)
89 3zwl_B Eukaryotic translation 55.7 1.2E+02 0.0041 27.5 26.6 60 225-296 186-247 (369)
90 1xip_A Nucleoporin NUP159; bet 55.6 1.1E+02 0.0038 29.4 11.8 65 272-351 90-154 (388)
91 3jrp_A Fusion protein of prote 54.7 1.3E+02 0.0044 27.5 29.8 241 165-458 13-286 (379)
92 1yfq_A Cell cycle arrest prote 53.4 1.3E+02 0.0044 27.1 31.2 246 113-402 13-280 (342)
93 4gqb_B Methylosome protein 50; 52.5 1.5E+02 0.005 27.5 31.6 231 165-458 84-330 (344)
94 1suu_A DNA gyrase subunit A; t 52.3 1.5E+02 0.005 27.5 28.5 263 174-460 9-284 (312)
95 1zvt_A Topoisomerase IV subuni 51.8 1.3E+02 0.0045 26.9 12.1 124 169-303 40-168 (256)
96 3f3f_A Nucleoporin SEH1; struc 51.3 1.3E+02 0.0046 26.7 30.1 119 113-244 13-142 (351)
97 3vu4_A KMHSV2; beta-propeller 51.2 1.5E+02 0.0052 27.4 22.6 158 270-459 101-271 (355)
98 3fvz_A Peptidyl-glycine alpha- 50.7 1.5E+02 0.0051 27.1 23.2 21 172-192 24-44 (329)
99 3gre_A Serine/threonine-protei 50.5 1.7E+02 0.0058 27.7 18.9 160 111-297 111-291 (437)
100 1zi0_A DNA gyrase subunit A; b 49.6 1.6E+02 0.0054 27.1 28.3 223 169-409 49-282 (307)
101 3bws_A Protein LP49; two-domai 49.6 1.7E+02 0.0059 27.5 19.9 27 165-191 171-199 (433)
102 2aq5_A Coronin-1A; WD40 repeat 48.6 1.7E+02 0.006 27.3 28.1 153 169-351 40-206 (402)
103 1erj_A Transcriptional repress 48.4 1.8E+02 0.0061 27.3 28.2 203 166-402 126-339 (393)
104 1r5m_A SIR4-interacting protei 48.0 1.7E+02 0.0059 27.1 30.4 239 165-459 110-361 (425)
105 4aow_A Guanine nucleotide-bind 44.2 1.8E+02 0.006 26.1 23.1 241 111-400 86-333 (340)
106 4ggc_A P55CDC, cell division c 43.9 1.7E+02 0.0058 25.8 29.2 137 123-296 37-179 (318)
107 1k8k_C P40, ARP2/3 complex 41 43.8 1.9E+02 0.0064 26.3 32.8 207 165-403 54-273 (372)
108 3l6v_A GYRA, DNA gyrase subuni 43.6 2.2E+02 0.0075 27.0 26.1 127 221-358 52-186 (370)
109 4gqb_B Methylosome protein 50; 43.5 2E+02 0.0069 26.5 30.0 227 114-402 85-329 (344)
110 3p6j_A De novo designed beta-t 41.7 1.4E+02 0.0047 24.1 13.1 106 270-399 30-138 (142)
111 4gga_A P55CDC, cell division c 41.7 2.3E+02 0.0079 26.7 31.9 138 122-296 116-259 (420)
112 4e54_B DNA damage-binding prot 41.1 2.4E+02 0.0082 26.8 21.4 293 111-455 119-426 (435)
113 3fvz_A Peptidyl-glycine alpha- 41.1 2.1E+02 0.0071 26.0 19.9 16 387-402 295-310 (329)
114 3q7x_A De novo designed beta-t 41.1 97 0.0033 24.6 7.4 103 168-294 10-114 (132)
115 1zvt_A Topoisomerase IV subuni 38.0 2.2E+02 0.0074 25.4 14.7 121 330-463 41-167 (256)
116 4gga_A P55CDC, cell division c 37.4 2.7E+02 0.0092 26.2 26.7 141 174-351 116-260 (420)
117 3ei3_B DNA damage-binding prot 36.4 2.6E+02 0.0088 25.7 28.5 191 112-352 74-282 (383)
118 2woz_A Kelch repeat and BTB do 34.9 74 0.0025 29.0 6.8 17 226-243 150-166 (318)
119 4asc_A Kelch repeat and BTB do 34.3 1.3E+02 0.0046 27.2 8.5 17 122-138 141-157 (315)
120 1zvu_A Topoisomerase IV subuni 33.1 4.1E+02 0.014 27.7 12.2 123 170-303 511-638 (716)
121 3lrv_A PRE-mRNA-splicing facto 32.9 2.8E+02 0.0096 25.1 18.4 233 173-463 48-285 (343)
122 2uvk_A YJHT; unknown function, 32.1 1.6E+02 0.0056 27.1 8.9 18 226-244 110-127 (357)
123 3vgz_A Uncharacterized protein 31.3 2.9E+02 0.0098 24.8 28.2 18 441-458 316-334 (353)
124 4asc_A Kelch repeat and BTB do 29.5 89 0.003 28.4 6.4 17 122-138 91-107 (315)
125 2xn4_A Kelch-like protein 2; s 28.4 2.1E+02 0.0072 25.5 8.7 17 122-138 101-117 (302)
126 3no2_A Uncharacterized protein 28.2 3.1E+02 0.011 24.2 26.7 164 270-465 88-267 (276)
127 4ery_A WD repeat-containing pr 26.1 3.4E+02 0.012 23.9 27.5 187 165-402 25-221 (312)
128 2woz_A Kelch repeat and BTB do 25.9 2.2E+02 0.0075 25.7 8.4 17 122-138 102-118 (318)
129 1k8k_C P40, ARP2/3 complex 41 25.8 3.7E+02 0.013 24.2 29.2 206 218-459 54-274 (372)
130 3f3f_A Nucleoporin SEH1; struc 25.2 3.5E+02 0.012 23.7 25.0 78 111-192 57-143 (351)
131 3ow8_A WD repeat-containing pr 24.7 3.8E+02 0.013 24.1 26.3 103 271-401 208-318 (321)
132 3q7x_A De novo designed beta-t 24.2 2.6E+02 0.009 22.0 9.0 103 220-347 9-113 (132)
133 3ii7_A Kelch-like protein 7; p 23.2 1.2E+02 0.004 27.4 5.9 17 122-138 94-110 (306)
134 1zvu_A Topoisomerase IV subuni 21.3 7.1E+02 0.024 25.9 12.0 124 222-357 510-638 (716)
135 3e5z_A Putative gluconolactona 21.2 4.2E+02 0.014 23.2 12.8 15 335-349 221-235 (296)
136 3sjl_D Methylamine dehydrogena 20.4 5.6E+02 0.019 24.3 21.0 166 115-295 73-253 (386)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-74 Score=585.22 Aligned_cols=367 Identities=31% Similarity=0.477 Sum_probs=335.7
Q ss_pred eecCCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCC-c
Q 011268 107 VETSAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-Q 184 (489)
Q Consensus 107 ~~~~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G-~ 184 (489)
+..+..+|++|+||..|+++| ++|+||+||+|.+||||.+...+ ...|++++.....+|++|+||..|+++|+++| +
T Consensus 11 v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 89 (406)
T ss_dssp ----CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred CCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence 344566799999999999999 99999999999999999998776 35666666556669999999999999999986 9
Q ss_pred EEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeec
Q 011268 185 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 264 (489)
Q Consensus 185 v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~ 264 (489)
||+||.|.+||||.+.. .....|.+++.+.+.+|++|+||..|++||+++|+||+||.|.+||||.++......|.++.
T Consensus 90 v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999887 56788999999999999999999999999999999999999999999999999889999998
Q ss_pred CCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCc
Q 011268 265 PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 344 (489)
Q Consensus 265 ~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~ 344 (489)
.+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+. ..+|++|+||.+|+++|+++|+
T Consensus 169 ~~~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEG-IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp GGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCC
T ss_pred ccCC-CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCC
Confidence 8765 589999999999999999999999999999999999988888898887653 4589999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEE
Q 011268 345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI 424 (489)
Q Consensus 345 vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~ 424 (489)
||+||.|.+||||+++......|++++.+.+.+|++|+||.+|++||+++|+||+||+|.+||||.+. ......|.+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~ 322 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN---NLDQCSPVQ 322 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---SSCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC---CCCCccCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 455678999
Q ss_pred cCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEccc
Q 011268 425 LDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE 481 (489)
Q Consensus 425 v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 481 (489)
++.+...+|++|+||.+|++||+++|+||+||+|++||||+++..+...|+.|+...
T Consensus 323 v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp ECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred EeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 987777899999999999999999999999999999999999999999999886543
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-72 Score=564.97 Aligned_cols=364 Identities=27% Similarity=0.428 Sum_probs=321.7
Q ss_pred EecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcc
Q 011268 118 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCC 196 (489)
Q Consensus 118 ~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gql 196 (489)
..-....+++ +||+||+||.|.+||||.+.... ...|++++.....+|++|+||..|+++|+++|+||+||.|.+|||
T Consensus 7 ~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqL 85 (389)
T 3kci_A 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK-VKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRL 85 (389)
T ss_dssp --------------CEEEEEECTTSTTSSCSCSE-EEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTT
T ss_pred ccCcccceeECCCCeEEEeeCCCCccCCCCcCcc-ccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCC
Confidence 3334556778 99999999999999999876554 557777776666789999999999999999999999999999999
Q ss_pred cCCCCCCceeccEEeccCCCCC--eEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEE
Q 011268 197 GHRDTNRPIFRPRLVEALKGVP--CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQ 274 (489)
Q Consensus 197 g~~~~~~~~~~p~~v~~~~~~~--i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~ 274 (489)
|.+.. .....|.+++.+.+.+ +++|+||.+|++||+++|+||+||.|.+||||.++......|.++..+.. .+|++
T Consensus 86 G~g~~-~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~-~~i~~ 163 (389)
T 3kci_A 86 GIGGT-ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRG-IEVVD 163 (389)
T ss_dssp SSSSS-CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEE
T ss_pred CCCCc-CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCC-CeEEE
Confidence 99876 4577899998887654 47889999999999999999999999999999999988889999988764 58999
Q ss_pred EEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC--CeEEEEcCCCcEEEEecCC
Q 011268 275 IAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGY 352 (489)
Q Consensus 275 i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~ 352 (489)
|+||..|+++|+++|+||+||.|.+||||.+.......|.+++.+. +.+|++|+||. .|+++|+++|+||+||.|.
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 9999999999999999999999999999999998888999888764 56899999995 8999999999999999999
Q ss_pred CCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCC
Q 011268 353 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHH 432 (489)
Q Consensus 353 ~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~ 432 (489)
+||||.+.......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ......|++++.+.+.+
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~~ 318 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS---DDHVRRPRQVQGLQGKK 318 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS---CCCEEEEEECGGGTTCC
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC---CccccCCeEeccCCCCC
Confidence 999999999888999999999999999999999999999999999999999999999987 45678899999998889
Q ss_pred EEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEccccccccCCC
Q 011268 433 VSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA 489 (489)
Q Consensus 433 v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~ia 489 (489)
|++|+||.+|+++++++|+||+||+|++||||+++..++..|++|......++..||
T Consensus 319 v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va 375 (389)
T 3kci_A 319 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVA 375 (389)
T ss_dssp EEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEE
T ss_pred EEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999877766666554
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.4e-69 Score=550.26 Aligned_cols=354 Identities=24% Similarity=0.345 Sum_probs=308.4
Q ss_pred EEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCC
Q 011268 116 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSF 194 (489)
Q Consensus 116 ~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~g 194 (489)
+.+.+..|++++ .+|+||+||.|.+||||.+........|++++. ..+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G 89 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG 89 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccC--CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCC
Confidence 456668899999 999999999999999999987665556666654 46899999999999999999999999999999
Q ss_pred cccCCCCC-CceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeC--CCCCccCCCCCCCC-CCceeecCCCCCC
Q 011268 195 CCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDR-PTPKSIAPLEEVG 270 (489)
Q Consensus 195 qlg~~~~~-~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~--n~~GqlG~~~~~~~-~~p~~i~~~~~~~ 270 (489)
|||.+... .....|.++.. . .+|++|+||.+|++||+++|+||+||. |.+||||.++.... ..|.++... .
T Consensus 90 qLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~---~ 164 (413)
T 1a12_A 90 ALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD---V 164 (413)
T ss_dssp TTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCS---S
T ss_pred CCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCC---C
Confidence 99998763 34668888854 2 379999999999999999999999999 99999998876543 358777432 6
Q ss_pred CEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCC-----------CcCceEeecccc---CCccEEEEEecCCeE
Q 011268 271 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD-----------ELQPRAIQTFRR---KGIHVVRVSAGDEHV 336 (489)
Q Consensus 271 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~-----------~~~p~~i~~~~~---~~~~i~~i~~g~~h~ 336 (489)
+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+..... ...+|++|+||.+|+
T Consensus 165 ~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 899999999999999999999999999999999875422 245655543211 345899999999999
Q ss_pred EEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCC--CcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCC
Q 011268 337 VALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS--HLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414 (489)
Q Consensus 337 ~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~ 414 (489)
++|+++|+||+||.|.+||||.++......|++|..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~- 323 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG- 323 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT-
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCC-
Confidence 999999999999999999999999988899999998877 67999999999999999999999999999999999853
Q ss_pred CCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEcc
Q 011268 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQ 480 (489)
Q Consensus 415 ~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 480 (489)
......|++|+.+. +|++|+||.+|+++|+++|+||+||.|++||||+++..+...|++|..+
T Consensus 324 -~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~ 386 (413)
T 1a12_A 324 -AEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 386 (413)
T ss_dssp -CCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCST
T ss_pred -CccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEcccc
Confidence 34567899998776 8999999999999999999999999999999999998889999988753
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=9.9e-69 Score=545.98 Aligned_cols=354 Identities=20% Similarity=0.289 Sum_probs=304.4
Q ss_pred CCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEe
Q 011268 111 AGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 189 (489)
Q Consensus 111 ~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG 189 (489)
..++.+|++|..|++++ ++|+||+||.|.+||||.+........|+++ +....|++|+||..|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v--~~l~~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPV--AGIPDAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEEC--CSCSSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEc--cCCCCceEEeeCCCeEEEEeCCCeEEEeE
Confidence 45678899999999999 9999999999999999999765544455544 45557999999999999999999999999
Q ss_pred CCCCCcccCCCCCC-ceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeC--CCCCccCCCCCCCCCCceeecCC
Q 011268 190 DNSSFCCGHRDTNR-PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGS--NTHGQLGHGDTLDRPTPKSIAPL 266 (489)
Q Consensus 190 ~n~~gqlg~~~~~~-~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~--n~~GqlG~~~~~~~~~p~~i~~~ 266 (489)
.|.+||||.+.... ....|.++... .+|++|+||..|++||+++|+||+||. |.+||||.+......+|..+...
T Consensus 101 ~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~ 178 (423)
T 3mvd_K 101 CNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEG 178 (423)
T ss_dssp CCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTT
T ss_pred CCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCC
Confidence 99999999987643 36788888743 479999999999999999999999999 99999999888777777666432
Q ss_pred CCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCC-----------CCcCceEeeccccCCccEEEEEecCCe
Q 011268 267 EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH-----------DELQPRAIQTFRRKGIHVVRVSAGDEH 335 (489)
Q Consensus 267 ~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~-----------~~~~p~~i~~~~~~~~~i~~i~~g~~h 335 (489)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++... ...+|++|+||..|
T Consensus 179 ---~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~~g~~~ 253 (423)
T 3mvd_K 179 ---TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIWATNYC 253 (423)
T ss_dssp ---CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEEEETTE
T ss_pred ---CcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEEECCcE
Confidence 689999999999999999999999999999999997643 34578777654 34589999999999
Q ss_pred EEEE-cCCCcEEEEecCCCCCCCCCCCCCc--ccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCC
Q 011268 336 VVAL-DSSGYVYTWGKGYCGALGHGDEIDK--TLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 412 (489)
Q Consensus 336 ~~~l-t~~G~vy~wG~n~~gqlg~~~~~~~--~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~ 412 (489)
++++ +++|+||+||.|.+||||.+..... ..|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+.
T Consensus 254 ~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~ 330 (423)
T 3mvd_K 254 TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGD 330 (423)
T ss_dssp EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSS
T ss_pred EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCC
Confidence 9999 7999999999999999999655443 3555554 34699999999999999999999999999999999987
Q ss_pred CCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEc
Q 011268 413 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI 479 (489)
Q Consensus 413 ~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 479 (489)
. ......|+.++.+.. +|++|+||.+|+++|+++|+||+||.|.+||||+++..+...|++|..
T Consensus 331 ~--~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 331 V--KDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp C--CSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred c--cccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 4 334578999998876 899999999999999999999999999999999999999999999985
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-68 Score=548.57 Aligned_cols=360 Identities=22% Similarity=0.342 Sum_probs=308.2
Q ss_pred CeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCC--eeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEE
Q 011268 113 NQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT--QCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFT 187 (489)
Q Consensus 113 ~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~--~~~~p~~~~~~--~~~~i~~vs~G~~~~~~lt~~G~v~~ 187 (489)
.+....++..|++++ .+++||+||.|.+||||.+.... ....|+++++. ...+|++|+||..|+++|+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 356677888999999 99999999999999999998543 34456666554 34589999999999999999999999
Q ss_pred EeCCCCCcccCCCCCCc----------------------eeccEEecc--C----CCCCeEEEEccCCeeEEEEcCCcEE
Q 011268 188 CGDNSSFCCGHRDTNRP----------------------IFRPRLVEA--L----KGVPCKQVTAGLNFTGFLTIRGHVH 239 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~----------------------~~~p~~v~~--~----~~~~i~~V~~G~~h~~~Lt~~G~vy 239 (489)
||.|.+||||.+..... ...|.+++. + .+.+|++|+||.+|++||+++|+||
T Consensus 91 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy 170 (473)
T 3of7_A 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVY 170 (473)
T ss_dssp EECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred eECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEE
Confidence 99999999999876431 457888875 4 3678999999999999999999999
Q ss_pred EEeC--CCCCccCCCCC--CCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCC----Cc
Q 011268 240 TCGS--NTHGQLGHGDT--LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----EL 311 (489)
Q Consensus 240 ~wG~--n~~GqlG~~~~--~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~----~~ 311 (489)
+||. +..||||.+.. ....+|.++..+.. .+|++|+||..|+++|+++|+||+||.|.+||||.+.... ..
T Consensus 171 ~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 249 (473)
T 3of7_A 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSK-YNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTL 249 (473)
T ss_dssp EEECEEETTEEEESBTTTBSCEEEEEECCCCCS-SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTC
T ss_pred EeeCCcCCCCccCCCCCCCccccCcEEccccCC-CCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccccccc
Confidence 9998 68999998544 35567888887754 5799999999999999999999999999999999986543 34
Q ss_pred CceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCC----CcccceeeccCCCCcEEEEEeeCCe
Q 011268 312 QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEI----DKTLPEPLSSLKSHLAVQVCARKRK 387 (489)
Q Consensus 312 ~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~----~~~~p~~v~~~~~~~i~~v~~G~~h 387 (489)
.|.++.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|++|..+.+.+|++|+||.+|
T Consensus 250 ~p~~~~~-----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~h 324 (473)
T 3of7_A 250 DPRPFGL-----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHH 324 (473)
T ss_dssp SCEECSC-----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSE
T ss_pred CceecCC-----cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCe
Confidence 5665542 379999999999999999999999999999999998764 3457999998888899999999999
Q ss_pred EEEEEcCCcEEEEEcCCCCCCCCCCCC-----------CCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEe
Q 011268 388 TFVLVDTGSVYGFGWMGFGSLGFPDRG-----------VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFG 456 (489)
Q Consensus 388 t~~lt~~G~vy~wG~n~~gqLG~~~~~-----------~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG 456 (489)
+++|+++|+||+||.|.+||||.+... .......|..++.+. +|++|+||.+|++||+++|+||+||
T Consensus 325 s~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp EEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEee
Confidence 999999999999999999999987531 122345788887654 7999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCcccCeEEEcc
Q 011268 457 DNERAQLGHDT-LRGCLEPTEIFIQ 480 (489)
Q Consensus 457 ~n~~GqLG~~~-~~~~~~p~~v~~~ 480 (489)
.|++||||+++ ..++..|++|...
T Consensus 403 ~n~~GqLG~g~~~~~~~~P~~v~~~ 427 (473)
T 3of7_A 403 FGETYAVGLGPFEDDTEVPTRIKNT 427 (473)
T ss_dssp CCTTCTTCCCSCCSCEEEEEECCCT
T ss_pred CCCCCCCCCCCCCccccCCeEeccc
Confidence 99999999998 8889999998754
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-68 Score=534.37 Aligned_cols=370 Identities=25% Similarity=0.415 Sum_probs=320.7
Q ss_pred cCChhhhhhhhhccCCCcccceeeeeecccccceee-cCCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCC
Q 011268 73 GMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVE-TSAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT 150 (489)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~ 150 (489)
.+.....+++|.||.+..++++.........|..+. ....++++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 13 ~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~ 92 (389)
T 3kci_A 13 NLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTES 92 (389)
T ss_dssp --------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCC
T ss_pred ceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCC
Confidence 345667899999999998888732222222222222 2234699999999999999 99999999999999999987755
Q ss_pred eeeeeeEeeCCCCC--CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCe
Q 011268 151 QCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNF 228 (489)
Q Consensus 151 ~~~~p~~~~~~~~~--~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h 228 (489)
...|++++..... ++++|+||..|+++|+++|+||+||.|.+||||.+.. .....|++++.+.+.+|++|+||..|
T Consensus 93 -~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~va~G~~h 170 (389)
T 3kci_A 93 -VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIESLRGIEVVDVAAGGAH 170 (389)
T ss_dssp -EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSE
T ss_pred -ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEecccCCCeEEEEEeCcCe
Confidence 4567776655444 5588999999999999999999999999999999987 45778999999999999999999999
Q ss_pred eEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CEEEEEEcCCcEEEecCCCCcccCCCC
Q 011268 229 TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGE 306 (489)
Q Consensus 229 ~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~ 306 (489)
+++|+++|+||+||.|.+||||.++......|.++..+.. .+|++|+||. .|+++|+++|+||+||.|.+||||.+.
T Consensus 171 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~ 249 (389)
T 3kci_A 171 SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG-HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249 (389)
T ss_dssp EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSS
T ss_pred EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC-CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCC
Confidence 9999999999999999999999999998899999988765 5899999995 899999999999999999999999999
Q ss_pred CCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCC
Q 011268 307 QHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR 386 (489)
Q Consensus 307 ~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ 386 (489)
......|.+++.+. +.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|++|+.+.+.+|++|+||.+
T Consensus 250 ~~~~~~p~~v~~~~--~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~ 327 (389)
T 3kci_A 250 SDGCKVPMKIDSLT--GLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL 327 (389)
T ss_dssp CCCEEEEEECGGGT--TSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS
T ss_pred CCCccccEEecccC--CCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC
Confidence 88888899888764 4579999999999999999999999999999999999999899999999999999999999999
Q ss_pred eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCC
Q 011268 387 KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 450 (489)
Q Consensus 387 ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G 450 (489)
|+++|+++|+||+||.|.+||||.+. ......|++++.+.+.+|++|+||.+|++|+++++
T Consensus 328 h~~al~~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 328 HCVCCTEDGEVYTWGDNDEGQLGDGT---TNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp EEEEEETTCCEEEEECCTTSTTCSSS---CCCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred eEEEECCCCCEEEeeCCCCCcCCCCC---CCCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence 99999999999999999999999987 45678899999998899999999999999998764
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=7.6e-66 Score=522.75 Aligned_cols=370 Identities=24% Similarity=0.337 Sum_probs=312.7
Q ss_pred cCChhhhhhhhhccCCCcccceeeeeec-ccccceeecCCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCC-
Q 011268 73 GMSRNVQIELLNRCNGNWKRVLRFLQSV-EHSSDIVETSAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET- 149 (489)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~- 149 (489)
.+.....+++|.||.+..++++...... ...|..+.. ..+|++|+||..|+++| ++|+||+||.|.+||||.+...
T Consensus 20 ~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~ 98 (413)
T 1a12_A 20 RSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSI-PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE 98 (413)
T ss_dssp TTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECC-SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST
T ss_pred ceeecCCCcEEEEECCCCCcCCCCCCccccccceEccC-CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCC
Confidence 3455678889999999888886432211 223444443 36799999999999999 9999999999999999998763
Q ss_pred CeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeC--CCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCC
Q 011268 150 TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN 227 (489)
Q Consensus 150 ~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~--n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~ 227 (489)
.....|+++.+ ..+|++|+||..|+++|+++|+||+||. |.+||||.+........|.++ +...+|++|+||.+
T Consensus 99 ~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~ 174 (413)
T 1a12_A 99 GSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGND 174 (413)
T ss_dssp TGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSS
T ss_pred ccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCc
Confidence 22345666654 3489999999999999999999999999 999999998775555568777 45678999999999
Q ss_pred eeEEEEcCCcEEEEeCCCCCccCCCCCCC-----------CCCceeecCCC----CCCCEEEEEeCCCEEEEEEcCCcEE
Q 011268 228 FTGFLTIRGHVHTCGSNTHGQLGHGDTLD-----------RPTPKSIAPLE----EVGSVVQIAAGPSYMLAVTGNGVVY 292 (489)
Q Consensus 228 h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~-----------~~~p~~i~~~~----~~~~i~~i~~G~~~~~~lt~~G~vy 292 (489)
|+++|+++|+||+||.|.+||||.+.... ...|..+.... ...+|++|+||.+|+++|+++|+||
T Consensus 175 hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~ 254 (413)
T 1a12_A 175 HLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 254 (413)
T ss_dssp EEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEE
T ss_pred eEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEE
Confidence 99999999999999999999999875421 24565555431 2368999999999999999999999
Q ss_pred EecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCC-CCCCcccceeec
Q 011268 293 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG-DEIDKTLPEPLS 371 (489)
Q Consensus 293 ~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~-~~~~~~~p~~v~ 371 (489)
+||.|.+||||.+.......|+++..+.....+|++|+||.+|+++|+++|+||+||.|.+||||.+ +......|++|+
T Consensus 255 ~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~ 334 (413)
T 1a12_A 255 GFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 334 (413)
T ss_dssp EEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC
T ss_pred EEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec
Confidence 9999999999999888888999998776444579999999999999999999999999999999998 556677899998
Q ss_pred cCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCc--CCCCCEEEEEecCCeEEEEEcC
Q 011268 372 SLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDR 449 (489)
Q Consensus 372 ~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~i~~G~~ht~~l~~~ 449 (489)
.+. +|++|+||.+|+++|+++|+||+||.|.+||||.++. .....|++++. +.+.+|++|+||.+|+++|+++
T Consensus 335 ~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~---~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~ 409 (413)
T 1a12_A 335 RLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD---EDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKD 409 (413)
T ss_dssp SSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC---SCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred ccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCC---CCcccCeEccccccCCCeEEEEeeCCCcEEEEEec
Confidence 776 6999999999999999999999999999999999873 55788999974 4667899999999999999999
Q ss_pred CCE
Q 011268 450 GRL 452 (489)
Q Consensus 450 G~v 452 (489)
|++
T Consensus 410 g~~ 412 (413)
T 1a12_A 410 KEQ 412 (413)
T ss_dssp CSC
T ss_pred CCC
Confidence 863
No 8
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.1e-64 Score=510.34 Aligned_cols=320 Identities=33% Similarity=0.510 Sum_probs=297.9
Q ss_pred CCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCC-cEEEE
Q 011268 163 AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRG-HVHTC 241 (489)
Q Consensus 163 ~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G-~vy~w 241 (489)
..+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|.+++.+.+.+|++|+||..|+++|+++| +||+|
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA-EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCc-ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 348999999999999999999999999999999999987 4568899999998889999999999999999886 99999
Q ss_pred eCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeecccc
Q 011268 242 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 321 (489)
Q Consensus 242 G~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 321 (489)
|.|.+||||.+.......|.++..+.. .+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~-~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~- 171 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHG-IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE- 171 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT-
T ss_pred cCCCCcCCCCCCCCccccceEecccCC-CCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC-
Confidence 999999999999988889999987754 589999999999999999999999999999999999988888899888764
Q ss_pred CCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEE
Q 011268 322 KGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFG 401 (489)
Q Consensus 322 ~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG 401 (489)
+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|+++..+.+.+|++|+||.+|+++|+++|+||+||
T Consensus 172 -~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 172 -GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG 250 (406)
T ss_dssp -TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred -CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence 5589999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEccc
Q 011268 402 WMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE 481 (489)
Q Consensus 402 ~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 481 (489)
.|.+||||.++ ......|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++..+...|++|.++.
T Consensus 251 ~n~~GqlG~g~---~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 327 (406)
T 4d9s_A 251 WSKYGQLGHGD---LEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327 (406)
T ss_dssp CCTTSTTCSSS---CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGG
T ss_pred CCCCCCCCCCC---CcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccC
Confidence 99999999987 455788999999888899999999999999999999999999999999999999999999999887
Q ss_pred cccccCCC
Q 011268 482 MEEDTGLA 489 (489)
Q Consensus 482 ~~~~~~ia 489 (489)
..++.+||
T Consensus 328 ~~~v~~va 335 (406)
T 4d9s_A 328 DQKVVQVS 335 (406)
T ss_dssp GCCEEEEE
T ss_pred CCcEEEEE
Confidence 77666553
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-63 Score=507.68 Aligned_cols=363 Identities=22% Similarity=0.287 Sum_probs=303.8
Q ss_pred cCChhhhhhhhhccCCCcccceeeee-ecccccceeecCCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCC
Q 011268 73 GMSRNVQIELLNRCNGNWKRVLRFLQ-SVEHSSDIVETSAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT 150 (489)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~ 150 (489)
.+.....+++|.||.+.+++++.... .....|..+.. ..++++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 36 ~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~ 114 (423)
T 3mvd_K 36 PKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAG-IPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSED 114 (423)
T ss_dssp CCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCS-CSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCST
T ss_pred ceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccC-CCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCC
Confidence 55667889999999999988864321 11122333332 34599999999999999 99999999999999999987654
Q ss_pred -eeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeC--CCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCC
Q 011268 151 -QCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN 227 (489)
Q Consensus 151 -~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~--n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~ 227 (489)
....|.++. ...+|++|+||..|+++|+++|+||+||. |.+||||.+... .. |.+++.+...+|++|+||.+
T Consensus 115 ~~~~~P~~v~--~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~-~~--~~p~~~~~~~~i~~va~G~~ 189 (423)
T 3mvd_K 115 GSESKPDLID--LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG-NK--RTPIDLMEGTVCCSIASGAD 189 (423)
T ss_dssp TSSSSCEECC--CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB-CE--EEEEESSTTCCEEEEEECSS
T ss_pred ccccCCeEEc--CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC-CC--ceeeEecCCCcEEEEecCCC
Confidence 123455554 44589999999999999999999999999 999999998663 23 44444567788999999999
Q ss_pred eeEEEEcCCcEEEEeCCCCCccCCCCCC-----------CCCCceeecCCCCCCCEEEEEeCCCEEEEE-EcCCcEEEec
Q 011268 228 FTGFLTIRGHVHTCGSNTHGQLGHGDTL-----------DRPTPKSIAPLEEVGSVVQIAAGPSYMLAV-TGNGVVYSFG 295 (489)
Q Consensus 228 h~~~Lt~~G~vy~wG~n~~GqlG~~~~~-----------~~~~p~~i~~~~~~~~i~~i~~G~~~~~~l-t~~G~vy~wG 295 (489)
|+++|+++|+||+||.|.+||||.+... ....|.++..+.. .+|++|+||..|++++ +++|+||+||
T Consensus 190 hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~-~~v~~i~~g~~~~~~~~~~~g~v~~wG 268 (423)
T 3mvd_K 190 HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA-KPFEAIWATNYCTFMRESQTQVIWATG 268 (423)
T ss_dssp EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC-CCEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC-ccEEEEEECCcEEEEEECCCCeEEEEe
Confidence 9999999999999999999999997653 3457888875544 6899999999999999 6999999999
Q ss_pred CCCCcccCCCCCCCCc--CceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCC-cccceeecc
Q 011268 296 SGSNFCLGHGEQHDEL--QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSS 372 (489)
Q Consensus 296 ~n~~gqlG~~~~~~~~--~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~-~~~p~~v~~ 372 (489)
.|.+||||.+...... .|.++. ..+|++|+||..|+++|+++|+||+||.|.+||||.++... ...|++++.
