BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011270
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFP-SKVQLIYV 239
+A++GP+G A+ D Y+ ++LV GIG+TPF SIL+ + N K+ ++
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWL 60
Query: 240 IKSSQEICLLNSISPLLSNQQSKKWH---LTLKVFVTQEEQSSVTVREVLND 288
+ + + LL +Q ++ + L+ +++T ++S V +D
Sbjct: 61 CRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHD 112
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQ 467
GRPN++ F + + + IGV +CGPE++ E+++K S S+
Sbjct: 128 GRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSE 171
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 196 RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPL 255
R S +LVAGGIGITP LS+ +++ A+ R +R L Y+ + + + ++
Sbjct: 110 RAKSFILVAGGIGITPMLSMARQL-RAEGLRSFR------LYYLTRDPEGTAFFDELT-- 160
Query: 256 LSNQQSKKWHLTLKV 270
S +W +K+
Sbjct: 161 -----SDEWRSDVKI 170
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 188 GPATMDFLRYDS-----LLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242
GP+ FL ++ ++ +A G GI PF+ + +E+ ++ +F + L+Y
Sbjct: 151 GPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELL---EHKLIKFTGNITLVYGAPY 207
Query: 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS 279
S E+ +++ + L +SK + L +++EE++S
Sbjct: 208 SDELVMMDYLKGL----ESKHKNFKLITAISREEKNS 240
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240
++ GP+G + ++ +L++AGG GI PFLS+LQ + S V+L++ +
Sbjct: 195 MSFTGPFGSFYLRDVKR-PVLMLAGGTGIAPFLSMLQVLEQKGSEH------PVRLVFGV 247
Query: 241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ 277
C L ++ L + QQ W V E Q
Sbjct: 248 TQD---CDLVALEQLDALQQKLPWFEYRTVVAHAESQ 281
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQ 217
V + PYG +D ++L++GG+G+TP +S+L+
Sbjct: 250 VKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQ 217
V + PYG +D ++L++GG+G+TP +S+L+
Sbjct: 250 VKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 142 VDDQTMSLIVKC----DGEWTSSLYQ-----MIHAELDSDADQMRCIPVAIEGPYGPATM 192
VDD+T+SL V+ E ++Y + H E S+ V I GP G +
Sbjct: 91 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE--------VKITGPVGKEML 142
Query: 193 DFLRYD---SLLLVAGGIGITPFLSILQEI---ASAQSNRKYRFPSKVQLIYVIKSSQEI 246
L D +++++AGG GITP + L + A +N +Y+F L++ + ++ I
Sbjct: 143 --LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNI 200
Query: 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND 288
+ + QQ + L +++E+++ R + D
Sbjct: 201 LYKEELEEI---QQKYPDNFRLTYAISREQKNPQGGRMYIQD 239
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 142 VDDQTMSLIVKC----DGEWTSSLYQ-----MIHAELDSDADQMRCIPVAIEGPYGPATM 192
VDD+T+SL V+ E ++Y + H E S+ V I GP G +
Sbjct: 91 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE--------VKITGPVGKEML 142
Query: 193 DFLRYD---SLLLVAGGIGITPFLSILQEI---ASAQSNRKYRFPSKVQLIYVIKSSQEI 246
L D +++++AGG GITP + L + A +N +Y+F L++ + ++ I
Sbjct: 143 --LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNI 200
Query: 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND 288
+ + QQ + L +++E+++ R + D
Sbjct: 201 LYKEELEEI---QQKYPDNFRLTYAISREQKNPQGGRMYIQD 239
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 142 VDDQTMSLIVKC----DGEWTSSLYQ-----MIHAELDSDADQMRCIPVAIEGPYGPATM 192
VDD+T+SL V+ E ++Y + H E S+ V I GP G +
Sbjct: 91 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE--------VKITGPVGKEML 142
Query: 193 DFLRYD---SLLLVAGGIGITPFLSILQEI---ASAQSNRKYRFPSKVQLIYVIKSSQEI 246
L D +++++AGG GITP + L + A +N +Y+F L++ + ++ I
Sbjct: 143 --LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNI 200
Query: 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND 288
+ + QQ + L +++E+++ R + D
Sbjct: 201 LYKEELEEI---QQKYPDNFRLTYAISREQKNPQGGRMYIQD 239
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 142 VDDQTMSLIVKC----DGEWTSSLYQ-----MIHAELDSDADQMRCIPVAIEGPYGPATM 192
VDD+T+SL V+ E ++Y + H E S+ V I GP G +
Sbjct: 90 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE--------VKITGPVGKEML 141
Query: 193 DFLRYD---SLLLVAGGIGITPFLSILQEI---ASAQSNRKYRFPSKVQLIYVIKSSQEI 246
L D +++++AGG GITP + L + A +N +Y+F L++ + ++ I
Sbjct: 142 --LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNI 199
Query: 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND 288
+ + QQ + L +++E+++ R + D
Sbjct: 200 LYKEELEEI---QQKYPDNFRLTYAISREQKNPQGGRMYIQD 238
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 200 LLLVAGGIGITPFLSILQEIASAQSNR 226
L+L++ G+G+TP L++L+E NR
Sbjct: 275 LVLLSSGVGVTPLLAMLEEQVKCNPNR 301
>pdb|2QDX|A Chain A, P.Aeruginosa Fpr With Fad
pdb|3CRZ|A Chain A, Ferredoxin-Nadp Reductase
Length = 257