T Consensus 269 ~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~ 343 (423)
T 3mvd_K 269 LNNFKQLAHETKGKEFALTPIKTE-----LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK 343 (423)
T ss_dssp ECTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTT
T ss_pred CCCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEecc
Confidence 9999999996554443 444443 23799999999999999999999999999999999998766 457999988
Q ss_pred CCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCc--CCCCCEEEEEecCCeEEEEEcCC
Q 011268 373 LKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRG 450 (489)
Q Consensus 373 ~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~i~~G~~ht~~l~~~G 450 (489)
+.+ +|++|+||.+|++||+++|+||+||.|.+||||.++ ......|++|.. +.+.+|++|+||.+|+++|++++
T Consensus 344 l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 344 LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD---GDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSS---SCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCC---CCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEccc
Confidence 877 899999999999999999999999999999999987 455678999985 66789999999999999999987
Q ss_pred C
Q 011268 451 R 451 (489)
Q Consensus 451 ~ 451 (489)
+
T Consensus 420 k 420 (423)
T 3mvd_K 420 K 420 (423)
T ss_dssp -
T ss_pred c
Confidence 5
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-63 Score=509.33 Aligned_cols=361 Identities=19% Similarity=0.275 Sum_probs=297.4
Q ss_pred hhhhhhhccCCCcccceeeee---ecccccceeec---CCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCC
Q 011268 78 VQIELLNRCNGNWKRVLRFLQ---SVEHSSDIVET---SAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT 150 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~ 150 (489)
..+++|.||.+.+++++.... .....|..++. ...+|++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 27 ~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~ 106 (473)
T 3of7_A 27 QPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNA 106 (473)
T ss_dssp SCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC--
T ss_pred CCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCccc
Confidence 467899999999998864321 11122223222 234799999999999999 99999999999999999987654
Q ss_pred e----------------------eeeeeEee---CC---CCCCEEEEEeCCceeEEEEcCCcEEEEeC--CCCCcccCCC
Q 011268 151 Q----------------------CVSFTRIN---FP---SAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRD 200 (489)
Q Consensus 151 ~----------------------~~~p~~~~---~~---~~~~i~~vs~G~~~~~~lt~~G~v~~wG~--n~~gqlg~~~ 200 (489)
. ...|++++ ++ ...+|++|+||..|+++|+++|+||+||. +.+||||.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~ 186 (473)
T 3of7_A 107 KEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ 186 (473)
T ss_dssp -------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBT
T ss_pred ccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCC
Confidence 1 23455555 22 34699999999999999999999999998 6889999854
Q ss_pred CC-CceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCC----CCCceeecCCCCCCCEEEE
Q 011268 201 TN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPLEEVGSVVQI 275 (489)
Q Consensus 201 ~~-~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~----~~~p~~i~~~~~~~~i~~i 275 (489)
.. .....|.+++.+.+.+|++|+||..|++||+++|+||+||.|.+||||.+.... ...|..+.. .+|++|
T Consensus 187 ~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~----~~v~~I 262 (473)
T 3of7_A 187 DKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL----RHVKYI 262 (473)
T ss_dssp TTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC----CSEEEE
T ss_pred CCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC----cceEEE
Confidence 43 456789999999988999999999999999999999999999999999986543 345666532 589999
Q ss_pred EeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCC----CcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecC
Q 011268 276 AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 276 ~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~----~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n 351 (489)
+||.+|+++|+++|+||+||.|.+||||.+.... ...|+++..+ .+.+|++|+||..|+++|+++|+||+||.|
T Consensus 263 a~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 263 ASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp EECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEEC
T ss_pred ecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEECC
Confidence 9999999999999999999999999999987643 2467777654 346899999999999999999999999999
Q ss_pred CCCCCCCCCCC--------------CcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCC
Q 011268 352 YCGALGHGDEI--------------DKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSD 417 (489)
Q Consensus 352 ~~gqlg~~~~~--------------~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~ 417 (489)
.+||||.+... ....|.+++.+. +|++|+||.+|++||+++|+||+||.|.+||||.++. ..
T Consensus 341 ~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~--~~ 416 (473)
T 3of7_A 341 DMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPF--ED 416 (473)
T ss_dssp TTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSC--CS
T ss_pred CCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCC--Cc
Confidence 99999986531 223566666544 6999999999999999999999999999999999872 44
Q ss_pred ceeccEEcC--cCCCCCEEEEEecCCeEEEEEc
Q 011268 418 KVLRPRILD--SLRAHHVSQISTGLYHTVVVTD 448 (489)
Q Consensus 418 ~~~~P~~v~--~~~~~~v~~i~~G~~ht~~l~~ 448 (489)
....|++|+ .+.+.+|++|+||.+|++++..
T Consensus 417 ~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 417 DTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp CEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred cccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 578899998 4556789999999999999976
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=8.5e-53 Score=403.15 Aligned_cols=254 Identities=22% Similarity=0.245 Sum_probs=214.8
Q ss_pred CCCeEEEEecCceeEEeeCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeC
Q 011268 111 AGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD 190 (489)
Q Consensus 111 ~~~~~~i~~G~~h~~~l~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~ 190 (489)
..+|++|+||..|+++|.+|+||+||.|.+||||... +...+|++|+||..|+++|+ +|+||+||.
T Consensus 23 ~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~-------------~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 23 QSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPA-------------ATQSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp SSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCG-------------GGGSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred cCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCc-------------cCCCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 3469999999999999999999999999999999521 12347999999999999996 999999999
Q ss_pred CCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCC
Q 011268 191 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG 270 (489)
Q Consensus 191 n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~ 270 (489)
|.+||||. |..+ ..+|++|+||.+|+++|+ +|+||+||.|.+||||. |.. .. .
T Consensus 89 n~~Gqlg~---------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~--------~~~--~~---~ 141 (282)
T 3qhy_B 89 NEDGQTTV---------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV--------PAE--AQ---S 141 (282)
T ss_dssp CTTSTTCC---------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC--------CGG--GG---S
T ss_pred CCCCCCCC---------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC--------Ccc--CC---C
Confidence 99999985 3323 237999999999999999 99999999999999973 211 11 5
Q ss_pred CEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEec
Q 011268 271 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 350 (489)
Q Consensus 271 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~ 350 (489)
+|++|+||..|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++| ++|+||+||.
T Consensus 142 ~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~wG~ 205 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIAWGD 205 (282)
T ss_dssp SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEEEEC
T ss_pred CeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEEEEC
Confidence 7999999999999999 89999999999999983 3222 23799999999999999 8999999999
Q ss_pred CCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCC
Q 011268 351 GYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRA 430 (489)
Q Consensus 351 n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~ 430 (489)
|.+||||.+. . .+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 206 n~~gqlg~p~--------~--~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~------------------- 253 (282)
T 3qhy_B 206 NRYKQTTVPT--------E--AL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ------------------- 253 (282)
T ss_dssp CTTSTTCCCG--------G--GG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS-------------------
T ss_pred CCCCCCCCCc--------c--cC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC-------------------
Confidence 9999998532 1 11 25899999999999999 999999999999988642
Q ss_pred CCEEEEEecCCeEEEEEcCCCEE
Q 011268 431 HHVSQISTGLYHTVVVTDRGRLF 453 (489)
Q Consensus 431 ~~v~~i~~G~~ht~~l~~~G~v~ 453 (489)
..|++|+||..|+++|+++++.+
T Consensus 254 ~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp SCEEEEEECSSCEEEEEC-----
T ss_pred CCcEEEEECcCeEEEEecCCCCC
Confidence 16999999999999999998754
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=4.1e-52 Score=398.46 Aligned_cols=251 Identities=21% Similarity=0.260 Sum_probs=212.5
Q ss_pred cEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEE
Q 011268 131 SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRL 210 (489)
Q Consensus 131 ~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~ 210 (489)
+||+||+|...++.. .+.+...+|++|+||..|+++|+ +|+||+||.|.+||||... .
T Consensus 3 ~v~~WG~n~~~~~~~------------~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~---------~ 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEAT------------VPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA---------A 60 (282)
T ss_dssp EEEEECSCCTTSTTC------------CCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG---------G
T ss_pred EEEEeCCCCCcCccc------------CCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc---------c
Confidence 599999986554431 22333458999999999999998 9999999999999999521 1
Q ss_pred eccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCc
Q 011268 211 VEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV 290 (489)
Q Consensus 211 v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~ 290 (489)
...+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++. .+|++|+||.+|+++|+ +|+
T Consensus 61 ----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G~ 121 (282)
T 3qhy_B 61 ----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DGK 121 (282)
T ss_dssp ----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TTE
T ss_pred ----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CCe
Confidence 1236899999999999996 99999999999999984 44332 58999999999999999 999
Q ss_pred EEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceee
Q 011268 291 VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPL 370 (489)
Q Consensus 291 vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v 370 (489)
||+||.|.+||||. |.+ ...+|++|+||..|+++|+ +|+||+||.|.+||||. |.++
T Consensus 122 v~~wG~n~~gqlg~--------~~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~ 178 (282)
T 3qhy_B 122 VIAWGDDSDGQTTV--------PAE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA 178 (282)
T ss_dssp EEEEECCTTSTTSC--------CGG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG
T ss_pred EEEecCCCCCcCCC--------Ccc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec
Confidence 99999999999983 111 1237999999999999999 89999999999999983 3333
Q ss_pred ccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCC
Q 011268 371 SSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 450 (489)
Q Consensus 371 ~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G 450 (489)
..+|++|+||.+|+++| ++|+||+||.|.+||||.+.+ . ..+|++|+||.+|+++|+ +|
T Consensus 179 ----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~-------------~--~~~v~~i~~G~~h~~al~-~g 237 (282)
T 3qhy_B 179 ----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE-------------A--LSGVSAIASGEWYSLALK-NG 237 (282)
T ss_dssp ----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG-------------G--GSSCCEEEECSSCEEEEE-TT
T ss_pred ----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc-------------c--CCCceEEEcCCCEEEEEE-CC
Confidence 34699999999999999 999999999999999996531 1 136999999999999999 99
Q ss_pred CEEEEeCCCCCCCCCC
Q 011268 451 RLFGFGDNERAQLGHD 466 (489)
Q Consensus 451 ~v~~wG~n~~GqLG~~ 466 (489)
+||+||.|++||++..
T Consensus 238 ~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 238 KVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp EEEEESTTCCCCGGGS
T ss_pred EEEEecCCCCccccCC
Confidence 9999999999999873
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.08 E-value=1e-06 Score=88.90 Aligned_cols=361 Identities=9% Similarity=0.005 Sum_probs=197.6
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccccCCCCCccccchhhHHHHHHhhhccccccCChhhhhhh-hhccC
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIEL-LNRCN 87 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (489)
.+..||++|+.+||. ||+++||.++..+||.|+..+. .+......|..+...++......... .....
T Consensus 18 ~~~~lp~e~~~~i~~--~l~~~~l~~~~~v~~~~~~~~~---------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (445)
T 2ovr_B 18 FISLLPKELALYVLS--FLEPKDLLQAAQTCRYWRILAE---------DNLLWREKCKEEGIDEPLHIKRRKVIKPGFIH 86 (445)
T ss_dssp TTTSSCHHHHHHHHT--TSCHHHHHHHTTSCHHHHHHHT---------CSHHHHHHHTTTTCCSCCCCCC--CCSSCCCC
T ss_pred hhHHCCHHHHHHHHH--hCCHHHHHHHHHHhHHHHhhcC---------chhHhhhheeecccccccccccceecCCCccC
Confidence 467899999999999 9999999999999998876432 11122334544322211110000000 00001
Q ss_pred CCcccceee--------eeecccccceeecCCCC-eEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeE
Q 011268 88 GNWKRVLRF--------LQSVEHSSDIVETSAGN-QMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTR 157 (489)
Q Consensus 88 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~ 157 (489)
..|+..+.. .............-.+. +..++.-+...+.- .||.|.+|-....-. ...
T Consensus 87 ~~wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~------------~~~ 154 (445)
T 2ovr_B 87 SPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC------------LRT 154 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE------------EEE
T ss_pred CcHHHHHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcE------------EEE
Confidence 122221100 00000001111111122 23344333333333 789999997532110 111
Q ss_pred eeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCc
Q 011268 158 INFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGH 237 (489)
Q Consensus 158 ~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~ 237 (489)
+. .....|..++......+.-..||.|..|-.... + ....+.. ....|..++......+.-+.+|.
T Consensus 155 ~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~ 220 (445)
T 2ovr_B 155 LV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E-----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRDAT 220 (445)
T ss_dssp CC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E-----------EEEEECC-CSSCEEEEEEETTEEEEEETTSE
T ss_pred Ec-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c-----------EEEEECC-CCCcEEEEEecCCEEEEEeCCCE
Confidence 11 122367777776777777788999999965431 0 0111111 22346777776777777788999
Q ss_pred EEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEee
Q 011268 238 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 317 (489)
Q Consensus 238 vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~ 317 (489)
|..|-..... ....+... ...|..++......+.-..+|.|..|-... ...+.
T Consensus 221 i~~wd~~~~~-----------~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~ 273 (445)
T 2ovr_B 221 LRVWDIETGQ-----------CLHVLMGH--VAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLH 273 (445)
T ss_dssp EEEEESSSCC-----------EEEEEECC--SSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEE
T ss_pred EEEEECCCCc-----------EEEEEcCC--cccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeE
Confidence 9999543211 01111111 246777777777777788899999985322 11222
Q ss_pred ccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcE
Q 011268 318 TFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSV 397 (489)
Q Consensus 318 ~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~v 397 (489)
.+......|..++....+.+.-..+|.|..|-...... ...+. .....+..++......+.-..||.|
T Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i 341 (445)
T 2ovr_B 274 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTV 341 (445)
T ss_dssp EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCE
T ss_pred EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeE
Confidence 22223346777777666777778899999997643110 01111 1223466677777777777889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeccEEcCc--CCCCCEEEEEecCCeEEEEEcCCCEEEEeCCC
Q 011268 398 YGFGWMGFGSLGFPDRGVSDKVLRPRILDS--LRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 398 y~wG~n~~gqLG~~~~~~~~~~~~P~~v~~--~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~ 459 (489)
..|-..... ....+.. .....|..++....+.+.-..||.|..|-...
T Consensus 342 ~vwd~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 342 KIWDIKTGQ--------------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEETTTCC--------------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCc--------------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 999743211 1111111 12346778887777777778899999997654
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.93 E-value=2.5e-06 Score=85.79 Aligned_cols=377 Identities=11% Similarity=0.045 Sum_probs=196.3
Q ss_pred ccccCChH----HHHHHHhcCCCCcccccccccccccccccC-CCCCccccchhhHH----HHHHhhhc----cccccCC
Q 011268 9 SIEELPSH----LIFEILTSGRLSAVDLAHLELTSKTFGGSH-GLYPQKFRSLVDLA----ASQLCALH----SIYAGMS 75 (489)
Q Consensus 9 ~~~~lp~~----i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~-~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~ 75 (489)
.+..||++ |+++||. ||+++||.+++.|||.|+..+ +...|+.....++. ........ ..+++-.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~--~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 87 (435)
T 1p22_A 10 FITALPARGLDHIAENILS--YLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKP 87 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHT--TCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC----
T ss_pred hHHHCCcchHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCC
Confidence 45789999 9999999 999999999999999888654 22344322222110 00000000 0000000
Q ss_pred hh------h-hhhhhh-------ccCCCcccceeeeeecccccceeecCCCCeEEEEecCceeEEe-eCCcEEEEeCCCC
Q 011268 76 RN------V-QIELLN-------RCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLI-SNSSVFSCGSSLC 140 (489)
Q Consensus 76 ~~------~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~ 140 (489)
.. . ...++. .-+.+|..-....... .........+..++......+.- .||.|.+|-...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~- 162 (435)
T 1p22_A 88 PDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRI----HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT- 162 (435)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCE----ECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSS-
T ss_pred CCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEE----ecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCC-
Confidence 00 0 000000 0011222100000000 00001123366666654444444 889999996432
Q ss_pred CCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeE
Q 011268 141 GVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK 220 (489)
Q Consensus 141 gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~ 220 (489)
++ ....+. .....|..++......+.-..||.|..|-....- . ...+.. ....|.
T Consensus 163 ~~-----------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~---------~---~~~~~~-h~~~v~ 217 (435)
T 1p22_A 163 LE-----------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE---------M---LNTLIH-HCEAVL 217 (435)
T ss_dssp CC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC---------E---EEEECC-CCSCEE
T ss_pred Ce-----------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc---------E---EEEEcC-CCCcEE
Confidence 11 011111 2234688888866777777889999999754411 0 011111 233577
Q ss_pred EEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCc-eeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCC
Q 011268 221 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 299 (489)
Q Consensus 221 ~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p-~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~ 299 (489)
.++......+.-+.+|.|..|-..... ...+ ..+... ...|..++....+.+.-..+|.|..|-....
T Consensus 218 ~l~~~~~~l~s~s~dg~i~vwd~~~~~---------~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 218 HLRFNNGMMVTCSKDRSIAVWDMASPT---------DITLRRVLVGH--RAAVNVVDFDDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp EEECCTTEEEEEETTSCEEEEECSSSS---------CCEEEEEECCC--SSCEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EEEEcCCEEEEeeCCCcEEEEeCCCCC---------CceeeeEecCC--CCcEEEEEeCCCEEEEEeCCCeEEEEECCcC
Confidence 777777777777899999999432211 0111 111111 2578888887788888888999999964321
Q ss_pred cccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEE
Q 011268 300 FCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAV 379 (489)
Q Consensus 300 gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~ 379 (489)
..+..+......|..++......+.-..+|.|..|-...... ...+. .....|.
T Consensus 287 --------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~-----------~~~~~-~h~~~v~ 340 (435)
T 1p22_A 287 --------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC-----------LRVLE-GHEELVR 340 (435)
T ss_dssp --------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCSSCEE
T ss_pred --------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE-----------EEEEe-CCcCcEE
Confidence 112222223335677776667777778899999997643110 11111 1233577
Q ss_pred EEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCC
Q 011268 380 QVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 380 ~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~ 459 (489)
.++....+.+.-..||.|..|-........... . ......+.. ....|..++....+.+.-..||.|..|-...
T Consensus 341 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~-~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 341 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA----G-TLCLRTLVE-HSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCT----T-TTEEEEECC-CSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEecCCEEEEEeCCCcEEEEECCCCCCccccc----c-chheeeccC-CCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 777766666677789999999742211100000 0 000111111 1234566666556666666789999997665
Q ss_pred C
Q 011268 460 R 460 (489)
Q Consensus 460 ~ 460 (489)
.
T Consensus 415 ~ 415 (435)
T 1p22_A 415 D 415 (435)
T ss_dssp -
T ss_pred C
Confidence 4
No 15
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.79 E-value=2.2e-05 Score=79.33 Aligned_cols=370 Identities=9% Similarity=0.035 Sum_probs=184.3
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccccCCC--CCccccchhhH-------HHHHHhhhccccccCChhh-
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGL--YPQKFRSLVDL-------AASQLCALHSIYAGMSRNV- 78 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~- 78 (489)
.+..||++|+++||. ||+++||++++.+||.+++.+.- ..|+...+.+- .... ......|.......
T Consensus 14 ~~~~lp~~~~~~i~~--~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 90 (464)
T 3v7d_B 14 LITSLPFEISLKIFN--YLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLN-LKLSQKYPKLSQQDR 90 (464)
T ss_dssp HHHHSCHHHHHHHHT--TSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHH-HHHHHHCTTSCHHHH
T ss_pred ChHHCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhh-hhhhccCCCcccchh
Confidence 467899999999999 99999999999999988875432 33332211110 0000 00000000011000
Q ss_pred --------hhhhhhccCCCcccceeeeeecccccceeecCCCC-eEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCC
Q 011268 79 --------QIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGN-QMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPE 148 (489)
Q Consensus 79 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~ 148 (489)
...+..|....+..... ....-... +..++......+.- .||.|.+|-.... +
T Consensus 91 ~~~~~~~~~~~~~~w~~~~~~~~~~----------~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~------ 153 (464)
T 3v7d_B 91 LRLSFLENIFILKNWYNPKFVPQRT----------TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK-K------ 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEE----------EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E------
T ss_pred hHHHHHHhhhhHhhhcCCCcCcceE----------EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC-c------
Confidence 00111221221111100 01111112 23344433333333 7899999964321 0
Q ss_pred CCeeeeeeEeeCCCCCCEEEEEeCCc-eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--
Q 011268 149 TTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-- 225 (489)
Q Consensus 149 ~~~~~~p~~~~~~~~~~i~~vs~G~~-~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G-- 225 (489)
....+. .....|..++.... ..+.-..||.|..|-..... ....+.. ....|..++.-
T Consensus 154 -----~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~------------~~~~~~~-h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 154 -----FLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC------------CTHVFEG-HNSTVRCLDIVEY 214 (464)
T ss_dssp -----EEEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTE------------EEEEECC-CSSCEEEEEEEES
T ss_pred -----EEEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc------------EEEEECC-CCCccEEEEEecC
Confidence 011111 12336777775433 55666788999999654310 0111111 12235544432
Q ss_pred --CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCce----------eecCC-CCCCCEEEEEeCCCEEEEEEcCCcEE
Q 011268 226 --LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK----------SIAPL-EEVGSVVQIAAGPSYMLAVTGNGVVY 292 (489)
Q Consensus 226 --~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~----------~i~~~-~~~~~i~~i~~G~~~~~~lt~~G~vy 292 (489)
....+.-+.+|.|..|-............ ....+. .+..+ .....|..++......+.-..+|.|.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGE-EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC-------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccc-cCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEE
Confidence 24455667899999996543322111000 000010 11111 11246777777778888888899999
Q ss_pred EecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC--CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceee
Q 011268 293 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPL 370 (489)
Q Consensus 293 ~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v 370 (489)
.|-.... ..+..+......|..++... ...+.-..+|.|+.|-... ++ ....+
T Consensus 294 vwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~----------~~~~~ 348 (464)
T 3v7d_B 294 VWDVAQM--------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GE----------LMYTL 348 (464)
T ss_dssp EEETTTT--------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TE----------EEEEE
T ss_pred EEECCCC--------------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc----------EEEEE
Confidence 9964321 11222222233465555543 3555567889999996532 10 01111
Q ss_pred ccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCC
Q 011268 371 SSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRG 450 (489)
Q Consensus 371 ~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G 450 (489)
. .....|..++....+.+.-..||.|..|-..... ............+..+...+. .++...+|
T Consensus 349 ~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~l~~~~dg 412 (464)
T 3v7d_B 349 Q-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS--------------RKFSYHHTNLSAITTFYVSDN-ILVSGSEN 412 (464)
T ss_dssp C-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC--------------EEEEEECTTCCCEEEEEECSS-EEEEEETT
T ss_pred e-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc--------------eeeeecCCCCccEEEEEeCCC-EEEEecCC
Confidence 1 1233577777777777778899999999754311 111111112234555555444 44445588
Q ss_pred CEEEEeCCC
Q 011268 451 RLFGFGDNE 459 (489)
Q Consensus 451 ~v~~wG~n~ 459 (489)
.|..|=...
T Consensus 413 ~i~iwd~~~ 421 (464)
T 3v7d_B 413 QFNIYNLRS 421 (464)
T ss_dssp EEEEEETTT
T ss_pred eEEEEECCC
Confidence 999997655
No 16
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.40 E-value=3.8e-05 Score=52.34 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=32.1
Q ss_pred cccccCChHHHHHHHhcCCCCcccccccccccccccccC
Q 011268 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (489)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~ 46 (489)
..+.+||+||+.+||. +|+++|+.++..|||.|+...
T Consensus 7 ~~~~~LP~eil~~I~~--~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFS--CLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp --CCSSCHHHHHHHHT--TSCGGGHHHHHTTCHHHHHHH
T ss_pred CCHHHCCHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999 999999999999999777643
No 17
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.71 E-value=6.7e-05 Score=69.63 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.1
Q ss_pred ccccCChHHHHHHHhcCCCCcccccccccccccccccC
Q 011268 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSH 46 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~~ 46 (489)
++++||+||+++||. ||+|+||..|..|||+++..+
T Consensus 4 ~l~~LP~ei~l~Ils--fL~p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS--FLSPHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHHHSCHHHHHHHHH--TSCHHHHHHHHTTCHHHHHHH
T ss_pred hhHhCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999 999999999999999877754
No 18
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.50 E-value=0.74 Score=45.34 Aligned_cols=229 Identities=11% Similarity=0.055 Sum_probs=139.4
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCC
Q 011268 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 244 (489)
Q Consensus 165 ~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n 244 (489)
.|..++......+.-..||.|..|-.... . ....+.. ....|..++......+.-+.||.|..|-..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~---------~---~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL---------E---CKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC---------C---EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC---------e---EEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 57777777777777889999999964331 0 0111111 233577777766666666889999999543
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCc
Q 011268 245 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 324 (489)
Q Consensus 245 ~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~ 324 (489)
.. + ....+.. ....|..++......+.-..+|.|..|-..... .......+.....
T Consensus 202 ~~-~----------~~~~~~~--h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~ 257 (435)
T 1p22_A 202 TG-E----------MLNTLIH--HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT-----------DITLRRVLVGHRA 257 (435)
T ss_dssp SC-C----------EEEEECC--CCSCEEEEECCTTEEEEEETTSCEEEEECSSSS-----------CCEEEEEECCCSS
T ss_pred CC-c----------EEEEEcC--CCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC-----------CceeeeEecCCCC
Confidence 21 1 1111111 125788888888888888899999999543211 1111111222234
Q ss_pred cEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCC
Q 011268 325 HVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 404 (489)
Q Consensus 325 ~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~ 404 (489)
.|..++....+.+.-..+|.|..|-..... ....+. .....|..++......+.-..||.|..|-...
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 677777766777777889999999753311 011111 12335777777777777788899999997432
Q ss_pred CCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeC
Q 011268 405 FGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGD 457 (489)
Q Consensus 405 ~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~ 457 (489)
.. ....+.. ....|..++....+.+.-..||.|..|-.
T Consensus 326 ~~--------------~~~~~~~-h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 326 GA--------------CLRVLEG-HEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CC--------------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CC--------------EEEEEeC-CcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 10 0111111 23357777776667777778999999964
No 19
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.28 E-value=0.0076 Score=53.78 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=59.7
Q ss_pred CEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCC
Q 011268 165 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 244 (489)
Q Consensus 165 ~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n 244 (489)
.|.+|+.-..|..++-.+++++.+|+++.||+-..... -++.++.+|.++++-+..-..+-.||..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 68889999999999999999999999999998766542 2478999999999999999999999985
Q ss_pred CCCc
Q 011268 245 THGQ 248 (489)
Q Consensus 245 ~~Gq 248 (489)
....
T Consensus 376 PDNS 379 (400)
T 4gbf_A 376 PDNS 379 (400)
T ss_dssp TTST
T ss_pred CCcc
Confidence 4443
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.07 E-value=0.011 Score=52.76 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=59.0
Q ss_pred CCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecC
Q 011268 217 VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 296 (489)
Q Consensus 217 ~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~ 296 (489)
..|.+|+--..|..++--+++|++||+++.||+-.... ..+..++++|.++++-+..-..|-.||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t--------------agPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH--------------AGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG--------------GCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC--------------cchHHhHhccCCeEEEEeceeeEEEecC
Confidence 45788999999999999999999999999999743211 1589999999999999999999999998
Q ss_pred CCCcc
Q 011268 297 GSNFC 301 (489)
Q Consensus 297 n~~gq 301 (489)
.....
T Consensus 375 SPDNS 379 (400)
T 4gbf_A 375 SPDNS 379 (400)
T ss_dssp CTTST
T ss_pred CCCcc
Confidence 65433
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.35 E-value=2.4 Score=41.66 Aligned_cols=226 Identities=8% Similarity=-0.019 Sum_probs=132.0
Q ss_pred CeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCC
Q 011268 113 NQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 191 (489)
Q Consensus 113 ~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n 191 (489)
.+..++.-....+.- .||.|+.|-.... . ....+. .....|..++......+.-+.||.|..|-..
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---------~---~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETG---------E---CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTT---------E---EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcC---------c---EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence 355555443333333 7888888864321 0 111111 2233677888777778888899999999654
Q ss_pred CCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCC-CCC
Q 011268 192 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE-EVG 270 (489)
Q Consensus 192 ~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~-~~~ 270 (489)
..- .. ..+. .....|..++......+.-+.+|.|..|-... ...+..+. ...
T Consensus 228 ~~~---------~~---~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~ 280 (445)
T 2ovr_B 228 TGQ---------CL---HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGHTN 280 (445)
T ss_dssp SCC---------EE---EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCCSS
T ss_pred CCc---------EE---EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCCCC
Confidence 311 00 1111 12334666666666677778899999994321 11111111 125
Q ss_pred CEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEec
Q 011268 271 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 350 (489)
Q Consensus 271 ~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~ 350 (489)
.|..++....+.+.-..+|.|..|-..... .+..+......+..++......+.-..+|.|..|-.
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGN--------------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 688888877788888889999999643311 112222223356666666667777788999999975
Q ss_pred CCCCCCCCCCCCCcccceeecc--CCCCcEEEEEeeCCeEEEEEcCCcEEEEEcC
Q 011268 351 GYCGALGHGDEIDKTLPEPLSS--LKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 403 (489)
Q Consensus 351 n~~gqlg~~~~~~~~~p~~v~~--~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n 403 (489)
.... ....+.. .....|..++....+.+.-..||.|..|-..
T Consensus 347 ~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 347 KTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 3211 0111111 1233577787777777777889999999743
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=95.15 E-value=2 Score=39.75 Aligned_cols=277 Identities=6% Similarity=-0.049 Sum_probs=136.2
Q ss_pred EecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCC-ceeEEEEcCCcEEEEeCCCCCc
Q 011268 118 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVFTCGDNSSFC 195 (489)
Q Consensus 118 ~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~-~~~~~lt~~G~v~~wG~n~~gq 195 (489)
..+.-..+++ .||+.++++......+....... ..... .......|..++... ...++...+|.|..|-......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH-ARQIN--TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE-EEEEE--EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc-cccce--eccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc
Confidence 3444566777 89999988876544433322211 11111 123334566666543 2344444589999997654211
Q ss_pred ccCCCCCCceeccEEecc-CCCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCE
Q 011268 196 CGHRDTNRPIFRPRLVEA-LKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 272 (489)
Q Consensus 196 lg~~~~~~~~~~p~~v~~-~~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i 272 (489)
. .....+.. .....|..++.. ....++-..+|.|+.|-..... ......+.. ....|
T Consensus 85 ~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~--~~~~i 144 (337)
T 1gxr_A 85 K---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELTS--SAPAC 144 (337)
T ss_dssp C---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEEC--SSSCE
T ss_pred e---------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeeccc--CCCce
Confidence 0 01111110 122345555543 3344455678999998432110 000111111 11456
Q ss_pred EEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC--CeEEEEcCCCcEEEE
Q 011268 273 VQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTW 348 (489)
Q Consensus 273 ~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~w 348 (489)
..++.. ..+.+.-..+|.|+.|-.... ..+..+......|..++... ...+....+|.|+.|
T Consensus 145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 666654 345566677899999854321 11222222233566665543 344556788999999
Q ss_pred ecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcC
Q 011268 349 GKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD 426 (489)
Q Consensus 349 G~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~ 426 (489)
-...... ...+. ....+..++.. ....++-..+|.|+.|-..... ...+.
T Consensus 211 d~~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~ 262 (337)
T 1gxr_A 211 DLREGRQ-----------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---------------KYQLH 262 (337)
T ss_dssp ETTTTEE-----------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---------------EEEEC
T ss_pred ECCCCce-----------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---------------eEEEc
Confidence 7532110 01111 12234444442 3344445567888888643210 11111
Q ss_pred cCCCCCEEEEEec--CCeEEEEEcCCCEEEEeCCCC
Q 011268 427 SLRAHHVSQISTG--LYHTVVVTDRGRLFGFGDNER 460 (489)
Q Consensus 427 ~~~~~~v~~i~~G--~~ht~~l~~~G~v~~wG~n~~ 460 (489)
. ....|..++.. ....+....+|.|..|-....
T Consensus 263 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 263 L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp C-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred C-CccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 1 12356666655 344555567888999976553
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.74 E-value=2.9 Score=44.24 Aligned_cols=104 Identities=12% Similarity=-0.002 Sum_probs=51.6
Q ss_pred CCeeEEEEc-CCcEEEEeCCCCCc--cCCCCC--CCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCc
Q 011268 226 LNFTGFLTI-RGHVHTCGSNTHGQ--LGHGDT--LDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 300 (489)
Q Consensus 226 ~~h~~~Lt~-~G~vy~wG~n~~Gq--lG~~~~--~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~g 300 (489)
..|+++... +|+||.+|-..... +..-.. ....+-..+..++ ..-..|++++..+|+||.+|-....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p--------~~R~~h~~~~~~~~~iyv~GG~~~~ 512 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS--------HTRFRHSACSLPDGNVLILGGVTEG 512 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS--------BCCBSCEEEECTTSCEEEECCBCSS
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC--------CCcccceEEEEcCCEEEEECCCCCC
Confidence 468888776 89999998532211 100000 0001112222211 1234677777668999999853221
Q ss_pred ccCCCCCCCCcCceEeeccccCCccEEEEEe-------cCCeE-EEEcCC-CcEEEEec
Q 011268 301 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSA-------GDEHV-VALDSS-GYVYTWGK 350 (489)
Q Consensus 301 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~-------g~~h~-~~lt~~-G~vy~wG~ 350 (489)
. .+..+.........+.. -..|+ +++..+ +++|++|-
T Consensus 513 ~-------------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 513 P-------------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp C-------------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred C-------------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 1 11222222223333332 23566 444555 89999984
No 24
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.64 E-value=5.1 Score=41.91 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=37.7
Q ss_pred CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEE----eeCCeEEE-EEcCCcEEEEEcCCCCC
Q 011268 334 EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC----ARKRKTFV-LVDTGSVYGFGWMGFGS 407 (489)
Q Consensus 334 ~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~----~G~~ht~~-lt~~G~vy~wG~n~~gq 407 (489)
.|++++..+|+||+.|-...+.. .........+..... ...+...+. .-.+|+.+ +..+|+||..|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp-~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVP-EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEG-GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcC-CCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 57777778999999985433321 111111111221111 111111111 23567654 55799999999876553
No 25
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=94.27 E-value=0.016 Score=54.18 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=39.4
Q ss_pred cccccCChHHHHHHHhcCCCCccccc-ccccccccccccCCCCCccccchhhHHHHHHhhhc
Q 011268 8 FSIEELPSHLIFEILTSGRLSAVDLA-HLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALH 68 (489)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~L~~~d~~-~L~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (489)
..+.+||+|||.+||. +|+|+||+ ...+|||.++... -...+.+..|..+
T Consensus 49 ~~~~~LP~ell~~Il~--~Lp~~~L~~r~~~VCk~Wr~l~---------~~~~~w~~~~~~~ 99 (297)
T 2e31_A 49 EYLAELPEPLLLRVLA--ELPATELVQACRLVCLRWKELV---------DGAPLWLLKCQQE 99 (297)
T ss_dssp CCTTSSCHHHHHHHHH--TSCHHHHHHTGGGTCHHHHHHH---------TSHHHHHHHHHHT
T ss_pred cChhhCCHHHHHHHHH--cCCHHHHHHHHHHHhHHHHHHh---------cChHHHHHHhhcc
Confidence 4678999999999999 99999999 9999999766642 2233445667766
No 26
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.47 E-value=8.3 Score=40.27 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEE----ecCCeEEE-EEcCCCEEEEeCCC
Q 011268 385 KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS----TGLYHTVV-VTDRGRLFGFGDNE 459 (489)
Q Consensus 385 ~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~----~G~~ht~~-l~~~G~v~~wG~n~ 459 (489)
..|++++.-+|+||..|-...+. +... ......+..... .......+. .-.+|+.+ +..||+||..|.+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~-~~~~---~~~~~~v~~ydp-~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGI-PFED---STPVFTPEIYVP-EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCC-TTCC---CSBCCCCEEEEG-GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ccCCeEECCCCCEEEECCcccCc-CcCC---CCcccceEEEcC-CCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 46777777799999999543332 1111 011111111110 111222221 12467654 55799999999876
Q ss_pred CCC
Q 011268 460 RAQ 462 (489)
Q Consensus 460 ~Gq 462 (489)
.+.
T Consensus 532 ~~~ 534 (656)
T 1k3i_A 532 CGD 534 (656)
T ss_dssp CTT
T ss_pred CCC
Confidence 553
No 27
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=93.41 E-value=4.8 Score=37.11 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=127.9
Q ss_pred eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcCCcEEEEeCCCCCccCCC
Q 011268 175 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHG 252 (489)
Q Consensus 175 ~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~ 252 (489)
-+++|+++|-|-.-- |+.. .+..+..+.. ...+.+++|++|++|.---.+.-. .
T Consensus 3 vtvils~~Gwir~~~-------g~~~--------------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~---~ 58 (276)
T 3no0_A 3 ITVAVLQDGSIIPVE-------ELPL--------------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ---G 58 (276)
T ss_dssp EEEEEETTSEEEEGG-------GCCS--------------SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT---S
T ss_pred EEEEEcCCceeeecc-------CCCC--------------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc---C
Confidence 367888888665321 2211 2334454433 345578899999999763211100 0
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeC---CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEE
Q 011268 253 DTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV 329 (489)
Q Consensus 253 ~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i 329 (489)
. .. .+ +.+.++|+.+.+- ..+.+++|++|.+...-..++-+ .........+. .+..++.+
T Consensus 59 ~---~~---~l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~--------~~~G~~~i~lk-egD~l~~~ 121 (276)
T 3no0_A 59 S---KV---SL--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY--------KAQGMPIIKLT-EGDEVVSI 121 (276)
T ss_dssp E---EC---CC--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT--------CSTTEECSCCC-TTCCEEEE
T ss_pred c---cc---cc--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh--------hcCCeEEEecC-CCCEEEEE
Confidence 0 00 03 4445789988762 25788999999888765433321 01111111122 12244444
Q ss_pred Ee--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCC
Q 011268 330 SA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGF 405 (489)
Q Consensus 330 ~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~ 405 (489)
.. +..+.+++|++|++|.+-..+.-.+|....-.. .+...++.+|+.+... ..+.+++|++|.+.-.=..++
T Consensus 122 ~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 122 ASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp EECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 33 445688899999999997655444443222111 1222345667776554 346778899998877765444
Q ss_pred CCCCCCCCCCCCceeccEEcCcCCCCCEEEEE--ecCCeEEEEEcCCCEEE--EeCCCCCCCC
Q 011268 406 GSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVTDRGRLFG--FGDNERAQLG 464 (489)
Q Consensus 406 gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~--~G~~ht~~l~~~G~v~~--wG~n~~GqLG 464 (489)
-..+.+.... .. + .++..++.+. .+....++++++|++.. +-.++--.+|
T Consensus 198 ~~~~R~gkGv---~~----i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 198 PKTNRGVKGT---EV----S--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp CCCCTTCCCE---EC----C--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred ccCCCCCcce---EE----E--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 3333221110 00 0 1223344432 34567889999999998 7555443333
No 28
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.69 E-value=7.4 Score=37.41 Aligned_cols=148 Identities=12% Similarity=0.066 Sum_probs=84.7
Q ss_pred EEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcCCcEEEEeC
Q 011268 166 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGS 243 (489)
Q Consensus 166 i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~G~vy~wG~ 243 (489)
+..++-.....++...+|.|+.|-....- ....+.......|..|+. ...+.++-+.+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44466556778888999999999764411 111111112334555554 3345555677899999954
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCC
Q 011268 244 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 323 (489)
Q Consensus 244 n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~ 323 (489)
.... ....+... ...|..++......+.-..+|.|+.|-..... . .+..+....
T Consensus 164 ~~~~-----------~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~--~~~~~~~~~ 217 (401)
T 4aez_A 164 ESQT-----------KLRTMAGH--QARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------H--QIGTLQGHS 217 (401)
T ss_dssp TTCC-----------EEEEECCC--SSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------C--EEEEEECCS
T ss_pred cCCe-----------EEEEecCC--CCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------c--eeeEEcCCC
Confidence 3211 11122211 25788888877777888889999999653211 1 111122223
Q ss_pred ccEEEEEecC--CeEEEEcCCCcEEEEecC
Q 011268 324 IHVVRVSAGD--EHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 324 ~~i~~i~~g~--~h~~~lt~~G~vy~wG~n 351 (489)
..|..++... ...+.-..+|.|+.|-..
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 3566665543 344455678999999754
No 29
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.69 E-value=2.6 Score=44.57 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=14.9
Q ss_pred CCEEEEEEcCCcEEEecCC
Q 011268 279 PSYMLAVTGNGVVYSFGSG 297 (489)
Q Consensus 279 ~~~~~~lt~~G~vy~wG~n 297 (489)
..|++++..+++||.+|-.
T Consensus 598 ~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp BSCEEEEEETTEEEEECCB
T ss_pred ccceEEEeCCCEEEEECCc
Confidence 4678887777999999853
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.64 E-value=8.6 Score=35.79 Aligned_cols=303 Identities=7% Similarity=-0.037 Sum_probs=140.6
Q ss_pred CCeEEEEec------CceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCC-CCCCEEEEEeCCc------eeE
Q 011268 112 GNQMQITTG------RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP-SAAHVVQVSASEN------HAA 177 (489)
Q Consensus 112 ~~~~~i~~G------~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~-~~~~i~~vs~G~~------~~~ 177 (489)
+.|..++.- ....++. .++.|.+|-...... .........+ ....|..++.... ..+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 346666654 3334444 788899997542211 1112222211 2235666555332 455
Q ss_pred EEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc---CCeeEEEEcCCcEEEEeCCCCCccCCCCC
Q 011268 178 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDT 254 (489)
Q Consensus 178 ~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~ 254 (489)
.-..+|.|..|-.... .. ...+.. ....|..++.. ....+.-..+|.|+.|-.....
T Consensus 90 ~~~~dg~i~v~d~~~~---------~~---~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 90 VAGSRGIIRIINPITM---------QC---IKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EEETTCEEEEECTTTC---------CE---EEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred EecCCCEEEEEEchhc---------eE---eeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 6678899999964431 11 111111 23346666653 3455556789999999543211
Q ss_pred CCCCCceeecC-CCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccC-------CCC--CCCCcCceE-----ee
Q 011268 255 LDRPTPKSIAP-LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLG-------HGE--QHDELQPRA-----IQ 317 (489)
Q Consensus 255 ~~~~~p~~i~~-~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG-------~~~--~~~~~~p~~-----i~ 317 (489)
....+.. ......|..++.. ..+.+....+|.|+.|-......+. ... ......+.. ..
T Consensus 150 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 150 ----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp ----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 1111110 1112567777765 3456666788999999654321110 000 000000000 00
Q ss_pred ccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccC--CCCcEEEE--Eee--CCeEEEE
Q 011268 318 TFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--KSHLAVQV--CAR--KRKTFVL 391 (489)
Q Consensus 318 ~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~--~~~~i~~v--~~G--~~ht~~l 391 (489)
........|..++......+.-..+|.|..|-.....+.-............+..+ ....|..+ +.. ....++-
T Consensus 226 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 226 TRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp ECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 00011223444444456666678899999998644222110000000011111111 11112222 222 3444555
Q ss_pred EcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCC-CCCEEEEEecC--CeEEEEEcCCCEEEEeC
Q 011268 392 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLR-AHHVSQISTGL--YHTVVVTDRGRLFGFGD 457 (489)
Q Consensus 392 t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~-~~~v~~i~~G~--~ht~~l~~~G~v~~wG~ 457 (489)
..+|.|+.|-......+ ......+.... ...|..++... ...+.-..||.|+.|-.
T Consensus 306 ~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPH----------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp CTTSCEEEEECCSSSGG----------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ecCCcEEEEECCCCCCc----------cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 67899999974321100 00111222211 34677776653 34555667888988854
No 31
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.40 E-value=8.1 Score=35.05 Aligned_cols=267 Identities=7% Similarity=-0.044 Sum_probs=137.0
Q ss_pred CCeEEEEecCceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEe--CCceeEEEEcCCcEEE
Q 011268 112 GNQMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA--SENHAAFVLQSGQVFT 187 (489)
Q Consensus 112 ~~~~~i~~G~~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~--G~~~~~~lt~~G~v~~ 187 (489)
+.|..++.-....++. .||.|+.|-... + . ....+. .....|..++. .....+.-..+|.+..
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~-~--------~---~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDD-Q--------W---LGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESS-S--------E---EEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCC-C--------E---EEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 3466665532333444 789999996431 1 0 111111 11234555443 3455566677888888
Q ss_pred EeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCC
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 267 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~ 267 (489)
|-..... ... ....+. .....|..++......+.-+.+|.|+.|- .++ ....+...
T Consensus 86 ~~~~~~~------~~~---~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~----------~~~~~~~~- 141 (313)
T 3odt_A 86 VPLFATS------GED---PLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGS----------LVYNLQAH- 141 (313)
T ss_dssp EETTCCT------TSC---C-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEE---TTE----------EEEEEECC-
T ss_pred EEeeecC------CCC---cccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEc---CCc----------EEEecccC-
Confidence 8644311 000 001111 12345677777667777778899999993 110 11111111
Q ss_pred CCCCEEEEEe---CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeecccc-CCccEEEEEecC-CeEEEEcCC
Q 011268 268 EVGSVVQIAA---GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR-KGIHVVRVSAGD-EHVVALDSS 342 (489)
Q Consensus 268 ~~~~i~~i~~---G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~-~~~~i~~i~~g~-~h~~~lt~~ 342 (489)
...+..++. .....+....+|.|+.|-.. ..+..+.. ....|..++... ...++-..+
T Consensus 142 -~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 204 (313)
T 3odt_A 142 -NASVWDAKVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204 (313)
T ss_dssp -SSCEEEEEEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred -CCceeEEEEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence 145655554 56677777889999998411 01111111 122344444322 235556788
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCC-eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceec
Q 011268 343 GYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLR 421 (489)
Q Consensus 343 G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~ 421 (489)
|.|+.|-...... ...+. .....|..++.... ..++...+|.|+.|-.... ..
T Consensus 205 g~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------~~ 258 (313)
T 3odt_A 205 GLIKLVDMHTGDV-----------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG--------------SL 258 (313)
T ss_dssp SEEEEEETTTCCE-----------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC--------------CE
T ss_pred CeEEEEECCchhh-----------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC--------------ce
Confidence 9999997643110 11111 12334666665433 4556678899999963221 01
Q ss_pred cEEcCcCCCCCEEEEEecCC-eEEEEEcCCCEEEEeCCC
Q 011268 422 PRILDSLRAHHVSQISTGLY-HTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 422 P~~v~~~~~~~v~~i~~G~~-ht~~l~~~G~v~~wG~n~ 459 (489)
...+. .....|..++.... ..++-..||.|+.|-.+.
T Consensus 259 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 259 KQVIT-LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEEEE-CSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred eEEEe-ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 11111 12335777765433 355667899999997654
No 32
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.67 E-value=16 Score=35.62 Aligned_cols=240 Identities=8% Similarity=0.008 Sum_probs=125.1
Q ss_pred CCeEEEEecCceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC----CceeEEEEcCCcE
Q 011268 112 GNQMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQV 185 (489)
Q Consensus 112 ~~~~~i~~G~~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G----~~~~~~lt~~G~v 185 (489)
+.|..++.-....++. .||.|..|-... ++ ....+. .....|..++.- ....+.-+.||.|
T Consensus 163 ~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~-~~-----------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 163 GGVWALKYAHGGILVSGSTDRTVRVWDIKK-GC-----------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEEECSTTEEEEEETTSCEEEEETTT-TE-----------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred cCEEEEEEcCCCEEEEEeCCCCEEEEECCC-Cc-----------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 4466666544334444 788999996432 10 111111 123356555542 2456666789999
Q ss_pred EEEeCCCCCcccCCCCCC--------ceeccEEeccC--CCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCC
Q 011268 186 FTCGDNSSFCCGHRDTNR--------PIFRPRLVEAL--KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 255 (489)
Q Consensus 186 ~~wG~n~~gqlg~~~~~~--------~~~~p~~v~~~--~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~ 255 (489)
..|-.............. +...|..+..+ ....|..++......+.-..+|.|..|-.....
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-------- 301 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-------- 301 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--------
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------
Confidence 999765432211100000 00001011111 223567777667777777889999999542111
Q ss_pred CCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC
Q 011268 256 DRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD 333 (489)
Q Consensus 256 ~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~ 333 (489)
....+... ...|..++.. ....+.-..+|.|+.|-... ...+..+......|..++...
T Consensus 302 ---~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~ 362 (464)
T 3v7d_B 302 ---CLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLEN--------------GELMYTLQGHTALVGLLRLSD 362 (464)
T ss_dssp ---EEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECS
T ss_pred ---EEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------CcEEEEEeCCCCcEEEEEEcC
Confidence 01111111 1456666654 34666677889999985432 112222333344677777777
Q ss_pred CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcC
Q 011268 334 EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWM 403 (489)
Q Consensus 334 ~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n 403 (489)
.+.+.-..+|.|..|-.....+ ...........+..+..... .++...+|.|+.|-..
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLR 420 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-EEEEEETTEEEEEETT
T ss_pred CEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-EEEEecCCeEEEEECC
Confidence 7777788999999997643111 11111112223444444333 4555558899999743
No 33
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=89.09 E-value=0.1 Score=49.68 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=32.4
Q ss_pred cccccCChHHHHHHHhcCCCCccccccccccccccccc
Q 011268 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (489)
Q Consensus 8 ~~~~~lp~~i~~~~l~~~~L~~~d~~~L~~t~~~f~~~ 45 (489)
..+.+||+||+.+||. +|+.+|+..++.+||.++..
T Consensus 7 ~~~~~LP~eil~~If~--~L~~~d~~~~~~vc~~W~~~ 42 (336)
T 2ast_B 7 VSWDSLPDELLLGIFS--CLCLPELLKVSGVCKRWYRL 42 (336)
T ss_dssp CCSSSSCHHHHHHHHT--TSCHHHHHHTTSSCHHHHHH
T ss_pred CChhhCCHHHHHHHHH--hCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999 99999999999999976654
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.78 E-value=35 Score=38.32 Aligned_cols=222 Identities=10% Similarity=0.040 Sum_probs=100.5
Q ss_pred ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc-CCeeEEEEcCCcEEEEeCCCCCccCCC
Q 011268 174 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHG 252 (489)
Q Consensus 174 ~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G-~~h~~~Lt~~G~vy~wG~n~~GqlG~~ 252 (489)
...+.-..||.|..|-.... ++- ... .....|..++.. ....++...+|.|+.|-.... +
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~-~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~---- 1076 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTG-DYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-R---- 1076 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTT-EEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT-C----
T ss_pred CEEEEEcCCCEEEEEECCCC-ceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC-c----
Confidence 34455567889999965441 110 011 112234444432 334455677899999954321 1
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEE
Q 011268 253 DTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 330 (489)
Q Consensus 253 ~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~ 330 (489)
....+.... ..|..++.. ....+.-..+|.|+.|-...... +..+......|..++
T Consensus 1077 ------~~~~~~~~~--~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------~~~l~~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1077 ------IERDFTCHQ--GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------LHELKGHNGCVRCSA 1134 (1249)
T ss_dssp ------CCEEEECCS--SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------SBCCCCCSSCEEEEE
T ss_pred ------eeEEEcccC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------eeeeccCCCcEEEEE
Confidence 111111111 234333332 23344455677788775432111 111111222455555
Q ss_pred ecCC--eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceee---ccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCC
Q 011268 331 AGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPL---SSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGF 405 (489)
Q Consensus 331 ~g~~--h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v---~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~ 405 (489)
...+ ..+.-..+|.|+.|-......+.. ..|... .......|..++...+...+++.+|.|..|-....
T Consensus 1135 ~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATG 1208 (1249)
T ss_dssp ECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCC
Confidence 4433 334446788888887543221111 111111 01122235556555444444455688888864332
Q ss_pred CCCCCCCCCCCCceeccEEcCcCCCCCEE--EEEecCCeEEEEEcCCCEEEEeC
Q 011268 406 GSLGFPDRGVSDKVLRPRILDSLRAHHVS--QISTGLYHTVVVTDRGRLFGFGD 457 (489)
Q Consensus 406 gqLG~~~~~~~~~~~~P~~v~~~~~~~v~--~i~~G~~ht~~l~~~G~v~~wG~ 457 (489)
..+..-. . ....|. .++..+...++...+|.|+.|--
T Consensus 1209 ~~~~~~~--------------~-~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1209 DSSQTFY--------------T-NGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp BCCCCCC--------------C-SSCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred ceeeeee--------------c-cCCcccEEEECCCCCEEEEecCCcEEEEEee
Confidence 2111100 0 011222 23333445666778899998853
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=88.67 E-value=22 Score=35.90 Aligned_cols=150 Identities=6% Similarity=-0.034 Sum_probs=77.9
Q ss_pred CCEEEEEeCCCEEEEEEc-CCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEec--CCeEEEEcCCCcEE
Q 011268 270 GSVVQIAAGPSYMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVY 346 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~-~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~h~~~lt~~G~vy 346 (489)
..+..++....+.+.-.. +|.|+.|-.... ++ .. ..+......|..++.. ..+.+.-..+|.|+
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~-----------~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 513 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV-----------SF-DLKTPLRAKPSYISISPSETYIAAGDVMGKIL 513 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE-----------EE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc-----------cc-cccCCccCceEEEEECCCCCEEEEcCCCCeEE
Confidence 456666666556666666 888888865321 00 00 1122223356666553 34555567889999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee------------CCeEEEEEcCCcEEEEEcCCCCCCCCCCCC
Q 011268 347 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR------------KRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414 (489)
Q Consensus 347 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G------------~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~ 414 (489)
.|-......+ ..+.......|..++.. ....+.-..||.|+.|-.....++
T Consensus 514 iw~~~~~~~~-----------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------ 576 (615)
T 1pgu_A 514 LYDLQSREVK-----------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI------ 576 (615)
T ss_dssp EEETTTTEEE-----------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC------
T ss_pred EeeCCCCcce-----------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee------
Confidence 9976431111 11111123456666663 344445567899999975332110
Q ss_pred CCCceeccEEcCcCCCCCEEEEEecCCe-EEEEEcCCCEEEEeC
Q 011268 415 VSDKVLRPRILDSLRAHHVSQISTGLYH-TVVVTDRGRLFGFGD 457 (489)
Q Consensus 415 ~~~~~~~P~~v~~~~~~~v~~i~~G~~h-t~~l~~~G~v~~wG~ 457 (489)
...+.. ....|..++..... .+....||.|..|--
T Consensus 577 -------~~~~~~-h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 577 -------IKALNA-HKDGVNNLLWETPSTLVSSGADACIKRWNV 612 (615)
T ss_dssp -------EEETTS-STTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred -------chhhhc-CccceEEEEEcCCCCeEEecCCceEEEEee
Confidence 111111 12356666544332 334457888888843
No 36
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=88.52 E-value=15 Score=33.94 Aligned_cols=191 Identities=12% Similarity=-0.072 Sum_probs=100.4
Q ss_pred CCCEEEEEeCCc-----eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcC
Q 011268 163 AAHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIR 235 (489)
Q Consensus 163 ~~~i~~vs~G~~-----~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~ 235 (489)
...|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++.. ..+.+.-+.+
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 347888887654 444456689999996544211 11111111 12345555543 3455566788
Q ss_pred CcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CC--CEEEEEEcCCcEEEecCCCCcccCCCCCCCCc
Q 011268 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL 311 (489)
Q Consensus 236 G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 311 (489)
|.|..|-.... ....+.. ....|..++. .. .+.+.-..+|.|+.|-....-
T Consensus 108 g~v~iwd~~~~------------~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----------- 162 (368)
T 3mmy_A 108 KTAKMWDLSSN------------QAIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN----------- 162 (368)
T ss_dssp SEEEEEETTTT------------EEEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------
T ss_pred CcEEEEEcCCC------------Cceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------
Confidence 99999954321 1111211 1256777775 33 334555678999999543211
Q ss_pred CceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCC--CCcEEEEEeeCCe--
Q 011268 312 QPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKRK-- 387 (489)
Q Consensus 312 ~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~h-- 387 (489)
....+.. ...+..+..-....++.+.++.+..|-...... ....+.... ...+..+......
T Consensus 163 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 163 PMMVLQL----PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp CSEEEEC----SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred EEEEEec----CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCC
Confidence 1111111 124555555566777788889999987643110 011111111 1123334333333
Q ss_pred --EEEEEcCCcEEEEEcC
Q 011268 388 --TFVLVDTGSVYGFGWM 403 (489)
Q Consensus 388 --t~~lt~~G~vy~wG~n 403 (489)
.++-..+|.|..|-..
T Consensus 229 ~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEEEEETTSEEEEEESS
T ss_pred CeEEEecCCCcEEEEecC
Confidence 5666788999998754
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.38 E-value=18 Score=34.58 Aligned_cols=266 Identities=9% Similarity=0.016 Sum_probs=134.7
Q ss_pred EEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEEEeCCCC
Q 011268 117 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTCGDNSS 193 (489)
Q Consensus 117 i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G--~~~~~~lt~~G~v~~wG~n~~ 193 (489)
++-...+.++. .++.|+.|-... |+ ....+.......|..++.. ....++-+.+|.|..|-....
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~-~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADS-GS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EeecCCCEEEEECCCeEEEeeCCC-Cc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 44444555566 899999997542 11 1222333334467777654 345556667899999965431
Q ss_pred CcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEE
Q 011268 194 FCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 273 (489)
Q Consensus 194 gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~ 273 (489)
. ....+. .....|..++......+.-..+|.|+.|-....++ ....+... ...|.
T Consensus 167 ~------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~--~~~v~ 221 (401)
T 4aez_A 167 T------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH----------QIGTLQGH--SSEVC 221 (401)
T ss_dssp C------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECC--SSCEE
T ss_pred e------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc----------eeeEEcCC--CCCee
Confidence 1 111111 12345777777667777778899999995432111 11112111 14677
Q ss_pred EEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC--CeEEEEc---CCCcEE
Q 011268 274 QIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALD---SSGYVY 346 (489)
Q Consensus 274 ~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt---~~G~vy 346 (489)
.++.. ..+.+.-..+|.|+.|-.... .+ +..+......|..++... .+.++.. .+|.|+
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~------------~~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~ 287 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSS------------IP--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCS------------SE--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCC------------Cc--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEE
Confidence 77664 345556677899999965331 11 111111222344444433 2333332 588999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCe-EEEE-E--cCCcEEEEEcCCCCCCCCCCCCCCCceecc
Q 011268 347 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRK-TFVL-V--DTGSVYGFGWMGFGSLGFPDRGVSDKVLRP 422 (489)
Q Consensus 347 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~h-t~~l-t--~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P 422 (489)
.|-...... ...+. ....|..++..... .++. . .+|.|+.|-.... .....
T Consensus 288 i~d~~~~~~-----------~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~------------~~~~~ 342 (401)
T 4aez_A 288 FWNAATGAR-----------VNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS------------GLTKQ 342 (401)
T ss_dssp EEETTTCCE-----------EEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT------------EEEEE
T ss_pred EEECCCCCE-----------EEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc------------cceeE
Confidence 996532110 11111 12346666553322 2333 2 5888888863220 01111
Q ss_pred EEcCcCCCCCEEEEEec--CCeEEEEEcCCCEEEEeCCC
Q 011268 423 RILDSLRAHHVSQISTG--LYHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 423 ~~v~~~~~~~v~~i~~G--~~ht~~l~~~G~v~~wG~n~ 459 (489)
..+.. ....|..++.. +.+.+....||.|..|-...
T Consensus 343 ~~~~~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 343 VDIPA-HDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEC-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEecC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 11111 12245555444 33444455788888886554
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=88.31 E-value=16 Score=33.99 Aligned_cols=199 Identities=11% Similarity=0.019 Sum_probs=102.0
Q ss_pred CCEEEEEeC----CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc----CCeeEEEEcC
Q 011268 164 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 235 (489)
Q Consensus 164 ~~i~~vs~G----~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~Lt~~ 235 (489)
..|..++.. ....+.-..||.|..|-.... ...+..........|..++.. ....+.-+.+
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 467777764 456666678899999964331 000111111123346666554 3455666788
Q ss_pred CcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---------------CCEEEEEEcCCcEEEecCCCCc
Q 011268 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---------------PSYMLAVTGNGVVYSFGSGSNF 300 (489)
Q Consensus 236 G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---------------~~~~~~lt~~G~vy~wG~n~~g 300 (489)
|.|..|-..... ...+..+... ...|..++.. ....+.-..+|.|+.|-....
T Consensus 125 ~~i~v~d~~~~~---------~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 192 (379)
T 3jrp_A 125 GKVSVVEFKENG---------TTSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD- 192 (379)
T ss_dssp SEEEEEECCTTS---------CCCEEEEECC--TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT-
T ss_pred CcEEEEecCCCC---------ceeeEEecCC--CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC-
Confidence 999999543221 1111222221 1456666654 345666678899999843211
Q ss_pred ccCCCCCCCCcCceEeeccccCCccEEEEEecCC-----eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccC--
Q 011268 301 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-- 373 (489)
Q Consensus 301 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~-- 373 (489)
......+..+......|..++.... ..+....+|.|..|-...... .....+...
T Consensus 193 ---------~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~ 254 (379)
T 3jrp_A 193 ---------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEK 254 (379)
T ss_dssp ---------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSC
T ss_pred ---------CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeecccc
Confidence 0011112222222335666665543 344457789999997643110 000111111
Q ss_pred CCCcEEEEEeeC--CeEEEEEcCCcEEEEEcC
Q 011268 374 KSHLAVQVCARK--RKTFVLVDTGSVYGFGWM 403 (489)
Q Consensus 374 ~~~~i~~v~~G~--~ht~~lt~~G~vy~wG~n 403 (489)
....|..++... .+.++-..+|.|+.|-.+
T Consensus 255 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 255 FPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 223466665533 334445678999998644
No 39
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.01 E-value=16 Score=33.42 Aligned_cols=265 Identities=7% Similarity=-0.056 Sum_probs=128.8
Q ss_pred eEEEEecCc-eeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeC-CCCCCEEEEEeCC--ceeEEEEcCCcEEEE
Q 011268 114 QMQITTGRY-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSASE--NHAAFVLQSGQVFTC 188 (489)
Q Consensus 114 ~~~i~~G~~-h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~-~~~~~i~~vs~G~--~~~~~lt~~G~v~~w 188 (489)
+..++.-.. ..++. .+|.|..|-....... . ....+.. .....|..++... ...+.-..+|.|+.|
T Consensus 54 v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNK------S---PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCC------S---CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eEEEEEecCCcEEEEcCCCeEEEEECCCCCce------e---eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 444444332 23333 7788888865432211 0 1111221 2233566666553 345555678999999
Q ss_pred eCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCC
Q 011268 189 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 266 (489)
Q Consensus 189 G~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~ 266 (489)
-.... ... ....+.. ....|..++. ...+.+.-+.+|.|+.|-..... ....+...
T Consensus 125 d~~~~---------~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~~~ 182 (337)
T 1gxr_A 125 DLAAP---------TPR-IKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQGH 182 (337)
T ss_dssp ECCCC-----------E-EEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEECCC
T ss_pred ECCCC---------Ccc-eeeeccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeeecc
Confidence 65431 000 0011111 1223555544 33455556778999999543211 11122211
Q ss_pred CCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEec--CCeEEEEcCC
Q 011268 267 EEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSS 342 (489)
Q Consensus 267 ~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g--~~h~~~lt~~ 342 (489)
...|..++.. ....+....+|.|+.|-..... .+..+. ....+..++.. ....++-..+
T Consensus 183 --~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~ 245 (337)
T 1gxr_A 183 --TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--------------QLQQHD-FTSQIFSLGYCPTGEWLAVGMES 245 (337)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred --cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc--------------eEeeec-CCCceEEEEECCCCCEEEEEcCC
Confidence 2467777664 3456666788999999543211 111111 12245555443 3344455678
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 011268 343 GYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVL 420 (489)
Q Consensus 343 G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~ 420 (489)
|.|+.|-..... ...+. .....|..++.. ....+....+|.|+.|-...... .
T Consensus 246 ~~i~~~~~~~~~------------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------~- 300 (337)
T 1gxr_A 246 SNVEVLHVNKPD------------KYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----------I- 300 (337)
T ss_dssp SCEEEEETTSSC------------EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------E-
T ss_pred CcEEEEECCCCC------------eEEEc-CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE-----------E-
Confidence 888888654311 11111 122346666654 33445556789999997432110 1
Q ss_pred ccEEcCcCCCCCEEEEEec--CCeEEEEEcCCCEEEE
Q 011268 421 RPRILDSLRAHHVSQISTG--LYHTVVVTDRGRLFGF 455 (489)
Q Consensus 421 ~P~~v~~~~~~~v~~i~~G--~~ht~~l~~~G~v~~w 455 (489)
.... ....+..++.. ..+.++-..||.|+.|
T Consensus 301 --~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 301 --FQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVY 333 (337)
T ss_dssp --EEEE--CSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred --EEec--CCCcEEEEEECCCCCEEEEecCCCeEEEE
Confidence 1111 12345555544 3344445677877777
No 40
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=87.82 E-value=18 Score=34.04 Aligned_cols=207 Identities=8% Similarity=-0.001 Sum_probs=102.8
Q ss_pred CCEEEEEeCC---ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccE--Ee--c--cCCCCCeEEEEc---cCCeeEE
Q 011268 164 AHVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR--LV--E--ALKGVPCKQVTA---GLNFTGF 231 (489)
Q Consensus 164 ~~i~~vs~G~---~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~--~v--~--~~~~~~i~~V~~---G~~h~~~ 231 (489)
..|..++... ...+.-..||.|..|-......... ..... .. . ......|..++. +....+.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce------EeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 3677777643 4455556799999997654211110 00000 00 0 012335666664 4445666
Q ss_pred EEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-----CEEEEEEcCCcEEEecCCCCcccCCCC
Q 011268 232 LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGE 306 (489)
Q Consensus 232 Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~vy~wG~n~~gqlG~~~ 306 (489)
-..+|.|..|-.... .+...... ...+..+.... ...++-..+|.|+.|-.....
T Consensus 118 ~~~d~~i~iwd~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------ 177 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL------------QTADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------ 177 (408)
T ss_dssp EETTSEEEEEETTTT------------EEEEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC------
T ss_pred EeCCCeEEEeeCCCC------------ccceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc------
Confidence 677999999954321 11111111 13455555443 256666788999999643211
Q ss_pred CCCCcCceEeeccccCCccEEEEEecCCe---EEEEcCCCcEEEEecCCCCC-CCC---CCCCCcccceeeccCCCCcEE
Q 011268 307 QHDELQPRAIQTFRRKGIHVVRVSAGDEH---VVALDSSGYVYTWGKGYCGA-LGH---GDEIDKTLPEPLSSLKSHLAV 379 (489)
Q Consensus 307 ~~~~~~p~~i~~~~~~~~~i~~i~~g~~h---~~~lt~~G~vy~wG~n~~gq-lg~---~~~~~~~~p~~v~~~~~~~i~ 379 (489)
....+ ......|..++..... .+.-..+|.|+.|-...... +-. ........+..........|.
T Consensus 178 -----~~~~~---~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 249 (408)
T 4a11_B 178 -----CSHIL---QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249 (408)
T ss_dssp -----CCEEE---CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred -----eeeee---cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence 11111 1122356666554332 44567889999997643221 100 000000011111112233566
Q ss_pred EEEeeC--CeEEEEEcCCcEEEEEcCC
Q 011268 380 QVCARK--RKTFVLVDTGSVYGFGWMG 404 (489)
Q Consensus 380 ~v~~G~--~ht~~lt~~G~vy~wG~n~ 404 (489)
.++... .+.++...+|.|+.|-...
T Consensus 250 ~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 250 GLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 666643 3455666899999998544
No 41
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=87.80 E-value=18 Score=34.03 Aligned_cols=218 Identities=12% Similarity=0.101 Sum_probs=114.5
Q ss_pred EEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCce-eecCCCCCCCEEEEEeCC-----CEEEEEEcCCcEEEec
Q 011268 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFG 295 (489)
Q Consensus 222 V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~-~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~vy~wG 295 (489)
.+....+.+++|+.|++|..-..+.-..+ ....-.|. .+..+.+.++|+.+.+.. ...+++|++|.+.-.-
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~---r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEAS---RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCC---SSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCC---ccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 35566778889999999988543222111 11111221 112244457888887764 4788999999887654
Q ss_pred CCCCcccCCCCCCCCcCceEeeccccCCccEEE--EEecCCeEEEEcCCCcEEEEecC--CCCCCCCCCCCCcccceeec
Q 011268 296 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVYTWGKG--YCGALGHGDEIDKTLPEPLS 371 (489)
Q Consensus 296 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~h~~~lt~~G~vy~wG~n--~~gqlg~~~~~~~~~p~~v~ 371 (489)
...+-.. .. .-.....+.. +..++. +..+..+.+++|++|++|.+-.. .--.+|....-. ..+.