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 193 DFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSI 252
D L L L++ G G+ PFLS++Q+ ++ +Y KV L++ ++ E+ + I
Sbjct: 102 DLLPGKHLYLLSTGTGMAPFLSVIQD---PETYERY---EKVILVHGVRWVSELAYADFI 155
Query: 253 SPLLSNQQ 260
+ +L +
Sbjct: 156 TKVLPEHE 163
>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
pdb|1QX4|B Chain B, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
Length = 274
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 199 SLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSN 258
S+ ++AGG GITP L +++ + ++ + L++ +S ++I L + L N
Sbjct: 147 SVGMIAGGTGITPMLQVIRAVLKDPNDHTVCY-----LLFANQSEKDILLRPELE-ELRN 200
Query: 259 QQSKKWHL 266
+ S ++ L
Sbjct: 201 EHSSRFKL 208
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 176 MRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGIT--------------PFLSILQEIAS 221
++ + A++ YGP MD + DSL G I IT P +L +IA
Sbjct: 39 VKAVEEALKSTYGPRGMDKMLVDSL----GDITITNDGATILDKMDLQHPAAKLLVQIAK 94
Query: 222 AQSNRKYRFPSKVQLIY---VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS 278
Q + + +K +I+ ++K ++++ + ++ + K + L+ QE
Sbjct: 95 GQ-DEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTI--QELAQ 151
Query: 279 SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSI 323
+V++ ND L+R + + S+ AV G I + +T +
Sbjct: 152 TVSI----NDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQV 192
>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
Length = 274
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 199 SLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSN 258
S+ ++AGG GITP L +++ + ++ + L++ +S ++I L + L N
Sbjct: 147 SVGMIAGGTGITPMLQVIRAVLKDPNDHTVCY-----LLFANQSEKDILLRPELEE-LRN 200
Query: 259 QQSKKWHL 266
+ S ++ L
Sbjct: 201 EHSSRFKL 208
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 28/162 (17%)
Query: 142 VDDQTMSLIVKC----DGEWTSSLYQ-----MIHAELDSDADQMRCIPVAIEGPYGPATM 192
VDD+T+SL V+ E ++Y + H E S+ V I GP G +
Sbjct: 82 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE--------VKITGPVGKEML 133
Query: 193 DFLRYD---SLLLVAGGIGITPFLSILQEI---ASAQSNRKYRFPSKVQLIYVIKSSQEI 246
L D +++++AGG GI P + L + A +N +Y+F L++ + ++ I
Sbjct: 134 --LPDDPEANVIMLAGGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNI 191
Query: 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLND 288
+ + QQ + L +++E+++ R + D
Sbjct: 192 LYKEELEEI---QQKYPDNFRLTYAISREQKNPQGGRMYIQD 230
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 262 KKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGIT 321
K W + + F T E SVT + L+ VR T ++ + E +I A +G
Sbjct: 121 KSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVI--AKNLGKA 178
Query: 322 SILFVIFLISLNHIFVPVEKKLPSEKL----AAPSEKVVSKE 359
I + FL + + VP +P EKL P ++V K+
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVP-EKLKNMPTPPKDEVEQKD 219
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 262 KKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGIT 321
K W + + F T E SVT + L+ VR T ++ + E +I A +G
Sbjct: 121 KSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVI--AKNLGKA 178
Query: 322 SILFVIFLISLNHIFVPVEKKLPSEKL----AAPSEKVVSKE 359
I + FL + + VP +P EKL P ++V K+
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVP-EKLKNMPTPPKDEVEQKD 219
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 262 KKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGIT 321
K W + + F T E SVT + L+ VR T ++ + E +I A +G
Sbjct: 121 KSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVI--AKNLGKA 178
Query: 322 SILFVIFLISLNHIFVPVEKKLPSEKL----AAPSEKVVSKE 359
I + FL + + VP +P EKL P ++V K+
Sbjct: 179 PITYQKFLGIVEQLKVPKVLGVP-EKLKNMPTPPKDEVEQKD 219
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 199 SLLLVAGGIGITPFLSILQEIASAQSNRKY----RFPSKVQLIYVIKSSQEICLLNSI 252
+ + +A G GI+P++S L+++ + N Y + + + Y + + I LN +
Sbjct: 172 NFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNEL 229
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 199 SLLLVAGGIGITPFLSILQEIASAQSNRKY----RFPSKVQLIYVIKSSQEICLLNSI 252
+ + +A G GI+P++S L+++ + N Y + + + Y + + I LN +
Sbjct: 172 NFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNEL 229
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 199 SLLLVAGGIGITPFLSILQEIASAQSNRKY----RFPSKVQLIYVIKSSQEICLLNSI 252
+ + +A G GI+P++S L+++ + N Y + + + Y + + I LN +
Sbjct: 172 NFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNEL 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,899,517
Number of Sequences: 62578
Number of extensions: 471877
Number of successful extensions: 892
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 27
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)