T Consensus 126 l~~~~~~------~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~ 193 (327)
T 3uc1_A 126 LTDFDSN------RS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMR 193 (327)
T ss_dssp GGGGCCC------CS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSC
T ss_pred HHHhhcc------cc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeec
Confidence 3332100 00 1111111211 223333 33466778889999999999876 433333322111 1233
Q ss_pred cCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEE--ecCCeEEEEE
Q 011268 372 SLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIS--TGLYHTVVVT 447 (489)
Q Consensus 372 ~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~--~G~~ht~~l~ 447 (489)
...+.+|+.+..- ..+.+++|++|.+--.=...+-..+.+... .. -.++.. .+..++.+. .+..+.++++
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G----~~-~~~l~~-~~d~lv~~~~~~~~~~i~l~T 267 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG----VL-TVMYDR-RRGRLVGALIVDDDSELYAVT 267 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC----EE-SSCCCT-TTCSEEEEEEECTTCEEEEEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc----EE-EEEecC-CCCeEEEEEEeCCCccEEEEc
Confidence 3345678777654 345777888887665543332222211110 00 000100 012344332 3567889999
Q ss_pred cCCCEEEEeCCCC
Q 011268 448 DRGRLFGFGDNER 460 (489)
Q Consensus 448 ~~G~v~~wG~n~~ 460 (489)
++|++..+-.++-
T Consensus 268 ~~G~~ir~~~~~i 280 (327)
T 3uc1_A 268 SGGGVIRTAARQV 280 (327)
T ss_dssp GGGCEEEEEGGGS
T ss_pred CCCeEEEEehhhc
Confidence 9999998854443
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=86.17 E-value=23 Score=33.41 Aligned_cols=257 Identities=12% Similarity=-0.022 Sum_probs=122.1
Q ss_pred CCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc------C---CeeEEEEc
Q 011268 164 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG------L---NFTGFLTI 234 (489)
Q Consensus 164 ~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G------~---~h~~~Lt~ 234 (489)
..|..++......+.-..||.|+.|-..... ..........+.. ....|..++.. . .+.+.-..
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLD------NENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCT------TCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcc------cccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcC
Confidence 3688888777667777889999999765421 0011111122221 22345555543 2 34455567
Q ss_pred CCcEEEEeCCCCCccCCCCCCCCCCceeecCCCC---CCCEEEEEeC------CCE-EEEEEcCCcEEEecCCCCcccCC
Q 011268 235 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE---VGSVVQIAAG------PSY-MLAVTGNGVVYSFGSGSNFCLGH 304 (489)
Q Consensus 235 ~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~---~~~i~~i~~G------~~~-~~~lt~~G~vy~wG~n~~gqlG~ 304 (489)
+|.|+.|-...... ........+..... ...|..++.. ..+ .+....+|.|+.|-......-+.
T Consensus 90 dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 90 SGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp TSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred CCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 89999985322110 00000122222210 1467766655 444 55566889999985433000000
Q ss_pred CCCCCCcCce-Eeec----cccCCccEEEEEecCC-eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccC--C--
Q 011268 305 GEQHDELQPR-AIQT----FRRKGIHVVRVSAGDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL--K-- 374 (489)
Q Consensus 305 ~~~~~~~~p~-~i~~----~~~~~~~i~~i~~g~~-h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~--~-- 374 (489)
+. .....|. .+.. .......|..++.... ..++-..+|.|+.|-.... .....+... .
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~h~~ 231 (397)
T 1sq9_A 164 SL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL-----------RPLYNFESQHSMIN 231 (397)
T ss_dssp HT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT-----------EEEEEEECCC---C
T ss_pred cc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC-----------ceeEEEeccccccc
Confidence 00 0011111 1110 0111223445544333 4444567888999875321 001111110 1
Q ss_pred -CCcEEEEEee--CCeEEEEEcC---CcEEEEEcCCCCCCCCCCCCCCCceeccEEcCc------------CCCCCEEEE
Q 011268 375 -SHLAVQVCAR--KRKTFVLVDT---GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDS------------LRAHHVSQI 436 (489)
Q Consensus 375 -~~~i~~v~~G--~~ht~~lt~~---G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~------------~~~~~v~~i 436 (489)
...|..++.. ..+.++-..+ |.|+.|-...... ...+.. .....|..+
T Consensus 232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------------IGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------------EEEECBC--------CCBSBSSCEEEE
T ss_pred cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------------cceeccCcccccccccccccCCcEEEE
Confidence 3346666553 3444445566 8888887432110 111111 023456676
Q ss_pred Eec--CCeEEEEEcCCCEEEEeCCC
Q 011268 437 STG--LYHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 437 ~~G--~~ht~~l~~~G~v~~wG~n~ 459 (489)
+.. ....+.-..||.|+.|-...
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 665 34455556789999996654
No 43
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.80 E-value=23 Score=32.35 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=115.9
Q ss_pred CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc---CCeeEEEEcCCcEEEEeCCCCCcc
Q 011268 173 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQL 249 (489)
Q Consensus 173 ~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~Lt~~G~vy~wG~n~~Gql 249 (489)
..+.+++|++|++|.---... .... ... + ..++.+|+.+.+- ....+++|++|.+.-.-..++-+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~l---p~~~----~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~- 102 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQA---LQGS----KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY- 102 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHH---HTSE----ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT-
T ss_pred CCEEEEEcCCCeEEEEEhhhC---ccCc----ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh-
Confidence 456889999999997643221 0000 000 3 3356778888661 24678899999988775443321
Q ss_pred CCCCCCCCCCceeecCCCCCCCEEEEEe--CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEE
Q 011268 250 GHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV 327 (489)
Q Consensus 250 G~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~ 327 (489)
.........+.+...++.+.. +..+.+++|++|++|.+-..+....|....- .+...+. .+.+|+
T Consensus 103 -------~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i~L~-~~d~vv 169 (276)
T 3no0_A 103 -------KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGIKLE-KNDETS 169 (276)
T ss_dssp -------CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCCCC-TTCCEE
T ss_pred -------hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEEccC-CCCEEE
Confidence 011222222333356665544 4567999999999999865554443332111 1111122 234666
Q ss_pred EEEec--CCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEE--eeCCeEEEEEcCCcEEE--EE
Q 011268 328 RVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC--ARKRKTFVLVDTGSVYG--FG 401 (489)
Q Consensus 328 ~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~--~G~~ht~~lt~~G~vy~--wG 401 (489)
.+... ..+.+++|++|.+...-..++-..+.+....... ..+.+++.+. .++...+++|++|++.. +-
T Consensus 170 ~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 170 GLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp EEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 65543 3467778999988887665543333221111111 1223344443 34567888999999988 76
Q ss_pred cCCCCCCCC
Q 011268 402 WMGFGSLGF 410 (489)
Q Consensus 402 ~n~~gqLG~ 410 (489)
.++.-.+|.
T Consensus 244 ~~~i~~~~R 252 (276)
T 3no0_A 244 QKDIPLSTK 252 (276)
T ss_dssp GGGSCBCCT
T ss_pred HHHCCCcCC
Confidence 555444443
No 44
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=84.29 E-value=26 Score=32.37 Aligned_cols=198 Identities=9% Similarity=0.034 Sum_probs=93.6
Q ss_pred CeEEEEecCc-eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEE
Q 011268 113 NQMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 187 (489)
Q Consensus 113 ~~~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G--~~~~~~lt~~G~v~~ 187 (489)
.|..++.-.. ..++. .||.|++|-..... ....+. .....|..++.. ....+....||.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE------------RLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCC------------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch------------hhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3656655432 23333 68899999543211 111111 123356666654 445566678899999
Q ss_pred EeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcC-----CcEEEEeCCCCCccCCCCCCCCCCc
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIR-----GHVHTCGSNTHGQLGHGDTLDRPTP 260 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~-----G~vy~wG~n~~GqlG~~~~~~~~~p 260 (489)
|-..... ... .+. ....|..++. ...+.++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~---------~~~---~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQ---------CVA---TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCC---------EEE---EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCc---------EEE---Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 9654311 111 111 1223444433 33344444555 8888885433221110000000111
Q ss_pred eeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC--eE
Q 011268 261 KSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HV 336 (489)
Q Consensus 261 ~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--h~ 336 (489)
..+........+..++.. ..+.++-..+|.|+.|-.... ...+..+......|..++.... ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCEE
Confidence 112222111255555544 345566677889998854321 1122222222335666665433 34
Q ss_pred EEEcCCCcEEEEec
Q 011268 337 VALDSSGYVYTWGK 350 (489)
Q Consensus 337 ~~lt~~G~vy~wG~ 350 (489)
++...+|.|+.|-.
T Consensus 234 ~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 234 ITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEETTSEEEEEET
T ss_pred EEecCCceEEEEEC
Confidence 44567888999865
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=83.04 E-value=31 Score=32.41 Aligned_cols=187 Identities=10% Similarity=-0.048 Sum_probs=92.6
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc---cCCeeEEEEcCCcEE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVH 239 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~---G~~h~~~Lt~~G~vy 239 (489)
.|..|+... ...+.-..+|.|..|-.+.. + ....+.. ....|..|+. +....+.-..||.|.
T Consensus 141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~-----------~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A-----------VLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRIL 207 (357)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTT-E-----------EEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC-c-----------EEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceE
Confidence 566666543 34444567888999954331 0 0111111 1234666654 233445567789999
Q ss_pred EEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEe
Q 011268 240 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 316 (489)
Q Consensus 240 ~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i 316 (489)
.|-... ++ ....+........+..++.. ....+.-..++.|+.|-.... ..+
T Consensus 208 ~wd~~~-~~----------~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~ 262 (357)
T 4g56_B 208 LWDTRK-PK----------PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSA 262 (357)
T ss_dssp ECCTTS-SS----------CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGC
T ss_pred EEECCC-Cc----------eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEe
Confidence 983211 10 00111111112356677654 223334467888988854221 111
Q ss_pred eccccCCccEEEEEecC---CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccC-CCCcEEEEEee---CCeEE
Q 011268 317 QTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSL-KSHLAVQVCAR---KRKTF 389 (489)
Q Consensus 317 ~~~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~-~~~~i~~v~~G---~~ht~ 389 (489)
..+......|..++... ...+.-..||.|+.|-... ++ .+..+ ....|..|+.. ....+
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~-------------~~~~~~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE-------------VFRDLSHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE-------------EEEECCCSSCEEEEEECSSSTTEEE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc-------------EeEECCCCCCEEEEEEeCCCCCEEE
Confidence 12222233566666532 2333356789999995421 11 11111 12357777754 22333
Q ss_pred EEEcCCcEEEEEcC
Q 011268 390 VLVDTGSVYGFGWM 403 (489)
Q Consensus 390 ~lt~~G~vy~wG~n 403 (489)
.-..||.|+.|=..
T Consensus 329 s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 329 TVGWDHKVLHHHLP 342 (357)
T ss_dssp EEETTSCEEEEECC
T ss_pred EEcCCCeEEEEECC
Confidence 34678999999743
No 46
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=82.99 E-value=31 Score=32.37 Aligned_cols=301 Identities=8% Similarity=-0.021 Sum_probs=139.7
Q ss_pred CCeEEEEecC--ceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeC----CCCCCEEEEEe---CCceeEEEE
Q 011268 112 GNQMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF----PSAAHVVQVSA---SENHAAFVL 180 (489)
Q Consensus 112 ~~~~~i~~G~--~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~----~~~~~i~~vs~---G~~~~~~lt 180 (489)
+.|..++.-. ...++. .||.|..|-.........- .......... .....|..++. +....+.-.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY----TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE----EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE----eccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 3466666543 333333 7899999975532221110 0000001111 12336777776 344566667
Q ss_pred cCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC-----CeeEEEEcCCcEEEEeCCCCCccCCCCCC
Q 011268 181 QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLGHGDTL 255 (489)
Q Consensus 181 ~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~ 255 (489)
.+|.|..|-..... . ...+.. ...+..+.... ...++-+.+|.|+.|-.....
T Consensus 120 ~d~~i~iwd~~~~~---------~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-------- 177 (408)
T 4a11_B 120 FDKTLKVWDTNTLQ---------T---ADVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-------- 177 (408)
T ss_dssp TTSEEEEEETTTTE---------E---EEEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--------
T ss_pred CCCeEEEeeCCCCc---------c---ceeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--------
Confidence 79999999654311 0 011111 12233333322 245555788999999543211
Q ss_pred CCCCceeecCCCCCCCEEEEEeCCC---EEEEEEcCCcEEEecCCCCcccCC-CCCCC-CcCceEeeccccCCccEEEEE
Q 011268 256 DRPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGH-GEQHD-ELQPRAIQTFRRKGIHVVRVS 330 (489)
Q Consensus 256 ~~~~p~~i~~~~~~~~i~~i~~G~~---~~~~lt~~G~vy~wG~n~~gqlG~-~~~~~-~~~p~~i~~~~~~~~~i~~i~ 330 (489)
....+... ...|..++.... ..+.-..+|.|+.|-.......-. -.... ................|..++
T Consensus 178 ---~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 178 ---CSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp ---CCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred ---eeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 11222221 146777776543 245567789999996543221000 00000 000000001111223566666
Q ss_pred ecCC--eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCC
Q 011268 331 AGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSL 408 (489)
Q Consensus 331 ~g~~--h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqL 408 (489)
.... +.+....+|.|..|-......+-.-... ..........+..........++...+|.|+.|-.....
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-- 325 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE-- 325 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceecccc-----ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--
Confidence 6443 5555678999999986542221110000 000001111122222334455666788999999743211
Q ss_pred CCCCCCCCCceeccEEcCcCCCCCEEEEEecC--CeEEEEEcCCCEEEEeCCCCCCC
Q 011268 409 GFPDRGVSDKVLRPRILDSLRAHHVSQISTGL--YHTVVVTDRGRLFGFGDNERAQL 463 (489)
Q Consensus 409 G~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~--~ht~~l~~~G~v~~wG~n~~GqL 463 (489)
....+.. ....|..++... .+.+.-..||.|..|=....-++
T Consensus 326 ------------~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 326 ------------QITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ------------EEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred ------------ceeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 1111111 123566666543 44555667999999977765444
No 47
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=82.82 E-value=32 Score=32.35 Aligned_cols=250 Identities=9% Similarity=-0.005 Sum_probs=117.0
Q ss_pred CCeEEEEecCceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC------C---ceeEEEE
Q 011268 112 GNQMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS------E---NHAAFVL 180 (489)
Q Consensus 112 ~~~~~i~~G~~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G------~---~~~~~lt 180 (489)
+.|..++.-. ..++. .||.|++|-...... .........+. .....|..++.. . ...+.-.
T Consensus 17 ~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 17 ADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SCEEEEEECS-SEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCeEEEEecC-CeEEEEcCCCEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 4467777655 33333 789999997643210 00000111122 223356666544 2 3445556
Q ss_pred cCCcEEEEeCCCCCcccCCCCCCceeccEEeccCC----CCCeEEEEcc------CCe-eEEEEcCCcEEEEeCCCCCcc
Q 011268 181 QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK----GVPCKQVTAG------LNF-TGFLTIRGHVHTCGSNTHGQL 249 (489)
Q Consensus 181 ~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~----~~~i~~V~~G------~~h-~~~Lt~~G~vy~wG~n~~Gql 249 (489)
.+|.|+.|-...... ........+.... ...|..++.. ..+ .++-+.+|.|+.|-......-
T Consensus 89 ~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 89 FSGDLLFYRITREDE-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp TTSCEEEEEEEECTT-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred CCCCEEEEEccCCcc-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 789999996443110 0000012222221 2346666544 444 555578899999954330000
Q ss_pred CCCCCCCCCCce-eecC-----CCCCCCEEEEEeCCC-EEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeecccc-
Q 011268 250 GHGDTLDRPTPK-SIAP-----LEEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR- 321 (489)
Q Consensus 250 G~~~~~~~~~p~-~i~~-----~~~~~~i~~i~~G~~-~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~- 321 (489)
+.+. .....|. .+.. ......|..++...+ ..+.-..+|.|+.|-.... ..+..+..
T Consensus 162 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~ 226 (397)
T 1sq9_A 162 SNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL--------------RPLYNFESQ 226 (397)
T ss_dssp HHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--------------EEEEEEECC
T ss_pred cccc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--------------ceeEEEecc
Confidence 0000 0011111 2211 111145666665433 4444556788888854321 11222221
Q ss_pred --C---CccEEEEEec--CCeEEEEcCC---CcEEEEecCCCCCCCCCCCCCcccceeecc------------CCCCcEE
Q 011268 322 --K---GIHVVRVSAG--DEHVVALDSS---GYVYTWGKGYCGALGHGDEIDKTLPEPLSS------------LKSHLAV 379 (489)
Q Consensus 322 --~---~~~i~~i~~g--~~h~~~lt~~---G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~------------~~~~~i~ 379 (489)
. ...|..++.. ..+.++-..+ |.|+.|-......+ ..+.. .....|.
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-----------GSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-----------EEECBC--------CCBSBSSCEE
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-----------ceeccCcccccccccccccCCcEE
Confidence 1 3356666553 3344445566 88888875431111 11111 0233566
Q ss_pred EEEee--CCeEEEEEcCCcEEEEEc
Q 011268 380 QVCAR--KRKTFVLVDTGSVYGFGW 402 (489)
Q Consensus 380 ~v~~G--~~ht~~lt~~G~vy~wG~ 402 (489)
.++.. ....+.-..+|.|+.|-.
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEc
Confidence 66654 344455567899999974
No 48
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=82.60 E-value=30 Score=31.87 Aligned_cols=193 Identities=8% Similarity=-0.080 Sum_probs=101.1
Q ss_pred CCCeEEEEecCc----eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcC
Q 011268 111 AGNQMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQS 182 (489)
Q Consensus 111 ~~~~~~i~~G~~----h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G--~~~~~~lt~~ 182 (489)
.+.|..++.-.. ..++. .||.|..|-....++. ....+. .....|..++.. ....+.-..|
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT----------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE----------EEEEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce----------eEEEec-cccCCEEEEEECcCCCEEEEEcCC
Confidence 345677766554 44444 6899999975432210 101111 123357766654 3455666778
Q ss_pred CcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cC--CeeEEEEcCCcEEEEeCCCCCccCCCCCCCCC
Q 011268 183 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP 258 (489)
Q Consensus 183 G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~--~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~ 258 (489)
|.|..|-..... +..... ....|..++. .. .+.+.-..+|.|+.|-.... .
T Consensus 108 g~v~iwd~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~ 162 (368)
T 3mmy_A 108 KTAKMWDLSSNQ-------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------N 162 (368)
T ss_dssp SEEEEEETTTTE-------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------S
T ss_pred CcEEEEEcCCCC-------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------c
Confidence 999999654311 111111 2234666654 22 23444567899999932210 1
Q ss_pred CceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCe---
Q 011268 259 TPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH--- 335 (489)
Q Consensus 259 ~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h--- 335 (489)
....+.. ...+..+..-....++.+.++.+..|-...... ....+.........+..+......
T Consensus 163 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 163 PMMVLQL---PERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp CSEEEEC---SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred EEEEEec---CCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCC
Confidence 1111221 146777777777888888999999886533211 011111111122234444443333
Q ss_pred -EEEEcCCCcEEEEecCC
Q 011268 336 -VVALDSSGYVYTWGKGY 352 (489)
Q Consensus 336 -~~~lt~~G~vy~wG~n~ 352 (489)
.++-..+|.|..|-...
T Consensus 230 ~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEEETTSEEEEEESSC
T ss_pred eEEEecCCCcEEEEecCC
Confidence 55667899999987643
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=82.55 E-value=34 Score=32.49 Aligned_cols=227 Identities=8% Similarity=-0.054 Sum_probs=109.3
Q ss_pred CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCcc
Q 011268 172 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQL 249 (489)
Q Consensus 172 G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~Gql 249 (489)
.....+.-..+|.|..|-... + .+..........|..++.. ..+.+.-..||.|+.|-.....
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~-~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-- 172 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNF-N------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-- 172 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTS-C------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--
T ss_pred CCCEEEEEECCCCEEEEeCCC-c------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--
Confidence 334455557788999995332 1 1111111122345666543 3345555778999999543211
Q ss_pred CCCCCCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEE
Q 011268 250 GHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV 327 (489)
Q Consensus 250 G~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~ 327 (489)
....+.... ..|..++.. ....+.-..+|.|..|-......+. .+.........+.
T Consensus 173 ---------~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 173 ---------NPRTLIGHR--ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH-----------TFNRKENPHDGVN 230 (420)
T ss_dssp ---------CCEEEECCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-----------EECBTTBTTCCEE
T ss_pred ---------CceEEcCCC--CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE-----------EeecCCCCCCCcc
Confidence 112222221 456666654 3455566678889888543211110 0000000111122
Q ss_pred EEEe-----------------------cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee
Q 011268 328 RVSA-----------------------GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR 384 (489)
Q Consensus 328 ~i~~-----------------------g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G 384 (489)
.++. ...+.++-+.+|.|..|-..... .+..+.......|..++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----------QTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----------EEEEECCTTSSCEEEEEEC
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----------eeEEcccccCCCceeEEEe
Confidence 2221 12233445678888888653211 1122222223356677664
Q ss_pred CC---eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEE-EcCCCEEEEeCCC
Q 011268 385 KR---KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVV-TDRGRLFGFGDNE 459 (489)
Q Consensus 385 ~~---ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l-~~~G~v~~wG~n~ 459 (489)
.. ..+.-..+|.|+.|-.....+ ....+.......|..+.......++. ..||.|..|-...
T Consensus 300 ~~~~~~l~~g~~dg~i~vwd~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 300 GNNANYIYAGYENGMLAQWDLRSPEC-------------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTS-------------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcC-------------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 33 556667889999997432111 01111111233566665554444443 3688899997555
No 50
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.79 E-value=35 Score=32.09 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=121.6
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC-----CeeEEEEcCCcEEEEeC
Q 011268 169 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 243 (489)
Q Consensus 169 vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~Lt~~G~vy~wG~ 243 (489)
.+....+.+++|+.|++|..-...-...+....+. .....++..++.+|+.+.+.. ...+++|++|.+.-.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ--HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE--EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE--EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 44566778899999999988654433222221111 111223334577888887654 46788899998887654
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCEEEEEEcCCcEEEecCC--CCcccCCCCCCCCcCceEeecc
Q 011268 244 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQHDELQPRAIQTF 319 (489)
Q Consensus 244 n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~vy~wG~n--~~gqlG~~~~~~~~~p~~i~~~ 319 (489)
..+-.. .........+.+...++.+ +.+..+.+++|++|++|.+-.. .--..|....- +++..+
T Consensus 127 ~~~~~~-------~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L 194 (327)
T 3uc1_A 127 TDFDSN-------RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRF 194 (327)
T ss_dssp GGGCCC-------CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCC
T ss_pred HHhhcc-------ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecC
Confidence 332110 0111222223233455544 3467889999999999998766 43333322111 112222
Q ss_pred ccCCccEEEEEecC--CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCC-CCcEEEEE--eeCCeEEEEEcC
Q 011268 320 RRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK-SHLAVQVC--ARKRKTFVLVDT 394 (489)
Q Consensus 320 ~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~-~~~i~~v~--~G~~ht~~lt~~ 394 (489)
. .+.+|+.+..-. .+.+++|++|.+...-..++-..+.+...... +.... +..++.+. .+....+++|++
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~----~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT----VMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES----SCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE----EEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 2 344677766543 35777899997776654433322221110000 11001 22344433 356788999999
Q ss_pred CcEEEEEcCCCCCCCC
Q 011268 395 GSVYGFGWMGFGSLGF 410 (489)
Q Consensus 395 G~vy~wG~n~~gqLG~ 410 (489)
|++.-+-...--.+|.
T Consensus 270 G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 270 GGVIRTAARQVRKAGR 285 (327)
T ss_dssp GCEEEEEGGGSCBCCT
T ss_pred CeEEEEehhhccccCC
Confidence 9999887655444444
No 51
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=81.04 E-value=37 Score=31.96 Aligned_cols=235 Identities=12% Similarity=0.065 Sum_probs=110.2
Q ss_pred CeEEEEecCc-eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC--CceeEEEEcCCcEEE
Q 011268 113 NQMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 187 (489)
Q Consensus 113 ~~~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G--~~~~~~lt~~G~v~~ 187 (489)
.+..++.-.. ..++. .+|.|+.|- ..++ ....+. .....|..++.. ....+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA-----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC-----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC-----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 4666655432 22333 788888885 1111 111111 123357777654 345566677899999
Q ss_pred EeCCCCCcccCCCCCCceeccEEec----cCCCCCeEEEEc-cCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCcee
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTA-GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 262 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~----~~~~~~i~~V~~-G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~ 262 (489)
|-......+..-.... ..+..+. ......+..++. .....++.+.+|.|+.|-.... .....
T Consensus 176 wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-----------~~~~~ 242 (425)
T 1r5m_A 176 WNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-----------TPTGK 242 (425)
T ss_dssp EETTTTEEEEEECCC-----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-----------SCSEE
T ss_pred EECCCCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-----------ceeee
Confidence 9764421111000000 0000000 000000111111 1234555677888998854321 11112
Q ss_pred ecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC-eEEEE
Q 011268 263 IAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-HVVAL 339 (489)
Q Consensus 263 i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-h~~~l 339 (489)
+... ...|..++.. ..+.+.-..+|.|+.|-.... .....+ ......|..++.... ..++.
T Consensus 243 ~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~---~~~~~~i~~~~~~~~~~l~~~ 306 (425)
T 1r5m_A 243 LIGH--HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNCF---YGHSQSIVSASWVGDDKVISC 306 (425)
T ss_dssp ECCC--SSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEEE---CCCSSCEEEEEEETTTEEEEE
T ss_pred eccC--CCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceEe---cCCCccEEEEEECCCCEEEEE
Confidence 2211 1456665543 445666667889999854321 011111 112234555555433 55556
Q ss_pred cCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCeEEEEEcCCcEEEEEc
Q 011268 340 DSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGW 402 (489)
Q Consensus 340 t~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~ 402 (489)
..+|.|+.|-..... +..........|..++.. ....++-..+|.|+.|-.
T Consensus 307 ~~d~~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNT------------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp ETTSEEEEEETTTTE------------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eCCCcEEEEECCCCc------------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 788999999753210 111111123346666554 334455567889999974
No 52
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=80.88 E-value=24 Score=32.30 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.5
Q ss_pred ceeEEeeCCcEEEEeCCC
Q 011268 122 YHTLLISNSSVFSCGSSL 139 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n~ 139 (489)
.|++++.+++||++|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 466666888999999643
No 53
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=79.11 E-value=68 Score=33.80 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=83.7
Q ss_pred CCEEEEEeC----CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc----CCeeEEEEcC
Q 011268 164 AHVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIR 235 (489)
Q Consensus 164 ~~i~~vs~G----~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~Lt~~ 235 (489)
..|..++.. ....+.-..||.|+.|-.... ...+..........|..++.. ....+.-+.+
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 367777764 455666778999999964331 000111111123346666554 4456666788
Q ss_pred CcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---------------CEEEEEEcCCcEEEecCCCCc
Q 011268 236 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNF 300 (489)
Q Consensus 236 G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~---------------~~~~~lt~~G~vy~wG~n~~g 300 (489)
|.|..|-...... .....+.... ..|..++... ...+.-..+|.|+.|-....
T Consensus 123 g~I~vwdl~~~~~---------~~~~~~~~~~--~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~- 190 (753)
T 3jro_A 123 GKVSVVEFKENGT---------TSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD- 190 (753)
T ss_dssp SEEEEEECCSSSC---------CCCEEEECCS--SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT-
T ss_pred CcEEEEEeecCCC---------cceeEeecCC--CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC-
Confidence 9999995432211 1112222211 4566666543 44566667898988843221
Q ss_pred ccCCCCCCCCcCceEeeccccCCccEEEEEecCC-----eEEEEcCCCcEEEEecCC
Q 011268 301 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGY 352 (489)
Q Consensus 301 qlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~-----h~~~lt~~G~vy~wG~n~ 352 (489)
......+..+......|..++.... ..+.-..+|.|+.|-...
T Consensus 191 ---------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 191 ---------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ---------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ---------cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 0011122222222345777766543 344456789999997643
No 54
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=78.98 E-value=47 Score=31.83 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=95.1
Q ss_pred CCeEEEEecC-c-eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCC--ceeEEEEcCCcE
Q 011268 112 GNQMQITTGR-Y-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQV 185 (489)
Q Consensus 112 ~~~~~i~~G~-~-h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~--~~~~~lt~~G~v 185 (489)
+.|..++.-. . ..++. .||.|.+|-..... .+ ... .+ ...+.....|..++... ...+.-..||.|
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~-~~--~~~----~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 135 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEII-VG--EVY----SS-SLTYDCSSTVTQITMIPNFDAFAVSSKDGQI 135 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH-TT--CCC----SC-SEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccc-cC--ccc----ce-eeeccCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 4466666554 2 23333 78899999643100 00 000 00 01111233577776643 455566778999
Q ss_pred EEEeCC--CCCcccCCCCCCceeccEEeccC------CCCCeEEEEc----cCCeeEEEEcCCcEEEEeCCCCCccCCCC
Q 011268 186 FTCGDN--SSFCCGHRDTNRPIFRPRLVEAL------KGVPCKQVTA----GLNFTGFLTIRGHVHTCGSNTHGQLGHGD 253 (489)
Q Consensus 186 ~~wG~n--~~gqlg~~~~~~~~~~p~~v~~~------~~~~i~~V~~----G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~ 253 (489)
..|-.. ..+++- .......+..+ ....+..+.. .....+.-+.+|.|+.|-....
T Consensus 136 ~vwd~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------- 202 (437)
T 3gre_A 136 IVLKVNHYQQESEV------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------- 202 (437)
T ss_dssp EEEEEEEEEETTEE------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-------
T ss_pred EEEEeccccCCcee------eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------
Confidence 888542 111110 00000111110 2233444442 2445555678899999953221
Q ss_pred CCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccc-cCCccEEEEE
Q 011268 254 TLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVRVS 330 (489)
Q Consensus 254 ~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~-~~~~~i~~i~ 330 (489)
.....+........|..++.. ..+.+.-+.+|.|..|-.... ..+..+. .....|..++
T Consensus 203 ----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~ 264 (437)
T 3gre_A 203 ----ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------------VLIRSWSFGDHAPITHVE 264 (437)
T ss_dssp ----CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------------EEEEEEBCTTCEEEEEEE
T ss_pred ----eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------------cEEEEEecCCCCceEEEE
Confidence 111122221112567777764 344555677889999954321 1122111 1222466654
Q ss_pred ecC----C--eEEEEcCCCcEEEEecC
Q 011268 331 AGD----E--HVVALDSSGYVYTWGKG 351 (489)
Q Consensus 331 ~g~----~--h~~~lt~~G~vy~wG~n 351 (489)
... + ..+.-..+|.|..|-..
T Consensus 265 ~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 265 VCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp ECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred eccccCCCccEEEEEcCCCcEEEEEcC
Confidence 332 1 23334678889999764
No 55
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.96 E-value=72 Score=33.48 Aligned_cols=230 Identities=15% Similarity=0.069 Sum_probs=110.1
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEE--EccCCeeEEEEcCCcEEE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV--TAGLNFTGFLTIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V--~~G~~h~~~Lt~~G~vy~ 240 (489)
+|..++... ...++-..+|.|..|-..... ....+.. ....|..+ +......++-+.+|.|+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV------------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE------------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 455555443 334444568889999643310 0111111 12234444 334455566678899999
Q ss_pred EeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
|-..... ....+.... ..|..++... .+.+.-..+|.|..|-..... .....
T Consensus 82 w~~~~~~-----------~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-------------~~~~~ 135 (814)
T 3mkq_A 82 FNYNTGE-----------KVVDFEAHP--DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-------------ALEQT 135 (814)
T ss_dssp EETTTCC-----------EEEEEECCS--SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-------------EEEEE
T ss_pred EECCCCc-----------EEEEEecCC--CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-------------eEEEE
Confidence 9543211 111222111 4566666553 345556678888888532110 11111
Q ss_pred cccCCccEEEEEecC---CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEe----eCCeEEEE
Q 011268 319 FRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA----RKRKTFVL 391 (489)
Q Consensus 319 ~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~----G~~ht~~l 391 (489)
+......|..++... ...+.-..+|.|+.|-..... ....+.......+..++. .....++-
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 222223466665543 344445778999999753211 011111111122333333 33344555
Q ss_pred EcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCC--eEEEEEcCCCEEEEeCCC
Q 011268 392 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY--HTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 392 t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~--ht~~l~~~G~v~~wG~n~ 459 (489)
..+|.|..|-.... .....+.. ....|..++.... ..+.-..||.|+.|-...
T Consensus 205 ~~dg~i~~~d~~~~--------------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 205 SDDLTIKIWDYQTK--------------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CTTSEEEEEETTTT--------------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred eCCCEEEEEECCCC--------------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 67888999863210 01111111 1234655554433 344455678888886554
No 56
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.81 E-value=52 Score=31.71 Aligned_cols=198 Identities=7% Similarity=0.022 Sum_probs=97.4
Q ss_pred eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc---cCCeeEEEEcCCcEEEEeCCCCCccCC
Q 011268 175 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCGSNTHGQLGH 251 (489)
Q Consensus 175 ~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~---G~~h~~~Lt~~G~vy~wG~n~~GqlG~ 251 (489)
..+.-..+|.|..|-.+..... .....+..........|..|+. +....+.-..+|.|+.|-......
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKE------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBG------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---
T ss_pred eEEEEeCCCeEEEEeCCCCCCC------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---
Confidence 5555567899999976652211 0111111111112234666665 344445566899999995542210
Q ss_pred CCCCCCCCce-eecCCCCCCCEEEEEeCC---CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEE
Q 011268 252 GDTLDRPTPK-SIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVV 327 (489)
Q Consensus 252 ~~~~~~~~p~-~i~~~~~~~~i~~i~~G~---~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~ 327 (489)
..+. .+... ...|..++... ...+.-..+|.|..|-.....+ |. ..+......|.
T Consensus 267 ------~~~~~~~~~~--~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~--~~~~~h~~~v~ 325 (430)
T 2xyi_A 267 ------SKPSHTVDAH--TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KL--HSFESHKDEIF 325 (430)
T ss_dssp ------SSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CS--EEEECCSSCEE
T ss_pred ------CcceeEeecC--CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------Ce--EEeecCCCCEE
Confidence 1111 11111 14677777643 2344556788999986543211 11 11111233566
Q ss_pred EEEecCC---eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCC--CCcEEEEEeeCC---eEEEEEcCCcEEE
Q 011268 328 RVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQVCARKR---KTFVLVDTGSVYG 399 (489)
Q Consensus 328 ~i~~g~~---h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~--~~~i~~v~~G~~---ht~~lt~~G~vy~ 399 (489)
.|+.... ..+.-..+|.|..|-....+..-.........|..+.... ...|..++.... ..+....+|.|..
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 6666443 2344567889999976543221100000000122332222 334776665433 4455667888888
Q ss_pred EEc
Q 011268 400 FGW 402 (489)
Q Consensus 400 wG~ 402 (489)
|-.
T Consensus 406 w~~ 408 (430)
T 2xyi_A 406 WQM 408 (430)
T ss_dssp EEE
T ss_pred eEc
Confidence 874
No 57
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=77.27 E-value=53 Score=31.59 Aligned_cols=196 Identities=8% Similarity=0.019 Sum_probs=94.5
Q ss_pred eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEe---CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCc
Q 011268 128 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA---SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRP 204 (489)
Q Consensus 128 ~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~---G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~ 204 (489)
.+|.|..|-........ ....+..........|..|+. +....+....+|.|+.|-...... ..
T Consensus 202 ~dg~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------~~- 268 (430)
T 2xyi_A 202 DDHTICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------SK- 268 (430)
T ss_dssp TTSCEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------SS-
T ss_pred CCCeEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------Cc-
Confidence 67888888765422110 011111111122336777776 344555667899999997654210 00
Q ss_pred eeccEEeccCCCCCeEEEEccC---CeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--
Q 011268 205 IFRPRLVEALKGVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-- 279 (489)
Q Consensus 205 ~~~p~~v~~~~~~~i~~V~~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-- 279 (489)
....+. .....|..|+... ...+.-..+|.|..|-....++ ....+... ...|..++...
T Consensus 269 --~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~~h--~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 269 --PSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFESH--KDEIFQVQWSPHN 333 (430)
T ss_dssp --CSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEECC--SSCEEEEEECSSC
T ss_pred --ceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEeecC--CCCEEEEEECCCC
Confidence 011111 1123455555432 2233446789999996543221 11111111 14677777653
Q ss_pred -CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC---eEEEEcCCCcEEEEecC
Q 011268 280 -SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKG 351 (489)
Q Consensus 280 -~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n 351 (489)
...+.-..+|.|..|-....+............|..+..+......|..++-... ..+....+|.|..|-..
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 3345556788888886543221100000000012233333223335766665443 34446778888888753
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=77.02 E-value=45 Score=30.55 Aligned_cols=194 Identities=10% Similarity=0.004 Sum_probs=96.5
Q ss_pred CeEEEEecCc----eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEE--------eCCceeEE
Q 011268 113 NQMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS--------ASENHAAF 178 (489)
Q Consensus 113 ~~~~i~~G~~----h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs--------~G~~~~~~ 178 (489)
.+..++.... ..++. .+|.|..|-.....+. ...+. .....|..+. ......+.
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP-----------VYSVK-GHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC-----------SEEEC-CCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc-----------EEEEE-ecccceEEEeeccccccCCCccEEEE
Confidence 4566665543 33444 6888999865432100 01111 1223466553 23345566
Q ss_pred EEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCC---CCCeEEEE------ccCCeeEEEEcCCcEEEEeCCCCCcc
Q 011268 179 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK---GVPCKQVT------AGLNFTGFLTIRGHVHTCGSNTHGQL 249 (489)
Q Consensus 179 lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~---~~~i~~V~------~G~~h~~~Lt~~G~vy~wG~n~~Gql 249 (489)
-..+|.|..|-...... ....+.... ...|..++ ....+.++-..+|.|+.|-....
T Consensus 135 ~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--- 200 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD-----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM--- 200 (357)
T ss_dssp EETTSCEEEECTTSCSS-----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT---
T ss_pred EeCCCeEEEEeCCCCCC-----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC---
Confidence 67889999996543110 111111111 22455555 33444555567899999954221
Q ss_pred CCCCCCCCCCceeecCCCCCCCEEEEEeC-----CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCc
Q 011268 250 GHGDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 324 (489)
Q Consensus 250 G~~~~~~~~~p~~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~ 324 (489)
.+...... ...|..++.. ....++-..+|.|+.|-...... ........+.....
T Consensus 201 ---------~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 201 ---------ALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP---------TKGFASVSEKAHKS 260 (357)
T ss_dssp ---------EEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET---------TTEEEEEEEECCSS
T ss_pred ---------ceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc---------ccceeeeccCCCcC
Confidence 11111111 1467777765 35566667789999885432110 00000001112233
Q ss_pred cEEEEEecCCe---EEEEcCCCcEEEEecCC
Q 011268 325 HVVRVSAGDEH---VVALDSSGYVYTWGKGY 352 (489)
Q Consensus 325 ~i~~i~~g~~h---~~~lt~~G~vy~wG~n~ 352 (489)
.|..++..... .+.-..+|.|+.|-...
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 57677665543 33456789999997643
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=77.01 E-value=43 Score=30.32 Aligned_cols=187 Identities=11% Similarity=0.018 Sum_probs=88.8
Q ss_pred CeEEEEecCce-eEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCC--ceeEEEEcCCcEEE
Q 011268 113 NQMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFT 187 (489)
Q Consensus 113 ~~~~i~~G~~h-~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~--~~~~~lt~~G~v~~ 187 (489)
.|..++.-... .++. .||.|..|...... ....+ ......|..++... ...+.-..||.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------FEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------EEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc------------cchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 35555543322 2333 68899999753211 01111 11223566666543 34445567889999
Q ss_pred EeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecC
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 265 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~ 265 (489)
|-..... .. ..+.. ....|..++. .....+.-..+|.|..|-..... ....+..
T Consensus 92 wd~~~~~---------~~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~~ 147 (312)
T 4ery_A 92 WDVSSGK---------CL---KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-----------CLKTLPA 147 (312)
T ss_dssp EETTTCC---------EE---EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-----------EEEEECC
T ss_pred EECCCCc---------EE---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-----------EEEEecC
Confidence 9654311 00 11111 1123444433 23344445678889988432110 0111111
Q ss_pred CCCCCCEEEEEeCC--CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe--cCCeEEEEcC
Q 011268 266 LEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDS 341 (489)
Q Consensus 266 ~~~~~~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~ 341 (489)
. ...|..++... ...+.-..+|.|..|-...... ...+. ......+..++. .....++-+.
T Consensus 148 ~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 148 H--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----------LKTLI--DDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp C--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC--CSSCCCEEEEEECTTSSEEEEEET
T ss_pred C--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eeEEe--ccCCCceEEEEECCCCCEEEEEcC
Confidence 1 14566666543 3455566788888885432110 01111 111123443433 3345555678
Q ss_pred CCcEEEEecC
Q 011268 342 SGYVYTWGKG 351 (489)
Q Consensus 342 ~G~vy~wG~n 351 (489)
+|.|..|-..
T Consensus 213 d~~i~iwd~~ 222 (312)
T 4ery_A 213 DNTLKLWDYS 222 (312)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEEECC
Confidence 8999999753
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.69 E-value=78 Score=33.20 Aligned_cols=229 Identities=10% Similarity=-0.037 Sum_probs=110.0
Q ss_pred eEEEEecCce-eEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEe--CCceeEEEEcCCcEEEE
Q 011268 114 QMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA--SENHAAFVLQSGQVFTC 188 (489)
Q Consensus 114 ~~~i~~G~~h-~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~--G~~~~~~lt~~G~v~~w 188 (489)
+..++.-... .++. .+|.|..|-... |+ ....+. .....|..++. .....+.-+.+|.|..|
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~-----------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYET-QV-----------EVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTT-TE-----------EEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCC-Cc-----------eEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 5555543322 2333 688888886432 11 111222 12234555543 34456666788999999
Q ss_pred eCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCC
Q 011268 189 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPL 266 (489)
Q Consensus 189 G~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~ 266 (489)
-...... ...+.. ....|..++.. ..+.+.-+.+|.|..|-..... .....+...
T Consensus 83 ~~~~~~~------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~~~ 139 (814)
T 3mkq_A 83 NYNTGEK------------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFEGH 139 (814)
T ss_dssp ETTTCCE------------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEECC
T ss_pred ECCCCcE------------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEcCC
Confidence 7544111 111111 12235555543 3344555678889888532111 111112211
Q ss_pred CCCCCEEEEEeCC---CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe--cCCeEEEEcC
Q 011268 267 EEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDS 341 (489)
Q Consensus 267 ~~~~~i~~i~~G~---~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~ 341 (489)
...|..++... ...+.-..+|.|..|-.... .....+.............+. .....++-..
T Consensus 140 --~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 140 --EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp --SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred --CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 14677777643 34555667899999954221 011111111111222333333 3345555678
Q ss_pred CCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeC--CeEEEEEcCCcEEEEEcC
Q 011268 342 SGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVDTGSVYGFGWM 403 (489)
Q Consensus 342 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~ht~~lt~~G~vy~wG~n 403 (489)
+|.|..|-.... .....+.. ....|..++... ...+....+|.|+.|-..
T Consensus 207 dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 207 DLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp TSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 899999965321 01111211 223465555443 334555678999999743
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=75.72 E-value=0.59 Score=48.20 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=27.4
Q ss_pred ccccCChHHHHHHHhcCCCC-ccccccccccccccccc
Q 011268 9 SIEELPSHLIFEILTSGRLS-AVDLAHLELTSKTFGGS 45 (489)
Q Consensus 9 ~~~~lp~~i~~~~l~~~~L~-~~d~~~L~~t~~~f~~~ 45 (489)
.+.+||+||+.+||. +|+ ++|+++.+.+||.++..
T Consensus 5 ~~~~LPdevL~~If~--~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFS--FIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHH--TCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHh--hcCCchhHHHHHHHHHHHHHh
Confidence 357899999999999 999 99999999999966643
No 62
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=75.66 E-value=46 Score=30.06 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCEEEEEeC-CceeEEEEcCCc-EEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcE-EE
Q 011268 164 AHVVQVSAS-ENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV-HT 240 (489)
Q Consensus 164 ~~i~~vs~G-~~~~~~lt~~G~-v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~v-y~ 240 (489)
.++.-..++ ....++++.+|+ +|.++.... . . .....|..+....+-.+.-...+.....+++.+|++ |.
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~----~--~-~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~ 160 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETG----I--E-RPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNS 160 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCS----C--S-SGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCC----C--C-cccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEE
Confidence 345444555 556666777887 466654221 0 0 011122222223333444334445556667776753 55
Q ss_pred EeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcC-C-cEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGN-G-VVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~-G-~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
++.. ..|..+..+.. .++.-........++++.+ | .+|.++.+... ......|.-+..
T Consensus 161 ~~~~-------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~~~ 220 (276)
T 3no2_A 161 VKLS-------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQLFP 220 (276)
T ss_dssp EECS-------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEEEE
T ss_pred EECC-------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------CccccccccceE
Confidence 5432 11222222322 3455444444456777776 6 44555422110 001122333333
Q ss_pred cccCCccEEEEEe--c---------CCeEEEEcCCCcEEEEecCCCCCCCC
Q 011268 319 FRRKGIHVVRVSA--G---------DEHVVALDSSGYVYTWGKGYCGALGH 358 (489)
Q Consensus 319 ~~~~~~~i~~i~~--g---------~~h~~~lt~~G~vy~wG~n~~gqlg~ 358 (489)
.... .+. |+. | ....+.++.+|++ .|-.+....+|.
T Consensus 221 ~~~G--~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 221 LQNG--GLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp CTTS--CEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred cCCC--CEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 3211 232 333 2 2357778888876 666655555554
No 63
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=75.01 E-value=62 Score=31.19 Aligned_cols=269 Identities=10% Similarity=0.029 Sum_probs=115.3
Q ss_pred EeeCCCCCCEEEEEeCCceeEEEEcCCc-EEEEeCCC-CCcccCCCCCCceeccEEeccCCCCCeEEEEcc---------
Q 011268 157 RINFPSAAHVVQVSASENHAAFVLQSGQ-VFTCGDNS-SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--------- 225 (489)
Q Consensus 157 ~~~~~~~~~i~~vs~G~~~~~~lt~~G~-v~~wG~n~-~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--------- 225 (489)
.+.......+..|..|...-++++.||+ +|...... .+.-|. ....-..+..-....+..|..+
T Consensus 63 ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~-----~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 63 VIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGE-----RTDYVEVFDPVTLLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp EEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEE-----EEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred EEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCC-----CCCEEEEEECCCCeEEEEEECCCccccccCC
Confidence 3444444456677777765589999987 77653210 000000 0011112222223334555544
Q ss_pred CCeeEEEEcCCc-EEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCC
Q 011268 226 LNFTGFLTIRGH-VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGH 304 (489)
Q Consensus 226 ~~h~~~Lt~~G~-vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~ 304 (489)
.-+.++++.||+ +|.......+.+..-+......-..|+.. ....-...|....++++.||++........+....
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---CcceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 356789998886 67763221121111111111111111110 01111233555556888899888776544343311
Q ss_pred CCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCC-CcEEEEEe
Q 011268 305 GEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKS-HLAVQVCA 383 (489)
Q Consensus 305 ~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~-~~i~~v~~ 383 (489)
.. .....|.....+ .+. .......+.++++.+|+||+.-..... .....+..+ +.. ........
T Consensus 215 ~~-~~~~~~~~~~~~----~~~-~~~~~dG~~~~vs~~g~V~v~d~~~~~-------~~v~~~~~~--~~~~~~~~g~~p 279 (386)
T 3sjl_D 215 TH-TEVFHPEDEFLI----NHP-AYSQKAGRLVWPTYTGKIHQIDLSSGD-------AKFLPAVEA--LTEAERADGWRP 279 (386)
T ss_dssp EE-CCCCSCTTSCBC----SCC-EEETTTTEEEEEBTTSEEEEEECTTSS-------CEECCCEES--SCHHHHHTTEEE
T ss_pred ee-cceecccccccc----ccc-eeEcCCCcEEEEeCCCEEEEEECCCCc-------ceeecceec--cccccccccccC
Confidence 00 000000000000 011 111233456778888999987532100 000001100 000 00001233
Q ss_pred eCCeEEEEEcC-CcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecC-CeEEEEEcCCC--EEE
Q 011268 384 RKRKTFVLVDT-GSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL-YHTVVVTDRGR--LFG 454 (489)
Q Consensus 384 G~~ht~~lt~~-G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~-~ht~~l~~~G~--v~~ 454 (489)
+....++++.+ +++|.--.. .+ .+.. ......-..++.-..+.+..|..|. -+.++++.||+ +|+
T Consensus 280 ~g~q~~a~~~~~~~lyV~~~~-~~---~~~h--k~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 280 GGWQQVAYHRALDRIYLLVDQ-RD---EWRH--KTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp CSSSCEEEETTTTEEEEEEEE-CC---TTCT--TSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEE
T ss_pred CCcceeeECCCCCeEEEEecc-cc---cccc--CCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEE
Confidence 45555666644 556663211 01 1110 1111222334433455677777774 45889999987 565
No 64
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.75 E-value=56 Score=30.58 Aligned_cols=227 Identities=11% Similarity=0.056 Sum_probs=119.6
Q ss_pred EEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC-----CeeEEEEcCCcEEEEe
Q 011268 168 QVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCG 242 (489)
Q Consensus 168 ~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~-----~h~~~Lt~~G~vy~wG 242 (489)
.++.+..+.+++|+.|++|..-...--..+....+.+ ....++..++.+|+.+..-. .+.+++|++|.+.-.-
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH--IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC--hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 3566788899999999999987655333332222211 11223333566777664432 3578889999887764
Q ss_pred CCCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccc
Q 011268 243 SNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR 320 (489)
Q Consensus 243 ~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~ 320 (489)
..++-... +......-.+.+...++.+ ..+.++.+++|++|.++.+-..+.-..|.. ...++...+.
T Consensus 123 l~e~~~~~------r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-----a~GV~~i~L~ 191 (323)
T 1wp5_A 123 LKHYKAQR------YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR-----AAGVKGMNLK 191 (323)
T ss_dssp GGGGCCSC------CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS-----CCCEECCCCC
T ss_pred HHHhhhcc------ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC-----CcCEEEEEeC
Confidence 43321110 0112222223333455543 336788999999999998876554333331 1222222222
Q ss_pred cCCccEEEEEec--CC-eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEE--EeeCCeEEEEEcCC
Q 011268 321 RKGIHVVRVSAG--DE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTG 395 (489)
Q Consensus 321 ~~~~~i~~i~~g--~~-h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~ht~~lt~~G 395 (489)
.+..|+.+..- .. ..+.+|++|.....-...+-..+.+.. -...++..+. .+..++.+ ..+....++++++|
T Consensus 192 -~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~~v~~~~~i~~it~~g 268 (323)
T 1wp5_A 192 -EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFVVAQDSDTIYLQTEKS 268 (323)
T ss_dssp -TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEEEECTTCEEEEEETTS
T ss_pred -CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEEEeCCCCeEEEEeCCC
Confidence 23345555331 22 567778888655544433322222111 1111111111 12234432 34567888999999
Q ss_pred cEEEEEcCCCCCCCC
Q 011268 396 SVYGFGWMGFGSLGF 410 (489)
Q Consensus 396 ~vy~wG~n~~gqLG~ 410 (489)
++.-.--++....|.
T Consensus 269 ~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 269 FIETIKVGDIRFSDR 283 (323)
T ss_dssp CEEEEEGGGSCBCCS
T ss_pred eEEEEEhhhcCccCc
Confidence 998877665555443
No 65
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=73.23 E-value=36 Score=27.65 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=61.0
Q ss_pred CCCeEEEEccC-CeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CCEEEEEEcCCcEEE
Q 011268 216 GVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYS 293 (489)
Q Consensus 216 ~~~i~~V~~G~-~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~~~~~lt~~G~vy~ 293 (489)
....+++-|-. .+.+-+..||.|-.-... .+...-..+.... ..++.|-|- ..+-+++..+|+||.
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~----------~~~~s~lei~sv~--~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPEG--NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEE--TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCC----------CCCceEEEEEEcc--CCEEEEEEecCCEEEeECCCCCEee
Confidence 44568888865 566778889999754221 1112222222221 357888876 578889999999997
Q ss_pred ecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe-cCCeEEEEcCCCcEEE
Q 011268 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA-GDEHVVALDSSGYVYT 347 (489)
Q Consensus 294 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~-g~~h~~~lt~~G~vy~ 347 (489)
--. ..+.....++..... -.+.|.. -....++++.+|++|.
T Consensus 97 s~~----------~t~ecsflEi~~en~---y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD----------RSDTHIQFQISPEGN---GEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp ECC----------TTCGGGCEEEEECST---TCEEEEETTTCCEEEECTTSBEEE
T ss_pred ccc----------CCCCceEEEEEeecC---cEEEEEEecCCEEEEECCCcCCcc
Confidence 422 111222223222211 2223332 2234789999999996
No 66
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=72.35 E-value=62 Score=30.04 Aligned_cols=221 Identities=10% Similarity=0.088 Sum_probs=117.8
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc-----CCeeEEEEcCCcEEEEeC
Q 011268 169 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 243 (489)
Q Consensus 169 vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G-----~~h~~~Lt~~G~vy~wG~ 243 (489)
++.+..+.+++|+.|++|..-...--..+....+.+ ....+...++.+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~--i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQN--ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------CB--GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcC--hhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 455678899999999999986544222222221111 1122333356677777654 356788899999998865
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeecccc
Q 011268 244 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 321 (489)
Q Consensus 244 n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~--G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 321 (489)
.++-.. .........+.+...++.+.. +..+.+++|++|.++.+-..+.-..|... .-++...+.
T Consensus 132 ~~~~~~-------r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~-----~Gv~~i~L~- 198 (312)
T 1suu_A 132 TDFKAV-------KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT-----QGVCGMKLK- 198 (312)
T ss_dssp GGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB-----CCEECCCCC-
T ss_pred HHhhcc-------CCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC-----CCeEeEEeC-
Confidence 443110 011222223433456666554 56789999999998887655443333211 111222222
Q ss_pred CCccEEEEEe--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEE--EeeCCeEEEEEcCCcE
Q 011268 322 KGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSV 397 (489)
Q Consensus 322 ~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~ht~~lt~~G~v 397 (489)
.+..|+.+.. ...+.++++++|.+...-...+-..+.+..-... .. +....+..++.+ .......++++++|.+
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~-~~-~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~ 276 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTS-YK-KSDKKAGSVVDAIAVSEDDEILLVSKRSKA 276 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC-SC-TTCTTTCSEEEEEEECTTCEEEEEETTCEE
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCEEe-eE-ccCCCCCeEEEEEEeCCCCEEEEEeCCCeE
Confidence 2334555543 3456788899998887776665444443221110 11 000112234332 2355667788888877
Q ss_pred EEEEcCCCC
Q 011268 398 YGFGWMGFG 406 (489)
Q Consensus 398 y~wG~n~~g 406 (489)
.-.-.++..
T Consensus 277 ~r~~~~~i~ 285 (312)
T 1suu_A 277 LRTVAGKVS 285 (312)
T ss_dssp EEEEGGGSC
T ss_pred EEEEcccCC
Confidence 766544433
No 67
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=72.08 E-value=65 Score=30.13 Aligned_cols=224 Identities=15% Similarity=0.148 Sum_probs=116.6
Q ss_pred EEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCc--eeecCCCCCCCEEEEEeCC-----CEEEEEEcCCcEEE
Q 011268 221 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP--KSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYS 293 (489)
Q Consensus 221 ~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p--~~i~~~~~~~~i~~i~~G~-----~~~~~lt~~G~vy~ 293 (489)
.++.+..+.+++|+.|++|..-..+.-..+.. ..-.| ..+ .+.+.++|+.+..-. .+.+++|++|.+.-
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~---a~G~~i~~~i-~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKr 120 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK---DLGQHIANII-PIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKK 120 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGTS-CCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCC---CCCcChhhcc-CCCCCCEEEEEEEecccCCCceEEEEeCCCeEEE
Confidence 35667788899999999999865433222211 11111 112 233446787765433 36888999998776
Q ss_pred ecCCCCcccCCCCCCCCcCceEeeccccCCccEEE--EEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCccccee-e
Q 011268 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP-L 370 (489)
Q Consensus 294 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~-v 370 (489)
.-..++-... .......-.+... ..++. +..+..+.+++|++|+++.+-.++.-.+|.... ... +
T Consensus 121 t~l~e~~~~~------r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~-----GV~~i 188 (323)
T 1wp5_A 121 TELKHYKAQR------YSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAA-----GVKGM 188 (323)
T ss_dssp EEGGGGCCSC------CSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCC-----CEECC
T ss_pred eEHHHhhhcc------ccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCc-----CEEEE
Confidence 5433321100 0111111112211 23333 234677889999999999998765444443111 122 2
Q ss_pred ccCCCCcEEEEEee--CC-eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEE--EecCCeEEE
Q 011268 371 SSLKSHLAVQVCAR--KR-KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQI--STGLYHTVV 445 (489)
Q Consensus 371 ~~~~~~~i~~v~~G--~~-ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i--~~G~~ht~~ 445 (489)
....+..|+.+..= .. ..+.++++|..--.-...+-..+.+... +..+...+. .+..++.+ ..+..+.++
T Consensus 189 ~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG----v~~~~~~~~-~~~~l~~~~~v~~~~~i~~ 263 (323)
T 1wp5_A 189 NLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG----VVILRELKA-NPHRISGFVVAQDSDTIYL 263 (323)
T ss_dssp CCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC----EECSCCCSS-SCCCEEEEEEECTTCEEEE
T ss_pred EeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC----EECeeecCC-CCceEEEEEEeCCCCeEEE
Confidence 22234456666431 22 5667777776444433333222222111 112221211 12244432 345678899
Q ss_pred EEcCCCEEEEeCCCCCCCCC
Q 011268 446 VTDRGRLFGFGDNERAQLGH 465 (489)
Q Consensus 446 l~~~G~v~~wG~n~~GqLG~ 465 (489)
++++|++...-.++--..|-
T Consensus 264 it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 264 QTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp EETTSCEEEEEGGGSCBCCS
T ss_pred EeCCCeEEEEEhhhcCccCc
Confidence 99999998887776655554
No 68
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=71.52 E-value=61 Score=29.63 Aligned_cols=209 Identities=8% Similarity=-0.025 Sum_probs=106.0
Q ss_pred CCCEEEEEeC------CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecc-CCCCCeEEEEccCC------ee
Q 011268 163 AAHVVQVSAS------ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGLN------FT 229 (489)
Q Consensus 163 ~~~i~~vs~G------~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~-~~~~~i~~V~~G~~------h~ 229 (489)
...|..|+.. ....++-..+|.|..|-...... ......... .....|..++.... ..
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------IRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------EEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------EEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence 3467777765 45577777788899996543211 111111111 12234555554333 45
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCEEEEEEcCCcEEEecCCCCcccCCCC
Q 011268 230 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGE 306 (489)
Q Consensus 230 ~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~ 306 (489)
+.-..+|.|..|-.... .....+... ...|..++.. ....+.-..+|.|+.|-.....
T Consensus 89 ~~~~~dg~i~v~d~~~~-----------~~~~~~~~~--~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------ 149 (366)
T 3k26_A 89 AVAGSRGIIRIINPITM-----------QCIKHYVGH--GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------ 149 (366)
T ss_dssp EEEETTCEEEEECTTTC-----------CEEEEEESC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE------
T ss_pred EEecCCCEEEEEEchhc-----------eEeeeecCC--CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe------
Confidence 55578899999943211 111122211 2568877764 3556666789999999643211
Q ss_pred CCCCcCceEeeccccCCccEEEEEecC--CeEEEEcCCCcEEEEecCCCCCCC-------CCCC--C------Ccccce-
Q 011268 307 QHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALG-------HGDE--I------DKTLPE- 368 (489)
Q Consensus 307 ~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlg-------~~~~--~------~~~~p~- 368 (489)
....+..+......|..++... ...+....+|.|+.|-......+. .... . ....|.
T Consensus 150 -----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 150 -----LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp -----EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred -----EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 1111111122334566666543 344556678999999754311100 0000 0 000000
Q ss_pred eeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCC
Q 011268 369 PLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMG 404 (489)
Q Consensus 369 ~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~ 404 (489)
.........|..++......+.-..+|.|..|-...
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 001112334555555566666677899999998543
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=71.48 E-value=1.3e+02 Score=33.47 Aligned_cols=189 Identities=10% Similarity=-0.051 Sum_probs=87.4
Q ss_pred CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-CEEEEEEcCCcEEEecCCCCcccCC
Q 011268 226 LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGH 304 (489)
Q Consensus 226 ~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~-~~~~~lt~~G~vy~wG~n~~gqlG~ 304 (489)
..+.+.-+.||.|..|-.... + .+........|..++... ...++...+|.|+.|-....-
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~-~-------------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---- 1076 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTG-D-------------YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---- 1076 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTT-E-------------EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC----
T ss_pred CCEEEEEcCCCEEEEEECCCC-c-------------eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc----
Confidence 344455567889999954321 1 111111124566665543 445666778999999643211
Q ss_pred CCCCCCcCceEeeccccCCccEEEEEe--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEE
Q 011268 305 GEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVC 382 (489)
Q Consensus 305 ~~~~~~~~p~~i~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~ 382 (489)
....+.. ....|..++. .....+.-..+|.|+.|-......+ ..+. .....|..++
T Consensus 1077 -------~~~~~~~---~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-----------~~l~-~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1077 -------IERDFTC---HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-----------HELK-GHNGCVRCSA 1134 (1249)
T ss_dssp -------CCEEEEC---CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-----------BCCC-CCSSCEEEEE
T ss_pred -------eeEEEcc---cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-----------eeec-cCCCcEEEEE
Confidence 0111111 1112333332 2234445567788888864321111 0111 1122455555
Q ss_pred eeCC--eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCC
Q 011268 383 ARKR--KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNER 460 (489)
Q Consensus 383 ~G~~--ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~ 460 (489)
.... ..+.-..||.|+.|-......+..-. . .............|..++.......+++.+|.|..|-....
T Consensus 1135 ~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~-----~-~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1135 FSLDGILLATGDDNGEIRIWNVSDGQLLHSCA-----P-ISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATG 1208 (1249)
T ss_dssp ECSSSSEEEEEETTSCCCEEESSSSCCCCCCC-----C-CC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSSC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCceEEEec-----c-ccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCCC
Confidence 5332 33344578888888754322221100 0 00000001112346666665555555555688999976543
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=71.34 E-value=69 Score=30.11 Aligned_cols=161 Identities=9% Similarity=0.010 Sum_probs=73.8
Q ss_pred CeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCEEEEEEcCCcEE
Q 011268 218 PCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVY 292 (489)
Q Consensus 218 ~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy 292 (489)
.|..++.. ....+.-..+|.|..|-...... .......+... ...|..++.. ....+.-..+|.|+
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------AINSMARFSNH--SSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------CCCEEEECCCS--SSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccc-------cccchhhccCC--ccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 45555543 23334446789999994332100 00011111111 1456666654 44555566789999
Q ss_pred EecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC---CeEEEEcCCCcEEEEecCCCCCCCCCCCCCccccee
Q 011268 293 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP 369 (489)
Q Consensus 293 ~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 369 (489)
.|-....... .....+..+.........|..++... ...+.-..+|.|..|-..... ....
T Consensus 140 iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----------~~~~ 203 (416)
T 2pm9_A 140 IWDMNKCTES-----PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----------EVIH 203 (416)
T ss_dssp BCBTTTTSSC-----TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----------EEEE
T ss_pred EEECCCCccc-----cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----------cceE
Confidence 9965432200 00001111111111222455555433 233444678999999753311 0111
Q ss_pred eccCC-----CCcEEEEEeeC---CeEEEEEcCC---cEEEEEcC
Q 011268 370 LSSLK-----SHLAVQVCARK---RKTFVLVDTG---SVYGFGWM 403 (489)
Q Consensus 370 v~~~~-----~~~i~~v~~G~---~ht~~lt~~G---~vy~wG~n 403 (489)
+.... ...|..++... ...+.-..+| .|+.|-..
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 11111 34566666543 2344445566 88888744
No 71
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=71.06 E-value=61 Score=29.43 Aligned_cols=204 Identities=7% Similarity=-0.098 Sum_probs=103.7
Q ss_pred CEEEEEeC--CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CC-eeEEEEcCCcEE
Q 011268 165 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LN-FTGFLTIRGHVH 239 (489)
Q Consensus 165 ~i~~vs~G--~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~-h~~~Lt~~G~vy 239 (489)
.|..++.. ....+.-..+|.|+.|-..... ....+..... ....|..++.. .. +.++-+.+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~---------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA---------KNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT---------TEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC---------ccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 56666544 3344555678999998654311 0111111111 12345555443 34 556667889999
Q ss_pred EEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 240 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 240 ~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
.|-....++ ...+........|..++.. ....+....+|.|+.|-...... ........+ +..
T Consensus 83 ~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~--~~~ 146 (342)
T 1yfq_A 83 KVDLIGSPS-----------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLN--SNN 146 (342)
T ss_dssp EECSSSSSS-----------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESC--SSS
T ss_pred EEEeccCCc-----------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCe--eeE
Confidence 994311111 1222220012466666654 56667778899999995432100 000000000 111
Q ss_pred cccCCccEEEEEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee---CCeEEEEEcCC
Q 011268 319 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR---KRKTFVLVDTG 395 (489)
Q Consensus 319 ~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~ht~~lt~~G 395 (489)
+. ....|..++......++.+.+|.|+.|-....+.. ............+..++.. ....++-..+|
T Consensus 147 ~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 11 22357777777777666788999999976431110 1111222223346666554 34555566789
Q ss_pred cEEEEEcCC
Q 011268 396 SVYGFGWMG 404 (489)
Q Consensus 396 ~vy~wG~n~ 404 (489)
.+..|-...
T Consensus 217 ~i~i~~~~~ 225 (342)
T 1yfq_A 217 RVAVEFFDD 225 (342)
T ss_dssp EEEEEECCT
T ss_pred cEEEEEEcC
Confidence 999887544
No 72
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=69.95 E-value=79 Score=30.23 Aligned_cols=235 Identities=15% Similarity=0.128 Sum_probs=118.2
Q ss_pred eeCCCCCCEEE--EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc-----CCeeE
Q 011268 158 INFPSAAHVVQ--VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTG 230 (489)
Q Consensus 158 ~~~~~~~~i~~--vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G-----~~h~~ 230 (489)
+.+.....+.. ++.+..+.+++|+.|++|..-...--..|....+.+ ....++.-++.+|+.+..- ..+.+
T Consensus 40 ~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~--i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll 117 (370)
T 3l6v_A 40 ASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRP--IINWIPLESGERVQAVLPVREYADNRYVF 117 (370)
T ss_dssp EECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGSCCCCTTCCEEEEEEESCCCTTCEEE
T ss_pred cccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcC--HhhccCCCCCCEEEEEEEeccCCCCcEEE
Confidence 33444444433 445566788899999999887554333332222211 1112223356778887653 34678
Q ss_pred EEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCEEEEEEcCCcEEEecCCCCcccCCCCCC
Q 011268 231 FLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH 308 (489)
Q Consensus 231 ~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i--~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~ 308 (489)
++|++|.+.-.-...+-... ........+.+...++.+ ..+..+.+++|++|.+..+-...-..+|....-
T Consensus 118 ~~T~~G~vKrt~l~e~~~~~-------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~G 190 (370)
T 3l6v_A 118 MATRNGTVKKTPLSEFAFRL-------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATG 190 (370)
T ss_dssp EEETTSEEEEEEGGGGCSCC-------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred EEeCCCeEEEeEHHHhhccc-------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCC
Confidence 88999988776543332110 111222223333455443 346678999999999987754433333322111
Q ss_pred CCcCceEeeccccCCccEEEEEe-------------------------------------cCCeEEEEcCCCcEEEEecC
Q 011268 309 DELQPRAIQTFRRKGIHVVRVSA-------------------------------------GDEHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 309 ~~~~p~~i~~~~~~~~~i~~i~~-------------------------------------g~~h~~~lt~~G~vy~wG~n 351 (489)
++...+. .+.+|+.+.. ...+.+.+|++|..-..-..
T Consensus 191 -----V~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 191 -----VRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp -----EECCCCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGG
T ss_pred -----eeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHH
Confidence 0000010 0112222211 23456778888866655554
Q ss_pred CCCCCCCCCCCCcccceeeccCCCCcEEEE--EeeCCeEEEEEcCCcEEEEEcCCCCCCCC
Q 011268 352 YCGALGHGDEIDKTLPEPLSSLKSHLAVQV--CARKRKTFVLVDTGSVYGFGWMGFGSLGF 410 (489)
Q Consensus 352 ~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v--~~G~~ht~~lt~~G~vy~wG~n~~gqLG~ 410 (489)
.+-..+.+..--... .+.. .+..++.+ .......+++|+.|++.-.-.......|.
T Consensus 265 e~~~~~Rg~kGv~~~--k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR 322 (370)
T 3l6v_A 265 EYPRKGRGTQGVIGI--QTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGR 322 (370)
T ss_dssp GSCCBCTTSCCEESS--CCCT-TTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCS
T ss_pred HhcccccCCcceEEE--EecC-CCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCC
Confidence 444443332211110 0100 11234333 23456788999999998887655555443
No 73
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=69.49 E-value=62 Score=31.19 Aligned_cols=64 Identities=8% Similarity=0.052 Sum_probs=42.9
Q ss_pred eEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecC
Q 011268 219 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 296 (489)
Q Consensus 219 i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~ 296 (489)
|.+|+. ....+++.++|.|..|=-....+ ...+.... ..+.++.+-....++++.+|.|+.|--
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEECS--SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCccceee--cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 889999 77777788899999985432221 11122221 346677666666788899999999954
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=67.72 E-value=1.3 Score=45.68 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=29.1
Q ss_pred cccCChHHHHHHHhcCCC-Ccccccccccccccccc
Q 011268 10 IEELPSHLIFEILTSGRL-SAVDLAHLELTSKTFGG 44 (489)
Q Consensus 10 ~~~lp~~i~~~~l~~~~L-~~~d~~~L~~t~~~f~~ 44 (489)
..+||+||+.+||. +| +++|+.+.+.+||.+..
T Consensus 13 ~~~LPdeil~~I~~--~L~~~~d~~~~s~vck~W~~ 46 (592)
T 3ogk_B 13 CVATVDDVIEQVMT--YITDPKDRDSASLVCRRWFK 46 (592)
T ss_dssp CCCCGGGTHHHHHT--TCCCHHHHHHHTTSCHHHHH
T ss_pred cCCCCHHHHHHHHH--hcCCHHHHHHHHHHhHHHHH
Confidence 35899999999999 99 89999999999985543
No 75
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=67.32 E-value=72 Score=28.77 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.5
Q ss_pred ceeEEeeCCcEEEEeCCC
Q 011268 122 YHTLLISNSSVFSCGSSL 139 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n~ 139 (489)
.|++++.++++|++|-..
T Consensus 55 ~~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred cccEEEECCEEEEEcCCC
Confidence 466666789999999643
No 76
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=67.31 E-value=68 Score=28.52 Aligned_cols=228 Identities=9% Similarity=0.042 Sum_probs=117.7
Q ss_pred CEEEEEe-CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEE--ccCCeeEEEEcCCcEEEE
Q 011268 165 HVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--AGLNFTGFLTIRGHVHTC 241 (489)
Q Consensus 165 ~i~~vs~-G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~--~G~~h~~~Lt~~G~vy~w 241 (489)
.|..++. .....+.-..||.|..|-.... .....+... ...|..++ ....+.++-..+|.|..|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSS------------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCC------------EEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 5666654 2334556677899999964331 011111111 22344443 334455556778888877
Q ss_pred eCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeecccc
Q 011268 242 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 321 (489)
Q Consensus 242 G~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 321 (489)
-..... .......+... ...|..++......+.-..+|.|+.|-. ...+..+..
T Consensus 87 ~~~~~~--------~~~~~~~~~~~--~~~i~~~~~~~~~l~~~~~d~~i~~~d~----------------~~~~~~~~~ 140 (313)
T 3odt_A 87 PLFATS--------GEDPLYTLIGH--QGNVCSLSFQDGVVISGSWDKTAKVWKE----------------GSLVYNLQA 140 (313)
T ss_dssp ETTCCT--------TSCC-CEECCC--SSCEEEEEEETTEEEEEETTSEEEEEET----------------TEEEEEEEC
T ss_pred EeeecC--------CCCcccchhhc--ccCEEEEEecCCEEEEEeCCCCEEEEcC----------------CcEEEeccc
Confidence 432211 00011111111 2578888887778888888999999941 011111221
Q ss_pred CCccEEEEEe---cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee-CCeEEEEEcCCcE
Q 011268 322 KGIHVVRVSA---GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVLVDTGSV 397 (489)
Q Consensus 322 ~~~~i~~i~~---g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~ht~~lt~~G~v 397 (489)
....+..+.. .....+.-..+|.|+.|-... ....+.......+..++.. +...++-..+|.|
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i 207 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLI 207 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEE
T ss_pred CCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeE
Confidence 2234544443 455666678889999995210 1111222233345555543 3335556788999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCC-eEEEEEcCCCEEEEeCCC
Q 011268 398 YGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY-HTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 398 y~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~-ht~~l~~~G~v~~wG~n~ 459 (489)
+.|-...... ...+. .....|..++.... ..++...||.|+.|-...
T Consensus 208 ~i~d~~~~~~--------------~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 208 KLVDMHTGDV--------------LRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEEETTTCCE--------------EEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred EEEECCchhh--------------hhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence 9997432110 11111 11235666665433 455566788888886544
No 77
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=65.13 E-value=87 Score=28.94 Aligned_cols=219 Identities=16% Similarity=0.145 Sum_probs=113.4
Q ss_pred EEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCc--eeecCCCCCCCEEEEEe-----CCCEEEEEEcCCcEEEe
Q 011268 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP--KSIAPLEEVGSVVQIAA-----GPSYMLAVTGNGVVYSF 294 (489)
Q Consensus 222 V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p--~~i~~~~~~~~i~~i~~-----G~~~~~~lt~~G~vy~w 294 (489)
++.+..+.+++|+.|++|..-..+.-..+. ...-.| ..+ .+.+.++|+.+.. ...+.+++|++|.+.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l-~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt 124 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLL-PLEQDERITAILPVTEFEEGVKVFMATANGTVKKT 124 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTS-CCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhcc-CCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEE
Confidence 456778889999999999986543322221 112222 112 2344467887765 23467888999987765
Q ss_pred cCCCCcccCCCCCCCCcCceEeeccccCCccEEEE--EecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeecc
Q 011268 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS 372 (489)
Q Consensus 295 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i--~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~ 372 (489)
-..++-.. . ......-.+.. +..++.+ ..+..+.+++|++|+++.+-..+.-.+|....- ...+..
T Consensus 125 ~l~e~~~~------~-r~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G----v~~i~L 192 (307)
T 1zi0_A 125 VLTEFNRL------R-TAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG----VRGIRL 192 (307)
T ss_dssp EGGGGTTC------C-TTCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC----EECCCC
T ss_pred EHHHhhcc------c-cCCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC----eEeEEe
Confidence 33222110 0 01111111111 1234333 235678889999999999876654444432211 122232
Q ss_pred CCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEe--cCCeEEEEEc
Q 011268 373 LKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQIST--GLYHTVVVTD 448 (489)
Q Consensus 373 ~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~--G~~ht~~l~~ 448 (489)
..+..|+.+..- ....+++|++|.+--.-...+-.-+.+... ...+. +. -.+..++.+.. .....+++++
T Consensus 193 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG----~~~~~-~~-~~~~~lv~~~~v~~~~~l~~~t~ 266 (307)
T 1zi0_A 193 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG----VISIK-VT-ERNGLVVGAVQVDDCDQIMMITD 266 (307)
T ss_dssp CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC----EESSC-CC-TTTCSEEEEEEECTTCEEEEEES
T ss_pred CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC----EEeeE-ec-CCCCeEEEEEEeCCCceEEEEcC
Confidence 345567776542 234567777776544432222211111110 11111 11 01234554433 5567889999
Q ss_pred CCCEEEEeCCCCCC
Q 011268 449 RGRLFGFGDNERAQ 462 (489)
Q Consensus 449 ~G~v~~wG~n~~Gq 462 (489)
+|++..+-.++--.
T Consensus 267 ~g~~ir~~~~~i~~ 280 (307)
T 1zi0_A 267 AGTLVRTRVSEISI 280 (307)
T ss_dssp SCCEEEEEGGGSCB
T ss_pred CCcEEEEecccccc
Confidence 99998876665433
No 78
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=63.86 E-value=50 Score=30.16 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.7
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|++++.+++||++|-.
T Consensus 63 ~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 63 GLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEECCC
Confidence 45555588999999854
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=63.67 E-value=99 Score=29.08 Aligned_cols=194 Identities=11% Similarity=-0.015 Sum_probs=96.0
Q ss_pred CCEEEEEeC--CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEE
Q 011268 164 AHVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVH 239 (489)
Q Consensus 164 ~~i~~vs~G--~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy 239 (489)
..|..++.. ....+.-..||.|+.|-..... ....+.. ....|..++.. ....+.-..||.|.
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------NPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------CCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------CceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 467777764 3355556778999999654311 1111221 12235555443 33445556788899
Q ss_pred EEeCCCCCccCCCCCCCCCCceeecCC-CCCCCEEEEEe-----------------------CCCEEEEEEcCCcEEEec
Q 011268 240 TCGSNTHGQLGHGDTLDRPTPKSIAPL-EEVGSVVQIAA-----------------------GPSYMLAVTGNGVVYSFG 295 (489)
Q Consensus 240 ~wG~n~~GqlG~~~~~~~~~p~~i~~~-~~~~~i~~i~~-----------------------G~~~~~~lt~~G~vy~wG 295 (489)
.|-......+ ..+... .....|..++. ...+.++-..+|.|..|-
T Consensus 207 iwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 207 LWECGTGTTI-----------HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp EEETTTTEEE-----------EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred EeECCCCcee-----------EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 8854321111 000000 00022322222 123445556788888885
Q ss_pred CCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC---eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeecc
Q 011268 296 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS 372 (489)
Q Consensus 296 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~ 372 (489)
..... .+..+. ......|..++.... ..+.-..+|.|+.|-.....+ ....+..
T Consensus 276 ~~~~~-----------~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~ 332 (420)
T 3vl1_A 276 VFSKE-----------QTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLI 332 (420)
T ss_dssp TTTCC-----------EEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEE
T ss_pred CCCCc-----------eeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhc
Confidence 42211 111111 112235666666444 455567889999997543111 0122222
Q ss_pred CCCCcEEEEEeeCCeEEEE-EcCCcEEEEEcCC
Q 011268 373 LKSHLAVQVCARKRKTFVL-VDTGSVYGFGWMG 404 (489)
Q Consensus 373 ~~~~~i~~v~~G~~ht~~l-t~~G~vy~wG~n~ 404 (489)
.....|..+...+...++. ..||.|..|-...
T Consensus 333 ~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 333 NEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp STTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred cCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 2344566666665554443 3578899997543
No 80
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=62.49 E-value=84 Score=27.84 Aligned_cols=15 Identities=7% Similarity=-0.066 Sum_probs=9.1
Q ss_pred EEEEEcCCcEEEEEc
Q 011268 388 TFVLVDTGSVYGFGW 402 (489)
Q Consensus 388 t~~lt~~G~vy~wG~ 402 (489)
.++++.+|++|.-..
T Consensus 211 ~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 211 GVGINSNGEILIADN 225 (286)
T ss_dssp EEEECTTCCEEEEEC
T ss_pred EEEECCCCCEEEEeC
Confidence 456666677766553
No 81
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=61.98 E-value=1e+02 Score=28.68 Aligned_cols=235 Identities=13% Similarity=0.009 Sum_probs=109.1
Q ss_pred CEEEEEe-CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccC--CeeEEEEcCCcEEEE
Q 011268 165 HVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTC 241 (489)
Q Consensus 165 ~i~~vs~-G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~--~h~~~Lt~~G~vy~w 241 (489)
.|..++- .....++-..+|.|..|-..... ..........--...|..|+... .+.+.-..+|.|..|
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~---------~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKE---------SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccc---------eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4666553 23445555677888888432210 00000000000122455555433 344445678889988
Q ss_pred eCCCCCccCCCCCCCCCCceeecCCC-CCCCEEEEEeCC---CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEee
Q 011268 242 GSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 317 (489)
Q Consensus 242 G~n~~GqlG~~~~~~~~~p~~i~~~~-~~~~i~~i~~G~---~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~ 317 (489)
-... ...+..+. ....|..++... ...+....+|.|..|-..... +....
T Consensus 167 d~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~------------~~~~~ 220 (357)
T 4g56_B 167 DLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK------------PATRI 220 (357)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS------------CBCBC
T ss_pred ECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc------------eeeee
Confidence 4321 11121111 114677777632 345556778999999542211 11111
Q ss_pred ccccCCccEEEEEecC--CeEEE-EcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee---CCeEEEE
Q 011268 318 TFRRKGIHVVRVSAGD--EHVVA-LDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR---KRKTFVL 391 (489)
Q Consensus 318 ~~~~~~~~i~~i~~g~--~h~~~-lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G---~~ht~~l 391 (489)
.+......+..++... .+.++ -..+|.|+.|-.... + ....+. .....|..++.. ....+.-
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~~-~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTSA-VHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEEC-CCSSCEEEEEECSSSSCCEEEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------EeEEEe-ccceeEEEEEEcCCCCCEEEEE
Confidence 1111222455555432 23333 367888999864321 0 111121 123356677653 2333345
Q ss_pred EcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEec---CCeEEEEEcCCCEEEEeCCCCCC
Q 011268 392 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG---LYHTVVVTDRGRLFGFGDNERAQ 462 (489)
Q Consensus 392 t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G---~~ht~~l~~~G~v~~wG~n~~Gq 462 (489)
.+||.|+.|-... ++ .. ..+ . ....|..|+.. ....+.-..||+|..|=....++
T Consensus 289 s~D~~i~iwd~~~-~~-----------~~--~~~-~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 289 SEDCTVAVLDADF-SE-----------VF--RDL-S-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp ETTSCEEEECTTS-CE-----------EE--EEC-C-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eCCCEEEEEECCC-Cc-----------Ee--EEC-C-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 6789999995321 10 10 111 1 12357777764 22333346799999997655443
No 82
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=61.93 E-value=91 Score=28.09 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.7
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|+++..+++||++|-.
T Consensus 54 ~~~~~~~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVYMAGLVFAVGGF 70 (302)
T ss_dssp SCEEEEETTEEEEESCB
T ss_pred cceEEEECCEEEEEeCc
Confidence 45655588999999953
No 83
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=61.57 E-value=1.1e+02 Score=28.72 Aligned_cols=244 Identities=9% Similarity=-0.005 Sum_probs=112.6
Q ss_pred CCEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc---CCeeEEEEcCCcE
Q 011268 164 AHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHV 238 (489)
Q Consensus 164 ~~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G---~~h~~~Lt~~G~v 238 (489)
..|..++... ...+.-..+|.|..|-..... .. ......+.. ....|..++.. ....+.-..+|.|
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~------~~--~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN------NA--INSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT------SC--CCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccc------cc--ccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 3566666543 334444578999999654310 00 001111111 12234555443 4445555678999
Q ss_pred EEEeCCCCCccCCCCCCCCCCceeecCC-CCCCCEEEEEeCC---CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCce
Q 011268 239 HTCGSNTHGQLGHGDTLDRPTPKSIAPL-EEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 314 (489)
Q Consensus 239 y~wG~n~~GqlG~~~~~~~~~p~~i~~~-~~~~~i~~i~~G~---~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 314 (489)
+.|-....... .....+..+... .....|..++... ...+.-..+|.|..|-.... .
T Consensus 139 ~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------------~ 199 (416)
T 2pm9_A 139 FIWDMNKCTES-----PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK--------------K 199 (416)
T ss_dssp EBCBTTTTSSC-----TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT--------------E
T ss_pred EEEECCCCccc-----cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC--------------C
Confidence 99854322100 000011111111 1114566666543 33444457888998854321 1
Q ss_pred EeeccccC------CccEEEEEecCC---eEEEEcCCC---cEEEEecCCCCCCCCCCCCCcccceeecc-CCCCcEEEE
Q 011268 315 AIQTFRRK------GIHVVRVSAGDE---HVVALDSSG---YVYTWGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQV 381 (489)
Q Consensus 315 ~i~~~~~~------~~~i~~i~~g~~---h~~~lt~~G---~vy~wG~n~~gqlg~~~~~~~~~p~~v~~-~~~~~i~~v 381 (489)
.+..+... ...|..++.... ..+.-..+| .|+.|-.....+ |..... .....|..+
T Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----------~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 200 EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----------PLQTLNQGHQKGILSL 268 (416)
T ss_dssp EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----------CSBCCCSCCSSCEEEE
T ss_pred cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----------CcEEeecCccCceeEE
Confidence 11111111 234666655433 333445566 788886543111 111111 122346666
Q ss_pred Ee---eCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecC---CeEEEEEcCCCEEEE
Q 011268 382 CA---RKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGL---YHTVVVTDRGRLFGF 455 (489)
Q Consensus 382 ~~---G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~---~ht~~l~~~G~v~~w 455 (489)
+. .....+.-..||.|+.|-...... ...+.. ....|..++... ...+.-..||.|..|
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--------------~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQ--------------LSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCE--------------EEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEE
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCcc--------------ceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEE
Confidence 65 345556667789999996322110 011111 112344444443 334444568889999
Q ss_pred eCCCCC
Q 011268 456 GDNERA 461 (489)
Q Consensus 456 G~n~~G 461 (489)
-.....
T Consensus 334 ~~~~~~ 339 (416)
T 2pm9_A 334 TLQNLT 339 (416)
T ss_dssp ESCCCC
T ss_pred EccCCC
Confidence 776543
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=61.12 E-value=1.6e+02 Score=30.77 Aligned_cols=198 Identities=12% Similarity=0.008 Sum_probs=98.7
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc----CCeeEEEEcCCcE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHV 238 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~Lt~~G~v 238 (489)
.|..++... ...+.-..||.|..|-.... .......+.. ....|..|+.. ....+.-..||.|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC----------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 354554432 23444457899998853310 0011111111 12346667653 3455666789999
Q ss_pred EEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC----CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCce
Q 011268 239 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 314 (489)
Q Consensus 239 y~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~----~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 314 (489)
+.|-.... + ......+.. ....|..++... ...+.-+.+|.|..|-...... ....
T Consensus 80 ~vwd~~~~-~--------~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~~ 139 (753)
T 3jro_A 80 LIWKEENG-R--------WSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSPI 139 (753)
T ss_dssp EEEEEETT-E--------EEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCCE
T ss_pred EEEECCCC-c--------ccccccccC--CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------ccee
Confidence 99953211 0 001111111 125677777663 4666777889999996533211 1111
Q ss_pred EeeccccCCccEEEEEecC---------------CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEE
Q 011268 315 AIQTFRRKGIHVVRVSAGD---------------EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAV 379 (489)
Q Consensus 315 ~i~~~~~~~~~i~~i~~g~---------------~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~ 379 (489)
.+.. ....|..++... ...+.-..+|.|+.|-..... ....+..........|.
T Consensus 140 ~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 140 IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVR 208 (753)
T ss_dssp EEEC---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEE
T ss_pred Eeec---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEE
Confidence 1111 122455555433 344556778999999653211 00011111112234577
Q ss_pred EEEeeCC-----eEEEEEcCCcEEEEEcCC
Q 011268 380 QVCARKR-----KTFVLVDTGSVYGFGWMG 404 (489)
Q Consensus 380 ~v~~G~~-----ht~~lt~~G~vy~wG~n~ 404 (489)
.++.... ..+.-..+|.|+.|-...
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 7776543 344456789999997543
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=61.05 E-value=1.4e+02 Score=29.80 Aligned_cols=230 Identities=7% Similarity=-0.068 Sum_probs=114.2
Q ss_pred CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCC
Q 011268 172 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 251 (489)
Q Consensus 172 G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~ 251 (489)
.....+.-+.+|.|+.|-... + .+..........|..++. .. .+.-..+|.|..|-..
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~-~------------~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~------- 365 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGH-D------------EVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS------- 365 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTE-E------------EEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT-------
T ss_pred CCCeEEEEECCCCEEEEECCC-C------------cEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch-------
Confidence 556677778889999996433 1 111111112345788888 66 6666789999999332
Q ss_pred CCCCCCCCceeecCCCCCCCEEEEEeC-CCEEEEEEcCCcEEEecCCCCcccC------C---------CCCC-----CC
Q 011268 252 GDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVYSFGSGSNFCLG------H---------GEQH-----DE 310 (489)
Q Consensus 252 ~~~~~~~~p~~i~~~~~~~~i~~i~~G-~~~~~~lt~~G~vy~wG~n~~gqlG------~---------~~~~-----~~ 310 (489)
+ +. ......|..++.. ....+....+|.|..|-........ . +... ..
T Consensus 366 --------~--~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 434 (615)
T 1pgu_A 366 --------S--MH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 434 (615)
T ss_dssp --------E--EE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred --------h--hc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence 1 11 1112456655553 3344455566777766432110000 0 0000 00
Q ss_pred cCceEeeccccCCccEEEEEecCCeEEEEcC-CCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCe
Q 011268 311 LQPRAIQTFRRKGIHVVRVSAGDEHVVALDS-SGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRK 387 (489)
Q Consensus 311 ~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~-~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~h 387 (489)
.....+..+. ....+..++......++-.. +|.|+.|-.... ++ .+..+ ......|..++.. ..+
T Consensus 435 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~---------~~~~~-~~~~~~v~~~~~s~~g~~ 502 (615)
T 1pgu_A 435 FTGDIIKSVR-LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EV---------SFDLK-TPLRAKPSYISISPSETY 502 (615)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECSSEEEEEETTTSCEEEEETTEE-EE---------EEECS-SCCSSCEEEEEECTTSSE
T ss_pred cCCceeeecc-cCCCceEEEEcCCEEEEeecCCCeEEEEECCCc-cc---------ccccc-CCccCceEEEEECCCCCE
Confidence 0001111111 12245555555445555566 888998876421 00 00111 1122346666653 344
Q ss_pred EEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEec------------CCeEEEEEcCCCEEEE
Q 011268 388 TFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG------------LYHTVVVTDRGRLFGF 455 (489)
Q Consensus 388 t~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G------------~~ht~~l~~~G~v~~w 455 (489)
.+.-..+|.|+.|-...... ...+.......|..++.. ....+.-..||.|+.|
T Consensus 503 l~~~~~dg~i~iw~~~~~~~--------------~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw 568 (615)
T 1pgu_A 503 IAAGDVMGKILLYDLQSREV--------------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY 568 (615)
T ss_dssp EEEEETTSCEEEEETTTTEE--------------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEE
T ss_pred EEEcCCCCeEEEeeCCCCcc--------------eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEE
Confidence 55556789999997432111 111111123456766663 3444455678999999
Q ss_pred eCCCC
Q 011268 456 GDNER 460 (489)
Q Consensus 456 G~n~~ 460 (489)
-....
T Consensus 569 ~~~~~ 573 (615)
T 1pgu_A 569 SVKRP 573 (615)
T ss_dssp ESSCT
T ss_pred ECCCC
Confidence 87664
No 86
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=59.36 E-value=95 Score=27.46 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.1
Q ss_pred eEEEEcCCCcEEEEec
Q 011268 335 HVVALDSSGYVYTWGK 350 (489)
Q Consensus 335 h~~~lt~~G~vy~wG~ 350 (489)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 3466667777776554
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=58.43 E-value=1.1e+02 Score=27.80 Aligned_cols=197 Identities=11% Similarity=-0.012 Sum_probs=99.0
Q ss_pred CCCEEEEEeCC-----ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEE--------ccCCee
Q 011268 163 AAHVVQVSASE-----NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT--------AGLNFT 229 (489)
Q Consensus 163 ~~~i~~vs~G~-----~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~--------~G~~h~ 229 (489)
...|..++... ...+.-..+|.|..|-.....+ ....+.. ....|..+. ....+.
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l 132 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-----------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEI 132 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-----------CSEEECC-CSSCEEEEEEESGGGCC-CCCEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-----------cEEEEEe-cccceEEEeeccccccCCCccEE
Confidence 34677777654 3445556789999996544210 0111111 122355552 223355
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCC--CCCEEEEE------eCCCEEEEEEcCCcEEEecCCCCcc
Q 011268 230 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE--VGSVVQIA------AGPSYMLAVTGNGVVYSFGSGSNFC 301 (489)
Q Consensus 230 ~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~--~~~i~~i~------~G~~~~~~lt~~G~vy~wG~n~~gq 301 (489)
+.-..+|.|..|-..... .....+..... ...+..++ ....+.+.-..+|.|+.|-.....
T Consensus 133 ~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~- 201 (357)
T 3i2n_A 133 VTGSRDGTVKVWDPRQKD----------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA- 201 (357)
T ss_dssp EEEETTSCEEEECTTSCS----------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-
T ss_pred EEEeCCCeEEEEeCCCCC----------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-
Confidence 556788999999432211 01112211111 13566666 344556666778999999643211
Q ss_pred cCCCCCCCCcCceEeeccccCCccEEEEEecC-----CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCC
Q 011268 302 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-----EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSH 376 (489)
Q Consensus 302 lG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~-----~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~ 376 (489)
+..... ....|..++... ...++-..+|.|+.|-......+ ...+.........
T Consensus 202 -----------~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 202 -----------LRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-------KGFASVSEKAHKS 260 (357)
T ss_dssp -----------EEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-------TEEEEEEEECCSS
T ss_pred -----------eeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-------cceeeeccCCCcC
Confidence 111111 122566666543 44555678899999865321100 0011001012234
Q ss_pred cEEEEEeeCCe---EEEEEcCCcEEEEEcC
Q 011268 377 LAVQVCARKRK---TFVLVDTGSVYGFGWM 403 (489)
Q Consensus 377 ~i~~v~~G~~h---t~~lt~~G~vy~wG~n 403 (489)
.|..++..... .+.-..+|.|+.|-..
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 57777765543 3445678999999754
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=56.73 E-value=1.3e+02 Score=28.23 Aligned_cols=154 Identities=11% Similarity=0.047 Sum_probs=78.9
Q ss_pred EEccCCeeEEE---EcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCEEEEEEcCCcEEEec
Q 011268 222 VTAGLNFTGFL---TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFG 295 (489)
Q Consensus 222 V~~G~~h~~~L---t~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG 295 (489)
+++...+..++ ..+|.|+.|-....|++.. ..+ .+..- ...|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~-~~~~h--~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK------NVP-LVCGH--TAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT------TCC-CBCCC--SSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC------CCc-eEecC--CCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44444554444 4579999997655544310 000 11111 1467777764 34555667789999996
Q ss_pred CCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC---eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeec-
Q 011268 296 SGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS- 371 (489)
Q Consensus 296 ~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~---h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~- 371 (489)
....+... ....+. ..+......|..++.... ..+.-..+|.|+.|-..... ....+.
T Consensus 111 ~~~~~~~~-----~~~~~~--~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~ 172 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPV--ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGP 172 (402)
T ss_dssp CCTTCCSS-----CBCSCS--EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECT
T ss_pred ccCCCCcc-----ccCCce--EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEec
Confidence 54432110 011111 112222335767666544 33445678999999753210 011110
Q ss_pred cCCCCcEEEEEee--CCeEEEEEcCCcEEEEEc
Q 011268 372 SLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGW 402 (489)
Q Consensus 372 ~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~ 402 (489)
......|..++.. ....+.-..||.|+.|-.
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 1123346666653 334445567888998874
No 89
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=55.68 E-value=1.2e+02 Score=27.52 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=33.3
Q ss_pred cCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecC
Q 011268 225 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGS 296 (489)
Q Consensus 225 G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~ 296 (489)
...+.++-+.+|.|+.|-....++ ....+... ...|..++.. ....+....+|.|+.|-.
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYE----------YVDSIDLH--EKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTE----------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCCCcE----------eEEEEecC--CCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 344555567889999985432111 11111111 1467777664 344555667888988854
No 90
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=55.60 E-value=1.1e+02 Score=29.41 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=43.1
Q ss_pred EEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcEEEEecC
Q 011268 272 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 272 i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~vy~wG~n 351 (489)
|.+++. ....+++..+|.|..|--....+ ......+ ...+.++.+-....++++++|.|+.|-..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~-----------~~~~~~~---~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE-----------FRTVTSF---EKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC-----------EEEEEEC---SSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc-----------cCcccee---ecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 999999 76777777889888885433221 1112222 12455666666567778999999999653
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=54.74 E-value=1.3e+02 Score=27.52 Aligned_cols=241 Identities=11% Similarity=0.007 Sum_probs=118.4
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc----CCeeEEEEcCCcE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHV 238 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~Lt~~G~v 238 (489)
.|..++... ...+.-..||.|..|-.... .......+.. ....|..++.. ....+.-..||.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT----------EEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC----------cceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 466665543 23333456888988854310 0011111111 12346666653 4555666788999
Q ss_pred EEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC----CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCce
Q 011268 239 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 314 (489)
Q Consensus 239 y~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~----~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~ 314 (489)
..|-..... ..+..... .....|..++... ...+....+|.|..|-..... ...+.
T Consensus 82 ~iwd~~~~~----------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~~~ 141 (379)
T 3jrp_A 82 LIWKEENGR----------WSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG---------TTSPI 141 (379)
T ss_dssp EEEEEETTE----------EEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS---------CCCEE
T ss_pred EEEEcCCCc----------eeEeeeec-CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC---------ceeeE
Confidence 999432110 00111111 1124677777664 356667788999998653321 11111
Q ss_pred EeeccccCCccEEEEEecC---------------CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEE
Q 011268 315 AIQTFRRKGIHVVRVSAGD---------------EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAV 379 (489)
Q Consensus 315 ~i~~~~~~~~~i~~i~~g~---------------~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~ 379 (489)
.+. .....|..++... ...++-..+|.|+.|-..... ....+.....-....|.
T Consensus 142 ~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v~ 210 (379)
T 3jrp_A 142 IID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVR 210 (379)
T ss_dssp EEE---CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEE
T ss_pred Eec---CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcEe
Confidence 111 1222455555433 445556788999999653210 00011111111233566
Q ss_pred EEEeeCC-----eEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcC-cCCCCCEEEEEecC--CeEEEEEcCCC
Q 011268 380 QVCARKR-----KTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILD-SLRAHHVSQISTGL--YHTVVVTDRGR 451 (489)
Q Consensus 380 ~v~~G~~-----ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~-~~~~~~v~~i~~G~--~ht~~l~~~G~ 451 (489)
.++.... ..+....+|.|..|-...... ......+. ......|..++... ...++-..||.
T Consensus 211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 7766543 344456789999997443110 00011111 11223566666543 34444568899
Q ss_pred EEEEeCC
Q 011268 452 LFGFGDN 458 (489)
Q Consensus 452 v~~wG~n 458 (489)
|+.|=.+
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9998655
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=53.36 E-value=1.3e+02 Score=27.13 Aligned_cols=246 Identities=9% Similarity=-0.040 Sum_probs=119.3
Q ss_pred CeEEEEecCc-eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC--Cc-eeEEEEcCCcEE
Q 011268 113 NQMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--EN-HAAFVLQSGQVF 186 (489)
Q Consensus 113 ~~~~i~~G~~-h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G--~~-~~~~lt~~G~v~ 186 (489)
.|..++.-.. ..++. .||.|+.|-..... . ...+..+ ......|..++.. .. ..+.-..+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------K-NVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------T-EEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------c-cccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3555554322 22333 78889998643211 0 0011111 1223356665543 44 566667889999
Q ss_pred EEeC-CCCCcccCCCCCCceeccEEecc-CCCCCeEEEEcc-CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceee
Q 011268 187 TCGD-NSSFCCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 263 (489)
Q Consensus 187 ~wG~-n~~gqlg~~~~~~~~~~p~~v~~-~~~~~i~~V~~G-~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i 263 (489)
.|-. .. +++ ..+.. .....|..++.. ....+.-..+|.|+.|-...... .. .......+
T Consensus 83 ~wd~~~~-~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~--~~~~~~~~ 144 (342)
T 1yfq_A 83 KVDLIGS-PSF------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV--IAVKNLNS 144 (342)
T ss_dssp EECSSSS-SSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC--EEEEESCS
T ss_pred EEEeccC-Cce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc--ccccCCee
Confidence 9965 32 211 22221 012345555443 55666667889999994321000 00 00000011
Q ss_pred cCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC---CeEEEEc
Q 011268 264 APLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALD 340 (489)
Q Consensus 264 ~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~~~lt 340 (489)
..+.....|..++......++.+.+|.|+.|-....+. ........ .....|..++... ...++-.
T Consensus 145 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEES--GLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEEC--SCSSCEEEEEECSGGGCEEEEEE
T ss_pred eEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeec--CCCCceeEEEECCCCCCEEEEEe
Confidence 11112257888888888877778899999996543110 00111111 1122456665543 4455567
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCcccceeeccCC--------CCcEEEEEee--CCeEEEEEcCCcEEEEEc
Q 011268 341 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--------SHLAVQVCAR--KRKTFVLVDTGSVYGFGW 402 (489)
Q Consensus 341 ~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~--------~~~i~~v~~G--~~ht~~lt~~G~vy~wG~ 402 (489)
.+|.+..|-....+. .........+.... ...|..++.. ....+.-..+|.|+.|-.
T Consensus 214 ~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp TTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred cCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 889998887644310 00000011111110 1246666553 333455567889999863
No 93
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=52.54 E-value=1.5e+02 Score=27.54 Aligned_cols=231 Identities=10% Similarity=-0.006 Sum_probs=110.6
Q ss_pred CEEEEEe-CCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEEE
Q 011268 165 HVVQVSA-SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTC 241 (489)
Q Consensus 165 ~i~~vs~-G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~w 241 (489)
.|..++. .....+.-..||.|..|-..... ..........--...|..|+.. ..+.+.-..||.|..|
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~---------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENE---------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTS---------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCC---------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4666664 34455566778999999644311 1111111110112235555543 3344445678888888
Q ss_pred eCCCCCccCCCCCCCCCCceeecCCCC-CCCEEEEEeCCC---EEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEee
Q 011268 242 GSNTHGQLGHGDTLDRPTPKSIAPLEE-VGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 317 (489)
Q Consensus 242 G~n~~GqlG~~~~~~~~~p~~i~~~~~-~~~i~~i~~G~~---~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~ 317 (489)
-... ...+..+.. ...|..++.... ..+.-..||.|..|-.... .+....
T Consensus 155 d~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~ 208 (344)
T 4gqb_B 155 DLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP------------KPASQI 208 (344)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS------------SCEEEC
T ss_pred ECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc------------ceeeee
Confidence 4321 112222211 146777776432 3344567899999953221 111110
Q ss_pred ccccCCccEEEEEecC--CeEEE-EcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeC---CeEEEE
Q 011268 318 TFRRKGIHVVRVSAGD--EHVVA-LDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK---RKTFVL 391 (489)
Q Consensus 318 ~~~~~~~~i~~i~~g~--~h~~~-lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~---~ht~~l 391 (489)
........+..++... .+.++ -..+|.|..|-...... ...+. -....|..|+... ...+.-
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-----------~~~~~-~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-----------VLSSA-VHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-----------CEEEE-CCSSCEEEEEECSSSSCCEEEE
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-----------EEEEc-CCCCCEEEEEEccCCCeEEEEE
Confidence 0111122355554432 23333 46788899985432110 11111 1233577777642 333445
Q ss_pred EcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEecCC-eEEE--EEcCCCEEEEeCC
Q 011268 392 VDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY-HTVV--VTDRGRLFGFGDN 458 (489)
Q Consensus 392 t~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~-ht~~--l~~~G~v~~wG~n 458 (489)
..||.|+.|-... ++ ...+.. ....|..++.... ..++ -..||+|..|=..
T Consensus 277 s~D~~i~vwd~~~-~~--------------~~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 277 SEDCSLAVLDSSL-SE--------------LFRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ETTSCEEEECTTC-CE--------------EEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred eCCCeEEEEECCC-Cc--------------EEEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 6899999995321 11 111111 1235777776422 2233 3479999999543
No 94
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=52.31 E-value=1.5e+02 Score=27.45 Aligned_cols=263 Identities=12% Similarity=0.111 Sum_probs=134.4
Q ss_pred ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEE--EEccCCeeEEEEcCCcEEEEeCCCCCccCC
Q 011268 174 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGH 251 (489)
Q Consensus 174 ~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~--V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~ 251 (489)
...+++|.+|.+--.-...+.....+... ..-+..-++..+.. ++.+..+.+++|+.|++|.+-....-..|.
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g-----~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKG-----LSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCC-----EECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCC-----ceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 44678899998876643333211111000 01111112333444 455677889999999999986543211111
Q ss_pred CCCCCCCCceeecCCCCCCCEEEEEeC-----CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccE
Q 011268 252 GDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 326 (489)
Q Consensus 252 ~~~~~~~~p~~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i 326 (489)
.... .+....+. +.+.++|+.+... ..+.+++|++|.++..-..++-.. ...-.....+.. +..+
T Consensus 84 ~~~G-~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-------r~~G~~~i~L~~-~d~l 153 (312)
T 1suu_A 84 ASKG-QNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-------KSRGVIVIKLND-KDFV 153 (312)
T ss_dssp -----CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCT-TCCE
T ss_pred cCCC-cChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-------CCCcEEEEecCC-CCEE
Confidence 1000 01111222 3344678877664 456899999999998754433110 011111112222 2345
Q ss_pred EEEEe--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEe--eCCeEEEEEcCCcEEEEEc
Q 011268 327 VRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA--RKRKTFVLVDTGSVYGFGW 402 (489)
Q Consensus 327 ~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~ht~~lt~~G~vy~wG~ 402 (489)
+.+.. +..+.+++|++|.+..+-.++.-.+|....- -+.+....+..|+.+.. ...+.++++++|.+...-.
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G----v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG----VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC----EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC----eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence 44433 5667888999999999877654444332111 11122223445666543 3456788899998877776
Q ss_pred CCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEE--EecCCeEEEEEcCCCEEEEeCCCC
Q 011268 403 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQI--STGLYHTVVVTDRGRLFGFGDNER 460 (489)
Q Consensus 403 n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i--~~G~~ht~~l~~~G~v~~wG~n~~ 460 (489)
..+-..+.+.... .... +.......++.+ .......++++++|.+...-.++.
T Consensus 230 ~e~~~~~R~~kGv----~~~~-~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i 284 (312)
T 1suu_A 230 SKISELKRGATGY----TSYK-KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKV 284 (312)
T ss_dssp GGSCBCCTTCCCE----ECSC-TTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGS
T ss_pred HHhcccCCCCCCE----EeeE-ccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccC
Confidence 6655444433211 1111 110112234432 235567778888888776655554
No 95
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=51.84 E-value=1.3e+02 Score=26.85 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=69.6
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCC
Q 011268 169 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTH 246 (489)
Q Consensus 169 vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~ 246 (489)
.+....+.+++|+.|++|..-...--.. ...+.+ ....++..++.+|+.+... ..+.+++|++|.+.-.-..++
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~~--r~~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEP--LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCCS--SSCCEE--GGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCCc--CCCCeE--eeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 3455678999999999999865542110 011111 1112333356778887663 345777899998877654333
Q ss_pred CccCCCCCCCCCCceeecCCCCCCCEEEEE---eCCCEEEEEEcCCcEEEecCCCCcccC
Q 011268 247 GQLGHGDTLDRPTPKSIAPLEEVGSVVQIA---AGPSYMLAVTGNGVVYSFGSGSNFCLG 303 (489)
Q Consensus 247 GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~---~G~~~~~~lt~~G~vy~wG~n~~gqlG 303 (489)
-.. ...-..+..+.+...++.+. .+..+.+++|++|.+.-+-.++.-.+|
T Consensus 116 ~~~-------~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 116 VAR-------NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CCC-------STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred ccc-------CcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 110 11112222222223444332 357789999999998887665544443
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=51.28 E-value=1.3e+02 Score=26.73 Aligned_cols=119 Identities=8% Similarity=-0.121 Sum_probs=60.1
Q ss_pred CeEEEEecCce-eEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC----CceeEEEEcCCcE
Q 011268 113 NQMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQV 185 (489)
Q Consensus 113 ~~~~i~~G~~h-~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G----~~~~~~lt~~G~v 185 (489)
.|..++.-... .++. .||.|..|-..... ........+. .....|..++.. ....+.-..||.|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT--------SNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSS--------CCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC--------Ccceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 35555543322 2333 68899999644211 0000111111 223468887764 3455666788999
Q ss_pred EEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc----CCeeEEEEcCCcEEEEeCC
Q 011268 186 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRGHVHTCGSN 244 (489)
Q Consensus 186 ~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G----~~h~~~Lt~~G~vy~wG~n 244 (489)
..|-.......... ........+. .....|..++.. ..+.+.-+.+|.|+.|-..
T Consensus 84 ~vwd~~~~~~~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 84 KLWEEDPDQEECSG---RRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEEECTTSCTTSS---CSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEecCCCcccccc---cCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 99976542110000 0001111111 123456777665 3456666789999999543
No 97
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=51.23 E-value=1.5e+02 Score=27.37 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=76.0
Q ss_pred CCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEE---cCCCcEE
Q 011268 270 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL---DSSGYVY 346 (489)
Q Consensus 270 ~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~l---t~~G~vy 346 (489)
..|..++......++. .++.|+.|-.....+ .+..+.. ...+..++. ..+++ ..+|.|.
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~-------------~~~~~~~-~~~~~~~s~---~~la~~sg~~~g~v~ 162 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPWK-------------RITDDIR-FGGVCEFSN---GLLVYSNEFNLGQIH 162 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTCC-------------BSSCCEE-EEEEEEEET---TEEEEEESSCTTCEE
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCce-------------eeEEecc-CCceEEEEc---cEEEEeCCCcCcEEE
Confidence 5788888877665544 578899986543201 0110100 112333333 23333 5789999
Q ss_pred EEecCCCCCCCCCCC---CCcccc-eeeccCCCCcEEEEEeeCCe--EEEEEcCCc-EEEEEcCCCCCCCCCCCCCCCce
Q 011268 347 TWGKGYCGALGHGDE---IDKTLP-EPLSSLKSHLAVQVCARKRK--TFVLVDTGS-VYGFGWMGFGSLGFPDRGVSDKV 419 (489)
Q Consensus 347 ~wG~n~~gqlg~~~~---~~~~~p-~~v~~~~~~~i~~v~~G~~h--t~~lt~~G~-vy~wG~n~~gqLG~~~~~~~~~~ 419 (489)
.|-.....+...... .....| .....-....|..++....- .+.-..||. |..|-.....
T Consensus 163 iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~------------- 229 (355)
T 3vu4_A 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV------------- 229 (355)
T ss_dssp EEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-------------
T ss_pred EEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-------------
Confidence 998654322111100 011122 12112223457777665433 333457887 8888743211
Q ss_pred eccEEcC-cCCCCCEEEEEecC--CeEEEEEcCCCEEEEeCCC
Q 011268 420 LRPRILD-SLRAHHVSQISTGL--YHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 420 ~~P~~v~-~~~~~~v~~i~~G~--~ht~~l~~~G~v~~wG~n~ 459 (489)
....+. ......|..++... .+.+.-..||.|..|-...
T Consensus 230 -~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 230 -LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp -EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred -EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 111121 11234577776653 3444556789999997654
No 98
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=50.71 E-value=1.5e+02 Score=27.09 Aligned_cols=21 Identities=0% Similarity=-0.047 Sum_probs=14.4
Q ss_pred CCceeEEEEcCCcEEEEeCCC
Q 011268 172 SENHAAFVLQSGQVFTCGDNS 192 (489)
Q Consensus 172 G~~~~~~lt~~G~v~~wG~n~ 192 (489)
|.-..++++.+|++|+.+...
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCC
Confidence 444556777888888877654
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=50.48 E-value=1.7e+02 Score=27.68 Aligned_cols=160 Identities=8% Similarity=0.064 Sum_probs=74.5
Q ss_pred CCCeEEEEecC-ceeEEe--eCCcEEEEeCC--CCCCcCCCCCCCeeeeeeEeeCC---CCCCEEEEEe----CCceeEE
Q 011268 111 AGNQMQITTGR-YHTLLI--SNSSVFSCGSS--LCGVLGHGPETTQCVSFTRINFP---SAAHVVQVSA----SENHAAF 178 (489)
Q Consensus 111 ~~~~~~i~~G~-~h~~~l--~~g~vy~wG~n--~~gqLG~g~~~~~~~~p~~~~~~---~~~~i~~vs~----G~~~~~~ 178 (489)
.+.|..++.-. ...++. .||.|..|-.. ..|++-. .........+.+. ....+..+.. .....+.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 34466666543 233333 78888888542 1121100 0000011112221 2335555552 2456666
Q ss_pred EEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccC-CCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCccCCCCCC
Q 011268 179 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 255 (489)
Q Consensus 179 lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~-~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~ 255 (489)
-+.+|.|+.|-.... .. ...+... ....|..++.. ..+.+.-+.+|.|..|-... +
T Consensus 188 ~~~d~~i~iwd~~~~---------~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~-------- 246 (437)
T 3gre_A 188 LTNLSRVIIFDIRTL---------ER---LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-N-------- 246 (437)
T ss_dssp EETTSEEEEEETTTC---------CE---EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-T--------
T ss_pred EeCCCeEEEEeCCCC---------ee---eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-c--------
Confidence 678899999965431 10 1111110 12346666553 34445557889999995332 1
Q ss_pred CCCCceeecCCCCCCCEEEEEeCC----C--EEEEEEcCCcEEEecCC
Q 011268 256 DRPTPKSIAPLEEVGSVVQIAAGP----S--YMLAVTGNGVVYSFGSG 297 (489)
Q Consensus 256 ~~~~p~~i~~~~~~~~i~~i~~G~----~--~~~~lt~~G~vy~wG~n 297 (489)
.+.....+.....|..++... + ..+.-..+|.|..|-..
T Consensus 247 ---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 247 ---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp ---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 111111111123566664332 1 33334467788888654
No 100
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=49.63 E-value=1.6e+02 Score=27.11 Aligned_cols=223 Identities=14% Similarity=0.130 Sum_probs=117.0
Q ss_pred EEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc-----cCCeeEEEEcCCcEEEEeC
Q 011268 169 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFLTIRGHVHTCGS 243 (489)
Q Consensus 169 vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~-----G~~h~~~Lt~~G~vy~wG~ 243 (489)
++....+.+++|+.|++|..-...-...+....+.+ ....+...++.+|+.+.. ...+.+++|++|.+.-.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~--i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP--IVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEE--GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeE--hhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 556778899999999999987655333332222211 112223335667777754 2335777899998876643
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEE--eCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeecccc
Q 011268 244 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 321 (489)
Q Consensus 244 n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~--~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~ 321 (489)
.++-.. .........+.+...++.+. .+..+.+++|++|.++.+-..+.-..|.... -.+...+.
T Consensus 127 ~e~~~~-------~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-----Gv~~i~L~- 193 (307)
T 1zi0_A 127 TEFNRL-------RTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-----GVRGIRLG- 193 (307)
T ss_dssp GGGTTC-------CTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-----CEECCCCC-
T ss_pred HHhhcc-------ccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-----CeEeEEeC-
Confidence 322111 01122222233334555543 3567899999999999886554433333111 11211222
Q ss_pred CCccEEEEEec--CCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEe--eCCeEEEEEcCCcE
Q 011268 322 KGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCA--RKRKTFVLVDTGSV 397 (489)
Q Consensus 322 ~~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~--G~~ht~~lt~~G~v 397 (489)
.+..|+.+..- ....+++|++|.+-..-...+-.-+.+... ...+. +. -.+..++.+.. .+...+++|++|.+
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~-~~-~~~~~lv~~~~v~~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISIK-VT-ERNGLVVGAVQVDDCDQIMMITDAGTL 270 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-EESSC-CC-TTTCSEEEEEEECTTCEEEEEESSCCE
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-EEeeE-ec-CCCCeEEEEEEeCCCceEEEEcCCCcE
Confidence 23456666542 234667788886655544333211221110 00111 11 11134554433 55667899999999
Q ss_pred EEEEcCCCCCCC
Q 011268 398 YGFGWMGFGSLG 409 (489)
Q Consensus 398 y~wG~n~~gqLG 409 (489)
.-+-.+.....|
T Consensus 271 ir~~~~~i~~~~ 282 (307)
T 1zi0_A 271 VRTRVSEISIVG 282 (307)
T ss_dssp EEEEGGGSCBCC
T ss_pred EEEecccccccC
Confidence 887655543333
No 101
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=49.55 E-value=1.7e+02 Score=27.50 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=14.0
Q ss_pred CEEEEEeCCceeE--EEEcCCcEEEEeCC
Q 011268 165 HVVQVSASENHAA--FVLQSGQVFTCGDN 191 (489)
Q Consensus 165 ~i~~vs~G~~~~~--~lt~~G~v~~wG~n 191 (489)
.|..++......+ .-..+|.|+.|-..
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence 4555555322222 22346788888543
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=48.64 E-value=1.7e+02 Score=27.30 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=78.3
Q ss_pred EEeCCceeEEE---EcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc---cCCeeEEEEcCCcEEEEe
Q 011268 169 VSASENHAAFV---LQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHTCG 242 (489)
Q Consensus 169 vs~G~~~~~~l---t~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~---G~~h~~~Lt~~G~vy~wG 242 (489)
+++......++ ..+|.|+.|-....+.+... .+ .+.. ....|..++. .....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~-------~~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN-------VP-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT-------CC-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC-------Cc-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44555554444 45799999976654432110 00 0111 1234666655 334455557789999996
Q ss_pred CCCCCccCCCCCCCCCCc-eeecCCCCCCCEEEEEeCCC---EEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 243 SNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 243 ~n~~GqlG~~~~~~~~~p-~~i~~~~~~~~i~~i~~G~~---~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
....+... ....+ ..+... ...|..++.... ..+.-..+|.|+.|-.... ..+..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~ 169 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGH--TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLT 169 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECC--SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred ccCCCCcc-----ccCCceEEecCC--CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEE
Confidence 54322110 00111 122221 146777776543 4555567899999964321 11112
Q ss_pred c--ccCCccEEEEEec--CCeEEEEcCCCcEEEEecC
Q 011268 319 F--RRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 319 ~--~~~~~~i~~i~~g--~~h~~~lt~~G~vy~wG~n 351 (489)
+ ......|..++.. ....+.-..+|.|+.|-..
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 2 1122356666553 3344445678899999753
No 103
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=48.38 E-value=1.8e+02 Score=27.31 Aligned_cols=203 Identities=12% Similarity=0.005 Sum_probs=87.4
Q ss_pred EEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcCCcEEEE
Q 011268 166 VVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTC 241 (489)
Q Consensus 166 i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~G~vy~w 241 (489)
|..++... ...+.-..||.|..|-.... + ....+.. ....|..++. ...+.+.-..||.|..|
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-~-----------~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-K-----------IVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT-E-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC-c-----------EEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 55665543 34444466788888854331 0 0011111 1223555543 23344555678899999
Q ss_pred eCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 242 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 242 G~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
-... ++ ....+. ....+..++.. ....+.-..+|.|..|-......+.. . ......
T Consensus 193 d~~~-~~----------~~~~~~---~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~------~-~~~~~~ 251 (393)
T 1erj_A 193 DLRT-GQ----------CSLTLS---IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER------L-DSENES 251 (393)
T ss_dssp ETTT-TE----------EEEEEE---CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE------E-C-----
T ss_pred ECCC-Ce----------eEEEEE---cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe------e-cccccC
Confidence 4321 11 011111 11356666553 24455566788888885432110000 0 000000
Q ss_pred cccCCccEEEEEecCC--eEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeC--CeEEEEEcC
Q 011268 319 FRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK--RKTFVLVDT 394 (489)
Q Consensus 319 ~~~~~~~i~~i~~g~~--h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~--~ht~~lt~~ 394 (489)
.......|..++.... +.+.-..+|.|..|-.......................-....|..++... .+.+.-..|
T Consensus 252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC
Confidence 0111224666655433 344456788999997543221110000000000000001122355665543 334445678
Q ss_pred CcEEEEEc
Q 011268 395 GSVYGFGW 402 (489)
Q Consensus 395 G~vy~wG~ 402 (489)
|.|+.|-.
T Consensus 332 ~~v~iwd~ 339 (393)
T 1erj_A 332 RGVLFWDK 339 (393)
T ss_dssp SEEEEEET
T ss_pred CeEEEEEC
Confidence 89999963
No 104
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=48.04 E-value=1.7e+02 Score=27.08 Aligned_cols=239 Identities=9% Similarity=-0.006 Sum_probs=111.4
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEc--cCCeeEEEEcCCcEEE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~--G~~h~~~Lt~~G~vy~ 240 (489)
.|..++... ...+.-..+|.|+.|-.+ ++ ....+.. ....|..++. ...+.++...+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~-----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKT--GA-----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--SC-----------EEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CC-----------eeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 577776653 345555678999999511 11 0111111 1234555554 3345556677899999
Q ss_pred EeCCCCCccCCCCCCCCCCceeec---CCCCCCCEEEEEe-CCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEe
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIA---PLEEVGSVVQIAA-GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 316 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~---~~~~~~~i~~i~~-G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i 316 (489)
|-......+..-..... ....+. .......+..++. .....++...+|.|+.|-..... ....+
T Consensus 176 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----------~~~~~ 243 (425)
T 1r5m_A 176 WNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----------PTGKL 243 (425)
T ss_dssp EETTTTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-----------CSEEE
T ss_pred EECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----------eeeee
Confidence 95432211100000000 000000 0000000221211 12445666678888888643311 01111
Q ss_pred eccccCCccEEEEEe--cCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCC-eEEEEEc
Q 011268 317 QTFRRKGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVD 393 (489)
Q Consensus 317 ~~~~~~~~~i~~i~~--g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-ht~~lt~ 393 (489)
. .....|..++. .....+.-..+|.|+.|-.... .....+. .....|..++.... ..++...
T Consensus 244 ~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~ 308 (425)
T 1r5m_A 244 I---GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNCFY-GHSQSIVSASWVGDDKVISCSM 308 (425)
T ss_dssp C---CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEEEC-CCSSCEEEEEEETTTEEEEEET
T ss_pred c---cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceEec-CCCccEEEEEECCCCEEEEEeC
Confidence 1 11224544444 3344555667889999864321 0111111 12334666665433 5556678
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEec--CCeEEEEEcCCCEEEEeCCC
Q 011268 394 TGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG--LYHTVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 394 ~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G--~~ht~~l~~~G~v~~wG~n~ 459 (489)
+|.|+.|-.... .....+. .....|..++.. ....++-..+|.|+.|-...
T Consensus 309 d~~i~i~d~~~~--------------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 309 DGSVRLWSLKQN--------------TLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp TSEEEEEETTTT--------------EEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred CCcEEEEECCCC--------------cEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 899999974321 0011111 123356666654 34455556788999986653
No 105
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=44.16 E-value=1.8e+02 Score=26.07 Aligned_cols=241 Identities=7% Similarity=-0.024 Sum_probs=0.0
Q ss_pred CCCeEEEEecCceeEEe---eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEE
Q 011268 111 AGNQMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT 187 (489)
Q Consensus 111 ~~~~~~i~~G~~h~~~l---~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~ 187 (489)
...|..++.-....+++ .|+.|+.|-...... .......................+.-..||.+..
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-----------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccce-----------eeeecCCCCceeEEEEeecCccceeecCCCeEEE
Q ss_pred EeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEE--cCCcEEEEeCCCCCccCCCCCCCCCCceeecC
Q 011268 188 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLT--IRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 265 (489)
Q Consensus 188 wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt--~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~ 265 (489)
|-... ...................++......++++ .++.|..| +.........+..
T Consensus 155 ~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~-----------d~~~~~~~~~~~~ 213 (340)
T 4aow_A 155 WNTLG----------VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW-----------NLANCKLKTNHIG 213 (340)
T ss_dssp ECTTS----------CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE-----------ETTTTEEEEEECC
T ss_pred EEeCC----------CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEE-----------ECCCCceeeEecC
Q ss_pred CCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCcE
Q 011268 266 LEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYV 345 (489)
Q Consensus 266 ~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~v 345 (489)
....-.-+.++.-....+.-..||.|..| +......+..+.....-..-...-..+.++...+|.|
T Consensus 214 h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw--------------d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i 279 (340)
T 4aow_A 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLW--------------DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI 279 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEE--------------ETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEE--------------EeccCceeeeecCCceEEeeecCCCCceeeccCCCEE
Q ss_pred EEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCC--eEEEEEcCCcEEEE
Q 011268 346 YTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR--KTFVLVDTGSVYGF 400 (489)
Q Consensus 346 y~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~--ht~~lt~~G~vy~w 400 (489)
..|-......+ ..................|..++...+ ..+.-..||.|+.|
T Consensus 280 ~iwd~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 280 KIWDLEGKIIV---DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEETTTTEEE---EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEECCCCeEE---EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
No 106
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=43.93 E-value=1.7e+02 Score=25.84 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=67.4
Q ss_pred eeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCC-CCCEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccC
Q 011268 123 HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGH 198 (489)
Q Consensus 123 h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~-~~~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~ 198 (489)
..+++ .|+.|+.|=... |+ ....+.... ...|..|+... .+.+.-..||.|..|-....-
T Consensus 37 ~~lAvg~D~tV~iWd~~t-g~-----------~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---- 100 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---- 100 (318)
T ss_dssp SEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----
T ss_pred CEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce----
Confidence 35666 789999995331 21 112233322 22577766544 344444678999999654311
Q ss_pred CCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe-
Q 011268 199 RDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA- 277 (489)
Q Consensus 199 ~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~- 277 (489)
.. ..... ....+..++......+.-..++.+..|-...... ....+.... ..+..++.
T Consensus 101 -----~~---~~~~~-h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~~ 159 (318)
T 4ggc_A 101 -----RL---RNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSGHS--QEVCGLRWA 159 (318)
T ss_dssp -----EE---EEEEC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--SCEEEEEEC
T ss_pred -----eE---EEecC-ccceEEEeecCCCEEEEEecCCceEeeecCCCce----------eEEEEcCcc--CceEEEEEc
Confidence 00 11111 1223455555555555556677777664322111 001111111 23444433
Q ss_pred -CCCEEEEEEcCCcEEEecC
Q 011268 278 -GPSYMLAVTGNGVVYSFGS 296 (489)
Q Consensus 278 -G~~~~~~lt~~G~vy~wG~ 296 (489)
...+.+.-..+|.|..|-.
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp TTSSEEEEEETTSCEEEEES
T ss_pred CCCCEEEEEecCcceeEEEC
Confidence 3345566677888988854
No 107
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=43.79 E-value=1.9e+02 Score=26.30 Aligned_cols=207 Identities=11% Similarity=-0.065 Sum_probs=97.5
Q ss_pred CEEEEEeC--CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEE
Q 011268 165 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G--~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~ 240 (489)
.|..++.. ....+.-..+|.|..|-... ++ ..+..........|..++.. ....++-+.+|.|+.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RT----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEET-TE----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCC-Ce----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 56666543 34455556788888885432 10 11111101112345555443 344555567888888
Q ss_pred EeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CEEEEEEcCCcEEEecCCCCcccCCCCC----CCCcCce
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQ----HDELQPR 314 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~----~~~~~p~ 314 (489)
|-...... ......+.. .....|..++... ...+.-..+|.|+.|-......-..... .......
T Consensus 123 ~d~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 123 CYFEQEND--------WWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp EEEETTTT--------EEEEEEECT-TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred EEecCCCc--------ceeeeeeec-ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 84322110 000111111 1124677777643 3555566789999996432110000000 0001112
Q ss_pred EeeccccCCccEEEEEecC--CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee-CCeEEEE
Q 011268 315 AIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVL 391 (489)
Q Consensus 315 ~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~ht~~l 391 (489)
.+..+......|..++... .+.+....+|.|..|-...... ...+. .....|..++.. +...++.
T Consensus 194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 194 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEEEEE
T ss_pred heEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCEEEE
Confidence 2222322333566666543 3455567788888886532110 11111 122245555543 4455666
Q ss_pred EcCCcEEEEEcC
Q 011268 392 VDTGSVYGFGWM 403 (489)
Q Consensus 392 t~~G~vy~wG~n 403 (489)
..+|.|+.|-..
T Consensus 262 ~~d~~i~i~~~~ 273 (372)
T 1k8k_C 262 GHDCFPVLFTYD 273 (372)
T ss_dssp ETTSSCEEEEEE
T ss_pred EeCCeEEEEEcc
Confidence 688888888753
No 108
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=43.63 E-value=2.2e+02 Score=27.04 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=69.1
Q ss_pred EEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCce-eecCCCCCCCEEEEEeC-----CCEEEEEEcCCcEEEe
Q 011268 221 QVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK-SIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSF 294 (489)
Q Consensus 221 ~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~-~i~~~~~~~~i~~i~~G-----~~~~~~lt~~G~vy~w 294 (489)
.++.+..+.+++|+.|++|.+-...--..|.. ..-.|. .+-.+.+.++|+.+..- ..+.+++|++|.+.-.
T Consensus 52 ~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~---a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt 128 (370)
T 3l6v_A 52 WLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN---ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKT 128 (370)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc---cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEe
Confidence 34556667888999999998854332221111 111111 11123444788888764 3478899999987765
Q ss_pred cCCCCcccCCCCCCCCcCceEeeccccCCccEEE--EEecCCeEEEEcCCCcEEEEecCCCCCCCC
Q 011268 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSSGYVYTWGKGYCGALGH 358 (489)
Q Consensus 295 G~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~--i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~ 358 (489)
-...+-... ..-...-.+.. +..++. +..+..+.+++|++|++..+-....-.+|.
T Consensus 129 ~l~e~~~~~-------~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 129 PLSEFAFRL-------ARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp EGGGGCSCC-------TTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EHHHhhccc-------CCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 433332110 01111111211 223333 334667889999999999886654444443
No 109
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=43.46 E-value=2e+02 Score=26.53 Aligned_cols=227 Identities=9% Similarity=-0.041 Sum_probs=108.8
Q ss_pred eEEEEecCceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCC--ceeEEEEcCCcEEEEe
Q 011268 114 QMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFTCG 189 (489)
Q Consensus 114 ~~~i~~G~~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~--~~~~~lt~~G~v~~wG 189 (489)
|..++.-....++. .||.|..|=......+ .........-...|..|+... .+.+.-..||.|..|-
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 56666544444445 8899999964321111 011111111223576666543 3444456788899995
Q ss_pred CCCCCcccCCCCCCceeccEEeccCC--CCCeEEEEccC---CeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeec
Q 011268 190 DNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGL---NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 264 (489)
Q Consensus 190 ~n~~gqlg~~~~~~~~~~p~~v~~~~--~~~i~~V~~G~---~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~ 264 (489)
... + ..+..+. ...|..++... ...+.-..||.|..|-... ++ ....+.
T Consensus 156 ~~~-~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~----------~~~~~~ 209 (344)
T 4gqb_B 156 LAQ-Q--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PK----------PASQIG 209 (344)
T ss_dssp TTT-T--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SS----------CEEECC
T ss_pred CCC-C--------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cc----------eeeeee
Confidence 433 1 1111111 23466665533 2233446789999994321 11 011111
Q ss_pred CCCCCCCEEEEEeC---CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC---CeEEE
Q 011268 265 PLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVA 338 (489)
Q Consensus 265 ~~~~~~~i~~i~~G---~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~---~h~~~ 338 (489)
.......+..++.. ....+.-..+|.|..|-.... ..+..+......|..|+... ...+.
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence 11111345555543 223334467888988843221 11112222233577776543 23334
Q ss_pred EcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeC-CeEEE--EEcCCcEEEEEc
Q 011268 339 LDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARK-RKTFV--LVDTGSVYGFGW 402 (489)
Q Consensus 339 lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~-~ht~~--lt~~G~vy~wG~ 402 (489)
-..||.|+.|-... +++ ..... ....|..|+... ...++ -..||+|..|-.
T Consensus 276 gs~D~~i~vwd~~~-~~~-----------~~~~~-H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 276 LSEDCSLAVLDSSL-SEL-----------FRSQA-HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EETTSCEEEECTTC-CEE-----------EEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EeCCCeEEEEECCC-CcE-----------EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 56899999995421 111 11111 123577777542 22233 347899999963
No 110
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=41.72 E-value=1.4e+02 Score=24.12 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCEEEEEeCC-CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEec-CCeEEEEcCCCcEEE
Q 011268 270 GSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-DEHVVALDSSGYVYT 347 (489)
Q Consensus 270 ~~i~~i~~G~-~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g-~~h~~~lt~~G~vy~ 347 (489)
....++.|-. .+-+-+..||.|-.-... .+...-.++... ...++.|.|- ....+++..+|+||.
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~----------~~~~s~lei~sv---~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPE---GNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEE---ETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCC----------CCCceEEEEEEc---cCCEEEEEEecCCEEEeECCCCCEee
Confidence 6788999976 677788889999765321 111222222222 1257788875 567888999999996
Q ss_pred EecCCCCCCCCCCCCCcccceeecc-CCCCcEEEEEeeCCeEEEEEcCCcEEE
Q 011268 348 WGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQVCARKRKTFVLVDTGSVYG 399 (489)
Q Consensus 348 wG~n~~gqlg~~~~~~~~~p~~v~~-~~~~~i~~v~~G~~ht~~lt~~G~vy~ 399 (489)
--. .......-+.+.. .-...+..+..| ..+|+.++|++|+
T Consensus 97 s~~---------~t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD---------RSDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp ECC---------TTCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred ccc---------CCCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 421 1111112222211 111122222233 4899999999985
No 111
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=41.70 E-value=2.3e+02 Score=26.72 Aligned_cols=138 Identities=13% Similarity=0.087 Sum_probs=71.5
Q ss_pred ceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCC-CCCEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCccc
Q 011268 122 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCG 197 (489)
Q Consensus 122 ~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~-~~~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg 197 (489)
.+.+++ .|+.||.|-... |+ ....+.+.. ...|..|+... .+.+.-+.||.|..|-....-
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--- 180 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--- 180 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred CCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---
Confidence 456777 899999996432 11 112233333 23577777543 344555778999999654311
Q ss_pred CCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe
Q 011268 198 HRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA 277 (489)
Q Consensus 198 ~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~ 277 (489)
....+.. ....+..++......+.-..++.++.|-...... ....+.... ..+..+..
T Consensus 181 ---------~~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~----------~~~~~~~h~--~~~~~~~~ 238 (420)
T 4gga_A 181 ---------RLRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH----------HVATLSGHS--QEVCGLRW 238 (420)
T ss_dssp ---------EEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC----------EEEEEECCS--SCEEEEEE
T ss_pred ---------EEEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeeecccce----------eeEEecccc--cceeeeee
Confidence 0111111 1234566666555555556778888874321110 001111111 23444433
Q ss_pred C--CCEEEEEEcCCcEEEecC
Q 011268 278 G--PSYMLAVTGNGVVYSFGS 296 (489)
Q Consensus 278 G--~~~~~~lt~~G~vy~wG~ 296 (489)
. ..+.+....+|.+..|-.
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEES
T ss_pred cCCCCeeeeeeccccceEEee
Confidence 3 345556667888888854
No 112
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=41.10 E-value=2.4e+02 Score=26.77 Aligned_cols=293 Identities=8% Similarity=-0.086 Sum_probs=0.0
Q ss_pred CCCeEEEEe--cCceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCC-CEEEEE---eCCceeEEEEcC
Q 011268 111 AGNQMQITT--GRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA-HVVQVS---ASENHAAFVLQS 182 (489)
Q Consensus 111 ~~~~~~i~~--G~~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~-~i~~vs---~G~~~~~~lt~~ 182 (489)
..+|..++- -....++. .||.|..|-..... .+..+.+.... .|..|+ ......+.-..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Q ss_pred CcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCcee
Q 011268 183 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 262 (489)
Q Consensus 183 G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~ 262 (489)
|.|..|-... .........-.......-..++......+.-+.+|.|+.| +......
T Consensus 187 ~~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w--------------d~~~~~~ 243 (435)
T 4e54_B 187 GTTRLQDFKG---------NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL--------------NMDGKEL 243 (435)
T ss_dssp SCEEEEETTS---------CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE--------------ESSSCBC
T ss_pred CEEEEeeccC---------CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee--------------ccCccee
Q ss_pred ecCCCCCCCEEEEE---eCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCC--eEE
Q 011268 263 IAPLEEVGSVVQIA---AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVV 337 (489)
Q Consensus 263 i~~~~~~~~i~~i~---~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~--h~~ 337 (489)
.........|..++ .+....+.-..||.|..| +.........+.........|..++...+ +.+
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iw-----------d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIW-----------DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEE-----------ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEE-----------ecccccccceEEEeeeccccccceeECCCCCeeE
Q ss_pred EEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCC
Q 011268 338 ALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSD 417 (489)
Q Consensus 338 ~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~ 417 (489)
.-..||.|..|-.......-.-..........+..+.. ..-..+....+....++.++.|.....+.+-.-+ ..
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd---~~ 386 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA---AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD---GN 386 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC---EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEEC---SS
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEE---EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEE---CC
Q ss_pred ceeccEEcCcCCCCCEEEEEe--cCCeEEEEEcCCCEEEE
Q 011268 418 KVLRPRILDSLRAHHVSQIST--GLYHTVVVTDRGRLFGF 455 (489)
Q Consensus 418 ~~~~P~~v~~~~~~~v~~i~~--G~~ht~~l~~~G~v~~w 455 (489)
....-..+.......|..+.+ -....++-..+++|+.|
T Consensus 387 ~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW 426 (435)
T 4e54_B 387 SGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIW 426 (435)
T ss_dssp SCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEEC
T ss_pred CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEE
No 113
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=41.10 E-value=2.1e+02 Score=26.03 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=11.0
Q ss_pred eEEEEEcCCcEEEEEc
Q 011268 387 KTFVLVDTGSVYGFGW 402 (489)
Q Consensus 387 ht~~lt~~G~vy~wG~ 402 (489)
+.++++.+|++|+...
T Consensus 295 ~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEECTTSEEEEEES
T ss_pred eEEEECCCCCEEEEEC
Confidence 4567777777777653
No 114
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=41.10 E-value=97 Score=24.62 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=51.9
Q ss_pred EEEeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEE-EccCCeeEEEEcCCcEEEEeCCCC
Q 011268 168 QVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV-TAGLNFTGFLTIRGHVHTCGSNTH 246 (489)
Q Consensus 168 ~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V-~~G~~h~~~Lt~~G~vy~wG~n~~ 246 (489)
--.|...+.+-+..||+|-....... .........+.. + ++.| ..-..+.+++..+|+||.--..
T Consensus 10 ~~~~~~g~~L~I~~dG~V~Gt~~~~~--------~~s~l~~~~v~~--G--~V~I~g~~sg~yL~m~~~G~v~Gs~~~-- 75 (132)
T 3q7x_A 10 LRSTETGQFLRINPDGTVDGTRDRSD--------PGIQFQISPEGN--G--EVLLRSTETGQFLRINPDGTVDGTRDR-- 75 (132)
T ss_dssp EEETTTCCEEEECTTSBEEEECCTTC--------GGGCEEEEEEET--T--EEEEEETTTCCEEEECTTSBEEEECC---
T ss_pred eeeccCcEEEEECCCCcEEeecCCCC--------CCcEEEEEeccc--C--EEEEEEEcccEEEEECCCCCEeeccCC--
Confidence 34566667777889999986643210 011112222211 2 3333 2344566888999999974211
Q ss_pred CccCCCCCCCCCCceeecCCCCCCCEEEEE-eCCCEEEEEEcCCcEEEe
Q 011268 247 GQLGHGDTLDRPTPKSIAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSF 294 (489)
Q Consensus 247 GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~-~G~~~~~~lt~~G~vy~w 294 (489)
.+......+.... ...+.+. .-....+++.++|++|.-
T Consensus 76 --------s~ec~flE~~~~~--~g~v~ikg~~sg~YLamnk~G~lygs 114 (132)
T 3q7x_A 76 --------SDPGIQFQISPEG--NGEVLLRSTETGQFLRINPDGTVDGT 114 (132)
T ss_dssp --------CCGGGCEEEEEEE--TTEEEEEETTTCCEEEECTTSBEEEE
T ss_pred --------CCCceeEEEEeec--CcEEEEEeccCCeEEEECCCCcCcCC
Confidence 1111111111111 1233332 223348899999999974
No 115
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=38.04 E-value=2.2e+02 Score=25.38 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=66.4
Q ss_pred EecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCC
Q 011268 330 SAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGS 407 (489)
Q Consensus 330 ~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gq 407 (489)
+....+.+++|+.|++|..-..+. -.+...-......++..++.+|+.+... +.+.+++|++|.+.-.=..++-.
T Consensus 41 ~~t~~~ll~~T~~Gr~~~~~~~el---p~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~ 117 (256)
T 1zvt_A 41 GKSNQPVVFVDSTGRSYAIDPITL---PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 117 (256)
T ss_dssp EETTSCEEEEETTSEEEEECGGGS---CCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHC---CCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcc
Confidence 445667889999999999876432 1111111111123333456678888763 44567788999887665433311
Q ss_pred CCCCCCCCCCceeccEEcCcC-CCCCEEEE-E--ecCCeEEEEEcCCCEEEEeCCCCCCC
Q 011268 408 LGFPDRGVSDKVLRPRILDSL-RAHHVSQI-S--TGLYHTVVVTDRGRLFGFGDNERAQL 463 (489)
Q Consensus 408 LG~~~~~~~~~~~~P~~v~~~-~~~~v~~i-~--~G~~ht~~l~~~G~v~~wG~n~~GqL 463 (489)
...+ -..+-.+ .+..++.+ . .+..+.++++++|++..+-.++--.+
T Consensus 118 ~~r~----------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~ 167 (256)
T 1zvt_A 118 RNRA----------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 167 (256)
T ss_dssp CSTT----------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred cCcC----------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCc
Confidence 1100 0011111 11122222 2 25678999999999998877654333
No 116
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=37.37 E-value=2.7e+02 Score=26.23 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=70.6
Q ss_pred ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCccCC
Q 011268 174 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGH 251 (489)
Q Consensus 174 ~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~ 251 (489)
...+++--|+.||.|-... |+ ......... ....|..|+.. ..+.+.-+.||.|..|-......
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g~---------~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--- 181 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-GD---------ILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--- 181 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-CC---------EEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---
T ss_pred CCEEEEEeCCEEEEEECCC-CC---------EEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE---
Confidence 4467777799999996543 11 100011111 12246666543 33444457889999995432111
Q ss_pred CCCCCCCCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEe
Q 011268 252 GDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA 331 (489)
Q Consensus 252 ~~~~~~~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~ 331 (489)
...+..- ...+..++......+.-..++.++.|-..... ..+..+......+..+..
T Consensus 182 --------~~~~~~h--~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~-------------~~~~~~~~h~~~~~~~~~ 238 (420)
T 4gga_A 182 --------LRNMTSH--SARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-------------HHVATLSGHSQEVCGLRW 238 (420)
T ss_dssp --------EEEECCC--SSCEEEEEEETTEEEEEETTSEEEEEETTSSS-------------CEEEEEECCSSCEEEEEE
T ss_pred --------EEEEeCC--CCceEEEeeCCCEEEEEeCCCceeEeeecccc-------------eeeEEecccccceeeeee
Confidence 1111111 14567777666666666777888777432211 111111111123333333
Q ss_pred --cCCeEEEEcCCCcEEEEecC
Q 011268 332 --GDEHVVALDSSGYVYTWGKG 351 (489)
Q Consensus 332 --g~~h~~~lt~~G~vy~wG~n 351 (489)
.....+....+|.+..|-..
T Consensus 239 ~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 239 APDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEESS
T ss_pred cCCCCeeeeeeccccceEEeec
Confidence 33445556778888888653
No 117
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=36.39 E-value=2.6e+02 Score=25.72 Aligned_cols=191 Identities=8% Similarity=-0.027 Sum_probs=98.3
Q ss_pred CCeEEEEecCc--eeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeC-CCCCCEEEEEeCC---ceeEEEEcCC
Q 011268 112 GNQMQITTGRY--HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSASE---NHAAFVLQSG 183 (489)
Q Consensus 112 ~~~~~i~~G~~--h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~-~~~~~i~~vs~G~---~~~~~lt~~G 183 (489)
+.|..++.-.. ..++. .||.|..|-..... ....+.. .....|..++... ...+.-..||
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 34666665443 23444 78999999654211 1112222 2334677777643 4555567789
Q ss_pred cEEEEeCCCCCcccCCCCCCceeccEEeccCC--CCCeEEEE--ccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCC
Q 011268 184 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 259 (489)
Q Consensus 184 ~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~--~~~i~~V~--~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~ 259 (489)
.|..|-... . .. ..+.... ...|..++ ......+.-+.+|.|+.|-.. ++ .
T Consensus 142 ~i~iwd~~~-~---------~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~----------~ 196 (383)
T 3ei3_B 142 ATTLRDFSG-S---------VI---QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GH----------E 196 (383)
T ss_dssp EEEEEETTS-C---------EE---EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SC----------E
T ss_pred EEEEEECCC-C---------ce---EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CC----------E
Confidence 999996542 1 01 1111111 12244443 334455556788999998531 11 1
Q ss_pred ceeecCCCCCCCEEEEEeCCC---EEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC---
Q 011268 260 PKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--- 333 (489)
Q Consensus 260 p~~i~~~~~~~~i~~i~~G~~---~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--- 333 (489)
...+... ...|..++.... ..+.-..+|.|..|-...... ... .+..+. ....|..++...
T Consensus 197 ~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~--~~~~~~-~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 197 IFKEKLH--KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--------KNS--YIAEMP-HEKPVNAAYFNPTDS 263 (383)
T ss_dssp EEEEECS--SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--------TTC--EEEEEE-CSSCEEEEEECTTTS
T ss_pred EEEeccC--CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--------ccc--eEEEec-CCCceEEEEEcCCCC
Confidence 1111111 146777776544 455556788888885432100 011 111111 233577776544
Q ss_pred CeEEEEcCCCcEEEEecCC
Q 011268 334 EHVVALDSSGYVYTWGKGY 352 (489)
Q Consensus 334 ~h~~~lt~~G~vy~wG~n~ 352 (489)
...+.-..+|.|+.|-...
T Consensus 264 ~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp CEEEEEESSSEEEEEETTB
T ss_pred CEEEEEcCCCcEEEEECCC
Confidence 4445567789999997643
No 118
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=34.93 E-value=74 Score=29.05 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.7
Q ss_pred CCeeEEEEcCCcEEEEeC
Q 011268 226 LNFTGFLTIRGHVHTCGS 243 (489)
Q Consensus 226 ~~h~~~Lt~~G~vy~wG~ 243 (489)
..|+++. .+++||.+|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566666 5899999985
No 119
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=34.29 E-value=1.3e+02 Score=27.20 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.1
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|+++..++++|++|-.
T Consensus 141 ~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEEeCC
Confidence 56666688999999964
No 120
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=33.05 E-value=4.1e+02 Score=27.69 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=69.5
Q ss_pred EeCCceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEEEeCCCCC
Q 011268 170 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHG 247 (489)
Q Consensus 170 s~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~G 247 (489)
+....+.+++|+.|++|..-...-.. + ...-......+..-++.+|+.+.+. ..+.++.|++|.+.-.-...+-
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~-~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~ 586 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---A-RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 586 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---C-C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---c-cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhc
Confidence 34456788999999999886544221 1 1111111222333356778888664 3456777899988766432221
Q ss_pred ccCCCCCCCCCCceeecCCCCCCCEEEE---EeCCCEEEEEEcCCcEEEecCCCCcccC
Q 011268 248 QLGHGDTLDRPTPKSIAPLEEVGSVVQI---AAGPSYMLAVTGNGVVYSFGSGSNFCLG 303 (489)
Q Consensus 248 qlG~~~~~~~~~p~~i~~~~~~~~i~~i---~~G~~~~~~lt~~G~vy~wG~n~~gqlG 303 (489)
...........+.+...++.+ ..+..+.+++|++|.+..+-...--.+|
T Consensus 587 -------~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 587 -------ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp -------CCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred -------ccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 111222233333333444433 2367899999999999988776544443
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.86 E-value=2.8e+02 Score=25.12 Aligned_cols=233 Identities=8% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCC
Q 011268 173 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG 252 (489)
Q Consensus 173 ~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~ 252 (489)
....+.-..||.|+.| .....+.+..+....|..+..-.. .+.-..|+.|..|-....-.+-..
T Consensus 48 ~~~l~sg~~Dg~v~iw---------------d~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFT---------------QLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp EEEEEEEEETTEEEEE---------------EESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEET
T ss_pred CCEEEEECCCCcEEEE---------------ECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeec
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeCC----CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEE
Q 011268 253 DTLDRPTPKSIAPLEEVGSVVQIAAGP----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR 328 (489)
Q Consensus 253 ~~~~~~~p~~i~~~~~~~~i~~i~~G~----~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~ 328 (489)
.............. .+|..++... .+.+.-..+|.|..| +...................-..
T Consensus 112 ~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~w-----------d~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 112 KTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGFQ-----------SYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp TTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEEE-----------ESSSSCEEEEECCCSSCCCCEEE
T ss_pred CCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEEE-----------ECCCCcEEEEEecCCCCceEEEE
Q ss_pred EEecCCeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee-CCeEEEEEcCCcEEEEEcCCCCC
Q 011268 329 VSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR-KRKTFVLVDTGSVYGFGWMGFGS 407 (489)
Q Consensus 329 i~~g~~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G-~~ht~~lt~~G~vy~wG~n~~gq 407 (489)
++.-....+.-..+|.|..|-... ....+..+..-....|..|+.. +...++...++.|..|-
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~----------~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd------ 241 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSS----------PDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFD------ 241 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSC----------TTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEE------
T ss_pred ECCCCCEEEEEcCCCEEEEEECCC----------CCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEE------
Q ss_pred CCCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCC
Q 011268 408 LGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQL 463 (489)
Q Consensus 408 LG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqL 463 (489)
......+..+..........+. .+++...+|+..+-|....+.+
T Consensus 242 -----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~s~~d~~i 285 (343)
T 3lrv_A 242 -----------LRKDVGTLAYPTYTIPEFKTGT-VTYDIDDSGKNMIAYSNESNSL 285 (343)
T ss_dssp -----------TTSSTTCBSSCCCBC-----CC-EEEEECTTSSEEEEEETTTTEE
T ss_pred -----------cCCCCcceeecccccccccccc-eEEEECCCCCEEEEecCCCCcE
No 122
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=32.10 E-value=1.6e+02 Score=27.10 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=13.5
Q ss_pred CCeeEEEEcCCcEEEEeCC
Q 011268 226 LNFTGFLTIRGHVHTCGSN 244 (489)
Q Consensus 226 ~~h~~~Lt~~G~vy~wG~n 244 (489)
..|+++. -+++||.+|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 4566666 68999999853
No 123
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=31.29 E-value=2.9e+02 Score=24.76 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=11.8
Q ss_pred CeEEEEEcCCC-EEEEeCC
Q 011268 441 YHTVVVTDRGR-LFGFGDN 458 (489)
Q Consensus 441 ~ht~~l~~~G~-v~~wG~n 458 (489)
-+.+++..||+ +|.-..+
T Consensus 316 ~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 316 PNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEcCCCCEEEEEEcc
Confidence 35677888888 6655443
No 124
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=29.52 E-value=89 Score=28.45 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=12.9
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|++++.++++|++|-.
T Consensus 91 ~~~~~~~~~~lyv~GG~ 107 (315)
T 4asc_A 91 LFGLGEALNSIYVVGGR 107 (315)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred ceeEEEECCEEEEEeCC
Confidence 46666688999999963
No 125
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=28.41 E-value=2.1e+02 Score=25.53 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=12.9
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|++++-++++|++|-.
T Consensus 101 ~~~~~~~~~~iyv~GG~ 117 (302)
T 2xn4_A 101 TLGAAVLNGLLYAVGGF 117 (302)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ceEEEEECCEEEEEcCC
Confidence 46666678999999953
No 126
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=28.24 E-value=3.1e+02 Score=24.25 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCEEEEEeC-CCEEEEEEcCCc-EEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCc-EE
Q 011268 270 GSVVQIAAG-PSYMLAVTGNGV-VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY-VY 346 (489)
Q Consensus 270 ~~i~~i~~G-~~~~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~-vy 346 (489)
.++.-..++ ....++++.+|+ ++.++.... .......|..+.... +.++.-.........+++.+|+ +|
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~------~~~~~~~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETG------IERPHAQFRQINKNK--KGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCS------CSSGGGSCSCCEECT--TSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCC------CCcccccccCceECC--CCCEEEEecCCCEEEEECCCCCEEE
Confidence 456555666 556666777885 455543210 000111222222221 1233322333445556776674 45
Q ss_pred EEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCC-eEEEEEcC-Cc-EEEEEcCCCCCCCCCCCCCCCceeccE
Q 011268 347 TWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKR-KTFVLVDT-GS-VYGFGWMGFGSLGFPDRGVSDKVLRPR 423 (489)
Q Consensus 347 ~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~-ht~~lt~~-G~-vy~wG~n~~gqLG~~~~~~~~~~~~P~ 423 (489)
.++... .|.-+..+.+-.+. |+.... ..+++..+ |+ +|.++.+... | .....|.
T Consensus 160 ~~~~~~-------------~~~~~~~~~~g~~~-v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--~-------~~l~~~~ 216 (276)
T 3no2_A 160 SVKLSG-------------TPFSSAFLDNGDCL-VACGDAHCFVQLNLESNRIVRRVNANDIE--G-------VQLFFVA 216 (276)
T ss_dssp EEECSS-------------CCCEEEECTTSCEE-EECBTTSEEEEECTTTCCEEEEEEGGGSB--S-------CCCSEEE
T ss_pred EEECCC-------------CccceeEcCCCCEE-EEeCCCCeEEEEeCcCCcEEEEecCCCCC--C-------ccccccc
Confidence 555420 12222223333444 444444 45566666 65 5666643211 0 0112233
Q ss_pred EcCcCCCCCEEEEEe-c---------CCeEEEEEcCCCEEEEeCCCCCCCCC
Q 011268 424 ILDSLRAHHVSQIST-G---------LYHTVVVTDRGRLFGFGDNERAQLGH 465 (489)
Q Consensus 424 ~v~~~~~~~v~~i~~-G---------~~ht~~l~~~G~v~~wG~n~~GqLG~ 465 (489)
-+..+.+.++.-... | ..+.+.++.+|++ .|=.+.....|.
T Consensus 217 ~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 217 QLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred cceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 333333444443332 2 3468889899986 555566556553
No 127
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=26.11 E-value=3.4e+02 Score=23.93 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=91.1
Q ss_pred CEEEEEeCC--ceeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEcc--CCeeEEEEcCCcEEE
Q 011268 165 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHT 240 (489)
Q Consensus 165 ~i~~vs~G~--~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G--~~h~~~Lt~~G~vy~ 240 (489)
.|..++... ...+.-..||.|..|...... ....+.. ....|..++.. ....+.-..||.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~------------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------FEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc------------cchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 566666543 344445678999999754311 0111111 12235555543 334445567888998
Q ss_pred EeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeec
Q 011268 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 318 (489)
Q Consensus 241 wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~ 318 (489)
|-..... ....+... ...|..++.. ....+.-..+|.|..|-.... ..+..
T Consensus 92 wd~~~~~-----------~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------~~~~~ 144 (312)
T 4ery_A 92 WDVSSGK-----------CLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------------KCLKT 144 (312)
T ss_dssp EETTTCC-----------EEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC--------------CEEEE
T ss_pred EECCCCc-----------EEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------EEEEE
Confidence 8532211 01111111 1345555543 344555567888888854221 11112
Q ss_pred cccCCccEEEEEecC--CeEEEEcCCCcEEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEee--CCeEEEEEcC
Q 011268 319 FRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCAR--KRKTFVLVDT 394 (489)
Q Consensus 319 ~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G--~~ht~~lt~~ 394 (489)
+......|..++... ...+.-..+|.|..|-...... ...+.......+..++.. ..+.++-..+
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----------LKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 222223455555433 3444456788888886532110 111111122234444432 3445556678
Q ss_pred CcEEEEEc
Q 011268 395 GSVYGFGW 402 (489)
Q Consensus 395 G~vy~wG~ 402 (489)
|.|..|-.
T Consensus 214 ~~i~iwd~ 221 (312)
T 4ery_A 214 NTLKLWDY 221 (312)
T ss_dssp TEEEEEET
T ss_pred CeEEEEEC
Confidence 99999874
No 128
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=25.92 E-value=2.2e+02 Score=25.71 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=13.0
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|++++.++++|++|-.
T Consensus 102 ~~~~~~~~~~iyv~GG~ 118 (318)
T 2woz_A 102 LFGLGEVDDKIYVVAGK 118 (318)
T ss_dssp SCEEEEETTEEEEEEEE
T ss_pred ccceEEECCEEEEEcCc
Confidence 56666688999999953
No 129
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=25.85 E-value=3.7e+02 Score=24.21 Aligned_cols=206 Identities=8% Similarity=-0.134 Sum_probs=94.3
Q ss_pred CeEEEEcc--CCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEE
Q 011268 218 PCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYS 293 (489)
Q Consensus 218 ~i~~V~~G--~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~ 293 (489)
.|..++.. ....+.-..+|.|..|-... ++ ..+. .........|..++.. ....++-..+|.|+.
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~---------~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RT---------WKPT-LVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEET-TE---------EEEE-EECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCC-Ce---------eeee-EEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 45555443 34455556788888884321 10 0111 1111112457666654 345555667888888
Q ss_pred ecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC--CeEEEEcCCCcEEEEecCCCCCCCCCCC----CCcccc
Q 011268 294 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDE----IDKTLP 367 (489)
Q Consensus 294 wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy~wG~n~~gqlg~~~~----~~~~~p 367 (489)
|-...... ......+. ......|..++... ...+.-..+|.|+.|-......-..... ......
T Consensus 123 ~d~~~~~~--------~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (372)
T 1k8k_C 123 CYFEQEND--------WWVCKHIK--KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 192 (372)
T ss_dssp EEEETTTT--------EEEEEEEC--TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTT
T ss_pred EEecCCCc--------ceeeeeee--cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchh
Confidence 74322110 00001111 11123466665543 3444456789999997532110000000 000011
Q ss_pred eeeccC--CCCcEEEEEee--CCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEEcCcCCCCCEEEEEec-CCe
Q 011268 368 EPLSSL--KSHLAVQVCAR--KRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTG-LYH 442 (489)
Q Consensus 368 ~~v~~~--~~~~i~~v~~G--~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G-~~h 442 (489)
..+..+ ....|..++.. ..+.+....+|.|+.|-...... ...+. .....|..++.. ...
T Consensus 193 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~-~~~~~v~~~~~~~~~~ 257 (372)
T 1k8k_C 193 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA--------------VATLA-SETLPLLAVTFITESS 257 (372)
T ss_dssp CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE--------------EEEEE-CSSCCEEEEEEEETTE
T ss_pred hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce--------------eEEEc-cCCCCeEEEEEecCCC
Confidence 122222 23346666653 33455556788888886432110 01111 112345555543 334
Q ss_pred EEEEEcCCCEEEEeCCC
Q 011268 443 TVVVTDRGRLFGFGDNE 459 (489)
Q Consensus 443 t~~l~~~G~v~~wG~n~ 459 (489)
.++...+|.|+.|-...
T Consensus 258 ~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 258 LVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEETTSSCEEEEEET
T ss_pred EEEEEeCCeEEEEEccC
Confidence 55566788888886544
No 130
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=25.18 E-value=3.5e+02 Score=23.75 Aligned_cols=78 Identities=9% Similarity=-0.122 Sum_probs=42.4
Q ss_pred CCCeEEEEecC---ceeEEe--eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCC----ceeEEEEc
Q 011268 111 AGNQMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQ 181 (489)
Q Consensus 111 ~~~~~~i~~G~---~h~~~l--~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~----~~~~~lt~ 181 (489)
...|..++.-. ...++. .||.|.+|-.......... . ...+..........|..++... ...+.-..
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG---R-RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS---C-SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc---c-CcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 34466666543 344444 7899999976432111000 0 0011111112334688887764 35666678
Q ss_pred CCcEEEEeCCC
Q 011268 182 SGQVFTCGDNS 192 (489)
Q Consensus 182 ~G~v~~wG~n~ 192 (489)
||.|+.|-...
T Consensus 133 dg~v~iwd~~~ 143 (351)
T 3f3f_A 133 DGILRLYDALE 143 (351)
T ss_dssp TCEEEEEECSS
T ss_pred CCcEEEecCCC
Confidence 99999997544
No 131
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=24.73 E-value=3.8e+02 Score=24.05 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=51.8
Q ss_pred CEEEEEeCC--CEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecC--CeEEEEcCCCcEE
Q 011268 271 SVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVY 346 (489)
Q Consensus 271 ~i~~i~~G~--~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~--~h~~~lt~~G~vy 346 (489)
.|..++... ...+.-..+|.|..|-..... .+..+......|..++-.. .+.+.-..+|.|.
T Consensus 208 ~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--------------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEETTTCC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--------------eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 455555543 334444567888888543211 1111222223466665533 3444556788999
Q ss_pred EEecCCCCCCCCCCCCCcccceeeccC--CCCcEEEEEeeC--CeEEEEEcCCcEEEEE
Q 011268 347 TWGKGYCGALGHGDEIDKTLPEPLSSL--KSHLAVQVCARK--RKTFVLVDTGSVYGFG 401 (489)
Q Consensus 347 ~wG~n~~gqlg~~~~~~~~~p~~v~~~--~~~~i~~v~~G~--~ht~~lt~~G~vy~wG 401 (489)
.|-.... +.+..+ ....|..++... ...+....||.|..|-
T Consensus 274 iwd~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 274 VWDVGTR--------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEeCCCC--------------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9965321 111111 123466665533 2344455778888775
No 132
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=24.23 E-value=2.6e+02 Score=22.00 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=52.6
Q ss_pred EEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEE-eCCCEEEEEEcCCcEEEecCCC
Q 011268 220 KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGS 298 (489)
Q Consensus 220 ~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~-~G~~~~~~lt~~G~vy~wG~n~ 298 (489)
.--.|...+.+-+..||+|-.-... .+...-..+.... ..++.|- .-..+-+++..+|+||+--..
T Consensus 9 ~~~~~~~g~~L~I~~dG~V~Gt~~~----------~~~~s~l~~~~v~--~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~- 75 (132)
T 3q7x_A 9 LLRSTETGQFLRINPDGTVDGTRDR----------SDPGIQFQISPEG--NGEVLLRSTETGQFLRINPDGTVDGTRDR- 75 (132)
T ss_dssp EEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEE--TTEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred eeeeccCcEEEEECCCCcEEeecCC----------CCCCcEEEEEecc--cCEEEEEEEcccEEEEECCCCCEeeccCC-
Confidence 3345666677778889999765321 1112222222221 2344444 334567788899999974221
Q ss_pred CcccCCCCCCCCcCceEeeccccCCccEEEEE-ecCCeEEEEcCCCcEEE
Q 011268 299 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS-AGDEHVVALDSSGYVYT 347 (489)
Q Consensus 299 ~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~-~g~~h~~~lt~~G~vy~ 347 (489)
.+.....++..... ..+.|. .-....++++.+|++|.
T Consensus 76 ---------s~ec~flE~~~~~~---g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 76 ---------SDPGIQFQISPEGN---GEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp ---------CCGGGCEEEEEEET---TEEEEEETTTCCEEEECTTSBEEE
T ss_pred ---------CCCceeEEEEeecC---cEEEEEeccCCeEEEECCCCcCcC
Confidence 11111222221111 223332 22334788999999996
No 133
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=23.17 E-value=1.2e+02 Score=27.40 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=13.0
Q ss_pred ceeEEeeCCcEEEEeCC
Q 011268 122 YHTLLISNSSVFSCGSS 138 (489)
Q Consensus 122 ~h~~~l~~g~vy~wG~n 138 (489)
.|++++.++++|++|-.
T Consensus 94 ~~~~~~~~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGS 110 (306)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEECCC
Confidence 45555588999999964
No 134
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.35 E-value=7.1e+02 Score=25.93 Aligned_cols=124 Identities=12% Similarity=0.124 Sum_probs=66.9
Q ss_pred EEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCEEEEEEcCCcEEEecCCCC
Q 011268 222 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSN 299 (489)
Q Consensus 222 V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~~~~~~~~i~~i~~G--~~~~~~lt~~G~vy~wG~n~~ 299 (489)
.+...++.+++|+.|++|..-....-. +...-.+....+ .+...++|+.+.+. ..+.++.|++|.+.-.-...+
T Consensus 510 ~~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll-~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~ 585 (716)
T 1zvu_A 510 KGKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKL-TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 585 (716)
T ss_dssp CCCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTS-CCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred EecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhcc-CCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHh
Confidence 344556678899999999875433211 111111111122 23344788888776 456788899998876533221
Q ss_pred cccCCCCCCCCcCceEeeccccCCccEEE---EEecCCeEEEEcCCCcEEEEecCCCCCCC
Q 011268 300 FCLGHGEQHDELQPRAIQTFRRKGIHVVR---VSAGDEHVVALDSSGYVYTWGKGYCGALG 357 (489)
Q Consensus 300 gqlG~~~~~~~~~p~~i~~~~~~~~~i~~---i~~g~~h~~~lt~~G~vy~wG~n~~gqlg 357 (489)
- . ..........+.. +..++. +..+..+.+++|++|++..+-.+..-.+|
T Consensus 586 ~------~-~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 586 V------A-RNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp C------C-CSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred c------c-cCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 1 0 0111111111221 112222 22367788999999999999876654444
No 135
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=21.21 E-value=4.2e+02 Score=23.18 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=11.4
Q ss_pred eEEEEcCCCcEEEEe
Q 011268 335 HVVALDSSGYVYTWG 349 (489)
Q Consensus 335 h~~~lt~~G~vy~wG 349 (489)
..++++.+|++|+-.
T Consensus 221 ~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA 235 (296)
T ss_dssp CSEEEBTTSCEEEEE
T ss_pred CeEEECCCCCEEEEc
Confidence 457788888888766
No 136
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=20.45 E-value=5.6e+02 Score=24.35 Aligned_cols=166 Identities=8% Similarity=0.048 Sum_probs=77.0
Q ss_pred EEEEecCceeEEe-eCCc-EEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeC---------CceeEEEEcCC
Q 011268 115 MQITTGRYHTLLI-SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---------ENHAAFVLQSG 183 (489)
Q Consensus 115 ~~i~~G~~h~~~l-~~g~-vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G---------~~~~~~lt~~G 183 (489)
-.|..|...-+++ .||+ +|+.... ..+.-.|. ....-..+.......+..|..+ .-+.++++.||
T Consensus 73 ~~I~vG~~P~va~spDG~~lyVan~~-~~r~~~G~---~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 73 GMIDGGFLPNPVVADDGSFIAHASTV-FSRIARGE---RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEECSSCEEEECTTSSCEEEEEEE-EEETTEEE---EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEECCCCCcEEECCCCCEEEEEccc-ccccccCC---CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 3466665444777 6665 8876421 00000000 0113344555555566777665 35678999998
Q ss_pred c-EEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCcee
Q 011268 184 Q-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 262 (489)
Q Consensus 184 ~-v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~ 262 (489)
+ +|+......+.+..-+.... ..-..++. .+. ..-...|..-.++++.||++........|.+-. .. ...
T Consensus 149 k~lyVan~~~~~~VsVID~~t~-~vv~tI~v-~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-----~~-~~~ 219 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGK-AFKRMLDV-PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----TH-TEV 219 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTT-EEEEEEEC-CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-----EE-CCC
T ss_pred CEEEEEEcCCCCeEEEEECCCC-cEEEEEEC-CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-----ee-cce
Confidence 7 77764332222211111100 00011111 110 111233555567889999988886654444310 00 001
Q ss_pred ecCCCCCCCEE---EEEeCCCEEEEEEcCCcEEEec
Q 011268 263 IAPLEEVGSVV---QIAAGPSYMLAVTGNGVVYSFG 295 (489)
Q Consensus 263 i~~~~~~~~i~---~i~~G~~~~~~lt~~G~vy~wG 295 (489)
+ .... .++. .......+.++++.+|+||..-
T Consensus 220 ~-~~~~-~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 220 F-HPED-EFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp C-SCTT-SCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred e-cccc-ccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 1 0100 1111 1222344667788889999874
Done!